locus-tag	class	description
LTQ54_00020	COG0840	transmembrane signaling receptor activity
LTQ54_00025	COG1254	Belongs to the acylphosphatase family
LTQ54_00030	COG2920	part of a sulfur-relay system
LTQ54_00035	COG0670	Belongs to the BI1 family
LTQ54_00040	COG1126	abc transporter atp-binding protein
LTQ54_00045	COG0765	amino acid transport
LTQ54_00050	COG4597	amino acid ABC transporter
LTQ54_00055	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LTQ54_00065	COG1666	GTP binding
LTQ54_00070	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LTQ54_00075	COG0574	Belongs to the PEP-utilizing enzyme family
LTQ54_00075	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LTQ54_00090	COG2996	Protein conserved in bacteria
LTQ54_00095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LTQ54_00095	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
LTQ54_00100	COG3008	intermembrane lipid transfer
LTQ54_00105	COG2995	paraquat-inducible protein a
LTQ54_00110	COG1132	(ABC) transporter
LTQ54_00115	COG1956	GAF domain-containing protein
LTQ54_00120	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
LTQ54_00135	COG0308	aminopeptidase N
LTQ54_00145	COG2902	Dehydrogenase
LTQ54_00150	COG0167	dihydroorotate dehydrogenase activity
LTQ54_00160	COG0116	Belongs to the methyltransferase superfamily
LTQ54_00160	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LTQ54_00170	COG0488	(ABC) transporter
LTQ54_00190	COG1067	ATP-dependent peptidase activity
LTQ54_00195	COG3120	sequence-specific DNA binding
LTQ54_00300	COG5002	protein histidine kinase activity
LTQ54_00300	COG0784	Response regulator, receiver
LTQ54_00315	COG3278	Belongs to the heme-copper respiratory oxidase family
LTQ54_00330	COG2010	Cytochrome c
LTQ54_00340	COG2217	Heavy metal translocating P-type atpase
LTQ54_00355	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LTQ54_00360	COG0589	response to stress
LTQ54_00365	COG0037	tRNA processing
LTQ54_00385	COG3842	ATPase activity
LTQ54_00395	COG1177	transmembrane transport
LTQ54_00405	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LTQ54_00415	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LTQ54_00420	COG0004	ammonium transporteR
LTQ54_00435	COG0437	4 iron, 4 sulfur cluster binding
LTQ54_00440	COG3383	formate dehydrogenase (NAD+) activity
LTQ54_00440	COG0243	molybdopterin cofactor binding
LTQ54_00450	COG3381	protein complex oligomerization
LTQ54_00470	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LTQ54_00480	COG0488	(ABC) transporter
LTQ54_00500	COG4191	Histidine kinase
LTQ54_00505	COG2204	response regulator
LTQ54_00515	COG4662	Binding-protein-dependent transport system inner membrane component
LTQ54_00520	COG3842	ATPase activity
LTQ54_00525	COG0746	molybdenum cofactor guanylyltransferase activity
LTQ54_00530	COG0303	'Molybdopterin
LTQ54_00540	COG1940	carbohydrate kinase activity
LTQ54_00545	COG3148	PFAM DTW domain containing protein
LTQ54_00560	COG0791	NLP P60 protein
LTQ54_00570	COG3001	Fructosamine kinase
LTQ54_00580	COG0307	riboflavin synthase, alpha
LTQ54_00585	COG0534	Mate efflux family protein
LTQ54_00590	COG1793	dna ligase
LTQ54_00600	COG2885	chlorophyll binding
LTQ54_00620	COG4176	ABC-type proline glycine betaine transport system permease component
LTQ54_00625	COG4175	Glycine betaine
LTQ54_00625	COG3448	diguanylate cyclase activity
LTQ54_00635	COG2204	response regulator
LTQ54_00640	COG0438	transferase activity, transferring glycosyl groups
LTQ54_00665	COG0438	transferase activity, transferring glycosyl groups
LTQ54_00670	COG1215	transferase activity, transferring glycosyl groups
LTQ54_00675	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LTQ54_00705	COG1742	UPF0060 membrane protein
LTQ54_00845	COG4160	amino acid transport
LTQ54_00850	COG4215	(ABC) transporter
LTQ54_00855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LTQ54_00860	COG1126	abc transporter atp-binding protein
LTQ54_00875	COG3385	transposase activity
LTQ54_00880	COG0826	peptidase U32
LTQ54_00895	COG0786	glutamate:sodium symporter activity
LTQ54_00930	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_00940	COG0546	phosphoglycolate phosphatase activity
LTQ54_00945	COG0653	protein targeting
LTQ54_00965	COG1619	proteins homologs of microcin C7 resistance protein MccF
LTQ54_00985	COG0456	acetyltransferase
LTQ54_00995	COG0346	lactoylglutathione lyase activity
LTQ54_01045	COG1051	belongs to the nudix hydrolase family
LTQ54_01055	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_01055	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_01070	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LTQ54_01110	COG0110	maltose O-acetyltransferase activity
LTQ54_01120	COG1187	pseudouridine synthase activity
LTQ54_01135	COG0494	nUDIX hydrolase
LTQ54_01155	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LTQ54_01165	COG0584	glycerophosphoryl diester phosphodiesterase
LTQ54_01170	COG2271	Major facilitator Superfamily
LTQ54_01190	COG0589	response to stress
LTQ54_01195	COG0415	Belongs to the DNA photolyase family
LTQ54_01200	COG3046	protein related to deoxyribodipyrimidine photolyase
LTQ54_01220	COG0419	ATPase involved in DNA repair
LTQ54_01225	COG0420	3'-5' exonuclease activity
LTQ54_01250	COG0454	-acetyltransferase
LTQ54_01255	COG2199	diguanylate cyclase activity
LTQ54_01255	COG2203	Gaf domain
LTQ54_01260	COG2226	methyltransferase
LTQ54_01265	COG4771	TonB-dependent receptor
LTQ54_01275	COG3469	chitinase activity
LTQ54_01305	COG0463	Glycosyl transferase, family 2
LTQ54_01315	COG0840	transmembrane signaling receptor activity
LTQ54_01355	COG0583	DNA-binding transcription factor activity
LTQ54_01360	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LTQ54_01365	COG5001	Diguanylate cyclase
LTQ54_01365	COG5002	protein histidine kinase activity
LTQ54_01410	COG0455	bacterial-type flagellum organization
LTQ54_01420	COG4964	Belongs to the GSP D family
LTQ54_01440	COG0583	DNA-binding transcription factor activity
LTQ54_01445	COG1733	regulation of RNA biosynthetic process
LTQ54_01475	COG2195	Cleaves the N-terminal amino acid of tripeptides
LTQ54_01490	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LTQ54_01495	COG3063	Type IV pilus biogenesis stability protein PilW
LTQ54_01505	COG1451	nucleotide metabolic process
LTQ54_01515	COG0583	DNA-binding transcription factor activity
LTQ54_01520	COG2814	Major facilitator Superfamily
LTQ54_01540	COG1247	-acetyltransferase
LTQ54_01585	COG1294	oxidase, subunit
LTQ54_01590	COG1271	oxidase subunit
LTQ54_01595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LTQ54_01625	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
LTQ54_01630	COG4139	cobalamin transport
LTQ54_01635	COG2988	succinylglutamate desuccinylase activity
LTQ54_01655	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LTQ54_01660	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LTQ54_01665	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LTQ54_01675	COG0702	epimerase
LTQ54_01680	COG1823	symporter activity
LTQ54_01690	COG4989	oxidoreductase activity
LTQ54_01720	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LTQ54_01735	COG3122	Protein conserved in bacteria
LTQ54_01740	COG3568	Endonuclease Exonuclease Phosphatase
LTQ54_01785	COG2925	Exonuclease
LTQ54_01795	COG1346	cytolysis
LTQ54_01800	COG0295	cytidine deaminase activity
LTQ54_01805	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
LTQ54_01810	COG0500	methyltransferase
LTQ54_01855	COG0776	regulation of translation
LTQ54_01870	COG0523	cobalamin synthesis protein
LTQ54_01880	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LTQ54_01895	COG2175	clavaminate synthase activity
LTQ54_01905	COG0583	DNA-binding transcription factor activity
LTQ54_01910	COG1404	Belongs to the peptidase S8 family
LTQ54_01920	COG0840	transmembrane signaling receptor activity
LTQ54_01950	COG0776	regulation of translation
LTQ54_01965	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
LTQ54_01990	COG1342	Belongs to the UPF0251 family
LTQ54_02005	COG2205	protein histidine kinase activity
LTQ54_02025	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LTQ54_02040	COG1289	transmembrane transporter activity
LTQ54_02055	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LTQ54_02085	COG0697	spore germination
LTQ54_02095	COG2873	o-acetylhomoserine
LTQ54_02100	COG1522	sequence-specific DNA binding
LTQ54_02115	COG1464	Belongs to the NlpA lipoprotein family
LTQ54_02130	COG2356	endonuclease I
LTQ54_02135	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LTQ54_02140	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LTQ54_02200	COG0596	Alpha beta hydrolase
LTQ54_02215	COG0072	phenylalanine-tRNA ligase activity
LTQ54_02215	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_02220	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LTQ54_02265	COG1643	Atp-dependent helicase
LTQ54_02295	COG3710	Transcriptional regulator
LTQ54_02315	COG3706	GGDEF domain
LTQ54_02330	COG0443	Heat shock 70 kDa protein
LTQ54_02345	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LTQ54_02360	COG3106	COG3106 Predicted ATPase
LTQ54_02380	COG2205	protein histidine kinase activity
LTQ54_02380	COG0784	Response regulator, receiver
LTQ54_02390	COG0494	nUDIX hydrolase
LTQ54_02395	COG0814	amino acid
LTQ54_02400	COG1760	l-serine dehydratase
LTQ54_02405	COG0814	amino acid
LTQ54_02415	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LTQ54_02420	COG0583	DNA-binding transcription factor activity
LTQ54_02430	COG0840	transmembrane signaling receptor activity
LTQ54_02435	COG0659	secondary active sulfate transmembrane transporter activity
LTQ54_02440	COG0017	Asparaginyl-tRNA synthetase
LTQ54_02460	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LTQ54_02470	COG3437	response regulator, receiver
LTQ54_02470	COG2770	Histidine kinase
LTQ54_02475	COG1448	Aminotransferase
LTQ54_02490	COG2176	DNA-directed DNA polymerase activity
LTQ54_02495	COG2258	MOSC domain
LTQ54_02510	COG2199	diguanylate cyclase activity
LTQ54_02520	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LTQ54_02530	COG3852	Histidine kinase
LTQ54_02535	COG2204	response regulator
LTQ54_02545	COG3070	regulator of competence-specific genes
LTQ54_02555	COG2431	L-lysine efflux transmembrane transporter activity
LTQ54_02565	COG0076	glutamate decarboxylase activity
LTQ54_02570	COG1737	Transcriptional regulator
LTQ54_02580	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LTQ54_02585	COG2985	domain, Protein
LTQ54_02585	COG3273	potassium ion transport
LTQ54_02590	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LTQ54_02615	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LTQ54_02630	COG1136	(ABC) transporter
LTQ54_02635	COG0534	Mate efflux family protein
LTQ54_02640	COG0702	epimerase
LTQ54_02650	COG2814	Major facilitator Superfamily
LTQ54_02660	COG1061	Type III restriction enzyme res subunit
LTQ54_02675	COG0642	Histidine kinase
LTQ54_02685	COG0612	Peptidase, M16
LTQ54_02690	COG4178	(ABC) transporter
LTQ54_02695	COG4771	TonB-dependent receptor
LTQ54_02710	COG0811	peptide transport
LTQ54_02715	COG0848	biopolymer transport protein
LTQ54_02730	COG0586	Pfam SNARE associated Golgi protein
LTQ54_02740	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LTQ54_02765	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LTQ54_02810	COG3008	intermembrane lipid transfer
LTQ54_02810	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LTQ54_02815	COG2995	paraquat-inducible protein a
LTQ54_02825	COG0583	DNA-binding transcription factor activity
LTQ54_02835	COG2113	Glycine betaine
LTQ54_02840	COG4176	ABC-type proline glycine betaine transport system permease component
LTQ54_02865	COG2866	Carboxypeptidase
LTQ54_02875	COG1280	lysine exporter protein (LysE YggA)
LTQ54_02880	COG0513	Belongs to the DEAD box helicase family
LTQ54_02910	COG4134	Bacterial extracellular solute-binding protein
LTQ54_02915	COG4135	transport system, permease component
LTQ54_02920	COG4136	ATPase activity
LTQ54_02925	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LTQ54_02930	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LTQ54_02930	COG0116	Belongs to the methyltransferase superfamily
LTQ54_02935	COG0564	pseudouridine synthase activity
LTQ54_02945	COG0733	neurotransmitter:sodium symporter activity
LTQ54_02955	COG0626	cystathionine gamma-synthase activity
LTQ54_02970	COG2818	Glycosylase
LTQ54_02990	COG1983	PspC domain protein
LTQ54_03000	COG1842	Phage shock protein A
LTQ54_03005	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LTQ54_03010	COG4166	transmembrane transport
LTQ54_03015	COG4168	peptide transport system, permease
LTQ54_03030	COG4172	Belongs to the ABC transporter superfamily
LTQ54_03045	COG1227	inorganic diphosphatase activity
LTQ54_03055	COG0243	molybdopterin cofactor binding
LTQ54_03060	COG3005	denitrification pathway
LTQ54_03065	COG4459	periplasmic nitrate reductase
LTQ54_03070	COG0390	transport system, permease component
LTQ54_03075	COG2116	formate transmembrane transporter activity
LTQ54_03105	COG0215	cysteine-tRNA ligase activity
LTQ54_03110	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LTQ54_03115	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LTQ54_03120	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LTQ54_03125	COG3012	SEC-C Motif Domain Protein
LTQ54_03130	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LTQ54_03130	COG0140	phosphoribosyl-ATP diphosphatase activity
LTQ54_03135	COG0107	imidazoleglycerol-phosphate synthase activity
LTQ54_03185	COG0210	DNA helicase
LTQ54_03270	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LTQ54_03275	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LTQ54_03280	COG0131	Imidazoleglycerol-phosphate dehydratase
LTQ54_03280	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LTQ54_03285	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LTQ54_03300	COG1757	Na H antiporter
LTQ54_03305	COG2916	Histone family protein nucleoid-structuring protein H-NS
LTQ54_03310	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_03325	COG2915	High frequency lysogenization protein hflD homolog
LTQ54_03330	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LTQ54_03335	COG0501	Belongs to the peptidase M48B family
LTQ54_03355	COG0156	8-amino-7-oxononanoate synthase activity
LTQ54_03360	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LTQ54_03365	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LTQ54_03370	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LTQ54_03375	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LTQ54_03380	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LTQ54_03385	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LTQ54_03390	COG1674	ftsk spoiiie
LTQ54_03395	COG1522	sequence-specific DNA binding
LTQ54_03400	COG0686	Belongs to the AlaDH PNT family
LTQ54_03410	COG0583	DNA-binding transcription factor activity
LTQ54_03425	COG0284	orotidine-5'-phosphate decarboxylase activity
LTQ54_03430	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LTQ54_03435	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LTQ54_03440	COG0776	regulation of translation
LTQ54_03445	COG0539	negative regulation of cytoplasmic translation
LTQ54_03450	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LTQ54_03455	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LTQ54_03460	COG2835	tetraacyldisaccharide 4'-kinase activity
LTQ54_03470	COG1132	(ABC) transporter
LTQ54_03475	COG0658	competence protein
LTQ54_03475	COG2333	competence protein COMEC
LTQ54_03485	COG4591	ABC-type transport system involved in lipoprotein release permease component
LTQ54_03490	COG1136	(ABC) transporter
LTQ54_03495	COG4591	ABC-type transport system involved in lipoprotein release permease component
LTQ54_03505	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LTQ54_03520	COG1252	NADH dehydrogenase
LTQ54_03525	COG3150	esterase
LTQ54_03550	COG0537	adenosine 5'-monophosphoramidase activity
LTQ54_03580	COG0517	IMP dehydrogenase activity
LTQ54_03580	COG0617	tRNA 3'-terminal CCA addition
LTQ54_03580	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LTQ54_03610	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LTQ54_03615	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LTQ54_03640	COG1902	pentaerythritol trinitrate reductase activity
LTQ54_03645	COG0346	lactoylglutathione lyase activity
LTQ54_03650	COG0583	DNA-binding transcription factor activity
LTQ54_03670	COG2015	COG2015, Alkyl sulfatase and related hydrolases
LTQ54_03685	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LTQ54_03690	COG1845	cytochrome c oxidase, subunit III
LTQ54_03695	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LTQ54_03700	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LTQ54_03705	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_03715	COG1309	transcriptional regulator
LTQ54_03720	COG0583	DNA-binding transcription factor activity
LTQ54_03735	COG3040	lipid binding
LTQ54_03750	COG1228	amidohydrolase
LTQ54_03760	COG1120	ATPase activity
LTQ54_03765	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LTQ54_03805	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LTQ54_03815	COG3118	belongs to the thioredoxin family
LTQ54_03820	COG4232	protein-disulfide reductase activity
LTQ54_03840	COG2207	Transcriptional regulator
LTQ54_03845	COG0697	spore germination
LTQ54_03855	COG0583	DNA-binding transcription factor activity
LTQ54_03880	COG1227	inorganic diphosphatase activity
LTQ54_03885	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LTQ54_03890	COG2233	PERMEase
LTQ54_03910	COG1280	lysine exporter protein (LysE YggA)
LTQ54_03915	COG1522	sequence-specific DNA binding
LTQ54_03920	COG1760	l-serine dehydratase
LTQ54_03930	COG2814	Major facilitator Superfamily
LTQ54_03945	COG1609	Transcriptional regulator
LTQ54_03950	COG3119	arylsulfatase activity
LTQ54_03975	COG0583	DNA-binding transcription factor activity
LTQ54_03980	COG1486	melibiose metabolic process
LTQ54_03990	COG0789	Transcriptional regulator
LTQ54_03995	COG0583	DNA-binding transcription factor activity
LTQ54_04010	COG0069	glutamate synthase activity
LTQ54_04035	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LTQ54_04075	COG0463	Glycosyl transferase, family 2
LTQ54_04075	COG1216	Glycosyl transferase, family 2
LTQ54_04080	COG0438	transferase activity, transferring glycosyl groups
LTQ54_04085	COG0328	RNA-DNA hybrid ribonuclease activity
LTQ54_04085	COG3341	Caulimovirus viroplasmin
LTQ54_04145	COG3126	Type III secretion system lipoprotein chaperone (YscW)
LTQ54_04150	COG1946	Acyl-CoA thioesterase
LTQ54_04160	COG1522	sequence-specific DNA binding
LTQ54_04175	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_04230	COG0813	purine-nucleoside phosphorylase activity
LTQ54_04250	COG2855	membrane
LTQ54_04270	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LTQ54_04275	COG2267	carboxylic ester hydrolase activity
LTQ54_04280	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LTQ54_04285	COG1169	isochorismate synthase
LTQ54_04290	COG0436	Aminotransferase
LTQ54_04295	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LTQ54_04300	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LTQ54_04315	COG1555	photosystem II stabilization
LTQ54_04320	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LTQ54_04325	COG0776	regulation of translation
LTQ54_04330	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LTQ54_04335	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LTQ54_04340	COG0740	serine-type endopeptidase activity
LTQ54_04345	COG0544	peptidyl-prolyl cis-trans isomerase activity
LTQ54_04355	COG2204	response regulator
LTQ54_04365	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LTQ54_04370	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LTQ54_04375	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LTQ54_04390	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LTQ54_04390	COG3321	synthase
LTQ54_04405	COG2070	2-Nitropropane dioxygenase
LTQ54_04405	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LTQ54_04410	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LTQ54_04415	COG3842	ATPase activity
LTQ54_04425	COG1175	transmembrane transport
LTQ54_04445	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LTQ54_04450	COG1280	lysine exporter protein (LysE YggA)
LTQ54_04455	COG2890	protein-(glutamine-N5) methyltransferase activity
LTQ54_04460	COG2840	Smr protein MutS2
LTQ54_04465	COG2062	phosphohistidine phosphatase, SixA
LTQ54_04475	COG1250	3-hydroxyacyl-CoA dehydrogenase
LTQ54_04475	COG1024	Enoyl-CoA hydratase
LTQ54_04480	COG0183	Belongs to the thiolase family
LTQ54_04495	COG2067	long-chain fatty acid transport protein
LTQ54_04510	COG3088	subunit of a heme lyase
LTQ54_04510	COG4235	cytochrome complex assembly
LTQ54_04520	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LTQ54_04525	COG1138	Cytochrome C-type biogenesis protein
LTQ54_04530	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LTQ54_04535	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LTQ54_04540	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LTQ54_04545	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LTQ54_04550	COG4133	protoheme IX ABC transporter activity
LTQ54_04560	COG0835	chemotaxis
LTQ54_04570	COG1192	Involved in chromosome partitioning
LTQ54_04575	COG2201	protein-glutamate methylesterase activity
LTQ54_04580	COG0643	Histidine kinase
LTQ54_04580	COG2198	Histidine kinase
LTQ54_04580	COG0784	Response regulator, receiver
LTQ54_04585	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LTQ54_04620	COG1684	flagellar biosynthetic protein fliR
LTQ54_04625	COG1987	bacterial-type flagellum assembly
LTQ54_04675	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LTQ54_04685	COG1677	Flagellar hook-basal body complex protein FliE
LTQ54_04705	COG1516	flagellar protein fliS
LTQ54_04715	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LTQ54_04725	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LTQ54_04730	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LTQ54_04750	COG1705	Flagellar rod assembly protein muramidase FlgJ
LTQ54_04750	COG3951	Flagellar rod assembly protein muramidase FlgJ
LTQ54_04755	COG1706	bacterial-type flagellum-dependent cell motility
LTQ54_04760	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LTQ54_04770	COG4787	bacterial-type flagellum-dependent cell motility
LTQ54_04775	COG1749	Flagellar hook protein flgE
LTQ54_04785	COG1558	bacterial-type flagellum-dependent cell motility
LTQ54_04790	COG1815	bacterial-type flagellum-dependent cell motility
LTQ54_04795	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LTQ54_04800	COG0835	chemotaxis
LTQ54_04800	COG0784	Response regulator, receiver
LTQ54_04805	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
LTQ54_04865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LTQ54_04870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LTQ54_04890	COG1216	Glycosyl transferase, family 2
LTQ54_04895	COG2986	histidine ammonia-lyase
LTQ54_04930	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_04945	COG2217	Heavy metal translocating P-type atpase
LTQ54_04945	COG2608	mercury ion transmembrane transporter activity
LTQ54_04985	COG2840	Smr protein MutS2
LTQ54_04990	COG1187	pseudouridine synthase activity
LTQ54_04995	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LTQ54_05005	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LTQ54_05010	COG2912	Transglutaminase-like superfamily
LTQ54_05015	COG3094	Invasion gene expression up-regulator, SirB
LTQ54_05020	COG2890	protein-(glutamine-N5) methyltransferase activity
LTQ54_05025	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LTQ54_05030	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LTQ54_05035	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LTQ54_05040	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LTQ54_05045	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LTQ54_05050	COG0193	aminoacyl-tRNA hydrolase activity
LTQ54_05155	COG2706	6-phosphogluconolactonase activity
LTQ54_05160	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LTQ54_05170	COG1702	phosphate starvation-inducible protein PhoH
LTQ54_05175	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LTQ54_05180	COG4535	Mg2 and Co2 transporter CorC
LTQ54_05185	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LTQ54_05190	COG2888	peptidyl-tyrosine sulfation
LTQ54_05195	COG0495	leucyl-tRNA aminoacylation
LTQ54_05200	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LTQ54_05205	COG1466	dna polymerase III delta subunit
LTQ54_05210	COG0799	negative regulation of ribosome biogenesis
LTQ54_05215	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LTQ54_05220	COG0768	penicillin binding
LTQ54_05225	COG0772	Belongs to the SEDS family
LTQ54_05230	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LTQ54_05235	COG1686	Belongs to the peptidase S11 family
LTQ54_05245	COG0321	lipoyl(octanoyl) transferase activity
LTQ54_05250	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LTQ54_05255	COG0733	neurotransmitter:sodium symporter activity
LTQ54_05275	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LTQ54_05285	COG2991	Protein conserved in bacteria
LTQ54_05290	COG1477	protein flavinylation
LTQ54_05295	COG2871	sodium ion transport
LTQ54_05300	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LTQ54_05305	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LTQ54_05315	COG1805	sodium ion transport
LTQ54_05320	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LTQ54_05325	COG0271	Belongs to the BolA IbaG family
LTQ54_05330	COG2813	Specifically methylates the guanine in position
LTQ54_05340	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LTQ54_05345	COG2211	Major facilitator Superfamily
LTQ54_05355	COG3248	Nucleoside-binding outer membrane protein
LTQ54_05360	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LTQ54_05365	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LTQ54_05370	COG2166	iron-sulfur cluster assembly
LTQ54_05375	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LTQ54_05380	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LTQ54_05390	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LTQ54_05390	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LTQ54_05400	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LTQ54_05405	COG1074	ATP-dependent DNA helicase activity
LTQ54_05415	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LTQ54_05425	COG0583	DNA-binding transcription factor activity
LTQ54_05430	COG3141	response to X-ray
LTQ54_05445	COG2095	MarC family integral membrane protein
LTQ54_05450	COG0737	Belongs to the 5'-nucleotidase family
LTQ54_05455	COG2171	N-acyltransferase activity
LTQ54_05465	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LTQ54_05465	COG0047	phosphoribosylformylglycinamidine synthase activity
LTQ54_05480	COG1253	flavin adenine dinucleotide binding
LTQ54_05485	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LTQ54_05515	COG0484	heat shock protein binding
LTQ54_05520	COG0443	Heat shock 70 kDa protein
LTQ54_05525	COG3385	transposase activity
LTQ54_05540	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LTQ54_05545	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LTQ54_05550	COG0497	DNA recombination
LTQ54_05555	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LTQ54_05560	COG2914	Belongs to the UPF0125 (RnfH) family
LTQ54_05565	COG2867	negative regulation of translational initiation
LTQ54_05580	COG0189	ligase activity
LTQ54_05580	COG4067	protein conserved in archaea
LTQ54_05605	COG0204	Acyl-transferase
LTQ54_05610	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LTQ54_05615	COG1115	amino acid carrier protein
LTQ54_05620	COG1584	GPR1 FUN34 yaaH family protein
LTQ54_05625	COG1757	Na H antiporter
LTQ54_05635	COG0519	Catalyzes the synthesis of GMP from XMP
LTQ54_05635	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LTQ54_05640	COG0516	GMP reductase activity
LTQ54_05640	COG0517	IMP dehydrogenase activity
LTQ54_05645	COG1570	exodeoxyribonuclease VII activity
LTQ54_05650	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LTQ54_05665	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
LTQ54_05670	COG0804	urea catabolic process
LTQ54_05675	COG0832	Belongs to the urease beta subunit family
LTQ54_05680	COG0831	urea catabolic process
LTQ54_05720	COG3706	GGDEF domain
LTQ54_05730	COG1160	GTP binding
LTQ54_05735	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LTQ54_05740	COG2976	Protein conserved in bacteria
LTQ54_05745	COG0124	histidyl-tRNA synthetase
LTQ54_05750	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LTQ54_05755	COG1426	Protein conserved in bacteria
LTQ54_05760	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LTQ54_05765	COG0105	UTP biosynthetic process
LTQ54_05770	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LTQ54_05775	COG2975	iron-sulfur cluster assembly
LTQ54_05785	COG0443	Heat shock 70 kDa protein
LTQ54_05790	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LTQ54_05800	COG0822	iron-sulfur transferase activity
LTQ54_05805	COG1104	cysteine desulfurase activity
LTQ54_05810	COG1959	2 iron, 2 sulfur cluster binding
LTQ54_05815	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LTQ54_05820	COG0483	inositol monophosphate 1-phosphatase activity
LTQ54_05825	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LTQ54_05830	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LTQ54_05835	COG1862	Preprotein translocase
LTQ54_05840	COG0343	queuine tRNA-ribosyltransferase activity
LTQ54_05845	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LTQ54_05850	COG0517	IMP dehydrogenase activity
LTQ54_05870	COG0583	DNA-binding transcription factor activity
LTQ54_05875	COG0450	alkyl hydroperoxide reductase
LTQ54_05880	COG3142	Participates in the control of copper homeostasis
LTQ54_05900	COG0704	Plays a role in the regulation of phosphate uptake
LTQ54_05905	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LTQ54_05910	COG0581	inorganic phosphate transmembrane transporter activity
LTQ54_05915	COG0573	inorganic phosphate transmembrane transporter activity
LTQ54_05920	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LTQ54_05925	COG0248	Ppx GppA phosphatase
LTQ54_05935	COG5002	protein histidine kinase activity
LTQ54_05940	COG0745	RESPONSE REGULATOR receiver
LTQ54_05945	COG2974	May be involved in recombination
LTQ54_05950	COG0826	peptidase U32
LTQ54_05955	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LTQ54_05965	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LTQ54_06010	COG0564	pseudouridine synthase activity
LTQ54_06015	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LTQ54_06020	COG0741	lytic transglycosylase activity
LTQ54_06025	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LTQ54_06030	COG0077	Prephenate dehydratase
LTQ54_06030	COG1605	Chorismate mutase
LTQ54_06035	COG5001	Diguanylate cyclase
LTQ54_06040	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LTQ54_06045	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LTQ54_06055	COG0488	(ABC) transporter
LTQ54_06065	COG0739	heme binding
LTQ54_06070	COG0287	Prephenate dehydrogenase
LTQ54_06070	COG1605	Chorismate mutase
LTQ54_06075	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LTQ54_06085	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LTQ54_06090	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LTQ54_06100	COG1966	Carbon starvation protein
LTQ54_06105	COG3275	phosphorelay sensor kinase activity
LTQ54_06110	COG3279	Response regulator of the LytR AlgR family
LTQ54_06115	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LTQ54_06120	COG1047	Peptidyl-prolyl cis-trans
LTQ54_06130	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LTQ54_06135	COG0196	riboflavin kinase activity
LTQ54_06140	COG0728	peptidoglycan biosynthetic process
LTQ54_06145	COG0268	Binds directly to 16S ribosomal RNA
LTQ54_06150	COG0640	Transcriptional regulator
LTQ54_06155	COG0583	DNA-binding transcription factor activity
LTQ54_06160	COG1283	sodium-dependent phosphate transmembrane transporter activity
LTQ54_06170	COG0745	RESPONSE REGULATOR receiver
LTQ54_06175	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LTQ54_06180	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LTQ54_06185	COG0730	response to heat
LTQ54_06195	COG0494	nUDIX hydrolase
LTQ54_06220	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LTQ54_06230	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LTQ54_06235	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LTQ54_06240	COG4974	Belongs to the 'phage' integrase family
LTQ54_06245	COG0716	FMN binding
LTQ54_06255	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LTQ54_06260	COG0513	Belongs to the DEAD box helicase family
LTQ54_06265	COG3022	response to hydroperoxide
LTQ54_06270	COG1115	amino acid carrier protein
LTQ54_06285	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LTQ54_06290	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LTQ54_06295	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LTQ54_06300	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LTQ54_06305	COG0083	homoserine kinase activity
LTQ54_06320	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LTQ54_06325	COG0745	RESPONSE REGULATOR receiver
LTQ54_06335	COG0784	Response regulator, receiver
LTQ54_06335	COG2198	Histidine kinase
LTQ54_06335	COG5002	protein histidine kinase activity
LTQ54_06340	COG2203	Gaf domain
LTQ54_06340	COG3706	GGDEF domain
LTQ54_06340	COG4251	negative regulation of phosphorylation
LTQ54_06340	COG5001	Diguanylate cyclase
LTQ54_06345	COG1242	4 iron, 4 sulfur cluster binding
LTQ54_06350	COG0070	glutamate synthase
LTQ54_06350	COG0067	glutamate synthase
LTQ54_06350	COG0069	glutamate synthase activity
LTQ54_06360	COG0069	glutamate synthase activity
LTQ54_06360	COG0070	glutamate synthase
LTQ54_06360	COG0067	glutamate synthase
LTQ54_06365	COG0493	'glutamate synthase
LTQ54_06375	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LTQ54_06385	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LTQ54_06390	COG2860	membrane
LTQ54_06400	COG0583	DNA-binding transcription factor activity
LTQ54_06405	COG0730	response to heat
LTQ54_06410	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LTQ54_06415	COG0505	Belongs to the CarA family
LTQ54_06420	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LTQ54_06425	COG0494	nUDIX hydrolase
LTQ54_06430	COG0653	protein targeting
LTQ54_06435	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
LTQ54_06440	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LTQ54_06445	COG0849	cell division
LTQ54_06450	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LTQ54_06455	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LTQ54_06460	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LTQ54_06465	COG0772	Belongs to the SEDS family
LTQ54_06470	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LTQ54_06475	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LTQ54_06480	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LTQ54_06485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LTQ54_06490	COG0768	penicillin binding
LTQ54_06495	COG3116	cell division
LTQ54_06500	COG0275	rRNA processing
LTQ54_06510	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LTQ54_06525	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LTQ54_06535	COG2969	positive regulation of protein catabolic process
LTQ54_06540	COG0625	glutathione transferase activity
LTQ54_06545	COG2857	Cytochrome c1
LTQ54_06550	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LTQ54_06555	COG0723	plastoquinol--plastocyanin reductase activity
LTQ54_06560	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LTQ54_06565	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LTQ54_06570	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LTQ54_06575	COG3105	Protein conserved in bacteria
LTQ54_06585	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LTQ54_06595	COG0187	DNA topoisomerase II activity
LTQ54_06600	COG3150	esterase
LTQ54_06610	COG3151	Protein conserved in bacteria
LTQ54_06615	COG0494	nUDIX hydrolase
LTQ54_06620	COG1538	Outer membrane efflux protein
LTQ54_06625	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LTQ54_06625	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LTQ54_06630	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LTQ54_06640	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LTQ54_06645	COG3025	triphosphatase activity
LTQ54_06650	COG1392	Phosphate transport regulator
LTQ54_06655	COG0306	phosphate transporter
LTQ54_06660	COG4991	sh3 domain protein
LTQ54_06670	COG3409	Peptidoglycan-binding domain 1 protein
LTQ54_06670	COG3267	Type II secretory pathway component ExeA
LTQ54_06675	COG0617	tRNA 3'-terminal CCA addition
LTQ54_06680	COG1968	undecaprenyl-diphosphatase activity
LTQ54_06685	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LTQ54_06690	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LTQ54_06695	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LTQ54_06700	COG0596	Alpha beta hydrolase
LTQ54_06705	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LTQ54_06710	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LTQ54_06715	COG1610	YqeY-like protein
LTQ54_06735	COG2873	o-acetylhomoserine
LTQ54_06740	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LTQ54_06745	COG1349	DNA-binding transcription factor activity
LTQ54_06750	COG0469	pyruvate kinase activity
LTQ54_06755	COG1802	Transcriptional regulator
LTQ54_06760	COG3706	GGDEF domain
LTQ54_06770	COG0028	Belongs to the TPP enzyme family
LTQ54_06775	COG1022	Amp-dependent synthetase and ligase
LTQ54_06810	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LTQ54_06815	COG0473	3-isopropylmalate dehydrogenase activity
LTQ54_06825	COG0066	3-isopropylmalate dehydratase activity
LTQ54_06840	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LTQ54_06845	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LTQ54_06850	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LTQ54_06855	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LTQ54_06860	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LTQ54_06865	COG2967	ApaG domain
LTQ54_06880	COG3610	response to peptide
LTQ54_06885	COG2966	Psort location CytoplasmicMembrane, score
LTQ54_06890	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LTQ54_06895	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LTQ54_06900	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LTQ54_06905	COG0142	geranyltranstransferase activity
LTQ54_06915	COG0039	L-malate dehydrogenase activity
LTQ54_06920	COG1438	arginine binding
LTQ54_06935	COG0589	response to stress
LTQ54_06940	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LTQ54_06955	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LTQ54_06960	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LTQ54_06965	COG3385	transposase activity
LTQ54_06970	COG0312	modulator of DNA gyrase
LTQ54_06975	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LTQ54_06990	COG0424	maF-like protein
LTQ54_06995	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LTQ54_07000	COG1792	Involved in formation and maintenance of cell shape
LTQ54_07005	COG1077	Cell shape determining protein MreB Mrl
LTQ54_07035	COG2165	general secretion pathway protein
LTQ54_07040	COG2165	general secretion pathway protein
LTQ54_07050	COG1459	type II secretion system
LTQ54_07055	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LTQ54_07065	COG3267	Type II secretory pathway component ExeA
LTQ54_07065	COG3409	Peptidoglycan-binding domain 1 protein
LTQ54_07090	COG2200	EAL domain
LTQ54_07090	COG2199	diguanylate cyclase activity
LTQ54_07095	COG0629	single-stranded DNA binding
LTQ54_07100	COG2197	response regulator
LTQ54_07110	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LTQ54_07120	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LTQ54_07125	COG0527	aspartate kinase activity
LTQ54_07210	COG0175	sulfate reduction
LTQ54_07215	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LTQ54_07220	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LTQ54_07280	COG0735	belongs to the Fur family
LTQ54_07290	COG0166	Belongs to the GPI family
LTQ54_07295	COG0432	Pfam Uncharacterised protein family UPF0047
LTQ54_07305	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LTQ54_07320	COG0359	binds to the 23S rRNA
LTQ54_07330	COG0360	Binds together with S18 to 16S ribosomal RNA
LTQ54_07335	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LTQ54_07340	COG0557	exoribonuclease II activity
LTQ54_07345	COG0402	S-adenosylhomocysteine deaminase activity
LTQ54_07350	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
LTQ54_07355	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LTQ54_07360	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LTQ54_07365	COG0330	HflC and HflK could
LTQ54_07370	COG0330	HflC and HflK could
LTQ54_07375	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LTQ54_07380	COG1923	regulation of RNA biosynthetic process
LTQ54_07385	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LTQ54_07390	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LTQ54_07395	COG0860	N-Acetylmuramoyl-L-alanine amidase
LTQ54_07400	COG0802	atpase or kinase
LTQ54_07405	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LTQ54_07500	COG1162	GTPase activity
LTQ54_07510	COG0471	metal ion transport
LTQ54_07510	COG0490	domain, Protein
LTQ54_07515	COG0840	transmembrane signaling receptor activity
LTQ54_07525	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LTQ54_07530	COG1053	succinate dehydrogenase
LTQ54_07535	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LTQ54_07540	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LTQ54_07550	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LTQ54_07555	COG1509	lysine 2,3-aminomutase activity
LTQ54_07560	COG1285	pathogenesis
LTQ54_07565	COG5001	Diguanylate cyclase
LTQ54_07575	COG5001	Diguanylate cyclase
LTQ54_07575	COG5002	protein histidine kinase activity
LTQ54_07575	COG3447	MASE1 domain protein
LTQ54_07590	COG0534	Mate efflux family protein
LTQ54_07605	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LTQ54_07615	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LTQ54_07650	COG0438	transferase activity, transferring glycosyl groups
LTQ54_07665	COG2244	polysaccharide biosynthetic process
LTQ54_07740	COG1596	polysaccharide export
LTQ54_07745	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LTQ54_07765	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LTQ54_07770	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LTQ54_07780	COG1045	serine acetyltransferase
LTQ54_07785	COG4942	peptidase
LTQ54_07805	COG1560	Kdo2-lipid A biosynthetic process
LTQ54_07810	COG0859	PFAM glycosyl transferase family 9
LTQ54_07815	COG1519	Transferase
LTQ54_07825	COG2089	acid synthase
LTQ54_07835	COG1083	cytidylyl-transferase
LTQ54_07840	COG0107	imidazoleglycerol-phosphate synthase activity
LTQ54_07855	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LTQ54_07860	COG1086	Polysaccharide biosynthesis protein
LTQ54_07870	COG3642	lipopolysaccharide core region biosynthetic process
LTQ54_07875	COG0859	PFAM glycosyl transferase family 9
LTQ54_07880	COG0463	Glycosyl transferase, family 2
LTQ54_07900	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LTQ54_07910	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LTQ54_07920	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LTQ54_07925	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LTQ54_07930	COG2003	Belongs to the UPF0758 family
LTQ54_07940	COG1309	transcriptional regulator
LTQ54_07945	COG1560	Kdo2-lipid A biosynthetic process
LTQ54_07950	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LTQ54_07955	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LTQ54_07960	COG1561	YicC-like family, N-terminal region
LTQ54_07965	COG1278	Cold shock
LTQ54_07995	COG2252	PERMEase
LTQ54_08000	COG0194	GDP metabolic process
LTQ54_08005	COG1758	RNA polymerase activity
LTQ54_08010	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LTQ54_08015	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LTQ54_08030	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LTQ54_08035	COG2183	response to ionizing radiation
LTQ54_08045	COG0596	Alpha beta hydrolase
LTQ54_08050	COG1040	competence protein
LTQ54_08055	COG0316	Belongs to the HesB IscA family
LTQ54_08055	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LTQ54_08060	COG0494	nUDIX hydrolase
LTQ54_08065	COG1218	3'(2'),5'-bisphosphate nucleotidase
LTQ54_08080	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LTQ54_08085	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LTQ54_08090	COG3156	type II secretion system protein K
LTQ54_08095	COG4795	General secretion pathway protein
LTQ54_08100	COG2165	general secretion pathway protein
LTQ54_08105	COG2165	general secretion pathway protein
LTQ54_08110	COG2165	general secretion pathway protein
LTQ54_08115	COG1459	type II secretion system
LTQ54_08120	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LTQ54_08130	COG3031	protein transport across the cell outer membrane
LTQ54_08135	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LTQ54_08145	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LTQ54_08155	COG0456	acetyltransferase
LTQ54_08160	COG1490	D-aminoacyl-tRNA deacylase activity
LTQ54_08165	COG1295	ribonuclease BN
LTQ54_08180	COG1217	gtp-binding protein TYPA
LTQ54_08185	COG0174	glutamine synthetase
LTQ54_08195	COG3852	Histidine kinase
LTQ54_08210	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LTQ54_08220	COG3078	GTPase activator activity
LTQ54_08245	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LTQ54_08245	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LTQ54_08260	COG0084	hydrolase, TatD family'
LTQ54_08265	COG0805	protein transport
LTQ54_08270	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LTQ54_08275	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LTQ54_08280	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LTQ54_08285	COG3165	ubiquinone biosynthetic process from chorismate
LTQ54_08290	COG2226	methyltransferase
LTQ54_08295	COG1322	Protein conserved in bacteria
LTQ54_08305	COG2081	HI0933 family
LTQ54_08315	COG1528	Iron-storage protein
LTQ54_08320	COG0589	response to stress
LTQ54_08335	COG0742	ribosomal rna small subunit methyltransferase
LTQ54_08340	COG5001	Diguanylate cyclase
LTQ54_08340	COG5002	protein histidine kinase activity
LTQ54_08345	COG1522	sequence-specific DNA binding
LTQ54_08355	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LTQ54_08360	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LTQ54_08420	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LTQ54_08425	COG0601	transmembrane transport
LTQ54_08475	COG1309	transcriptional regulator
LTQ54_08480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_08485	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_08490	COG2960	long-chain fatty acid transporting porin activity
LTQ54_08495	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LTQ54_08500	COG0583	DNA-binding transcription factor activity
LTQ54_08545	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LTQ54_08555	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LTQ54_08560	COG0408	coproporphyrinogen oxidase activity
LTQ54_08565	COG0009	L-threonylcarbamoyladenylate synthase
LTQ54_08570	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LTQ54_08575	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LTQ54_08580	COG0551	DNA topoisomerase type I activity
LTQ54_08585	COG2922	Belongs to the Smg family
LTQ54_08590	COG0758	DNA mediated transformation
LTQ54_08605	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LTQ54_08610	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LTQ54_08610	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LTQ54_08615	COG0569	domain protein
LTQ54_08620	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LTQ54_08630	COG1272	protein, Hemolysin III
LTQ54_08635	COG4326	sporulation control protein
LTQ54_08645	COG3084	Protein conserved in bacteria
LTQ54_08655	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LTQ54_08660	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LTQ54_08670	COG0606	chelatase, subunit chli
LTQ54_08680	COG3978	acetolactate synthase activity
LTQ54_08685	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LTQ54_08690	COG0129	dihydroxy-acid dehydratase activity
LTQ54_08700	COG0583	DNA-binding transcription factor activity
LTQ54_08705	COG2814	Major facilitator Superfamily
LTQ54_08715	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LTQ54_08720	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LTQ54_08725	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LTQ54_08730	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LTQ54_08735	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LTQ54_08740	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LTQ54_08755	COG3312	ion transport
LTQ54_08760	COG1475	DNA binding
LTQ54_08765	COG1192	Involved in chromosome partitioning
LTQ54_08770	COG0357	Ribosomal RNA small subunit methyltransferase G
LTQ54_08775	COG0445	tRNA wobble uridine modification
LTQ54_08780	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LTQ54_08790	COG0706	membrane insertase activity
LTQ54_08795	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LTQ54_08800	COG0594	ribonuclease P activity
LTQ54_08805	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LTQ54_08810	COG1126	abc transporter atp-binding protein
LTQ54_08825	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LTQ54_08830	COG0592	DNA-directed DNA polymerase activity
LTQ54_08835	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LTQ54_08840	COG0187	DNA topoisomerase II activity
LTQ54_08850	COG3977	Valine--pyruvate aminotransferase
LTQ54_08855	COG0366	Alpha amylase catalytic
LTQ54_08860	COG0751	glycine-tRNA ligase activity
LTQ54_08865	COG0752	glycyl-tRNA synthetase alpha subunit
LTQ54_08870	COG2119	membrane
LTQ54_08880	COG0425	Belongs to the sulfur carrier protein TusA family
LTQ54_08895	COG0604	alcohol dehydrogenase
LTQ54_08900	COG0183	Belongs to the thiolase family
LTQ54_08905	COG1024	Enoyl-CoA hydratase
LTQ54_08905	COG1250	3-hydroxyacyl-CoA dehydrogenase
LTQ54_08910	COG1739	Uncharacterized protein family UPF0029
LTQ54_08915	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LTQ54_08920	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LTQ54_08965	COG2132	Multicopper oxidase
LTQ54_08975	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LTQ54_08980	COG0352	thiamine-phosphate diphosphorylase activity
LTQ54_08985	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LTQ54_08990	COG2104	thiamine diphosphate biosynthetic process
LTQ54_08995	COG2022	thiamine diphosphate biosynthetic process
LTQ54_09005	COG0006	proline dipeptidase activity
LTQ54_09005	COG0006	proline dipeptidase activity
LTQ54_09035	COG3220	belongs to the UPF0276 family
LTQ54_09045	COG0210	DNA helicase
LTQ54_09055	COG0405	Gamma-glutamyltransferase
LTQ54_09060	COG1280	lysine exporter protein (LysE YggA)
LTQ54_09070	COG2962	Rard protein
LTQ54_09075	COG0514	ATP-dependent DNA helicase (RecQ)
LTQ54_09085	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LTQ54_09090	COG0248	Ppx GppA phosphatase
LTQ54_09095	COG0513	Belongs to the DEAD box helicase family
LTQ54_09100	COG3118	belongs to the thioredoxin family
LTQ54_09115	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LTQ54_09120	COG2871	sodium ion transport
LTQ54_09175	COG3071	HemY protein
LTQ54_09180	COG2959	enzyme of heme biosynthesis
LTQ54_09185	COG1587	Uroporphyrinogen-III synthase
LTQ54_09190	COG0181	hydroxymethylbilane synthase activity
LTQ54_09195	COG3072	Adenylate cyclase
LTQ54_09200	COG1965	Belongs to the frataxin family
LTQ54_09210	COG0019	diaminopimelate decarboxylase activity
LTQ54_09215	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LTQ54_09225	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LTQ54_09230	COG1011	Hydrolase
LTQ54_09235	COG2199	diguanylate cyclase activity
LTQ54_09235	COG2200	EAL domain
LTQ54_09235	COG3287	FIST C domain
LTQ54_09240	COG3287	FIST C domain
LTQ54_09240	COG2199	diguanylate cyclase activity
LTQ54_09240	COG2200	EAL domain
LTQ54_09245	COG3148	PFAM DTW domain containing protein
LTQ54_09260	COG0561	phosphatase activity
LTQ54_09265	COG2267	carboxylic ester hydrolase activity
LTQ54_09270	COG1280	lysine exporter protein (LysE YggA)
LTQ54_09275	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LTQ54_09280	COG0640	Transcriptional regulator
LTQ54_09285	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LTQ54_09325	COG2095	MarC family integral membrane protein
LTQ54_09335	COG0742	ribosomal rna small subunit methyltransferase
LTQ54_09340	COG0552	protein localization to endoplasmic reticulum
LTQ54_09345	COG2884	Cell division ATP-binding protein ftsE
LTQ54_09350	COG2177	Part of the ABC transporter FtsEX involved in
LTQ54_09360	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LTQ54_09365	COG0705	Rhomboid family
LTQ54_09370	COG1580	Controls the rotational direction of flagella during chemotaxis
LTQ54_09375	COG3161	chorismate lyase activity
LTQ54_09380	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LTQ54_09385	COG2937	Belongs to the GPAT DAPAT family
LTQ54_09390	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LTQ54_09395	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LTQ54_09400	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LTQ54_09405	COG0534	Mate efflux family protein
LTQ54_09410	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LTQ54_09430	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LTQ54_09435	COG4206	TonB-dependent receptor
LTQ54_09445	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LTQ54_09545	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LTQ54_09555	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LTQ54_09565	COG1072	(Pantothenic acid kinase))
LTQ54_09595	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LTQ54_09600	COG0250	Participates in transcription elongation, termination and antitermination
LTQ54_09610	COG0081	regulation of translation
LTQ54_09615	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LTQ54_09620	COG0222	ribosome binding
LTQ54_09635	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LTQ54_09640	COG2816	NAD+ diphosphatase activity
LTQ54_09660	COG3068	Protein conserved in bacteria
LTQ54_09665	COG1253	flavin adenine dinucleotide binding
LTQ54_09680	COG0151	Belongs to the GarS family
LTQ54_09685	COG0138	bifunctional purine biosynthesis protein purh
LTQ54_09690	COG0789	Transcriptional regulator
LTQ54_09695	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LTQ54_09700	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LTQ54_09705	COG2264	protein methyltransferase activity
LTQ54_09710	COG0439	Biotin carboxylase
LTQ54_09715	COG0511	ligase activity, forming carbon-carbon bonds
LTQ54_09720	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LTQ54_09725	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LTQ54_09740	COG2814	Major facilitator Superfamily
LTQ54_09745	COG2205	protein histidine kinase activity
LTQ54_09745	COG0784	Response regulator, receiver
LTQ54_09745	COG2198	Histidine kinase
LTQ54_09760	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_09770	COG3263	regulation of cellular component size
LTQ54_09780	COG4232	protein-disulfide reductase activity
LTQ54_09785	COG1438	arginine binding
LTQ54_09790	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LTQ54_09795	COG0540	Belongs to the ATCase OTCase family
LTQ54_09800	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LTQ54_09815	COG1288	antiporter activity
LTQ54_09820	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LTQ54_09825	COG1027	Aspartate ammonia-lyase
LTQ54_09830	COG3030	protein affecting phage T7 exclusion by the F plasmid
LTQ54_09835	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LTQ54_09845	COG2205	protein histidine kinase activity
LTQ54_09850	COG0745	RESPONSE REGULATOR receiver
LTQ54_09860	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LTQ54_09880	COG3152	Membrane
LTQ54_09895	COG1494	fructose-1,6-bisphosphatase
LTQ54_09900	COG3074	FtsZ-dependent cytokinesis
LTQ54_09905	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LTQ54_09910	COG1575	Belongs to the MenA family. Type 1 subfamily
LTQ54_09915	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LTQ54_09920	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LTQ54_09930	COG1609	Transcriptional regulator
LTQ54_09935	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LTQ54_09940	COG0254	rRNA binding
LTQ54_09945	COG0281	malic enzyme
LTQ54_09950	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LTQ54_09955	COG0626	cystathionine gamma-synthase activity
LTQ54_09960	COG0460	homoserine dehydrogenase
LTQ54_09960	COG0527	aspartate kinase activity
LTQ54_09965	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LTQ54_09975	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
LTQ54_09980	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LTQ54_09985	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LTQ54_10000	COG0165	Argininosuccinate lyase
LTQ54_10000	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LTQ54_10010	COG0251	oxidation-reduction process
LTQ54_10015	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LTQ54_10020	COG0678	peroxiredoxin activity
LTQ54_10020	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LTQ54_10035	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LTQ54_10070	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LTQ54_10080	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LTQ54_10085	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LTQ54_10090	COG0546	phosphoglycolate phosphatase activity
LTQ54_10095	COG0180	Tryptophanyl-tRNA synthetase
LTQ54_10115	COG2356	endonuclease I
LTQ54_10120	COG0512	Glutamine amidotransferase of anthranilate synthase
LTQ54_10125	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LTQ54_10135	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_10145	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LTQ54_10150	COG3954	Phosphoribulokinase
LTQ54_10155	COG3089	Belongs to the UPF0270 family
LTQ54_10160	COG0429	hydrolase of the alpha beta-hydrolase fold
LTQ54_10170	COG0488	(ABC) transporter
LTQ54_10175	COG2249	NAD(P)H dehydrogenase (quinone) activity
LTQ54_10190	COG1047	Peptidyl-prolyl cis-trans
LTQ54_10195	COG1446	asparaginase
LTQ54_10200	COG2900	Belongs to the SlyX family
LTQ54_10210	COG0545	Peptidyl-prolyl cis-trans isomerase
LTQ54_10215	COG2964	Protein conserved in bacteria
LTQ54_10220	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LTQ54_10225	COG2923	Belongs to the DsrF TusC family
LTQ54_10235	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LTQ54_10240	COG0049	tRNA binding
LTQ54_10245	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LTQ54_10260	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LTQ54_10265	COG0088	Forms part of the polypeptide exit tunnel
LTQ54_10270	COG0089	rRNA binding
LTQ54_10275	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LTQ54_10280	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LTQ54_10290	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LTQ54_10295	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LTQ54_10305	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LTQ54_10310	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LTQ54_10315	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LTQ54_10320	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LTQ54_10325	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LTQ54_10330	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LTQ54_10335	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LTQ54_10345	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LTQ54_10350	COG1841	ribosomal large subunit assembly
LTQ54_10355	COG0200	Binds to the 23S rRNA
LTQ54_10360	COG0201	protein transport
LTQ54_10365	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LTQ54_10370	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LTQ54_10375	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LTQ54_10380	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LTQ54_10385	COG0202	RNA polymerase activity
LTQ54_10390	COG0203	ribosomal protein L17
LTQ54_10400	COG0545	Peptidyl-prolyl cis-trans isomerase
LTQ54_10405	COG3061	Opacity-associated protein A
LTQ54_10405	COG3266	domain, Protein
LTQ54_10415	COG2153	protein acetylation
LTQ54_10465	COG0175	sulfate reduction
LTQ54_10470	COG2895	sulfate adenylyltransferase (ATP) activity
LTQ54_10475	COG3273	potassium ion transport
LTQ54_10475	COG0471	metal ion transport
LTQ54_10480	COG0529	Catalyzes the synthesis of activated sulfate
LTQ54_10515	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LTQ54_10525	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LTQ54_10530	COG0729	surface antigen
LTQ54_10535	COG2911	Protein conserved in bacteria
LTQ54_10540	COG2105	PFAM AIG2 family protein
LTQ54_10550	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LTQ54_10555	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LTQ54_10560	COG0163	prenyltransferase activity
LTQ54_10565	COG4143	(ABC) transporter
LTQ54_10570	COG1178	ABC-type Fe3 transport system permease component
LTQ54_10575	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
LTQ54_10580	COG3028	Belongs to the UPF0307 family
LTQ54_10585	COG0312	modulator of DNA gyrase
LTQ54_10590	COG2239	Acts as a magnesium transporter
LTQ54_10595	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_10600	COG1660	Displays ATPase and GTPase activities
LTQ54_10605	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_10610	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LTQ54_10620	COG1137	ATPase activity
LTQ54_10625	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LTQ54_10635	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LTQ54_10640	COG0517	IMP dehydrogenase activity
LTQ54_10640	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LTQ54_10650	COG1127	ABC transporter
LTQ54_10655	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LTQ54_10660	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LTQ54_10665	COG2854	intermembrane phospholipid transfer
LTQ54_10675	COG5007	Belongs to the BolA IbaG family
LTQ54_10680	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LTQ54_10685	COG0204	Acyl-transferase
LTQ54_10690	COG0251	oxidation-reduction process
LTQ54_10695	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LTQ54_10725	COG0456	acetyltransferase
LTQ54_10735	COG4269	membrane
LTQ54_10740	COG0501	Belongs to the peptidase M48B family
LTQ54_10745	COG0525	valine-tRNA ligase activity
LTQ54_10750	COG2927	DNA polymerase III (CHI subunit)
LTQ54_10755	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LTQ54_10760	COG0795	lipopolysaccharide-transporting ATPase activity
LTQ54_10765	COG0795	lipopolysaccharide-transporting ATPase activity
LTQ54_10915	COG0741	lytic transglycosylase activity
LTQ54_10920	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LTQ54_10935	COG2066	Belongs to the glutaminase family
LTQ54_10940	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LTQ54_10945	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LTQ54_10960	COG0762	integral membrane protein
LTQ54_10965	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LTQ54_10970	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LTQ54_10990	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LTQ54_10995	COG1678	Uncharacterized ACR, COG1678
LTQ54_11000	COG0189	ligase activity
LTQ54_11005	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LTQ54_11015	COG2356	endonuclease I
LTQ54_11020	COG3091	SprT-like family
LTQ54_11030	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LTQ54_11035	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LTQ54_11050	COG0191	fructose-bisphosphate aldolase activity
LTQ54_11055	COG0668	transmembrane transport
LTQ54_11060	COG1279	arginine transmembrane transporter activity
LTQ54_11075	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LTQ54_11080	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LTQ54_11085	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LTQ54_11095	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LTQ54_11100	COG3079	Belongs to the UPF0149 family
LTQ54_11105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LTQ54_11110	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LTQ54_11125	COG0354	folic acid binding
LTQ54_11130	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LTQ54_11135	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LTQ54_11140	COG1595	DNA-templated transcription, initiation
LTQ54_11160	COG0481	GTPase activity
LTQ54_11170	COG0571	ribonuclease III activity
LTQ54_11175	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LTQ54_11180	COG1381	Involved in DNA repair and RecF pathway recombination
LTQ54_11185	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LTQ54_11190	COG0736	holo-[acyl-carrier-protein] synthase activity
LTQ54_11195	COG2205	protein histidine kinase activity
LTQ54_11195	COG3437	response regulator, receiver
LTQ54_11195	COG3850	Histidine kinase
LTQ54_11195	COG4999	Histidine kinase
LTQ54_11200	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LTQ54_11205	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LTQ54_11210	COG3956	TIGRFAM MazG family protein
LTQ54_11215	COG0504	CTP synthase activity
LTQ54_11220	COG0148	phosphopyruvate hydratase activity
LTQ54_11225	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LTQ54_11230	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LTQ54_11240	COG0585	pseudouridine synthase activity
LTQ54_11245	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LTQ54_11250	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LTQ54_11260	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LTQ54_11265	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LTQ54_11270	COG1546	Belongs to the CinA family
LTQ54_11275	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LTQ54_11285	COG0527	aspartate kinase activity
LTQ54_11345	COG3630	sodium ion export across plasma membrane
LTQ54_11350	COG0511	ligase activity, forming carbon-carbon bonds
LTQ54_11350	COG5016	pyruvate
LTQ54_11355	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
LTQ54_11365	COG1238	metal cluster binding
LTQ54_11370	COG0612	Peptidase, M16
LTQ54_11375	COG2918	glutathione biosynthetic process
LTQ54_11385	COG1854	S-ribosylhomocysteine lyase activity
LTQ54_11390	COG4536	flavin adenine dinucleotide binding
LTQ54_11395	COG4137	Cytochrome C assembly protein
LTQ54_11400	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LTQ54_11405	COG0228	four-way junction DNA binding
LTQ54_11410	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LTQ54_11415	COG0336	Belongs to the RNA methyltransferase TrmD family
LTQ54_11420	COG0335	large ribosomal subunit rRNA binding
LTQ54_11430	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
LTQ54_11435	COG0237	dephospho-CoA kinase activity
LTQ54_11445	COG1459	type II secretion system
LTQ54_11450	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LTQ54_11460	COG0157	Belongs to the NadC ModD family
LTQ54_11470	COG2186	Transcriptional regulator
LTQ54_11475	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LTQ54_11480	COG0508	dehydrogenase complex catalyzes the overall conversion of
LTQ54_11485	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LTQ54_11500	COG0288	reversible hydration of carbon dioxide
LTQ54_11505	COG0659	secondary active sulfate transmembrane transporter activity
LTQ54_11510	COG1131	(ABC) transporter
LTQ54_11515	COG0842	Transport permease protein
LTQ54_11520	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LTQ54_11525	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LTQ54_11530	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LTQ54_11550	COG1489	DNA binding
LTQ54_11555	COG1643	Atp-dependent helicase
LTQ54_11560	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LTQ54_11565	COG1752	Esterase of the alpha-beta hydrolase superfamily
LTQ54_11570	COG1049	propionate catabolic process, 2-methylcitrate cycle
LTQ54_11585	COG0004	ammonium transporteR
LTQ54_11590	COG1840	ABC-type Fe3 transport system, periplasmic component
LTQ54_11600	COG3842	ATPase activity
LTQ54_11605	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LTQ54_11620	COG2971	BadF BadG BcrA BcrD
LTQ54_11630	COG4608	Belongs to the ABC transporter superfamily
LTQ54_11635	COG0444	Belongs to the ABC transporter superfamily
LTQ54_11640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LTQ54_11650	COG0747	negative chemotaxis
LTQ54_11660	COG2813	Specifically methylates the guanine in position
LTQ54_11665	COG0628	permease
LTQ54_11670	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LTQ54_11675	COG0316	Belongs to the HesB IscA family
LTQ54_11690	COG0739	heme binding
LTQ54_11695	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LTQ54_11700	COG2239	Acts as a magnesium transporter
LTQ54_11705	COG2027	D-alanyl-D-alanine carboxypeptidase
LTQ54_11715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LTQ54_11720	COG1534	Rna-binding protein
LTQ54_11725	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LTQ54_11730	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LTQ54_11735	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LTQ54_11740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LTQ54_11745	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LTQ54_11760	COG0779	Required for maturation of 30S ribosomal subunits
LTQ54_11765	COG0195	Participates in both transcription termination and antitermination
LTQ54_11770	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LTQ54_11775	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LTQ54_11780	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LTQ54_11785	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LTQ54_11790	COG1185	polyribonucleotide nucleotidyltransferase activity
LTQ54_11805	COG0534	Mate efflux family protein
LTQ54_11810	COG0826	peptidase U32
LTQ54_11815	COG0826	peptidase U32
LTQ54_11825	COG3154	lipid carrier protein
LTQ54_11830	COG3153	acetyltransferase
LTQ54_11845	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LTQ54_11855	COG0084	hydrolase, TatD family'
LTQ54_11860	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LTQ54_11865	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LTQ54_11870	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LTQ54_11880	COG0813	purine-nucleoside phosphorylase activity
LTQ54_11890	COG0560	Phosphoserine phosphatase
LTQ54_11900	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LTQ54_11905	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LTQ54_11935	COG4628	conserved protein (DUF2132)
LTQ54_11940	COG0583	DNA-binding transcription factor activity
LTQ54_11950	COG0583	DNA-binding transcription factor activity
LTQ54_11970	COG1022	Amp-dependent synthetase and ligase
LTQ54_12000	COG4964	Belongs to the GSP D family
LTQ54_12050	COG2059	Chromate
LTQ54_12055	COG0583	DNA-binding transcription factor activity
LTQ54_12065	COG1609	Transcriptional regulator
LTQ54_12075	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_12080	COG0534	Mate efflux family protein
LTQ54_12090	COG1175	transmembrane transport
LTQ54_12095	COG0395	ABC-type sugar transport system, permease component
LTQ54_12105	COG3250	beta-galactosidase activity
LTQ54_12110	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
LTQ54_12110	COG3408	Glycogen debranching enzyme
LTQ54_12120	COG0531	amino acid
LTQ54_12125	COG0531	amino acid
LTQ54_12130	COG2731	YhcH YjgK YiaL family protein
LTQ54_12135	COG3250	beta-galactosidase activity
LTQ54_12140	COG1609	Transcriptional regulator
LTQ54_12145	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LTQ54_12150	COG1085	galactose-1-phosphate uridylyltransferase
LTQ54_12160	COG2017	converts alpha-aldose to the beta-anomer
LTQ54_12165	COG1609	Transcriptional regulator
LTQ54_12170	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_12185	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LTQ54_12205	COG2195	Cleaves the N-terminal amino acid of tripeptides
LTQ54_12210	COG2252	PERMEase
LTQ54_12215	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LTQ54_12220	COG1073	alpha beta
LTQ54_12235	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LTQ54_12240	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LTQ54_12245	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LTQ54_12245	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LTQ54_12265	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LTQ54_12275	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LTQ54_12285	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LTQ54_12290	COG0142	geranyltranstransferase activity
LTQ54_12295	COG1722	exodeoxyribonuclease VII activity
LTQ54_12300	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LTQ54_12310	COG0301	tRNA thio-modification
LTQ54_12310	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LTQ54_12315	COG0583	DNA-binding transcription factor activity
LTQ54_12330	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LTQ54_12340	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LTQ54_12345	COG1611	Belongs to the LOG family
LTQ54_12360	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LTQ54_12360	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LTQ54_12370	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
LTQ54_12375	COG4580	involved in the transport of maltose and maltodextrins
LTQ54_12380	COG1464	Belongs to the NlpA lipoprotein family
LTQ54_12385	COG2011	ABC-type metal ion transport system permease component
LTQ54_12390	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LTQ54_12395	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LTQ54_12405	COG1609	Transcriptional regulator
LTQ54_12410	COG1263	PTS System
LTQ54_12410	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LTQ54_12415	COG0366	Alpha amylase catalytic
LTQ54_12435	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LTQ54_12460	COG0442	prolyl-tRNA aminoacylation
LTQ54_12465	COG1720	tRNA m6t6A37 methyltransferase activity
LTQ54_12470	COG0254	rRNA binding
LTQ54_12480	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LTQ54_12490	COG1671	Belongs to the UPF0178 family
LTQ54_12515	COG3098	single-species biofilm formation
LTQ54_12520	COG0564	pseudouridine synthase activity
LTQ54_12530	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LTQ54_12535	COG0024	Methionine aminopeptidase
LTQ54_12540	COG0052	Belongs to the universal ribosomal protein uS2 family
LTQ54_12545	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LTQ54_12550	COG0528	UMP kinase activity
LTQ54_12555	COG0233	cytoplasmic translational termination
LTQ54_12560	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LTQ54_12565	COG0575	Belongs to the CDS family
LTQ54_12575	COG0750	zinc metalloprotease
LTQ54_12585	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LTQ54_12590	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LTQ54_12595	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LTQ54_12600	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LTQ54_12610	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LTQ54_12615	COG0587	DNA-directed DNA polymerase activity
LTQ54_12620	COG0825	malonyl-CoA metabolic process
LTQ54_12625	COG0037	tRNA processing
LTQ54_12635	COG0347	Belongs to the P(II) protein family
LTQ54_12640	COG3021	interspecies interaction between organisms
LTQ54_12650	COG0741	lytic transglycosylase activity
LTQ54_12650	COG1388	LysM domain
LTQ54_12655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LTQ54_12660	COG2226	methyltransferase
LTQ54_12665	COG0328	RNA-DNA hybrid ribonuclease activity
LTQ54_12670	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LTQ54_12685	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LTQ54_12690	COG0121	glutamine amidotransferase
LTQ54_12695	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LTQ54_12700	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LTQ54_12705	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LTQ54_12710	COG2233	PERMEase
LTQ54_12730	COG1393	Belongs to the ArsC family
LTQ54_12735	COG4783	chaperone-mediated protein folding
LTQ54_12750	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LTQ54_12755	COG2716	regulation of RNA biosynthetic process
LTQ54_12760	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LTQ54_12765	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LTQ54_12780	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LTQ54_12785	COG1393	Belongs to the ArsC family
LTQ54_12810	COG2837	iron assimilation
LTQ54_12815	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LTQ54_12820	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LTQ54_12825	COG2190	(PTS) system
LTQ54_12835	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_12845	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LTQ54_12855	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LTQ54_12880	COG0789	Transcriptional regulator
LTQ54_12890	COG0330	HflC and HflK could
LTQ54_12895	COG3118	belongs to the thioredoxin family
LTQ54_12900	COG0300	oxidoreductase activity
LTQ54_12905	COG1090	epimerase
LTQ54_12930	COG0622	Phosphoesterase
LTQ54_12945	COG3710	Transcriptional regulator
LTQ54_12950	COG0326	Molecular chaperone. Has ATPase activity
LTQ54_12955	COG0563	adenylate kinase activity
LTQ54_12960	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LTQ54_12965	COG3104	oligopeptide transport
LTQ54_12970	COG0250	Participates in transcription elongation, termination and antitermination
LTQ54_12975	COG0367	asparagine synthase
LTQ54_12980	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LTQ54_12980	COG4651	solute:proton antiporter activity
LTQ54_12985	COG1846	Transcriptional regulator
LTQ54_12985	COG1940	carbohydrate kinase activity
LTQ54_12990	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LTQ54_12995	COG1263	PTS System
LTQ54_12995	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LTQ54_13000	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LTQ54_13025	COG0596	Alpha beta hydrolase
LTQ54_13030	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LTQ54_13035	COG0033	Phosphoglucomutase
LTQ54_13045	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LTQ54_13050	COG0372	Belongs to the citrate synthase family
LTQ54_13060	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LTQ54_13065	COG1053	succinate dehydrogenase
LTQ54_13075	COG0567	Dehydrogenase, E1 component
LTQ54_13080	COG0508	dehydrogenase complex catalyzes the overall conversion of
LTQ54_13085	COG0045	succinate-CoA ligase (ADP-forming) activity
LTQ54_13095	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LTQ54_13100	COG1121	(ABC) transporter
LTQ54_13105	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LTQ54_13120	COG1918	ferrous iron import across plasma membrane
LTQ54_13140	COG0018	arginyl-trna synthetase
LTQ54_13145	COG3102	Protein conserved in bacteria
LTQ54_13150	COG0788	formyltetrahydrofolate deformylase activity
LTQ54_13160	COG1199	ATP-dependent helicase activity
LTQ54_13165	COG1214	PFAM Peptidase M22, glycoprotease
LTQ54_13180	COG0596	Alpha beta hydrolase
LTQ54_13185	COG0318	PFAM AMP-dependent synthetase and ligase
LTQ54_13190	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LTQ54_13195	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LTQ54_13200	COG2894	cell division
LTQ54_13205	COG0850	regulation of cytokinetic process
LTQ54_13210	COG3100	YcgL domain-containing protein
LTQ54_13215	COG2951	lytic endotransglycosylase activity
LTQ54_13220	COG0583	DNA-binding transcription factor activity
LTQ54_13225	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LTQ54_13235	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LTQ54_13250	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LTQ54_13255	COG2860	membrane
LTQ54_13260	COG3101	peptidyl-lysine hydroxylation
LTQ54_13270	COG0431	NADPH-dependent FMN reductase
LTQ54_13280	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LTQ54_13290	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LTQ54_13295	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LTQ54_13305	COG0101	tRNA pseudouridine synthase activity
LTQ54_13310	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LTQ54_13315	COG0285	dihydrofolate synthase activity
LTQ54_13320	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LTQ54_13325	COG1286	toxin biosynthetic process
LTQ54_13330	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LTQ54_13335	COG0583	DNA-binding transcription factor activity
LTQ54_13340	COG0745	RESPONSE REGULATOR receiver
LTQ54_13350	COG2832	Protein of unknown function (DUF454)
LTQ54_13355	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LTQ54_13360	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LTQ54_13365	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LTQ54_13370	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LTQ54_13385	COG2983	Belongs to the UPF0260 family
LTQ54_13390	COG1785	Belongs to the alkaline phosphatase family
LTQ54_13410	COG2226	methyltransferase
LTQ54_13425	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LTQ54_13430	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LTQ54_13440	COG3139	Protein of unknown function (DUF1315)
LTQ54_13445	COG0252	asparaginase activity
LTQ54_13450	COG0616	signal peptide processing
LTQ54_13455	COG1902	pentaerythritol trinitrate reductase activity
LTQ54_13455	COG0446	pyridine nucleotide-disulphide oxidoreductase
LTQ54_13460	COG0778	Nitroreductase
LTQ54_13465	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LTQ54_13480	COG0123	including yeast histone deacetylase and acetoin utilization protein
LTQ54_13485	COG0840	transmembrane signaling receptor activity
LTQ54_13495	COG1959	2 iron, 2 sulfur cluster binding
LTQ54_13510	COG0443	Heat shock 70 kDa protein
LTQ54_13515	COG0484	heat shock protein binding
LTQ54_13530	COG3082	Protein of unknown function (DUF1414)
LTQ54_13535	COG3081	Nucleoid-associated protein
LTQ54_13550	COG1757	Na H antiporter
LTQ54_13555	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LTQ54_13560	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LTQ54_13565	COG2095	MarC family integral membrane protein
LTQ54_13570	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_13570	COG1454	alcohol dehydrogenase
LTQ54_13590	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LTQ54_13600	COG2056	Na+-H+ antiporter family
LTQ54_13620	COG0346	lactoylglutathione lyase activity
LTQ54_13625	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LTQ54_13630	COG4660	Part of a membrane complex involved in electron transport
LTQ54_13635	COG4659	FMN binding
LTQ54_13640	COG4658	electron transport chain
LTQ54_13645	COG4656	Part of a membrane complex involved in electron transport
LTQ54_13650	COG2878	Part of a membrane complex involved in electron transport
LTQ54_13655	COG4657	Part of a membrane complex involved in electron transport
LTQ54_13665	COG0556	nucleotide-excision repair
LTQ54_13670	COG2204	response regulator
LTQ54_13675	COG2198	Histidine kinase
LTQ54_13680	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LTQ54_13685	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LTQ54_13690	COG0521	Mo-molybdopterin cofactor biosynthetic process
LTQ54_13695	COG0315	cyclic pyranopterin monophosphate synthase activity
LTQ54_13700	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LTQ54_13705	COG0314	molybdopterin synthase activity
LTQ54_13715	COG0601	transmembrane transport
LTQ54_13720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LTQ54_13725	COG0444	Belongs to the ABC transporter superfamily
LTQ54_13735	COG0435	Glutathione S-transferase
LTQ54_13740	COG0280	phosphate acetyltransferase
LTQ54_13740	COG0857	belongs to the CobB CobQ family
LTQ54_13745	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LTQ54_13750	COG3092	negative regulation of chromosome organization
LTQ54_13760	COG0366	Alpha amylase catalytic
LTQ54_13765	COG3706	GGDEF domain
LTQ54_13770	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LTQ54_13775	COG2165	general secretion pathway protein
LTQ54_13780	COG0653	protein targeting
LTQ54_13790	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LTQ54_13795	COG2186	Transcriptional regulator
LTQ54_13805	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_13805	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LTQ54_13810	COG0489	protein tyrosine kinase activity
LTQ54_13815	COG0572	uridine kinase
LTQ54_13820	COG2982	Protein involved in outer membrane biogenesis
LTQ54_13825	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
LTQ54_13830	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LTQ54_13835	COG0659	secondary active sulfate transmembrane transporter activity
LTQ54_13840	COG1530	ribonuclease E activity
LTQ54_13845	COG0564	pseudouridine synthase activity
LTQ54_13855	COG1399	metal-binding, possibly nucleic acid-binding protein
LTQ54_13860	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LTQ54_13865	COG0416	fatty acid biosynthetic process
LTQ54_13870	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LTQ54_13895	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LTQ54_13900	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LTQ54_13910	COG0470	DNA polymerase III
LTQ54_13915	COG0084	hydrolase, TatD family'
LTQ54_13920	COG1263	PTS System
LTQ54_13920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LTQ54_13940	COG4667	esterase of the alpha-beta hydrolase superfamily
LTQ54_13945	COG0469	pyruvate kinase activity
LTQ54_13950	COG1940	carbohydrate kinase activity
LTQ54_13955	COG0835	chemotaxis
LTQ54_13955	COG0784	Response regulator, receiver
LTQ54_13970	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LTQ54_13975	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_13980	COG0616	signal peptide processing
LTQ54_13985	COG2719	SpoVR family
LTQ54_13990	COG2718	Belongs to the UPF0229 family
LTQ54_13995	COG2766	serine protein kinase
LTQ54_14000	COG3713	MltA-interacting MipA family protein
LTQ54_14015	COG3013	Belongs to the UPF0304 family
LTQ54_14020	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LTQ54_14030	COG1882	Formate acetyltransferase
LTQ54_14060	COG4160	amino acid transport
LTQ54_14070	COG0708	Exodeoxyribonuclease III
LTQ54_14075	COG1770	oligopeptidase
LTQ54_14080	COG2814	Major facilitator Superfamily
LTQ54_14085	COG0840	transmembrane signaling receptor activity
LTQ54_14090	COG2850	peptidyl-arginine hydroxylation
LTQ54_14105	COG0730	response to heat
LTQ54_14110	COG1199	ATP-dependent helicase activity
LTQ54_14120	COG1187	pseudouridine synthase activity
LTQ54_14135	COG1278	Cold shock
LTQ54_14140	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LTQ54_14145	COG0542	response to heat
LTQ54_14150	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LTQ54_14155	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
LTQ54_14160	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LTQ54_14170	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LTQ54_14180	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LTQ54_14185	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LTQ54_14190	COG0297	glycogen (starch) synthase activity
LTQ54_14210	COG3070	regulator of competence-specific genes
LTQ54_14215	COG1609	Transcriptional regulator
LTQ54_14220	COG3381	protein complex oligomerization
LTQ54_14225	COG0745	RESPONSE REGULATOR receiver
LTQ54_14230	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LTQ54_14235	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LTQ54_14240	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LTQ54_14245	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
LTQ54_14250	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LTQ54_14255	COG3383	formate dehydrogenase (NAD+) activity
LTQ54_14270	COG0189	ligase activity
LTQ54_14270	COG4067	protein conserved in archaea
LTQ54_14275	COG0500	methyltransferase
LTQ54_14280	COG4106	trans-aconitate 2-methyltransferase activity
LTQ54_14285	COG1801	Protein of unknown function DUF72
LTQ54_14290	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LTQ54_14295	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LTQ54_14300	COG0840	transmembrane signaling receptor activity
LTQ54_14305	COG0632	four-way junction helicase activity
LTQ54_14310	COG2255	four-way junction helicase activity
LTQ54_14315	COG1271	oxidase subunit
LTQ54_14320	COG1294	oxidase, subunit
LTQ54_14325	COG4890	Cyd operon protein YbgT
LTQ54_14335	COG0824	Thioesterase
LTQ54_14340	COG0811	peptide transport
LTQ54_14355	COG0823	Involved in the tonB-independent uptake of proteins
LTQ54_14360	COG2885	chlorophyll binding
LTQ54_14365	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LTQ54_14370	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LTQ54_14390	COG1629	transport
LTQ54_14390	COG4774	siderophore transport
LTQ54_14400	COG1021	2,3-dihydroxybenzoate-AMP ligase
LTQ54_14415	COG2375	cellular response to nickel ion
LTQ54_14420	COG1021	2,3-dihydroxybenzoate-AMP ligase
LTQ54_14425	COG1169	isochorismate synthase
LTQ54_14430	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_14435	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LTQ54_14440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LTQ54_14440	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
LTQ54_14445	COG4592	Periplasmic binding protein
LTQ54_14450	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LTQ54_14455	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LTQ54_14465	COG1120	ATPase activity
LTQ54_14470	COG2977	Belongs to the P-Pant transferase superfamily
LTQ54_14485	COG5002	protein histidine kinase activity
LTQ54_14485	COG0784	Response regulator, receiver
LTQ54_14500	COG0786	glutamate:sodium symporter activity
LTQ54_14540	COG0583	DNA-binding transcription factor activity
LTQ54_14545	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LTQ54_14565	COG0745	RESPONSE REGULATOR receiver
LTQ54_14570	COG0463	Glycosyl transferase, family 2
LTQ54_14585	COG1032	radical SAM domain protein
LTQ54_14605	COG0583	DNA-binding transcription factor activity
LTQ54_14610	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LTQ54_14620	COG2350	Protein conserved in bacteria
LTQ54_14625	COG1607	acyl-coa hydrolase
LTQ54_14630	COG2917	probably involved in intracellular septation
LTQ54_14645	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LTQ54_14660	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LTQ54_14670	COG1301	dicarboxylic acid transport
LTQ54_14680	COG0330	HflC and HflK could
LTQ54_14685	COG0159	tryptophan synthase activity
LTQ54_14690	COG0133	tryptophan synthase activity
LTQ54_14695	COG0134	indole-3-glycerol-phosphate synthase activity
LTQ54_14695	COG0135	phosphoribosylanthranilate isomerase activity
LTQ54_14700	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LTQ54_14705	COG0512	Glutamine amidotransferase of anthranilate synthase
LTQ54_14710	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LTQ54_14720	COG0613	PHP domain protein
LTQ54_14725	COG0009	L-threonylcarbamoyladenylate synthase
LTQ54_14730	COG1187	pseudouridine synthase activity
LTQ54_14745	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LTQ54_14755	COG0417	DNA replication proofreading
LTQ54_14760	COG2197	response regulator
LTQ54_14765	COG0322	excinuclease ABC activity
LTQ54_14805	COG0019	diaminopimelate decarboxylase activity
LTQ54_14835	COG3385	transposase activity
LTQ54_14840	COG3302	dmso reductase anchor subunit
LTQ54_14845	COG0437	4 iron, 4 sulfur cluster binding
LTQ54_14850	COG0243	molybdopterin cofactor binding
LTQ54_14855	COG3381	protein complex oligomerization
LTQ54_14870	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LTQ54_14875	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LTQ54_14880	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LTQ54_14895	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LTQ54_14900	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
LTQ54_14905	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
LTQ54_14910	COG0437	4 iron, 4 sulfur cluster binding
LTQ54_14915	COG3301	Polysulphide reductase, NrfD
LTQ54_14920	COG1138	Cytochrome C-type biogenesis protein
LTQ54_14930	COG3088	subunit of a heme lyase
LTQ54_14930	COG4235	cytochrome complex assembly
LTQ54_14940	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LTQ54_14965	COG2989	Protein conserved in bacteria
LTQ54_14970	COG3108	Peptidase M15
LTQ54_14975	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LTQ54_14990	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LTQ54_15015	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LTQ54_15020	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LTQ54_15025	COG0840	transmembrane signaling receptor activity
LTQ54_15030	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LTQ54_15035	COG4988	ABC transporter
LTQ54_15040	COG0492	ferredoxin-NADP+ reductase activity
LTQ54_15070	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LTQ54_15085	COG2199	diguanylate cyclase activity
LTQ54_15085	COG2203	Gaf domain
LTQ54_15105	COG0471	metal ion transport
LTQ54_15110	COG2949	membrane
LTQ54_15115	COG0281	malic enzyme
LTQ54_15120	COG1643	Atp-dependent helicase
LTQ54_15130	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LTQ54_15165	COG0247	lactate metabolic process
LTQ54_15165	COG0277	FAD linked oxidase domain protein
LTQ54_15180	COG2986	histidine ammonia-lyase
LTQ54_15185	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LTQ54_15190	COG0010	Belongs to the arginase family
LTQ54_15195	COG1228	amidohydrolase
LTQ54_15205	COG4326	sporulation control protein
LTQ54_15215	COG0582	viral genome integration into host DNA
LTQ54_15225	COG2856	Zn peptidase
LTQ54_15275	COG4197	protein conserved in bacteria, prophage-related
LTQ54_15330	COG1078	dGTPase activity
LTQ54_15350	COG3772	lysozyme
LTQ54_15385	COG0740	serine-type endopeptidase activity
LTQ54_15510	COG3081	Nucleoid-associated protein
LTQ54_15515	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LTQ54_15525	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LTQ54_15530	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LTQ54_15535	COG3097	Belongs to the UPF0267 family
LTQ54_15550	COG0488	(ABC) transporter
LTQ54_15555	COG1309	transcriptional regulator
LTQ54_15565	COG1166	arginine decarboxylase activity
LTQ54_15570	COG0010	Belongs to the arginase family
LTQ54_15580	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LTQ54_15585	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_15590	COG0800	Aldolase
LTQ54_15595	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_15600	COG1917	Cupin 2, conserved barrel domain protein
LTQ54_15620	COG2186	Transcriptional regulator
LTQ54_15625	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_15640	COG0840	transmembrane signaling receptor activity
LTQ54_15675	COG2186	Transcriptional regulator
LTQ54_15680	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_15685	COG2186	Transcriptional regulator
LTQ54_15690	COG0517	IMP dehydrogenase activity
LTQ54_15695	COG2176	DNA-directed DNA polymerase activity
LTQ54_15715	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_15740	COG3033	Beta-eliminating lyase
LTQ54_15805	COG0471	metal ion transport
LTQ54_15810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LTQ54_15810	COG4191	Histidine kinase
LTQ54_15825	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LTQ54_15845	COG0454	-acetyltransferase
LTQ54_15885	COG0730	response to heat
LTQ54_15895	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LTQ54_15900	COG1280	lysine exporter protein (LysE YggA)
LTQ54_15920	COG1115	amino acid carrier protein
LTQ54_15940	COG1115	amino acid carrier protein
LTQ54_15955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_15970	COG3290	protein histidine kinase activity
LTQ54_15975	COG4565	transcriptional regulatory protein
LTQ54_15980	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LTQ54_15985	COG0363	glucosamine-6-phosphate deaminase activity
LTQ54_15990	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LTQ54_16000	COG4628	conserved protein (DUF2132)
LTQ54_16030	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LTQ54_16040	COG2814	Major facilitator Superfamily
LTQ54_16050	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LTQ54_16055	COG0372	Belongs to the citrate synthase family
LTQ54_16060	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LTQ54_16065	COG2828	Protein conserved in bacteria
LTQ54_16095	COG0561	phosphatase activity
LTQ54_16100	COG0602	queuosine metabolic process
LTQ54_16105	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LTQ54_16110	COG3706	GGDEF domain
LTQ54_16120	COG2885	chlorophyll binding
LTQ54_16170	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_16170	COG3321	synthase
LTQ54_16170	COG0604	alcohol dehydrogenase
LTQ54_16190	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LTQ54_16195	COG0110	maltose O-acetyltransferase activity
LTQ54_16200	COG2207	Transcriptional regulator
LTQ54_16210	COG2188	Transcriptional regulator
LTQ54_16220	COG1263	PTS System
LTQ54_16220	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LTQ54_16225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_16230	COG0800	Aldolase
LTQ54_16235	COG1473	amidohydrolase
LTQ54_16250	COG2964	Protein conserved in bacteria
LTQ54_16255	COG0251	oxidation-reduction process
LTQ54_16260	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LTQ54_16265	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LTQ54_16280	COG0628	permease
LTQ54_16310	COG0668	transmembrane transport
LTQ54_16315	COG1803	Methylglyoxal synthase
LTQ54_16315	COG1597	lipid kinase activity
LTQ54_16345	COG0527	aspartate kinase activity
LTQ54_16355	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LTQ54_16360	COG0456	acetyltransferase
LTQ54_16380	COG1309	transcriptional regulator
LTQ54_16385	COG0641	radical SAM
LTQ54_16415	COG1846	Transcriptional regulator
LTQ54_16420	COG4175	Glycine betaine
LTQ54_16440	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_16445	COG1309	transcriptional regulator
LTQ54_16455	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LTQ54_16465	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LTQ54_16470	COG1473	amidohydrolase
LTQ54_16480	COG1522	sequence-specific DNA binding
LTQ54_16495	COG0745	RESPONSE REGULATOR receiver
LTQ54_16500	COG2205	protein histidine kinase activity
LTQ54_16520	COG0579	oxidoreductase
LTQ54_16535	COG2204	response regulator
LTQ54_16550	COG0800	Aldolase
LTQ54_16555	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_16560	COG4145	pantothenate transmembrane transporter activity
LTQ54_16570	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LTQ54_16600	COG2194	sulfuric ester hydrolase activity
LTQ54_16635	COG1132	(ABC) transporter
LTQ54_16640	COG4399	Belongs to the UPF0754 family
LTQ54_16670	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LTQ54_16705	COG0259	pyridoxamine-phosphate oxidase activity
LTQ54_16745	COG1444	tRNA N-acetyltransferase activity
LTQ54_16770	COG4608	Belongs to the ABC transporter superfamily
LTQ54_16775	COG0444	Belongs to the ABC transporter superfamily
LTQ54_16785	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LTQ54_16785	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
LTQ54_16825	COG3842	ATPase activity
LTQ54_16835	COG0745	RESPONSE REGULATOR receiver
LTQ54_16840	COG2205	protein histidine kinase activity
LTQ54_16860	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
LTQ54_16870	COG0625	glutathione transferase activity
LTQ54_16880	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LTQ54_16885	COG3186	Phenylalanine-4-hydroxylase
LTQ54_16900	COG0217	transcriptional regulatory protein
LTQ54_16915	COG2084	Dehydrogenase
LTQ54_16920	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LTQ54_16935	COG3385	transposase activity
LTQ54_17005	COG4591	ABC-type transport system involved in lipoprotein release permease component
LTQ54_17020	COG3275	phosphorelay sensor kinase activity
LTQ54_17025	COG3279	Response regulator of the LytR AlgR family
LTQ54_17030	COG0612	Peptidase, M16
LTQ54_17040	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LTQ54_17045	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LTQ54_17060	COG1902	pentaerythritol trinitrate reductase activity
LTQ54_17065	COG2814	Major facilitator Superfamily
LTQ54_17070	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_17080	COG2015	COG2015, Alkyl sulfatase and related hydrolases
LTQ54_17105	COG0724	RNA recognition motif
LTQ54_17110	COG4221	oxidoreductase activity
LTQ54_17135	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LTQ54_17160	COG0415	Belongs to the DNA photolyase family
LTQ54_17170	COG3806	Anti-sigma factor
LTQ54_17175	COG1595	DNA-templated transcription, initiation
LTQ54_17185	COG1942	4-Oxalocrotonate Tautomerase
LTQ54_17200	COG0786	glutamate:sodium symporter activity
LTQ54_17205	COG0446	pyridine nucleotide-disulphide oxidoreductase
LTQ54_17225	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_17225	COG2213	PTS system mannitol-specific
LTQ54_17230	COG0246	Mannitol dehydrogenase
LTQ54_17235	COG3722	fumarate hydratase activity
LTQ54_17240	COG0363	glucosamine-6-phosphate deaminase activity
LTQ54_17260	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LTQ54_17275	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LTQ54_17285	COG3366	ferrous iron transmembrane transporter activity
LTQ54_17290	COG0700	Nucleoside recognition
LTQ54_17295	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LTQ54_17340	COG0596	Alpha beta hydrolase
LTQ54_17355	COG3123	guanosine phosphorylase activity
LTQ54_17360	COG1741	Belongs to the pirin family
LTQ54_17385	COG2197	response regulator
LTQ54_17390	COG3851	Histidine kinase
LTQ54_17395	COG2271	Major facilitator Superfamily
LTQ54_17420	COG1054	Belongs to the UPF0176 family
LTQ54_17435	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LTQ54_17440	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LTQ54_17440	COG2207	Transcriptional regulator
LTQ54_17445	COG0534	Mate efflux family protein
LTQ54_17455	COG4172	Belongs to the ABC transporter superfamily
LTQ54_17460	COG0747	negative chemotaxis
LTQ54_17480	COG1304	FMN binding
LTQ54_17485	COG1620	l-lactate permease
LTQ54_17490	COG0583	DNA-binding transcription factor activity
LTQ54_17495	COG1505	serine-type exopeptidase activity
LTQ54_17505	COG0840	transmembrane signaling receptor activity
LTQ54_17525	COG0395	ABC-type sugar transport system, permease component
LTQ54_17530	COG2723	6-phospho-beta-galactosidase activity
LTQ54_17535	COG3842	ATPase activity
LTQ54_17540	COG3459	Glycosyltransferase 36 associated
LTQ54_17545	COG2017	converts alpha-aldose to the beta-anomer
LTQ54_17555	COG1609	Transcriptional regulator
LTQ54_17575	COG4172	Belongs to the ABC transporter superfamily
LTQ54_17585	COG1067	ATP-dependent peptidase activity
LTQ54_17650	COG0583	DNA-binding transcription factor activity
LTQ54_17660	COG1846	Transcriptional regulator
LTQ54_17665	COG2259	Doxx family
LTQ54_17675	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LTQ54_17680	COG3960	tartronate-semialdehyde synthase activity
LTQ54_17685	COG3622	Belongs to the hyi family
LTQ54_17690	COG2084	Dehydrogenase
LTQ54_17710	COG0745	RESPONSE REGULATOR receiver
LTQ54_17725	COG0402	S-adenosylhomocysteine deaminase activity
LTQ54_17750	COG2252	PERMEase
LTQ54_17770	COG4266	Belongs to the allantoicase family
LTQ54_17775	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LTQ54_17790	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LTQ54_17805	COG0789	Transcriptional regulator
LTQ54_17810	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LTQ54_17820	COG0402	S-adenosylhomocysteine deaminase activity
LTQ54_17830	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LTQ54_17855	COG1418	mRNA catabolic process
LTQ54_17860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LTQ54_17865	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LTQ54_17870	COG0583	DNA-binding transcription factor activity
LTQ54_17875	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_17880	COG0596	Alpha beta hydrolase
LTQ54_17930	COG1263	PTS System
LTQ54_17930	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LTQ54_17935	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_17940	COG1621	beta-fructofuranosidase activity
LTQ54_17950	COG0625	glutathione transferase activity
LTQ54_17960	COG0840	transmembrane signaling receptor activity
LTQ54_17965	COG3284	Transcriptional regulator
LTQ54_17970	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_17990	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
LTQ54_17995	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LTQ54_18020	COG4166	transmembrane transport
LTQ54_18035	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_18050	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_18050	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_18050	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_18055	COG2207	Transcriptional regulator
LTQ54_18065	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_18070	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_18080	COG3226	Transcriptional regulator
LTQ54_18090	COG0702	epimerase
LTQ54_18100	COG0840	transmembrane signaling receptor activity
LTQ54_18110	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_18120	COG1764	response to oxidative stress
LTQ54_18125	COG1846	Transcriptional regulator
LTQ54_18130	COG0814	amino acid
LTQ54_18135	COG2814	Major facilitator Superfamily
LTQ54_18150	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LTQ54_18175	COG0583	DNA-binding transcription factor activity
LTQ54_18200	COG0583	DNA-binding transcription factor activity
LTQ54_18210	COG4948	Mandelate Racemase Muconate Lactonizing
LTQ54_18220	COG2204	response regulator
LTQ54_18235	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LTQ54_18240	COG3639	organic phosphonate transmembrane transporter activity
LTQ54_18245	COG3639	organic phosphonate transmembrane transporter activity
LTQ54_18270	COG1288	antiporter activity
LTQ54_18275	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LTQ54_18280	COG3047	cAMP biosynthetic process
LTQ54_18290	COG1022	Amp-dependent synthetase and ligase
LTQ54_18300	COG4221	oxidoreductase activity
LTQ54_18305	COG0583	DNA-binding transcription factor activity
LTQ54_18310	COG1733	regulation of RNA biosynthetic process
LTQ54_18315	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_18325	COG2910	NAD(P)H-binding
LTQ54_18330	COG0583	DNA-binding transcription factor activity
LTQ54_18340	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LTQ54_18370	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LTQ54_18375	COG1595	DNA-templated transcription, initiation
LTQ54_18395	COG1901	pseudouridine methyltransferase
LTQ54_18460	COG0534	Mate efflux family protein
LTQ54_18470	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LTQ54_18475	COG2999	glutathione oxidoreductase activity
LTQ54_18485	COG0673	inositol 2-dehydrogenase activity
LTQ54_18505	COG0584	glycerophosphoryl diester phosphodiesterase
LTQ54_18510	COG3842	ATPase activity
LTQ54_18515	COG0395	ABC-type sugar transport system, permease component
LTQ54_18520	COG1175	transmembrane transport
LTQ54_18545	COG0189	ligase activity
LTQ54_18545	COG4067	protein conserved in archaea
LTQ54_18550	COG0189	ligase activity
LTQ54_18555	COG4533	DNA binding
LTQ54_18585	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_18590	COG1414	Transcriptional regulator
LTQ54_18595	COG0280	phosphate acetyltransferase
LTQ54_18600	COG0730	response to heat
LTQ54_18630	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LTQ54_18635	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LTQ54_18640	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LTQ54_18645	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LTQ54_18645	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LTQ54_18660	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LTQ54_18670	COG2354	Protein conserved in bacteria
LTQ54_18675	COG0418	dihydroorotase activity
LTQ54_18685	COG0633	Ferredoxin
LTQ54_18685	COG3217	Mosc domain protein beta barrel domain protein
LTQ54_18690	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LTQ54_18735	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LTQ54_18740	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LTQ54_18750	COG0848	biopolymer transport protein
LTQ54_18755	COG0811	peptide transport
LTQ54_18760	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LTQ54_18770	COG3721	Heme iron utilization protein
LTQ54_18775	COG0748	coenzyme F420 binding
LTQ54_18780	COG2096	Adenosyltransferase
LTQ54_18785	COG0835	chemotaxis
LTQ54_18785	COG0784	Response regulator, receiver
LTQ54_18790	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LTQ54_18795	COG0366	Alpha amylase catalytic
LTQ54_18805	COG3314	Sporulation integral membrane protein YlbJ
LTQ54_18830	COG0739	heme binding
LTQ54_18835	COG5001	Diguanylate cyclase
LTQ54_18840	COG0583	DNA-binding transcription factor activity
LTQ54_18845	COG2814	Major facilitator Superfamily
LTQ54_18860	COG0697	spore germination
LTQ54_18880	COG3118	belongs to the thioredoxin family
LTQ54_18885	COG4232	protein-disulfide reductase activity
LTQ54_18900	COG0668	transmembrane transport
LTQ54_18945	COG4989	oxidoreductase activity
LTQ54_18950	COG0513	Belongs to the DEAD box helicase family
LTQ54_18965	COG2176	DNA-directed DNA polymerase activity
LTQ54_18975	COG0513	Belongs to the DEAD box helicase family
LTQ54_18980	COG0778	Nitroreductase
LTQ54_18985	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LTQ54_18990	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LTQ54_18995	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LTQ54_19000	COG0667	Aldo Keto reductase
LTQ54_19010	COG2195	Cleaves the N-terminal amino acid of tripeptides
LTQ54_19045	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LTQ54_19060	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LTQ54_19065	COG0513	Belongs to the DEAD box helicase family
LTQ54_19070	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LTQ54_19085	COG1396	sequence-specific DNA binding
LTQ54_19090	COG3135	benzoate transporter
LTQ54_19145	COG0366	Alpha amylase catalytic
LTQ54_19155	COG0583	DNA-binding transcription factor activity
LTQ54_19160	COG0534	Mate efflux family protein
LTQ54_19190	COG0516	GMP reductase activity
LTQ54_19230	COG3710	Transcriptional regulator
LTQ54_19265	COG0697	spore germination
LTQ54_19270	COG0351	phosphomethylpyrimidine kinase
LTQ54_19275	COG1116	anion transmembrane transporter activity
LTQ54_19280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LTQ54_19285	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LTQ54_19290	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LTQ54_19295	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
LTQ54_19315	COG0583	DNA-binding transcription factor activity
LTQ54_19330	COG0402	S-adenosylhomocysteine deaminase activity
LTQ54_19365	COG1566	PFAM secretion protein HlyD family protein
LTQ54_19375	COG0628	permease
LTQ54_19405	COG4607	ABC-type enterochelin transport system periplasmic component
LTQ54_19410	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LTQ54_19415	COG4605	iron ion homeostasis
LTQ54_19420	COG4604	ABC transporter, ATP-binding protein
LTQ54_19425	COG3437	response regulator, receiver
LTQ54_19435	COG0583	DNA-binding transcription factor activity
LTQ54_19440	COG2814	Major facilitator Superfamily
LTQ54_19460	COG1522	sequence-specific DNA binding
LTQ54_19465	COG0840	transmembrane signaling receptor activity
LTQ54_19470	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LTQ54_19490	COG2203	Gaf domain
LTQ54_19490	COG3706	GGDEF domain
LTQ54_19490	COG4251	negative regulation of phosphorylation
LTQ54_19490	COG5001	Diguanylate cyclase
LTQ54_19495	COG2897	thiosulfate sulfurtransferase activity
LTQ54_19525	COG0302	gtp cyclohydrolase
LTQ54_19540	COG4681	YaeQ
LTQ54_19545	COG1278	Cold shock
LTQ54_19550	COG2133	pyrroloquinoline quinone binding
LTQ54_19560	COG1120	ATPase activity
LTQ54_19590	COG1024	Enoyl-CoA hydratase
LTQ54_19610	COG2985	domain, Protein
LTQ54_19620	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_19625	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_19640	COG3710	Transcriptional regulator
LTQ54_19650	COG1902	pentaerythritol trinitrate reductase activity
LTQ54_19650	COG0446	pyridine nucleotide-disulphide oxidoreductase
LTQ54_19665	COG1132	(ABC) transporter
LTQ54_19690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_19695	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_19725	COG2824	Alkylphosphonate utilization operon protein PhnA
LTQ54_19760	COG0765	amino acid transport
LTQ54_19765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LTQ54_19770	COG0765	amino acid transport
LTQ54_19775	COG1126	abc transporter atp-binding protein
LTQ54_19780	COG1979	alcohol dehydrogenase
LTQ54_19785	COG2207	Transcriptional regulator
LTQ54_19825	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LTQ54_19845	COG3059	membrane
LTQ54_19855	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LTQ54_19865	COG3706	GGDEF domain
LTQ54_19880	COG1686	Belongs to the peptidase S11 family
LTQ54_19890	COG0564	pseudouridine synthase activity
LTQ54_19900	COG2130	NADP-dependent
LTQ54_19905	COG1309	transcriptional regulator
LTQ54_19910	COG0545	Peptidyl-prolyl cis-trans isomerase
LTQ54_19930	COG3604	Transcriptional regulator
LTQ54_19935	COG1017	nitric oxide dioxygenase activity
LTQ54_19935	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LTQ54_19945	COG0038	chloride channel
LTQ54_19950	COG0523	cobalamin synthesis protein
LTQ54_19955	COG0513	Belongs to the DEAD box helicase family
LTQ54_19960	COG1280	lysine exporter protein (LysE YggA)
LTQ54_20035	COG0745	RESPONSE REGULATOR receiver
LTQ54_20060	COG3005	denitrification pathway
LTQ54_20070	COG0243	molybdopterin cofactor binding
LTQ54_20080	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
LTQ54_20080	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LTQ54_20085	COG3850	Histidine kinase
LTQ54_20090	COG2197	response regulator
LTQ54_20095	COG3069	C4-dicarboxylate transmembrane transporter activity
LTQ54_20110	COG2267	carboxylic ester hydrolase activity
LTQ54_20115	COG2067	long-chain fatty acid transport protein
LTQ54_20120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_20125	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LTQ54_20145	COG2188	Transcriptional regulator
LTQ54_20150	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_20150	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_20150	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_20155	COG0383	alpha-mannosidase activity
LTQ54_20160	COG1929	Belongs to the glycerate kinase type-1 family
LTQ54_20190	COG3706	GGDEF domain
LTQ54_20195	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LTQ54_20240	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LTQ54_20245	COG0494	nUDIX hydrolase
LTQ54_20255	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LTQ54_20280	COG0840	transmembrane signaling receptor activity
LTQ54_20315	COG2990	Protein conserved in bacteria
LTQ54_20330	COG0848	biopolymer transport protein
LTQ54_20370	COG1595	DNA-templated transcription, initiation
LTQ54_20380	COG1858	cytochrome C peroxidase
LTQ54_20385	COG1858	cytochrome C peroxidase
LTQ54_20395	COG0243	molybdopterin cofactor binding
LTQ54_20410	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LTQ54_20420	COG2116	formate transmembrane transporter activity
LTQ54_20425	COG1648	precorrin-2 dehydrogenase activity
LTQ54_20425	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LTQ54_20440	COG0745	RESPONSE REGULATOR receiver
LTQ54_20445	COG2205	protein histidine kinase activity
LTQ54_20450	COG1301	dicarboxylic acid transport
LTQ54_20455	COG4774	siderophore transport
LTQ54_20465	COG0811	peptide transport
LTQ54_20470	COG0811	peptide transport
LTQ54_20475	COG0848	biopolymer transport protein
LTQ54_20520	COG0803	Belongs to the bacterial solute-binding protein 9 family
LTQ54_20525	COG1121	(ABC) transporter
LTQ54_20530	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LTQ54_20530	COG1321	iron dependent repressor
LTQ54_20555	COG0534	Mate efflux family protein
LTQ54_20585	COG0318	PFAM AMP-dependent synthetase and ligase
LTQ54_20595	COG3118	belongs to the thioredoxin family
LTQ54_20600	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LTQ54_20620	COG2391	methyltransferase activity
LTQ54_20630	COG1328	CTP reductase activity
LTQ54_20635	COG0602	queuosine metabolic process
LTQ54_20645	COG0189	ligase activity
LTQ54_20645	COG4067	protein conserved in archaea
LTQ54_20650	COG0488	(ABC) transporter
LTQ54_20670	COG0725	ABC transporter, periplasmic molybdate-binding protein
LTQ54_20675	COG4149	molybdate abc transporter
LTQ54_20680	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LTQ54_20690	COG2203	Gaf domain
LTQ54_20690	COG3706	GGDEF domain
LTQ54_20690	COG4251	negative regulation of phosphorylation
LTQ54_20690	COG5001	Diguanylate cyclase
LTQ54_20700	COG3706	GGDEF domain
LTQ54_20715	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LTQ54_20720	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LTQ54_20745	COG3140	Belongs to the UPF0181 family
LTQ54_20750	COG3706	GGDEF domain
LTQ54_20775	COG0023	Translation Initiation Factor
LTQ54_20790	COG1181	Belongs to the D-alanine--D-alanine ligase family
LTQ54_20795	COG3266	domain, Protein
LTQ54_20800	COG0045	succinate-CoA ligase (ADP-forming) activity
LTQ54_20800	COG1042	CoA-binding domain protein
LTQ54_20800	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LTQ54_20805	COG0583	DNA-binding transcription factor activity
LTQ54_20810	COG1629	transport
LTQ54_20810	COG4771	TonB-dependent receptor
LTQ54_20840	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LTQ54_20845	COG1984	allophanate hydrolase subunit 2
LTQ54_20855	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LTQ54_20860	COG4181	ATPase activity
LTQ54_20870	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LTQ54_20875	COG5001	Diguanylate cyclase
LTQ54_20875	COG1716	ATPase activity
LTQ54_20885	COG0768	penicillin binding
LTQ54_20915	COG4533	DNA binding
LTQ54_20925	COG2050	protein possibly involved in aromatic compounds catabolism
LTQ54_20930	COG0501	Belongs to the peptidase M48B family
LTQ54_20940	COG2067	long-chain fatty acid transport protein
LTQ54_20945	COG2267	carboxylic ester hydrolase activity
LTQ54_20975	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
LTQ54_20985	COG2985	domain, Protein
LTQ54_21010	COG2272	Belongs to the type-B carboxylesterase lipase family
LTQ54_21015	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LTQ54_21030	COG0513	Belongs to the DEAD box helicase family
LTQ54_21045	COG0861	Integral membrane protein TerC family
LTQ54_21050	COG0737	Belongs to the 5'-nucleotidase family
LTQ54_21055	COG3593	DNA synthesis involved in DNA repair
LTQ54_21065	COG0583	DNA-binding transcription factor activity
LTQ54_21070	COG2116	formate transmembrane transporter activity
LTQ54_21075	COG2353	YceI-like domain
LTQ54_21080	COG3038	cytochrome b561
LTQ54_21095	COG2200	EAL domain
LTQ54_21120	COG0513	Belongs to the DEAD box helicase family
LTQ54_21125	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LTQ54_21130	COG0814	amino acid
LTQ54_21135	COG0840	transmembrane signaling receptor activity
LTQ54_21140	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LTQ54_21145	COG0784	Response regulator, receiver
LTQ54_21145	COG3437	response regulator, receiver
LTQ54_21160	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_21165	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LTQ54_21170	COG3706	GGDEF domain
LTQ54_21175	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LTQ54_21215	COG0509	glycine decarboxylation via glycine cleavage system
LTQ54_21235	COG0534	Mate efflux family protein
LTQ54_21260	COG1280	lysine exporter protein (LysE YggA)
LTQ54_21280	COG3227	Zinc metalloprotease (Elastase)
LTQ54_21305	COG2807	transmembrane transport
LTQ54_21315	COG1881	PFAM PEBP family protein
LTQ54_21320	COG5002	protein histidine kinase activity
LTQ54_21385	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LTQ54_21390	COG0784	Response regulator, receiver
LTQ54_21390	COG2205	protein histidine kinase activity
LTQ54_21395	COG1538	Outer membrane efflux protein
LTQ54_21400	COG1132	(ABC) transporter
LTQ54_21440	COG0840	transmembrane signaling receptor activity
LTQ54_21445	COG0405	Gamma-glutamyltransferase
LTQ54_21455	COG0641	radical SAM
LTQ54_21480	COG3300	MHYT domain
LTQ54_21480	COG5001	Diguanylate cyclase
LTQ54_21485	COG0583	DNA-binding transcription factor activity
LTQ54_21515	COG0714	Associated with various cellular activities
LTQ54_21525	COG3119	arylsulfatase activity
LTQ54_21530	COG3119	arylsulfatase activity
LTQ54_21545	COG3385	transposase activity
LTQ54_21550	COG2205	protein histidine kinase activity
LTQ54_21550	COG0784	Response regulator, receiver
LTQ54_21560	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
LTQ54_21575	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LTQ54_21580	COG2197	response regulator
LTQ54_21595	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
LTQ54_21625	COG0384	phenazine biosynthesis protein PhzF
LTQ54_21630	COG1280	lysine exporter protein (LysE YggA)
LTQ54_21640	COG5001	Diguanylate cyclase
LTQ54_21640	COG3300	MHYT domain
LTQ54_21660	COG3278	Belongs to the heme-copper respiratory oxidase family
LTQ54_21700	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LTQ54_21710	COG1012	belongs to the aldehyde dehydrogenase family
LTQ54_21720	COG0583	DNA-binding transcription factor activity
LTQ54_21730	COG0356	it plays a direct role in the translocation of protons across the membrane
LTQ54_21745	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LTQ54_21755	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LTQ54_21765	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LTQ54_21775	COG0583	DNA-binding transcription factor activity
LTQ54_21785	COG0784	Response regulator, receiver
LTQ54_21785	COG2205	protein histidine kinase activity
LTQ54_21790	COG0745	RESPONSE REGULATOR receiver
LTQ54_21805	COG4608	Belongs to the ABC transporter superfamily
LTQ54_21810	COG0444	Belongs to the ABC transporter superfamily
LTQ54_21815	COG4166	transmembrane transport
LTQ54_21820	COG4239	(ABC) transporter, permease
LTQ54_21825	COG4174	ABC transporter (Permease)
LTQ54_21830	COG4172	Belongs to the ABC transporter superfamily
LTQ54_21835	COG4239	(ABC) transporter, permease
LTQ54_21840	COG4174	ABC transporter (Permease)
LTQ54_21845	COG4166	transmembrane transport
LTQ54_21865	COG1869	D-ribose catabolic process
LTQ54_21870	COG1129	ABC transporter
LTQ54_21875	COG1172	Belongs to the binding-protein-dependent transport system permease family
LTQ54_21880	COG1879	ABC-type sugar transport system periplasmic component
LTQ54_21885	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LTQ54_21890	COG1609	Transcriptional regulator
LTQ54_21920	COG0583	DNA-binding transcription factor activity
LTQ54_21965	COG2026	Addiction module toxin, RelE StbE family
LTQ54_22010	COG0243	molybdopterin cofactor binding
LTQ54_22015	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LTQ54_22025	COG2223	nitrite transmembrane transporter activity
LTQ54_22030	COG2815	serine threonine protein kinase
LTQ54_22030	COG0515	serine threonine protein kinase
LTQ54_22035	COG1609	Transcriptional regulator
LTQ54_22040	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_22040	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_22045	COG1105	Belongs to the carbohydrate kinase PfkB family
LTQ54_22050	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_22050	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LTQ54_22050	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LTQ54_22085	COG0745	RESPONSE REGULATOR receiver
LTQ54_22105	COG0625	glutathione transferase activity
LTQ54_22120	COG2223	nitrite transmembrane transporter activity
LTQ54_22165	COG1879	ABC-type sugar transport system periplasmic component
LTQ54_22170	COG1803	Methylglyoxal synthase
LTQ54_22180	COG0210	DNA helicase
LTQ54_22185	COG1289	transmembrane transporter activity
LTQ54_22205	COG0583	DNA-binding transcription factor activity
LTQ54_22210	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LTQ54_22215	COG1328	CTP reductase activity
LTQ54_22245	COG1011	Hydrolase
LTQ54_22255	COG1454	alcohol dehydrogenase
LTQ54_22300	COG2433	Pfam Transposase IS66
LTQ54_22325	COG0515	serine threonine protein kinase
LTQ54_22325	COG2815	serine threonine protein kinase
LTQ54_22370	COG1063	alcohol dehydrogenase
LTQ54_22375	COG0156	8-amino-7-oxononanoate synthase activity
LTQ54_22380	COG2200	EAL domain
LTQ54_22400	COG0346	lactoylglutathione lyase activity
LTQ54_22420	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LTQ54_22425	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LTQ54_22440	COG0393	Putative heavy-metal-binding
LTQ54_22445	COG0739	heme binding
LTQ54_22470	COG1132	(ABC) transporter
LTQ54_22475	COG1132	(ABC) transporter
LTQ54_22480	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LTQ54_22500	COG1760	l-serine dehydratase
LTQ54_22505	COG3104	oligopeptide transport
LTQ54_22510	COG2375	cellular response to nickel ion
LTQ54_22515	COG1609	Transcriptional regulator
LTQ54_22520	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LTQ54_22525	COG3265	gluconokinase activity
LTQ54_22530	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LTQ54_22540	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LTQ54_22560	COG3842	ATPase activity
LTQ54_22565	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LTQ54_22570	COG1840	ABC-type Fe3 transport system, periplasmic component
LTQ54_22580	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LTQ54_22590	COG2885	chlorophyll binding
LTQ54_22595	COG1765	OsmC-like protein
LTQ54_22600	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LTQ54_22600	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LTQ54_22605	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LTQ54_22610	COG0569	domain protein
LTQ54_22615	COG0668	transmembrane transport
LTQ54_22625	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LTQ54_22630	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LTQ54_22635	COG3530	Putative quorum-sensing-regulated virulence factor
LTQ54_22650	COG0109	protoheme IX farnesyltransferase activity
LTQ54_22655	COG1612	heme a metabolic process
LTQ54_22675	COG1845	cytochrome c oxidase, subunit III
LTQ54_22685	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LTQ54_22690	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LTQ54_22690	COG1565	acr, cog1565
LTQ54_22695	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LTQ54_22700	COG1280	lysine exporter protein (LysE YggA)
LTQ54_22705	COG0179	Fumarylacetoacetate (FAA) hydrolase
LTQ54_22715	COG0443	Heat shock 70 kDa protein
LTQ54_22745	COG2827	Endonuclease containing a URI domain
LTQ54_22750	COG3132	Protein of unknown function, DUF480
LTQ54_22760	COG2926	Belongs to the UPF0265 family
LTQ54_22785	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LTQ54_22790	COG1151	hydroxylamine reductase activity
LTQ54_22805	COG1280	lysine exporter protein (LysE YggA)
LTQ54_22820	COG0531	amino acid
LTQ54_22835	COG4413	Urea transporter
LTQ54_22855	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LTQ54_22860	COG0402	S-adenosylhomocysteine deaminase activity
LTQ54_22865	COG1278	Cold shock
LTQ54_22870	COG3706	GGDEF domain
LTQ54_22885	COG0513	Belongs to the DEAD box helicase family
LTQ54_22905	COG2205	protein histidine kinase activity
LTQ54_22910	COG0745	RESPONSE REGULATOR receiver
LTQ54_22935	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LTQ54_22950	COG3037	sugar-specific permease SgaT UlaA
LTQ54_22955	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LTQ54_22960	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LTQ54_22965	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LTQ54_22970	COG2205	protein histidine kinase activity
LTQ54_22975	COG0745	RESPONSE REGULATOR receiver
LTQ54_22980	COG5001	Diguanylate cyclase
LTQ54_22990	COG5001	Diguanylate cyclase
LTQ54_23000	COG1131	(ABC) transporter
LTQ54_23020	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LTQ54_23020	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LTQ54_23030	COG0564	pseudouridine synthase activity
LTQ54_23040	COG2814	Major facilitator Superfamily
LTQ54_23050	COG2207	Transcriptional regulator
LTQ54_23050	COG3708	Transcriptional regulator
LTQ54_23095	COG4934	collagen metabolic process
LTQ54_23130	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_23165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LTQ54_23175	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LTQ54_23180	COG0737	Belongs to the 5'-nucleotidase family
LTQ54_23185	COG1454	alcohol dehydrogenase
LTQ54_23190	COG0235	Class ii aldolase
LTQ54_23200	COG1070	Carbohydrate kinase
LTQ54_23205	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
LTQ54_23210	COG0738	Major facilitator superfamily
LTQ54_23215	COG1349	DNA-binding transcription factor activity
LTQ54_23220	COG1136	(ABC) transporter
LTQ54_23225	COG0577	efflux transmembrane transporter activity
LTQ54_23235	COG2356	endonuclease I
LTQ54_23245	COG0583	DNA-binding transcription factor activity
LTQ54_23285	COG3833	ABC-type maltose transport systems, permease component
LTQ54_23290	COG1175	transmembrane transport
LTQ54_23300	COG3842	ATPase activity
LTQ54_23310	COG0840	transmembrane signaling receptor activity
LTQ54_23315	COG0714	Associated with various cellular activities
LTQ54_23330	COG2304	oxidoreductase activity
LTQ54_23335	COG2304	oxidoreductase activity
LTQ54_23350	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LTQ54_23355	COG0581	inorganic phosphate transmembrane transporter activity
LTQ54_23360	COG0573	inorganic phosphate transmembrane transporter activity
LTQ54_23370	COG0840	transmembrane signaling receptor activity
LTQ54_23405	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
LTQ54_23410	COG3240	lipase activity
LTQ54_23415	COG0513	Belongs to the DEAD box helicase family
LTQ54_23425	COG1376	ErfK ybiS ycfS ynhG family protein
LTQ54_23425	COG1388	LysM domain
LTQ54_23430	COG0813	purine-nucleoside phosphorylase activity
LTQ54_23460	COG1566	PFAM secretion protein HlyD family protein
LTQ54_23465	COG4720	Psort location CytoplasmicMembrane, score
LTQ54_23470	COG1122	ATPase activity
LTQ54_23485	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LTQ54_23490	COG1640	4-alpha-glucanotransferase
LTQ54_23495	COG0058	SHG alpha-glucan phosphorylase activity
LTQ54_23500	COG2909	trisaccharide binding
LTQ54_23515	COG1999	signal sequence binding
LTQ54_23525	COG1162	GTPase activity
LTQ54_23530	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LTQ54_23540	COG4566	intracellular signal transduction
LTQ54_23570	COG3258	Cytochrome c
LTQ54_23585	COG3976	FMN-binding domain protein
LTQ54_23585	COG1053	succinate dehydrogenase
LTQ54_23615	COG1523	belongs to the glycosyl hydrolase 13 family
LTQ54_23630	COG4580	involved in the transport of maltose and maltodextrins
LTQ54_23650	COG0204	Acyl-transferase
LTQ54_23655	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LTQ54_23665	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LTQ54_23670	COG4667	esterase of the alpha-beta hydrolase superfamily
LTQ54_23675	COG0753	catalase activity
LTQ54_23680	COG1929	Belongs to the glycerate kinase type-1 family
LTQ54_23690	COG3623	hexulose-6-phosphate isomerase
LTQ54_23695	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LTQ54_23700	COG0561	phosphatase activity
LTQ54_23755	COG0583	DNA-binding transcription factor activity
LTQ54_23775	COG0561	phosphatase activity
LTQ54_23805	COG0798	PFAM Bile acid sodium symporter
LTQ54_23810	COG0583	DNA-binding transcription factor activity
LTQ54_23820	COG3064	Membrane
LTQ54_23820	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
LTQ54_23820	COG1073	alpha beta
LTQ54_23825	COG2994	toxin metabolic process
LTQ54_23850	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LTQ54_23855	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LTQ54_23860	COG1349	DNA-binding transcription factor activity
LTQ54_23865	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LTQ54_23870	COG1028	Short-chain dehydrogenase reductase Sdr
LTQ54_23875	COG0583	DNA-binding transcription factor activity
LTQ54_23885	COG1794	racemase activity, acting on amino acids and derivatives
LTQ54_23905	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LTQ54_23920	COG0583	DNA-binding transcription factor activity
LTQ54_23925	COG2814	Major facilitator Superfamily
LTQ54_23930	COG0110	maltose O-acetyltransferase activity
LTQ54_23935	COG1609	Transcriptional regulator
LTQ54_23940	COG2723	6-phospho-beta-galactosidase activity
LTQ54_23980	COG2015	COG2015, Alkyl sulfatase and related hydrolases
LTQ54_23985	COG0583	DNA-binding transcription factor activity
LTQ54_23990	COG0534	Mate efflux family protein
LTQ54_23995	COG1024	Enoyl-CoA hydratase
LTQ54_24000	COG0300	oxidoreductase activity
LTQ54_24020	COG1720	tRNA m6t6A37 methyltransferase activity