locus-tag class description LTQ03_00005 PF01609 Transposase DDE domain LTQ03_00005 PF13006 Insertion element 4 transposase N-terminal LTQ03_00010 PF03928 Haem-degrading LTQ03_00015 PF00248 Aldo/keto reductase family LTQ03_00020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_00020 PF03466 LysR substrate binding domain LTQ03_00030 PF03440 Aerolysin/Pertussis toxin (APT) domain LTQ03_00030 PF01117 Aerolysin toxin LTQ03_00045 PF03372 Endonuclease/Exonuclease/phosphatase family LTQ03_00065 PF04116 Fatty acid hydroxylase superfamily LTQ03_00090 PF00929 Exonuclease LTQ03_00090 PF08411 Exonuclease C-terminal LTQ03_00095 PF03788 LrgA family LTQ03_00100 PF04172 LrgB-like family LTQ03_00105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ03_00105 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ03_00110 PF02222 ATP-grasp domain LTQ03_00115 PF05724 Thiopurine S-methyltransferase (TPMT) LTQ03_00125 PF00034 Cytochrome c LTQ03_00160 PF00216 Bacterial DNA-binding protein LTQ03_00170 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_00175 PF02492 CobW/HypB/UreG, nucleotide-binding domain LTQ03_00175 PF07683 Cobalamin synthesis protein cobW C-terminal domain LTQ03_00185 PF00155 Aminotransferase class I and II LTQ03_00185 PF00392 Bacterial regulatory proteins, gntR family LTQ03_00190 PF00155 Aminotransferase class I and II LTQ03_00195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_00195 PF00072 Response regulator receiver domain LTQ03_00200 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LTQ03_00240 PF17200 Single Cache domain 2 LTQ03_00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_00240 PF00672 HAMP domain LTQ03_00245 PF13280 WYL domain LTQ03_00245 PF08279 HTH domain LTQ03_00280 PF00216 Bacterial DNA-binding protein LTQ03_00290 PF02350 UDP-N-acetylglucosamine 2-epimerase LTQ03_00300 PF00535 Glycosyl transferase family 2 LTQ03_00320 PF01610 Transposase LTQ03_00320 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_00320 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_00325 PF01048 Phosphorylase superfamily LTQ03_00330 PF04973 Nicotinamide mononucleotide transporter LTQ03_00350 PF02001 Protein of unknown function DUF134 LTQ03_00365 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_00365 PF07689 KaiB domain LTQ03_00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_00370 PF00072 Response regulator receiver domain LTQ03_00370 PF00486 Transcriptional regulatory protein, C terminal LTQ03_00385 PF03824 High-affinity nickel-transport protein LTQ03_00400 PF12805 FUSC-like inner membrane protein yccS LTQ03_00405 PF01156 Inosine-uridine preferring nucleoside hydrolase LTQ03_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_00415 PF03466 LysR substrate binding domain LTQ03_00420 PF01039 Carboxyl transferase domain LTQ03_00420 PF17848 Acetyl-coA carboxylase zinc finger domain LTQ03_00435 PF03466 LysR substrate binding domain LTQ03_00435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_00445 PF00892 EamA-like transporter family LTQ03_00455 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ03_00460 PF01037 Lrp/AsnC ligand binding domain LTQ03_00465 PF00072 Response regulator receiver domain LTQ03_00465 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_00470 PF01738 Dienelactone hydrolase family LTQ03_00475 PF03180 NLPA lipoprotein LTQ03_00490 PF04231 Endonuclease I LTQ03_00495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ03_00500 PF02152 Dihydroneopterin aldolase LTQ03_00505 PF01227 GTP cyclohydrolase I LTQ03_00530 PF01734 Patatin-like phospholipase LTQ03_00560 PF00561 alpha/beta hydrolase fold LTQ03_00580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LTQ03_00580 PF01588 Putative tRNA binding domain LTQ03_00580 PF03484 tRNA synthetase B5 domain LTQ03_00580 PF03147 Ferredoxin-fold anticodon binding domain LTQ03_00580 PF03483 B3/4 domain LTQ03_00585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LTQ03_00585 PF01409 tRNA synthetases class II core domain (F) LTQ03_00590 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_00590 PF00072 Response regulator receiver domain LTQ03_00630 PF04408 Helicase associated domain (HA2) LTQ03_00630 PF00270 DEAD/DEAH box helicase LTQ03_00630 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LTQ03_00630 PF00271 Helicase conserved C-terminal domain LTQ03_00630 PF11898 Domain of unknown function (DUF3418) LTQ03_00660 PF00486 Transcriptional regulatory protein, C terminal LTQ03_00680 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_00690 PF00012 Hsp70 protein LTQ03_00695 PF00012 Hsp70 protein LTQ03_00710 PF13302 Acetyltransferase (GNAT) domain LTQ03_00715 PF18024 Helix-turn-helix domain LTQ03_00715 PF00158 Sigma-54 interaction domain LTQ03_00720 PF05128 Domain of unknown function (DUF697) LTQ03_00725 PF04317 YcjX-like family, DUF463 LTQ03_00740 PF00425 chorismate binding enzyme LTQ03_00740 PF04715 Anthranilate synthase component I, N terminal region LTQ03_00745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_00745 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_00745 PF00072 Response regulator receiver domain LTQ03_00745 PF09308 LuxQ, periplasmic LTQ03_00755 PF00293 NUDIX domain LTQ03_00760 PF03222 Tryptophan/tyrosine permease family LTQ03_00765 PF03313 Serine dehydratase alpha chain LTQ03_00765 PF03315 Serine dehydratase beta chain LTQ03_00770 PF03222 Tryptophan/tyrosine permease family LTQ03_00775 PF02634 FdhD/NarQ family LTQ03_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_00780 PF03466 LysR substrate binding domain LTQ03_00785 PF01568 Molydopterin dinucleotide binding domain LTQ03_00785 PF00384 Molybdopterin oxidoreductase LTQ03_00790 PF02743 Cache domain LTQ03_00790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_00790 PF00672 HAMP domain LTQ03_00795 PF00916 Sulfate permease family LTQ03_00795 PF01740 STAS domain LTQ03_00800 PF01336 OB-fold nucleic acid binding domain LTQ03_00800 PF00152 tRNA synthetases class II (D, K and N) LTQ03_00820 PF00392 Bacterial regulatory proteins, gntR family LTQ03_00820 PF00155 Aminotransferase class I and II LTQ03_00830 PF00672 HAMP domain LTQ03_00830 PF01966 HD domain LTQ03_00835 PF00155 Aminotransferase class I and II LTQ03_00850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ03_00850 PF14579 Helix-hairpin-helix motif LTQ03_00850 PF02811 PHP domain LTQ03_00850 PF00929 Exonuclease LTQ03_00850 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ03_00855 PF03475 3-alpha domain LTQ03_00855 PF03473 MOSC domain LTQ03_00865 PF10114 Sensory domain found in PocR LTQ03_00865 PF12833 Helix-turn-helix domain LTQ03_00870 PF00266 Aminotransferase class-V LTQ03_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_00880 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_00880 PF00989 PAS fold LTQ03_00885 PF00072 Response regulator receiver domain LTQ03_00885 PF00158 Sigma-54 interaction domain LTQ03_00885 PF02954 Bacterial regulatory protein, Fis family LTQ03_00895 PF04994 TfoX C-terminal domain LTQ03_00895 PF04993 TfoX N-terminal domain LTQ03_00905 PF03956 Lysine exporter LysO LTQ03_00915 PF00282 Pyridoxal-dependent decarboxylase conserved domain LTQ03_00920 PF01380 SIS domain LTQ03_00920 PF01418 Helix-turn-helix domain, rpiR family LTQ03_00925 PF00465 Iron-containing alcohol dehydrogenase LTQ03_00930 PF00462 Glutaredoxin LTQ03_00935 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_00935 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_00935 PF01610 Transposase LTQ03_00940 PF06826 Predicted Permease Membrane Region LTQ03_00940 PF02080 TrkA-C domain LTQ03_00945 PF07055 Enoyl reductase FAD binding domain LTQ03_00945 PF12241 Trans-2-enoyl-CoA reductase catalytic region LTQ03_00945 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LTQ03_00950 PF14706 Transposase DNA-binding LTQ03_00950 PF02281 Transposase Tn5 dimerisation domain LTQ03_00950 PF01609 Transposase DDE domain LTQ03_00960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LTQ03_00960 PF02770 Acyl-CoA dehydrogenase, middle domain LTQ03_00960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LTQ03_00960 PF09317 Domain of unknown function (DUF1974) LTQ03_00965 PF00440 Bacterial regulatory proteins, tetR family LTQ03_00965 PF16295 Tetracyclin repressor-like, C-terminal domain LTQ03_00970 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_00970 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_00970 PF01610 Transposase LTQ03_00990 PF06965 Na+/H+ antiporter 1 LTQ03_01005 PF00005 ABC transporter LTQ03_01010 PF01554 MatE LTQ03_01015 PF11066 Protein of unknown function (DUF2867) LTQ03_01015 PF13460 NAD(P)H-binding LTQ03_01025 PF07690 Major Facilitator Superfamily LTQ03_01030 PF01479 S4 domain LTQ03_01030 PF00849 RNA pseudouridylate synthase LTQ03_01035 PF04851 Type III restriction enzyme, res subunit LTQ03_01035 PF00271 Helicase conserved C-terminal domain LTQ03_01045 PF00072 Response regulator receiver domain LTQ03_01045 PF00486 Transcriptional regulatory protein, C terminal LTQ03_01050 PF00672 HAMP domain LTQ03_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_01050 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_01060 PF09335 SNARE associated Golgi protein LTQ03_01065 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LTQ03_01065 PF00535 Glycosyl transferase family 2 LTQ03_01070 PF01386 Ribosomal L25p family LTQ03_01140 PF02470 MlaD protein LTQ03_01145 PF04403 Paraquat-inducible protein A LTQ03_01150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_01150 PF03466 LysR substrate binding domain LTQ03_01160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LTQ03_01165 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_01170 PF00005 ABC transporter LTQ03_01170 PF00571 CBS domain LTQ03_01185 PF01568 Molydopterin dinucleotide binding domain LTQ03_01185 PF18364 Molybdopterin oxidoreductase N-terminal domain LTQ03_01185 PF00384 Molybdopterin oxidoreductase LTQ03_01190 PF03264 NapC/NirT cytochrome c family, N-terminal region LTQ03_01200 PF18027 Cytosolic carboxypeptidase N-terminal domain LTQ03_01200 PF00246 Zinc carboxypeptidase LTQ03_01210 PF01810 LysE type translocator LTQ03_01215 PF00271 Helicase conserved C-terminal domain LTQ03_01215 PF00270 DEAD/DEAH box helicase LTQ03_01225 PF01910 Thiamine-binding protein LTQ03_01235 PF06945 Protein of unknown function (DUF1289) LTQ03_01245 PF13416 Bacterial extracellular solute-binding protein LTQ03_01250 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_01255 PF00005 ABC transporter LTQ03_01260 PF01066 CDP-alcohol phosphatidyltransferase LTQ03_01265 PF13006 Insertion element 4 transposase N-terminal LTQ03_01265 PF01609 Transposase DDE domain LTQ03_01270 PF01170 Putative RNA methylase family UPF0020 LTQ03_01270 PF02926 THUMP domain LTQ03_01270 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ03_01275 PF00849 RNA pseudouridylate synthase LTQ03_01280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_01280 PF00672 HAMP domain LTQ03_01280 PF12729 Four helix bundle sensory module for signal transduction LTQ03_01285 PF00209 Sodium:neurotransmitter symporter family LTQ03_01290 PF13396 Phospholipase_D-nuclease N-terminal LTQ03_01290 PF13091 PLD-like domain LTQ03_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ03_01310 PF03352 Methyladenine glycosylase LTQ03_01315 PF00873 AcrB/AcrD/AcrF family LTQ03_01320 PF13533 Biotin-lipoyl like LTQ03_01325 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_01325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_01330 PF04024 PspC domain LTQ03_01335 PF06667 Phage shock protein B LTQ03_01340 PF04012 PspA/IM30 family LTQ03_01345 PF02954 Bacterial regulatory protein, Fis family LTQ03_01345 PF00158 Sigma-54 interaction domain LTQ03_01350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_01355 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_01360 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ03_01360 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_01365 PF00005 ABC transporter LTQ03_01365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_01370 PF00005 ABC transporter LTQ03_01385 PF02833 DHHA2 domain LTQ03_01385 PF01368 DHH family LTQ03_01395 PF18364 Molybdopterin oxidoreductase N-terminal domain LTQ03_01395 PF00384 Molybdopterin oxidoreductase LTQ03_01395 PF01568 Molydopterin dinucleotide binding domain LTQ03_01400 PF03264 NapC/NirT cytochrome c family, N-terminal region LTQ03_01405 PF06796 Periplasmic nitrate reductase protein NapE LTQ03_01410 PF03649 Uncharacterised protein family (UPF0014) LTQ03_01415 PF01226 Formate/nitrite transporter LTQ03_01435 PF02698 DUF218 domain LTQ03_01440 PF00265 Thymidine kinase LTQ03_01445 PF09190 DALR domain LTQ03_01445 PF01406 tRNA synthetases class I (C) catalytic domain LTQ03_01450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ03_01455 PF00149 Calcineurin-like phosphoesterase LTQ03_01460 PF00563 EAL domain LTQ03_01460 PF08668 HDOD domain LTQ03_01465 PF02810 SEC-C motif LTQ03_01470 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LTQ03_01470 PF01502 Phosphoribosyl-AMP cyclohydrolase LTQ03_01475 PF00977 Histidine biosynthesis protein LTQ03_01480 PF00977 Histidine biosynthesis protein LTQ03_01485 PF00117 Glutamine amidotransferase class-I LTQ03_01490 PF00475 Imidazoleglycerol-phosphate dehydratase LTQ03_01490 PF08645 Polynucleotide kinase 3 phosphatase LTQ03_01495 PF00155 Aminotransferase class I and II LTQ03_01500 PF00815 Histidinol dehydrogenase LTQ03_01505 PF08029 HisG, C-terminal domain LTQ03_01505 PF01634 ATP phosphoribosyltransferase LTQ03_01510 PF03553 Na+/H+ antiporter family LTQ03_01515 PF00816 H-NS histone family LTQ03_01525 PF00294 pfkB family carbohydrate kinase LTQ03_01540 PF04356 Protein of unknown function (DUF489) LTQ03_01545 PF08328 Adenylosuccinate lyase C-terminal LTQ03_01545 PF00206 Lyase LTQ03_01550 PF01435 Peptidase family M48 LTQ03_01565 PF08241 Methyltransferase domain LTQ03_01570 PF00155 Aminotransferase class I and II LTQ03_01575 PF06968 Biotin and Thiamin Synthesis associated domain LTQ03_01575 PF04055 Radical SAM superfamily LTQ03_01580 PF00202 Aminotransferase class-III LTQ03_01585 PF01258 Prokaryotic dksA/traR C4-type zinc finger LTQ03_01590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ03_01590 PF02403 Seryl-tRNA synthetase N-terminal domain LTQ03_01595 PF16193 AAA C-terminal domain LTQ03_01595 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_01595 PF12002 MgsA AAA+ ATPase C terminal LTQ03_01600 PF03548 Outer membrane lipoprotein carrier protein LolA LTQ03_01605 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LTQ03_01605 PF17854 FtsK alpha domain LTQ03_01605 PF09397 Ftsk gamma domain LTQ03_01605 PF01580 FtsK/SpoIIIE family LTQ03_01610 PF01037 Lrp/AsnC ligand binding domain LTQ03_01615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LTQ03_01615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LTQ03_01630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_01630 PF03466 LysR substrate binding domain LTQ03_01640 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LTQ03_01645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LTQ03_01650 PF18073 Rubredoxin metal binding domain LTQ03_01655 PF06305 Lipopolysaccharide assembly protein A domain LTQ03_01660 PF00216 Bacterial DNA-binding protein LTQ03_01665 PF00575 S1 RNA binding domain LTQ03_01670 PF02224 Cytidylate kinase LTQ03_01675 PF02348 Cytidylyltransferase LTQ03_01680 PF03966 Trm112p-like protein LTQ03_01685 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LTQ03_01690 PF00664 ABC transporter transmembrane region LTQ03_01690 PF00005 ABC transporter LTQ03_01695 PF03772 Competence protein LTQ03_01695 PF00753 Metallo-beta-lactamase superfamily LTQ03_01705 PF02687 FtsX-like permease family LTQ03_01705 PF12704 MacB-like periplasmic core domain LTQ03_01710 PF00005 ABC transporter LTQ03_01715 PF02687 FtsX-like permease family LTQ03_01715 PF12704 MacB-like periplasmic core domain LTQ03_01725 PF17757 UvrB interaction domain LTQ03_01725 PF02559 CarD-like/TRCF domain LTQ03_01725 PF00270 DEAD/DEAH box helicase LTQ03_01725 PF00271 Helicase conserved C-terminal domain LTQ03_01725 PF03461 TRCF domain LTQ03_01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_01745 PF05728 Uncharacterised protein family (UPF0227) LTQ03_01755 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LTQ03_01755 PF13036 Peptidoglycan-synthase activator LpoB LTQ03_01770 PF01230 HIT domain LTQ03_01775 PF00672 HAMP domain LTQ03_01775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_01785 PF01048 Phosphorylase superfamily LTQ03_01790 PF00403 Heavy-metal-associated domain LTQ03_01795 PF01554 MatE LTQ03_01800 PF00571 CBS domain LTQ03_01800 PF01743 Poly A polymerase head domain LTQ03_01815 PF02885 Glycosyl transferase family, helical bundle domain LTQ03_01815 PF00591 Glycosyl transferase family, a/b domain LTQ03_01830 PF01323 DSBA-like thioredoxin domain LTQ03_01835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ03_01860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ03_01865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_01870 PF03466 LysR substrate binding domain LTQ03_01875 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ03_01895 PF14864 Alkyl sulfatase C-terminal LTQ03_01895 PF14863 Alkyl sulfatase dimerisation LTQ03_01895 PF00753 Metallo-beta-lactamase superfamily LTQ03_01905 PF01040 UbiA prenyltransferase family LTQ03_01910 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LTQ03_01915 PF00510 Cytochrome c oxidase subunit III LTQ03_01920 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ03_01925 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LTQ03_01925 PF06481 COX Aromatic Rich Motif LTQ03_01930 PF00873 AcrB/AcrD/AcrF family LTQ03_01940 PF17932 Tetracyclin repressor-like, C-terminal domain LTQ03_01940 PF00440 Bacterial regulatory proteins, tetR family LTQ03_01945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_01945 PF03466 LysR substrate binding domain LTQ03_01950 PF08803 Putative mono-oxygenase ydhR LTQ03_01960 PF08212 Lipocalin-like domain LTQ03_01965 PF10114 Sensory domain found in PocR LTQ03_01965 PF12833 Helix-turn-helix domain LTQ03_01975 PF01979 Amidohydrolase family LTQ03_01990 PF13382 Adenine deaminase C-terminal domain LTQ03_01990 PF01979 Amidohydrolase family LTQ03_02000 PF00085 Thioredoxin LTQ03_02005 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ03_02005 PF11412 Disulphide bond corrector protein DsbC LTQ03_02015 PF01425 Amidase LTQ03_02025 PF12833 Helix-turn-helix domain LTQ03_02025 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ03_02030 PF00892 EamA-like transporter family LTQ03_02040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_02040 PF03466 LysR substrate binding domain LTQ03_02060 PF02833 DHHA2 domain LTQ03_02060 PF01368 DHH family LTQ03_02065 PF05036 Sporulation related domain LTQ03_02065 PF03330 Lytic transglycolase LTQ03_02070 PF00860 Permease family LTQ03_02080 PF10417 C-terminal domain of 1-Cys peroxiredoxin LTQ03_02080 PF00578 AhpC/TSA family LTQ03_02085 PF13192 Thioredoxin domain LTQ03_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_02090 PF01810 LysE type translocator LTQ03_02095 PF01037 Lrp/AsnC ligand binding domain LTQ03_02100 PF03313 Serine dehydratase alpha chain LTQ03_02100 PF03315 Serine dehydratase beta chain LTQ03_02105 PF00474 Sodium:solute symporter family LTQ03_02110 PF07690 Major Facilitator Superfamily LTQ03_02125 PF00356 Bacterial regulatory proteins, lacI family LTQ03_02130 PF00884 Sulfatase LTQ03_02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_02155 PF03466 LysR substrate binding domain LTQ03_02160 PF02056 Family 4 glycosyl hydrolase LTQ03_02160 PF11975 Family 4 glycosyl hydrolase C-terminal domain LTQ03_02165 PF04794 YdjC-like protein LTQ03_02170 PF00376 MerR family regulatory protein LTQ03_02170 PF09278 MerR, DNA binding LTQ03_02180 PF01645 Conserved region in glutamate synthase LTQ03_02195 PF03109 ABC1 family LTQ03_02200 PF00255 Glutathione peroxidase LTQ03_02235 PF00535 Glycosyl transferase family 2 LTQ03_02240 PF13439 Glycosyltransferase Family 4 LTQ03_02240 PF00534 Glycosyl transferases group 1 LTQ03_02245 PF01693 Caulimovirus viroplasmin LTQ03_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_02275 PF03466 LysR substrate binding domain LTQ03_02285 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_02300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ03_02305 PF09619 Type III secretion system lipoprotein chaperone (YscW) LTQ03_02320 PF01037 Lrp/AsnC ligand binding domain LTQ03_02320 PF13404 AsnC-type helix-turn-helix domain LTQ03_02325 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_02335 PF00873 AcrB/AcrD/AcrF family LTQ03_02340 PF13533 Biotin-lipoyl like LTQ03_02405 PF03601 Conserved hypothetical protein 698 LTQ03_02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_02415 PF03466 LysR substrate binding domain LTQ03_02420 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LTQ03_02420 PF00367 phosphotransferase system, EIIB LTQ03_02420 PF02378 Phosphotransferase system, EIIC LTQ03_02425 PF00501 AMP-binding enzyme LTQ03_02425 PF13193 AMP-binding enzyme C-terminal domain LTQ03_02430 PF13378 Enolase C-terminal domain-like LTQ03_02435 PF00378 Enoyl-CoA hydratase/isomerase LTQ03_02440 PF00561 alpha/beta hydrolase fold LTQ03_02445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_02445 PF16582 Middle domain of thiamine pyrophosphate LTQ03_02445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_02450 PF00425 chorismate binding enzyme LTQ03_02455 PF00155 Aminotransferase class I and II LTQ03_02465 PF01966 HD domain LTQ03_02465 PF13286 Phosphohydrolase-associated domain LTQ03_02485 PF13145 PPIC-type PPIASE domain LTQ03_02490 PF00216 Bacterial DNA-binding protein LTQ03_02495 PF02190 ATP-dependent protease La (LON) substrate-binding domain LTQ03_02495 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_02495 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ03_02500 PF07724 AAA domain (Cdc48 subfamily) LTQ03_02500 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ03_02500 PF06689 ClpX C4-type zinc finger LTQ03_02505 PF00574 Clp protease LTQ03_02510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_02510 PF05698 Bacterial trigger factor protein (TF) C-terminus LTQ03_02510 PF05697 Bacterial trigger factor protein (TF) LTQ03_02515 PF02743 Cache domain LTQ03_02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_02515 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_02520 PF00158 Sigma-54 interaction domain LTQ03_02520 PF02954 Bacterial regulatory protein, Fis family LTQ03_02520 PF00072 Response regulator receiver domain LTQ03_02530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_02535 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_02540 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_02550 PF01648 4'-phosphopantetheinyl transferase superfamily LTQ03_02555 PF16197 Ketoacyl-synthetase C-terminal extension LTQ03_02555 PF14765 Polyketide synthase dehydratase LTQ03_02555 PF00698 Acyl transferase domain LTQ03_02555 PF08659 KR domain LTQ03_02555 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_02555 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_02555 PF00550 Phosphopantetheine attachment site LTQ03_02565 PF00698 Acyl transferase domain LTQ03_02565 PF16197 Ketoacyl-synthetase C-terminal extension LTQ03_02565 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_02565 PF08659 KR domain LTQ03_02565 PF00550 Phosphopantetheine attachment site LTQ03_02565 PF14765 Polyketide synthase dehydratase LTQ03_02565 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_02570 PF00698 Acyl transferase domain LTQ03_02570 PF03060 Nitronate monooxygenase LTQ03_02575 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_02575 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_02575 PF01610 Transposase LTQ03_02580 PF13167 GTP-binding GTPase N-terminal LTQ03_02580 PF01926 50S ribosome-binding GTPase LTQ03_02580 PF16360 GTP-binding GTPase Middle Region LTQ03_02585 PF03459 TOBE domain LTQ03_02585 PF00005 ABC transporter LTQ03_02585 PF17912 MalK OB fold domain LTQ03_02590 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_02595 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_02600 PF01547 Bacterial extracellular solute-binding protein LTQ03_02605 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_02605 PF00672 HAMP domain LTQ03_02610 PF00072 Response regulator receiver domain LTQ03_02610 PF00486 Transcriptional regulatory protein, C terminal LTQ03_02615 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LTQ03_02620 PF01810 LysE type translocator LTQ03_02625 PF05175 Methyltransferase small domain LTQ03_02630 PF01713 Smr domain LTQ03_02635 PF00300 Histidine phosphatase superfamily (branch 1) LTQ03_02640 PF16187 Middle or third domain of peptidase_M16 LTQ03_02640 PF05193 Peptidase M16 inactive domain LTQ03_02640 PF00675 Insulinase (Peptidase family M16) LTQ03_02645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LTQ03_02645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LTQ03_02645 PF00378 Enoyl-CoA hydratase/isomerase LTQ03_02650 PF00108 Thiolase, N-terminal domain LTQ03_02650 PF02803 Thiolase, C-terminal domain LTQ03_02655 PF08281 Sigma-70, region 4 LTQ03_02655 PF04542 Sigma-70 region 2 LTQ03_02665 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ03_02670 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ03_02675 PF04333 MlaA lipoprotein LTQ03_02680 PF03918 Cytochrome C biogenesis protein LTQ03_02685 PF03918 Cytochrome C biogenesis protein LTQ03_02690 PF08534 Redoxin LTQ03_02695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LTQ03_02695 PF01578 Cytochrome C assembly protein LTQ03_02700 PF03100 CcmE LTQ03_02705 PF04995 Heme exporter protein D (CcmD) LTQ03_02710 PF01578 Cytochrome C assembly protein LTQ03_02715 PF03379 CcmB protein LTQ03_02720 PF00005 ABC transporter LTQ03_02730 PF01584 CheW-like domain LTQ03_02740 PF13614 AAA domain LTQ03_02745 PF00072 Response regulator receiver domain LTQ03_02745 PF01339 CheB methylesterase LTQ03_02750 PF02895 Signal transducing histidine kinase, homodimeric domain LTQ03_02750 PF00072 Response regulator receiver domain LTQ03_02750 PF01584 CheW-like domain LTQ03_02750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_02750 PF01627 Hpt domain LTQ03_02755 PF04344 Chemotaxis phosphatase, CheZ LTQ03_02760 PF00072 Response regulator receiver domain LTQ03_02765 PF04542 Sigma-70 region 2 LTQ03_02765 PF04539 Sigma-70 region 3 LTQ03_02765 PF04545 Sigma-70, region 4 LTQ03_02770 PF10609 NUBPL iron-transfer P-loop NTPase LTQ03_02775 PF00448 SRP54-type protein, GTPase domain LTQ03_02780 PF00771 FHIPEP family LTQ03_02785 PF01312 FlhB HrpN YscU SpaS Family LTQ03_02790 PF01311 Bacterial export proteins, family 1 LTQ03_02795 PF01313 Bacterial export proteins, family 3 LTQ03_02800 PF00813 FliP family LTQ03_02805 PF04347 Flagellar biosynthesis protein, FliO LTQ03_02810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LTQ03_02815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LTQ03_02815 PF02154 Flagellar motor switch protein FliM LTQ03_02835 PF18269 T3SS EscN ATPase C-terminal domain LTQ03_02835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_02845 PF14841 FliG middle domain LTQ03_02845 PF01706 FliG C-terminal domain LTQ03_02845 PF14842 FliG N-terminal domain LTQ03_02850 PF01514 Secretory protein of YscJ/FliF family LTQ03_02850 PF08345 Flagellar M-ring protein C-terminal LTQ03_02855 PF02049 Flagellar hook-basal body complex protein FliE LTQ03_02860 PF02954 Bacterial regulatory protein, Fis family LTQ03_02860 PF00158 Sigma-54 interaction domain LTQ03_02860 PF00072 Response regulator receiver domain LTQ03_02865 PF13188 PAS domain LTQ03_02865 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_02870 PF06490 Flagellar regulatory protein FleQ LTQ03_02870 PF02954 Bacterial regulatory protein, Fis family LTQ03_02870 PF00158 Sigma-54 interaction domain LTQ03_02875 PF02561 Flagellar protein FliS LTQ03_02885 PF02465 Flagellar hook-associated protein 2 N-terminus LTQ03_02885 PF07195 Flagellar hook-associated protein 2 C-terminus LTQ03_02885 PF07196 Flagellin hook IN motif LTQ03_02890 PF03646 FlaG protein LTQ03_02895 PF00700 Bacterial flagellin C-terminal helical region LTQ03_02895 PF00669 Bacterial flagellin N-terminal helical region LTQ03_02895 PF07196 Flagellin hook IN motif LTQ03_02900 PF00669 Bacterial flagellin N-terminal helical region LTQ03_02900 PF07196 Flagellin hook IN motif LTQ03_02900 PF00700 Bacterial flagellin C-terminal helical region LTQ03_02905 PF07196 Flagellin hook IN motif LTQ03_02905 PF00669 Bacterial flagellin N-terminal helical region LTQ03_02905 PF00700 Bacterial flagellin C-terminal helical region LTQ03_02915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ03_02915 PF07196 Flagellin hook IN motif LTQ03_02920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LTQ03_02920 PF10135 Rod binding protein LTQ03_02925 PF02119 Flagellar P-ring protein LTQ03_02930 PF02107 Flagellar L-ring protein LTQ03_02935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ03_02935 PF00460 Flagella basal body rod protein LTQ03_02940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ03_02940 PF00460 Flagella basal body rod protein LTQ03_02945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ03_02945 PF00460 Flagella basal body rod protein LTQ03_02945 PF07559 Flagellar basal body protein FlaE LTQ03_02950 PF03963 Flagellar hook capping protein - N-terminal region LTQ03_02950 PF13860 FlgD Ig-like domain LTQ03_02950 PF13861 FlgD Tudor-like domain LTQ03_02955 PF00460 Flagella basal body rod protein LTQ03_02955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ03_02960 PF00460 Flagella basal body rod protein LTQ03_02965 PF01739 CheR methyltransferase, SAM binding domain LTQ03_02965 PF03705 CheR methyltransferase, all-alpha domain LTQ03_02970 PF01584 CheW-like domain LTQ03_02970 PF00072 Response regulator receiver domain LTQ03_02975 PF13144 Chaperone for flagella basal body P-ring formation LTQ03_03010 PF04820 Tryptophan halogenase LTQ03_03035 PF00550 Phosphopantetheine attachment site LTQ03_03040 PF00550 Phosphopantetheine attachment site LTQ03_03050 PF13193 AMP-binding enzyme C-terminal domain LTQ03_03050 PF00501 AMP-binding enzyme LTQ03_03060 PF00535 Glycosyl transferase family 2 LTQ03_03065 PF00221 Aromatic amino acid lyase LTQ03_03090 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_03090 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_03105 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_03105 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_03110 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ03_03115 PF00403 Heavy-metal-associated domain LTQ03_03130 PF00728 Glycosyl hydrolase family 20, catalytic domain LTQ03_03130 PF02838 Glycosyl hydrolase family 20, domain 2 LTQ03_03130 PF03173 Putative carbohydrate binding domain LTQ03_03130 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LTQ03_03155 PF01713 Smr domain LTQ03_03160 PF01479 S4 domain LTQ03_03160 PF00849 RNA pseudouridylate synthase LTQ03_03165 PF04073 Aminoacyl-tRNA editing domain LTQ03_03170 PF00149 Calcineurin-like phosphoesterase LTQ03_03170 PF02872 5'-nucleotidase, C-terminal domain LTQ03_03175 PF00793 DAHP synthetase I family LTQ03_03180 PF13369 Transglutaminase-like superfamily LTQ03_03185 PF04247 Invasion gene expression up-regulator, SirB LTQ03_03190 PF13847 Methyltransferase domain LTQ03_03190 PF17827 PrmC N-terminal domain LTQ03_03195 PF00472 RF-1 domain LTQ03_03195 PF03462 PCRF domain LTQ03_03200 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LTQ03_03200 PF01488 Shikimate / quinate 5-dehydrogenase LTQ03_03200 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LTQ03_03205 PF03550 Outer membrane lipoprotein LolB LTQ03_03210 PF08544 GHMP kinases C terminal LTQ03_03210 PF00288 GHMP kinases N terminal domain LTQ03_03215 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LTQ03_03215 PF14572 Phosphoribosyl synthetase-associated domain LTQ03_03220 PF01195 Peptidyl-tRNA hydrolase LTQ03_03225 PF01926 50S ribosome-binding GTPase LTQ03_03225 PF06071 Protein of unknown function (DUF933) LTQ03_03315 PF10282 Lactonase, 7-bladed beta-propeller LTQ03_03320 PF01494 FAD binding domain LTQ03_03325 PF01938 TRAM domain LTQ03_03325 PF00919 Uncharacterized protein family UPF0004 LTQ03_03325 PF04055 Radical SAM superfamily LTQ03_03330 PF02562 PhoH-like protein LTQ03_03335 PF02130 Uncharacterized protein family UPF0054 LTQ03_03340 PF00571 CBS domain LTQ03_03340 PF03471 Transporter associated domain LTQ03_03345 PF00795 Carbon-nitrogen hydrolase LTQ03_03350 PF07295 Zinc-ribbon containing domain LTQ03_03355 PF08264 Anticodon-binding domain of tRNA LTQ03_03355 PF13603 Leucyl-tRNA synthetase, Domain 2 LTQ03_03355 PF00133 tRNA synthetases class I (I, L, M and V) LTQ03_03360 PF04390 Lipopolysaccharide-assembly LTQ03_03365 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LTQ03_03365 PF06144 DNA polymerase III, delta subunit LTQ03_03375 PF02590 Predicted SPOUT methyltransferase LTQ03_03380 PF03717 Penicillin-binding Protein dimerisation domain LTQ03_03380 PF00905 Penicillin binding protein transpeptidase domain LTQ03_03385 PF01098 Cell cycle protein LTQ03_03390 PF03330 Lytic transglycolase LTQ03_03390 PF05036 Sporulation related domain LTQ03_03395 PF07943 Penicillin-binding protein 5, C-terminal domain LTQ03_03395 PF00768 D-alanyl-D-alanine carboxypeptidase LTQ03_03400 PF04359 Protein of unknown function (DUF493) LTQ03_03405 PF03099 Biotin/lipoate A/B protein ligase family LTQ03_03410 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LTQ03_03410 PF04055 Radical SAM superfamily LTQ03_03415 PF00209 Sodium:neurotransmitter symporter family LTQ03_03430 PF00270 DEAD/DEAH box helicase LTQ03_03430 PF00271 Helicase conserved C-terminal domain LTQ03_03430 PF00570 HRDC domain LTQ03_03430 PF16124 RecQ zinc-binding LTQ03_03430 PF09382 RQC domain LTQ03_03435 PF11798 IMS family HHH motif LTQ03_03435 PF11799 impB/mucB/samB family C-terminal domain LTQ03_03435 PF00817 impB/mucB/samB family LTQ03_03440 PF00072 Response regulator receiver domain LTQ03_03440 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_03445 PF04400 (Na+)-NQR maturation NqrM LTQ03_03450 PF02424 ApbE family LTQ03_03455 PF00175 Oxidoreductase NAD-binding domain LTQ03_03455 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_03455 PF00970 Oxidoreductase FAD-binding domain LTQ03_03460 PF02508 Rnf-Nqr subunit, membrane protein LTQ03_03465 PF02508 Rnf-Nqr subunit, membrane protein LTQ03_03470 PF04205 FMN-binding domain LTQ03_03475 PF03116 NQR2, RnfD, RnfE family LTQ03_03480 PF11973 NQRA C-terminal domain LTQ03_03480 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LTQ03_03485 PF01722 BolA-like protein LTQ03_03490 PF05175 Methyltransferase small domain LTQ03_03500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ03_03505 PF07690 Major Facilitator Superfamily LTQ03_03515 PF03502 Nucleoside-specific channel-forming protein, Tsx LTQ03_03520 PF02558 Ketopantoate reductase PanE/ApbA LTQ03_03520 PF08546 Ketopantoate reductase PanE/ApbA C terminal LTQ03_03525 PF00266 Aminotransferase class-V LTQ03_03530 PF02657 Fe-S metabolism associated domain LTQ03_03535 PF00899 ThiF family LTQ03_03540 PF06725 3D domain LTQ03_03540 PF03562 MltA specific insert domain LTQ03_03550 PF00583 Acetyltransferase (GNAT) family LTQ03_03550 PF00696 Amino acid kinase family LTQ03_03560 PF13538 UvrD-like helicase C-terminal domain LTQ03_03565 PF12705 PD-(D/E)XK nuclease superfamily LTQ03_03565 PF00580 UvrD/REP helicase N-terminal domain LTQ03_03565 PF13361 UvrD-like helicase C-terminal domain LTQ03_03575 PF17946 RecC C-terminal domain LTQ03_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_03585 PF03466 LysR substrate binding domain LTQ03_03590 PF07130 YebG protein LTQ03_03605 PF01914 MarC family integral membrane protein LTQ03_03610 PF14602 Hexapeptide repeat of succinyl-transferase LTQ03_03610 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LTQ03_03620 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LTQ03_03620 PF02769 AIR synthase related protein, C-terminal domain LTQ03_03620 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LTQ03_03625 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_03625 PF01464 Transglycosylase SLT domain LTQ03_03630 PF14437 MafB19-like deaminase LTQ03_03635 PF00571 CBS domain LTQ03_03635 PF03471 Transporter associated domain LTQ03_03635 PF01595 Cyclin M transmembrane N-terminal domain LTQ03_03640 PF03806 AbgT putative transporter family LTQ03_03675 PF00226 DnaJ domain LTQ03_03675 PF01556 DnaJ C terminal domain LTQ03_03675 PF00684 DnaJ central domain LTQ03_03680 PF00012 Hsp70 protein LTQ03_03690 PF00375 Sodium:dicarboxylate symporter family LTQ03_03695 PF01025 GrpE LTQ03_03700 PF01513 ATP-NAD kinase LTQ03_03705 PF02463 RecF/RecN/SMC N terminal domain LTQ03_03710 PF04355 SmpA / OmlA family LTQ03_03715 PF03658 RnfH family Ubiquitin LTQ03_03720 PF03364 Polyketide cyclase / dehydrase and lipid transport LTQ03_03725 PF01668 SmpB protein LTQ03_03735 PF08443 RimK-like ATP-grasp domain LTQ03_03735 PF18030 RimK PreATP-grasp domain LTQ03_03750 PF04143 Sulphur transport LTQ03_03760 PF01553 Acyltransferase LTQ03_03765 PF10996 Beta-Casp domain LTQ03_03765 PF00753 Metallo-beta-lactamase superfamily LTQ03_03765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LTQ03_03770 PF01235 Sodium:alanine symporter family LTQ03_03775 PF01184 GPR1/FUN34/yaaH family LTQ03_03780 PF03553 Na+/H+ antiporter family LTQ03_03785 PF06483 Chitinase C LTQ03_03785 PF00704 Glycosyl hydrolases family 18 LTQ03_03790 PF02540 NAD synthase LTQ03_03790 PF00958 GMP synthase C terminal domain LTQ03_03790 PF00117 Glutamine amidotransferase class-I LTQ03_03795 PF00478 IMP dehydrogenase / GMP reductase domain LTQ03_03795 PF00571 CBS domain LTQ03_03800 PF02601 Exonuclease VII, large subunit LTQ03_03800 PF13742 OB-fold nucleic acid binding domain LTQ03_03805 PF02492 CobW/HypB/UreG, nucleotide-binding domain LTQ03_03810 PF01730 UreF LTQ03_03820 PF05194 UreE urease accessory protein, C-terminal domain LTQ03_03820 PF02814 UreE urease accessory protein, N-terminal domain LTQ03_03825 PF01979 Amidohydrolase family LTQ03_03825 PF00449 Urease alpha-subunit, N-terminal domain LTQ03_03830 PF00699 Urease beta subunit LTQ03_03835 PF00547 Urease, gamma subunit LTQ03_03840 PF01774 UreD urease accessory protein LTQ03_03845 PF00005 ABC transporter LTQ03_03850 PF12399 Branched-chain amino acid ATP-binding cassette transporter LTQ03_03850 PF00005 ABC transporter LTQ03_03860 PF02653 Branched-chain amino acid transport system / permease component LTQ03_03875 PF08448 PAS fold LTQ03_03875 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_03880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LTQ03_03880 PF01411 tRNA synthetases class II (A) LTQ03_03880 PF02272 DHHA1 domain LTQ03_03885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LTQ03_03885 PF01926 50S ribosome-binding GTPase LTQ03_03890 PF13360 PQQ-like domain LTQ03_03895 PF09976 Tetratricopeptide repeat-like domain LTQ03_03900 PF03129 Anticodon binding domain LTQ03_03900 PF13393 Histidyl-tRNA synthetase LTQ03_03905 PF04551 GcpE protein LTQ03_03910 PF13464 Domain of unknown function (DUF4115) LTQ03_03915 PF04055 Radical SAM superfamily LTQ03_03920 PF00334 Nucleoside diphosphate kinase LTQ03_03925 PF12404 Peptidase LTQ03_03925 PF00883 Cytosol aminopeptidase family, catalytic domain LTQ03_03930 PF04384 Iron-sulphur cluster assembly LTQ03_03935 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_03940 PF00012 Hsp70 protein LTQ03_03945 PF00226 DnaJ domain LTQ03_03945 PF07743 HSCB C-terminal oligomerisation domain LTQ03_03950 PF01521 Iron-sulphur cluster biosynthesis LTQ03_03955 PF01592 NifU-like N terminal domain LTQ03_03960 PF00266 Aminotransferase class-V LTQ03_03965 PF02082 Transcriptional regulator LTQ03_03970 PF00588 SpoU rRNA Methylase family LTQ03_03975 PF00459 Inositol monophosphatase family LTQ03_03980 PF07549 SecD/SecF GG Motif LTQ03_03980 PF02355 Protein export membrane protein LTQ03_03985 PF07549 SecD/SecF GG Motif LTQ03_03985 PF13721 SecD export protein N-terminal TM region LTQ03_03985 PF02355 Protein export membrane protein LTQ03_03990 PF02699 Preprotein translocase subunit LTQ03_03995 PF01702 Queuine tRNA-ribosyltransferase LTQ03_04000 PF02547 Queuosine biosynthesis protein LTQ03_04005 PF00571 CBS domain LTQ03_04010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_04015 PF03466 LysR substrate binding domain LTQ03_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_04020 PF10417 C-terminal domain of 1-Cys peroxiredoxin LTQ03_04020 PF00578 AhpC/TSA family LTQ03_04025 PF03932 CutC family LTQ03_04030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_04030 PF03466 LysR substrate binding domain LTQ03_04045 PF01895 PhoU domain LTQ03_04050 PF00005 ABC transporter LTQ03_04055 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_04060 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_04065 PF17941 Polyphosphate kinase C-terminal domain 1 LTQ03_04065 PF13089 Polyphosphate kinase N-terminal domain LTQ03_04065 PF02503 Polyphosphate kinase middle domain LTQ03_04065 PF13090 Polyphosphate kinase C-terminal domain 2 LTQ03_04070 PF02541 Ppx/GppA phosphatase family LTQ03_04075 PF12849 PBP superfamily domain LTQ03_04080 PF11808 Phosphate regulon sensor protein PhoR LTQ03_04080 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_04080 PF00989 PAS fold LTQ03_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_04085 PF00072 Response regulator receiver domain LTQ03_04085 PF00486 Transcriptional regulatory protein, C terminal LTQ03_04090 PF04381 Putative exonuclease, RdgC LTQ03_04100 PF00962 Adenosine/AMP deaminase LTQ03_04105 PF00860 Permease family LTQ03_04110 PF01136 Peptidase family U32 LTQ03_04110 PF16325 Peptidase family U32 C-terminal domain LTQ03_04115 PF12838 4Fe-4S dicluster domain LTQ03_04125 PF03411 Penicillin-insensitive murein endopeptidase LTQ03_04130 PF01610 Transposase LTQ03_04130 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_04130 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_04170 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ03_04170 PF07724 AAA domain (Cdc48 subfamily) LTQ03_04170 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_04170 PF02861 Clp amino terminal domain, pathogenicity island component LTQ03_04170 PF17871 AAA lid domain LTQ03_04175 PF02578 Multi-copper polyphenol oxidoreductase laccase LTQ03_04180 PF00849 RNA pseudouridylate synthase LTQ03_04180 PF01479 S4 domain LTQ03_04185 PF13525 Outer membrane lipoprotein LTQ03_04190 PF01464 Transglycosylase SLT domain LTQ03_04190 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_04195 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LTQ03_04200 PF00800 Prephenate dehydratase LTQ03_04200 PF01817 Chorismate mutase type II LTQ03_04205 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_04205 PF00563 EAL domain LTQ03_04210 PF01931 Protein of unknown function DUF84 LTQ03_04215 PF01371 Trp repressor protein LTQ03_04220 PF14718 Soluble lytic murein transglycosylase L domain LTQ03_04220 PF01464 Transglycosylase SLT domain LTQ03_04225 PF12848 ABC transporter LTQ03_04225 PF00005 ABC transporter LTQ03_04230 PF07238 PilZ domain LTQ03_04235 PF01551 Peptidase family M23 LTQ03_04235 PF04225 Opacity-associated protein A LysM-like domain LTQ03_04240 PF02153 Prephenate dehydrogenase LTQ03_04240 PF01817 Chorismate mutase type II LTQ03_04245 PF00793 DAHP synthetase I family LTQ03_04250 PF00933 Glycosyl hydrolase family 3 N terminal domain LTQ03_04255 PF03702 Anhydro-N-acetylmuramic acid kinase LTQ03_04260 PF13580 SIS domain LTQ03_04270 PF02554 Carbon starvation protein CstA LTQ03_04275 PF07694 5TMR of 5TMR-LYT LTQ03_04275 PF06580 Histidine kinase LTQ03_04280 PF04397 LytTr DNA-binding domain LTQ03_04280 PF00072 Response regulator receiver domain LTQ03_04285 PF02401 LytB protein LTQ03_04290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_04295 PF01252 Signal peptidase (SPase) II LTQ03_04300 PF08264 Anticodon-binding domain of tRNA LTQ03_04300 PF00133 tRNA synthetases class I (I, L, M and V) LTQ03_04300 PF06827 Zinc finger found in FPG and IleRS LTQ03_04305 PF06574 FAD synthetase LTQ03_04305 PF01687 Riboflavin kinase LTQ03_04310 PF03023 Lipid II flippase MurJ LTQ03_04315 PF01649 Ribosomal protein S20 LTQ03_04320 PF01022 Bacterial regulatory protein, arsR family LTQ03_04325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_04325 PF03466 LysR substrate binding domain LTQ03_04330 PF02690 Na+/Pi-cotransporter LTQ03_04340 PF00072 Response regulator receiver domain LTQ03_04340 PF00486 Transcriptional regulatory protein, C terminal LTQ03_04345 PF00303 Thymidylate synthase LTQ03_04350 PF01790 Prolipoprotein diacylglyceryl transferase LTQ03_04355 PF01925 Sulfite exporter TauE/SafE LTQ03_04365 PF00293 NUDIX domain LTQ03_04370 PF02976 DNA mismatch repair enzyme MutH LTQ03_04385 PF06505 Activator of aromatic catabolism LTQ03_04385 PF02830 V4R domain LTQ03_04385 PF00158 Sigma-54 interaction domain LTQ03_04385 PF02954 Bacterial regulatory protein, Fis family LTQ03_04390 PF01336 OB-fold nucleic acid binding domain LTQ03_04390 PF00152 tRNA synthetases class II (D, K and N) LTQ03_04400 PF17768 RecJ OB domain LTQ03_04400 PF02272 DHHA1 domain LTQ03_04400 PF01368 DHH family LTQ03_04405 PF10411 Disulfide bond isomerase protein N-terminus LTQ03_04405 PF13098 Thioredoxin-like domain LTQ03_04410 PF02899 Phage integrase, N-terminal SAM-like domain LTQ03_04410 PF00589 Phage integrase family LTQ03_04415 PF00258 Flavodoxin LTQ03_04420 PF05525 Branched-chain amino acid transport protein LTQ03_04425 PF05175 Methyltransferase small domain LTQ03_04430 PF00270 DEAD/DEAH box helicase LTQ03_04430 PF00271 Helicase conserved C-terminal domain LTQ03_04435 PF03883 Peroxide stress protein YaaA LTQ03_04440 PF01235 Sodium:alanine symporter family LTQ03_04455 PF03167 Uracil DNA glycosylase superfamily LTQ03_04460 PF01261 Xylose isomerase-like TIM barrel LTQ03_04465 PF01228 Glycine radical LTQ03_04470 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_04470 PF14821 Threonine synthase N terminus LTQ03_04475 PF00288 GHMP kinases N terminal domain LTQ03_04475 PF08544 GHMP kinases C terminal LTQ03_04480 PF01842 ACT domain LTQ03_04480 PF00742 Homoserine dehydrogenase LTQ03_04480 PF03447 Homoserine dehydrogenase, NAD binding domain LTQ03_04480 PF13840 ACT domain LTQ03_04480 PF00696 Amino acid kinase family LTQ03_04490 PF03737 Aldolase/RraA LTQ03_04495 PF00072 Response regulator receiver domain LTQ03_04495 PF00486 Transcriptional regulatory protein, C terminal LTQ03_04505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_04505 PF00072 Response regulator receiver domain LTQ03_04505 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_04505 PF01627 Hpt domain LTQ03_04505 PF18415 Histidine kinase receptor ArcB trans-membrane domain LTQ03_04505 PF00989 PAS fold LTQ03_04510 PF00563 EAL domain LTQ03_04510 PF01590 GAF domain LTQ03_04510 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_04510 PF00360 Phytochrome region LTQ03_04515 PF04055 Radical SAM superfamily LTQ03_04515 PF16199 Radical_SAM C-terminal domain LTQ03_04520 PF01493 GXGXG motif LTQ03_04520 PF01645 Conserved region in glutamate synthase LTQ03_04520 PF04898 Glutamate synthase central domain LTQ03_04520 PF00310 Glutamine amidotransferases class-II LTQ03_04525 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LTQ03_04525 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_04530 PF00310 Glutamine amidotransferases class-II LTQ03_04530 PF04898 Glutamate synthase central domain LTQ03_04530 PF01645 Conserved region in glutamate synthase LTQ03_04530 PF01493 GXGXG motif LTQ03_04535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LTQ03_04535 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_04545 PF01048 Phosphorylase superfamily LTQ03_04555 PF01497 Periplasmic binding protein LTQ03_04560 PF03458 UPF0126 domain LTQ03_04565 PF02281 Transposase Tn5 dimerisation domain LTQ03_04565 PF14706 Transposase DNA-binding LTQ03_04565 PF01609 Transposase DDE domain LTQ03_04575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_04575 PF03466 LysR substrate binding domain LTQ03_04580 PF01925 Sulfite exporter TauE/SafE LTQ03_04585 PF02142 MGS-like domain LTQ03_04585 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LTQ03_04585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LTQ03_04590 PF00117 Glutamine amidotransferase class-I LTQ03_04590 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LTQ03_04595 PF01113 Dihydrodipicolinate reductase, N-terminus LTQ03_04595 PF05173 Dihydrodipicolinate reductase, C-terminus LTQ03_04600 PF00293 NUDIX domain LTQ03_04605 PF07517 SecA DEAD-like domain LTQ03_04605 PF01043 SecA preprotein cross-linking domain LTQ03_04605 PF07516 SecA Wing and Scaffold domain LTQ03_04605 PF02810 SEC-C motif LTQ03_04610 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LTQ03_04615 PF12327 FtsZ family, C-terminal domain LTQ03_04615 PF00091 Tubulin/FtsZ family, GTPase domain LTQ03_04620 PF02491 SHS2 domain inserted in FTSA LTQ03_04625 PF08478 POTRA domain, FtsQ-type LTQ03_04625 PF03799 Cell division protein FtsQ LTQ03_04630 PF08245 Mur ligase middle domain LTQ03_04630 PF01225 Mur ligase family, catalytic domain LTQ03_04630 PF02875 Mur ligase family, glutamate ligase domain LTQ03_04635 PF04101 Glycosyltransferase family 28 C-terminal domain LTQ03_04635 PF03033 Glycosyltransferase family 28 N-terminal domain LTQ03_04640 PF01098 Cell cycle protein LTQ03_04645 PF02875 Mur ligase family, glutamate ligase domain LTQ03_04645 PF08245 Mur ligase middle domain LTQ03_04650 PF00953 Glycosyl transferase family 4 LTQ03_04650 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LTQ03_04655 PF01225 Mur ligase family, catalytic domain LTQ03_04655 PF02875 Mur ligase family, glutamate ligase domain LTQ03_04655 PF08245 Mur ligase middle domain LTQ03_04660 PF01225 Mur ligase family, catalytic domain LTQ03_04660 PF08245 Mur ligase middle domain LTQ03_04660 PF02875 Mur ligase family, glutamate ligase domain LTQ03_04665 PF03717 Penicillin-binding Protein dimerisation domain LTQ03_04665 PF00905 Penicillin binding protein transpeptidase domain LTQ03_04670 PF04999 Cell division protein FtsL LTQ03_04675 PF01795 MraW methylase family LTQ03_04685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ03_04690 PF04348 LppC putative lipoprotein LTQ03_04695 PF02021 Uncharacterised protein family UPF0102 LTQ03_04700 PF13580 SIS domain LTQ03_04705 PF04972 BON domain LTQ03_04710 PF04386 Stringent starvation protein B LTQ03_04715 PF00043 Glutathione S-transferase, C-terminal domain LTQ03_04715 PF02798 Glutathione S-transferase, N-terminal domain LTQ03_04720 PF02167 Cytochrome C1 family LTQ03_04725 PF00033 Cytochrome b/b6/petB LTQ03_04725 PF00032 Cytochrome b(C-terminal)/b6/petD LTQ03_04730 PF00355 Rieske [2Fe-2S] domain LTQ03_04730 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LTQ03_04735 PF00380 Ribosomal protein S9/S16 LTQ03_04740 PF00572 Ribosomal protein L13 LTQ03_04745 PF03969 AFG1-like ATPase LTQ03_04750 PF06295 Protein of unknown function (DUF1043) LTQ03_04755 PF00595 PDZ domain LTQ03_04760 PF13180 PDZ domain LTQ03_04765 PF03989 DNA gyrase C-terminal domain, beta-propeller LTQ03_04765 PF00521 DNA gyrase/topoisomerase IV, subunit A LTQ03_04770 PF00204 DNA gyrase B LTQ03_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_04770 PF01751 Toprim domain LTQ03_04770 PF00986 DNA gyrase B subunit, carboxyl terminus LTQ03_04775 PF05728 Uncharacterised protein family (UPF0227) LTQ03_04780 PF00149 Calcineurin-like phosphoesterase LTQ03_04785 PF06853 Protein of unknown function (DUF1249) LTQ03_04790 PF00293 NUDIX domain LTQ03_04795 PF02321 Outer membrane efflux protein LTQ03_04800 PF01467 Cytidylyltransferase-like LTQ03_04800 PF00294 pfkB family carbohydrate kinase LTQ03_04805 PF08335 GlnD PII-uridylyltransferase LTQ03_04805 PF03710 Glutamate-ammonia ligase adenylyltransferase LTQ03_04810 PF02743 Cache domain LTQ03_04810 PF00672 HAMP domain LTQ03_04810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_04815 PF07885 Ion channel LTQ03_04820 PF01928 CYTH domain LTQ03_04825 PF01865 Protein of unknown function DUF47 LTQ03_04830 PF01384 Phosphate transporter family LTQ03_04835 PF08239 Bacterial SH3 domain LTQ03_04845 PF13401 AAA domain LTQ03_04845 PF01471 Putative peptidoglycan binding domain LTQ03_04850 PF01966 HD domain LTQ03_04850 PF01743 Poly A polymerase head domain LTQ03_04850 PF12627 Probable RNA and SrmB- binding site of polymerase A LTQ03_04855 PF02673 Bacitracin resistance protein BacA LTQ03_04860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ03_04865 PF02152 Dihydroneopterin aldolase LTQ03_04870 PF02660 Glycerol-3-phosphate acyltransferase LTQ03_04875 PF12697 Alpha/beta hydrolase family LTQ03_04880 PF00814 Glycoprotease family LTQ03_04885 PF01165 Ribosomal protein S21 LTQ03_04890 PF09424 Yqey-like protein LTQ03_04895 PF10410 DnaB-helicase binding domain of primase LTQ03_04895 PF08278 DNA primase DnaG DnaB-binding LTQ03_04895 PF08275 DNA primase catalytic core, N-terminal domain LTQ03_04895 PF01807 CHC2 zinc finger LTQ03_04900 PF04546 Sigma-70, non-essential region LTQ03_04900 PF03979 Sigma-70 factor, region 1.1 LTQ03_04900 PF00140 Sigma-70 factor, region 1.2 LTQ03_04900 PF04542 Sigma-70 region 2 LTQ03_04900 PF04539 Sigma-70 region 3 LTQ03_04900 PF04545 Sigma-70, region 4 LTQ03_04910 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ03_04915 PF01380 SIS domain LTQ03_04920 PF00455 DeoR C terminal sensor domain LTQ03_04920 PF08220 DeoR-like helix-turn-helix domain LTQ03_04925 PF02887 Pyruvate kinase, alpha/beta domain LTQ03_04925 PF00224 Pyruvate kinase, barrel domain LTQ03_04930 PF07729 FCD domain LTQ03_04930 PF00392 Bacterial regulatory proteins, gntR family LTQ03_04935 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_04935 PF17158 Membrane-associated sensor, integral membrane domain LTQ03_04940 PF10369 Small subunit of acetolactate synthase LTQ03_04945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_04945 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ03_04945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_04950 PF00501 AMP-binding enzyme LTQ03_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_04955 PF03466 LysR substrate binding domain LTQ03_04965 PF01569 PAP2 superfamily LTQ03_04970 PF00873 AcrB/AcrD/AcrF family LTQ03_04985 PF08502 LeuA allosteric (dimerisation) domain LTQ03_04985 PF00682 HMGL-like LTQ03_04990 PF00180 Isocitrate/isopropylmalate dehydrogenase LTQ03_04995 PF00330 Aconitase family (aconitate hydratase) LTQ03_05000 PF00694 Aconitase C-terminal domain LTQ03_05015 PF00226 DnaJ domain LTQ03_05015 PF05099 Tellurite resistance protein TerB LTQ03_05020 PF04453 LPS transport system D LTQ03_05020 PF03968 OstA-like protein LTQ03_05025 PF00639 PPIC-type PPIASE domain LTQ03_05025 PF09312 SurA N-terminal domain LTQ03_05030 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LTQ03_05035 PF00398 Ribosomal RNA adenine dimethylase LTQ03_05040 PF04379 ApaG domain LTQ03_05045 PF00149 Calcineurin-like phosphoesterase LTQ03_05050 PF00186 Dihydrofolate reductase LTQ03_05055 PF12821 Threonine/Serine exporter, ThrE LTQ03_05060 PF06738 Putative threonine/serine exporter LTQ03_05065 PF01926 50S ribosome-binding GTPase LTQ03_05065 PF01018 GTP1/OBG LTQ03_05070 PF01016 Ribosomal L27 protein LTQ03_05075 PF00829 Ribosomal prokaryotic L21 protein LTQ03_05080 PF00348 Polyprenyl synthetase LTQ03_05090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LTQ03_05090 PF00056 lactate/malate dehydrogenase, NAD binding domain LTQ03_05095 PF01316 Arginine repressor, DNA binding domain LTQ03_05095 PF02863 Arginine repressor, C-terminal domain LTQ03_05110 PF00582 Universal stress protein family LTQ03_05115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ03_05115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ03_05120 PF00849 RNA pseudouridylate synthase LTQ03_05130 PF18339 RapA N-terminal Tudor like domain 1 LTQ03_05130 PF18337 RapA N-terminal Tudor like domain LTQ03_05130 PF12137 RNA polymerase recycling family C-terminal LTQ03_05130 PF00176 SNF2 family N-terminal domain LTQ03_05130 PF00271 Helicase conserved C-terminal domain LTQ03_05135 PF13638 PIN domain LTQ03_05135 PF02562 PhoH-like protein LTQ03_05140 PF01523 Putative modulator of DNA gyrase LTQ03_05145 PF00795 Carbon-nitrogen hydrolase LTQ03_05155 PF10150 Ribonuclease E/G family LTQ03_05155 PF00575 S1 RNA binding domain LTQ03_05160 PF02545 Maf-like protein LTQ03_05165 PF04093 rod shape-determining protein MreD LTQ03_05170 PF04085 rod shape-determining protein MreC LTQ03_05210 PF07963 Prokaryotic N-terminal methylation motif LTQ03_05220 PF00482 Type II secretion system (T2SS), protein F LTQ03_05225 PF00437 Type II/IV secretion system protein LTQ03_05225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LTQ03_05235 PF01471 Putative peptidoglycan binding domain LTQ03_05235 PF13401 AAA domain LTQ03_05240 PF03958 Bacterial type II/III secretion system short domain LTQ03_05240 PF00263 Bacterial type II and III secretion system protein LTQ03_05240 PF07660 Secretin and TonB N terminus short domain LTQ03_05240 PF11741 AMIN domain LTQ03_05260 PF00563 EAL domain LTQ03_05260 PF17157 Gammaproteobacterial periplasmic sensor domain LTQ03_05260 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_05265 PF00436 Single-strand binding protein family LTQ03_05270 PF00196 Bacterial regulatory proteins, luxR family LTQ03_05275 PF00483 Nucleotidyl transferase LTQ03_05280 PF00005 ABC transporter LTQ03_05280 PF17755 UvrA DNA-binding domain LTQ03_05280 PF17760 UvrA interaction domain LTQ03_05290 PF00266 Aminotransferase class-V LTQ03_05295 PF01842 ACT domain LTQ03_05295 PF00696 Amino acid kinase family LTQ03_05300 PF02607 B12 binding domain LTQ03_05300 PF02965 Vitamin B12 dependent methionine synthase, activation domain LTQ03_05300 PF00809 Pterin binding enzyme LTQ03_05300 PF02574 Homocysteine S-methyltransferase LTQ03_05300 PF02310 B12 binding domain LTQ03_05305 PF00999 Sodium/hydrogen exchanger family LTQ03_05385 PF01507 Phosphoadenosine phosphosulfate reductase family LTQ03_05390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ03_05390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ03_05395 PF00667 FAD binding domain LTQ03_05395 PF00258 Flavodoxin LTQ03_05395 PF00175 Oxidoreductase NAD-binding domain LTQ03_05410 PF09583 Phage shock protein G (Phageshock_PspG) LTQ03_05415 PF01207 Dihydrouridine synthase (Dus) LTQ03_05420 PF03466 LysR substrate binding domain LTQ03_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_05430 PF01475 Ferric uptake regulator family LTQ03_05440 PF00342 Phosphoglucose isomerase LTQ03_05445 PF01894 Uncharacterised protein family UPF0047 LTQ03_05455 PF00842 Alanine racemase, C-terminal domain LTQ03_05455 PF01168 Alanine racemase, N-terminal domain LTQ03_05460 PF00772 DnaB-like helicase N terminal domain LTQ03_05460 PF03796 DnaB-like helicase C terminal domain LTQ03_05470 PF03948 Ribosomal protein L9, C-terminal domain LTQ03_05470 PF01281 Ribosomal protein L9, N-terminal domain LTQ03_05475 PF01084 Ribosomal protein S18 LTQ03_05480 PF01250 Ribosomal protein S6 LTQ03_05485 PF00588 SpoU rRNA Methylase family LTQ03_05485 PF08032 RNA 2'-O ribose methyltransferase substrate binding LTQ03_05490 PF00575 S1 RNA binding domain LTQ03_05490 PF08206 Ribonuclease B OB domain LTQ03_05490 PF08461 Ribonuclease R winged-helix domain LTQ03_05490 PF17876 Cold shock domain LTQ03_05490 PF00773 RNB domain LTQ03_05495 PF01979 Amidohydrolase family LTQ03_05500 PF08238 Sel1 repeat LTQ03_05505 PF00709 Adenylosuccinate synthetase LTQ03_05510 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LTQ03_05515 PF01145 SPFH domain / Band 7 family LTQ03_05520 PF01145 SPFH domain / Band 7 family LTQ03_05520 PF12221 Bacterial membrane protein N terminal LTQ03_05525 PF13167 GTP-binding GTPase N-terminal LTQ03_05525 PF01926 50S ribosome-binding GTPase LTQ03_05525 PF16360 GTP-binding GTPase Middle Region LTQ03_05530 PF17209 Hfq protein LTQ03_05540 PF01119 DNA mismatch repair protein, C-terminal domain LTQ03_05540 PF08676 MutL C terminal dimerisation domain LTQ03_05545 PF01520 N-acetylmuramoyl-L-alanine amidase LTQ03_05550 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LTQ03_05555 PF08331 Domain of unknown function (DUF1730) LTQ03_05645 PF00929 Exonuclease LTQ03_05650 PF03193 RsgA GTPase LTQ03_05655 PF02666 Phosphatidylserine decarboxylase LTQ03_05660 PF03600 Citrate transporter LTQ03_05660 PF02080 TrkA-C domain LTQ03_05665 PF00672 HAMP domain LTQ03_05665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_05675 PF00152 tRNA synthetases class II (D, K and N) LTQ03_05680 PF00890 FAD binding domain LTQ03_05680 PF02910 Fumarate reductase flavoprotein C-term LTQ03_05685 PF13183 4Fe-4S dicluster domain LTQ03_05685 PF13085 2Fe-2S iron-sulfur cluster binding domain LTQ03_05690 PF02300 Fumarate reductase subunit C LTQ03_05695 PF02313 Fumarate reductase subunit D LTQ03_05700 PF01132 Elongation factor P (EF-P) OB domain LTQ03_05700 PF08207 Elongation factor P (EF-P) KOW-like domain LTQ03_05700 PF09285 Elongation factor P, C-terminal LTQ03_05705 PF04055 Radical SAM superfamily LTQ03_05710 PF02308 MgtC family LTQ03_05715 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_05725 PF00118 TCP-1/cpn60 chaperonin family LTQ03_05730 PF00166 Chaperonin 10 Kd subunit LTQ03_05735 PF01554 MatE LTQ03_05740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LTQ03_05740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ03_05755 PF00953 Glycosyl transferase family 4 LTQ03_05785 PF00117 Glutamine amidotransferase class-I LTQ03_05795 PF01467 Cytidylyltransferase-like LTQ03_05795 PF00294 pfkB family carbohydrate kinase LTQ03_05800 PF00733 Asparagine synthase LTQ03_05800 PF13537 Glutamine amidotransferase domain LTQ03_05805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LTQ03_05810 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_05810 PF12804 MobA-like NTP transferase domain LTQ03_05815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LTQ03_05815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ03_05825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LTQ03_05830 PF04321 RmlD substrate binding domain LTQ03_05835 PF00483 Nucleotidyl transferase LTQ03_05840 PF16363 GDP-mannose 4,6 dehydratase LTQ03_05845 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LTQ03_05845 PF01676 Metalloenzyme superfamily LTQ03_05850 PF02719 Polysaccharide biosynthesis protein LTQ03_05855 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LTQ03_05865 PF02397 Bacterial sugar transferase LTQ03_05870 PF13477 Glycosyl transferase 4-like LTQ03_05870 PF00534 Glycosyl transferases group 1 LTQ03_05890 PF00534 Glycosyl transferases group 1 LTQ03_05895 PF13439 Glycosyltransferase Family 4 LTQ03_05895 PF00534 Glycosyl transferases group 1 LTQ03_05915 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LTQ03_05920 PF04321 RmlD substrate binding domain LTQ03_05925 PF00483 Nucleotidyl transferase LTQ03_05930 PF16363 GDP-mannose 4,6 dehydratase LTQ03_05935 PF01370 NAD dependent epimerase/dehydratase family LTQ03_05940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LTQ03_05940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LTQ03_05940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LTQ03_05960 PF13614 AAA domain LTQ03_05960 PF13807 G-rich domain on putative tyrosine kinase LTQ03_05960 PF02706 Chain length determinant protein LTQ03_05965 PF01451 Low molecular weight phosphotyrosine protein phosphatase LTQ03_05970 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LTQ03_05970 PF02563 Polysaccharide biosynthesis/export protein LTQ03_05970 PF10531 SLBB domain LTQ03_05975 PF06082 Exopolysaccharide biosynthesis protein YbjH LTQ03_05995 PF00581 Rhodanese-like domain LTQ03_06000 PF02556 Preprotein translocase subunit SecB LTQ03_06005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LTQ03_06005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LTQ03_06010 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_06010 PF06426 Serine acetyltransferase, N-terminal LTQ03_06015 PF01551 Peptidase family M23 LTQ03_06020 PF08360 QacR-like protein, C-terminal region LTQ03_06020 PF00440 Bacterial regulatory proteins, tetR family LTQ03_06025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LTQ03_06025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LTQ03_06025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LTQ03_06030 PF01370 NAD dependent epimerase/dehydratase family LTQ03_06035 PF03279 Bacterial lipid A biosynthesis acyltransferase LTQ03_06040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LTQ03_06050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LTQ03_06050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LTQ03_06050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LTQ03_06055 PF01370 NAD dependent epimerase/dehydratase family LTQ03_06070 PF00534 Glycosyl transferases group 1 LTQ03_06070 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LTQ03_06075 PF13439 Glycosyltransferase Family 4 LTQ03_06075 PF00534 Glycosyl transferases group 1 LTQ03_06090 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LTQ03_06095 PF05686 Glycosyl transferase family 90 LTQ03_06100 PF01467 Cytidylyltransferase-like LTQ03_06115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LTQ03_06115 PF06827 Zinc finger found in FPG and IleRS LTQ03_06115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LTQ03_06125 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_06125 PF01610 Transposase LTQ03_06125 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_06130 PF00471 Ribosomal protein L33 LTQ03_06135 PF00830 Ribosomal L28 family LTQ03_06140 PF04002 RadC-like JAB domain LTQ03_06145 PF04127 DNA / pantothenate metabolism flavoprotein LTQ03_06145 PF02441 Flavoprotein LTQ03_06150 PF00440 Bacterial regulatory proteins, tetR family LTQ03_06155 PF03279 Bacterial lipid A biosynthesis acyltransferase LTQ03_06160 PF00156 Phosphoribosyl transferase domain LTQ03_06165 PF01138 3' exoribonuclease family, domain 1 LTQ03_06165 PF03725 3' exoribonuclease family, domain 2 LTQ03_06170 PF08340 Domain of unknown function (DUF1732) LTQ03_06170 PF03755 YicC-like family, N-terminal region LTQ03_06175 PF00313 'Cold-shock' DNA-binding domain LTQ03_06190 PF00860 Permease family LTQ03_06195 PF00625 Guanylate kinase LTQ03_06200 PF01192 RNA polymerase Rpb6 LTQ03_06205 PF02824 TGS domain LTQ03_06205 PF04607 Region found in RelA / SpoT proteins LTQ03_06205 PF13291 ACT domain LTQ03_06210 PF17191 RecG wedge domain LTQ03_06210 PF00271 Helicase conserved C-terminal domain LTQ03_06210 PF00270 DEAD/DEAH box helicase LTQ03_06215 PF00672 HAMP domain LTQ03_06215 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_06220 PF00486 Transcriptional regulatory protein, C terminal LTQ03_06220 PF00072 Response regulator receiver domain LTQ03_06225 PF03449 Transcription elongation factor, N-terminal LTQ03_06225 PF01272 Transcription elongation factor, GreA/GreB, C-term LTQ03_06230 PF17674 HHH domain LTQ03_06230 PF09371 Tex-like protein N-terminal domain LTQ03_06230 PF16921 Tex protein YqgF-like domain LTQ03_06230 PF00575 S1 RNA binding domain LTQ03_06235 PF01610 Transposase LTQ03_06235 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_06235 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_06245 PF00561 alpha/beta hydrolase fold LTQ03_06250 PF00156 Phosphoribosyl transferase domain LTQ03_06255 PF01106 NifU-like domain LTQ03_06255 PF01521 Iron-sulphur cluster biosynthesis LTQ03_06260 PF00293 NUDIX domain LTQ03_06265 PF00459 Inositol monophosphatase family LTQ03_06270 PF01203 Type II secretion system (T2SS), protein N LTQ03_06275 PF04612 Type II secretion system (T2SS), protein M LTQ03_06280 PF05134 Type II secretion system (T2SS), protein L LTQ03_06280 PF12693 GspL periplasmic domain LTQ03_06285 PF03934 Type II secretion system (T2SS), protein K LTQ03_06290 PF11612 Type II secretion system (T2SS), protein J LTQ03_06290 PF07963 Prokaryotic N-terminal methylation motif LTQ03_06295 PF07963 Prokaryotic N-terminal methylation motif LTQ03_06295 PF02501 Type II secretion system (T2SS), protein I LTQ03_06300 PF12019 Type II transport protein GspH LTQ03_06305 PF08334 Type II secretion system (T2SS), protein G LTQ03_06305 PF07963 Prokaryotic N-terminal methylation motif LTQ03_06310 PF00482 Type II secretion system (T2SS), protein F LTQ03_06315 PF00437 Type II/IV secretion system protein LTQ03_06320 PF00263 Bacterial type II and III secretion system protein LTQ03_06320 PF03958 Bacterial type II/III secretion system short domain LTQ03_06325 PF11356 Type II secretion system protein C LTQ03_06330 PF01479 S4 domain LTQ03_06335 PF01430 Hsp33 protein LTQ03_06340 PF01293 Phosphoenolpyruvate carboxykinase LTQ03_06350 PF00583 Acetyltransferase (GNAT) family LTQ03_06350 PF09500 Putative thioesterase (yiiD_Cterm) LTQ03_06355 PF02580 D-Tyr-tRNA(Tyr) deacylase LTQ03_06360 PF03631 Virulence factor BrkB LTQ03_06375 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_06375 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_06375 PF01610 Transposase LTQ03_06380 PF00679 Elongation factor G C-terminus LTQ03_06380 PF00009 Elongation factor Tu GTP binding domain LTQ03_06380 PF03144 Elongation factor Tu domain 2 LTQ03_06385 PF03951 Glutamine synthetase, beta-Grasp domain LTQ03_06385 PF00120 Glutamine synthetase, catalytic domain LTQ03_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_06395 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_06395 PF00989 PAS fold LTQ03_06400 PF02954 Bacterial regulatory protein, Fis family LTQ03_06400 PF00072 Response regulator receiver domain LTQ03_06400 PF00158 Sigma-54 interaction domain LTQ03_06405 PF00563 EAL domain LTQ03_06405 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_06405 PF03707 Bacterial signalling protein N terminal repeat LTQ03_06410 PF04055 Radical SAM superfamily LTQ03_06410 PF06969 HemN C-terminal domain LTQ03_06415 PF10675 Protein of unknown function (DUF2489) LTQ03_06420 PF04220 Der GTPase activator (YihI) LTQ03_06430 PF00034 Cytochrome c LTQ03_06435 PF01926 50S ribosome-binding GTPase LTQ03_06445 PF01367 5'-3' exonuclease, C-terminal SAM fold LTQ03_06445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LTQ03_06445 PF00476 DNA polymerase family A LTQ03_06445 PF01612 3'-5' exonuclease LTQ03_06455 PF00490 Delta-aminolevulinic acid dehydratase LTQ03_06460 PF01026 TatD related DNase LTQ03_06465 PF00902 Sec-independent protein translocase protein (TatC) LTQ03_06470 PF02416 mttA/Hcf106 family LTQ03_06475 PF02416 mttA/Hcf106 family LTQ03_06480 PF03109 ABC1 family LTQ03_06485 PF02036 SCP-2 sterol transfer family LTQ03_06490 PF01209 ubiE/COQ5 methyltransferase family LTQ03_06495 PF02646 RmuC family LTQ03_06510 PF10625 Universal stress protein B (UspB) LTQ03_06515 PF00210 Ferritin-like domain LTQ03_06520 PF00582 Universal stress protein family LTQ03_06525 PF00892 EamA-like transporter family LTQ03_06535 PF04445 Putative SAM-dependent methyltransferase LTQ03_06540 PF08448 PAS fold LTQ03_06540 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_06540 PF00563 EAL domain LTQ03_06545 PF01037 Lrp/AsnC ligand binding domain LTQ03_06550 PF01432 Peptidase family M3 LTQ03_06555 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LTQ03_06560 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_06560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ03_06565 PF00069 Protein kinase domain LTQ03_06580 PF03116 NQR2, RnfD, RnfE family LTQ03_06585 PF03793 PASTA domain LTQ03_06585 PF00069 Protein kinase domain LTQ03_06620 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_06620 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ03_06625 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_06630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_06635 PF00005 ABC transporter LTQ03_06635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_06665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ03_06670 PF13361 UvrD-like helicase C-terminal domain LTQ03_06670 PF00580 UvrD/REP helicase N-terminal domain LTQ03_06675 PF00440 Bacterial regulatory proteins, tetR family LTQ03_06680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_06685 PF00873 AcrB/AcrD/AcrF family LTQ03_06690 PF04380 Membrane fusogenic activity LTQ03_06695 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LTQ03_06695 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LTQ03_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_06700 PF03466 LysR substrate binding domain LTQ03_06750 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_06755 PF07369 Protein of unknown function (DUF1488) LTQ03_06760 PF01488 Shikimate / quinate 5-dehydrogenase LTQ03_06760 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LTQ03_06760 PF08501 Shikimate dehydrogenase substrate binding domain LTQ03_06765 PF01218 Coproporphyrinogen III oxidase LTQ03_06770 PF01300 Telomere recombination LTQ03_06775 PF00731 AIR carboxylase LTQ03_06780 PF02222 ATP-grasp domain LTQ03_06780 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LTQ03_06785 PF01396 Topoisomerase DNA binding C4 zinc finger LTQ03_06790 PF04361 Protein of unknown function (DUF494) LTQ03_06795 PF17782 DprA winged helix domain LTQ03_06795 PF02481 DNA recombination-mediator protein A LTQ03_06805 PF01327 Polypeptide deformylase LTQ03_06810 PF00551 Formyl transferase LTQ03_06810 PF02911 Formyl transferase, C-terminal domain LTQ03_06815 PF01029 NusB family LTQ03_06815 PF01189 16S rRNA methyltransferase RsmB/F LTQ03_06820 PF02080 TrkA-C domain LTQ03_06820 PF02254 TrkA-N domain LTQ03_06825 PF02386 Cation transport protein LTQ03_06835 PF03006 Haemolysin-III related LTQ03_06840 PF07070 SpoOM protein LTQ03_06850 PF06288 Protein of unknown function (DUF1040) LTQ03_06855 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LTQ03_06855 PF13746 4Fe-4S dicluster domain LTQ03_06855 PF12801 4Fe-4S binding domain LTQ03_06860 PF01636 Phosphotransferase enzyme family LTQ03_06865 PF01323 DSBA-like thioredoxin domain LTQ03_06875 PF13335 Magnesium chelatase, subunit ChlI C-terminal LTQ03_06875 PF01078 Magnesium chelatase, subunit ChlI LTQ03_06880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_06880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_06880 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ03_06890 PF01063 Amino-transferase class IV LTQ03_06895 PF00920 Dehydratase family LTQ03_06900 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_06900 PF00585 C-terminal regulatory domain of Threonine dehydratase LTQ03_06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_06905 PF03466 LysR substrate binding domain LTQ03_06910 PF07690 Major Facilitator Superfamily LTQ03_06915 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_06915 PF12804 MobA-like NTP transferase domain LTQ03_06920 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LTQ03_06920 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LTQ03_06925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_06925 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ03_06930 PF00231 ATP synthase LTQ03_06935 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ03_06935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_06935 PF00306 ATP synthase alpha/beta chain, C terminal domain LTQ03_06940 PF00213 ATP synthase delta (OSCP) subunit LTQ03_06945 PF00430 ATP synthase B/B' CF(0) LTQ03_06950 PF00137 ATP synthase subunit C LTQ03_06955 PF00119 ATP synthase A chain LTQ03_06960 PF03899 ATP synthase I chain LTQ03_06965 PF02195 ParB-like nuclease domain LTQ03_06965 PF17762 HTH domain found in ParB protein LTQ03_06970 PF13614 AAA domain LTQ03_06975 PF02527 rRNA small subunit methyltransferase G LTQ03_06980 PF13932 GidA associated domain LTQ03_06980 PF01134 Glucose inhibited division protein A LTQ03_06985 PF00258 Flavodoxin LTQ03_06990 PF01926 50S ribosome-binding GTPase LTQ03_06990 PF12631 MnmE helical domain LTQ03_06990 PF10396 GTP-binding protein TrmE N-terminus LTQ03_06995 PF14849 YidC periplasmic domain LTQ03_06995 PF02096 60Kd inner membrane protein LTQ03_07000 PF01809 Putative membrane protein insertion efficiency factor LTQ03_07005 PF00825 Ribonuclease P LTQ03_07010 PF00468 Ribosomal protein L34 LTQ03_07015 PF00005 ABC transporter LTQ03_07020 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_07025 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_07030 PF08299 Bacterial dnaA protein helix-turn-helix LTQ03_07030 PF00308 Bacterial dnaA protein LTQ03_07030 PF11638 DnaA N-terminal domain LTQ03_07035 PF00712 DNA polymerase III beta subunit, N-terminal domain LTQ03_07035 PF02767 DNA polymerase III beta subunit, central domain LTQ03_07035 PF02768 DNA polymerase III beta subunit, C-terminal domain LTQ03_07040 PF02463 RecF/RecN/SMC N terminal domain LTQ03_07045 PF00986 DNA gyrase B subunit, carboxyl terminus LTQ03_07045 PF00204 DNA gyrase B LTQ03_07045 PF01751 Toprim domain LTQ03_07045 PF18053 DNA gyrase B subunit insert domain LTQ03_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_07050 PF00011 Hsp20/alpha crystallin family LTQ03_07055 PF00155 Aminotransferase class I and II LTQ03_07060 PF00128 Alpha amylase, catalytic domain LTQ03_07065 PF05746 DALR anticodon binding domain LTQ03_07065 PF02092 Glycyl-tRNA synthetase beta subunit LTQ03_07070 PF02091 Glycyl-tRNA synthetase alpha subunit LTQ03_07075 PF01169 Uncharacterized protein family UPF0016 LTQ03_07085 PF01206 Sulfurtransferase TusA LTQ03_07095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_07095 PF03466 LysR substrate binding domain LTQ03_07100 PF00107 Zinc-binding dehydrogenase LTQ03_07100 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_07105 PF02803 Thiolase, C-terminal domain LTQ03_07105 PF00108 Thiolase, N-terminal domain LTQ03_07110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LTQ03_07110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LTQ03_07110 PF00378 Enoyl-CoA hydratase/isomerase LTQ03_07115 PF09186 Domain of unknown function (DUF1949) LTQ03_07115 PF01205 Uncharacterized protein family UPF0029 LTQ03_07120 PF02386 Cation transport protein LTQ03_07125 PF12724 Flavodoxin domain LTQ03_07170 PF13358 DDE superfamily endonuclease LTQ03_07175 PF07732 Multicopper oxidase LTQ03_07175 PF07731 Multicopper oxidase LTQ03_07175 PF00394 Multicopper oxidase LTQ03_07180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LTQ03_07185 PF13667 ThiC-associated domain LTQ03_07185 PF01964 Radical SAM ThiC family LTQ03_07190 PF02581 Thiamine monophosphate synthase LTQ03_07195 PF00899 ThiF family LTQ03_07205 PF05690 Thiazole biosynthesis protein ThiG LTQ03_07210 PF06968 Biotin and Thiamin Synthesis associated domain LTQ03_07210 PF04055 Radical SAM superfamily LTQ03_07215 PF01321 Creatinase/Prolidase N-terminal domain LTQ03_07215 PF00557 Metallopeptidase family M24 LTQ03_07215 PF01321 Creatinase/Prolidase N-terminal domain LTQ03_07215 PF00557 Metallopeptidase family M24 LTQ03_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_07220 PF03466 LysR substrate binding domain LTQ03_07225 PF07690 Major Facilitator Superfamily LTQ03_07245 PF05114 Protein of unknown function (DUF692) LTQ03_07255 PF00580 UvrD/REP helicase N-terminal domain LTQ03_07255 PF13361 UvrD-like helicase C-terminal domain LTQ03_07260 PF08534 Redoxin LTQ03_07270 PF01810 LysE type translocator LTQ03_07275 PF02311 AraC-like ligand binding domain LTQ03_07275 PF12833 Helix-turn-helix domain LTQ03_07280 PF00892 EamA-like transporter family LTQ03_07285 PF00270 DEAD/DEAH box helicase LTQ03_07285 PF00271 Helicase conserved C-terminal domain LTQ03_07285 PF00570 HRDC domain LTQ03_07285 PF16124 RecQ zinc-binding LTQ03_07285 PF09382 RQC domain LTQ03_07295 PF02592 Putative vitamin uptake transporter LTQ03_07300 PF02541 Ppx/GppA phosphatase family LTQ03_07305 PF00271 Helicase conserved C-terminal domain LTQ03_07305 PF00270 DEAD/DEAH box helicase LTQ03_07310 PF00085 Thioredoxin LTQ03_07315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_07315 PF07498 Rho termination factor, N-terminal domain LTQ03_07315 PF07497 Rho termination factor, RNA-binding domain LTQ03_07325 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LTQ03_07330 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_07330 PF00175 Oxidoreductase NAD-binding domain LTQ03_07335 PF00175 Oxidoreductase NAD-binding domain LTQ03_07385 PF07219 HemY protein N-terminus LTQ03_07390 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LTQ03_07395 PF02602 Uroporphyrinogen-III synthase HemD LTQ03_07400 PF03900 Porphobilinogen deaminase, C-terminal domain LTQ03_07400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LTQ03_07405 PF12633 Adenylate cyclase NT domain LTQ03_07405 PF01295 Adenylate cyclase, class-I LTQ03_07410 PF01491 Frataxin-like domain LTQ03_07420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LTQ03_07420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LTQ03_07425 PF01678 Diaminopimelate epimerase LTQ03_07435 PF00589 Phage integrase family LTQ03_07435 PF02899 Phage integrase, N-terminal SAM-like domain LTQ03_07440 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_07445 PF00563 EAL domain LTQ03_07445 PF08495 FIST N domain LTQ03_07445 PF10442 FIST C domain LTQ03_07445 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_07450 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_07450 PF10442 FIST C domain LTQ03_07450 PF08495 FIST N domain LTQ03_07450 PF00563 EAL domain LTQ03_07455 PF03942 DTW domain LTQ03_07475 PF12146 Serine aminopeptidase, S33 LTQ03_07480 PF01810 LysE type translocator LTQ03_07485 PF08668 HDOD domain LTQ03_07485 PF00563 EAL domain LTQ03_07490 PF01022 Bacterial regulatory protein, arsR family LTQ03_07495 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ03_07495 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ03_07535 PF01914 MarC family integral membrane protein LTQ03_07550 PF00448 SRP54-type protein, GTPase domain LTQ03_07550 PF02881 SRP54-type protein, helical bundle domain LTQ03_07550 PF00448 SRP54-type protein, GTPase domain LTQ03_07550 PF02881 SRP54-type protein, helical bundle domain LTQ03_07555 PF00005 ABC transporter LTQ03_07560 PF18075 FtsX extracellular domain LTQ03_07565 PF00140 Sigma-70 factor, region 1.2 LTQ03_07565 PF04542 Sigma-70 region 2 LTQ03_07565 PF04545 Sigma-70, region 4 LTQ03_07570 PF00581 Rhodanese-like domain LTQ03_07575 PF01694 Rhomboid family LTQ03_07575 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LTQ03_07580 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_07580 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_07580 PF01610 Transposase LTQ03_07585 PF03748 Flagellar basal body-associated protein FliL LTQ03_07590 PF04345 Chorismate lyase LTQ03_07595 PF01040 UbiA prenyltransferase family LTQ03_07600 PF01553 Acyltransferase LTQ03_07605 PF01219 Prokaryotic diacylglycerol kinase LTQ03_07610 PF01726 LexA DNA binding domain LTQ03_07610 PF00717 Peptidase S24-like LTQ03_07615 PF04072 Leucine carboxyl methyltransferase LTQ03_07620 PF01554 MatE LTQ03_07625 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_07625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ03_07635 PF00440 Bacterial regulatory proteins, tetR family LTQ03_07645 PF05958 tRNA (Uracil-5-)-methyltransferase LTQ03_07650 PF00593 TonB dependent receptor LTQ03_07650 PF07715 TonB-dependent Receptor Plug Domain LTQ03_07660 PF01177 Asp/Glu/Hydantoin racemase LTQ03_07765 PF13091 PLD-like domain LTQ03_07775 PF01565 FAD binding domain LTQ03_07775 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LTQ03_07780 PF02237 Biotin protein ligase C terminal domain LTQ03_07780 PF03099 Biotin/lipoate A/B protein ligase family LTQ03_07780 PF08279 HTH domain LTQ03_07785 PF00485 Phosphoribulokinase / Uridine kinase family LTQ03_07810 PF00009 Elongation factor Tu GTP binding domain LTQ03_07810 PF03144 Elongation factor Tu domain 2 LTQ03_07810 PF03143 Elongation factor Tu C-terminal domain LTQ03_07815 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LTQ03_07820 PF00467 KOW motif LTQ03_07820 PF02357 Transcription termination factor nusG LTQ03_07825 PF00298 Ribosomal protein L11, RNA binding domain LTQ03_07825 PF03946 Ribosomal protein L11, N-terminal domain LTQ03_07830 PF00687 Ribosomal protein L1p/L10e family LTQ03_07835 PF00466 Ribosomal protein L10 LTQ03_07840 PF00542 Ribosomal protein L7/L12 C-terminal domain LTQ03_07840 PF16320 Ribosomal protein L7/L12 dimerisation domain LTQ03_07845 PF04560 RNA polymerase Rpb2, domain 7 LTQ03_07845 PF00562 RNA polymerase Rpb2, domain 6 LTQ03_07845 PF04565 RNA polymerase Rpb2, domain 3 LTQ03_07845 PF04561 RNA polymerase Rpb2, domain 2 LTQ03_07845 PF10385 RNA polymerase beta subunit external 1 domain LTQ03_07845 PF04563 RNA polymerase beta subunit LTQ03_07850 PF04997 RNA polymerase Rpb1, domain 1 LTQ03_07850 PF00623 RNA polymerase Rpb1, domain 2 LTQ03_07850 PF04983 RNA polymerase Rpb1, domain 3 LTQ03_07850 PF05000 RNA polymerase Rpb1, domain 4 LTQ03_07850 PF04998 RNA polymerase Rpb1, domain 5 LTQ03_07855 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LTQ03_07860 PF09297 NADH pyrophosphatase zinc ribbon domain LTQ03_07860 PF00293 NUDIX domain LTQ03_07865 PF01208 Uroporphyrinogen decarboxylase (URO-D) LTQ03_07870 PF03167 Uracil DNA glycosylase superfamily LTQ03_07880 PF04222 Protein of unknown function (DUF416) LTQ03_07885 PF01609 Transposase DDE domain LTQ03_07885 PF02281 Transposase Tn5 dimerisation domain LTQ03_07885 PF14706 Transposase DNA-binding LTQ03_07890 PF01595 Cyclin M transmembrane N-terminal domain LTQ03_07890 PF00571 CBS domain LTQ03_07895 PF00216 Bacterial DNA-binding protein LTQ03_07910 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LTQ03_07910 PF02843 Phosphoribosylglycinamide synthetase, C domain LTQ03_07910 PF02844 Phosphoribosylglycinamide synthetase, N domain LTQ03_07915 PF02142 MGS-like domain LTQ03_07915 PF01808 AICARFT/IMPCHase bienzyme LTQ03_07920 PF13411 MerR HTH family regulatory protein LTQ03_07925 PF02954 Bacterial regulatory protein, Fis family LTQ03_07930 PF01207 Dihydrouridine synthase (Dus) LTQ03_07940 PF02785 Biotin carboxylase C-terminal domain LTQ03_07940 PF00289 Biotin carboxylase, N-terminal domain LTQ03_07940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LTQ03_07945 PF00364 Biotin-requiring enzyme LTQ03_07950 PF01220 Dehydroquinase class II LTQ03_07955 PF16177 Acetyl-coenzyme A synthetase N-terminus LTQ03_07955 PF00501 AMP-binding enzyme LTQ03_07955 PF13193 AMP-binding enzyme C-terminal domain LTQ03_07970 PF12832 MFS_1 like family LTQ03_07975 PF00672 HAMP domain LTQ03_07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_07975 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_07975 PF01627 Hpt domain LTQ03_07975 PF00072 Response regulator receiver domain LTQ03_07980 PF10415 Fumarase C C-terminus LTQ03_07980 PF00206 Lyase LTQ03_07990 PF00474 Sodium:solute symporter family LTQ03_08000 PF02080 TrkA-C domain LTQ03_08000 PF00999 Sodium/hydrogen exchanger family LTQ03_08000 PF03471 Transporter associated domain LTQ03_08005 PF00196 Bacterial regulatory proteins, luxR family LTQ03_08005 PF00072 Response regulator receiver domain LTQ03_08010 PF11412 Disulphide bond corrector protein DsbC LTQ03_08010 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ03_08015 PF01316 Arginine repressor, DNA binding domain LTQ03_08015 PF02863 Arginine repressor, C-terminal domain LTQ03_08020 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LTQ03_08020 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LTQ03_08025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ03_08025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ03_08030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ03_08030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ03_08035 PF00696 Amino acid kinase family LTQ03_08045 PF03606 C4-dicarboxylate anaerobic carrier LTQ03_08050 PF03605 Anaerobic c4-dicarboxylate membrane transporter LTQ03_08055 PF00206 Lyase LTQ03_08055 PF10415 Fumarase C C-terminus LTQ03_08060 PF04186 FxsA cytoplasmic membrane protein LTQ03_08065 PF00588 SpoU rRNA Methylase family LTQ03_08070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LTQ03_08070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LTQ03_08075 PF00672 HAMP domain LTQ03_08075 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_08075 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ03_08080 PF00486 Transcriptional regulatory protein, C terminal LTQ03_08080 PF00072 Response regulator receiver domain LTQ03_08090 PF16916 Dimerisation domain of Zinc Transporter LTQ03_08090 PF01545 Cation efflux family LTQ03_08095 PF00365 Phosphofructokinase LTQ03_08100 PF00121 Triosephosphate isomerase LTQ03_08110 PF05656 Protein of unknown function (DUF805) LTQ03_08125 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LTQ03_08130 PF06005 Cell division protein ZapB LTQ03_08135 PF03737 Aldolase/RraA LTQ03_08140 PF01040 UbiA prenyltransferase family LTQ03_08145 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_08145 PF07724 AAA domain (Cdc48 subfamily) LTQ03_08150 PF00227 Proteasome subunit LTQ03_08160 PF00356 Bacterial regulatory proteins, lacI family LTQ03_08165 PF00271 Helicase conserved C-terminal domain LTQ03_08165 PF18074 Primosomal protein N C-terminal domain LTQ03_08165 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LTQ03_08165 PF17764 3′ DNA-binding domain (3′BD) LTQ03_08165 PF00270 DEAD/DEAH box helicase LTQ03_08170 PF01197 Ribosomal protein L31 LTQ03_08175 PF03949 Malic enzyme, NAD binding domain LTQ03_08175 PF00390 Malic enzyme, N-terminal domain LTQ03_08180 PF01340 Met Apo-repressor, MetJ LTQ03_08185 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ03_08190 PF03447 Homoserine dehydrogenase, NAD binding domain LTQ03_08190 PF00742 Homoserine dehydrogenase LTQ03_08190 PF00696 Amino acid kinase family LTQ03_08195 PF02219 Methylenetetrahydrofolate reductase LTQ03_08205 PF00311 Phosphoenolpyruvate carboxylase LTQ03_08210 PF07687 Peptidase dimerisation domain LTQ03_08210 PF01546 Peptidase family M20/M25/M40 LTQ03_08215 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ03_08215 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ03_08220 PF00696 Amino acid kinase family LTQ03_08225 PF00764 Arginosuccinate synthase LTQ03_08230 PF14698 Argininosuccinate lyase C-terminal LTQ03_08230 PF00583 Acetyltransferase (GNAT) family LTQ03_08230 PF00206 Lyase LTQ03_08240 PF01042 Endoribonuclease L-PSP LTQ03_08245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ03_08245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_08250 PF00462 Glutaredoxin LTQ03_08250 PF08534 Redoxin LTQ03_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_08260 PF03466 LysR substrate binding domain LTQ03_08265 PF17092 Penicillin-binding protein OB-like domain LTQ03_08265 PF00912 Transglycosylase LTQ03_08265 PF00905 Penicillin binding protein transpeptidase domain LTQ03_08290 PF00263 Bacterial type II and III secretion system protein LTQ03_08290 PF03958 Bacterial type II/III secretion system short domain LTQ03_08290 PF07660 Secretin and TonB N terminus short domain LTQ03_08290 PF11741 AMIN domain LTQ03_08295 PF01202 Shikimate kinase LTQ03_08300 PF01761 3-dehydroquinate synthase LTQ03_08310 PF02086 D12 class N6 adenine-specific DNA methyltransferase LTQ03_08315 PF00834 Ribulose-phosphate 3 epimerase family LTQ03_08320 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_08325 PF00579 tRNA synthetases class I (W and Y) LTQ03_08335 PF00117 Glutamine amidotransferase class-I LTQ03_08340 PF00202 Aminotransferase class-III LTQ03_08345 PF04958 Arginine N-succinyltransferase beta subunit LTQ03_08350 PF00171 Aldehyde dehydrogenase family LTQ03_08360 PF00027 Cyclic nucleotide-binding domain LTQ03_08360 PF13545 Crp-like helix-turn-helix domain LTQ03_08365 PF00485 Phosphoribulokinase / Uridine kinase family LTQ03_08370 PF06794 Uncharacterised protein family (UPF0270) LTQ03_08375 PF00561 alpha/beta hydrolase fold LTQ03_08385 PF12848 ABC transporter LTQ03_08385 PF00005 ABC transporter LTQ03_08390 PF02525 Flavodoxin-like fold LTQ03_08395 PF00999 Sodium/hydrogen exchanger family LTQ03_08395 PF02254 TrkA-N domain LTQ03_08405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_08410 PF01112 Asparaginase LTQ03_08415 PF04102 SlyX LTQ03_08425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ03_08425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_08430 PF13309 HTH domain LTQ03_08430 PF08348 YheO-like PAS domain LTQ03_08435 PF02635 DsrE/DsrF-like family LTQ03_08440 PF02635 DsrE/DsrF-like family LTQ03_08450 PF00164 Ribosomal protein S12/S23 LTQ03_08455 PF00177 Ribosomal protein S7p/S5e LTQ03_08460 PF03144 Elongation factor Tu domain 2 LTQ03_08460 PF00009 Elongation factor Tu GTP binding domain LTQ03_08460 PF03764 Elongation factor G, domain IV LTQ03_08460 PF14492 Elongation Factor G, domain II LTQ03_08460 PF00679 Elongation factor G C-terminus LTQ03_08465 PF03143 Elongation factor Tu C-terminal domain LTQ03_08465 PF03144 Elongation factor Tu domain 2 LTQ03_08465 PF00009 Elongation factor Tu GTP binding domain LTQ03_08470 PF00338 Ribosomal protein S10p/S20e LTQ03_08475 PF00297 Ribosomal protein L3 LTQ03_08480 PF00573 Ribosomal protein L4/L1 family LTQ03_08485 PF00276 Ribosomal protein L23 LTQ03_08490 PF00181 Ribosomal Proteins L2, RNA binding domain LTQ03_08490 PF03947 Ribosomal Proteins L2, C-terminal domain LTQ03_08495 PF00203 Ribosomal protein S19 LTQ03_08500 PF00237 Ribosomal protein L22p/L17e LTQ03_08505 PF00189 Ribosomal protein S3, C-terminal domain LTQ03_08505 PF07650 KH domain LTQ03_08510 PF00252 Ribosomal protein L16p/L10e LTQ03_08515 PF00831 Ribosomal L29 protein LTQ03_08520 PF00366 Ribosomal protein S17 LTQ03_08525 PF00238 Ribosomal protein L14p/L23e LTQ03_08530 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LTQ03_08530 PF00467 KOW motif LTQ03_08535 PF00673 ribosomal L5P family C-terminus LTQ03_08535 PF00281 Ribosomal protein L5 LTQ03_08540 PF00253 Ribosomal protein S14p/S29e LTQ03_08545 PF00410 Ribosomal protein S8 LTQ03_08550 PF00347 Ribosomal protein L6 LTQ03_08555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LTQ03_08560 PF00333 Ribosomal protein S5, N-terminal domain LTQ03_08560 PF03719 Ribosomal protein S5, C-terminal domain LTQ03_08565 PF00327 Ribosomal protein L30p/L7e LTQ03_08570 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LTQ03_08575 PF00344 SecY translocase LTQ03_08580 PF00444 Ribosomal protein L36 LTQ03_08585 PF00416 Ribosomal protein S13/S18 LTQ03_08590 PF00411 Ribosomal protein S11 LTQ03_08595 PF01479 S4 domain LTQ03_08595 PF00163 Ribosomal protein S4/S9 N-terminal domain LTQ03_08600 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LTQ03_08600 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LTQ03_08600 PF01000 RNA polymerase Rpb3/RpoA insert domain LTQ03_08605 PF01196 Ribosomal protein L17 LTQ03_08615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_08615 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ03_08620 PF04225 Opacity-associated protein A LysM-like domain LTQ03_08620 PF08525 Opacity-associated protein A N-terminal motif LTQ03_08630 PF13673 Acetyltransferase (GNAT) domain LTQ03_08675 PF02872 5'-nucleotidase, C-terminal domain LTQ03_08675 PF00149 Calcineurin-like phosphoesterase LTQ03_08680 PF01507 Phosphoadenosine phosphosulfate reductase family LTQ03_08685 PF00009 Elongation factor Tu GTP binding domain LTQ03_08690 PF02080 TrkA-C domain LTQ03_08690 PF03600 Citrate transporter LTQ03_08715 PF00005 ABC transporter LTQ03_08725 PF10795 Protein of unknown function (DUF2607) LTQ03_08730 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LTQ03_08735 PF06526 Protein of unknown function (DUF1107) LTQ03_08740 PF01625 Peptide methionine sulfoxide reductase LTQ03_08745 PF17243 POTRA domain TamA domain 1 LTQ03_08745 PF07244 Surface antigen variable number repeat LTQ03_08745 PF01103 Surface antigen LTQ03_08750 PF04357 TamB, inner membrane protein subunit of TAM complex LTQ03_08755 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LTQ03_08760 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LTQ03_08765 PF08245 Mur ligase middle domain LTQ03_08765 PF02875 Mur ligase family, glutamate ligase domain LTQ03_08765 PF01225 Mur ligase family, catalytic domain LTQ03_08770 PF02441 Flavoprotein LTQ03_08780 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_08785 PF00005 ABC transporter LTQ03_08790 PF04751 Protein of unknown function (DUF615) LTQ03_08795 PF01523 Putative modulator of DNA gyrase LTQ03_08800 PF03448 MgtE intracellular N domain LTQ03_08800 PF01769 Divalent cation transporter LTQ03_08800 PF00571 CBS domain LTQ03_08805 PF00381 PTS HPr component phosphorylation site LTQ03_08810 PF03668 P-loop ATPase protein family LTQ03_08815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_08820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LTQ03_08825 PF00309 Sigma-54 factor, Activator interacting domain (AID) LTQ03_08825 PF04963 Sigma-54 factor, core binding domain LTQ03_08825 PF04552 Sigma-54, DNA binding domain LTQ03_08830 PF00005 ABC transporter LTQ03_08830 PF12399 Branched-chain amino acid ATP-binding cassette transporter LTQ03_08835 PF03968 OstA-like protein LTQ03_08850 PF00571 CBS domain LTQ03_08850 PF01380 SIS domain LTQ03_08855 PF01699 Sodium/calcium exchanger protein LTQ03_08860 PF00005 ABC transporter LTQ03_08865 PF02405 Permease MlaE LTQ03_08870 PF02470 MlaD protein LTQ03_08875 PF05494 MlaC protein LTQ03_08885 PF01722 BolA-like protein LTQ03_08890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LTQ03_08895 PF01553 Acyltransferase LTQ03_08900 PF01042 Endoribonuclease L-PSP LTQ03_08905 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LTQ03_08905 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LTQ03_08910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ03_08910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ03_08915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ03_08915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ03_08925 PF06877 Regulator of ribonuclease activity B LTQ03_08935 PF00583 Acetyltransferase (GNAT) family LTQ03_08945 PF10458 Valyl tRNA synthetase tRNA binding arm LTQ03_08945 PF00133 tRNA synthetases class I (I, L, M and V) LTQ03_08945 PF08264 Anticodon-binding domain of tRNA LTQ03_08950 PF04364 DNA polymerase III chi subunit, HolC LTQ03_08955 PF02789 Cytosol aminopeptidase family, N-terminal domain LTQ03_08955 PF00883 Cytosol aminopeptidase family, catalytic domain LTQ03_08960 PF03739 Lipopolysaccharide export system permease LptF/LptG LTQ03_08965 PF03739 Lipopolysaccharide export system permease LptF/LptG LTQ03_08985 PF00072 Response regulator receiver domain LTQ03_09080 PF00672 HAMP domain LTQ03_09080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_09080 PF17200 Single Cache domain 2 LTQ03_09120 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LTQ03_09120 PF01464 Transglycosylase SLT domain LTQ03_09125 PF04362 Bacterial Fe(2+) trafficking LTQ03_09130 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ03_09130 PF00633 Helix-hairpin-helix motif LTQ03_09130 PF14815 NUDIX domain LTQ03_09135 PF02390 Putative methyltransferase LTQ03_09140 PF04960 Glutaminase LTQ03_09145 PF06969 HemN C-terminal domain LTQ03_09145 PF04055 Radical SAM superfamily LTQ03_09150 PF01725 Ham1 family LTQ03_09160 PF02594 Uncharacterised ACR, YggU family COG1872 LTQ03_09165 PF02325 YGGT family LTQ03_09170 PF14748 Pyrroline-5-carboxylate reductase dimerisation LTQ03_09170 PF03807 NADP oxidoreductase coenzyme F420-dependent LTQ03_09175 PF01168 Alanine racemase, N-terminal domain LTQ03_09180 PF00437 Type II/IV secretion system protein LTQ03_09185 PF00437 Type II/IV secretion system protein LTQ03_09195 PF03652 Holliday junction resolvase LTQ03_09200 PF02622 Uncharacterized ACR, COG1678 LTQ03_09205 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LTQ03_09205 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LTQ03_09210 PF04452 RNA methyltransferase LTQ03_09215 PF04231 Endonuclease I LTQ03_09220 PF17283 SprT-like zinc ribbon domain LTQ03_09220 PF10263 SprT-like family LTQ03_09230 PF00438 S-adenosylmethionine synthetase, N-terminal domain LTQ03_09230 PF02772 S-adenosylmethionine synthetase, central domain LTQ03_09230 PF02773 S-adenosylmethionine synthetase, C-terminal domain LTQ03_09235 PF02779 Transketolase, pyrimidine binding domain LTQ03_09235 PF02780 Transketolase, C-terminal domain LTQ03_09235 PF00456 Transketolase, thiamine diphosphate binding domain LTQ03_09240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ03_09240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ03_09245 PF00162 Phosphoglycerate kinase LTQ03_09250 PF01116 Fructose-bisphosphate aldolase class-II LTQ03_09255 PF00924 Mechanosensitive ion channel LTQ03_09255 PF05552 Conserved TM helix LTQ03_09260 PF01810 LysE type translocator LTQ03_09265 PF03466 LysR substrate binding domain LTQ03_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_09275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ03_09275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ03_09275 PF01842 ACT domain LTQ03_09280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LTQ03_09285 PF01812 5-formyltetrahydrofolate cyclo-ligase family LTQ03_09295 PF05164 Cell division protein ZapA LTQ03_09300 PF03695 Uncharacterised protein family (UPF0149) LTQ03_09305 PF01494 FAD binding domain LTQ03_09310 PF01494 FAD binding domain LTQ03_09330 PF03937 Flavinator of succinate dehydrogenase LTQ03_09335 PF00890 FAD binding domain LTQ03_09335 PF02910 Fumarate reductase flavoprotein C-term LTQ03_09340 PF04542 Sigma-70 region 2 LTQ03_09340 PF08281 Sigma-70, region 4 LTQ03_09345 PF03873 Anti sigma-E protein RseA, C-terminal domain LTQ03_09345 PF03872 Anti sigma-E protein RseA, N-terminal domain LTQ03_09350 PF03888 MucB/RseB N-terminal domain LTQ03_09350 PF17188 MucB/RseB C-terminal domain LTQ03_09360 PF00679 Elongation factor G C-terminus LTQ03_09360 PF00009 Elongation factor Tu GTP binding domain LTQ03_09360 PF03144 Elongation factor Tu domain 2 LTQ03_09360 PF06421 GTP-binding protein LepA C-terminus LTQ03_09365 PF10502 Signal peptidase, peptidase S26 LTQ03_09370 PF00035 Double-stranded RNA binding motif LTQ03_09370 PF14622 Ribonuclease-III-like LTQ03_09375 PF01926 50S ribosome-binding GTPase LTQ03_09375 PF07650 KH domain LTQ03_09380 PF11967 Recombination protein O N terminal LTQ03_09380 PF02565 Recombination protein O C terminal LTQ03_09385 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LTQ03_09390 PF01648 4'-phosphopantetheinyl transferase superfamily LTQ03_09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_09395 PF00672 HAMP domain LTQ03_09395 PF01627 Hpt domain LTQ03_09395 PF00072 Response regulator receiver domain LTQ03_09395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ03_09395 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_09400 PF05958 tRNA (Uracil-5-)-methyltransferase LTQ03_09400 PF01938 TRAM domain LTQ03_09405 PF04607 Region found in RelA / SpoT proteins LTQ03_09405 PF13291 ACT domain LTQ03_09405 PF02824 TGS domain LTQ03_09410 PF03819 MazG nucleotide pyrophosphohydrolase domain LTQ03_09415 PF00117 Glutamine amidotransferase class-I LTQ03_09415 PF06418 CTP synthase N-terminus LTQ03_09420 PF00113 Enolase, C-terminal TIM barrel domain LTQ03_09420 PF03952 Enolase, N-terminal domain LTQ03_09430 PF01610 Transposase LTQ03_09430 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_09430 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_09435 PF04977 Septum formation initiator LTQ03_09440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LTQ03_09445 PF02542 YgbB family LTQ03_09450 PF01142 tRNA pseudouridine synthase D (TruD) LTQ03_09455 PF01975 Survival protein SurE LTQ03_09465 PF01551 Peptidase family M23 LTQ03_09465 PF01476 LysM domain LTQ03_09470 PF04539 Sigma-70 region 3 LTQ03_09470 PF00140 Sigma-70 factor, region 1.2 LTQ03_09470 PF04545 Sigma-70, region 4 LTQ03_09470 PF04542 Sigma-70 region 2 LTQ03_09475 PF05192 MutS domain III LTQ03_09475 PF05190 MutS family domain IV LTQ03_09475 PF00488 MutS domain V LTQ03_09475 PF01624 MutS domain I LTQ03_09475 PF05188 MutS domain II LTQ03_09480 PF02464 Competence-damaged protein LTQ03_09485 PF00154 recA bacterial DNA recombination protein LTQ03_09490 PF02272 DHHA1 domain LTQ03_09490 PF01411 tRNA synthetases class II (A) LTQ03_09490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LTQ03_09495 PF00696 Amino acid kinase family LTQ03_09495 PF01842 ACT domain LTQ03_09495 PF13840 ACT domain LTQ03_09500 PF02599 Global regulator protein family LTQ03_09555 PF04277 Oxaloacetate decarboxylase, gamma chain LTQ03_09560 PF00682 HMGL-like LTQ03_09560 PF00364 Biotin-requiring enzyme LTQ03_09560 PF02436 Conserved carboxylase domain LTQ03_09565 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LTQ03_09570 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_09570 PF00107 Zinc-binding dehydrogenase LTQ03_09575 PF09335 SNARE associated Golgi protein LTQ03_09580 PF00675 Insulinase (Peptidase family M16) LTQ03_09580 PF05193 Peptidase M16 inactive domain LTQ03_09585 PF04262 Glutamate-cysteine ligase LTQ03_09595 PF02664 S-Ribosylhomocysteinase (LuxS) LTQ03_09600 PF00571 CBS domain LTQ03_09600 PF03471 Transporter associated domain LTQ03_09600 PF01595 Cyclin M transmembrane N-terminal domain LTQ03_09605 PF01578 Cytochrome C assembly protein LTQ03_09610 PF02978 Signal peptide binding domain LTQ03_09610 PF00448 SRP54-type protein, GTPase domain LTQ03_09610 PF02881 SRP54-type protein, helical bundle domain LTQ03_09615 PF00886 Ribosomal protein S16 LTQ03_09620 PF01782 RimM N-terminal domain LTQ03_09620 PF05239 PRC-barrel domain LTQ03_09625 PF01746 tRNA (Guanine-1)-methyltransferase LTQ03_09630 PF01245 Ribosomal protein L19 LTQ03_09635 PF03884 DNA gyrase inhibitor YacG LTQ03_09640 PF07072 Cell division protein LTQ03_09645 PF01121 Dephospho-CoA kinase LTQ03_09650 PF06750 Bacterial Peptidase A24 N-terminal domain LTQ03_09650 PF01478 Type IV leader peptidase family LTQ03_09655 PF00482 Type II secretion system (T2SS), protein F LTQ03_09660 PF00437 Type II/IV secretion system protein LTQ03_09660 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LTQ03_09665 PF07963 Prokaryotic N-terminal methylation motif LTQ03_09665 PF00114 Pilin (bacterial filament) LTQ03_09670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LTQ03_09670 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LTQ03_09675 PF01510 N-acetylmuramoyl-L-alanine amidase LTQ03_09680 PF00392 Bacterial regulatory proteins, gntR family LTQ03_09680 PF07729 FCD domain LTQ03_09685 PF00456 Transketolase, thiamine diphosphate binding domain LTQ03_09685 PF17831 Pyruvate dehydrogenase E1 component middle domain LTQ03_09690 PF02817 e3 binding domain LTQ03_09690 PF00364 Biotin-requiring enzyme LTQ03_09690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LTQ03_09695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ03_09695 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_09700 PF00440 Bacterial regulatory proteins, tetR family LTQ03_09705 PF00156 Phosphoribosyl transferase domain LTQ03_09710 PF00484 Carbonic anhydrase LTQ03_09715 PF01740 STAS domain LTQ03_09715 PF00916 Sulfate permease family LTQ03_09720 PF00005 ABC transporter LTQ03_09725 PF01061 ABC-2 type transporter LTQ03_09730 PF02569 Pantoate-beta-alanine ligase LTQ03_09735 PF02548 Ketopantoate hydroxymethyltransferase LTQ03_09740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ03_09745 PF12627 Probable RNA and SrmB- binding site of polymerase A LTQ03_09745 PF12626 Polymerase A arginine-rich C-terminus LTQ03_09745 PF01743 Poly A polymerase head domain LTQ03_09750 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ03_09755 PF01258 Prokaryotic dksA/traR C4-type zinc finger LTQ03_09760 PF03749 Sugar fermentation stimulation protein RE domain LTQ03_09760 PF17746 SfsA N-terminal OB domain LTQ03_09765 PF00270 DEAD/DEAH box helicase LTQ03_09765 PF04408 Helicase associated domain (HA2) LTQ03_09765 PF00271 Helicase conserved C-terminal domain LTQ03_09765 PF08482 ATP-dependent helicase C-terminal LTQ03_09770 PF14814 Bifunctional transglycosylase second domain LTQ03_09770 PF00912 Transglycosylase LTQ03_09770 PF00905 Penicillin binding protein transpeptidase domain LTQ03_09775 PF01734 Patatin-like phospholipase LTQ03_09780 PF11791 Aconitate B N-terminal domain LTQ03_09780 PF06434 Aconitate hydratase 2 N-terminus LTQ03_09780 PF00330 Aconitase family (aconitate hydratase) LTQ03_09785 PF06062 Uncharacterised protein family (UPF0231) LTQ03_09790 PF00543 Nitrogen regulatory protein P-II LTQ03_09795 PF00909 Ammonium Transporter Family LTQ03_09800 PF13416 Bacterial extracellular solute-binding protein LTQ03_09810 PF00005 ABC transporter LTQ03_09810 PF08402 TOBE domain LTQ03_09815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ03_09815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ03_09815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ03_09815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ03_09820 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LTQ03_09820 PF06165 Glycosyltransferase family 36 LTQ03_09825 PF00728 Glycosyl hydrolase family 20, catalytic domain LTQ03_09825 PF02838 Glycosyl hydrolase family 20, domain 2 LTQ03_09830 PF01869 BadF/BadG/BcrA/BcrD ATPase family LTQ03_09840 PF00005 ABC transporter LTQ03_09840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_09845 PF00005 ABC transporter LTQ03_09845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_09850 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_09850 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ03_09855 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_09860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_09865 PF00072 Response regulator receiver domain LTQ03_09865 PF01627 Hpt domain LTQ03_09865 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_09865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_09865 PF00672 HAMP domain LTQ03_09865 PF17149 Periplasmic sensor domain found in signal transduction proteins LTQ03_09870 PF05175 Methyltransferase small domain LTQ03_09870 PF08468 Methyltransferase small domain N-terminal LTQ03_09875 PF01594 AI-2E family transporter LTQ03_09880 PF00202 Aminotransferase class-III LTQ03_09885 PF01521 Iron-sulphur cluster biosynthesis LTQ03_09895 PF00873 AcrB/AcrD/AcrF family LTQ03_09900 PF01476 LysM domain LTQ03_09900 PF01551 Peptidase family M23 LTQ03_09900 PF08525 Opacity-associated protein A N-terminal motif LTQ03_09905 PF00579 tRNA synthetases class I (W and Y) LTQ03_09910 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_09910 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_09910 PF01610 Transposase LTQ03_09915 PF01769 Divalent cation transporter LTQ03_09915 PF00571 CBS domain LTQ03_09915 PF03448 MgtE intracellular N domain LTQ03_09920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LTQ03_09925 PF13609 Gram-negative porin LTQ03_09930 PF01272 Transcription elongation factor, GreA/GreB, C-term LTQ03_09930 PF03449 Transcription elongation factor, N-terminal LTQ03_09935 PF01985 CRS1 / YhbY (CRM) domain LTQ03_09940 PF01728 FtsJ-like methyltransferase LTQ03_09945 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_09945 PF17862 AAA+ lid domain LTQ03_09945 PF06480 FtsH Extracellular LTQ03_09945 PF01434 Peptidase family M41 LTQ03_09950 PF00809 Pterin binding enzyme LTQ03_09955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ03_09955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ03_09955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ03_09955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ03_09960 PF03840 Preprotein translocase SecG subunit LTQ03_09975 PF02576 RimP N-terminal domain LTQ03_09975 PF17384 RimP C-terminal SH3 domain LTQ03_09980 PF00575 S1 RNA binding domain LTQ03_09980 PF08529 NusA N-terminal domain LTQ03_09980 PF13184 NusA-like KH domain LTQ03_09985 PF00009 Elongation factor Tu GTP binding domain LTQ03_09985 PF11987 Translation-initiation factor 2 LTQ03_09985 PF08364 Bacterial translation initiation factor IF-2 associated region LTQ03_09985 PF04760 Translation initiation factor IF-2, N-terminal region LTQ03_09990 PF02033 Ribosome-binding factor A LTQ03_09995 PF09157 Pseudouridine synthase II TruB, C-terminal LTQ03_09995 PF16198 tRNA pseudouridylate synthase B C-terminal domain LTQ03_09995 PF01509 TruB family pseudouridylate synthase (N terminal domain) LTQ03_10000 PF00312 Ribosomal protein S15 LTQ03_10005 PF01138 3' exoribonuclease family, domain 1 LTQ03_10005 PF03725 3' exoribonuclease family, domain 2 LTQ03_10005 PF00575 S1 RNA binding domain LTQ03_10005 PF00013 KH domain LTQ03_10005 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LTQ03_10010 PF07719 Tetratricopeptide repeat LTQ03_10010 PF13181 Tetratricopeptide repeat LTQ03_10020 PF01554 MatE LTQ03_10025 PF01136 Peptidase family U32 LTQ03_10030 PF01136 Peptidase family U32 LTQ03_10035 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_10035 PF03707 Bacterial signalling protein N terminal repeat LTQ03_10035 PF00563 EAL domain LTQ03_10040 PF02036 SCP-2 sterol transfer family LTQ03_10045 PF13508 Acetyltransferase (GNAT) domain LTQ03_10055 PF00583 Acetyltransferase (GNAT) family LTQ03_10060 PF00009 Elongation factor Tu GTP binding domain LTQ03_10060 PF03144 Elongation factor Tu domain 2 LTQ03_10060 PF16658 Class II release factor RF3, C-terminal domain LTQ03_10070 PF01026 TatD related DNase LTQ03_10075 PF07670 Nucleoside recognition LTQ03_10075 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ03_10075 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ03_10080 PF01791 DeoC/LacD family aldolase LTQ03_10085 PF00591 Glycosyl transferase family, a/b domain LTQ03_10085 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LTQ03_10085 PF02885 Glycosyl transferase family, helical bundle domain LTQ03_10090 PF01676 Metalloenzyme superfamily LTQ03_10095 PF01048 Phosphorylase superfamily LTQ03_10105 PF18429 Domain of unknown function (DUF5609) LTQ03_10115 PF18073 Rubredoxin metal binding domain LTQ03_10120 PF14492 Elongation Factor G, domain II LTQ03_10120 PF03144 Elongation factor Tu domain 2 LTQ03_10120 PF00679 Elongation factor G C-terminus LTQ03_10120 PF03764 Elongation factor G, domain IV LTQ03_10120 PF00009 Elongation factor Tu GTP binding domain LTQ03_10125 PF09905 DNA-binding protein VF530 LTQ03_10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_10130 PF03466 LysR substrate binding domain LTQ03_10140 PF03466 LysR substrate binding domain LTQ03_10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_10160 PF00501 AMP-binding enzyme LTQ03_10165 PF02311 AraC-like ligand binding domain LTQ03_10165 PF12833 Helix-turn-helix domain LTQ03_10190 PF04972 BON domain LTQ03_10190 PF00263 Bacterial type II and III secretion system protein LTQ03_10190 PF13629 Pilus formation protein N terminal region LTQ03_10220 PF00437 Type II/IV secretion system protein LTQ03_10240 PF02417 Chromate transporter LTQ03_10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_10245 PF03466 LysR substrate binding domain LTQ03_10255 PF00356 Bacterial regulatory proteins, lacI family LTQ03_10260 PF16874 Glycosyl hydrolase family 36 C-terminal domain LTQ03_10260 PF16875 Glycosyl hydrolase family 36 N-terminal domain LTQ03_10265 PF00474 Sodium:solute symporter family LTQ03_10270 PF01554 MatE LTQ03_10275 PF00005 ABC transporter LTQ03_10275 PF17912 MalK OB fold domain LTQ03_10280 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_10285 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_10295 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LTQ03_10295 PF02837 Glycosyl hydrolases family 2, sugar binding domain LTQ03_10295 PF16353 Domain of unknown function(DUF4981) LTQ03_10295 PF02929 Beta galactosidase small chain LTQ03_10295 PF00703 Glycosyl hydrolases family 2 LTQ03_10300 PF01204 Trehalase LTQ03_10310 PF13520 Amino acid permease LTQ03_10315 PF13520 Amino acid permease LTQ03_10320 PF04074 YhcH/YjgK/YiaL LTQ03_10325 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LTQ03_10325 PF02929 Beta galactosidase small chain LTQ03_10325 PF16353 Domain of unknown function(DUF4981) LTQ03_10325 PF02837 Glycosyl hydrolases family 2, sugar binding domain LTQ03_10325 PF00703 Glycosyl hydrolases family 2 LTQ03_10330 PF00356 Bacterial regulatory proteins, lacI family LTQ03_10335 PF16363 GDP-mannose 4,6 dehydratase LTQ03_10340 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LTQ03_10340 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LTQ03_10345 PF10509 Galactokinase galactose-binding signature LTQ03_10345 PF08544 GHMP kinases C terminal LTQ03_10345 PF00288 GHMP kinases N terminal domain LTQ03_10350 PF01263 Aldose 1-epimerase LTQ03_10355 PF00356 Bacterial regulatory proteins, lacI family LTQ03_10360 PF01588 Putative tRNA binding domain LTQ03_10375 PF00962 Adenosine/AMP deaminase LTQ03_10395 PF07687 Peptidase dimerisation domain LTQ03_10395 PF01546 Peptidase family M20/M25/M40 LTQ03_10400 PF00860 Permease family LTQ03_10405 PF00156 Phosphoribosyl transferase domain LTQ03_10410 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LTQ03_10415 PF07417 Sigma factor-binding transcriptional regulator Crl LTQ03_10420 PF00696 Amino acid kinase family LTQ03_10420 PF01472 PUA domain LTQ03_10425 PF00171 Aldehyde dehydrogenase family LTQ03_10430 PF03477 ATP cone domain LTQ03_10435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ03_10435 PF01872 RibD C-terminal domain LTQ03_10440 PF00677 Lumazine binding domain LTQ03_10445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LTQ03_10445 PF00925 GTP cyclohydrolase II LTQ03_10450 PF00885 6,7-dimethyl-8-ribityllumazine synthase LTQ03_10455 PF01029 NusB family LTQ03_10460 PF00586 AIR synthase related protein, N-terminal domain LTQ03_10460 PF02769 AIR synthase related protein, C-terminal domain LTQ03_10465 PF04608 Phosphatidylglycerophosphatase A LTQ03_10475 PF13006 Insertion element 4 transposase N-terminal LTQ03_10475 PF01609 Transposase DDE domain LTQ03_10480 PF02780 Transketolase, C-terminal domain LTQ03_10480 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LTQ03_10480 PF02779 Transketolase, pyrimidine binding domain LTQ03_10485 PF00348 Polyprenyl synthetase LTQ03_10490 PF02609 Exonuclease VII small subunit LTQ03_10495 PF01618 MotA/TolQ/ExbB proton channel family LTQ03_10500 PF13677 Membrane MotB of proton-channel complex MotA/MotB LTQ03_10500 PF00691 OmpA family LTQ03_10505 PF02568 Thiamine biosynthesis protein (ThiI) LTQ03_10505 PF02926 THUMP domain LTQ03_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_10510 PF03466 LysR substrate binding domain LTQ03_10525 PF01728 FtsJ-like methyltransferase LTQ03_10525 PF18125 RlmM ferredoxin-like domain LTQ03_10530 PF01223 DNA/RNA non-specific endonuclease LTQ03_10535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LTQ03_10535 PF01367 5'-3' exonuclease, C-terminal SAM fold LTQ03_10540 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LTQ03_10540 PF03641 Possible lysine decarboxylase LTQ03_10540 PF11892 Domain of unknown function (DUF3412) LTQ03_10545 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_10555 PF14489 QueF-like protein LTQ03_10555 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LTQ03_10560 PF07348 Syd protein (SUKH-2) LTQ03_10565 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LTQ03_10570 PF01610 Transposase LTQ03_10570 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_10570 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_10575 PF03180 NLPA lipoprotein LTQ03_10580 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_10585 PF00005 ABC transporter LTQ03_10585 PF09383 NIL domain LTQ03_10600 PF00356 Bacterial regulatory proteins, lacI family LTQ03_10605 PF00367 phosphotransferase system, EIIB LTQ03_10605 PF02378 Phosphotransferase system, EIIC LTQ03_10610 PF00128 Alpha amylase, catalytic domain LTQ03_10610 PF16657 Maltogenic Amylase, C-terminal domain LTQ03_10630 PF00464 Serine hydroxymethyltransferase LTQ03_10645 PF06786 Uncharacterised protein family (UPF0253) LTQ03_10655 PF14706 Transposase DNA-binding LTQ03_10655 PF02281 Transposase Tn5 dimerisation domain LTQ03_10655 PF01609 Transposase DDE domain LTQ03_10660 PF04073 Aminoacyl-tRNA editing domain LTQ03_10660 PF03129 Anticodon binding domain LTQ03_10660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ03_10665 PF18389 TrmO C-terminal domain LTQ03_10665 PF01980 tRNA-methyltransferase O LTQ03_10670 PF01197 Ribosomal protein L31 LTQ03_10675 PF00444 Ribosomal protein L36 LTQ03_10680 PF03806 AbgT putative transporter family LTQ03_10690 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LTQ03_10715 PF04287 tRNA pseudouridine synthase C LTQ03_10720 PF00849 RNA pseudouridylate synthase LTQ03_10725 PF11944 Protein of unknown function (DUF3461) LTQ03_10730 PF01966 HD domain LTQ03_10730 PF08335 GlnD PII-uridylyltransferase LTQ03_10730 PF01842 ACT domain LTQ03_10730 PF01909 Nucleotidyltransferase domain LTQ03_10735 PF00557 Metallopeptidase family M24 LTQ03_10740 PF00318 Ribosomal protein S2 LTQ03_10745 PF00889 Elongation factor TS LTQ03_10750 PF00696 Amino acid kinase family LTQ03_10755 PF01765 Ribosome recycling factor LTQ03_10760 PF01255 Putative undecaprenyl diphosphate synthase LTQ03_10770 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LTQ03_10770 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LTQ03_10770 PF13288 DXP reductoisomerase C-terminal domain LTQ03_10775 PF17820 PDZ domain LTQ03_10775 PF02163 Peptidase family M50 LTQ03_10780 PF01103 Surface antigen LTQ03_10780 PF07244 Surface antigen variable number repeat LTQ03_10785 PF03938 Outer membrane protein (OmpH-like) LTQ03_10790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LTQ03_10790 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_10795 PF07977 FabA-like domain LTQ03_10800 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LTQ03_10800 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_10805 PF02684 Lipid-A-disaccharide synthetase LTQ03_10810 PF01351 Ribonuclease HII LTQ03_10815 PF14579 Helix-hairpin-helix motif LTQ03_10815 PF02811 PHP domain LTQ03_10815 PF01336 OB-fold nucleic acid binding domain LTQ03_10815 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ03_10815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ03_10820 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LTQ03_10825 PF01171 PP-loop family LTQ03_10825 PF09179 TilS substrate binding domain LTQ03_10825 PF11734 TilS substrate C-terminal domain LTQ03_10830 PF00034 Cytochrome c LTQ03_10835 PF00543 Nitrogen regulatory protein P-II LTQ03_10840 PF03372 Endonuclease/Exonuclease/phosphatase family LTQ03_10850 PF01476 LysM domain LTQ03_10850 PF01464 Transglycosylase SLT domain LTQ03_10855 PF00753 Metallo-beta-lactamase superfamily LTQ03_10855 PF16123 Hydroxyacylglutathione hydrolase C-terminus LTQ03_10860 PF08241 Methyltransferase domain LTQ03_10865 PF00075 RNase H LTQ03_10870 PF00929 Exonuclease LTQ03_10880 PF02770 Acyl-CoA dehydrogenase, middle domain LTQ03_10880 PF09317 Domain of unknown function (DUF1974) LTQ03_10880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LTQ03_10880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LTQ03_10885 PF13580 SIS domain LTQ03_10890 PF13230 Glutamine amidotransferases class-II LTQ03_10895 PF00551 Formyl transferase LTQ03_10900 PF02769 AIR synthase related protein, C-terminal domain LTQ03_10900 PF00586 AIR synthase related protein, N-terminal domain LTQ03_10910 PF00860 Permease family LTQ03_10925 PF03358 NADPH-dependent FMN reductase LTQ03_10930 PF03960 ArsC family LTQ03_10935 PF13181 Tetratricopeptide repeat LTQ03_10935 PF01435 Peptidase family M48 LTQ03_10945 PF01594 AI-2E family transporter LTQ03_10950 PF00578 AhpC/TSA family LTQ03_10955 PF01842 ACT domain LTQ03_10960 PF00701 Dihydrodipicolinate synthetase family LTQ03_10965 PF06804 NlpB/DapX lipoprotein LTQ03_10980 PF07687 Peptidase dimerisation domain LTQ03_10980 PF01546 Peptidase family M20/M25/M40 LTQ03_10985 PF03960 ArsC family LTQ03_11005 PF11143 Protein of unknown function (DUF2919) LTQ03_11010 PF04261 Dyp-type peroxidase family LTQ03_11015 PF00700 Bacterial flagellin C-terminal helical region LTQ03_11015 PF07196 Flagellin hook IN motif LTQ03_11015 PF00669 Bacterial flagellin N-terminal helical region LTQ03_11020 PF00700 Bacterial flagellin C-terminal helical region LTQ03_11020 PF00669 Bacterial flagellin N-terminal helical region LTQ03_11020 PF07196 Flagellin hook IN motif LTQ03_11025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LTQ03_11030 PF00391 PEP-utilising enzyme, mobile domain LTQ03_11030 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ03_11030 PF05524 PEP-utilising enzyme, N-terminal LTQ03_11035 PF00381 PTS HPr component phosphorylation site LTQ03_11040 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_11050 PF04354 ZipA, C-terminal FtsZ-binding domain LTQ03_11055 PF01653 NAD-dependent DNA ligase adenylation domain LTQ03_11055 PF00533 BRCA1 C Terminus (BRCT) domain LTQ03_11055 PF03120 NAD-dependent DNA ligase OB-fold domain LTQ03_11055 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LTQ03_11055 PF12826 Helix-hairpin-helix motif LTQ03_11060 PF13609 Gram-negative porin LTQ03_11070 PF13411 MerR HTH family regulatory protein LTQ03_11080 PF01145 SPFH domain / Band 7 family LTQ03_11080 PF16200 C-terminal region of band_7 LTQ03_11085 PF00085 Thioredoxin LTQ03_11090 PF00106 short chain dehydrogenase LTQ03_11095 PF01370 NAD dependent epimerase/dehydratase family LTQ03_11095 PF08338 Domain of unknown function (DUF1731) LTQ03_11100 PF07556 Protein of unknown function (DUF1538) LTQ03_11105 PF07556 Protein of unknown function (DUF1538) LTQ03_11120 PF12850 Calcineurin-like phosphoesterase superfamily domain LTQ03_11130 PF17323 Trans-membrane regulatory protein ToxS LTQ03_11135 PF00486 Transcriptional regulatory protein, C terminal LTQ03_11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_11140 PF00183 Hsp90 protein LTQ03_11145 PF05191 Adenylate kinase, active site lid LTQ03_11150 PF00762 Ferrochelatase LTQ03_11155 PF00854 POT family LTQ03_11160 PF02357 Transcription termination factor nusG LTQ03_11165 PF00733 Asparagine synthase LTQ03_11165 PF13537 Glutamine amidotransferase domain LTQ03_11170 PF02254 TrkA-N domain LTQ03_11170 PF00999 Sodium/hydrogen exchanger family LTQ03_11175 PF00480 ROK family LTQ03_11175 PF01047 MarR family LTQ03_11180 PF01979 Amidohydrolase family LTQ03_11185 PF00367 phosphotransferase system, EIIB LTQ03_11185 PF02378 Phosphotransferase system, EIIC LTQ03_11190 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ03_11190 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LTQ03_11195 PF01475 Ferric uptake regulator family LTQ03_11205 PF00258 Flavodoxin LTQ03_11215 PF12697 Alpha/beta hydrolase family LTQ03_11220 PF03925 SeqA protein C-terminal domain LTQ03_11220 PF17206 SeqA protein N-terminal domain LTQ03_11225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ03_11225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ03_11225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ03_11225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ03_11235 PF01784 NIF3 (NGG1p interacting factor 3) LTQ03_11240 PF00285 Citrate synthase, C-terminal domain LTQ03_11245 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LTQ03_11250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LTQ03_11255 PF00890 FAD binding domain LTQ03_11255 PF02910 Fumarate reductase flavoprotein C-term LTQ03_11260 PF13085 2Fe-2S iron-sulfur cluster binding domain LTQ03_11265 PF16078 2-oxoglutarate dehydrogenase N-terminus LTQ03_11265 PF00676 Dehydrogenase E1 component LTQ03_11265 PF16870 2-oxoglutarate dehydrogenase C-terminal LTQ03_11265 PF02779 Transketolase, pyrimidine binding domain LTQ03_11270 PF02817 e3 binding domain LTQ03_11270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LTQ03_11270 PF00364 Biotin-requiring enzyme LTQ03_11275 PF08442 ATP-grasp domain LTQ03_11275 PF00549 CoA-ligase LTQ03_11280 PF02629 CoA binding domain LTQ03_11280 PF00549 CoA-ligase LTQ03_11285 PF00950 ABC 3 transport family LTQ03_11290 PF00005 ABC transporter LTQ03_11295 PF01297 Zinc-uptake complex component A periplasmic LTQ03_11300 PF12833 Helix-turn-helix domain LTQ03_11305 PF04023 FeoA domain LTQ03_11310 PF02421 Ferrous iron transport protein B LTQ03_11310 PF07664 Ferrous iron transport protein B C terminus LTQ03_11310 PF07670 Nucleoside recognition LTQ03_11325 PF05746 DALR anticodon binding domain LTQ03_11325 PF00750 tRNA synthetases class I (R) LTQ03_11325 PF03485 Arginyl tRNA synthetase N terminal domain LTQ03_11330 PF06185 YecM protein LTQ03_11335 PF00551 Formyl transferase LTQ03_11335 PF01842 ACT domain LTQ03_11345 PF04851 Type III restriction enzyme, res subunit LTQ03_11345 PF13307 Helicase C-terminal domain LTQ03_11350 PF00814 Glycoprotease family LTQ03_11365 PF00561 alpha/beta hydrolase fold LTQ03_11370 PF00501 AMP-binding enzyme LTQ03_11370 PF13193 AMP-binding enzyme C-terminal domain LTQ03_11375 PF01612 3'-5' exonuclease LTQ03_11375 PF00570 HRDC domain LTQ03_11380 PF03776 Septum formation topological specificity factor MinE LTQ03_11385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LTQ03_11390 PF05209 Septum formation inhibitor MinC, N-terminal domain LTQ03_11390 PF03775 Septum formation inhibitor MinC, C-terminal domain LTQ03_11395 PF05166 YcgL domain LTQ03_11400 PF13406 Transglycosylase SLT domain LTQ03_11405 PF03466 LysR substrate binding domain LTQ03_11405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_11410 PF07670 Nucleoside recognition LTQ03_11410 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ03_11410 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ03_11420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LTQ03_11420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LTQ03_11430 PF01264 Chorismate synthase LTQ03_11435 PF03458 UPF0126 domain LTQ03_11440 PF04315 Elongation factor P hydroxylase LTQ03_11445 PF08891 YfcL protein LTQ03_11450 PF03358 NADPH-dependent FMN reductase LTQ03_11455 PF01266 FAD dependent oxidoreductase LTQ03_11455 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LTQ03_11460 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_11460 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_11465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ03_11465 PF11890 Domain of unknown function (DUF3410) LTQ03_11465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ03_11470 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ03_11470 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ03_11480 PF01416 tRNA pseudouridine synthase LTQ03_11485 PF01039 Carboxyl transferase domain LTQ03_11485 PF17848 Acetyl-coA carboxylase zinc finger domain LTQ03_11490 PF02875 Mur ligase family, glutamate ligase domain LTQ03_11490 PF08245 Mur ligase middle domain LTQ03_11495 PF05036 Sporulation related domain LTQ03_11500 PF02674 Colicin V production protein LTQ03_11505 PF00156 Phosphoribosyl transferase domain LTQ03_11510 PF03466 LysR substrate binding domain LTQ03_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_11515 PF00072 Response regulator receiver domain LTQ03_11520 PF04304 Protein of unknown function (DUF454) LTQ03_11525 PF00156 Phosphoribosyl transferase domain LTQ03_11530 PF12170 DNA polymerase III tau subunit V interacting with alpha LTQ03_11530 PF12169 DNA polymerase III subunits gamma and tau domain III LTQ03_11535 PF02575 YbaB/EbfC DNA-binding family LTQ03_11540 PF02132 RecR protein LTQ03_11540 PF13662 Toprim domain LTQ03_11545 PF00230 Major intrinsic protein LTQ03_11550 PF03692 Putative zinc- or iron-chelating domain LTQ03_11555 PF03692 Putative zinc- or iron-chelating domain LTQ03_11560 PF02899 Phage integrase, N-terminal SAM-like domain LTQ03_11560 PF00589 Phage integrase family LTQ03_11610 PF01610 Transposase LTQ03_11610 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_11610 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_11620 PF00245 Alkaline phosphatase LTQ03_11625 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_11640 PF13847 Methyltransferase domain LTQ03_11645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_11645 PF13426 PAS domain LTQ03_11645 PF08447 PAS fold LTQ03_11650 PF01263 Aldose 1-epimerase LTQ03_11655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ03_11655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ03_11660 PF01641 SelR domain LTQ03_11670 PF07023 Protein of unknown function (DUF1315) LTQ03_11675 PF00710 Asparaginase, N-terminal LTQ03_11675 PF17763 Glutaminase/Asparaginase C-terminal domain LTQ03_11680 PF01343 Peptidase family S49 LTQ03_11685 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_11685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ03_11690 PF00881 Nitroreductase family LTQ03_11695 PF01131 DNA topoisomerase LTQ03_11695 PF01751 Toprim domain LTQ03_11705 PF00106 short chain dehydrogenase LTQ03_11710 PF00850 Histone deacetylase domain LTQ03_11715 PF02743 Cache domain LTQ03_11715 PF00672 HAMP domain LTQ03_11715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_11725 PF02082 Transcriptional regulator LTQ03_11745 PF11893 Domain of unknown function (DUF3413) LTQ03_11745 PF00884 Sulfatase LTQ03_11750 PF07208 Protein of unknown function (DUF1414) LTQ03_11755 PF04245 37-kD nucleoid-associated bacterial protein LTQ03_11770 PF03553 Na+/H+ antiporter family LTQ03_11775 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ03_11775 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ03_11780 PF00027 Cyclic nucleotide-binding domain LTQ03_11780 PF00520 Ion transport protein LTQ03_11785 PF01914 MarC family integral membrane protein LTQ03_11790 PF00171 Aldehyde dehydrogenase family LTQ03_11790 PF00465 Iron-containing alcohol dehydrogenase LTQ03_11805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LTQ03_11805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LTQ03_11810 PF00462 Glutaredoxin LTQ03_11820 PF03553 Na+/H+ antiporter family LTQ03_11820 PF13726 Na+-H+ antiporter family LTQ03_11825 PF00929 Exonuclease LTQ03_11830 PF18393 MotY N-terminal domain LTQ03_11830 PF00691 OmpA family LTQ03_11835 PF10952 Protein of unknown function (DUF2753) LTQ03_11840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_11845 PF10576 Iron-sulfur binding domain of endonuclease III LTQ03_11845 PF00633 Helix-hairpin-helix motif LTQ03_11845 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ03_11850 PF02508 Rnf-Nqr subunit, membrane protein LTQ03_11855 PF04205 FMN-binding domain LTQ03_11860 PF03116 NQR2, RnfD, RnfE family LTQ03_11865 PF10531 SLBB domain LTQ03_11865 PF12838 4Fe-4S dicluster domain LTQ03_11865 PF13375 RnfC Barrel sandwich hybrid domain LTQ03_11865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LTQ03_11870 PF04060 Putative Fe-S cluster LTQ03_11875 PF02508 Rnf-Nqr subunit, membrane protein LTQ03_11885 PF17757 UvrB interaction domain LTQ03_11885 PF00271 Helicase conserved C-terminal domain LTQ03_11885 PF04851 Type III restriction enzyme, res subunit LTQ03_11885 PF02151 UvrB/uvrC motif LTQ03_11885 PF12344 Ultra-violet resistance protein B LTQ03_11890 PF00158 Sigma-54 interaction domain LTQ03_11890 PF02954 Bacterial regulatory protein, Fis family LTQ03_11890 PF00072 Response regulator receiver domain LTQ03_11895 PF01627 Hpt domain LTQ03_11900 PF01933 Uncharacterised protein family UPF0052 LTQ03_11905 PF04055 Radical SAM superfamily LTQ03_11905 PF06463 Molybdenum Cofactor Synthesis C LTQ03_11910 PF00994 Probable molybdopterin binding domain LTQ03_11915 PF01967 MoaC family LTQ03_11920 PF02597 ThiS family LTQ03_11925 PF02391 MoaE protein LTQ03_11930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_11935 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_11940 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_11940 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ03_11945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_11945 PF00005 ABC transporter LTQ03_11950 PF00005 ABC transporter LTQ03_11950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_11955 PF13409 Glutathione S-transferase, N-terminal domain LTQ03_11960 PF07085 DRTGG domain LTQ03_11960 PF01515 Phosphate acetyl/butaryl transferase LTQ03_11965 PF00871 Acetokinase family LTQ03_11970 PF04217 Protein of unknown function, DUF412 LTQ03_11980 PF02903 Alpha amylase, N-terminal ig-like domain LTQ03_11980 PF00128 Alpha amylase, catalytic domain LTQ03_11985 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_11985 PF05230 MASE2 domain LTQ03_11990 PF01207 Dihydrouridine synthase (Dus) LTQ03_11995 PF02810 SEC-C motif LTQ03_11995 PF07517 SecA DEAD-like domain LTQ03_11995 PF01043 SecA preprotein cross-linking domain LTQ03_11995 PF07516 SecA Wing and Scaffold domain LTQ03_12000 PF02600 Disulfide bond formation protein DsbB LTQ03_12005 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LTQ03_12010 PF00392 Bacterial regulatory proteins, gntR family LTQ03_12010 PF07840 FadR C-terminal domain LTQ03_12020 PF09334 tRNA synthetases class I (M) LTQ03_12020 PF01588 Putative tRNA binding domain LTQ03_12025 PF10609 NUBPL iron-transfer P-loop NTPase LTQ03_12030 PF00485 Phosphoribulokinase / Uridine kinase family LTQ03_12035 PF05170 AsmA family LTQ03_12045 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LTQ03_12045 PF12557 Cob(I)alamin adenosyltransferase N terminal LTQ03_12050 PF01451 Low molecular weight phosphotyrosine protein phosphatase LTQ03_12055 PF00916 Sulfate permease family LTQ03_12055 PF01740 STAS domain LTQ03_12060 PF00575 S1 RNA binding domain LTQ03_12060 PF12111 Polyribonucleotide phosphorylase C terminal LTQ03_12060 PF10150 Ribonuclease E/G family LTQ03_12065 PF00849 RNA pseudouridylate synthase LTQ03_12065 PF01479 S4 domain LTQ03_12070 PF02545 Maf-like protein LTQ03_12075 PF02620 Large ribosomal RNA subunit accumulation protein YceD LTQ03_12080 PF01783 Ribosomal L32p protein family LTQ03_12085 PF02504 Fatty acid synthesis protein LTQ03_12090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LTQ03_12090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LTQ03_12095 PF00698 Acyl transferase domain LTQ03_12105 PF00550 Phosphopantetheine attachment site LTQ03_12110 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_12110 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_12115 PF01063 Amino-transferase class IV LTQ03_12120 PF02618 YceG-like family LTQ03_12125 PF02223 Thymidylate kinase LTQ03_12130 PF09115 DNA polymerase III, delta subunit, C terminal LTQ03_12135 PF01026 TatD related DNase LTQ03_12140 PF00367 phosphotransferase system, EIIB LTQ03_12140 PF02378 Phosphotransferase system, EIIC LTQ03_12160 PF01734 Patatin-like phospholipase LTQ03_12165 PF00224 Pyruvate kinase, barrel domain LTQ03_12165 PF02887 Pyruvate kinase, alpha/beta domain LTQ03_12170 PF00480 ROK family LTQ03_12175 PF01584 CheW-like domain LTQ03_12175 PF00072 Response regulator receiver domain LTQ03_12180 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ03_12180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ03_12180 PF14579 Helix-hairpin-helix motif LTQ03_12180 PF02811 PHP domain LTQ03_12180 PF01336 OB-fold nucleic acid binding domain LTQ03_12190 PF00154 recA bacterial DNA recombination protein LTQ03_12195 PF00106 short chain dehydrogenase LTQ03_12200 PF01343 Peptidase family S49 LTQ03_12200 PF08496 Peptidase family S49 N-terminal LTQ03_12205 PF04293 SpoVR like protein LTQ03_12210 PF04285 Protein of unknown function (DUF444) LTQ03_12215 PF08298 PrkA AAA domain LTQ03_12215 PF06798 PrkA serine protein kinase C-terminal domain LTQ03_12220 PF06629 MltA-interacting protein MipA LTQ03_12235 PF03887 YfbU domain LTQ03_12240 PF04055 Radical SAM superfamily LTQ03_12250 PF01228 Glycine radical LTQ03_12250 PF02901 Pyruvate formate lyase-like LTQ03_12265 PF00005 ABC transporter LTQ03_12270 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_12275 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_12280 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_12285 PF18642 Immunomodulating metalloprotease helical domain LTQ03_12285 PF18650 Immunomodulating metalloprotease N-terminal domain LTQ03_12285 PF13402 Peptidase M60, enhancin and enhancin-like LTQ03_12290 PF03372 Endonuclease/Exonuclease/phosphatase family LTQ03_12295 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LTQ03_12295 PF00326 Prolyl oligopeptidase family LTQ03_12300 PF07690 Major Facilitator Superfamily LTQ03_12305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_12305 PF00672 HAMP domain LTQ03_12310 PF08007 Cupin superfamily protein LTQ03_12315 PF10689 Protein of unknown function (DUF2496) LTQ03_12325 PF01925 Sulfite exporter TauE/SafE LTQ03_12330 PF06733 DEAD_2 LTQ03_12330 PF13307 Helicase C-terminal domain LTQ03_12340 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LTQ03_12345 PF00849 RNA pseudouridylate synthase LTQ03_12350 PF03971 Monomeric isocitrate dehydrogenase LTQ03_12355 PF00313 'Cold-shock' DNA-binding domain LTQ03_12360 PF02617 ATP-dependent Clp protease adaptor protein ClpS LTQ03_12365 PF02861 Clp amino terminal domain, pathogenicity island component LTQ03_12365 PF07724 AAA domain (Cdc48 subfamily) LTQ03_12365 PF17871 AAA lid domain LTQ03_12365 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ03_12365 PF00004 ATPase family associated with various cellular activities (AAA) LTQ03_12370 PF01176 Translation initiation factor 1A / IF-1 LTQ03_12375 PF04377 Arginine-tRNA-protein transferase, C terminus LTQ03_12375 PF04376 Arginine-tRNA-protein transferase, N terminus LTQ03_12380 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LTQ03_12390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LTQ03_12395 PF10692 Protein of unknown function (DUF2498) LTQ03_12400 PF08272 Topoisomerase I zinc-ribbon-like LTQ03_12400 PF01131 DNA topoisomerase LTQ03_12400 PF01751 Toprim domain LTQ03_12400 PF01396 Topoisomerase DNA binding C4 zinc finger LTQ03_12405 PF00483 Nucleotidyl transferase LTQ03_12410 PF00534 Glycosyl transferases group 1 LTQ03_12410 PF08323 Starch synthase catalytic domain LTQ03_12430 PF04994 TfoX C-terminal domain LTQ03_12430 PF04993 TfoX N-terminal domain LTQ03_12435 PF00356 Bacterial regulatory proteins, lacI family LTQ03_12440 PF02613 Nitrate reductase delta subunit LTQ03_12445 PF00072 Response regulator receiver domain LTQ03_12445 PF00486 Transcriptional regulatory protein, C terminal LTQ03_12450 PF02698 DUF218 domain LTQ03_12455 PF13847 Methyltransferase domain LTQ03_12460 PF17192 MukF middle domain LTQ03_12460 PF03882 MukF winged-helix domain LTQ03_12460 PF17193 MukF C-terminal domain LTQ03_12465 PF04288 MukE-like family LTQ03_12470 PF04310 MukB N-terminal LTQ03_12470 PF16330 MukB hinge domain LTQ03_12475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LTQ03_12475 PF12838 4Fe-4S dicluster domain LTQ03_12475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_12475 PF00384 Molybdopterin oxidoreductase LTQ03_12475 PF01568 Molydopterin dinucleotide binding domain LTQ03_12490 PF08443 RimK-like ATP-grasp domain LTQ03_12490 PF18030 RimK PreATP-grasp domain LTQ03_12495 PF08003 Protein of unknown function (DUF1698) LTQ03_12500 PF13649 Methyltransferase domain LTQ03_12505 PF01904 Protein of unknown function DUF72 LTQ03_12510 PF00152 tRNA synthetases class II (D, K and N) LTQ03_12510 PF02938 GAD domain LTQ03_12510 PF01336 OB-fold nucleic acid binding domain LTQ03_12515 PF02075 Crossover junction endodeoxyribonuclease RuvC LTQ03_12520 PF00672 HAMP domain LTQ03_12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_12520 PF02203 Tar ligand binding domain homologue LTQ03_12525 PF07499 RuvA, C-terminal domain LTQ03_12525 PF01330 RuvA N terminal domain LTQ03_12530 PF17864 RuvB AAA lid domain LTQ03_12530 PF05491 RuvB C-terminal winged helix domain LTQ03_12530 PF05496 Holliday junction DNA helicase RuvB P-loop domain LTQ03_12535 PF01654 Cytochrome bd terminal oxidase subunit I LTQ03_12540 PF02322 Cytochrome bd terminal oxidase subunit II LTQ03_12545 PF08173 Membrane bound YbgT-like protein LTQ03_12555 PF03061 Thioesterase superfamily LTQ03_12560 PF01618 MotA/TolQ/ExbB proton channel family LTQ03_12565 PF02472 Biopolymer transport protein ExbD/TolR LTQ03_12575 PF07676 WD40-like Beta Propeller Repeat LTQ03_12575 PF04052 TolB amino-terminal domain LTQ03_12580 PF00691 OmpA family LTQ03_12585 PF16331 TolA binding protein trimerisation LTQ03_12585 PF13174 Tetratricopeptide repeat LTQ03_12590 PF02445 Quinolinate synthetase A protein LTQ03_12605 PF00072 Response regulator receiver domain LTQ03_12605 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_12605 PF09308 LuxQ, periplasmic LTQ03_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_12610 PF06610 L-alanine exporter LTQ03_12620 PF03616 Sodium/glutamate symporter LTQ03_12625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_12625 PF03466 LysR substrate binding domain LTQ03_12630 PF11658 Cellulose biosynthesis protein BcsG LTQ03_12650 PF06564 Cellulose biosynthesis protein BcsQ LTQ03_12655 PF07238 PilZ domain LTQ03_12655 PF03552 Cellulose synthase LTQ03_12655 PF00535 Glycosyl transferase family 2 LTQ03_12660 PF03170 Bacterial cellulose synthase subunit LTQ03_12665 PF01270 Glycosyl hydrolases family 8 LTQ03_12670 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LTQ03_12675 PF01266 FAD dependent oxidoreductase LTQ03_12695 PF00072 Response regulator receiver domain LTQ03_12695 PF00486 Transcriptional regulatory protein, C terminal LTQ03_12700 PF00535 Glycosyl transferase family 2 LTQ03_12705 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LTQ03_12715 PF08497 Radical SAM N-terminal LTQ03_12715 PF11842 Domain of unknown function (DUF3362) LTQ03_12715 PF04055 Radical SAM superfamily LTQ03_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_12730 PF03466 LysR substrate binding domain LTQ03_12735 PF08267 Cobalamin-independent synthase, N-terminal domain LTQ03_12735 PF01717 Cobalamin-independent synthase, Catalytic domain LTQ03_12745 PF03795 YCII-related domain LTQ03_12750 PF03061 Thioesterase superfamily LTQ03_12755 PF04279 Intracellular septation protein A LTQ03_12765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_12765 PF03466 LysR substrate binding domain LTQ03_12770 PF00155 Aminotransferase class I and II LTQ03_12775 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_12780 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_12785 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_12790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_12795 PF00375 Sodium:dicarboxylate symporter family LTQ03_12805 PF16200 C-terminal region of band_7 LTQ03_12805 PF01145 SPFH domain / Band 7 family LTQ03_12810 PF00290 Tryptophan synthase alpha chain LTQ03_12815 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_12820 PF00218 Indole-3-glycerol phosphate synthase LTQ03_12820 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LTQ03_12825 PF00591 Glycosyl transferase family, a/b domain LTQ03_12825 PF02885 Glycosyl transferase family, helical bundle domain LTQ03_12830 PF00117 Glutamine amidotransferase class-I LTQ03_12835 PF04715 Anthranilate synthase component I, N terminal region LTQ03_12835 PF00425 chorismate binding enzyme LTQ03_12840 PF08056 Tryptophan operon leader peptide LTQ03_12845 PF02811 PHP domain LTQ03_12850 PF01300 Telomere recombination LTQ03_12855 PF00849 RNA pseudouridylate synthase LTQ03_12855 PF01479 S4 domain LTQ03_12865 PF04269 Protein of unknown function, DUF440 LTQ03_12870 PF08207 Elongation factor P (EF-P) KOW-like domain LTQ03_12870 PF09285 Elongation factor P, C-terminal LTQ03_12870 PF01132 Elongation factor P (EF-P) OB domain LTQ03_12880 PF00136 DNA polymerase family B LTQ03_12880 PF03104 DNA polymerase family B, exonuclease domain LTQ03_12885 PF00196 Bacterial regulatory proteins, luxR family LTQ03_12885 PF00072 Response regulator receiver domain LTQ03_12890 PF01541 GIY-YIG catalytic domain LTQ03_12890 PF02151 UvrB/uvrC motif LTQ03_12890 PF08459 UvrC Helix-hairpin-helix N-terminal LTQ03_12895 PF01066 CDP-alcohol phosphatidyltransferase LTQ03_12920 PF00202 Aminotransferase class-III LTQ03_12925 PF03435 Saccharopine dehydrogenase NADP binding domain LTQ03_12925 PF16653 Saccharopine dehydrogenase C-terminal domain LTQ03_12930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LTQ03_12945 PF00994 Probable molybdopterin binding domain LTQ03_12950 PF04976 DMSO reductase anchor subunit (DmsC) LTQ03_12955 PF13247 4Fe-4S dicluster domain LTQ03_12955 PF12800 4Fe-4S binding domain LTQ03_12960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_12960 PF00384 Molybdopterin oxidoreductase LTQ03_12960 PF01568 Molydopterin dinucleotide binding domain LTQ03_12965 PF02613 Nitrate reductase delta subunit LTQ03_12975 PF00175 Oxidoreductase NAD-binding domain LTQ03_12975 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_12975 PF00970 Oxidoreductase FAD-binding domain LTQ03_12980 PF00268 Ribonucleotide reductase, small chain LTQ03_12985 PF00317 Ribonucleotide reductase, all-alpha domain LTQ03_12985 PF02867 Ribonucleotide reductase, barrel domain LTQ03_12985 PF03477 ATP cone domain LTQ03_12995 PF00521 DNA gyrase/topoisomerase IV, subunit A LTQ03_12995 PF03989 DNA gyrase C-terminal domain, beta-propeller LTQ03_13005 PF00581 Rhodanese-like domain LTQ03_13010 PF02335 Cytochrome c552 LTQ03_13020 PF13247 4Fe-4S dicluster domain LTQ03_13025 PF03916 Polysulphide reductase, NrfD LTQ03_13030 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LTQ03_13030 PF01578 Cytochrome C assembly protein LTQ03_13035 PF08534 Redoxin LTQ03_13040 PF03918 Cytochrome C biogenesis protein LTQ03_13050 PF00925 GTP cyclohydrolase II LTQ03_13075 PF03734 L,D-transpeptidase catalytic domain LTQ03_13075 PF01471 Putative peptidoglycan binding domain LTQ03_13080 PF05951 Bacterial protein of unknown function (DUF882) LTQ03_13085 PF00753 Metallo-beta-lactamase superfamily LTQ03_13100 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_13110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_13115 PF17200 Single Cache domain 2 LTQ03_13115 PF07730 Histidine kinase LTQ03_13120 PF00072 Response regulator receiver domain LTQ03_13120 PF00196 Bacterial regulatory proteins, luxR family LTQ03_13125 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_13130 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_13135 PF02743 Cache domain LTQ03_13135 PF00672 HAMP domain LTQ03_13135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_13140 PF00664 ABC transporter transmembrane region LTQ03_13140 PF00005 ABC transporter LTQ03_13145 PF00664 ABC transporter transmembrane region LTQ03_13145 PF00005 ABC transporter LTQ03_13150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_13160 PF02463 RecF/RecN/SMC N terminal domain LTQ03_13170 PF00266 Aminotransferase class-V LTQ03_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_13180 PF03466 LysR substrate binding domain LTQ03_13185 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_13195 PF00072 Response regulator receiver domain LTQ03_13195 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_13200 PF06942 GlpM protein LTQ03_13205 PF00939 Sodium:sulfate symporter transmembrane region LTQ03_13210 PF02698 DUF218 domain LTQ03_13215 PF00390 Malic enzyme, N-terminal domain LTQ03_13215 PF03949 Malic enzyme, NAD binding domain LTQ03_13220 PF00270 DEAD/DEAH box helicase LTQ03_13220 PF00271 Helicase conserved C-terminal domain LTQ03_13220 PF04408 Helicase associated domain (HA2) LTQ03_13220 PF11898 Domain of unknown function (DUF3418) LTQ03_13220 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LTQ03_13230 PF01259 SAICAR synthetase LTQ03_13250 PF00691 OmpA family LTQ03_13265 PF01565 FAD binding domain LTQ03_13265 PF13183 4Fe-4S dicluster domain LTQ03_13265 PF02913 FAD linked oxidases, C-terminal domain LTQ03_13270 PF04191 Phospholipid methyltransferase LTQ03_13280 PF00221 Aromatic amino acid lyase LTQ03_13285 PF01175 Urocanase Rossmann-like domain LTQ03_13285 PF17392 Urocanase C-terminal domain LTQ03_13285 PF17391 Urocanase N-terminal domain LTQ03_13290 PF00491 Arginase family LTQ03_13295 PF01979 Amidohydrolase family LTQ03_13300 PF00392 Bacterial regulatory proteins, gntR family LTQ03_13300 PF07702 UTRA domain LTQ03_13305 PF07070 SpoOM protein LTQ03_13315 PF03129 Anticodon binding domain LTQ03_13315 PF02824 TGS domain LTQ03_13315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ03_13315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LTQ03_13320 PF00707 Translation initiation factor IF-3, C-terminal domain LTQ03_13320 PF05198 Translation initiation factor IF-3, N-terminal domain LTQ03_13325 PF01632 Ribosomal protein L35 LTQ03_13330 PF00453 Ribosomal protein L20 LTQ03_13335 PF04266 ASCH domain LTQ03_13350 PF00005 ABC transporter LTQ03_13350 PF12848 ABC transporter LTQ03_13350 PF16326 ABC transporter C-terminal domain LTQ03_13355 PF00440 Bacterial regulatory proteins, tetR family LTQ03_13355 PF17932 Tetracyclin repressor-like, C-terminal domain LTQ03_13360 PF00171 Aldehyde dehydrogenase family LTQ03_13365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LTQ03_13365 PF17944 Arginine decarboxylase C-terminal helical extension LTQ03_13365 PF17810 Arginine decarboxylase helical bundle domain LTQ03_13370 PF00491 Arginase family LTQ03_13380 PF01464 Transglycosylase SLT domain LTQ03_13380 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_13385 PF00474 Sodium:solute symporter family LTQ03_13390 PF01081 KDPG and KHG aldolase LTQ03_13395 PF00294 pfkB family carbohydrate kinase LTQ03_13400 PF07883 Cupin domain LTQ03_13405 PF07940 Heparinase II/III-like protein LTQ03_13405 PF05426 Alginate lyase LTQ03_13410 PF05426 Alginate lyase LTQ03_13410 PF07940 Heparinase II/III-like protein LTQ03_13415 PF01557 Fumarylacetoacetate (FAA) hydrolase family LTQ03_13420 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_13425 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_13430 PF00005 ABC transporter LTQ03_13440 PF07729 FCD domain LTQ03_13440 PF00392 Bacterial regulatory proteins, gntR family LTQ03_13445 PF01970 Tripartite tricarboxylate transporter TctA family LTQ03_13455 PF03401 Tripartite tricarboxylate transporter family receptor LTQ03_13465 PF00474 Sodium:solute symporter family LTQ03_13475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ03_13475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ03_13480 PF02743 Cache domain LTQ03_13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_13480 PF00672 HAMP domain LTQ03_13485 PF08787 Alginate lyase LTQ03_13490 PF08787 Alginate lyase LTQ03_13505 PF08787 Alginate lyase LTQ03_13515 PF07729 FCD domain LTQ03_13515 PF00392 Bacterial regulatory proteins, gntR family LTQ03_13525 PF07729 FCD domain LTQ03_13525 PF00392 Bacterial regulatory proteins, gntR family LTQ03_13530 PF00571 CBS domain LTQ03_13535 PF00929 Exonuclease LTQ03_13535 PF02811 PHP domain LTQ03_13535 PF11490 DNA polymerase III polC-type N-terminus II LTQ03_13535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ03_13535 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ03_13535 PF14579 Helix-hairpin-helix motif LTQ03_13545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_13545 PF00672 HAMP domain LTQ03_13545 PF12729 Four helix bundle sensory module for signal transduction LTQ03_13555 PF00474 Sodium:solute symporter family LTQ03_13565 PF01625 Peptide methionine sulfoxide reductase LTQ03_13565 PF01641 SelR domain LTQ03_13580 PF01212 Beta-eliminating lyase LTQ03_13585 PF03466 LysR substrate binding domain LTQ03_13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_13605 PF04151 Bacterial pre-peptidase C-terminal domain LTQ03_13605 PF02868 Thermolysin metallopeptidase, alpha-helical domain LTQ03_13605 PF03413 Peptidase propeptide and YPEB domain LTQ03_13605 PF07504 Fungalysin/Thermolysin Propeptide Motif LTQ03_13605 PF01447 Thermolysin metallopeptidase, catalytic domain LTQ03_13615 PF01548 Transposase LTQ03_13615 PF02371 Transposase IS116/IS110/IS902 family LTQ03_13640 PF00939 Sodium:sulfate symporter transmembrane region LTQ03_13645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_13645 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_13645 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_13650 PF02954 Bacterial regulatory protein, Fis family LTQ03_13650 PF00072 Response regulator receiver domain LTQ03_13650 PF00158 Sigma-54 interaction domain LTQ03_13670 PF13673 Acetyltransferase (GNAT) domain LTQ03_13680 PF01928 CYTH domain LTQ03_13700 PF08267 Cobalamin-independent synthase, N-terminal domain LTQ03_13700 PF01717 Cobalamin-independent synthase, Catalytic domain LTQ03_13710 PF01925 Sulfite exporter TauE/SafE LTQ03_13740 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LTQ03_13745 PF01810 LysE type translocator LTQ03_13750 PF01117 Aerolysin toxin LTQ03_13750 PF03440 Aerolysin/Pertussis toxin (APT) domain LTQ03_13765 PF01610 Transposase LTQ03_13765 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_13765 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_13770 PF01235 Sodium:alanine symporter family LTQ03_13790 PF01235 Sodium:alanine symporter family LTQ03_13805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_13820 PF17203 Single cache domain 3 LTQ03_13820 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LTQ03_13820 PF00989 PAS fold LTQ03_13820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_13825 PF00072 Response regulator receiver domain LTQ03_13825 PF12431 Transcriptional regulator LTQ03_13830 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LTQ03_13830 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LTQ03_13835 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LTQ03_13840 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LTQ03_13840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ03_13845 PF00072 Response regulator receiver domain LTQ03_13850 PF09905 DNA-binding protein VF530 LTQ03_13865 PF01970 Tripartite tricarboxylate transporter TctA family LTQ03_13890 PF07690 Major Facilitator Superfamily LTQ03_13905 PF00285 Citrate synthase, C-terminal domain LTQ03_13910 PF00330 Aconitase family (aconitate hydratase) LTQ03_13910 PF00694 Aconitase C-terminal domain LTQ03_13915 PF04303 PrpF protein LTQ03_13920 PF16177 Acetyl-coenzyme A synthetase N-terminus LTQ03_13920 PF00501 AMP-binding enzyme LTQ03_13920 PF13193 AMP-binding enzyme C-terminal domain LTQ03_13950 PF04055 Radical SAM superfamily LTQ03_13955 PF06508 Queuosine biosynthesis protein QueC LTQ03_13960 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_13960 PF17151 Periplasmic sensor domain LTQ03_13970 PF00691 OmpA family LTQ03_13970 PF13488 Glycine zipper LTQ03_13990 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ03_13990 PF17785 PUA-like domain LTQ03_13995 PF12729 Four helix bundle sensory module for signal transduction LTQ03_13995 PF00672 HAMP domain LTQ03_13995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_14000 PF00708 Acylphosphatase LTQ03_14005 PF04358 DsrC like protein LTQ03_14010 PF01027 Inhibitor of apoptosis-promoting Bax1 LTQ03_14015 PF00005 ABC transporter LTQ03_14020 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14025 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14030 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_14035 PF10414 Sirohaem synthase dimerisation region LTQ03_14035 PF14824 Sirohaem biosynthesis protein central LTQ03_14035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ03_14040 PF04461 Protein of unknown function (DUF520) LTQ03_14045 PF00793 DAHP synthetase I family LTQ03_14050 PF00391 PEP-utilising enzyme, mobile domain LTQ03_14050 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ03_14050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LTQ03_14065 PF17783 CvfB-like winged helix domain LTQ03_14065 PF13509 S1 domain LTQ03_14070 PF01189 16S rRNA methyltransferase RsmB/F LTQ03_14070 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LTQ03_14070 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LTQ03_14075 PF02470 MlaD protein LTQ03_14080 PF04403 Paraquat-inducible protein A LTQ03_14085 PF00664 ABC transporter transmembrane region LTQ03_14085 PF00005 ABC transporter LTQ03_14090 PF13185 GAF domain LTQ03_14095 PF04352 ProQ/FINO family LTQ03_14095 PF17516 ProQ C-terminal domain LTQ03_14100 PF11818 C-terminal domain of tail specific protease (DUF3340) LTQ03_14100 PF00595 PDZ domain LTQ03_14100 PF03572 Peptidase family S41 LTQ03_14100 PF17804 Tail specific protease N-terminal domain LTQ03_14110 PF01433 Peptidase family M1 domain LTQ03_14110 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LTQ03_14110 PF11940 Domain of unknown function (DUF3458) Ig-like fold LTQ03_14120 PF05088 Bacterial NAD-glutamate dehydrogenase LTQ03_14125 PF01180 Dihydroorotate dehydrogenase LTQ03_14130 PF07126 Cell-division protein ZapC LTQ03_14135 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ03_14135 PF02926 THUMP domain LTQ03_14135 PF01170 Putative RNA methylase family UPF0020 LTQ03_14145 PF00005 ABC transporter LTQ03_14145 PF12848 ABC transporter LTQ03_14145 PF16326 ABC transporter C-terminal domain LTQ03_14155 PF04957 Ribosome modulation factor LTQ03_14160 PF07977 FabA-like domain LTQ03_14165 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ03_14165 PF13654 AAA domain LTQ03_14170 PF06303 MatP N-terminal domain LTQ03_14170 PF17414 MatP C-terminal ribbon-helix-helix domain LTQ03_14205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_14205 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_14205 PF09308 LuxQ, periplasmic LTQ03_14205 PF00072 Response regulator receiver domain LTQ03_14220 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ03_14235 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LTQ03_14235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ03_14245 PF00403 Heavy-metal-associated domain LTQ03_14260 PF00027 Cyclic nucleotide-binding domain LTQ03_14260 PF13545 Crp-like helix-turn-helix domain LTQ03_14265 PF00582 Universal stress protein family LTQ03_14270 PF01171 PP-loop family LTQ03_14290 PF08402 TOBE domain LTQ03_14290 PF00005 ABC transporter LTQ03_14295 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14300 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14305 PF13416 Bacterial extracellular solute-binding protein LTQ03_14310 PF13416 Bacterial extracellular solute-binding protein LTQ03_14325 PF02146 Sir2 family LTQ03_14330 PF00909 Ammonium Transporter Family LTQ03_14345 PF13247 4Fe-4S dicluster domain LTQ03_14350 PF00384 Molybdopterin oxidoreductase LTQ03_14350 PF01568 Molydopterin dinucleotide binding domain LTQ03_14350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_14360 PF02613 Nitrate reductase delta subunit LTQ03_14380 PF02634 FdhD/NarQ family LTQ03_14385 PF00672 HAMP domain LTQ03_14385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_14390 PF12848 ABC transporter LTQ03_14390 PF00005 ABC transporter LTQ03_14405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_14405 PF00672 HAMP domain LTQ03_14405 PF17200 Single Cache domain 2 LTQ03_14410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_14410 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_14415 PF02954 Bacterial regulatory protein, Fis family LTQ03_14415 PF00072 Response regulator receiver domain LTQ03_14415 PF00158 Sigma-54 interaction domain LTQ03_14420 PF12849 PBP superfamily domain LTQ03_14425 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14430 PF08402 TOBE domain LTQ03_14430 PF00005 ABC transporter LTQ03_14435 PF12804 MobA-like NTP transferase domain LTQ03_14440 PF00994 Probable molybdopterin binding domain LTQ03_14440 PF03454 MoeA C-terminal region (domain IV) LTQ03_14440 PF03453 MoeA N-terminal region (domain I and II) LTQ03_14450 PF00480 ROK family LTQ03_14455 PF03942 DTW domain LTQ03_14465 PF12729 Four helix bundle sensory module for signal transduction LTQ03_14465 PF00672 HAMP domain LTQ03_14465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_14470 PF00877 NlpC/P60 family LTQ03_14480 PF03881 Fructosamine kinase LTQ03_14490 PF00677 Lumazine binding domain LTQ03_14495 PF01554 MatE LTQ03_14500 PF01068 ATP dependent DNA ligase domain LTQ03_14500 PF14743 DNA ligase OB-like domain LTQ03_14510 PF00691 OmpA family LTQ03_14530 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14535 PF00005 ABC transporter LTQ03_14535 PF00571 CBS domain LTQ03_14545 PF02954 Bacterial regulatory protein, Fis family LTQ03_14545 PF00072 Response regulator receiver domain LTQ03_14545 PF00158 Sigma-54 interaction domain LTQ03_14550 PF13439 Glycosyltransferase Family 4 LTQ03_14550 PF00534 Glycosyl transferases group 1 LTQ03_14575 PF13439 Glycosyltransferase Family 4 LTQ03_14575 PF00534 Glycosyl transferases group 1 LTQ03_14585 PF02397 Bacterial sugar transferase LTQ03_14590 PF03466 LysR substrate binding domain LTQ03_14590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_14600 PF00873 AcrB/AcrD/AcrF family LTQ03_14605 PF02321 Outer membrane efflux protein LTQ03_14615 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LTQ03_14660 PF01202 Shikimate kinase LTQ03_14700 PF08241 Methyltransferase domain LTQ03_14720 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_14765 PF01548 Transposase LTQ03_14765 PF02371 Transposase IS116/IS110/IS902 family LTQ03_14775 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14780 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_14785 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_14790 PF00005 ABC transporter LTQ03_14795 PF00664 ABC transporter transmembrane region LTQ03_14795 PF00005 ABC transporter LTQ03_14805 PF01609 Transposase DDE domain LTQ03_14805 PF13006 Insertion element 4 transposase N-terminal LTQ03_14810 PF12392 Collagenase LTQ03_14810 PF01136 Peptidase family U32 LTQ03_14825 PF03616 Sodium/glutamate symporter LTQ03_14855 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_14870 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_14875 PF07516 SecA Wing and Scaffold domain LTQ03_14875 PF07517 SecA DEAD-like domain LTQ03_14875 PF02810 SEC-C motif LTQ03_14875 PF01043 SecA preprotein cross-linking domain LTQ03_14920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_14955 PF07859 alpha/beta hydrolase fold LTQ03_14955 PF00934 PE family LTQ03_14975 PF00293 NUDIX domain LTQ03_14985 PF01588 Putative tRNA binding domain LTQ03_14985 PF09334 tRNA synthetases class I (M) LTQ03_14985 PF08264 Anticodon-binding domain of tRNA LTQ03_15005 PF03737 Aldolase/RraA LTQ03_15030 PF01810 LysE type translocator LTQ03_15035 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_15035 PF12464 Maltose acetyltransferase LTQ03_15045 PF00849 RNA pseudouridylate synthase LTQ03_15045 PF01479 S4 domain LTQ03_15060 PF00293 NUDIX domain LTQ03_15080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ03_15080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ03_15090 PF03009 Glycerophosphoryl diester phosphodiesterase family LTQ03_15095 PF07690 Major Facilitator Superfamily LTQ03_15105 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LTQ03_15115 PF00593 TonB dependent receptor LTQ03_15115 PF07715 TonB-dependent Receptor Plug Domain LTQ03_15120 PF00668 Condensation domain LTQ03_15120 PF00501 AMP-binding enzyme LTQ03_15120 PF13193 AMP-binding enzyme C-terminal domain LTQ03_15120 PF00550 Phosphopantetheine attachment site LTQ03_15125 PF00550 Phosphopantetheine attachment site LTQ03_15125 PF00668 Condensation domain LTQ03_15125 PF13193 AMP-binding enzyme C-terminal domain LTQ03_15125 PF00501 AMP-binding enzyme LTQ03_15130 PF03621 MbtH-like protein LTQ03_15135 PF00005 ABC transporter LTQ03_15140 PF01032 FecCD transport family LTQ03_15145 PF01497 Periplasmic binding protein LTQ03_15150 PF00005 ABC transporter LTQ03_15170 PF00582 Universal stress protein family LTQ03_15175 PF03441 FAD binding domain of DNA photolyase LTQ03_15175 PF00875 DNA photolyase LTQ03_15180 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LTQ03_15200 PF13476 AAA domain LTQ03_15205 PF12320 Type 5 capsule protein repressor C-terminal domain LTQ03_15205 PF00149 Calcineurin-like phosphoesterase LTQ03_15220 PF01810 LysE type translocator LTQ03_15225 PF00082 Subtilase family LTQ03_15230 PF00583 Acetyltransferase (GNAT) family LTQ03_15235 PF08448 PAS fold LTQ03_15235 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15240 PF13649 Methyltransferase domain LTQ03_15245 PF00593 TonB dependent receptor LTQ03_15245 PF07715 TonB-dependent Receptor Plug Domain LTQ03_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15250 PF03466 LysR substrate binding domain LTQ03_15255 PF00704 Glycosyl hydrolases family 18 LTQ03_15270 PF12729 Four helix bundle sensory module for signal transduction LTQ03_15270 PF00672 HAMP domain LTQ03_15270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_15285 PF00884 Sulfatase LTQ03_15290 PF03466 LysR substrate binding domain LTQ03_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15295 PF03466 LysR substrate binding domain LTQ03_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15300 PF00709 Adenylosuccinate synthetase LTQ03_15305 PF03707 Bacterial signalling protein N terminal repeat LTQ03_15305 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15305 PF00563 EAL domain LTQ03_15315 PF01638 HxlR-like helix-turn-helix LTQ03_15330 PF12102 Domain of unknown function (DUF3578) LTQ03_15330 PF07728 AAA domain (dynein-related subfamily) LTQ03_15335 PF18766 SWI2/SNF2 ATPase LTQ03_15335 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LTQ03_15335 PF11867 Domain of unknown function (DUF3387) LTQ03_15340 PF01420 Type I restriction modification DNA specificity domain LTQ03_15345 PF02384 N-6 DNA Methylase LTQ03_15350 PF13361 UvrD-like helicase C-terminal domain LTQ03_15350 PF00580 UvrD/REP helicase N-terminal domain LTQ03_15350 PF12705 PD-(D/E)XK nuclease superfamily LTQ03_15375 PF05230 MASE2 domain LTQ03_15375 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15380 PF07687 Peptidase dimerisation domain LTQ03_15380 PF01546 Peptidase family M20/M25/M40 LTQ03_15395 PF04204 Homoserine O-succinyltransferase LTQ03_15405 PF05971 RNA methyltransferase LTQ03_15410 PF01863 Protein of unknown function DUF45 LTQ03_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15420 PF03466 LysR substrate binding domain LTQ03_15425 PF07690 Major Facilitator Superfamily LTQ03_15435 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15445 PF00583 Acetyltransferase (GNAT) family LTQ03_15470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15470 PF03466 LysR substrate binding domain LTQ03_15490 PF02322 Cytochrome bd terminal oxidase subunit II LTQ03_15495 PF01654 Cytochrome bd terminal oxidase subunit I LTQ03_15500 PF00392 Bacterial regulatory proteins, gntR family LTQ03_15500 PF00155 Aminotransferase class I and II LTQ03_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15515 PF03466 LysR substrate binding domain LTQ03_15520 PF14765 Polyketide synthase dehydratase LTQ03_15520 PF16197 Ketoacyl-synthetase C-terminal extension LTQ03_15520 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_15520 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_15520 PF08659 KR domain LTQ03_15520 PF00107 Zinc-binding dehydrogenase LTQ03_15520 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_15520 PF00550 Phosphopantetheine attachment site LTQ03_15520 PF00698 Acyl transferase domain LTQ03_15530 PF00005 ABC transporter LTQ03_15535 PF01032 FecCD transport family LTQ03_15540 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LTQ03_15555 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LTQ03_15560 PF02654 Cobalamin-5-phosphate synthase LTQ03_15565 PF02277 Phosphoribosyltransferase LTQ03_15570 PF01613 Flavin reductase like domain LTQ03_15580 PF00375 Sodium:dicarboxylate symporter family LTQ03_15600 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LTQ03_15600 PF07685 CobB/CobQ-like glutamine amidotransferase domain LTQ03_15610 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_15615 PF03459 TOBE domain LTQ03_15615 PF00005 ABC transporter LTQ03_15630 PF00360 Phytochrome region LTQ03_15630 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15630 PF01590 GAF domain LTQ03_15630 PF00563 EAL domain LTQ03_15640 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15640 PF17158 Membrane-associated sensor, integral membrane domain LTQ03_15655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LTQ03_15655 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LTQ03_15655 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LTQ03_15660 PF02233 NAD(P) transhydrogenase beta subunit LTQ03_15665 PF10137 Predicted nucleotide-binding protein containing TIR-like domain LTQ03_15675 PF02796 Helix-turn-helix domain of resolvase LTQ03_15675 PF00239 Resolvase, N terminal domain LTQ03_15750 PF00072 Response regulator receiver domain LTQ03_15750 PF00486 Transcriptional regulatory protein, C terminal LTQ03_15765 PF03701 Uncharacterised protein family (UPF0181) LTQ03_15770 PF08448 PAS fold LTQ03_15770 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15810 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH LTQ03_15835 PF01253 Translation initiation factor SUI1 LTQ03_15850 PF07478 D-ala D-ala ligase C-terminus LTQ03_15850 PF01820 D-ala D-ala ligase N-terminus LTQ03_15855 PF05036 Sporulation related domain LTQ03_15860 PF13380 CoA binding domain LTQ03_15860 PF13607 Succinyl-CoA ligase like flavodoxin domain LTQ03_15860 PF00583 Acetyltransferase (GNAT) family LTQ03_15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_15865 PF03466 LysR substrate binding domain LTQ03_15870 PF07715 TonB-dependent Receptor Plug Domain LTQ03_15870 PF00593 TonB dependent receptor LTQ03_15875 PF16363 GDP-mannose 4,6 dehydratase LTQ03_15880 PF00563 EAL domain LTQ03_15880 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15880 PF05231 MASE1 LTQ03_15880 PF08447 PAS fold LTQ03_15880 PF08448 PAS fold LTQ03_15880 PF13426 PAS domain LTQ03_15890 PF07715 TonB-dependent Receptor Plug Domain LTQ03_15890 PF00593 TonB dependent receptor LTQ03_15895 PF03746 LamB/YcsF family LTQ03_15900 PF02682 Carboxyltransferase domain, subdomain C and D LTQ03_15905 PF02626 Carboxyltransferase domain, subdomain A and B LTQ03_15920 PF00005 ABC transporter LTQ03_15925 PF13472 GDSL-like Lipase/Acylhydrolase family LTQ03_15930 PF07055 Enoyl reductase FAD binding domain LTQ03_15930 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LTQ03_15930 PF12241 Trans-2-enoyl-CoA reductase catalytic region LTQ03_15935 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_15935 PF00563 EAL domain LTQ03_15935 PF00498 FHA domain LTQ03_15945 PF00905 Penicillin binding protein transpeptidase domain LTQ03_15945 PF03717 Penicillin-binding Protein dimerisation domain LTQ03_15950 PF00684 DnaJ central domain LTQ03_15950 PF01556 DnaJ C terminal domain LTQ03_15950 PF00226 DnaJ domain LTQ03_15970 PF00892 EamA-like transporter family LTQ03_15975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_15975 PF12793 Sugar transport-related sRNA regulator N-term LTQ03_15985 PF03061 Thioesterase superfamily LTQ03_15990 PF01435 Peptidase family M48 LTQ03_16000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ03_16005 PF12262 Bacterial virulence factor lipase N-terminal LTQ03_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16020 PF03466 LysR substrate binding domain LTQ03_16035 PF08543 Phosphomethylpyrimidine kinase LTQ03_16040 PF00155 Aminotransferase class I and II LTQ03_16045 PF02080 TrkA-C domain LTQ03_16045 PF06826 Predicted Permease Membrane Region LTQ03_16055 PF13533 Biotin-lipoyl like LTQ03_16070 PF00135 Carboxylesterase family LTQ03_16075 PF13091 PLD-like domain LTQ03_16080 PF01177 Asp/Glu/Hydantoin racemase LTQ03_16085 PF07244 Surface antigen variable number repeat LTQ03_16085 PF01103 Surface antigen LTQ03_16085 PF17243 POTRA domain TamA domain 1 LTQ03_16090 PF00270 DEAD/DEAH box helicase LTQ03_16090 PF00271 Helicase conserved C-terminal domain LTQ03_16105 PF03741 Integral membrane protein TerC family LTQ03_16110 PF02872 5'-nucleotidase, C-terminal domain LTQ03_16110 PF00149 Calcineurin-like phosphoesterase LTQ03_16115 PF11398 Protein of unknown function (DUF2813) LTQ03_16120 PF06496 Protein of unknown function (DUF1097) LTQ03_16125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16125 PF03466 LysR substrate binding domain LTQ03_16130 PF01226 Formate/nitrite transporter LTQ03_16135 PF04264 YceI-like domain LTQ03_16140 PF01292 Prokaryotic cytochrome b561 LTQ03_16155 PF00563 EAL domain LTQ03_16155 PF12792 CSS motif domain associated with EAL LTQ03_16160 PF00873 AcrB/AcrD/AcrF family LTQ03_16165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_16165 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_16170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_16170 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_16180 PF00270 DEAD/DEAH box helicase LTQ03_16180 PF00271 Helicase conserved C-terminal domain LTQ03_16185 PF04336 Acyl carrier protein phosphodiesterase LTQ03_16190 PF03222 Tryptophan/tyrosine permease family LTQ03_16195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_16200 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_16205 PF11849 Domain of unknown function (DUF3369) LTQ03_16220 PF00294 pfkB family carbohydrate kinase LTQ03_16225 PF01268 Formate--tetrahydrofolate ligase LTQ03_16230 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_16230 PF17158 Membrane-associated sensor, integral membrane domain LTQ03_16235 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_16240 PF00472 RF-1 domain LTQ03_16260 PF01571 Aminomethyltransferase folate-binding domain LTQ03_16260 PF08669 Glycine cleavage T-protein C-terminal barrel domain LTQ03_16270 PF00464 Serine hydroxymethyltransferase LTQ03_16275 PF01597 Glycine cleavage H-protein LTQ03_16280 PF02347 Glycine cleavage system P-protein LTQ03_16295 PF01554 MatE LTQ03_16300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_16300 PF00672 HAMP domain LTQ03_16300 PF02743 Cache domain LTQ03_16310 PF07726 ATPase family associated with various cellular activities (AAA) LTQ03_16310 PF17863 AAA lid domain LTQ03_16330 PF07584 Aerotolerance regulator N-terminal LTQ03_16330 PF00092 von Willebrand factor type A domain LTQ03_16345 PF03466 LysR substrate binding domain LTQ03_16345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16350 PF03466 LysR substrate binding domain LTQ03_16350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16360 PF01810 LysE type translocator LTQ03_16375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_16385 PF00579 tRNA synthetases class I (W and Y) LTQ03_16395 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_16400 PF07690 Major Facilitator Superfamily LTQ03_16410 PF01161 Phosphatidylethanolamine-binding protein LTQ03_16415 PF00672 HAMP domain LTQ03_16415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_16415 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_16415 PF00989 PAS fold LTQ03_16420 PF00072 Response regulator receiver domain LTQ03_16420 PF00486 Transcriptional regulatory protein, C terminal LTQ03_16435 PF03466 LysR substrate binding domain LTQ03_16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16440 PF13533 Biotin-lipoyl like LTQ03_16445 PF07690 Major Facilitator Superfamily LTQ03_16460 PF17200 Single Cache domain 2 LTQ03_16460 PF00672 HAMP domain LTQ03_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_16475 PF04542 Sigma-70 region 2 LTQ03_16475 PF04539 Sigma-70 region 3 LTQ03_16475 PF00140 Sigma-70 factor, region 1.2 LTQ03_16475 PF04545 Sigma-70, region 4 LTQ03_16485 PF01610 Transposase LTQ03_16485 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_16485 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_16500 PF13533 Biotin-lipoyl like LTQ03_16505 PF00072 Response regulator receiver domain LTQ03_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_16510 PF02321 Outer membrane efflux protein LTQ03_16515 PF00664 ABC transporter transmembrane region LTQ03_16515 PF00005 ABC transporter LTQ03_16520 PF00005 ABC transporter LTQ03_16530 PF00672 HAMP domain LTQ03_16530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_16530 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_16530 PF01627 Hpt domain LTQ03_16530 PF00072 Response regulator receiver domain LTQ03_16530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ03_16555 PF00672 HAMP domain LTQ03_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_16570 PF04055 Radical SAM superfamily LTQ03_16570 PF13186 Iron-sulfur cluster-binding domain LTQ03_16575 PF03781 Sulfatase-modifying factor enzyme 1 LTQ03_16585 PF13407 Periplasmic binding protein domain LTQ03_16595 PF00563 EAL domain LTQ03_16595 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_16595 PF03707 Bacterial signalling protein N terminal repeat LTQ03_16600 PF03466 LysR substrate binding domain LTQ03_16600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16615 PF13519 von Willebrand factor type A domain LTQ03_16630 PF17863 AAA lid domain LTQ03_16630 PF07726 ATPase family associated with various cellular activities (AAA) LTQ03_16640 PF00884 Sulfatase LTQ03_16645 PF00884 Sulfatase LTQ03_16650 PF03150 Di-haem cytochrome c peroxidase LTQ03_16650 PF00034 Cytochrome c LTQ03_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_16655 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_16655 PF09308 LuxQ, periplasmic LTQ03_16655 PF00072 Response regulator receiver domain LTQ03_16665 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LTQ03_16680 PF00962 Adenosine/AMP deaminase LTQ03_16685 PF00196 Bacterial regulatory proteins, luxR family LTQ03_16685 PF00072 Response regulator receiver domain LTQ03_16700 PF02469 Fasciclin domain LTQ03_16725 PF02567 Phenazine biosynthesis-like protein LTQ03_16730 PF01810 LysE type translocator LTQ03_16740 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_16740 PF03707 Bacterial signalling protein N terminal repeat LTQ03_16740 PF00563 EAL domain LTQ03_16760 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ03_16770 PF00034 Cytochrome c LTQ03_16770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ03_16785 PF00561 alpha/beta hydrolase fold LTQ03_16800 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_16810 PF00171 Aldehyde dehydrogenase family LTQ03_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16820 PF03466 LysR substrate binding domain LTQ03_16830 PF00119 ATP synthase A chain LTQ03_16835 PF00137 ATP synthase subunit C LTQ03_16840 PF00430 ATP synthase B/B' CF(0) LTQ03_16845 PF00213 ATP synthase delta (OSCP) subunit LTQ03_16850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_16850 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ03_16850 PF00306 ATP synthase alpha/beta chain, C terminal domain LTQ03_16855 PF00231 ATP synthase LTQ03_16860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ03_16860 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ03_16865 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LTQ03_16865 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LTQ03_16875 PF03466 LysR substrate binding domain LTQ03_16875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_16880 PF00561 alpha/beta hydrolase fold LTQ03_16895 PF00815 Histidinol dehydrogenase LTQ03_16900 PF03328 HpcH/HpaI aldolase/citrate lyase family LTQ03_16905 PF00356 Bacterial regulatory proteins, lacI family LTQ03_16910 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_16920 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_16920 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_16925 PF03459 TOBE domain LTQ03_16925 PF17912 MalK OB fold domain LTQ03_16925 PF00005 ABC transporter LTQ03_16935 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_16940 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_16970 PF00873 AcrB/AcrD/AcrF family LTQ03_16980 PF02321 Outer membrane efflux protein LTQ03_17015 PF03466 LysR substrate binding domain LTQ03_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17020 PF07969 Amidohydrolase family LTQ03_17030 PF01979 Amidohydrolase family LTQ03_17045 PF00005 ABC transporter LTQ03_17045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_17050 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_17050 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ03_17055 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_17060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_17080 PF05025 RbsD / FucU transport protein family LTQ03_17085 PF00005 ABC transporter LTQ03_17090 PF02653 Branched-chain amino acid transport system / permease component LTQ03_17095 PF13407 Periplasmic binding protein domain LTQ03_17100 PF00294 pfkB family carbohydrate kinase LTQ03_17105 PF00356 Bacterial regulatory proteins, lacI family LTQ03_17110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_17110 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_17110 PF09308 LuxQ, periplasmic LTQ03_17110 PF00072 Response regulator receiver domain LTQ03_17115 PF00795 Carbon-nitrogen hydrolase LTQ03_17125 PF00563 EAL domain LTQ03_17125 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_17125 PF03707 Bacterial signalling protein N terminal repeat LTQ03_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17130 PF03466 LysR substrate binding domain LTQ03_17160 PF13614 AAA domain LTQ03_17180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_17180 PF00384 Molybdopterin oxidoreductase LTQ03_17180 PF01568 Molydopterin dinucleotide binding domain LTQ03_17185 PF18267 Rubredoxin NAD+ reductase C-terminal domain LTQ03_17185 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_17185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ03_17185 PF04324 BFD-like [2Fe-2S] binding domain LTQ03_17185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ03_17195 PF07690 Major Facilitator Superfamily LTQ03_17200 PF00069 Protein kinase domain LTQ03_17200 PF03793 PASTA domain LTQ03_17205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LTQ03_17205 PF00356 Bacterial regulatory proteins, lacI family LTQ03_17210 PF00381 PTS HPr component phosphorylation site LTQ03_17210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_17215 PF00294 pfkB family carbohydrate kinase LTQ03_17220 PF02378 Phosphotransferase system, EIIC LTQ03_17220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_17230 PF04116 Fatty acid hydroxylase superfamily LTQ03_17235 PF00072 Response regulator receiver domain LTQ03_17235 PF00486 Transcriptional regulatory protein, C terminal LTQ03_17270 PF02798 Glutathione S-transferase, N-terminal domain LTQ03_17275 PF01844 HNH endonuclease LTQ03_17285 PF07690 Major Facilitator Superfamily LTQ03_17290 PF18081 Fanconi anemia-associated nuclease SAP domain LTQ03_17290 PF08774 VRR-NUC domain LTQ03_17320 PF00672 HAMP domain LTQ03_17320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_17320 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_17320 PF01627 Hpt domain LTQ03_17320 PF00072 Response regulator receiver domain LTQ03_17320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ03_17330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LTQ03_17335 PF02142 MGS-like domain LTQ03_17345 PF13361 UvrD-like helicase C-terminal domain LTQ03_17345 PF12462 DNA helicase IV / RNA helicase N terminal LTQ03_17345 PF00580 UvrD/REP helicase N-terminal domain LTQ03_17350 PF12805 FUSC-like inner membrane protein yccS LTQ03_17370 PF03466 LysR substrate binding domain LTQ03_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17375 PF04055 Radical SAM superfamily LTQ03_17380 PF11230 Protein of unknown function (DUF3029) LTQ03_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17390 PF03466 LysR substrate binding domain LTQ03_17405 PF00892 EamA-like transporter family LTQ03_17410 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_17420 PF00465 Iron-containing alcohol dehydrogenase LTQ03_17465 PF02525 Flavodoxin-like fold LTQ03_17470 PF00999 Sodium/hydrogen exchanger family LTQ03_17470 PF02254 TrkA-N domain LTQ03_17485 PF00107 Zinc-binding dehydrogenase LTQ03_17485 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_17490 PF00155 Aminotransferase class I and II LTQ03_17495 PF00563 EAL domain LTQ03_17495 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_17495 PF03707 Bacterial signalling protein N terminal repeat LTQ03_17510 PF03466 LysR substrate binding domain LTQ03_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_17540 PF01966 HD domain LTQ03_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17550 PF03466 LysR substrate binding domain LTQ03_17555 PF01906 Putative heavy-metal-binding LTQ03_17560 PF01551 Peptidase family M23 LTQ03_17560 PF08525 Opacity-associated protein A N-terminal motif LTQ03_17560 PF01476 LysM domain LTQ03_17585 PF00664 ABC transporter transmembrane region LTQ03_17585 PF00005 ABC transporter LTQ03_17590 PF00664 ABC transporter transmembrane region LTQ03_17590 PF00005 ABC transporter LTQ03_17605 PF08264 Anticodon-binding domain of tRNA LTQ03_17605 PF00133 tRNA synthetases class I (I, L, M and V) LTQ03_17625 PF03313 Serine dehydratase alpha chain LTQ03_17625 PF03315 Serine dehydratase beta chain LTQ03_17630 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_17630 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_17630 PF01610 Transposase LTQ03_17635 PF00854 POT family LTQ03_17640 PF04954 Siderophore-interacting protein LTQ03_17640 PF08021 Siderophore-interacting FAD-binding domain LTQ03_17645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LTQ03_17645 PF00356 Bacterial regulatory proteins, lacI family LTQ03_17650 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LTQ03_17650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ03_17655 PF01202 Shikimate kinase LTQ03_17660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_17670 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_17680 PF00392 Bacterial regulatory proteins, gntR family LTQ03_17680 PF07702 UTRA domain LTQ03_17685 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_17690 PF00005 ABC transporter LTQ03_17695 PF01266 FAD dependent oxidoreductase LTQ03_17705 PF00266 Aminotransferase class-V LTQ03_17710 PF00202 Aminotransferase class-III LTQ03_17715 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_17720 PF13488 Glycine zipper LTQ03_17720 PF00691 OmpA family LTQ03_17730 PF02566 OsmC-like protein LTQ03_17735 PF01625 Peptide methionine sulfoxide reductase LTQ03_17735 PF01641 SelR domain LTQ03_17740 PF02386 Cation transport protein LTQ03_17745 PF02080 TrkA-C domain LTQ03_17745 PF02254 TrkA-N domain LTQ03_17750 PF00924 Mechanosensitive ion channel LTQ03_17755 PF00483 Nucleotidyl transferase LTQ03_17755 PF01050 Mannose-6-phosphate isomerase LTQ03_17760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ03_17760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ03_17760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ03_17760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ03_17765 PF00793 DAHP synthetase I family LTQ03_17770 PF12843 Putative quorum-sensing-regulated virulence factor LTQ03_17780 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LTQ03_17780 PF18416 N-acetylglucosamine binding protein domain 2 LTQ03_17785 PF01040 UbiA prenyltransferase family LTQ03_17790 PF02628 Cytochrome oxidase assembly protein LTQ03_17810 PF00510 Cytochrome c oxidase subunit III LTQ03_17815 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LTQ03_17820 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ03_17825 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LTQ03_17825 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LTQ03_17830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ03_17830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ03_17830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ03_17830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ03_17835 PF01810 LysE type translocator LTQ03_17840 PF01557 Fumarylacetoacetate (FAA) hydrolase family LTQ03_17850 PF00012 Hsp70 protein LTQ03_17870 PF09308 LuxQ, periplasmic LTQ03_17870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_17870 PF00072 Response regulator receiver domain LTQ03_17870 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_17875 PF13407 Periplasmic binding protein domain LTQ03_17880 PF01541 GIY-YIG catalytic domain LTQ03_17885 PF04337 Protein of unknown function, DUF480 LTQ03_17895 PF04363 Protein of unknown function (DUF496) LTQ03_17910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ03_17910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_17910 PF01627 Hpt domain LTQ03_17910 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_17910 PF00072 Response regulator receiver domain LTQ03_17910 PF00672 HAMP domain LTQ03_17915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ03_17915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ03_17920 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_17920 PF00970 Oxidoreductase FAD-binding domain LTQ03_17920 PF00175 Oxidoreductase NAD-binding domain LTQ03_17925 PF03063 Prismane/CO dehydrogenase family LTQ03_17940 PF01810 LysE type translocator LTQ03_17945 PF03466 LysR substrate binding domain LTQ03_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_17955 PF13520 Amino acid permease LTQ03_17960 PF00155 Aminotransferase class I and II LTQ03_17960 PF00392 Bacterial regulatory proteins, gntR family LTQ03_17970 PF03253 Urea transporter LTQ03_17975 PF12833 Helix-turn-helix domain LTQ03_17975 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ03_17990 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LTQ03_17995 PF07969 Amidohydrolase family LTQ03_18000 PF00313 'Cold-shock' DNA-binding domain LTQ03_18005 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_18020 PF00270 DEAD/DEAH box helicase LTQ03_18020 PF00271 Helicase conserved C-terminal domain LTQ03_18025 PF00563 EAL domain LTQ03_18025 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_18025 PF03707 Bacterial signalling protein N terminal repeat LTQ03_18040 PF00672 HAMP domain LTQ03_18040 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_18045 PF00072 Response regulator receiver domain LTQ03_18045 PF00486 Transcriptional regulatory protein, C terminal LTQ03_18050 PF00873 AcrB/AcrD/AcrF family LTQ03_18060 PF02321 Outer membrane efflux protein LTQ03_18070 PF07670 Nucleoside recognition LTQ03_18070 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ03_18070 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ03_18080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_18085 PF03611 PTS system sugar-specific permease component LTQ03_18090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_18095 PF01966 HD domain LTQ03_18100 PF13302 Acetyltransferase (GNAT) domain LTQ03_18105 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_18105 PF00672 HAMP domain LTQ03_18105 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ03_18110 PF00072 Response regulator receiver domain LTQ03_18110 PF00486 Transcriptional regulatory protein, C terminal LTQ03_18115 PF00563 EAL domain LTQ03_18115 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_18115 PF13426 PAS domain LTQ03_18125 PF00563 EAL domain LTQ03_18125 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_18125 PF08447 PAS fold LTQ03_18125 PF08448 PAS fold LTQ03_18135 PF00005 ABC transporter LTQ03_18155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ03_18155 PF01872 RibD C-terminal domain LTQ03_18165 PF00849 RNA pseudouridylate synthase LTQ03_18180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_18180 PF00672 HAMP domain LTQ03_18185 PF07690 Major Facilitator Superfamily LTQ03_18195 PF12833 Helix-turn-helix domain LTQ03_18200 PF02311 AraC-like ligand binding domain LTQ03_18200 PF12833 Helix-turn-helix domain LTQ03_18205 PF00857 Isochorismatase family LTQ03_18215 PF01274 Malate synthase LTQ03_18220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18220 PF03466 LysR substrate binding domain LTQ03_18225 PF00463 Isocitrate lyase family LTQ03_18240 PF01752 Collagenase LTQ03_18240 PF08453 Peptidase family M9 N-terminal LTQ03_18240 PF04151 Bacterial pre-peptidase C-terminal domain LTQ03_18245 PF17327 Acyl homoserine lactone synthase LTQ03_18250 PF00072 Response regulator receiver domain LTQ03_18250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_18255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18255 PF03466 LysR substrate binding domain LTQ03_18270 PF01609 Transposase DDE domain LTQ03_18270 PF13006 Insertion element 4 transposase N-terminal LTQ03_18285 PF01116 Fructose-bisphosphate aldolase class-II LTQ03_18295 PF00294 pfkB family carbohydrate kinase LTQ03_18300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ03_18300 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LTQ03_18305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_18305 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ03_18305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_18310 PF01261 Xylose isomerase-like TIM barrel LTQ03_18315 PF00083 Sugar (and other) transporter LTQ03_18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18320 PF03466 LysR substrate binding domain LTQ03_18330 PF12706 Beta-lactamase superfamily domain LTQ03_18340 PF07969 Amidohydrolase family LTQ03_18345 PF00005 ABC transporter LTQ03_18350 PF00005 ABC transporter LTQ03_18355 PF06007 Phosphonate metabolism protein PhnJ LTQ03_18360 PF05861 Bacterial phosphonate metabolism protein (PhnI) LTQ03_18365 PF05845 Bacterial phosphonate metabolism protein (PhnH) LTQ03_18370 PF06754 Phosphonate metabolism protein PhnG LTQ03_18375 PF00392 Bacterial regulatory proteins, gntR family LTQ03_18375 PF07702 UTRA domain LTQ03_18380 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_18390 PF00005 ABC transporter LTQ03_18395 PF13309 HTH domain LTQ03_18395 PF08348 YheO-like PAS domain LTQ03_18400 PF01042 Endoribonuclease L-PSP LTQ03_18405 PF00375 Sodium:dicarboxylate symporter family LTQ03_18410 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_18410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ03_18515 PF04013 Putative SAM-dependent RNA methyltransferase LTQ03_18535 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LTQ03_18575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LTQ03_18585 PF03466 LysR substrate binding domain LTQ03_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18590 PF13460 NAD(P)H-binding LTQ03_18605 PF01638 HxlR-like helix-turn-helix LTQ03_18610 PF03466 LysR substrate binding domain LTQ03_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18615 PF00106 short chain dehydrogenase LTQ03_18625 PF03922 OmpW family LTQ03_18630 PF00483 Nucleotidyl transferase LTQ03_18635 PF03606 C4-dicarboxylate anaerobic carrier LTQ03_18660 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_18665 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_18670 PF00005 ABC transporter LTQ03_18685 PF00072 Response regulator receiver domain LTQ03_18685 PF02954 Bacterial regulatory protein, Fis family LTQ03_18685 PF00158 Sigma-54 interaction domain LTQ03_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_18690 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_18690 PF02743 Cache domain LTQ03_18695 PF13378 Enolase C-terminal domain-like LTQ03_18695 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LTQ03_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18705 PF03466 LysR substrate binding domain LTQ03_18715 PF02903 Alpha amylase, N-terminal ig-like domain LTQ03_18715 PF00128 Alpha amylase, catalytic domain LTQ03_18725 PF17200 Single Cache domain 2 LTQ03_18725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_18725 PF00672 HAMP domain LTQ03_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18735 PF03466 LysR substrate binding domain LTQ03_18745 PF02743 Cache domain LTQ03_18745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_18745 PF00672 HAMP domain LTQ03_18760 PF00155 Aminotransferase class I and II LTQ03_18760 PF00392 Bacterial regulatory proteins, gntR family LTQ03_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18770 PF03466 LysR substrate binding domain LTQ03_18775 PF07690 Major Facilitator Superfamily LTQ03_18780 PF03222 Tryptophan/tyrosine permease family LTQ03_18785 PF01047 MarR family LTQ03_18790 PF02566 OsmC-like protein LTQ03_18800 PF00171 Aldehyde dehydrogenase family LTQ03_18810 PF12729 Four helix bundle sensory module for signal transduction LTQ03_18810 PF00672 HAMP domain LTQ03_18810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_18830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_18840 PF00474 Sodium:solute symporter family LTQ03_18845 PF12833 Helix-turn-helix domain LTQ03_18850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_18850 PF02378 Phosphotransferase system, EIIC LTQ03_18850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_18855 PF01238 Phosphomannose isomerase type I LTQ03_18860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_18860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_18870 PF03707 Bacterial signalling protein N terminal repeat LTQ03_18870 PF00563 EAL domain LTQ03_18870 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_18880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_18885 PF00246 Zinc carboxypeptidase LTQ03_18890 PF01757 Acyltransferase family LTQ03_18905 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_18905 PF00107 Zinc-binding dehydrogenase LTQ03_18910 PF00756 Putative esterase LTQ03_18930 PF00171 Aldehyde dehydrogenase family LTQ03_18935 PF00158 Sigma-54 interaction domain LTQ03_18935 PF02954 Bacterial regulatory protein, Fis family LTQ03_18935 PF01590 GAF domain LTQ03_18940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_18940 PF00672 HAMP domain LTQ03_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_18945 PF03466 LysR substrate binding domain LTQ03_18965 PF00970 Oxidoreductase FAD-binding domain LTQ03_18965 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_18965 PF00175 Oxidoreductase NAD-binding domain LTQ03_18980 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LTQ03_18985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LTQ03_18995 PF03605 Anaerobic c4-dicarboxylate membrane transporter LTQ03_19000 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_19005 PF01966 HD domain LTQ03_19025 PF00941 FAD binding domain in molybdopterin dehydrogenase LTQ03_19025 PF03450 CO dehydrogenase flavoprotein C-terminal domain LTQ03_19030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LTQ03_19030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LTQ03_19040 PF01979 Amidohydrolase family LTQ03_19050 PF02627 Carboxymuconolactone decarboxylase family LTQ03_19055 PF13411 MerR HTH family regulatory protein LTQ03_19070 PF00083 Sugar (and other) transporter LTQ03_19070 PF07690 Major Facilitator Superfamily LTQ03_19080 PF04229 GrpB protein LTQ03_19105 PF04115 Ureidoglycolate lyase LTQ03_19110 PF03561 Allantoicase repeat LTQ03_19115 PF01014 Uricase LTQ03_19115 PF09349 OHCU decarboxylase LTQ03_19125 PF00576 HIUase/Transthyretin family LTQ03_19130 PF00860 Permease family LTQ03_19135 PF00860 Permease family LTQ03_19140 PF01979 Amidohydrolase family LTQ03_19155 PF01979 Amidohydrolase family LTQ03_19165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_19165 PF00672 HAMP domain LTQ03_19165 PF02743 Cache domain LTQ03_19170 PF00563 EAL domain LTQ03_19170 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_19170 PF10442 FIST C domain LTQ03_19170 PF08495 FIST N domain LTQ03_19175 PF01979 Amidohydrolase family LTQ03_19180 PF00873 AcrB/AcrD/AcrF family LTQ03_19190 PF00486 Transcriptional regulatory protein, C terminal LTQ03_19190 PF00072 Response regulator receiver domain LTQ03_19195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_19195 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_19200 PF00202 Aminotransferase class-III LTQ03_19205 PF00171 Aldehyde dehydrogenase family LTQ03_19210 PF04371 Porphyromonas-type peptidyl-arginine deiminase LTQ03_19215 PF00795 Carbon-nitrogen hydrolase LTQ03_19220 PF01266 FAD dependent oxidoreductase LTQ03_19225 PF00171 Aldehyde dehydrogenase family LTQ03_19230 PF01381 Helix-turn-helix LTQ03_19230 PF07883 Cupin domain LTQ03_19235 PF07722 Peptidase C26 LTQ03_19240 PF00120 Glutamine synthetase, catalytic domain LTQ03_19245 PF03553 Na+/H+ antiporter family LTQ03_19250 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_19250 PF01610 Transposase LTQ03_19250 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_19260 PF13660 Domain of unknown function (DUF4147) LTQ03_19260 PF05161 MOFRL family LTQ03_19265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ03_19265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ03_19270 PF01261 Xylose isomerase-like TIM barrel LTQ03_19275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_19275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_19275 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ03_19280 PF01274 Malate synthase LTQ03_19290 PF07681 DoxX LTQ03_19295 PF01047 MarR family LTQ03_19320 PF03466 LysR substrate binding domain LTQ03_19320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_19325 PF00892 EamA-like transporter family LTQ03_19345 PF12945 Flagellar protein YcgR LTQ03_19345 PF07238 PilZ domain LTQ03_19350 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ03_19350 PF13654 AAA domain LTQ03_19360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_19360 PF00005 ABC transporter LTQ03_19370 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LTQ03_19390 PF00356 Bacterial regulatory proteins, lacI family LTQ03_19400 PF01263 Aldose 1-epimerase LTQ03_19405 PF06165 Glycosyltransferase family 36 LTQ03_19405 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LTQ03_19410 PF17912 MalK OB fold domain LTQ03_19410 PF00005 ABC transporter LTQ03_19410 PF03459 TOBE domain LTQ03_19415 PF00232 Glycosyl hydrolase family 1 LTQ03_19420 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_19425 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_19435 PF00356 Bacterial regulatory proteins, lacI family LTQ03_19440 PF00672 HAMP domain LTQ03_19440 PF02743 Cache domain LTQ03_19440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_19455 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LTQ03_19455 PF00326 Prolyl oligopeptidase family LTQ03_19460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_19460 PF03466 LysR substrate binding domain LTQ03_19465 PF02652 L-lactate permease LTQ03_19470 PF01070 FMN-dependent dehydrogenase LTQ03_19485 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_19490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_19495 PF00005 ABC transporter LTQ03_19500 PF00005 ABC transporter LTQ03_19500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_19505 PF01554 MatE LTQ03_19510 PF12833 Helix-turn-helix domain LTQ03_19510 PF01497 Periplasmic binding protein LTQ03_19515 PF00155 Aminotransferase class I and II LTQ03_19530 PF00581 Rhodanese-like domain LTQ03_19530 PF17773 UPF0176 acylphosphatase like domain LTQ03_19555 PF01238 Phosphomannose isomerase type I LTQ03_19560 PF07690 Major Facilitator Superfamily LTQ03_19565 PF05231 MASE1 LTQ03_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_19565 PF07730 Histidine kinase LTQ03_19570 PF00072 Response regulator receiver domain LTQ03_19570 PF00196 Bacterial regulatory proteins, luxR family LTQ03_19575 PF07690 Major Facilitator Superfamily LTQ03_19585 PF03707 Bacterial signalling protein N terminal repeat LTQ03_19585 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_19585 PF00563 EAL domain LTQ03_19595 PF02678 Pirin LTQ03_19595 PF05726 Pirin C-terminal cupin domain LTQ03_19600 PF06865 Pyrimidine/purine nucleoside phosphorylase LTQ03_19610 PF00704 Glycosyl hydrolases family 18 LTQ03_19610 PF08329 Chitinase A, N-terminal domain LTQ03_19615 PF12697 Alpha/beta hydrolase family LTQ03_19640 PF12852 Cupin LTQ03_19640 PF12833 Helix-turn-helix domain LTQ03_19660 PF01124 MAPEG family LTQ03_19665 PF07670 Nucleoside recognition LTQ03_19670 PF07670 Nucleoside recognition LTQ03_19680 PF03600 Citrate transporter LTQ03_19690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ03_19690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LTQ03_19695 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ03_19695 PF06029 AlkA N-terminal domain LTQ03_19705 PF03466 LysR substrate binding domain LTQ03_19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_19715 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LTQ03_19725 PF05068 Mannitol repressor LTQ03_19730 PF01232 Mannitol dehydrogenase Rossmann domain LTQ03_19730 PF08125 Mannitol dehydrogenase C-terminal domain LTQ03_19735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_19735 PF02378 Phosphotransferase system, EIIC LTQ03_19735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_19745 PF00881 Nitroreductase family LTQ03_19750 PF00258 Flavodoxin LTQ03_19750 PF00753 Metallo-beta-lactamase superfamily LTQ03_19750 PF00301 Rubredoxin LTQ03_19755 PF18113 Rubredoxin binding C-terminal domain LTQ03_19755 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_19760 PF03616 Sodium/glutamate symporter LTQ03_19765 PF10928 Protein of unknown function (DUF2810) LTQ03_19775 PF14552 Tautomerase enzyme LTQ03_19785 PF04542 Sigma-70 region 2 LTQ03_19785 PF04545 Sigma-70, region 4 LTQ03_19790 PF12973 ChrR Cupin-like domain LTQ03_19800 PF03441 FAD binding domain of DNA photolyase LTQ03_19800 PF00875 DNA photolyase LTQ03_19810 PF00106 short chain dehydrogenase LTQ03_19815 PF01593 Flavin containing amine oxidoreductase LTQ03_19850 PF00106 short chain dehydrogenase LTQ03_19855 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LTQ03_19865 PF00155 Aminotransferase class I and II LTQ03_19880 PF03466 LysR substrate binding domain LTQ03_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_19890 PF07690 Major Facilitator Superfamily LTQ03_19895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ03_19910 PF07549 SecD/SecF GG Motif LTQ03_19910 PF02355 Protein export membrane protein LTQ03_19915 PF07549 SecD/SecF GG Motif LTQ03_19915 PF13721 SecD export protein N-terminal TM region LTQ03_19915 PF02355 Protein export membrane protein LTQ03_19925 PF00675 Insulinase (Peptidase family M16) LTQ03_19925 PF05193 Peptidase M16 inactive domain LTQ03_19930 PF05193 Peptidase M16 inactive domain LTQ03_19930 PF00675 Insulinase (Peptidase family M16) LTQ03_19935 PF00072 Response regulator receiver domain LTQ03_19935 PF04397 LytTr DNA-binding domain LTQ03_19940 PF07694 5TMR of 5TMR-LYT LTQ03_19940 PF06580 Histidine kinase LTQ03_19955 PF12704 MacB-like periplasmic core domain LTQ03_19955 PF02687 FtsX-like permease family LTQ03_19960 PF00005 ABC transporter LTQ03_19975 PF03466 LysR substrate binding domain LTQ03_19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_19985 PF00144 Beta-lactamase LTQ03_19995 PF07687 Peptidase dimerisation domain LTQ03_19995 PF01546 Peptidase family M20/M25/M40 LTQ03_20000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ03_20000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ03_20015 PF01709 Transcriptional regulator LTQ03_20025 PF01329 Pterin 4 alpha carbinolamine dehydratase LTQ03_20030 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LTQ03_20035 PF00501 AMP-binding enzyme LTQ03_20035 PF13193 AMP-binding enzyme C-terminal domain LTQ03_20045 PF14497 Glutathione S-transferase, C-terminal domain LTQ03_20045 PF02798 Glutathione S-transferase, N-terminal domain LTQ03_20055 PF04209 homogentisate 1,2-dioxygenase LTQ03_20060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_20075 PF00005 ABC transporter LTQ03_20075 PF08402 TOBE domain LTQ03_20100 PF07702 UTRA domain LTQ03_20100 PF00392 Bacterial regulatory proteins, gntR family LTQ03_20105 PF01627 Hpt domain LTQ03_20105 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_20105 PF00072 Response regulator receiver domain LTQ03_20105 PF17149 Periplasmic sensor domain found in signal transduction proteins LTQ03_20105 PF00672 HAMP domain LTQ03_20105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_20115 PF00925 GTP cyclohydrolase II LTQ03_20115 PF08719 Domain of unknown function (DUF1768) LTQ03_20125 PF00005 ABC transporter LTQ03_20125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_20130 PF00005 ABC transporter LTQ03_20130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ03_20145 PF18607 ParA helix turn helix domain LTQ03_20145 PF13614 AAA domain LTQ03_20150 PF02195 ParB-like nuclease domain LTQ03_20150 PF08775 ParB family LTQ03_20155 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_20155 PF01610 Transposase LTQ03_20155 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_20160 PF05127 Helicase LTQ03_20160 PF13718 GNAT acetyltransferase 2 LTQ03_20170 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_20170 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_20170 PF01610 Transposase LTQ03_20180 PF00664 ABC transporter transmembrane region LTQ03_20180 PF00005 ABC transporter LTQ03_20180 PF03412 Peptidase C39 family LTQ03_20195 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_20200 PF02954 Bacterial regulatory protein, Fis family LTQ03_20200 PF00072 Response regulator receiver domain LTQ03_20200 PF00158 Sigma-54 interaction domain LTQ03_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_20205 PF02743 Cache domain LTQ03_20205 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_20210 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LTQ03_20210 PF01243 Pyridoxamine 5'-phosphate oxidase LTQ03_20215 PF00196 Bacterial regulatory proteins, luxR family LTQ03_20215 PF00072 Response regulator receiver domain LTQ03_20220 PF12833 Helix-turn-helix domain LTQ03_20225 PF00171 Aldehyde dehydrogenase family LTQ03_20225 PF01619 Proline dehydrogenase LTQ03_20225 PF14850 DNA-binding domain of Proline dehydrogenase LTQ03_20225 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LTQ03_20235 PF00474 Sodium:solute symporter family LTQ03_20260 PF01037 Lrp/AsnC ligand binding domain LTQ03_20265 PF04286 Protein of unknown function (DUF445) LTQ03_20270 PF00664 ABC transporter transmembrane region LTQ03_20270 PF00005 ABC transporter LTQ03_20300 PF01544 CorA-like Mg2+ transporter protein LTQ03_20305 PF08019 Phosphoethanolamine transferase EptA/EptB LTQ03_20305 PF00884 Sulfatase LTQ03_20325 PF02685 Glucokinase LTQ03_20325 PF01418 Helix-turn-helix domain, rpiR family LTQ03_20325 PF01380 SIS domain LTQ03_20335 PF07969 Amidohydrolase family LTQ03_20345 PF00474 Sodium:solute symporter family LTQ03_20350 PF00294 pfkB family carbohydrate kinase LTQ03_20355 PF01081 KDPG and KHG aldolase LTQ03_20360 PF02838 Glycosyl hydrolase family 20, domain 2 LTQ03_20360 PF00728 Glycosyl hydrolase family 20, catalytic domain LTQ03_20365 PF02743 Cache domain LTQ03_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_20365 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_20370 PF00072 Response regulator receiver domain LTQ03_20370 PF02954 Bacterial regulatory protein, Fis family LTQ03_20370 PF00158 Sigma-54 interaction domain LTQ03_20385 PF01266 FAD dependent oxidoreductase LTQ03_20390 PF04151 Bacterial pre-peptidase C-terminal domain LTQ03_20390 PF04389 Peptidase family M28 LTQ03_20395 PF02868 Thermolysin metallopeptidase, alpha-helical domain LTQ03_20395 PF04151 Bacterial pre-peptidase C-terminal domain LTQ03_20395 PF03413 Peptidase propeptide and YPEB domain LTQ03_20395 PF07504 Fungalysin/Thermolysin Propeptide Motif LTQ03_20395 PF01447 Thermolysin metallopeptidase, catalytic domain LTQ03_20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_20405 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_20405 PF00672 HAMP domain LTQ03_20410 PF00072 Response regulator receiver domain LTQ03_20410 PF00486 Transcriptional regulatory protein, C terminal LTQ03_20420 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_20425 PF01037 Lrp/AsnC ligand binding domain LTQ03_20435 PF07687 Peptidase dimerisation domain LTQ03_20435 PF01546 Peptidase family M20/M25/M40 LTQ03_20440 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_20450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_20455 PF00557 Metallopeptidase family M24 LTQ03_20455 PF01321 Creatinase/Prolidase N-terminal domain LTQ03_20460 PF13977 BetI-type transcriptional repressor, C-terminal LTQ03_20460 PF00440 Bacterial regulatory proteins, tetR family LTQ03_20465 PF00171 Aldehyde dehydrogenase family LTQ03_20470 PF00732 GMC oxidoreductase LTQ03_20470 PF05199 GMC oxidoreductase LTQ03_20475 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LTQ03_20480 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_20485 PF00005 ABC transporter LTQ03_20485 PF00571 CBS domain LTQ03_20490 PF01047 MarR family LTQ03_20495 PF00171 Aldehyde dehydrogenase family LTQ03_20505 PF00465 Iron-containing alcohol dehydrogenase LTQ03_20515 PF00884 Sulfatase LTQ03_20520 PF13186 Iron-sulfur cluster-binding domain LTQ03_20520 PF04055 Radical SAM superfamily LTQ03_20525 PF00440 Bacterial regulatory proteins, tetR family LTQ03_20525 PF16925 Tetracyclin repressor-like, C-terminal domain LTQ03_20535 PF13673 Acetyltransferase (GNAT) domain LTQ03_20540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_20545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_20545 PF02378 Phosphotransferase system, EIIC LTQ03_20550 PF00107 Zinc-binding dehydrogenase LTQ03_20550 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_20585 PF11975 Family 4 glycosyl hydrolase C-terminal domain LTQ03_20585 PF02056 Family 4 glycosyl hydrolase LTQ03_20590 PF12833 Helix-turn-helix domain LTQ03_20605 PF02600 Disulfide bond formation protein DsbB LTQ03_20610 PF01081 KDPG and KHG aldolase LTQ03_20620 PF01204 Trehalase LTQ03_20635 PF12833 Helix-turn-helix domain LTQ03_20635 PF17853 GGDEF-like domain LTQ03_20640 PF12464 Maltose acetyltransferase LTQ03_20640 PF14602 Hexapeptide repeat of succinyl-transferase LTQ03_20645 PF00962 Adenosine/AMP deaminase LTQ03_20650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_20650 PF03466 LysR substrate binding domain LTQ03_20665 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_20665 PF16197 Ketoacyl-synthetase C-terminal extension LTQ03_20665 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ03_20665 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ03_20665 PF08659 KR domain LTQ03_20665 PF00550 Phosphopantetheine attachment site LTQ03_20665 PF14765 Polyketide synthase dehydratase LTQ03_20665 PF00698 Acyl transferase domain LTQ03_20690 PF02219 Methylenetetrahydrofolate reductase LTQ03_20690 PF02574 Homocysteine S-methyltransferase LTQ03_20695 PF00589 Phage integrase family LTQ03_20695 PF13495 Phage integrase, N-terminal SAM-like domain LTQ03_20715 PF01548 Transposase LTQ03_20715 PF02371 Transposase IS116/IS110/IS902 family LTQ03_20725 PF01548 Transposase LTQ03_20725 PF02371 Transposase IS116/IS110/IS902 family LTQ03_20730 PF00186 Dihydrofolate reductase LTQ03_20750 PF02371 Transposase IS116/IS110/IS902 family LTQ03_20750 PF01548 Transposase LTQ03_20770 PF01548 Transposase LTQ03_20770 PF02371 Transposase IS116/IS110/IS902 family LTQ03_20805 PF01980 tRNA-methyltransferase O LTQ03_20825 PF00106 short chain dehydrogenase LTQ03_20830 PF00378 Enoyl-CoA hydratase/isomerase LTQ03_20835 PF01554 MatE LTQ03_20840 PF03466 LysR substrate binding domain LTQ03_20840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_20845 PF14863 Alkyl sulfatase dimerisation LTQ03_20845 PF14864 Alkyl sulfatase C-terminal LTQ03_20845 PF00753 Metallo-beta-lactamase superfamily LTQ03_20850 PF03466 LysR substrate binding domain LTQ03_20850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_20860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ03_20875 PF02872 5'-nucleotidase, C-terminal domain LTQ03_20875 PF00149 Calcineurin-like phosphoesterase LTQ03_20880 PF00232 Glycosyl hydrolase family 1 LTQ03_20885 PF00356 Bacterial regulatory proteins, lacI family LTQ03_20890 PF14602 Hexapeptide repeat of succinyl-transferase LTQ03_20890 PF12464 Maltose acetyltransferase LTQ03_20895 PF07690 Major Facilitator Superfamily LTQ03_20900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_20900 PF03466 LysR substrate binding domain LTQ03_20905 PF13186 Iron-sulfur cluster-binding domain LTQ03_20905 PF04055 Radical SAM superfamily LTQ03_20910 PF00884 Sulfatase LTQ03_20910 PF12411 Choline sulfatase enzyme C terminal LTQ03_20925 PF13091 PLD-like domain LTQ03_20930 PF00881 Nitroreductase family LTQ03_20935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ03_20935 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_20945 PF01177 Asp/Glu/Hydantoin racemase LTQ03_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_20955 PF03466 LysR substrate binding domain LTQ03_20960 PF00106 short chain dehydrogenase LTQ03_20965 PF01266 FAD dependent oxidoreductase LTQ03_20965 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LTQ03_20970 PF00455 DeoR C terminal sensor domain LTQ03_20970 PF08220 DeoR-like helix-turn-helix domain LTQ03_20975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LTQ03_20975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LTQ03_20980 PF00230 Major intrinsic protein LTQ03_20985 PF00072 Response regulator receiver domain LTQ03_20985 PF00486 Transcriptional regulatory protein, C terminal LTQ03_20990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_20990 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_21000 PF04303 PrpF protein LTQ03_21010 PF01970 Tripartite tricarboxylate transporter TctA family LTQ03_21025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_21025 PF03466 LysR substrate binding domain LTQ03_21030 PF01758 Sodium Bile acid symporter family LTQ03_21045 PF00440 Bacterial regulatory proteins, tetR family LTQ03_21065 PF03466 LysR substrate binding domain LTQ03_21065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_21075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ03_21075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LTQ03_21100 PF00455 DeoR C terminal sensor domain LTQ03_21100 PF08220 DeoR-like helix-turn-helix domain LTQ03_21105 PF03611 PTS system sugar-specific permease component LTQ03_21110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_21115 PF00596 Class II Aldolase and Adducin N-terminal domain LTQ03_21125 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LTQ03_21130 PF01261 Xylose isomerase-like TIM barrel LTQ03_21140 PF13419 Haloacid dehalogenase-like hydrolase LTQ03_21145 PF00834 Ribulose-phosphate 3 epimerase family LTQ03_21155 PF07690 Major Facilitator Superfamily LTQ03_21165 PF01261 Xylose isomerase-like TIM barrel LTQ03_21170 PF09339 IclR helix-turn-helix domain LTQ03_21170 PF01614 Bacterial transcriptional regulator LTQ03_21175 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LTQ03_21180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LTQ03_21180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LTQ03_21195 PF00596 Class II Aldolase and Adducin N-terminal domain LTQ03_21200 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_21205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_21210 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_21215 PF02615 Malate/L-lactate dehydrogenase LTQ03_21220 PF02595 Glycerate kinase family LTQ03_21225 PF00199 Catalase LTQ03_21225 PF06628 Catalase-related immune-responsive LTQ03_21230 PF01734 Patatin-like phospholipase LTQ03_21235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ03_21235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ03_21245 PF00175 Oxidoreductase NAD-binding domain LTQ03_21245 PF00970 Oxidoreductase FAD-binding domain LTQ03_21250 PF01553 Acyltransferase LTQ03_21255 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LTQ03_21265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ03_21265 PF00128 Alpha amylase, catalytic domain LTQ03_21290 PF01547 Bacterial extracellular solute-binding protein LTQ03_21295 PF00128 Alpha amylase, catalytic domain LTQ03_21295 PF16657 Maltogenic Amylase, C-terminal domain LTQ03_21300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_21300 PF03466 LysR substrate binding domain LTQ03_21305 PF16657 Maltogenic Amylase, C-terminal domain LTQ03_21305 PF00128 Alpha amylase, catalytic domain LTQ03_21305 PF02903 Alpha amylase, N-terminal ig-like domain LTQ03_21310 PF17967 Pullulanase N2 domain LTQ03_21310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ03_21310 PF11852 Domain of unknown function (DUF3372) LTQ03_21310 PF03714 Bacterial pullanase-associated domain LTQ03_21310 PF18494 Pullulanase Ins domain LTQ03_21320 PF01810 LysE type translocator LTQ03_21325 PF01037 Lrp/AsnC ligand binding domain LTQ03_21330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_21330 PF03466 LysR substrate binding domain LTQ03_21335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ03_21345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_21345 PF01568 Molydopterin dinucleotide binding domain LTQ03_21345 PF00384 Molybdopterin oxidoreductase LTQ03_21350 PF03916 Polysulphide reductase, NrfD LTQ03_21355 PF13247 4Fe-4S dicluster domain LTQ03_21360 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_21365 PF00072 Response regulator receiver domain LTQ03_21365 PF00196 Bacterial regulatory proteins, luxR family LTQ03_21375 PF00375 Sodium:dicarboxylate symporter family LTQ03_21380 PF03193 RsgA GTPase LTQ03_21390 PF02630 SCO1/SenC LTQ03_21405 PF00196 Bacterial regulatory proteins, luxR family LTQ03_21405 PF17874 MalT-like TPR region LTQ03_21410 PF00343 Carbohydrate phosphorylase LTQ03_21415 PF02446 4-alpha-glucanotransferase LTQ03_21420 PF00128 Alpha amylase, catalytic domain LTQ03_21420 PF02806 Alpha amylase, C-terminal all-beta domain LTQ03_21420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ03_21435 PF00005 ABC transporter LTQ03_21435 PF12558 ATP-binding cassette cobalt transporter LTQ03_21440 PF07155 ECF-type riboflavin transporter, S component LTQ03_21445 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_21445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_21450 PF11742 Protein of unknown function (DUF3302) LTQ03_21460 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_21475 PF01048 Phosphorylase superfamily LTQ03_21480 PF17969 L,D-transpeptidase C-terminal domain LTQ03_21480 PF01476 LysM domain LTQ03_21480 PF03734 L,D-transpeptidase catalytic domain LTQ03_21490 PF00271 Helicase conserved C-terminal domain LTQ03_21490 PF00270 DEAD/DEAH box helicase LTQ03_21495 PF00657 GDSL-like Lipase/Acylhydrolase LTQ03_21500 PF00561 alpha/beta hydrolase fold LTQ03_21505 PF03280 Proteobacterial lipase chaperone protein LTQ03_21510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LTQ03_21510 PF00326 Prolyl oligopeptidase family LTQ03_21515 PF07715 TonB-dependent Receptor Plug Domain LTQ03_21515 PF00593 TonB dependent receptor LTQ03_21535 PF17200 Single Cache domain 2 LTQ03_21535 PF00672 HAMP domain LTQ03_21535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_21540 PF12849 PBP superfamily domain LTQ03_21545 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21550 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21555 PF00005 ABC transporter LTQ03_21560 PF17151 Periplasmic sensor domain LTQ03_21560 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_21570 PF00092 von Willebrand factor type A domain LTQ03_21570 PF07584 Aerotolerance regulator N-terminal LTQ03_21575 PF07584 Aerotolerance regulator N-terminal LTQ03_21575 PF00092 von Willebrand factor type A domain LTQ03_21585 PF01882 Protein of unknown function DUF58 LTQ03_21590 PF07726 ATPase family associated with various cellular activities (AAA) LTQ03_21590 PF17863 AAA lid domain LTQ03_21595 PF02743 Cache domain LTQ03_21595 PF00672 HAMP domain LTQ03_21595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_21605 PF01610 Transposase LTQ03_21605 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_21605 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_21610 PF08402 TOBE domain LTQ03_21610 PF00005 ABC transporter LTQ03_21615 PF01547 Bacterial extracellular solute-binding protein LTQ03_21620 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21620 PF14785 Maltose transport system permease protein MalF P2 domain LTQ03_21625 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21640 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_21640 PF01610 Transposase LTQ03_21640 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_21645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_21680 PF00924 Mechanosensitive ion channel LTQ03_21685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_21685 PF03466 LysR substrate binding domain LTQ03_21700 PF01914 MarC family integral membrane protein LTQ03_21705 PF00571 CBS domain LTQ03_21705 PF01769 Divalent cation transporter LTQ03_21705 PF03448 MgtE intracellular N domain LTQ03_21715 PF01699 Sodium/calcium exchanger protein LTQ03_21720 PF07549 SecD/SecF GG Motif LTQ03_21720 PF02355 Protein export membrane protein LTQ03_21725 PF07549 SecD/SecF GG Motif LTQ03_21725 PF13721 SecD export protein N-terminal TM region LTQ03_21725 PF02355 Protein export membrane protein LTQ03_21730 PF04231 Endonuclease I LTQ03_21740 PF02687 FtsX-like permease family LTQ03_21740 PF12704 MacB-like periplasmic core domain LTQ03_21745 PF00005 ABC transporter LTQ03_21755 PF00005 ABC transporter LTQ03_21765 PF01032 FecCD transport family LTQ03_21780 PF02310 B12 binding domain LTQ03_21780 PF04055 Radical SAM superfamily LTQ03_21795 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_21795 PF00072 Response regulator receiver domain LTQ03_21820 PF01610 Transposase LTQ03_21820 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_21820 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_21830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ03_21830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LTQ03_21835 PF01418 Helix-turn-helix domain, rpiR family LTQ03_21835 PF01380 SIS domain LTQ03_21840 PF02653 Branched-chain amino acid transport system / permease component LTQ03_21845 PF00005 ABC transporter LTQ03_21850 PF13407 Periplasmic binding protein domain LTQ03_21855 PF00294 pfkB family carbohydrate kinase LTQ03_21860 PF00171 Aldehyde dehydrogenase family LTQ03_21865 PF01144 Coenzyme A transferase LTQ03_21870 PF01144 Coenzyme A transferase LTQ03_21875 PF02803 Thiolase, C-terminal domain LTQ03_21875 PF00108 Thiolase, N-terminal domain LTQ03_21890 PF01554 MatE LTQ03_21895 PF13006 Insertion element 4 transposase N-terminal LTQ03_21895 PF01609 Transposase DDE domain LTQ03_21900 PF00391 PEP-utilising enzyme, mobile domain LTQ03_21900 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ03_21900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LTQ03_21905 PF03618 Kinase/pyrophosphorylase LTQ03_21910 PF13417 Glutathione S-transferase, N-terminal domain LTQ03_21910 PF04399 Glutaredoxin 2, C terminal domain LTQ03_21920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ03_21940 PF03009 Glycerophosphoryl diester phosphodiesterase family LTQ03_21945 PF17912 MalK OB fold domain LTQ03_21945 PF00005 ABC transporter LTQ03_21950 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21955 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_21960 PF13416 Bacterial extracellular solute-binding protein LTQ03_21975 PF08443 RimK-like ATP-grasp domain LTQ03_21975 PF18030 RimK PreATP-grasp domain LTQ03_21980 PF08443 RimK-like ATP-grasp domain LTQ03_21980 PF18030 RimK PreATP-grasp domain LTQ03_21985 PF12793 Sugar transport-related sRNA regulator N-term LTQ03_21985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ03_21990 PF12706 Beta-lactamase superfamily domain LTQ03_22015 PF00171 Aldehyde dehydrogenase family LTQ03_22020 PF09339 IclR helix-turn-helix domain LTQ03_22020 PF01614 Bacterial transcriptional regulator LTQ03_22025 PF01515 Phosphate acetyl/butaryl transferase LTQ03_22030 PF01925 Sulfite exporter TauE/SafE LTQ03_22035 PF11775 Cobalamin biosynthesis protein CobT VWA domain LTQ03_22035 PF06213 Cobalamin biosynthesis protein CobT LTQ03_22040 PF07728 AAA domain (dynein-related subfamily) LTQ03_22040 PF12556 Cobaltochelatase CobS subunit N terminal LTQ03_22040 PF08406 CbbQ/NirQ/NorQ C-terminal LTQ03_22045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ03_22045 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ03_22045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ03_22060 PF01266 FAD dependent oxidoreductase LTQ03_22065 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ03_22070 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_22075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ03_22075 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ03_22090 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_22100 PF05661 Protein of unknown function (DUF808) LTQ03_22105 PF01979 Amidohydrolase family LTQ03_22115 PF03473 MOSC domain LTQ03_22115 PF03476 MOSC N-terminal beta barrel domain LTQ03_22115 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ03_22120 PF02540 NAD synthase LTQ03_22125 PF01467 Cytidylyltransferase-like LTQ03_22165 PF00005 ABC transporter LTQ03_22170 PF01032 FecCD transport family LTQ03_22180 PF02472 Biopolymer transport protein ExbD/TolR LTQ03_22185 PF01618 MotA/TolQ/ExbB proton channel family LTQ03_22190 PF03544 Gram-negative bacterial TonB protein C-terminal LTQ03_22195 PF04055 Radical SAM superfamily LTQ03_22200 PF06228 Haem utilisation ChuX/HutX LTQ03_22205 PF01243 Pyridoxamine 5'-phosphate oxidase LTQ03_22210 PF01923 Cobalamin adenosyltransferase LTQ03_22215 PF01584 CheW-like domain LTQ03_22215 PF00072 Response regulator receiver domain LTQ03_22225 PF00128 Alpha amylase, catalytic domain LTQ03_22230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_22230 PF02743 Cache domain LTQ03_22230 PF00672 HAMP domain LTQ03_22235 PF07670 Nucleoside recognition LTQ03_22260 PF01476 LysM domain LTQ03_22260 PF08525 Opacity-associated protein A N-terminal motif LTQ03_22260 PF01551 Peptidase family M23 LTQ03_22265 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_22265 PF08448 PAS fold LTQ03_22265 PF08447 PAS fold LTQ03_22265 PF00563 EAL domain LTQ03_22270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_22270 PF03466 LysR substrate binding domain LTQ03_22275 PF07690 Major Facilitator Superfamily LTQ03_22285 PF00462 Glutaredoxin LTQ03_22290 PF00892 EamA-like transporter family LTQ03_22295 PF13609 Gram-negative porin LTQ03_22310 PF00085 Thioredoxin LTQ03_22315 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ03_22315 PF11412 Disulphide bond corrector protein DsbC LTQ03_22330 PF00924 Mechanosensitive ion channel LTQ03_22330 PF05552 Conserved TM helix LTQ03_22340 PF00196 Bacterial regulatory proteins, luxR family LTQ03_22340 PF00072 Response regulator receiver domain LTQ03_22370 PF03412 Peptidase C39 family LTQ03_22370 PF00664 ABC transporter transmembrane region LTQ03_22370 PF00005 ABC transporter LTQ03_22380 PF02321 Outer membrane efflux protein LTQ03_22400 PF00248 Aldo/keto reductase family LTQ03_22410 PF03880 DbpA RNA binding domain LTQ03_22410 PF00270 DEAD/DEAH box helicase LTQ03_22410 PF00271 Helicase conserved C-terminal domain LTQ03_22425 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ03_22425 PF02811 PHP domain LTQ03_22425 PF00929 Exonuclease LTQ03_22425 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ03_22425 PF11490 DNA polymerase III polC-type N-terminus II LTQ03_22425 PF14579 Helix-hairpin-helix motif LTQ03_22435 PF00270 DEAD/DEAH box helicase LTQ03_22435 PF00271 Helicase conserved C-terminal domain LTQ03_22440 PF00881 Nitroreductase family LTQ03_22450 PF00037 4Fe-4S binding domain LTQ03_22450 PF11953 Domain of unknown function (DUF3470) LTQ03_22455 PF00588 SpoU rRNA Methylase family LTQ03_22455 PF08032 RNA 2'-O ribose methyltransferase substrate binding LTQ03_22460 PF00248 Aldo/keto reductase family LTQ03_22470 PF01546 Peptidase family M20/M25/M40 LTQ03_22470 PF07687 Peptidase dimerisation domain LTQ03_22485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ03_22490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_22495 PF00873 AcrB/AcrD/AcrF family LTQ03_22500 PF01575 MaoC like domain LTQ03_22505 PF12849 PBP superfamily domain LTQ03_22515 PF12833 Helix-turn-helix domain LTQ03_22520 PF17876 Cold shock domain LTQ03_22520 PF08206 Ribonuclease B OB domain LTQ03_22520 PF00575 S1 RNA binding domain LTQ03_22520 PF00773 RNB domain LTQ03_22525 PF00270 DEAD/DEAH box helicase LTQ03_22525 PF00271 Helicase conserved C-terminal domain LTQ03_22525 PF03880 DbpA RNA binding domain LTQ03_22530 PF00871 Acetokinase family LTQ03_22540 PF00291 Pyridoxal-phosphate dependent enzyme LTQ03_22540 PF00571 CBS domain LTQ03_22545 PF07883 Cupin domain LTQ03_22545 PF01381 Helix-turn-helix LTQ03_22550 PF03594 Benzoate membrane transport protein LTQ03_22575 PF00107 Zinc-binding dehydrogenase LTQ03_22575 PF08240 Alcohol dehydrogenase GroES-like domain LTQ03_22590 PF13593 SBF-like CPA transporter family (DUF4137) LTQ03_22595 PF01810 LysE type translocator LTQ03_22600 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_22600 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_22600 PF01610 Transposase LTQ03_22605 PF01610 Transposase LTQ03_22605 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LTQ03_22605 PF13542 Helix-turn-helix domain of transposase family ISL3 LTQ03_22620 PF00892 EamA-like transporter family LTQ03_22625 PF00128 Alpha amylase, catalytic domain LTQ03_22630 PF01494 FAD binding domain LTQ03_22635 PF03466 LysR substrate binding domain LTQ03_22635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_22640 PF01554 MatE LTQ03_22670 PF00478 IMP dehydrogenase / GMP reductase domain LTQ03_22675 PF00589 Phage integrase family LTQ03_22710 PF13417 Glutathione S-transferase, N-terminal domain LTQ03_22710 PF00043 Glutathione S-transferase, C-terminal domain LTQ03_22735 PF00892 EamA-like transporter family LTQ03_22740 PF08543 Phosphomethylpyrimidine kinase LTQ03_22745 PF00005 ABC transporter LTQ03_22750 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_22755 PF09084 NMT1/THI5 like LTQ03_22760 PF03070 TENA/THI-4/PQQC family LTQ03_22765 PF02110 Hydroxyethylthiazole kinase family LTQ03_22770 PF02743 Cache domain LTQ03_22770 PF00672 HAMP domain LTQ03_22770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_22775 PF02581 Thiamine monophosphate synthase LTQ03_22785 PF03466 LysR substrate binding domain LTQ03_22785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_22795 PF12833 Helix-turn-helix domain LTQ03_22795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ03_22800 PF01979 Amidohydrolase family LTQ03_22825 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_22825 PF07694 5TMR of 5TMR-LYT LTQ03_22835 PF13533 Biotin-lipoyl like LTQ03_22845 PF01594 AI-2E family transporter LTQ03_22875 PF01497 Periplasmic binding protein LTQ03_22880 PF01032 FecCD transport family LTQ03_22885 PF01032 FecCD transport family LTQ03_22890 PF00005 ABC transporter LTQ03_22895 PF00072 Response regulator receiver domain LTQ03_22900 PF01627 Hpt domain LTQ03_22900 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_22900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_22900 PF00672 HAMP domain LTQ03_22900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ03_22900 PF00072 Response regulator receiver domain LTQ03_22905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_22905 PF03466 LysR substrate binding domain LTQ03_22910 PF07690 Major Facilitator Superfamily LTQ03_22915 PF05547 Immune inhibitor A peptidase M6 LTQ03_22915 PF00801 PKD domain LTQ03_22930 PF01037 Lrp/AsnC ligand binding domain LTQ03_22935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_22935 PF08447 PAS fold LTQ03_22940 PF00456 Transketolase, thiamine diphosphate binding domain LTQ03_22940 PF02780 Transketolase, C-terminal domain LTQ03_22940 PF02779 Transketolase, pyrimidine binding domain LTQ03_22945 PF00923 Transaldolase/Fructose-6-phosphate aldolase LTQ03_22955 PF08329 Chitinase A, N-terminal domain LTQ03_22955 PF00704 Glycosyl hydrolases family 18 LTQ03_22960 PF00563 EAL domain LTQ03_22960 PF01590 GAF domain LTQ03_22960 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_22960 PF00360 Phytochrome region LTQ03_22965 PF00581 Rhodanese-like domain LTQ03_22985 PF00899 ThiF family LTQ03_22990 PF03453 MoeA N-terminal region (domain I and II) LTQ03_22990 PF03454 MoeA C-terminal region (domain IV) LTQ03_22990 PF00994 Probable molybdopterin binding domain LTQ03_22995 PF01227 GTP cyclohydrolase I LTQ03_23005 PF07152 YaeQ protein LTQ03_23010 PF00313 'Cold-shock' DNA-binding domain LTQ03_23015 PF07995 Glucose / Sorbosone dehydrogenase LTQ03_23020 PF07690 Major Facilitator Superfamily LTQ03_23025 PF00005 ABC transporter LTQ03_23035 PF12833 Helix-turn-helix domain LTQ03_23040 PF00593 TonB dependent receptor LTQ03_23040 PF07715 TonB-dependent Receptor Plug Domain LTQ03_23050 PF01032 FecCD transport family LTQ03_23055 PF00378 Enoyl-CoA hydratase/isomerase LTQ03_23070 PF00155 Aminotransferase class I and II LTQ03_23075 PF02080 TrkA-C domain LTQ03_23075 PF06826 Predicted Permease Membrane Region LTQ03_23085 PF13533 Biotin-lipoyl like LTQ03_23090 PF00873 AcrB/AcrD/AcrF family LTQ03_23100 PF02253 Phospholipase A1 LTQ03_23105 PF18500 CadC C-terminal domain 1 LTQ03_23105 PF00486 Transcriptional regulatory protein, C terminal LTQ03_23115 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_23115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ03_23120 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_23130 PF00664 ABC transporter transmembrane region LTQ03_23130 PF00005 ABC transporter LTQ03_23135 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_23155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_23155 PF00529 HlyD membrane-fusion protein of T1SS LTQ03_23160 PF00873 AcrB/AcrD/AcrF family LTQ03_23175 PF00404 Dockerin type I domain LTQ03_23175 PF02018 Carbohydrate binding domain LTQ03_23175 PF00759 Glycosyl hydrolase family 9 LTQ03_23175 PF02927 Cellulase N-terminal ig-like domain LTQ03_23195 PF08274 PhnA Zinc-Ribbon LTQ03_23195 PF03831 PhnA domain LTQ03_23215 PF01810 LysE type translocator LTQ03_23220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ03_23220 PF03466 LysR substrate binding domain LTQ03_23225 PF02311 AraC-like ligand binding domain LTQ03_23225 PF12833 Helix-turn-helix domain LTQ03_23230 PF07715 TonB-dependent Receptor Plug Domain LTQ03_23230 PF04886 PT repeat LTQ03_23230 PF00593 TonB dependent receptor LTQ03_23240 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_23245 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ03_23250 PF00528 Binding-protein-dependent transport system inner membrane component LTQ03_23255 PF00005 ABC transporter LTQ03_23260 PF00465 Iron-containing alcohol dehydrogenase LTQ03_23265 PF12833 Helix-turn-helix domain LTQ03_23265 PF06719 AraC-type transcriptional regulator N-terminus LTQ03_23275 PF01042 Endoribonuclease L-PSP LTQ03_23290 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ03_23290 PF12804 MobA-like NTP transferase domain LTQ03_23310 PF04224 Protein of unknown function, DUF417 LTQ03_23315 PF02567 Phenazine biosynthesis-like protein LTQ03_23325 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ03_23335 PF00704 Glycosyl hydrolases family 18 LTQ03_23335 PF06483 Chitinase C LTQ03_23340 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_23340 PF07694 5TMR of 5TMR-LYT LTQ03_23355 PF07943 Penicillin-binding protein 5, C-terminal domain LTQ03_23355 PF00768 D-alanyl-D-alanine carboxypeptidase LTQ03_23365 PF00849 RNA pseudouridylate synthase LTQ03_23375 PF00107 Zinc-binding dehydrogenase LTQ03_23375 PF16884 N-terminal domain of oxidoreductase LTQ03_23380 PF00440 Bacterial regulatory proteins, tetR family LTQ03_23380 PF16925 Tetracyclin repressor-like, C-terminal domain LTQ03_23385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ03_23385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ03_23395 PF00691 OmpA family LTQ03_23395 PF04972 BON domain LTQ03_23405 PF00158 Sigma-54 interaction domain LTQ03_23405 PF01590 GAF domain LTQ03_23410 PF00042 Globin LTQ03_23410 PF00175 Oxidoreductase NAD-binding domain LTQ03_23410 PF00970 Oxidoreductase FAD-binding domain LTQ03_23420 PF00654 Voltage gated chloride channel LTQ03_23425 PF02492 CobW/HypB/UreG, nucleotide-binding domain LTQ03_23425 PF07683 Cobalamin synthesis protein cobW C-terminal domain LTQ03_23430 PF00270 DEAD/DEAH box helicase LTQ03_23430 PF00271 Helicase conserved C-terminal domain LTQ03_23435 PF01810 LysE type translocator LTQ03_23460 PF00072 Response regulator receiver domain LTQ03_23460 PF00486 Transcriptional regulatory protein, C terminal LTQ03_23465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_23465 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_23480 PF01037 Lrp/AsnC ligand binding domain LTQ03_23505 PF03264 NapC/NirT cytochrome c family, N-terminal region LTQ03_23510 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LTQ03_23515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ03_23515 PF01568 Molydopterin dinucleotide binding domain LTQ03_23515 PF00384 Molybdopterin oxidoreductase LTQ03_23525 PF00037 4Fe-4S binding domain LTQ03_23525 PF13187 4Fe-4S dicluster domain LTQ03_23525 PF12800 4Fe-4S binding domain LTQ03_23530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_23530 PF07730 Histidine kinase LTQ03_23530 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LTQ03_23530 PF00672 HAMP domain LTQ03_23535 PF00072 Response regulator receiver domain LTQ03_23535 PF00196 Bacterial regulatory proteins, luxR family LTQ03_23540 PF03606 C4-dicarboxylate anaerobic carrier LTQ03_23555 PF12262 Bacterial virulence factor lipase N-terminal LTQ03_23560 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ03_23565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ03_23570 PF00873 AcrB/AcrD/AcrF family LTQ03_23590 PF00392 Bacterial regulatory proteins, gntR family LTQ03_23590 PF07702 UTRA domain LTQ03_23595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ03_23595 PF02378 Phosphotransferase system, EIIC LTQ03_23595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ03_23600 PF01074 Glycosyl hydrolases family 38 N-terminal domain LTQ03_23600 PF07748 Glycosyl hydrolases family 38 C-terminal domain LTQ03_23600 PF09261 Alpha mannosidase middle domain LTQ03_23605 PF02595 Glycerate kinase family LTQ03_23610 PF01238 Phosphomannose isomerase type I LTQ03_23630 PF00990 Diguanylate cyclase, GGDEF domain LTQ03_23630 PF05230 MASE2 domain LTQ03_23635 PF01926 50S ribosome-binding GTPase LTQ03_23645 PF00196 Bacterial regulatory proteins, luxR family LTQ03_23680 PF01212 Beta-eliminating lyase LTQ03_23685 PF00293 NUDIX domain LTQ03_23690 PF17868 AAA lid domain LTQ03_23690 PF12592 Protein of unknown function (DUF3763) LTQ03_23690 PF07728 AAA domain (dynein-related subfamily) LTQ03_23695 PF05762 VWA domain containing CoxE-like protein LTQ03_23720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ03_23720 PF00672 HAMP domain LTQ03_23755 PF04324 BFD-like [2Fe-2S] binding domain LTQ03_23755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ03_23755 PF18267 Rubredoxin NAD+ reductase C-terminal domain LTQ03_23755 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ03_23755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ03_23760 PF13806 Rieske-like [2Fe-2S] domain LTQ03_23765 PF01226 Formate/nitrite transporter LTQ03_23770 PF10414 Sirohaem synthase dimerisation region LTQ03_23770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ03_23770 PF14824 Sirohaem biosynthesis protein central LTQ03_23785 PF00072 Response regulator receiver domain LTQ03_23785 PF00486 Transcriptional regulatory protein, C terminal LTQ03_23790 PF00512 His Kinase A (phospho-acceptor) domain LTQ03_23790 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ03_23790 PF00672 HAMP domain LTQ03_23790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ03_23795 PF00375 Sodium:dicarboxylate symporter family LTQ03_23800 PF07715 TonB-dependent Receptor Plug Domain LTQ03_23800 PF00593 TonB dependent receptor LTQ03_23810 PF01618 MotA/TolQ/ExbB proton channel family LTQ03_23815 PF01618 MotA/TolQ/ExbB proton channel family LTQ03_23820 PF02472 Biopolymer transport protein ExbD/TolR LTQ03_23865 PF01297 Zinc-uptake complex component A periplasmic LTQ03_23870 PF00005 ABC transporter LTQ03_23875 PF00950 ABC 3 transport family LTQ03_23895 PF11756 Nitrous oxide-stimulated promoter LTQ03_23900 PF01554 MatE LTQ03_23920 PF07690 Major Facilitator Superfamily LTQ03_23925 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ03_23925 PF12833 Helix-turn-helix domain LTQ03_23930 PF00501 AMP-binding enzyme LTQ03_23930 PF13193 AMP-binding enzyme C-terminal domain LTQ03_23935 PF05199 GMC oxidoreductase LTQ03_23935 PF00732 GMC oxidoreductase LTQ03_23940 PF00085 Thioredoxin LTQ03_23945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LTQ03_23945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LTQ03_23960 PF04143 Sulphur transport LTQ03_23975 PF13597 Anaerobic ribonucleoside-triphosphate reductase LTQ03_23975 PF03477 ATP cone domain LTQ03_23985 PF01554 MatE LTQ03_23990 PF12833 Helix-turn-helix domain LTQ03_23995 PF00155 Aminotransferase class I and II LTQ03_24000 PF08443 RimK-like ATP-grasp domain LTQ03_24000 PF18030 RimK PreATP-grasp domain LTQ03_24005 PF12848 ABC transporter LTQ03_24005 PF00005 ABC transporter