locus-tag class description LTQ02_00035 PF03411 Penicillin-insensitive murein endopeptidase LTQ02_00045 PF12838 4Fe-4S dicluster domain LTQ02_00050 PF01136 Peptidase family U32 LTQ02_00050 PF16325 Peptidase family U32 C-terminal domain LTQ02_00055 PF04381 Putative exonuclease, RdgC LTQ02_00060 PF00072 Response regulator receiver domain LTQ02_00060 PF00486 Transcriptional regulatory protein, C terminal LTQ02_00065 PF11808 Phosphate regulon sensor protein PhoR LTQ02_00065 PF00989 PAS fold LTQ02_00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_00065 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_00070 PF12849 PBP superfamily domain LTQ02_00075 PF02541 Ppx/GppA phosphatase family LTQ02_00080 PF02503 Polyphosphate kinase middle domain LTQ02_00080 PF13090 Polyphosphate kinase C-terminal domain 2 LTQ02_00080 PF17941 Polyphosphate kinase C-terminal domain 1 LTQ02_00080 PF13089 Polyphosphate kinase N-terminal domain LTQ02_00085 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_00090 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_00095 PF00005 ABC transporter LTQ02_00100 PF01895 PhoU domain LTQ02_00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_00115 PF03466 LysR substrate binding domain LTQ02_00120 PF03932 CutC family LTQ02_00125 PF00578 AhpC/TSA family LTQ02_00125 PF10417 C-terminal domain of 1-Cys peroxiredoxin LTQ02_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_00130 PF03466 LysR substrate binding domain LTQ02_00150 PF00571 CBS domain LTQ02_00155 PF02547 Queuosine biosynthesis protein LTQ02_00160 PF01702 Queuine tRNA-ribosyltransferase LTQ02_00165 PF02699 Preprotein translocase subunit LTQ02_00170 PF13721 SecD export protein N-terminal TM region LTQ02_00170 PF07549 SecD/SecF GG Motif LTQ02_00170 PF02355 Protein export membrane protein LTQ02_00175 PF02355 Protein export membrane protein LTQ02_00175 PF07549 SecD/SecF GG Motif LTQ02_00180 PF00459 Inositol monophosphatase family LTQ02_00185 PF00588 SpoU rRNA Methylase family LTQ02_00190 PF02082 Transcriptional regulator LTQ02_00195 PF00266 Aminotransferase class-V LTQ02_00200 PF01592 NifU-like N terminal domain LTQ02_00205 PF01521 Iron-sulphur cluster biosynthesis LTQ02_00210 PF07743 HSCB C-terminal oligomerisation domain LTQ02_00210 PF00226 DnaJ domain LTQ02_00215 PF00012 Hsp70 protein LTQ02_00220 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_00225 PF04384 Iron-sulphur cluster assembly LTQ02_00230 PF12404 Peptidase LTQ02_00230 PF00883 Cytosol aminopeptidase family, catalytic domain LTQ02_00235 PF00334 Nucleoside diphosphate kinase LTQ02_00240 PF04055 Radical SAM superfamily LTQ02_00245 PF13464 Domain of unknown function (DUF4115) LTQ02_00250 PF04551 GcpE protein LTQ02_00255 PF13393 Histidyl-tRNA synthetase LTQ02_00255 PF03129 Anticodon binding domain LTQ02_00260 PF09976 Tetratricopeptide repeat-like domain LTQ02_00265 PF13360 PQQ-like domain LTQ02_00270 PF01926 50S ribosome-binding GTPase LTQ02_00270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LTQ02_00280 PF08448 PAS fold LTQ02_00280 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_00305 PF12399 Branched-chain amino acid ATP-binding cassette transporter LTQ02_00305 PF00005 ABC transporter LTQ02_00310 PF00005 ABC transporter LTQ02_00315 PF01774 UreD urease accessory protein LTQ02_00320 PF00547 Urease, gamma subunit LTQ02_00325 PF00699 Urease beta subunit LTQ02_00330 PF01979 Amidohydrolase family LTQ02_00330 PF00449 Urease alpha-subunit, N-terminal domain LTQ02_00335 PF02814 UreE urease accessory protein, N-terminal domain LTQ02_00335 PF05194 UreE urease accessory protein, C-terminal domain LTQ02_00345 PF01730 UreF LTQ02_00350 PF02492 CobW/HypB/UreG, nucleotide-binding domain LTQ02_00355 PF02601 Exonuclease VII, large subunit LTQ02_00355 PF13742 OB-fold nucleic acid binding domain LTQ02_00360 PF00571 CBS domain LTQ02_00360 PF00478 IMP dehydrogenase / GMP reductase domain LTQ02_00365 PF00958 GMP synthase C terminal domain LTQ02_00365 PF02540 NAD synthase LTQ02_00365 PF00117 Glutamine amidotransferase class-I LTQ02_00370 PF00704 Glycosyl hydrolases family 18 LTQ02_00370 PF06483 Chitinase C LTQ02_00380 PF01184 GPR1/FUN34/yaaH family LTQ02_00385 PF01235 Sodium:alanine symporter family LTQ02_00395 PF01553 Acyltransferase LTQ02_00415 PF18030 RimK PreATP-grasp domain LTQ02_00415 PF08443 RimK-like ATP-grasp domain LTQ02_00425 PF01668 SmpB protein LTQ02_00430 PF03364 Polyketide cyclase / dehydrase and lipid transport LTQ02_00435 PF03658 RnfH family Ubiquitin LTQ02_00445 PF04355 SmpA / OmlA family LTQ02_00450 PF02463 RecF/RecN/SMC N terminal domain LTQ02_00455 PF01513 ATP-NAD kinase LTQ02_00460 PF01025 GrpE LTQ02_00465 PF00375 Sodium:dicarboxylate symporter family LTQ02_00480 PF00684 DnaJ central domain LTQ02_00480 PF01556 DnaJ C terminal domain LTQ02_00480 PF00226 DnaJ domain LTQ02_00485 PF07963 Prokaryotic N-terminal methylation motif LTQ02_00485 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LTQ02_00510 PF03806 AbgT putative transporter family LTQ02_00515 PF01595 Cyclin M transmembrane N-terminal domain LTQ02_00515 PF03471 Transporter associated domain LTQ02_00515 PF00571 CBS domain LTQ02_00525 PF01464 Transglycosylase SLT domain LTQ02_00525 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_00530 PF02769 AIR synthase related protein, C-terminal domain LTQ02_00530 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LTQ02_00530 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LTQ02_00540 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LTQ02_00540 PF14602 Hexapeptide repeat of succinyl-transferase LTQ02_00545 PF00149 Calcineurin-like phosphoesterase LTQ02_00545 PF02872 5'-nucleotidase, C-terminal domain LTQ02_00550 PF01914 MarC family integral membrane protein LTQ02_00565 PF07130 YebG protein LTQ02_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_00570 PF03466 LysR substrate binding domain LTQ02_00605 PF00583 Acetyltransferase (GNAT) family LTQ02_00605 PF00696 Amino acid kinase family LTQ02_00615 PF03562 MltA specific insert domain LTQ02_00615 PF06725 3D domain LTQ02_00620 PF00899 ThiF family LTQ02_00625 PF02657 Fe-S metabolism associated domain LTQ02_00630 PF00266 Aminotransferase class-V LTQ02_00635 PF08546 Ketopantoate reductase PanE/ApbA C terminal LTQ02_00635 PF02558 Ketopantoate reductase PanE/ApbA LTQ02_00650 PF07690 Major Facilitator Superfamily LTQ02_00655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ02_00665 PF05175 Methyltransferase small domain LTQ02_00670 PF01722 BolA-like protein LTQ02_00675 PF11973 NQRA C-terminal domain LTQ02_00675 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LTQ02_00680 PF03116 NQR2, RnfD, RnfE family LTQ02_00685 PF04205 FMN-binding domain LTQ02_00690 PF02508 Rnf-Nqr subunit, membrane protein LTQ02_00695 PF02508 Rnf-Nqr subunit, membrane protein LTQ02_00700 PF00175 Oxidoreductase NAD-binding domain LTQ02_00700 PF00970 Oxidoreductase FAD-binding domain LTQ02_00700 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_00705 PF02424 ApbE family LTQ02_00710 PF04400 (Na+)-NQR maturation NqrM LTQ02_00715 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_00715 PF00072 Response regulator receiver domain LTQ02_00720 PF00817 impB/mucB/samB family LTQ02_00720 PF11798 IMS family HHH motif LTQ02_00720 PF11799 impB/mucB/samB family C-terminal domain LTQ02_00725 PF09382 RQC domain LTQ02_00725 PF00270 DEAD/DEAH box helicase LTQ02_00725 PF00271 Helicase conserved C-terminal domain LTQ02_00725 PF16124 RecQ zinc-binding LTQ02_00725 PF00570 HRDC domain LTQ02_00740 PF00209 Sodium:neurotransmitter symporter family LTQ02_00745 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LTQ02_00745 PF04055 Radical SAM superfamily LTQ02_00750 PF03099 Biotin/lipoate A/B protein ligase family LTQ02_00755 PF04359 Protein of unknown function (DUF493) LTQ02_00760 PF07943 Penicillin-binding protein 5, C-terminal domain LTQ02_00760 PF00768 D-alanyl-D-alanine carboxypeptidase LTQ02_00765 PF03330 Lytic transglycolase LTQ02_00765 PF05036 Sporulation related domain LTQ02_00770 PF01098 Cell cycle protein LTQ02_00775 PF00905 Penicillin binding protein transpeptidase domain LTQ02_00775 PF03717 Penicillin-binding Protein dimerisation domain LTQ02_00780 PF02590 Predicted SPOUT methyltransferase LTQ02_00790 PF06144 DNA polymerase III, delta subunit LTQ02_00790 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LTQ02_00795 PF04390 Lipopolysaccharide-assembly LTQ02_00800 PF08264 Anticodon-binding domain of tRNA LTQ02_00800 PF13603 Leucyl-tRNA synthetase, Domain 2 LTQ02_00800 PF00133 tRNA synthetases class I (I, L, M and V) LTQ02_00805 PF07295 Zinc-ribbon containing domain LTQ02_00810 PF00795 Carbon-nitrogen hydrolase LTQ02_00815 PF03471 Transporter associated domain LTQ02_00815 PF00571 CBS domain LTQ02_00820 PF02130 Uncharacterized protein family UPF0054 LTQ02_00825 PF02562 PhoH-like protein LTQ02_00830 PF04055 Radical SAM superfamily LTQ02_00830 PF01938 TRAM domain LTQ02_00830 PF00919 Uncharacterized protein family UPF0004 LTQ02_00835 PF01494 FAD binding domain LTQ02_00840 PF10282 Lactonase, 7-bladed beta-propeller LTQ02_00940 PF01926 50S ribosome-binding GTPase LTQ02_00940 PF06071 Protein of unknown function (DUF933) LTQ02_00945 PF01195 Peptidyl-tRNA hydrolase LTQ02_00950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LTQ02_00950 PF14572 Phosphoribosyl synthetase-associated domain LTQ02_00960 PF03550 Outer membrane lipoprotein LolB LTQ02_00965 PF01488 Shikimate / quinate 5-dehydrogenase LTQ02_00965 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LTQ02_00965 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LTQ02_00970 PF00472 RF-1 domain LTQ02_00970 PF03462 PCRF domain LTQ02_00975 PF17827 PrmC N-terminal domain LTQ02_00975 PF13847 Methyltransferase domain LTQ02_00980 PF04247 Invasion gene expression up-regulator, SirB LTQ02_00985 PF13369 Transglutaminase-like superfamily LTQ02_00990 PF00793 DAHP synthetase I family LTQ02_00995 PF02872 5'-nucleotidase, C-terminal domain LTQ02_00995 PF00149 Calcineurin-like phosphoesterase LTQ02_01000 PF04073 Aminoacyl-tRNA editing domain LTQ02_01005 PF01479 S4 domain LTQ02_01005 PF00849 RNA pseudouridylate synthase LTQ02_01010 PF01713 Smr domain LTQ02_01035 PF03173 Putative carbohydrate binding domain LTQ02_01035 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LTQ02_01035 PF00728 Glycosyl hydrolase family 20, catalytic domain LTQ02_01035 PF02838 Glycosyl hydrolase family 20, domain 2 LTQ02_01050 PF00403 Heavy-metal-associated domain LTQ02_01055 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ02_01060 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_01060 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_01075 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_01075 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_01100 PF00221 Aromatic amino acid lyase LTQ02_01105 PF00535 Glycosyl transferase family 2 LTQ02_01115 PF00501 AMP-binding enzyme LTQ02_01115 PF13193 AMP-binding enzyme C-terminal domain LTQ02_01125 PF00550 Phosphopantetheine attachment site LTQ02_01130 PF00550 Phosphopantetheine attachment site LTQ02_01155 PF04820 Tryptophan halogenase LTQ02_01190 PF13144 Chaperone for flagella basal body P-ring formation LTQ02_01195 PF00072 Response regulator receiver domain LTQ02_01195 PF01584 CheW-like domain LTQ02_01200 PF01739 CheR methyltransferase, SAM binding domain LTQ02_01200 PF03705 CheR methyltransferase, all-alpha domain LTQ02_01205 PF00460 Flagella basal body rod protein LTQ02_01210 PF00460 Flagella basal body rod protein LTQ02_01210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ02_01215 PF03963 Flagellar hook capping protein - N-terminal region LTQ02_01215 PF13861 FlgD Tudor-like domain LTQ02_01215 PF13860 FlgD Ig-like domain LTQ02_01220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ02_01220 PF00460 Flagella basal body rod protein LTQ02_01220 PF07559 Flagellar basal body protein FlaE LTQ02_01225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ02_01225 PF00460 Flagella basal body rod protein LTQ02_01230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ02_01230 PF00460 Flagella basal body rod protein LTQ02_01235 PF02107 Flagellar L-ring protein LTQ02_01240 PF02119 Flagellar P-ring protein LTQ02_01245 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LTQ02_01245 PF10135 Rod binding protein LTQ02_01250 PF07196 Flagellin hook IN motif LTQ02_01250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LTQ02_01260 PF00700 Bacterial flagellin C-terminal helical region LTQ02_01260 PF07196 Flagellin hook IN motif LTQ02_01260 PF00669 Bacterial flagellin N-terminal helical region LTQ02_01265 PF00669 Bacterial flagellin N-terminal helical region LTQ02_01265 PF07196 Flagellin hook IN motif LTQ02_01265 PF00700 Bacterial flagellin C-terminal helical region LTQ02_01270 PF00700 Bacterial flagellin C-terminal helical region LTQ02_01270 PF07196 Flagellin hook IN motif LTQ02_01270 PF00669 Bacterial flagellin N-terminal helical region LTQ02_01275 PF03646 FlaG protein LTQ02_01280 PF07196 Flagellin hook IN motif LTQ02_01280 PF07195 Flagellar hook-associated protein 2 C-terminus LTQ02_01280 PF02465 Flagellar hook-associated protein 2 N-terminus LTQ02_01290 PF02561 Flagellar protein FliS LTQ02_01295 PF06490 Flagellar regulatory protein FleQ LTQ02_01295 PF02954 Bacterial regulatory protein, Fis family LTQ02_01295 PF00158 Sigma-54 interaction domain LTQ02_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_01300 PF13188 PAS domain LTQ02_01300 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_01305 PF02954 Bacterial regulatory protein, Fis family LTQ02_01305 PF00072 Response regulator receiver domain LTQ02_01305 PF00158 Sigma-54 interaction domain LTQ02_01310 PF02049 Flagellar hook-basal body complex protein FliE LTQ02_01315 PF01514 Secretory protein of YscJ/FliF family LTQ02_01315 PF08345 Flagellar M-ring protein C-terminal LTQ02_01320 PF01706 FliG C-terminal domain LTQ02_01320 PF14841 FliG middle domain LTQ02_01320 PF14842 FliG N-terminal domain LTQ02_01330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_01330 PF18269 T3SS EscN ATPase C-terminal domain LTQ02_01350 PF02154 Flagellar motor switch protein FliM LTQ02_01350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LTQ02_01355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LTQ02_01360 PF04347 Flagellar biosynthesis protein, FliO LTQ02_01365 PF00813 FliP family LTQ02_01370 PF01313 Bacterial export proteins, family 3 LTQ02_01375 PF01311 Bacterial export proteins, family 1 LTQ02_01380 PF01312 FlhB HrpN YscU SpaS Family LTQ02_01385 PF00771 FHIPEP family LTQ02_01390 PF00448 SRP54-type protein, GTPase domain LTQ02_01395 PF10609 NUBPL iron-transfer P-loop NTPase LTQ02_01400 PF04539 Sigma-70 region 3 LTQ02_01400 PF04545 Sigma-70, region 4 LTQ02_01400 PF04542 Sigma-70 region 2 LTQ02_01405 PF00072 Response regulator receiver domain LTQ02_01410 PF04344 Chemotaxis phosphatase, CheZ LTQ02_01415 PF01627 Hpt domain LTQ02_01415 PF01584 CheW-like domain LTQ02_01415 PF00072 Response regulator receiver domain LTQ02_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_01415 PF02895 Signal transducing histidine kinase, homodimeric domain LTQ02_01420 PF00072 Response regulator receiver domain LTQ02_01420 PF01339 CheB methylesterase LTQ02_01425 PF13614 AAA domain LTQ02_01435 PF01584 CheW-like domain LTQ02_01445 PF00005 ABC transporter LTQ02_01450 PF03379 CcmB protein LTQ02_01455 PF01578 Cytochrome C assembly protein LTQ02_01460 PF04995 Heme exporter protein D (CcmD) LTQ02_01465 PF03100 CcmE LTQ02_01470 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LTQ02_01470 PF01578 Cytochrome C assembly protein LTQ02_01475 PF08534 Redoxin LTQ02_01480 PF03918 Cytochrome C biogenesis protein LTQ02_01485 PF03918 Cytochrome C biogenesis protein LTQ02_01490 PF04333 MlaA lipoprotein LTQ02_01495 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ02_01500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ02_01510 PF04542 Sigma-70 region 2 LTQ02_01510 PF08281 Sigma-70, region 4 LTQ02_01515 PF02803 Thiolase, C-terminal domain LTQ02_01515 PF00108 Thiolase, N-terminal domain LTQ02_01520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LTQ02_01520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LTQ02_01520 PF00378 Enoyl-CoA hydratase/isomerase LTQ02_01525 PF00675 Insulinase (Peptidase family M16) LTQ02_01525 PF05193 Peptidase M16 inactive domain LTQ02_01525 PF16187 Middle or third domain of peptidase_M16 LTQ02_01530 PF00300 Histidine phosphatase superfamily (branch 1) LTQ02_01535 PF01713 Smr domain LTQ02_01540 PF05175 Methyltransferase small domain LTQ02_01545 PF01810 LysE type translocator LTQ02_01550 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LTQ02_01555 PF00072 Response regulator receiver domain LTQ02_01555 PF00486 Transcriptional regulatory protein, C terminal LTQ02_01560 PF00672 HAMP domain LTQ02_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_01560 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_01565 PF01547 Bacterial extracellular solute-binding protein LTQ02_01570 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_01575 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_01580 PF00005 ABC transporter LTQ02_01580 PF17912 MalK OB fold domain LTQ02_01580 PF03459 TOBE domain LTQ02_01585 PF16360 GTP-binding GTPase Middle Region LTQ02_01585 PF13167 GTP-binding GTPase N-terminal LTQ02_01585 PF01926 50S ribosome-binding GTPase LTQ02_01590 PF03060 Nitronate monooxygenase LTQ02_01590 PF00698 Acyl transferase domain LTQ02_01595 PF00698 Acyl transferase domain LTQ02_01595 PF00550 Phosphopantetheine attachment site LTQ02_01595 PF16197 Ketoacyl-synthetase C-terminal extension LTQ02_01595 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_01595 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_01595 PF08659 KR domain LTQ02_01595 PF14765 Polyketide synthase dehydratase LTQ02_01605 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_01605 PF00550 Phosphopantetheine attachment site LTQ02_01605 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_01605 PF14765 Polyketide synthase dehydratase LTQ02_01605 PF16197 Ketoacyl-synthetase C-terminal extension LTQ02_01605 PF00698 Acyl transferase domain LTQ02_01605 PF08659 KR domain LTQ02_01610 PF01648 4'-phosphopantetheinyl transferase superfamily LTQ02_01620 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_01625 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ02_01630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_01640 PF00072 Response regulator receiver domain LTQ02_01640 PF00158 Sigma-54 interaction domain LTQ02_01640 PF02954 Bacterial regulatory protein, Fis family LTQ02_01645 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_01645 PF02743 Cache domain LTQ02_01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_01650 PF05697 Bacterial trigger factor protein (TF) LTQ02_01650 PF05698 Bacterial trigger factor protein (TF) C-terminus LTQ02_01655 PF00574 Clp protease LTQ02_01660 PF07724 AAA domain (Cdc48 subfamily) LTQ02_01660 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ02_01660 PF06689 ClpX C4-type zinc finger LTQ02_01665 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ02_01665 PF02190 ATP-dependent protease La (LON) substrate-binding domain LTQ02_01665 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_01670 PF00216 Bacterial DNA-binding protein LTQ02_01675 PF13145 PPIC-type PPIASE domain LTQ02_01695 PF13286 Phosphohydrolase-associated domain LTQ02_01695 PF01966 HD domain LTQ02_01705 PF00155 Aminotransferase class I and II LTQ02_01710 PF00425 chorismate binding enzyme LTQ02_01715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ02_01715 PF16582 Middle domain of thiamine pyrophosphate LTQ02_01715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ02_01720 PF00561 alpha/beta hydrolase fold LTQ02_01725 PF00378 Enoyl-CoA hydratase/isomerase LTQ02_01730 PF13378 Enolase C-terminal domain-like LTQ02_01745 PF03601 Conserved hypothetical protein 698 LTQ02_01765 PF01048 Phosphorylase superfamily LTQ02_01820 PF00873 AcrB/AcrD/AcrF family LTQ02_01830 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_01835 PF01037 Lrp/AsnC ligand binding domain LTQ02_01835 PF13404 AsnC-type helix-turn-helix domain LTQ02_01855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ02_01870 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_01880 PF03466 LysR substrate binding domain LTQ02_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_01910 PF01693 Caulimovirus viroplasmin LTQ02_01915 PF13439 Glycosyltransferase Family 4 LTQ02_01915 PF00534 Glycosyl transferases group 1 LTQ02_01920 PF00535 Glycosyl transferase family 2 LTQ02_01955 PF00255 Glutathione peroxidase LTQ02_01960 PF03109 ABC1 family LTQ02_01975 PF00072 Response regulator receiver domain LTQ02_01975 PF02954 Bacterial regulatory protein, Fis family LTQ02_01975 PF00158 Sigma-54 interaction domain LTQ02_01985 PF01645 Conserved region in glutamate synthase LTQ02_02000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02000 PF03466 LysR substrate binding domain LTQ02_02005 PF00376 MerR family regulatory protein LTQ02_02005 PF09278 MerR, DNA binding LTQ02_02010 PF04794 YdjC-like protein LTQ02_02015 PF11975 Family 4 glycosyl hydrolase C-terminal domain LTQ02_02015 PF02056 Family 4 glycosyl hydrolase LTQ02_02020 PF03466 LysR substrate binding domain LTQ02_02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02045 PF00884 Sulfatase LTQ02_02050 PF00356 Bacterial regulatory proteins, lacI family LTQ02_02065 PF07690 Major Facilitator Superfamily LTQ02_02070 PF00474 Sodium:solute symporter family LTQ02_02075 PF03315 Serine dehydratase beta chain LTQ02_02075 PF03313 Serine dehydratase alpha chain LTQ02_02080 PF01037 Lrp/AsnC ligand binding domain LTQ02_02085 PF01810 LysE type translocator LTQ02_02090 PF13192 Thioredoxin domain LTQ02_02090 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_02095 PF00578 AhpC/TSA family LTQ02_02095 PF10417 C-terminal domain of 1-Cys peroxiredoxin LTQ02_02105 PF00860 Permease family LTQ02_02110 PF05036 Sporulation related domain LTQ02_02110 PF03330 Lytic transglycolase LTQ02_02115 PF02833 DHHA2 domain LTQ02_02115 PF01368 DHH family LTQ02_02150 PF03466 LysR substrate binding domain LTQ02_02150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02160 PF00892 EamA-like transporter family LTQ02_02165 PF02311 AraC-like ligand binding domain LTQ02_02165 PF12833 Helix-turn-helix domain LTQ02_02175 PF01425 Amidase LTQ02_02185 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ02_02185 PF11412 Disulphide bond corrector protein DsbC LTQ02_02190 PF00085 Thioredoxin LTQ02_02200 PF13382 Adenine deaminase C-terminal domain LTQ02_02200 PF01979 Amidohydrolase family LTQ02_02215 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_02215 PF09286 Pro-kumamolisin, activation domain LTQ02_02225 PF07715 TonB-dependent Receptor Plug Domain LTQ02_02225 PF00593 TonB dependent receptor LTQ02_02235 PF01032 FecCD transport family LTQ02_02240 PF01497 Periplasmic binding protein LTQ02_02245 PF00005 ABC transporter LTQ02_02255 PF01979 Amidohydrolase family LTQ02_02265 PF10114 Sensory domain found in PocR LTQ02_02265 PF12833 Helix-turn-helix domain LTQ02_02270 PF08212 Lipocalin-like domain LTQ02_02280 PF08803 Putative mono-oxygenase ydhR LTQ02_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02285 PF03466 LysR substrate binding domain LTQ02_02290 PF17932 Tetracyclin repressor-like, C-terminal domain LTQ02_02290 PF00440 Bacterial regulatory proteins, tetR family LTQ02_02300 PF00873 AcrB/AcrD/AcrF family LTQ02_02305 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LTQ02_02305 PF06481 COX Aromatic Rich Motif LTQ02_02315 PF00510 Cytochrome c oxidase subunit III LTQ02_02320 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LTQ02_02325 PF01040 UbiA prenyltransferase family LTQ02_02335 PF14864 Alkyl sulfatase C-terminal LTQ02_02335 PF00753 Metallo-beta-lactamase superfamily LTQ02_02335 PF14863 Alkyl sulfatase dimerisation LTQ02_02350 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ02_02355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02355 PF03466 LysR substrate binding domain LTQ02_02360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_02365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ02_02390 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ02_02395 PF01323 DSBA-like thioredoxin domain LTQ02_02410 PF02885 Glycosyl transferase family, helical bundle domain LTQ02_02410 PF00591 Glycosyl transferase family, a/b domain LTQ02_02425 PF00571 CBS domain LTQ02_02425 PF01743 Poly A polymerase head domain LTQ02_02430 PF01554 MatE LTQ02_02435 PF00403 Heavy-metal-associated domain LTQ02_02440 PF01048 Phosphorylase superfamily LTQ02_02450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_02450 PF00672 HAMP domain LTQ02_02455 PF01230 HIT domain LTQ02_02470 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LTQ02_02470 PF13036 Peptidoglycan-synthase activator LpoB LTQ02_02480 PF05728 Uncharacterised protein family (UPF0227) LTQ02_02485 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_02500 PF17757 UvrB interaction domain LTQ02_02500 PF00270 DEAD/DEAH box helicase LTQ02_02500 PF02559 CarD-like/TRCF domain LTQ02_02500 PF03461 TRCF domain LTQ02_02500 PF00271 Helicase conserved C-terminal domain LTQ02_02510 PF12704 MacB-like periplasmic core domain LTQ02_02510 PF02687 FtsX-like permease family LTQ02_02515 PF00005 ABC transporter LTQ02_02520 PF02687 FtsX-like permease family LTQ02_02520 PF12704 MacB-like periplasmic core domain LTQ02_02530 PF03772 Competence protein LTQ02_02530 PF00753 Metallo-beta-lactamase superfamily LTQ02_02535 PF00664 ABC transporter transmembrane region LTQ02_02535 PF00005 ABC transporter LTQ02_02540 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LTQ02_02545 PF03966 Trm112p-like protein LTQ02_02550 PF02348 Cytidylyltransferase LTQ02_02555 PF02224 Cytidylate kinase LTQ02_02560 PF00575 S1 RNA binding domain LTQ02_02565 PF00216 Bacterial DNA-binding protein LTQ02_02570 PF06305 Lipopolysaccharide assembly protein A domain LTQ02_02575 PF18073 Rubredoxin metal binding domain LTQ02_02580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LTQ02_02585 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LTQ02_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_02595 PF03466 LysR substrate binding domain LTQ02_02605 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LTQ02_02605 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LTQ02_02610 PF01037 Lrp/AsnC ligand binding domain LTQ02_02615 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LTQ02_02615 PF09397 Ftsk gamma domain LTQ02_02615 PF01580 FtsK/SpoIIIE family LTQ02_02615 PF17854 FtsK alpha domain LTQ02_02620 PF03548 Outer membrane lipoprotein carrier protein LolA LTQ02_02625 PF16193 AAA C-terminal domain LTQ02_02625 PF12002 MgsA AAA+ ATPase C terminal LTQ02_02625 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_02630 PF02403 Seryl-tRNA synthetase N-terminal domain LTQ02_02630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ02_02635 PF01258 Prokaryotic dksA/traR C4-type zinc finger LTQ02_02640 PF00202 Aminotransferase class-III LTQ02_02645 PF06968 Biotin and Thiamin Synthesis associated domain LTQ02_02645 PF04055 Radical SAM superfamily LTQ02_02650 PF00155 Aminotransferase class I and II LTQ02_02655 PF08241 Methyltransferase domain LTQ02_02670 PF01435 Peptidase family M48 LTQ02_02675 PF08328 Adenylosuccinate lyase C-terminal LTQ02_02675 PF00206 Lyase LTQ02_02680 PF04356 Protein of unknown function (DUF489) LTQ02_02695 PF00294 pfkB family carbohydrate kinase LTQ02_02700 PF00816 H-NS histone family LTQ02_02705 PF03553 Na+/H+ antiporter family LTQ02_02710 PF01634 ATP phosphoribosyltransferase LTQ02_02710 PF08029 HisG, C-terminal domain LTQ02_02715 PF00815 Histidinol dehydrogenase LTQ02_02720 PF00155 Aminotransferase class I and II LTQ02_02725 PF00475 Imidazoleglycerol-phosphate dehydratase LTQ02_02725 PF08645 Polynucleotide kinase 3 phosphatase LTQ02_02730 PF00117 Glutamine amidotransferase class-I LTQ02_02735 PF00977 Histidine biosynthesis protein LTQ02_02775 PF00012 Hsp70 protein LTQ02_02825 PF12462 DNA helicase IV / RNA helicase N terminal LTQ02_02825 PF00580 UvrD/REP helicase N-terminal domain LTQ02_02825 PF13361 UvrD-like helicase C-terminal domain LTQ02_02875 PF00977 Histidine biosynthesis protein LTQ02_02880 PF01502 Phosphoribosyl-AMP cyclohydrolase LTQ02_02880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LTQ02_02885 PF02810 SEC-C motif LTQ02_02890 PF00563 EAL domain LTQ02_02890 PF08668 HDOD domain LTQ02_02895 PF00149 Calcineurin-like phosphoesterase LTQ02_02900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LTQ02_02905 PF09190 DALR domain LTQ02_02905 PF01406 tRNA synthetases class I (C) catalytic domain LTQ02_02910 PF00265 Thymidine kinase LTQ02_02935 PF01226 Formate/nitrite transporter LTQ02_02940 PF03649 Uncharacterised protein family (UPF0014) LTQ02_02945 PF06796 Periplasmic nitrate reductase protein NapE LTQ02_02950 PF03264 NapC/NirT cytochrome c family, N-terminal region LTQ02_02955 PF00384 Molybdopterin oxidoreductase LTQ02_02955 PF18364 Molybdopterin oxidoreductase N-terminal domain LTQ02_02955 PF01568 Molydopterin dinucleotide binding domain LTQ02_02965 PF01368 DHH family LTQ02_02965 PF02833 DHHA2 domain LTQ02_02980 PF00005 ABC transporter LTQ02_02985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_02985 PF00005 ABC transporter LTQ02_02990 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_02990 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ02_02995 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_03000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_03005 PF02954 Bacterial regulatory protein, Fis family LTQ02_03005 PF00158 Sigma-54 interaction domain LTQ02_03010 PF04012 PspA/IM30 family LTQ02_03015 PF06667 Phage shock protein B LTQ02_03020 PF04024 PspC domain LTQ02_03025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_03025 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_03030 PF13533 Biotin-lipoyl like LTQ02_03040 PF03352 Methyladenine glycosylase LTQ02_03055 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ02_03060 PF13091 PLD-like domain LTQ02_03060 PF13396 Phospholipase_D-nuclease N-terminal LTQ02_03065 PF00209 Sodium:neurotransmitter symporter family LTQ02_03070 PF12729 Four helix bundle sensory module for signal transduction LTQ02_03070 PF00672 HAMP domain LTQ02_03070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_03075 PF00849 RNA pseudouridylate synthase LTQ02_03080 PF01170 Putative RNA methylase family UPF0020 LTQ02_03080 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ02_03080 PF02926 THUMP domain LTQ02_03085 PF01066 CDP-alcohol phosphatidyltransferase LTQ02_03090 PF00005 ABC transporter LTQ02_03095 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_03110 PF06945 Protein of unknown function (DUF1289) LTQ02_03120 PF01910 Thiamine-binding protein LTQ02_03135 PF01810 LysE type translocator LTQ02_03145 PF18027 Cytosolic carboxypeptidase N-terminal domain LTQ02_03145 PF00246 Zinc carboxypeptidase LTQ02_03165 PF00571 CBS domain LTQ02_03165 PF00005 ABC transporter LTQ02_03170 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_03175 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LTQ02_03185 PF03466 LysR substrate binding domain LTQ02_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_03190 PF08787 Alginate lyase LTQ02_03195 PF04403 Paraquat-inducible protein A LTQ02_03200 PF02470 MlaD protein LTQ02_03245 PF13302 Acetyltransferase (GNAT) domain LTQ02_03270 PF01386 Ribosomal L25p family LTQ02_03275 PF00535 Glycosyl transferase family 2 LTQ02_03275 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LTQ02_03280 PF09335 SNARE associated Golgi protein LTQ02_03295 PF02472 Biopolymer transport protein ExbD/TolR LTQ02_03300 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_03305 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_03315 PF07715 TonB-dependent Receptor Plug Domain LTQ02_03320 PF06472 ABC transporter transmembrane region 2 LTQ02_03320 PF00005 ABC transporter LTQ02_03325 PF00675 Insulinase (Peptidase family M16) LTQ02_03325 PF05193 Peptidase M16 inactive domain LTQ02_03335 PF00672 HAMP domain LTQ02_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_03335 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_03340 PF00486 Transcriptional regulatory protein, C terminal LTQ02_03340 PF00072 Response regulator receiver domain LTQ02_03350 PF04851 Type III restriction enzyme, res subunit LTQ02_03350 PF00271 Helicase conserved C-terminal domain LTQ02_03355 PF01479 S4 domain LTQ02_03355 PF00849 RNA pseudouridylate synthase LTQ02_03360 PF07690 Major Facilitator Superfamily LTQ02_03370 PF13460 NAD(P)H-binding LTQ02_03370 PF11066 Protein of unknown function (DUF2867) LTQ02_03375 PF01554 MatE LTQ02_03380 PF00005 ABC transporter LTQ02_03395 PF06965 Na+/H+ antiporter 1 LTQ02_03410 PF00440 Bacterial regulatory proteins, tetR family LTQ02_03410 PF16295 Tetracyclin repressor-like, C-terminal domain LTQ02_03415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LTQ02_03415 PF02770 Acyl-CoA dehydrogenase, middle domain LTQ02_03415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LTQ02_03415 PF09317 Domain of unknown function (DUF1974) LTQ02_03420 PF07055 Enoyl reductase FAD binding domain LTQ02_03420 PF12241 Trans-2-enoyl-CoA reductase catalytic region LTQ02_03420 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LTQ02_03425 PF02080 TrkA-C domain LTQ02_03425 PF06826 Predicted Permease Membrane Region LTQ02_03430 PF00462 Glutaredoxin LTQ02_03435 PF00465 Iron-containing alcohol dehydrogenase LTQ02_03440 PF01380 SIS domain LTQ02_03440 PF01418 Helix-turn-helix domain, rpiR family LTQ02_03445 PF00282 Pyridoxal-dependent decarboxylase conserved domain LTQ02_03455 PF03956 Lysine exporter LysO LTQ02_03465 PF04993 TfoX N-terminal domain LTQ02_03465 PF04994 TfoX C-terminal domain LTQ02_03475 PF02954 Bacterial regulatory protein, Fis family LTQ02_03475 PF00158 Sigma-54 interaction domain LTQ02_03475 PF00072 Response regulator receiver domain LTQ02_03480 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_03480 PF00989 PAS fold LTQ02_03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_03490 PF00266 Aminotransferase class-V LTQ02_03500 PF07694 5TMR of 5TMR-LYT LTQ02_03500 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_03505 PF12833 Helix-turn-helix domain LTQ02_03505 PF10114 Sensory domain found in PocR LTQ02_03515 PF03475 3-alpha domain LTQ02_03515 PF03473 MOSC domain LTQ02_03520 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ02_03520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ02_03520 PF14579 Helix-hairpin-helix motif LTQ02_03520 PF02811 PHP domain LTQ02_03520 PF00929 Exonuclease LTQ02_03535 PF00155 Aminotransferase class I and II LTQ02_03540 PF00672 HAMP domain LTQ02_03540 PF01966 HD domain LTQ02_03550 PF00392 Bacterial regulatory proteins, gntR family LTQ02_03550 PF00155 Aminotransferase class I and II LTQ02_03570 PF00152 tRNA synthetases class II (D, K and N) LTQ02_03570 PF01336 OB-fold nucleic acid binding domain LTQ02_03575 PF01740 STAS domain LTQ02_03575 PF00916 Sulfate permease family LTQ02_03580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_03580 PF02743 Cache domain LTQ02_03580 PF00672 HAMP domain LTQ02_03585 PF01568 Molydopterin dinucleotide binding domain LTQ02_03585 PF00384 Molybdopterin oxidoreductase LTQ02_03590 PF03466 LysR substrate binding domain LTQ02_03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_03595 PF02634 FdhD/NarQ family LTQ02_03605 PF03222 Tryptophan/tyrosine permease family LTQ02_03610 PF03313 Serine dehydratase alpha chain LTQ02_03610 PF03315 Serine dehydratase beta chain LTQ02_03615 PF03222 Tryptophan/tyrosine permease family LTQ02_03620 PF00293 NUDIX domain LTQ02_03630 PF09308 LuxQ, periplasmic LTQ02_03630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_03630 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_03630 PF00072 Response regulator receiver domain LTQ02_03635 PF04715 Anthranilate synthase component I, N terminal region LTQ02_03635 PF00425 chorismate binding enzyme LTQ02_03650 PF04317 YcjX-like family, DUF463 LTQ02_03655 PF05128 Domain of unknown function (DUF697) LTQ02_03660 PF00158 Sigma-54 interaction domain LTQ02_03660 PF18024 Helix-turn-helix domain LTQ02_03665 PF13302 Acetyltransferase (GNAT) domain LTQ02_03680 PF00012 Hsp70 protein LTQ02_03685 PF00012 Hsp70 protein LTQ02_03695 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_03715 PF00486 Transcriptional regulatory protein, C terminal LTQ02_03745 PF04408 Helicase associated domain (HA2) LTQ02_03745 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LTQ02_03745 PF00271 Helicase conserved C-terminal domain LTQ02_03745 PF11898 Domain of unknown function (DUF3418) LTQ02_03745 PF00270 DEAD/DEAH box helicase LTQ02_03785 PF00072 Response regulator receiver domain LTQ02_03785 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_03790 PF01409 tRNA synthetases class II core domain (F) LTQ02_03790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LTQ02_03795 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LTQ02_03795 PF01588 Putative tRNA binding domain LTQ02_03795 PF03147 Ferredoxin-fold anticodon binding domain LTQ02_03795 PF03484 tRNA synthetase B5 domain LTQ02_03795 PF03483 B3/4 domain LTQ02_03810 PF00561 alpha/beta hydrolase fold LTQ02_03850 PF01734 Patatin-like phospholipase LTQ02_03865 PF01227 GTP cyclohydrolase I LTQ02_03870 PF02152 Dihydroneopterin aldolase LTQ02_03875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ02_03880 PF04231 Endonuclease I LTQ02_03895 PF03180 NLPA lipoprotein LTQ02_03900 PF01738 Dienelactone hydrolase family LTQ02_03910 PF01037 Lrp/AsnC ligand binding domain LTQ02_03915 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ02_03925 PF00892 EamA-like transporter family LTQ02_03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_03935 PF03466 LysR substrate binding domain LTQ02_03955 PF02627 Carboxymuconolactone decarboxylase family LTQ02_03960 PF12833 Helix-turn-helix domain LTQ02_03965 PF01156 Inosine-uridine preferring nucleoside hydrolase LTQ02_03970 PF12805 FUSC-like inner membrane protein yccS LTQ02_03985 PF03824 High-affinity nickel-transport protein LTQ02_04000 PF00486 Transcriptional regulatory protein, C terminal LTQ02_04000 PF00072 Response regulator receiver domain LTQ02_04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_04005 PF07689 KaiB domain LTQ02_04005 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_04020 PF02001 Protein of unknown function DUF134 LTQ02_04040 PF04973 Nicotinamide mononucleotide transporter LTQ02_04045 PF01048 Phosphorylase superfamily LTQ02_04060 PF00216 Bacterial DNA-binding protein LTQ02_04090 PF00672 HAMP domain LTQ02_04090 PF17200 Single Cache domain 2 LTQ02_04090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_04100 PF05922 Peptidase inhibitor I9 LTQ02_04100 PF00082 Subtilase family LTQ02_04100 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_04105 PF03466 LysR substrate binding domain LTQ02_04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04120 PF00072 Response regulator receiver domain LTQ02_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_04125 PF00155 Aminotransferase class I and II LTQ02_04130 PF00392 Bacterial regulatory proteins, gntR family LTQ02_04130 PF00155 Aminotransferase class I and II LTQ02_04145 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_04155 PF00216 Bacterial DNA-binding protein LTQ02_04190 PF00034 Cytochrome c LTQ02_04200 PF05724 Thiopurine S-methyltransferase (TPMT) LTQ02_04215 PF04172 LrgB-like family LTQ02_04220 PF03788 LrgA family LTQ02_04225 PF08411 Exonuclease C-terminal LTQ02_04225 PF00929 Exonuclease LTQ02_04250 PF04116 Fatty acid hydroxylase superfamily LTQ02_04290 PF07969 Amidohydrolase family LTQ02_04305 PF03440 Aerolysin/Pertussis toxin (APT) domain LTQ02_04305 PF01117 Aerolysin toxin LTQ02_04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04315 PF03466 LysR substrate binding domain LTQ02_04320 PF00248 Aldo/keto reductase family LTQ02_04325 PF03928 Haem-degrading LTQ02_04330 PF00375 Sodium:dicarboxylate symporter family LTQ02_04335 PF13460 NAD(P)H-binding LTQ02_04345 PF01613 Flavin reductase like domain LTQ02_04350 PF02277 Phosphoribosyltransferase LTQ02_04355 PF02654 Cobalamin-5-phosphate synthase LTQ02_04360 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LTQ02_04375 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LTQ02_04380 PF01032 FecCD transport family LTQ02_04385 PF00005 ABC transporter LTQ02_04395 PF00107 Zinc-binding dehydrogenase LTQ02_04395 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04400 PF03466 LysR substrate binding domain LTQ02_04415 PF00155 Aminotransferase class I and II LTQ02_04415 PF00392 Bacterial regulatory proteins, gntR family LTQ02_04420 PF01654 Cytochrome bd terminal oxidase subunit I LTQ02_04425 PF02322 Cytochrome bd terminal oxidase subunit II LTQ02_04445 PF03466 LysR substrate binding domain LTQ02_04445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04470 PF00583 Acetyltransferase (GNAT) family LTQ02_04480 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_04490 PF07690 Major Facilitator Superfamily LTQ02_04505 PF01863 Protein of unknown function DUF45 LTQ02_04510 PF05971 RNA methyltransferase LTQ02_04520 PF04204 Homoserine O-succinyltransferase LTQ02_04535 PF07687 Peptidase dimerisation domain LTQ02_04535 PF01546 Peptidase family M20/M25/M40 LTQ02_04590 PF03466 LysR substrate binding domain LTQ02_04590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04630 PF00491 Arginase family LTQ02_04640 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_04650 PF00106 short chain dehydrogenase LTQ02_04690 PF04002 RadC-like JAB domain LTQ02_04700 PF00075 RNase H LTQ02_04715 PF00392 Bacterial regulatory proteins, gntR family LTQ02_04715 PF07729 FCD domain LTQ02_04725 PF00296 Luciferase-like monooxygenase LTQ02_04730 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_04740 PF00561 alpha/beta hydrolase fold LTQ02_04745 PF00171 Aldehyde dehydrogenase family LTQ02_04750 PF01613 Flavin reductase like domain LTQ02_04755 PF00171 Aldehyde dehydrogenase family LTQ02_04760 PF02627 Carboxymuconolactone decarboxylase family LTQ02_04765 PF13344 Haloacid dehalogenase-like hydrolase LTQ02_04765 PF00293 NUDIX domain LTQ02_04800 PF02384 N-6 DNA Methylase LTQ02_04805 PF01420 Type I restriction modification DNA specificity domain LTQ02_04810 PF18766 SWI2/SNF2 ATPase LTQ02_04810 PF11867 Domain of unknown function (DUF3387) LTQ02_04810 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LTQ02_04830 PF00293 NUDIX domain LTQ02_04840 PF12102 Domain of unknown function (DUF3578) LTQ02_04840 PF07728 AAA domain (dynein-related subfamily) LTQ02_04845 PF12102 Domain of unknown function (DUF3578) LTQ02_04845 PF07728 AAA domain (dynein-related subfamily) LTQ02_04870 PF00176 SNF2 family N-terminal domain LTQ02_04870 PF12419 SNF2 Helicase protein LTQ02_04870 PF00271 Helicase conserved C-terminal domain LTQ02_04875 PF13006 Insertion element 4 transposase N-terminal LTQ02_04875 PF01609 Transposase DDE domain LTQ02_04885 PF01638 HxlR-like helix-turn-helix LTQ02_04890 PF03466 LysR substrate binding domain LTQ02_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04910 PF00263 Bacterial type II and III secretion system protein LTQ02_04910 PF04972 BON domain LTQ02_04910 PF13629 Pilus formation protein N terminal region LTQ02_04920 PF10609 NUBPL iron-transfer P-loop NTPase LTQ02_04925 PF00437 Type II/IV secretion system protein LTQ02_04960 PF00691 OmpA family LTQ02_04960 PF04972 BON domain LTQ02_04965 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_04965 PF00563 EAL domain LTQ02_04965 PF08448 PAS fold LTQ02_04970 PF00709 Adenylosuccinate synthetase LTQ02_04975 PF03466 LysR substrate binding domain LTQ02_04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_04980 PF12833 Helix-turn-helix domain LTQ02_04990 PF00144 Beta-lactamase LTQ02_05000 PF00144 Beta-lactamase LTQ02_05015 PF12729 Four helix bundle sensory module for signal transduction LTQ02_05015 PF00672 HAMP domain LTQ02_05015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_05025 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_05030 PF01238 Phosphomannose isomerase type I LTQ02_05035 PF01232 Mannitol dehydrogenase Rossmann domain LTQ02_05035 PF08125 Mannitol dehydrogenase C-terminal domain LTQ02_05040 PF00474 Sodium:solute symporter family LTQ02_05045 PF03786 D-mannonate dehydratase (UxuA) LTQ02_05050 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_05050 PF12464 Maltose acetyltransferase LTQ02_05060 PF07729 FCD domain LTQ02_05060 PF00392 Bacterial regulatory proteins, gntR family LTQ02_05070 PF00704 Glycosyl hydrolases family 18 LTQ02_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_05075 PF03466 LysR substrate binding domain LTQ02_05080 PF07715 TonB-dependent Receptor Plug Domain LTQ02_05080 PF00593 TonB dependent receptor LTQ02_05085 PF13649 Methyltransferase domain LTQ02_05090 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_05095 PF00583 Acetyltransferase (GNAT) family LTQ02_05100 PF00082 Subtilase family LTQ02_05105 PF01810 LysE type translocator LTQ02_05120 PF00149 Calcineurin-like phosphoesterase LTQ02_05120 PF12320 Type 5 capsule protein repressor C-terminal domain LTQ02_05125 PF13476 AAA domain LTQ02_05145 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LTQ02_05150 PF00875 DNA photolyase LTQ02_05150 PF03441 FAD binding domain of DNA photolyase LTQ02_05155 PF00582 Universal stress protein family LTQ02_05175 PF07690 Major Facilitator Superfamily LTQ02_05180 PF03009 Glycerophosphoryl diester phosphodiesterase family LTQ02_05190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ02_05190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ02_05210 PF00293 NUDIX domain LTQ02_05225 PF01479 S4 domain LTQ02_05225 PF00849 RNA pseudouridylate synthase LTQ02_05235 PF12464 Maltose acetyltransferase LTQ02_05235 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_05275 PF03737 Aldolase/RraA LTQ02_05290 PF08264 Anticodon-binding domain of tRNA LTQ02_05290 PF09334 tRNA synthetases class I (M) LTQ02_05290 PF01588 Putative tRNA binding domain LTQ02_05300 PF00293 NUDIX domain LTQ02_05350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_05360 PF00583 Acetyltransferase (GNAT) family LTQ02_05380 PF02016 LD-carboxypeptidase N-terminal domain LTQ02_05380 PF17676 LD-carboxypeptidase C-terminal domain LTQ02_05400 PF02810 SEC-C motif LTQ02_05400 PF07517 SecA DEAD-like domain LTQ02_05400 PF01043 SecA preprotein cross-linking domain LTQ02_05400 PF07516 SecA Wing and Scaffold domain LTQ02_05405 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_05420 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_05450 PF03616 Sodium/glutamate symporter LTQ02_05465 PF12392 Collagenase LTQ02_05465 PF01136 Peptidase family U32 LTQ02_05470 PF13006 Insertion element 4 transposase N-terminal LTQ02_05470 PF01609 Transposase DDE domain LTQ02_05480 PF00664 ABC transporter transmembrane region LTQ02_05480 PF00005 ABC transporter LTQ02_05485 PF00005 ABC transporter LTQ02_05490 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_05495 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05500 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05510 PF02371 Transposase IS116/IS110/IS902 family LTQ02_05510 PF01548 Transposase LTQ02_05535 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_05555 PF08241 Methyltransferase domain LTQ02_05630 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LTQ02_05640 PF02321 Outer membrane efflux protein LTQ02_05645 PF00873 AcrB/AcrD/AcrF family LTQ02_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_05655 PF03466 LysR substrate binding domain LTQ02_05660 PF02397 Bacterial sugar transferase LTQ02_05670 PF00534 Glycosyl transferases group 1 LTQ02_05670 PF13439 Glycosyltransferase Family 4 LTQ02_05695 PF13439 Glycosyltransferase Family 4 LTQ02_05695 PF00534 Glycosyl transferases group 1 LTQ02_05700 PF02954 Bacterial regulatory protein, Fis family LTQ02_05700 PF00072 Response regulator receiver domain LTQ02_05700 PF00158 Sigma-54 interaction domain LTQ02_05710 PF00005 ABC transporter LTQ02_05710 PF00571 CBS domain LTQ02_05715 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05735 PF00691 OmpA family LTQ02_05745 PF14743 DNA ligase OB-like domain LTQ02_05745 PF01068 ATP dependent DNA ligase domain LTQ02_05750 PF01554 MatE LTQ02_05755 PF00677 Lumazine binding domain LTQ02_05765 PF03881 Fructosamine kinase LTQ02_05775 PF00877 NlpC/P60 family LTQ02_05780 PF02743 Cache domain LTQ02_05780 PF00672 HAMP domain LTQ02_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_05790 PF03942 DTW domain LTQ02_05795 PF00480 ROK family LTQ02_05805 PF03454 MoeA C-terminal region (domain IV) LTQ02_05805 PF03453 MoeA N-terminal region (domain I and II) LTQ02_05805 PF00994 Probable molybdopterin binding domain LTQ02_05810 PF12804 MobA-like NTP transferase domain LTQ02_05815 PF00005 ABC transporter LTQ02_05815 PF08402 TOBE domain LTQ02_05820 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05825 PF12849 PBP superfamily domain LTQ02_05830 PF02954 Bacterial regulatory protein, Fis family LTQ02_05830 PF00072 Response regulator receiver domain LTQ02_05830 PF00158 Sigma-54 interaction domain LTQ02_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_05835 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_05840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_05840 PF08269 Cache domain LTQ02_05855 PF00005 ABC transporter LTQ02_05855 PF12848 ABC transporter LTQ02_05885 PF02613 Nitrate reductase delta subunit LTQ02_05895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ02_05895 PF00384 Molybdopterin oxidoreductase LTQ02_05895 PF01568 Molydopterin dinucleotide binding domain LTQ02_05900 PF13247 4Fe-4S dicluster domain LTQ02_05915 PF00909 Ammonium Transporter Family LTQ02_05920 PF02146 Sir2 family LTQ02_05930 PF13416 Bacterial extracellular solute-binding protein LTQ02_05935 PF13416 Bacterial extracellular solute-binding protein LTQ02_05940 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05945 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_05950 PF00005 ABC transporter LTQ02_05950 PF08402 TOBE domain LTQ02_05970 PF01171 PP-loop family LTQ02_05975 PF00582 Universal stress protein family LTQ02_05980 PF00027 Cyclic nucleotide-binding domain LTQ02_05980 PF13545 Crp-like helix-turn-helix domain LTQ02_05995 PF00403 Heavy-metal-associated domain LTQ02_06005 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LTQ02_06005 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ02_06020 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ02_06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_06035 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_06035 PF09308 LuxQ, periplasmic LTQ02_06035 PF00072 Response regulator receiver domain LTQ02_06140 PF06303 MatP N-terminal domain LTQ02_06140 PF17414 MatP C-terminal ribbon-helix-helix domain LTQ02_06145 PF13654 AAA domain LTQ02_06145 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ02_06150 PF07977 FabA-like domain LTQ02_06155 PF04957 Ribosome modulation factor LTQ02_06165 PF00005 ABC transporter LTQ02_06165 PF16326 ABC transporter C-terminal domain LTQ02_06165 PF12848 ABC transporter LTQ02_06175 PF01170 Putative RNA methylase family UPF0020 LTQ02_06175 PF02926 THUMP domain LTQ02_06175 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ02_06180 PF07126 Cell-division protein ZapC LTQ02_06185 PF01180 Dihydroorotate dehydrogenase LTQ02_06190 PF05088 Bacterial NAD-glutamate dehydrogenase LTQ02_06200 PF11940 Domain of unknown function (DUF3458) Ig-like fold LTQ02_06200 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LTQ02_06200 PF01433 Peptidase family M1 domain LTQ02_06210 PF17804 Tail specific protease N-terminal domain LTQ02_06210 PF11818 C-terminal domain of tail specific protease (DUF3340) LTQ02_06210 PF03572 Peptidase family S41 LTQ02_06210 PF00595 PDZ domain LTQ02_06215 PF04352 ProQ/FINO family LTQ02_06215 PF17516 ProQ C-terminal domain LTQ02_06220 PF13185 GAF domain LTQ02_06225 PF00664 ABC transporter transmembrane region LTQ02_06225 PF00005 ABC transporter LTQ02_06235 PF02470 MlaD protein LTQ02_06240 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LTQ02_06240 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LTQ02_06240 PF01189 16S rRNA methyltransferase RsmB/F LTQ02_06245 PF13509 S1 domain LTQ02_06245 PF17783 CvfB-like winged helix domain LTQ02_06260 PF00391 PEP-utilising enzyme, mobile domain LTQ02_06260 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ02_06260 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LTQ02_06265 PF00793 DAHP synthetase I family LTQ02_06270 PF04461 Protein of unknown function (DUF520) LTQ02_06275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ02_06275 PF14824 Sirohaem biosynthesis protein central LTQ02_06275 PF10414 Sirohaem synthase dimerisation region LTQ02_06280 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_06285 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_06290 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_06295 PF00005 ABC transporter LTQ02_06300 PF01027 Inhibitor of apoptosis-promoting Bax1 LTQ02_06305 PF04358 DsrC like protein LTQ02_06310 PF00708 Acylphosphatase LTQ02_06315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_06315 PF12729 Four helix bundle sensory module for signal transduction LTQ02_06315 PF00672 HAMP domain LTQ02_06320 PF17785 PUA-like domain LTQ02_06320 PF10672 S-adenosylmethionine-dependent methyltransferase LTQ02_06340 PF13488 Glycine zipper LTQ02_06340 PF00691 OmpA family LTQ02_06350 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_06350 PF17151 Periplasmic sensor domain LTQ02_06355 PF06508 Queuosine biosynthesis protein QueC LTQ02_06360 PF04055 Radical SAM superfamily LTQ02_06390 PF16177 Acetyl-coenzyme A synthetase N-terminus LTQ02_06390 PF00501 AMP-binding enzyme LTQ02_06390 PF13193 AMP-binding enzyme C-terminal domain LTQ02_06395 PF04303 PrpF protein LTQ02_06400 PF00330 Aconitase family (aconitate hydratase) LTQ02_06400 PF00694 Aconitase C-terminal domain LTQ02_06405 PF00285 Citrate synthase, C-terminal domain LTQ02_06420 PF07690 Major Facilitator Superfamily LTQ02_06445 PF01970 Tripartite tricarboxylate transporter TctA family LTQ02_06460 PF09905 DNA-binding protein VF530 LTQ02_06465 PF00072 Response regulator receiver domain LTQ02_06470 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LTQ02_06470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ02_06475 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LTQ02_06480 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LTQ02_06480 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LTQ02_06485 PF12431 Transcriptional regulator LTQ02_06485 PF00072 Response regulator receiver domain LTQ02_06490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LTQ02_06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_06490 PF00989 PAS fold LTQ02_06490 PF17203 Single cache domain 3 LTQ02_06505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_06520 PF01235 Sodium:alanine symporter family LTQ02_06540 PF01235 Sodium:alanine symporter family LTQ02_06555 PF01117 Aerolysin toxin LTQ02_06555 PF03440 Aerolysin/Pertussis toxin (APT) domain LTQ02_06560 PF01810 LysE type translocator LTQ02_06565 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LTQ02_06575 PF01925 Sulfite exporter TauE/SafE LTQ02_06585 PF01717 Cobalamin-independent synthase, Catalytic domain LTQ02_06585 PF08267 Cobalamin-independent synthase, N-terminal domain LTQ02_06605 PF01928 CYTH domain LTQ02_06615 PF13673 Acetyltransferase (GNAT) domain LTQ02_06630 PF02954 Bacterial regulatory protein, Fis family LTQ02_06630 PF00158 Sigma-54 interaction domain LTQ02_06630 PF00072 Response regulator receiver domain LTQ02_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_06635 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_06635 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_06640 PF00939 Sodium:sulfate symporter transmembrane region LTQ02_06665 PF03413 Peptidase propeptide and YPEB domain LTQ02_06665 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_06665 PF01447 Thermolysin metallopeptidase, catalytic domain LTQ02_06665 PF07504 Fungalysin/Thermolysin Propeptide Motif LTQ02_06665 PF02868 Thermolysin metallopeptidase, alpha-helical domain LTQ02_06690 PF01212 Beta-eliminating lyase LTQ02_06705 PF01625 Peptide methionine sulfoxide reductase LTQ02_06705 PF01641 SelR domain LTQ02_06715 PF00474 Sodium:solute symporter family LTQ02_06725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_06725 PF12729 Four helix bundle sensory module for signal transduction LTQ02_06725 PF00672 HAMP domain LTQ02_06735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ02_06735 PF14579 Helix-hairpin-helix motif LTQ02_06735 PF02811 PHP domain LTQ02_06735 PF00929 Exonuclease LTQ02_06735 PF11490 DNA polymerase III polC-type N-terminus II LTQ02_06735 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ02_06740 PF00571 CBS domain LTQ02_06745 PF07729 FCD domain LTQ02_06745 PF00392 Bacterial regulatory proteins, gntR family LTQ02_06755 PF07729 FCD domain LTQ02_06755 PF00392 Bacterial regulatory proteins, gntR family LTQ02_06765 PF08787 Alginate lyase LTQ02_06780 PF08787 Alginate lyase LTQ02_06785 PF08787 Alginate lyase LTQ02_06790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_06790 PF00672 HAMP domain LTQ02_06795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ02_06795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ02_06805 PF00474 Sodium:solute symporter family LTQ02_06810 PF07729 FCD domain LTQ02_06810 PF00392 Bacterial regulatory proteins, gntR family LTQ02_06815 PF01557 Fumarylacetoacetate (FAA) hydrolase family LTQ02_06825 PF05426 Alginate lyase LTQ02_06825 PF07940 Heparinase II/III-like protein LTQ02_06830 PF07883 Cupin domain LTQ02_06835 PF00294 pfkB family carbohydrate kinase LTQ02_06840 PF01081 KDPG and KHG aldolase LTQ02_06845 PF00474 Sodium:solute symporter family LTQ02_06850 PF01464 Transglycosylase SLT domain LTQ02_06850 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_06860 PF00491 Arginase family LTQ02_06865 PF17810 Arginine decarboxylase helical bundle domain LTQ02_06865 PF17944 Arginine decarboxylase C-terminal helical extension LTQ02_06865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LTQ02_06875 PF17932 Tetracyclin repressor-like, C-terminal domain LTQ02_06875 PF00440 Bacterial regulatory proteins, tetR family LTQ02_06880 PF00005 ABC transporter LTQ02_06880 PF12848 ABC transporter LTQ02_06880 PF16326 ABC transporter C-terminal domain LTQ02_06895 PF04266 ASCH domain LTQ02_06900 PF00453 Ribosomal protein L20 LTQ02_06905 PF01632 Ribosomal protein L35 LTQ02_06910 PF00707 Translation initiation factor IF-3, C-terminal domain LTQ02_06910 PF05198 Translation initiation factor IF-3, N-terminal domain LTQ02_06915 PF03129 Anticodon binding domain LTQ02_06915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ02_06915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LTQ02_06915 PF02824 TGS domain LTQ02_06920 PF04245 37-kD nucleoid-associated bacterial protein LTQ02_07045 PF00574 Clp protease LTQ02_07080 PF00959 Phage lysozyme LTQ02_07100 PF01966 HD domain LTQ02_07155 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LTQ02_07160 PF01381 Helix-turn-helix LTQ02_07160 PF00717 Peptidase S24-like LTQ02_07205 PF06114 IrrE N-terminal-like domain LTQ02_07215 PF13356 Arm DNA-binding domain LTQ02_07215 PF00589 Phage integrase family LTQ02_07225 PF07070 SpoOM protein LTQ02_07230 PF07702 UTRA domain LTQ02_07230 PF00392 Bacterial regulatory proteins, gntR family LTQ02_07240 PF00491 Arginase family LTQ02_07265 PF02913 FAD linked oxidases, C-terminal domain LTQ02_07265 PF01565 FAD binding domain LTQ02_07265 PF13183 4Fe-4S dicluster domain LTQ02_07280 PF00691 OmpA family LTQ02_07300 PF01259 SAICAR synthetase LTQ02_07315 PF00390 Malic enzyme, N-terminal domain LTQ02_07315 PF03949 Malic enzyme, NAD binding domain LTQ02_07320 PF02698 DUF218 domain LTQ02_07325 PF00939 Sodium:sulfate symporter transmembrane region LTQ02_07330 PF06942 GlpM protein LTQ02_07335 PF00072 Response regulator receiver domain LTQ02_07335 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_07345 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_07350 PF03466 LysR substrate binding domain LTQ02_07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_07385 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_07390 PF00005 ABC transporter LTQ02_07390 PF00664 ABC transporter transmembrane region LTQ02_07395 PF00005 ABC transporter LTQ02_07395 PF00664 ABC transporter transmembrane region LTQ02_07400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_07400 PF00672 HAMP domain LTQ02_07400 PF02743 Cache domain LTQ02_07410 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_07415 PF00072 Response regulator receiver domain LTQ02_07415 PF00196 Bacterial regulatory proteins, luxR family LTQ02_07420 PF07730 Histidine kinase LTQ02_07420 PF17200 Single Cache domain 2 LTQ02_07425 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_07435 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_07455 PF05951 Bacterial protein of unknown function (DUF882) LTQ02_07460 PF01471 Putative peptidoglycan binding domain LTQ02_07460 PF03734 L,D-transpeptidase catalytic domain LTQ02_07485 PF00925 GTP cyclohydrolase II LTQ02_07495 PF03918 Cytochrome C biogenesis protein LTQ02_07500 PF08534 Redoxin LTQ02_07510 PF03916 Polysulphide reductase, NrfD LTQ02_07515 PF13247 4Fe-4S dicluster domain LTQ02_07525 PF02335 Cytochrome c552 LTQ02_07530 PF00581 Rhodanese-like domain LTQ02_07540 PF03989 DNA gyrase C-terminal domain, beta-propeller LTQ02_07540 PF00521 DNA gyrase/topoisomerase IV, subunit A LTQ02_07550 PF03477 ATP cone domain LTQ02_07550 PF02867 Ribonucleotide reductase, barrel domain LTQ02_07550 PF00317 Ribonucleotide reductase, all-alpha domain LTQ02_07555 PF00268 Ribonucleotide reductase, small chain LTQ02_07560 PF00970 Oxidoreductase FAD-binding domain LTQ02_07560 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_07560 PF00175 Oxidoreductase NAD-binding domain LTQ02_07570 PF02613 Nitrate reductase delta subunit LTQ02_07575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ02_07575 PF00384 Molybdopterin oxidoreductase LTQ02_07575 PF01568 Molydopterin dinucleotide binding domain LTQ02_07580 PF12800 4Fe-4S binding domain LTQ02_07580 PF13247 4Fe-4S dicluster domain LTQ02_07585 PF04976 DMSO reductase anchor subunit (DmsC) LTQ02_07590 PF00994 Probable molybdopterin binding domain LTQ02_07615 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LTQ02_07620 PF03435 Saccharopine dehydrogenase NADP binding domain LTQ02_07620 PF16653 Saccharopine dehydrogenase C-terminal domain LTQ02_07625 PF00202 Aminotransferase class-III LTQ02_07650 PF01066 CDP-alcohol phosphatidyltransferase LTQ02_07655 PF08459 UvrC Helix-hairpin-helix N-terminal LTQ02_07655 PF01541 GIY-YIG catalytic domain LTQ02_07655 PF02151 UvrB/uvrC motif LTQ02_07660 PF00196 Bacterial regulatory proteins, luxR family LTQ02_07660 PF00072 Response regulator receiver domain LTQ02_07665 PF00136 DNA polymerase family B LTQ02_07665 PF03104 DNA polymerase family B, exonuclease domain LTQ02_07675 PF01132 Elongation factor P (EF-P) OB domain LTQ02_07675 PF08207 Elongation factor P (EF-P) KOW-like domain LTQ02_07675 PF09285 Elongation factor P, C-terminal LTQ02_07680 PF04269 Protein of unknown function, DUF440 LTQ02_07690 PF00849 RNA pseudouridylate synthase LTQ02_07690 PF01479 S4 domain LTQ02_07695 PF01300 Telomere recombination LTQ02_07700 PF02811 PHP domain LTQ02_07705 PF08056 Tryptophan operon leader peptide LTQ02_07710 PF00425 chorismate binding enzyme LTQ02_07710 PF04715 Anthranilate synthase component I, N terminal region LTQ02_07715 PF00117 Glutamine amidotransferase class-I LTQ02_07720 PF00591 Glycosyl transferase family, a/b domain LTQ02_07720 PF02885 Glycosyl transferase family, helical bundle domain LTQ02_07725 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LTQ02_07725 PF00218 Indole-3-glycerol phosphate synthase LTQ02_07730 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_07735 PF00290 Tryptophan synthase alpha chain LTQ02_07740 PF16200 C-terminal region of band_7 LTQ02_07740 PF01145 SPFH domain / Band 7 family LTQ02_07750 PF00375 Sodium:dicarboxylate symporter family LTQ02_07755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_07760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ02_07765 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_07770 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_07775 PF00155 Aminotransferase class I and II LTQ02_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_07780 PF03466 LysR substrate binding domain LTQ02_07790 PF04279 Intracellular septation protein A LTQ02_07795 PF03061 Thioesterase superfamily LTQ02_07800 PF03795 YCII-related domain LTQ02_07810 PF01717 Cobalamin-independent synthase, Catalytic domain LTQ02_07810 PF08267 Cobalamin-independent synthase, N-terminal domain LTQ02_07815 PF03466 LysR substrate binding domain LTQ02_07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_07835 PF11842 Domain of unknown function (DUF3362) LTQ02_07835 PF08497 Radical SAM N-terminal LTQ02_07835 PF04055 Radical SAM superfamily LTQ02_07845 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LTQ02_07850 PF00535 Glycosyl transferase family 2 LTQ02_07855 PF00486 Transcriptional regulatory protein, C terminal LTQ02_07855 PF00072 Response regulator receiver domain LTQ02_07875 PF01266 FAD dependent oxidoreductase LTQ02_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_07880 PF03466 LysR substrate binding domain LTQ02_07900 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LTQ02_07900 PF01464 Transglycosylase SLT domain LTQ02_07920 PF03616 Sodium/glutamate symporter LTQ02_07930 PF06610 L-alanine exporter LTQ02_07935 PF00072 Response regulator receiver domain LTQ02_07935 PF09308 LuxQ, periplasmic LTQ02_07935 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_07950 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LTQ02_07950 PF01648 4'-phosphopantetheinyl transferase superfamily LTQ02_07955 PF00005 ABC transporter LTQ02_07960 PF00550 Phosphopantetheine attachment site LTQ02_07960 PF13193 AMP-binding enzyme C-terminal domain LTQ02_07960 PF00501 AMP-binding enzyme LTQ02_07960 PF07993 Male sterility protein LTQ02_07960 PF00668 Condensation domain LTQ02_07965 PF01032 FecCD transport family LTQ02_07970 PF01032 FecCD transport family LTQ02_07975 PF01497 Periplasmic binding protein LTQ02_07980 PF00550 Phosphopantetheine attachment site LTQ02_07980 PF00668 Condensation domain LTQ02_07980 PF13193 AMP-binding enzyme C-terminal domain LTQ02_07980 PF00501 AMP-binding enzyme LTQ02_07980 PF00975 Thioesterase domain LTQ02_07985 PF00793 DAHP synthetase I family LTQ02_07995 PF00425 chorismate binding enzyme LTQ02_08000 PF00501 AMP-binding enzyme LTQ02_08000 PF13193 AMP-binding enzyme C-terminal domain LTQ02_08005 PF08021 Siderophore-interacting FAD-binding domain LTQ02_08005 PF04954 Siderophore-interacting protein LTQ02_08010 PF00857 Isochorismatase family LTQ02_08010 PF00550 Phosphopantetheine attachment site LTQ02_08015 PF01817 Chorismate mutase type II LTQ02_08020 PF13193 AMP-binding enzyme C-terminal domain LTQ02_08020 PF00501 AMP-binding enzyme LTQ02_08030 PF07715 TonB-dependent Receptor Plug Domain LTQ02_08045 PF07690 Major Facilitator Superfamily LTQ02_08050 PF02445 Quinolinate synthetase A protein LTQ02_08055 PF16331 TolA binding protein trimerisation LTQ02_08055 PF13174 Tetratricopeptide repeat LTQ02_08060 PF00691 OmpA family LTQ02_08065 PF04052 TolB amino-terminal domain LTQ02_08065 PF07676 WD40-like Beta Propeller Repeat LTQ02_08075 PF02472 Biopolymer transport protein ExbD/TolR LTQ02_08080 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_08085 PF03061 Thioesterase superfamily LTQ02_08095 PF08173 Membrane bound YbgT-like protein LTQ02_08100 PF02322 Cytochrome bd terminal oxidase subunit II LTQ02_08105 PF01654 Cytochrome bd terminal oxidase subunit I LTQ02_08110 PF05496 Holliday junction DNA helicase RuvB P-loop domain LTQ02_08110 PF05491 RuvB C-terminal winged helix domain LTQ02_08110 PF17864 RuvB AAA lid domain LTQ02_08115 PF01330 RuvA N terminal domain LTQ02_08115 PF07499 RuvA, C-terminal domain LTQ02_08120 PF00672 HAMP domain LTQ02_08120 PF02203 Tar ligand binding domain homologue LTQ02_08120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_08125 PF02075 Crossover junction endodeoxyribonuclease RuvC LTQ02_08130 PF02938 GAD domain LTQ02_08130 PF01336 OB-fold nucleic acid binding domain LTQ02_08130 PF00152 tRNA synthetases class II (D, K and N) LTQ02_08135 PF01904 Protein of unknown function DUF72 LTQ02_08140 PF13649 Methyltransferase domain LTQ02_08145 PF08003 Protein of unknown function (DUF1698) LTQ02_08150 PF08443 RimK-like ATP-grasp domain LTQ02_08150 PF18030 RimK PreATP-grasp domain LTQ02_08165 PF12838 4Fe-4S dicluster domain LTQ02_08165 PF00384 Molybdopterin oxidoreductase LTQ02_08165 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LTQ02_08165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ02_08165 PF01568 Molydopterin dinucleotide binding domain LTQ02_08170 PF16330 MukB hinge domain LTQ02_08170 PF04310 MukB N-terminal LTQ02_08175 PF04288 MukE-like family LTQ02_08180 PF03882 MukF winged-helix domain LTQ02_08180 PF17192 MukF middle domain LTQ02_08180 PF17193 MukF C-terminal domain LTQ02_08185 PF13847 Methyltransferase domain LTQ02_08190 PF02698 DUF218 domain LTQ02_08195 PF00072 Response regulator receiver domain LTQ02_08195 PF00486 Transcriptional regulatory protein, C terminal LTQ02_08200 PF02613 Nitrate reductase delta subunit LTQ02_08205 PF00356 Bacterial regulatory proteins, lacI family LTQ02_08210 PF04993 TfoX N-terminal domain LTQ02_08210 PF04994 TfoX C-terminal domain LTQ02_08230 PF00534 Glycosyl transferases group 1 LTQ02_08230 PF08323 Starch synthase catalytic domain LTQ02_08235 PF00483 Nucleotidyl transferase LTQ02_08240 PF01396 Topoisomerase DNA binding C4 zinc finger LTQ02_08240 PF01751 Toprim domain LTQ02_08240 PF01131 DNA topoisomerase LTQ02_08240 PF08272 Topoisomerase I zinc-ribbon-like LTQ02_08245 PF10692 Protein of unknown function (DUF2498) LTQ02_08250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LTQ02_08260 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LTQ02_08265 PF04377 Arginine-tRNA-protein transferase, C terminus LTQ02_08265 PF04376 Arginine-tRNA-protein transferase, N terminus LTQ02_08270 PF01176 Translation initiation factor 1A / IF-1 LTQ02_08275 PF07724 AAA domain (Cdc48 subfamily) LTQ02_08275 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ02_08275 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_08275 PF17871 AAA lid domain LTQ02_08275 PF02861 Clp amino terminal domain, pathogenicity island component LTQ02_08280 PF02617 ATP-dependent Clp protease adaptor protein ClpS LTQ02_08285 PF00313 'Cold-shock' DNA-binding domain LTQ02_08295 PF03971 Monomeric isocitrate dehydrogenase LTQ02_08300 PF00849 RNA pseudouridylate synthase LTQ02_08310 PF06733 DEAD_2 LTQ02_08310 PF13307 Helicase C-terminal domain LTQ02_08315 PF01925 Sulfite exporter TauE/SafE LTQ02_08325 PF10689 Protein of unknown function (DUF2496) LTQ02_08330 PF08007 Cupin superfamily protein LTQ02_08335 PF02743 Cache domain LTQ02_08335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_08335 PF00672 HAMP domain LTQ02_08340 PF07690 Major Facilitator Superfamily LTQ02_08345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LTQ02_08345 PF00326 Prolyl oligopeptidase family LTQ02_08350 PF03372 Endonuclease/Exonuclease/phosphatase family LTQ02_08355 PF13402 Peptidase M60, enhancin and enhancin-like LTQ02_08355 PF18650 Immunomodulating metalloprotease N-terminal domain LTQ02_08355 PF18642 Immunomodulating metalloprotease helical domain LTQ02_08360 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_08365 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_08370 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_08375 PF00005 ABC transporter LTQ02_08390 PF02901 Pyruvate formate lyase-like LTQ02_08390 PF01228 Glycine radical LTQ02_08400 PF04055 Radical SAM superfamily LTQ02_08405 PF03887 YfbU domain LTQ02_08420 PF06629 MltA-interacting protein MipA LTQ02_08425 PF06798 PrkA serine protein kinase C-terminal domain LTQ02_08425 PF08298 PrkA AAA domain LTQ02_08430 PF04285 Protein of unknown function (DUF444) LTQ02_08435 PF04293 SpoVR like protein LTQ02_08440 PF08496 Peptidase family S49 N-terminal LTQ02_08440 PF01343 Peptidase family S49 LTQ02_08445 PF00106 short chain dehydrogenase LTQ02_08450 PF00154 recA bacterial DNA recombination protein LTQ02_08465 PF00072 Response regulator receiver domain LTQ02_08465 PF01584 CheW-like domain LTQ02_08470 PF00480 ROK family LTQ02_08475 PF02887 Pyruvate kinase, alpha/beta domain LTQ02_08475 PF00224 Pyruvate kinase, barrel domain LTQ02_08480 PF01734 Patatin-like phospholipase LTQ02_08500 PF00367 phosphotransferase system, EIIB LTQ02_08500 PF02378 Phosphotransferase system, EIIC LTQ02_08505 PF01026 TatD related DNase LTQ02_08510 PF09115 DNA polymerase III, delta subunit, C terminal LTQ02_08515 PF02223 Thymidylate kinase LTQ02_08520 PF02618 YceG-like family LTQ02_08525 PF01063 Amino-transferase class IV LTQ02_08530 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_08530 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_08535 PF00550 Phosphopantetheine attachment site LTQ02_08545 PF00698 Acyl transferase domain LTQ02_08550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LTQ02_08550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LTQ02_08555 PF02504 Fatty acid synthesis protein LTQ02_08560 PF01783 Ribosomal L32p protein family LTQ02_08565 PF02620 Large ribosomal RNA subunit accumulation protein YceD LTQ02_08570 PF02545 Maf-like protein LTQ02_08575 PF00849 RNA pseudouridylate synthase LTQ02_08575 PF01479 S4 domain LTQ02_08580 PF00575 S1 RNA binding domain LTQ02_08580 PF12111 Polyribonucleotide phosphorylase C terminal LTQ02_08580 PF10150 Ribonuclease E/G family LTQ02_08585 PF00916 Sulfate permease family LTQ02_08585 PF01740 STAS domain LTQ02_08590 PF01451 Low molecular weight phosphotyrosine protein phosphatase LTQ02_08595 PF12557 Cob(I)alamin adenosyltransferase N terminal LTQ02_08595 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LTQ02_08600 PF05170 AsmA family LTQ02_08605 PF00485 Phosphoribulokinase / Uridine kinase family LTQ02_08610 PF10609 NUBPL iron-transfer P-loop NTPase LTQ02_08625 PF07840 FadR C-terminal domain LTQ02_08625 PF00392 Bacterial regulatory proteins, gntR family LTQ02_08630 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LTQ02_08635 PF02600 Disulfide bond formation protein DsbB LTQ02_08640 PF07516 SecA Wing and Scaffold domain LTQ02_08640 PF01043 SecA preprotein cross-linking domain LTQ02_08640 PF07517 SecA DEAD-like domain LTQ02_08640 PF02810 SEC-C motif LTQ02_08645 PF07963 Prokaryotic N-terminal methylation motif LTQ02_08645 PF08334 Type II secretion system (T2SS), protein G LTQ02_08655 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_08655 PF05230 MASE2 domain LTQ02_08660 PF00128 Alpha amylase, catalytic domain LTQ02_08660 PF02903 Alpha amylase, N-terminal ig-like domain LTQ02_08670 PF04217 Protein of unknown function, DUF412 LTQ02_08675 PF00871 Acetokinase family LTQ02_08680 PF07085 DRTGG domain LTQ02_08680 PF01515 Phosphate acetyl/butaryl transferase LTQ02_08685 PF13409 Glutathione S-transferase, N-terminal domain LTQ02_08690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_08690 PF00005 ABC transporter LTQ02_08695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_08695 PF00005 ABC transporter LTQ02_08700 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_08700 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ02_08705 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_08710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_08715 PF02391 MoaE protein LTQ02_08720 PF02597 ThiS family LTQ02_08725 PF01967 MoaC family LTQ02_08730 PF00994 Probable molybdopterin binding domain LTQ02_08735 PF06463 Molybdenum Cofactor Synthesis C LTQ02_08735 PF04055 Radical SAM superfamily LTQ02_08740 PF01933 Uncharacterised protein family UPF0052 LTQ02_08745 PF01627 Hpt domain LTQ02_08750 PF00158 Sigma-54 interaction domain LTQ02_08750 PF02954 Bacterial regulatory protein, Fis family LTQ02_08750 PF00072 Response regulator receiver domain LTQ02_08755 PF17757 UvrB interaction domain LTQ02_08755 PF12344 Ultra-violet resistance protein B LTQ02_08755 PF02151 UvrB/uvrC motif LTQ02_08755 PF00271 Helicase conserved C-terminal domain LTQ02_08755 PF04851 Type III restriction enzyme, res subunit LTQ02_08765 PF02508 Rnf-Nqr subunit, membrane protein LTQ02_08770 PF04060 Putative Fe-S cluster LTQ02_08775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LTQ02_08775 PF12838 4Fe-4S dicluster domain LTQ02_08775 PF13375 RnfC Barrel sandwich hybrid domain LTQ02_08775 PF10531 SLBB domain LTQ02_08780 PF03116 NQR2, RnfD, RnfE family LTQ02_08785 PF04205 FMN-binding domain LTQ02_08790 PF02508 Rnf-Nqr subunit, membrane protein LTQ02_08795 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ02_08795 PF10576 Iron-sulfur binding domain of endonuclease III LTQ02_08795 PF00633 Helix-hairpin-helix motif LTQ02_08800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_08805 PF10952 Protein of unknown function (DUF2753) LTQ02_08810 PF18393 MotY N-terminal domain LTQ02_08810 PF00691 OmpA family LTQ02_08815 PF00929 Exonuclease LTQ02_08820 PF13726 Na+-H+ antiporter family LTQ02_08820 PF03553 Na+/H+ antiporter family LTQ02_08830 PF00462 Glutaredoxin LTQ02_08835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LTQ02_08835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LTQ02_08850 PF00465 Iron-containing alcohol dehydrogenase LTQ02_08850 PF00171 Aldehyde dehydrogenase family LTQ02_08855 PF01914 MarC family integral membrane protein LTQ02_08860 PF00520 Ion transport protein LTQ02_08860 PF00027 Cyclic nucleotide-binding domain LTQ02_08865 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ02_08865 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ02_08870 PF03553 Na+/H+ antiporter family LTQ02_08885 PF04245 37-kD nucleoid-associated bacterial protein LTQ02_08890 PF07208 Protein of unknown function (DUF1414) LTQ02_08895 PF11893 Domain of unknown function (DUF3413) LTQ02_08895 PF00884 Sulfatase LTQ02_08905 PF00226 DnaJ domain LTQ02_08905 PF01556 DnaJ C terminal domain LTQ02_08905 PF00684 DnaJ central domain LTQ02_08910 PF00012 Hsp70 protein LTQ02_08925 PF02082 Transcriptional regulator LTQ02_08935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_08935 PF00672 HAMP domain LTQ02_08935 PF02743 Cache domain LTQ02_08940 PF00850 Histone deacetylase domain LTQ02_08945 PF00106 short chain dehydrogenase LTQ02_08955 PF01131 DNA topoisomerase LTQ02_08955 PF01751 Toprim domain LTQ02_08960 PF00881 Nitroreductase family LTQ02_08965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ02_08965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_08975 PF00710 Asparaginase, N-terminal LTQ02_08975 PF17763 Glutaminase/Asparaginase C-terminal domain LTQ02_08980 PF07023 Protein of unknown function (DUF1315) LTQ02_08990 PF01641 SelR domain LTQ02_08995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ02_08995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ02_09000 PF01263 Aldose 1-epimerase LTQ02_09005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_09005 PF08447 PAS fold LTQ02_09005 PF13426 PAS domain LTQ02_09010 PF13847 Methyltransferase domain LTQ02_09025 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_09030 PF00245 Alkaline phosphatase LTQ02_09035 PF03692 Putative zinc- or iron-chelating domain LTQ02_09040 PF03692 Putative zinc- or iron-chelating domain LTQ02_09045 PF00230 Major intrinsic protein LTQ02_09050 PF02132 RecR protein LTQ02_09050 PF13662 Toprim domain LTQ02_09055 PF02575 YbaB/EbfC DNA-binding family LTQ02_09060 PF12169 DNA polymerase III subunits gamma and tau domain III LTQ02_09060 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LTQ02_09060 PF12170 DNA polymerase III tau subunit V interacting with alpha LTQ02_09065 PF00156 Phosphoribosyl transferase domain LTQ02_09070 PF04304 Protein of unknown function (DUF454) LTQ02_09080 PF00072 Response regulator receiver domain LTQ02_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_09085 PF03466 LysR substrate binding domain LTQ02_09090 PF00156 Phosphoribosyl transferase domain LTQ02_09095 PF02674 Colicin V production protein LTQ02_09100 PF05036 Sporulation related domain LTQ02_09105 PF02875 Mur ligase family, glutamate ligase domain LTQ02_09105 PF08245 Mur ligase middle domain LTQ02_09110 PF01039 Carboxyl transferase domain LTQ02_09110 PF17848 Acetyl-coA carboxylase zinc finger domain LTQ02_09115 PF01416 tRNA pseudouridine synthase LTQ02_09125 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ02_09125 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ02_09130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ02_09130 PF11890 Domain of unknown function (DUF3410) LTQ02_09130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ02_09140 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_09140 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_09155 PF08891 YfcL protein LTQ02_09160 PF04315 Elongation factor P hydroxylase LTQ02_09165 PF03458 UPF0126 domain LTQ02_09170 PF01264 Chorismate synthase LTQ02_09185 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LTQ02_09185 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LTQ02_09195 PF07670 Nucleoside recognition LTQ02_09195 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ02_09195 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ02_09200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_09200 PF03466 LysR substrate binding domain LTQ02_09205 PF13406 Transglycosylase SLT domain LTQ02_09210 PF05166 YcgL domain LTQ02_09215 PF03775 Septum formation inhibitor MinC, C-terminal domain LTQ02_09215 PF05209 Septum formation inhibitor MinC, N-terminal domain LTQ02_09220 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LTQ02_09225 PF03776 Septum formation topological specificity factor MinE LTQ02_09230 PF01612 3'-5' exonuclease LTQ02_09230 PF00570 HRDC domain LTQ02_09235 PF00501 AMP-binding enzyme LTQ02_09235 PF13193 AMP-binding enzyme C-terminal domain LTQ02_09240 PF00561 alpha/beta hydrolase fold LTQ02_09255 PF00814 Glycoprotease family LTQ02_09260 PF04851 Type III restriction enzyme, res subunit LTQ02_09260 PF13307 Helicase C-terminal domain LTQ02_09270 PF00551 Formyl transferase LTQ02_09270 PF01842 ACT domain LTQ02_09275 PF06185 YecM protein LTQ02_09280 PF03485 Arginyl tRNA synthetase N terminal domain LTQ02_09280 PF05746 DALR anticodon binding domain LTQ02_09280 PF00750 tRNA synthetases class I (R) LTQ02_09295 PF07664 Ferrous iron transport protein B C terminus LTQ02_09295 PF02421 Ferrous iron transport protein B LTQ02_09295 PF07670 Nucleoside recognition LTQ02_09300 PF04023 FeoA domain LTQ02_09310 PF12833 Helix-turn-helix domain LTQ02_09315 PF01297 Zinc-uptake complex component A periplasmic LTQ02_09320 PF00005 ABC transporter LTQ02_09325 PF00950 ABC 3 transport family LTQ02_09330 PF00549 CoA-ligase LTQ02_09330 PF02629 CoA binding domain LTQ02_09335 PF08442 ATP-grasp domain LTQ02_09335 PF00549 CoA-ligase LTQ02_09340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LTQ02_09340 PF00364 Biotin-requiring enzyme LTQ02_09340 PF02817 e3 binding domain LTQ02_09345 PF16078 2-oxoglutarate dehydrogenase N-terminus LTQ02_09345 PF00676 Dehydrogenase E1 component LTQ02_09345 PF16870 2-oxoglutarate dehydrogenase C-terminal LTQ02_09345 PF02779 Transketolase, pyrimidine binding domain LTQ02_09350 PF13085 2Fe-2S iron-sulfur cluster binding domain LTQ02_09355 PF00890 FAD binding domain LTQ02_09355 PF02910 Fumarate reductase flavoprotein C-term LTQ02_09360 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LTQ02_09365 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LTQ02_09370 PF00285 Citrate synthase, C-terminal domain LTQ02_09375 PF01784 NIF3 (NGG1p interacting factor 3) LTQ02_09385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ02_09385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ02_09385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ02_09385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ02_09390 PF03925 SeqA protein C-terminal domain LTQ02_09390 PF17206 SeqA protein N-terminal domain LTQ02_09395 PF12697 Alpha/beta hydrolase family LTQ02_09405 PF00258 Flavodoxin LTQ02_09415 PF01475 Ferric uptake regulator family LTQ02_09420 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ02_09420 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LTQ02_09425 PF00367 phosphotransferase system, EIIB LTQ02_09425 PF02378 Phosphotransferase system, EIIC LTQ02_09430 PF01979 Amidohydrolase family LTQ02_09435 PF01047 MarR family LTQ02_09435 PF00480 ROK family LTQ02_09440 PF00999 Sodium/hydrogen exchanger family LTQ02_09440 PF02254 TrkA-N domain LTQ02_09445 PF13537 Glutamine amidotransferase domain LTQ02_09445 PF00733 Asparagine synthase LTQ02_09450 PF02357 Transcription termination factor nusG LTQ02_09455 PF00854 POT family LTQ02_09460 PF00762 Ferrochelatase LTQ02_09465 PF05191 Adenylate kinase, active site lid LTQ02_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_09470 PF00183 Hsp90 protein LTQ02_09475 PF00486 Transcriptional regulatory protein, C terminal LTQ02_09480 PF17323 Trans-membrane regulatory protein ToxS LTQ02_09490 PF12850 Calcineurin-like phosphoesterase superfamily domain LTQ02_09505 PF07556 Protein of unknown function (DUF1538) LTQ02_09510 PF07556 Protein of unknown function (DUF1538) LTQ02_09515 PF01370 NAD dependent epimerase/dehydratase family LTQ02_09515 PF08338 Domain of unknown function (DUF1731) LTQ02_09520 PF00106 short chain dehydrogenase LTQ02_09525 PF00085 Thioredoxin LTQ02_09530 PF16200 C-terminal region of band_7 LTQ02_09530 PF01145 SPFH domain / Band 7 family LTQ02_09540 PF13411 MerR HTH family regulatory protein LTQ02_09555 PF03573 outer membrane porin, OprD family LTQ02_09565 PF01653 NAD-dependent DNA ligase adenylation domain LTQ02_09565 PF03120 NAD-dependent DNA ligase OB-fold domain LTQ02_09565 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LTQ02_09565 PF12826 Helix-hairpin-helix motif LTQ02_09565 PF00533 BRCA1 C Terminus (BRCT) domain LTQ02_09570 PF04354 ZipA, C-terminal FtsZ-binding domain LTQ02_09580 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_09585 PF00381 PTS HPr component phosphorylation site LTQ02_09590 PF05524 PEP-utilising enzyme, N-terminal LTQ02_09590 PF00391 PEP-utilising enzyme, mobile domain LTQ02_09590 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ02_09595 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LTQ02_09600 PF07196 Flagellin hook IN motif LTQ02_09600 PF00669 Bacterial flagellin N-terminal helical region LTQ02_09600 PF00700 Bacterial flagellin C-terminal helical region LTQ02_09605 PF07196 Flagellin hook IN motif LTQ02_09605 PF00669 Bacterial flagellin N-terminal helical region LTQ02_09605 PF00700 Bacterial flagellin C-terminal helical region LTQ02_09610 PF04261 Dyp-type peroxidase family LTQ02_09615 PF11143 Protein of unknown function (DUF2919) LTQ02_09635 PF03960 ArsC family LTQ02_09640 PF07687 Peptidase dimerisation domain LTQ02_09640 PF01546 Peptidase family M20/M25/M40 LTQ02_09655 PF06804 NlpB/DapX lipoprotein LTQ02_09660 PF00701 Dihydrodipicolinate synthetase family LTQ02_09665 PF01842 ACT domain LTQ02_09670 PF00578 AhpC/TSA family LTQ02_09675 PF01594 AI-2E family transporter LTQ02_09685 PF13181 Tetratricopeptide repeat LTQ02_09685 PF01435 Peptidase family M48 LTQ02_09690 PF03960 ArsC family LTQ02_09695 PF03358 NADPH-dependent FMN reductase LTQ02_09710 PF00860 Permease family LTQ02_09720 PF00586 AIR synthase related protein, N-terminal domain LTQ02_09720 PF02769 AIR synthase related protein, C-terminal domain LTQ02_09725 PF00551 Formyl transferase LTQ02_09730 PF13230 Glutamine amidotransferases class-II LTQ02_09735 PF13580 SIS domain LTQ02_09740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LTQ02_09740 PF02770 Acyl-CoA dehydrogenase, middle domain LTQ02_09740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LTQ02_09740 PF09317 Domain of unknown function (DUF1974) LTQ02_09750 PF00929 Exonuclease LTQ02_09755 PF00075 RNase H LTQ02_09760 PF08241 Methyltransferase domain LTQ02_09765 PF16123 Hydroxyacylglutathione hydrolase C-terminus LTQ02_09765 PF00753 Metallo-beta-lactamase superfamily LTQ02_09770 PF01476 LysM domain LTQ02_09770 PF01464 Transglycosylase SLT domain LTQ02_09780 PF03372 Endonuclease/Exonuclease/phosphatase family LTQ02_09785 PF00543 Nitrogen regulatory protein P-II LTQ02_09790 PF00034 Cytochrome c LTQ02_09795 PF11734 TilS substrate C-terminal domain LTQ02_09795 PF09179 TilS substrate binding domain LTQ02_09795 PF01171 PP-loop family LTQ02_09800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LTQ02_09805 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ02_09805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ02_09805 PF14579 Helix-hairpin-helix motif LTQ02_09805 PF02811 PHP domain LTQ02_09805 PF01336 OB-fold nucleic acid binding domain LTQ02_09810 PF01351 Ribonuclease HII LTQ02_09815 PF02684 Lipid-A-disaccharide synthetase LTQ02_09820 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LTQ02_09820 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_09825 PF07977 FabA-like domain LTQ02_09830 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LTQ02_09830 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_09835 PF03938 Outer membrane protein (OmpH-like) LTQ02_09840 PF07244 Surface antigen variable number repeat LTQ02_09840 PF01103 Surface antigen LTQ02_09845 PF17820 PDZ domain LTQ02_09845 PF02163 Peptidase family M50 LTQ02_09850 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LTQ02_09850 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LTQ02_09850 PF13288 DXP reductoisomerase C-terminal domain LTQ02_09860 PF01255 Putative undecaprenyl diphosphate synthase LTQ02_09865 PF01765 Ribosome recycling factor LTQ02_09870 PF00696 Amino acid kinase family LTQ02_09875 PF00889 Elongation factor TS LTQ02_09880 PF00318 Ribosomal protein S2 LTQ02_09885 PF00557 Metallopeptidase family M24 LTQ02_09890 PF01909 Nucleotidyltransferase domain LTQ02_09890 PF01966 HD domain LTQ02_09890 PF08335 GlnD PII-uridylyltransferase LTQ02_09890 PF01842 ACT domain LTQ02_09895 PF11944 Protein of unknown function (DUF3461) LTQ02_09900 PF00849 RNA pseudouridylate synthase LTQ02_09905 PF04287 tRNA pseudouridine synthase C LTQ02_09930 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LTQ02_09940 PF03806 AbgT putative transporter family LTQ02_09945 PF00444 Ribosomal protein L36 LTQ02_09950 PF01197 Ribosomal protein L31 LTQ02_09955 PF01980 tRNA-methyltransferase O LTQ02_09955 PF18389 TrmO C-terminal domain LTQ02_09960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LTQ02_09960 PF03129 Anticodon binding domain LTQ02_09960 PF04073 Aminoacyl-tRNA editing domain LTQ02_09970 PF06786 Uncharacterised protein family (UPF0253) LTQ02_09985 PF00464 Serine hydroxymethyltransferase LTQ02_10005 PF00128 Alpha amylase, catalytic domain LTQ02_10005 PF16657 Maltogenic Amylase, C-terminal domain LTQ02_10010 PF00367 phosphotransferase system, EIIB LTQ02_10010 PF02378 Phosphotransferase system, EIIC LTQ02_10015 PF00356 Bacterial regulatory proteins, lacI family LTQ02_10030 PF09383 NIL domain LTQ02_10030 PF00005 ABC transporter LTQ02_10035 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_10040 PF03180 NLPA lipoprotein LTQ02_10045 PF02264 LamB porin LTQ02_10050 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LTQ02_10055 PF07348 Syd protein (SUKH-2) LTQ02_10060 PF14489 QueF-like protein LTQ02_10060 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LTQ02_10070 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_10075 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LTQ02_10075 PF11892 Domain of unknown function (DUF3412) LTQ02_10075 PF03641 Possible lysine decarboxylase LTQ02_10080 PF01367 5'-3' exonuclease, C-terminal SAM fold LTQ02_10080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LTQ02_10085 PF01223 DNA/RNA non-specific endonuclease LTQ02_10090 PF18125 RlmM ferredoxin-like domain LTQ02_10090 PF01728 FtsJ-like methyltransferase LTQ02_10105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_10105 PF03466 LysR substrate binding domain LTQ02_10110 PF02568 Thiamine biosynthesis protein (ThiI) LTQ02_10110 PF02926 THUMP domain LTQ02_10115 PF00691 OmpA family LTQ02_10115 PF13677 Membrane MotB of proton-channel complex MotA/MotB LTQ02_10120 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_10125 PF02609 Exonuclease VII small subunit LTQ02_10130 PF00348 Polyprenyl synthetase LTQ02_10135 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LTQ02_10135 PF02779 Transketolase, pyrimidine binding domain LTQ02_10135 PF02780 Transketolase, C-terminal domain LTQ02_10145 PF04608 Phosphatidylglycerophosphatase A LTQ02_10150 PF02769 AIR synthase related protein, C-terminal domain LTQ02_10150 PF00586 AIR synthase related protein, N-terminal domain LTQ02_10155 PF01029 NusB family LTQ02_10160 PF00885 6,7-dimethyl-8-ribityllumazine synthase LTQ02_10165 PF00925 GTP cyclohydrolase II LTQ02_10165 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LTQ02_10170 PF00677 Lumazine binding domain LTQ02_10175 PF01872 RibD C-terminal domain LTQ02_10175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ02_10180 PF03477 ATP cone domain LTQ02_10185 PF00171 Aldehyde dehydrogenase family LTQ02_10190 PF00696 Amino acid kinase family LTQ02_10190 PF01472 PUA domain LTQ02_10195 PF07417 Sigma factor-binding transcriptional regulator Crl LTQ02_10200 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LTQ02_10205 PF00156 Phosphoribosyl transferase domain LTQ02_10210 PF00860 Permease family LTQ02_10215 PF07687 Peptidase dimerisation domain LTQ02_10215 PF01546 Peptidase family M20/M25/M40 LTQ02_10235 PF00962 Adenosine/AMP deaminase LTQ02_10250 PF01588 Putative tRNA binding domain LTQ02_10255 PF00356 Bacterial regulatory proteins, lacI family LTQ02_10260 PF01263 Aldose 1-epimerase LTQ02_10265 PF00288 GHMP kinases N terminal domain LTQ02_10265 PF08544 GHMP kinases C terminal LTQ02_10265 PF10509 Galactokinase galactose-binding signature LTQ02_10270 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LTQ02_10270 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LTQ02_10275 PF16363 GDP-mannose 4,6 dehydratase LTQ02_10280 PF00356 Bacterial regulatory proteins, lacI family LTQ02_10285 PF02929 Beta galactosidase small chain LTQ02_10285 PF02837 Glycosyl hydrolases family 2, sugar binding domain LTQ02_10285 PF16353 Domain of unknown function(DUF4981) LTQ02_10285 PF00703 Glycosyl hydrolases family 2 LTQ02_10285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LTQ02_10290 PF04074 YhcH/YjgK/YiaL LTQ02_10295 PF13520 Amino acid permease LTQ02_10300 PF13520 Amino acid permease LTQ02_10310 PF01204 Trehalase LTQ02_10315 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LTQ02_10315 PF00703 Glycosyl hydrolases family 2 LTQ02_10315 PF16353 Domain of unknown function(DUF4981) LTQ02_10315 PF02837 Glycosyl hydrolases family 2, sugar binding domain LTQ02_10315 PF02929 Beta galactosidase small chain LTQ02_10325 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_10330 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_10335 PF17912 MalK OB fold domain LTQ02_10335 PF00005 ABC transporter LTQ02_10340 PF01554 MatE LTQ02_10345 PF00474 Sodium:solute symporter family LTQ02_10350 PF16875 Glycosyl hydrolase family 36 N-terminal domain LTQ02_10350 PF16874 Glycosyl hydrolase family 36 C-terminal domain LTQ02_10355 PF00356 Bacterial regulatory proteins, lacI family LTQ02_10365 PF03466 LysR substrate binding domain LTQ02_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_10370 PF02417 Chromate transporter LTQ02_10390 PF00437 Type II/IV secretion system protein LTQ02_10420 PF04972 BON domain LTQ02_10420 PF00263 Bacterial type II and III secretion system protein LTQ02_10420 PF13629 Pilus formation protein N terminal region LTQ02_10445 PF02311 AraC-like ligand binding domain LTQ02_10445 PF12833 Helix-turn-helix domain LTQ02_10450 PF00501 AMP-binding enzyme LTQ02_10470 PF03466 LysR substrate binding domain LTQ02_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_10480 PF03466 LysR substrate binding domain LTQ02_10485 PF09905 DNA-binding protein VF530 LTQ02_10515 PF00009 Elongation factor Tu GTP binding domain LTQ02_10515 PF14492 Elongation Factor G, domain II LTQ02_10515 PF00679 Elongation factor G C-terminus LTQ02_10515 PF03144 Elongation factor Tu domain 2 LTQ02_10515 PF03764 Elongation factor G, domain IV LTQ02_10530 PF18429 Domain of unknown function (DUF5609) LTQ02_10540 PF01048 Phosphorylase superfamily LTQ02_10545 PF01676 Metalloenzyme superfamily LTQ02_10550 PF02885 Glycosyl transferase family, helical bundle domain LTQ02_10550 PF00591 Glycosyl transferase family, a/b domain LTQ02_10550 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LTQ02_10555 PF01791 DeoC/LacD family aldolase LTQ02_10560 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ02_10560 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ02_10560 PF07670 Nucleoside recognition LTQ02_10575 PF00009 Elongation factor Tu GTP binding domain LTQ02_10575 PF16658 Class II release factor RF3, C-terminal domain LTQ02_10575 PF03144 Elongation factor Tu domain 2 LTQ02_10580 PF00583 Acetyltransferase (GNAT) family LTQ02_10590 PF13508 Acetyltransferase (GNAT) domain LTQ02_10595 PF02036 SCP-2 sterol transfer family LTQ02_10600 PF03707 Bacterial signalling protein N terminal repeat LTQ02_10600 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_10600 PF00563 EAL domain LTQ02_10605 PF01136 Peptidase family U32 LTQ02_10610 PF01136 Peptidase family U32 LTQ02_10615 PF01554 MatE LTQ02_10625 PF13181 Tetratricopeptide repeat LTQ02_10625 PF07719 Tetratricopeptide repeat LTQ02_10630 PF00575 S1 RNA binding domain LTQ02_10630 PF03725 3' exoribonuclease family, domain 2 LTQ02_10630 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LTQ02_10630 PF01138 3' exoribonuclease family, domain 1 LTQ02_10630 PF00013 KH domain LTQ02_10635 PF00312 Ribosomal protein S15 LTQ02_10640 PF16198 tRNA pseudouridylate synthase B C-terminal domain LTQ02_10640 PF01509 TruB family pseudouridylate synthase (N terminal domain) LTQ02_10640 PF09157 Pseudouridine synthase II TruB, C-terminal LTQ02_10645 PF02033 Ribosome-binding factor A LTQ02_10650 PF11987 Translation-initiation factor 2 LTQ02_10650 PF08364 Bacterial translation initiation factor IF-2 associated region LTQ02_10650 PF04760 Translation initiation factor IF-2, N-terminal region LTQ02_10650 PF00009 Elongation factor Tu GTP binding domain LTQ02_10655 PF00575 S1 RNA binding domain LTQ02_10655 PF13184 NusA-like KH domain LTQ02_10655 PF08529 NusA N-terminal domain LTQ02_10660 PF17384 RimP C-terminal SH3 domain LTQ02_10660 PF02576 RimP N-terminal domain LTQ02_10675 PF03840 Preprotein translocase SecG subunit LTQ02_10680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ02_10680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ02_10680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ02_10680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ02_10685 PF00809 Pterin binding enzyme LTQ02_10690 PF17862 AAA+ lid domain LTQ02_10690 PF01434 Peptidase family M41 LTQ02_10690 PF06480 FtsH Extracellular LTQ02_10690 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_10695 PF01728 FtsJ-like methyltransferase LTQ02_10700 PF01985 CRS1 / YhbY (CRM) domain LTQ02_10705 PF03449 Transcription elongation factor, N-terminal LTQ02_10705 PF01272 Transcription elongation factor, GreA/GreB, C-term LTQ02_10710 PF13609 Gram-negative porin LTQ02_10715 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LTQ02_10720 PF00571 CBS domain LTQ02_10720 PF01769 Divalent cation transporter LTQ02_10720 PF03448 MgtE intracellular N domain LTQ02_10725 PF00579 tRNA synthetases class I (W and Y) LTQ02_10730 PF01476 LysM domain LTQ02_10730 PF01551 Peptidase family M23 LTQ02_10730 PF08525 Opacity-associated protein A N-terminal motif LTQ02_10735 PF00873 AcrB/AcrD/AcrF family LTQ02_10745 PF01521 Iron-sulphur cluster biosynthesis LTQ02_10750 PF00202 Aminotransferase class-III LTQ02_10755 PF01594 AI-2E family transporter LTQ02_10760 PF08468 Methyltransferase small domain N-terminal LTQ02_10760 PF05175 Methyltransferase small domain LTQ02_10765 PF00072 Response regulator receiver domain LTQ02_10765 PF01627 Hpt domain LTQ02_10765 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_10765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_10765 PF00672 HAMP domain LTQ02_10765 PF17149 Periplasmic sensor domain found in signal transduction proteins LTQ02_10770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_10775 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_10780 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ02_10780 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_10785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_10785 PF00005 ABC transporter LTQ02_10790 PF00005 ABC transporter LTQ02_10790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_10800 PF01869 BadF/BadG/BcrA/BcrD ATPase family LTQ02_10815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ02_10815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ02_10815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ02_10815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ02_10820 PF00005 ABC transporter LTQ02_10820 PF08402 TOBE domain LTQ02_10830 PF13416 Bacterial extracellular solute-binding protein LTQ02_10835 PF00909 Ammonium Transporter Family LTQ02_10840 PF00543 Nitrogen regulatory protein P-II LTQ02_10855 PF01734 Patatin-like phospholipase LTQ02_10860 PF14814 Bifunctional transglycosylase second domain LTQ02_10860 PF00912 Transglycosylase LTQ02_10860 PF00905 Penicillin binding protein transpeptidase domain LTQ02_10865 PF00271 Helicase conserved C-terminal domain LTQ02_10865 PF00270 DEAD/DEAH box helicase LTQ02_10865 PF04408 Helicase associated domain (HA2) LTQ02_10865 PF08482 ATP-dependent helicase C-terminal LTQ02_10870 PF03749 Sugar fermentation stimulation protein RE domain LTQ02_10870 PF17746 SfsA N-terminal OB domain LTQ02_10875 PF01258 Prokaryotic dksA/traR C4-type zinc finger LTQ02_10880 PF00749 tRNA synthetases class I (E and Q), catalytic domain LTQ02_10885 PF01743 Poly A polymerase head domain LTQ02_10885 PF12626 Polymerase A arginine-rich C-terminus LTQ02_10885 PF12627 Probable RNA and SrmB- binding site of polymerase A LTQ02_10890 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ02_10895 PF02548 Ketopantoate hydroxymethyltransferase LTQ02_10900 PF02569 Pantoate-beta-alanine ligase LTQ02_10910 PF00005 ABC transporter LTQ02_10915 PF00916 Sulfate permease family LTQ02_10915 PF01740 STAS domain LTQ02_10920 PF00484 Carbonic anhydrase LTQ02_10925 PF00156 Phosphoribosyl transferase domain LTQ02_10930 PF00440 Bacterial regulatory proteins, tetR family LTQ02_10935 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_10935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ02_10945 PF17831 Pyruvate dehydrogenase E1 component middle domain LTQ02_10945 PF00456 Transketolase, thiamine diphosphate binding domain LTQ02_10950 PF07729 FCD domain LTQ02_10950 PF00392 Bacterial regulatory proteins, gntR family LTQ02_10955 PF01510 N-acetylmuramoyl-L-alanine amidase LTQ02_10960 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LTQ02_10960 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LTQ02_10965 PF07963 Prokaryotic N-terminal methylation motif LTQ02_10965 PF00114 Pilin (bacterial filament) LTQ02_10970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LTQ02_10970 PF00437 Type II/IV secretion system protein LTQ02_10975 PF00482 Type II secretion system (T2SS), protein F LTQ02_10980 PF01478 Type IV leader peptidase family LTQ02_10980 PF06750 Bacterial Peptidase A24 N-terminal domain LTQ02_10985 PF01121 Dephospho-CoA kinase LTQ02_10990 PF07072 Cell division protein LTQ02_10995 PF03884 DNA gyrase inhibitor YacG LTQ02_11000 PF01245 Ribosomal protein L19 LTQ02_11005 PF01746 tRNA (Guanine-1)-methyltransferase LTQ02_11010 PF05239 PRC-barrel domain LTQ02_11010 PF01782 RimM N-terminal domain LTQ02_11015 PF00886 Ribosomal protein S16 LTQ02_11020 PF00448 SRP54-type protein, GTPase domain LTQ02_11020 PF02881 SRP54-type protein, helical bundle domain LTQ02_11020 PF02978 Signal peptide binding domain LTQ02_11025 PF01578 Cytochrome C assembly protein LTQ02_11030 PF00571 CBS domain LTQ02_11030 PF03471 Transporter associated domain LTQ02_11030 PF01595 Cyclin M transmembrane N-terminal domain LTQ02_11035 PF02664 S-Ribosylhomocysteinase (LuxS) LTQ02_11045 PF04262 Glutamate-cysteine ligase LTQ02_11050 PF05193 Peptidase M16 inactive domain LTQ02_11050 PF00675 Insulinase (Peptidase family M16) LTQ02_11055 PF09335 SNARE associated Golgi protein LTQ02_11060 PF00107 Zinc-binding dehydrogenase LTQ02_11060 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_11065 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LTQ02_11070 PF02436 Conserved carboxylase domain LTQ02_11070 PF00364 Biotin-requiring enzyme LTQ02_11070 PF00682 HMGL-like LTQ02_11075 PF04277 Oxaloacetate decarboxylase, gamma chain LTQ02_11130 PF02599 Global regulator protein family LTQ02_11135 PF00696 Amino acid kinase family LTQ02_11135 PF13840 ACT domain LTQ02_11135 PF01842 ACT domain LTQ02_11140 PF02272 DHHA1 domain LTQ02_11140 PF01411 tRNA synthetases class II (A) LTQ02_11140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LTQ02_11150 PF02464 Competence-damaged protein LTQ02_11160 PF04539 Sigma-70 region 3 LTQ02_11160 PF00140 Sigma-70 factor, region 1.2 LTQ02_11160 PF04542 Sigma-70 region 2 LTQ02_11160 PF04545 Sigma-70, region 4 LTQ02_11175 PF01975 Survival protein SurE LTQ02_11180 PF01142 tRNA pseudouridine synthase D (TruD) LTQ02_11185 PF02542 YgbB family LTQ02_11190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LTQ02_11195 PF04977 Septum formation initiator LTQ02_11200 PF03952 Enolase, N-terminal domain LTQ02_11200 PF00113 Enolase, C-terminal TIM barrel domain LTQ02_11205 PF00117 Glutamine amidotransferase class-I LTQ02_11205 PF06418 CTP synthase N-terminus LTQ02_11210 PF03819 MazG nucleotide pyrophosphohydrolase domain LTQ02_11220 PF01938 TRAM domain LTQ02_11220 PF05958 tRNA (Uracil-5-)-methyltransferase LTQ02_11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_11225 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_11225 PF01627 Hpt domain LTQ02_11225 PF00072 Response regulator receiver domain LTQ02_11225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ02_11225 PF00672 HAMP domain LTQ02_11230 PF01648 4'-phosphopantetheinyl transferase superfamily LTQ02_11235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LTQ02_11240 PF11967 Recombination protein O N terminal LTQ02_11240 PF02565 Recombination protein O C terminal LTQ02_11245 PF07650 KH domain LTQ02_11245 PF01926 50S ribosome-binding GTPase LTQ02_11250 PF00035 Double-stranded RNA binding motif LTQ02_11250 PF14622 Ribonuclease-III-like LTQ02_11255 PF10502 Signal peptidase, peptidase S26 LTQ02_11260 PF00679 Elongation factor G C-terminus LTQ02_11260 PF00009 Elongation factor Tu GTP binding domain LTQ02_11260 PF03144 Elongation factor Tu domain 2 LTQ02_11260 PF06421 GTP-binding protein LepA C-terminus LTQ02_11270 PF03888 MucB/RseB N-terminal domain LTQ02_11270 PF17188 MucB/RseB C-terminal domain LTQ02_11275 PF03873 Anti sigma-E protein RseA, C-terminal domain LTQ02_11275 PF03872 Anti sigma-E protein RseA, N-terminal domain LTQ02_11280 PF08281 Sigma-70, region 4 LTQ02_11280 PF04542 Sigma-70 region 2 LTQ02_11285 PF00890 FAD binding domain LTQ02_11285 PF02910 Fumarate reductase flavoprotein C-term LTQ02_11290 PF03937 Flavinator of succinate dehydrogenase LTQ02_11310 PF01494 FAD binding domain LTQ02_11315 PF01494 FAD binding domain LTQ02_11320 PF03695 Uncharacterised protein family (UPF0149) LTQ02_11325 PF05164 Cell division protein ZapA LTQ02_11335 PF01812 5-formyltetrahydrofolate cyclo-ligase family LTQ02_11340 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LTQ02_11345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ02_11345 PF01842 ACT domain LTQ02_11345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ02_11355 PF03466 LysR substrate binding domain LTQ02_11355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_11360 PF01810 LysE type translocator LTQ02_11365 PF00924 Mechanosensitive ion channel LTQ02_11365 PF05552 Conserved TM helix LTQ02_11370 PF01116 Fructose-bisphosphate aldolase class-II LTQ02_11375 PF00162 Phosphoglycerate kinase LTQ02_11380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ02_11380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ02_11385 PF00456 Transketolase, thiamine diphosphate binding domain LTQ02_11385 PF02780 Transketolase, C-terminal domain LTQ02_11385 PF02779 Transketolase, pyrimidine binding domain LTQ02_11390 PF02773 S-adenosylmethionine synthetase, C-terminal domain LTQ02_11390 PF00438 S-adenosylmethionine synthetase, N-terminal domain LTQ02_11390 PF02772 S-adenosylmethionine synthetase, central domain LTQ02_11400 PF10263 SprT-like family LTQ02_11400 PF17283 SprT-like zinc ribbon domain LTQ02_11405 PF04231 Endonuclease I LTQ02_11415 PF04452 RNA methyltransferase LTQ02_11420 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LTQ02_11420 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LTQ02_11425 PF02622 Uncharacterized ACR, COG1678 LTQ02_11430 PF03652 Holliday junction resolvase LTQ02_11440 PF00437 Type II/IV secretion system protein LTQ02_11445 PF00437 Type II/IV secretion system protein LTQ02_11450 PF01168 Alanine racemase, N-terminal domain LTQ02_11455 PF03807 NADP oxidoreductase coenzyme F420-dependent LTQ02_11455 PF14748 Pyrroline-5-carboxylate reductase dimerisation LTQ02_11460 PF02325 YGGT family LTQ02_11465 PF02594 Uncharacterised ACR, YggU family COG1872 LTQ02_11480 PF06969 HemN C-terminal domain LTQ02_11480 PF04055 Radical SAM superfamily LTQ02_11485 PF04960 Glutaminase LTQ02_11490 PF02390 Putative methyltransferase LTQ02_11495 PF00633 Helix-hairpin-helix motif LTQ02_11495 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ02_11495 PF14815 NUDIX domain LTQ02_11500 PF04362 Bacterial Fe(2+) trafficking LTQ02_11505 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LTQ02_11505 PF01464 Transglycosylase SLT domain LTQ02_11545 PF12729 Four helix bundle sensory module for signal transduction LTQ02_11545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_11545 PF00672 HAMP domain LTQ02_11635 PF00072 Response regulator receiver domain LTQ02_11655 PF03739 Lipopolysaccharide export system permease LptF/LptG LTQ02_11660 PF03739 Lipopolysaccharide export system permease LptF/LptG LTQ02_11665 PF00883 Cytosol aminopeptidase family, catalytic domain LTQ02_11665 PF02789 Cytosol aminopeptidase family, N-terminal domain LTQ02_11670 PF04364 DNA polymerase III chi subunit, HolC LTQ02_11675 PF00133 tRNA synthetases class I (I, L, M and V) LTQ02_11675 PF10458 Valyl tRNA synthetase tRNA binding arm LTQ02_11675 PF08264 Anticodon-binding domain of tRNA LTQ02_11680 PF01435 Peptidase family M48 LTQ02_11685 PF05987 Bacterial protein of unknown function (DUF898) LTQ02_11695 PF00583 Acetyltransferase (GNAT) family LTQ02_11705 PF06877 Regulator of ribonuclease activity B LTQ02_11715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ02_11715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ02_11720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ02_11720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ02_11725 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LTQ02_11725 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LTQ02_11730 PF01042 Endoribonuclease L-PSP LTQ02_11735 PF01553 Acyltransferase LTQ02_11740 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LTQ02_11745 PF01722 BolA-like protein LTQ02_11755 PF05494 MlaC protein LTQ02_11760 PF02470 MlaD protein LTQ02_11765 PF02405 Permease MlaE LTQ02_11770 PF00005 ABC transporter LTQ02_11775 PF01699 Sodium/calcium exchanger protein LTQ02_11780 PF00571 CBS domain LTQ02_11780 PF01380 SIS domain LTQ02_11795 PF03968 OstA-like protein LTQ02_11800 PF00005 ABC transporter LTQ02_11800 PF12399 Branched-chain amino acid ATP-binding cassette transporter LTQ02_11810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LTQ02_11815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_11820 PF03668 P-loop ATPase protein family LTQ02_11825 PF00381 PTS HPr component phosphorylation site LTQ02_11830 PF00571 CBS domain LTQ02_11830 PF01769 Divalent cation transporter LTQ02_11830 PF03448 MgtE intracellular N domain LTQ02_11835 PF01523 Putative modulator of DNA gyrase LTQ02_11840 PF04751 Protein of unknown function (DUF615) LTQ02_11845 PF00005 ABC transporter LTQ02_11850 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_11860 PF02441 Flavoprotein LTQ02_11865 PF08245 Mur ligase middle domain LTQ02_11865 PF01225 Mur ligase family, catalytic domain LTQ02_11865 PF02875 Mur ligase family, glutamate ligase domain LTQ02_11870 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LTQ02_11880 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LTQ02_11890 PF01103 Surface antigen LTQ02_11890 PF07244 Surface antigen variable number repeat LTQ02_11890 PF17243 POTRA domain TamA domain 1 LTQ02_11895 PF01625 Peptide methionine sulfoxide reductase LTQ02_11900 PF06526 Protein of unknown function (DUF1107) LTQ02_11905 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LTQ02_11910 PF10795 Protein of unknown function (DUF2607) LTQ02_11920 PF00005 ABC transporter LTQ02_11945 PF02080 TrkA-C domain LTQ02_11945 PF03600 Citrate transporter LTQ02_11950 PF00009 Elongation factor Tu GTP binding domain LTQ02_11955 PF01507 Phosphoadenosine phosphosulfate reductase family LTQ02_11960 PF02872 5'-nucleotidase, C-terminal domain LTQ02_11960 PF00149 Calcineurin-like phosphoesterase LTQ02_12005 PF13673 Acetyltransferase (GNAT) domain LTQ02_12015 PF04225 Opacity-associated protein A LysM-like domain LTQ02_12015 PF08525 Opacity-associated protein A N-terminal motif LTQ02_12020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_12020 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ02_12030 PF01196 Ribosomal protein L17 LTQ02_12035 PF01000 RNA polymerase Rpb3/RpoA insert domain LTQ02_12035 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LTQ02_12035 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LTQ02_12040 PF00163 Ribosomal protein S4/S9 N-terminal domain LTQ02_12040 PF01479 S4 domain LTQ02_12045 PF00411 Ribosomal protein S11 LTQ02_12050 PF00416 Ribosomal protein S13/S18 LTQ02_12055 PF00444 Ribosomal protein L36 LTQ02_12060 PF00344 SecY translocase LTQ02_12065 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LTQ02_12070 PF00327 Ribosomal protein L30p/L7e LTQ02_12075 PF00333 Ribosomal protein S5, N-terminal domain LTQ02_12075 PF03719 Ribosomal protein S5, C-terminal domain LTQ02_12080 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LTQ02_12085 PF00347 Ribosomal protein L6 LTQ02_12090 PF00410 Ribosomal protein S8 LTQ02_12095 PF00253 Ribosomal protein S14p/S29e LTQ02_12100 PF00281 Ribosomal protein L5 LTQ02_12100 PF00673 ribosomal L5P family C-terminus LTQ02_12105 PF00467 KOW motif LTQ02_12105 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LTQ02_12110 PF00238 Ribosomal protein L14p/L23e LTQ02_12115 PF00366 Ribosomal protein S17 LTQ02_12120 PF00831 Ribosomal L29 protein LTQ02_12125 PF00252 Ribosomal protein L16p/L10e LTQ02_12130 PF00189 Ribosomal protein S3, C-terminal domain LTQ02_12130 PF07650 KH domain LTQ02_12135 PF00237 Ribosomal protein L22p/L17e LTQ02_12140 PF00203 Ribosomal protein S19 LTQ02_12145 PF00181 Ribosomal Proteins L2, RNA binding domain LTQ02_12145 PF03947 Ribosomal Proteins L2, C-terminal domain LTQ02_12150 PF00276 Ribosomal protein L23 LTQ02_12155 PF00573 Ribosomal protein L4/L1 family LTQ02_12160 PF00297 Ribosomal protein L3 LTQ02_12165 PF00338 Ribosomal protein S10p/S20e LTQ02_12170 PF03143 Elongation factor Tu C-terminal domain LTQ02_12170 PF03144 Elongation factor Tu domain 2 LTQ02_12170 PF00009 Elongation factor Tu GTP binding domain LTQ02_12175 PF03144 Elongation factor Tu domain 2 LTQ02_12175 PF00679 Elongation factor G C-terminus LTQ02_12175 PF14492 Elongation Factor G, domain II LTQ02_12175 PF03764 Elongation factor G, domain IV LTQ02_12175 PF00009 Elongation factor Tu GTP binding domain LTQ02_12180 PF00177 Ribosomal protein S7p/S5e LTQ02_12185 PF00164 Ribosomal protein S12/S23 LTQ02_12195 PF02635 DsrE/DsrF-like family LTQ02_12200 PF02635 DsrE/DsrF-like family LTQ02_12205 PF13309 HTH domain LTQ02_12205 PF08348 YheO-like PAS domain LTQ02_12210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_12210 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ02_12220 PF04102 SlyX LTQ02_12225 PF01112 Asparaginase LTQ02_12230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_12240 PF02254 TrkA-N domain LTQ02_12240 PF00999 Sodium/hydrogen exchanger family LTQ02_12245 PF02525 Flavodoxin-like fold LTQ02_12250 PF12848 ABC transporter LTQ02_12250 PF00005 ABC transporter LTQ02_12260 PF00561 alpha/beta hydrolase fold LTQ02_12265 PF06794 Uncharacterised protein family (UPF0270) LTQ02_12270 PF00485 Phosphoribulokinase / Uridine kinase family LTQ02_12275 PF00027 Cyclic nucleotide-binding domain LTQ02_12275 PF13545 Crp-like helix-turn-helix domain LTQ02_12285 PF00171 Aldehyde dehydrogenase family LTQ02_12290 PF04958 Arginine N-succinyltransferase beta subunit LTQ02_12295 PF00202 Aminotransferase class-III LTQ02_12300 PF00117 Glutamine amidotransferase class-I LTQ02_12305 PF04231 Endonuclease I LTQ02_12325 PF00579 tRNA synthetases class I (W and Y) LTQ02_12330 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_12335 PF00834 Ribulose-phosphate 3 epimerase family LTQ02_12340 PF02086 D12 class N6 adenine-specific DNA methyltransferase LTQ02_12350 PF01761 3-dehydroquinate synthase LTQ02_12355 PF01202 Shikimate kinase LTQ02_12360 PF03958 Bacterial type II/III secretion system short domain LTQ02_12360 PF00263 Bacterial type II and III secretion system protein LTQ02_12360 PF11741 AMIN domain LTQ02_12360 PF07660 Secretin and TonB N terminus short domain LTQ02_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_12390 PF03466 LysR substrate binding domain LTQ02_12400 PF08534 Redoxin LTQ02_12400 PF00462 Glutaredoxin LTQ02_12405 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_12405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ02_12410 PF01042 Endoribonuclease L-PSP LTQ02_12420 PF00583 Acetyltransferase (GNAT) family LTQ02_12420 PF14698 Argininosuccinate lyase C-terminal LTQ02_12420 PF00206 Lyase LTQ02_12425 PF00764 Arginosuccinate synthase LTQ02_12430 PF00696 Amino acid kinase family LTQ02_12435 PF01118 Semialdehyde dehydrogenase, NAD binding domain LTQ02_12435 PF02774 Semialdehyde dehydrogenase, dimerisation domain LTQ02_12440 PF07687 Peptidase dimerisation domain LTQ02_12440 PF01546 Peptidase family M20/M25/M40 LTQ02_12445 PF00311 Phosphoenolpyruvate carboxylase LTQ02_12455 PF02219 Methylenetetrahydrofolate reductase LTQ02_12460 PF00696 Amino acid kinase family LTQ02_12460 PF03447 Homoserine dehydrogenase, NAD binding domain LTQ02_12460 PF00742 Homoserine dehydrogenase LTQ02_12465 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ02_12470 PF01340 Met Apo-repressor, MetJ LTQ02_12475 PF00390 Malic enzyme, N-terminal domain LTQ02_12475 PF03949 Malic enzyme, NAD binding domain LTQ02_12480 PF01197 Ribosomal protein L31 LTQ02_12485 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LTQ02_12485 PF18074 Primosomal protein N C-terminal domain LTQ02_12485 PF00270 DEAD/DEAH box helicase LTQ02_12485 PF00271 Helicase conserved C-terminal domain LTQ02_12485 PF17764 3′ DNA-binding domain (3′BD) LTQ02_12490 PF00356 Bacterial regulatory proteins, lacI family LTQ02_12500 PF00227 Proteasome subunit LTQ02_12505 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_12505 PF07724 AAA domain (Cdc48 subfamily) LTQ02_12510 PF01040 UbiA prenyltransferase family LTQ02_12515 PF03737 Aldolase/RraA LTQ02_12520 PF06005 Cell division protein ZapB LTQ02_12525 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LTQ02_12540 PF05656 Protein of unknown function (DUF805) LTQ02_12550 PF00121 Triosephosphate isomerase LTQ02_12555 PF00365 Phosphofructokinase LTQ02_12560 PF01545 Cation efflux family LTQ02_12560 PF16916 Dimerisation domain of Zinc Transporter LTQ02_12570 PF00072 Response regulator receiver domain LTQ02_12570 PF00486 Transcriptional regulatory protein, C terminal LTQ02_12575 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ02_12575 PF00672 HAMP domain LTQ02_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_12575 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_12580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LTQ02_12580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LTQ02_12585 PF00588 SpoU rRNA Methylase family LTQ02_12590 PF04186 FxsA cytoplasmic membrane protein LTQ02_12595 PF10415 Fumarase C C-terminus LTQ02_12595 PF00206 Lyase LTQ02_12600 PF03605 Anaerobic c4-dicarboxylate membrane transporter LTQ02_12605 PF03606 C4-dicarboxylate anaerobic carrier LTQ02_12615 PF00696 Amino acid kinase family LTQ02_12620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ02_12620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ02_12625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LTQ02_12625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTQ02_12630 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LTQ02_12630 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LTQ02_12635 PF01316 Arginine repressor, DNA binding domain LTQ02_12635 PF02863 Arginine repressor, C-terminal domain LTQ02_12640 PF11412 Disulphide bond corrector protein DsbC LTQ02_12640 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ02_12645 PF00072 Response regulator receiver domain LTQ02_12645 PF00196 Bacterial regulatory proteins, luxR family LTQ02_12650 PF03471 Transporter associated domain LTQ02_12650 PF00999 Sodium/hydrogen exchanger family LTQ02_12650 PF02080 TrkA-C domain LTQ02_12660 PF00474 Sodium:solute symporter family LTQ02_12670 PF10415 Fumarase C C-terminus LTQ02_12670 PF00206 Lyase LTQ02_12675 PF00072 Response regulator receiver domain LTQ02_12675 PF01627 Hpt domain LTQ02_12675 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_12675 PF00672 HAMP domain LTQ02_12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_12680 PF12832 MFS_1 like family LTQ02_12695 PF16177 Acetyl-coenzyme A synthetase N-terminus LTQ02_12695 PF00501 AMP-binding enzyme LTQ02_12695 PF13193 AMP-binding enzyme C-terminal domain LTQ02_12700 PF01220 Dehydroquinase class II LTQ02_12705 PF00364 Biotin-requiring enzyme LTQ02_12710 PF02785 Biotin carboxylase C-terminal domain LTQ02_12710 PF00289 Biotin carboxylase, N-terminal domain LTQ02_12710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LTQ02_12720 PF01207 Dihydrouridine synthase (Dus) LTQ02_12725 PF02954 Bacterial regulatory protein, Fis family LTQ02_12730 PF13411 MerR HTH family regulatory protein LTQ02_12735 PF01808 AICARFT/IMPCHase bienzyme LTQ02_12735 PF02142 MGS-like domain LTQ02_12740 PF02843 Phosphoribosylglycinamide synthetase, C domain LTQ02_12740 PF02844 Phosphoribosylglycinamide synthetase, N domain LTQ02_12740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LTQ02_12750 PF00216 Bacterial DNA-binding protein LTQ02_12755 PF00571 CBS domain LTQ02_12755 PF01595 Cyclin M transmembrane N-terminal domain LTQ02_12760 PF04222 Protein of unknown function (DUF416) LTQ02_12775 PF01208 Uroporphyrinogen decarboxylase (URO-D) LTQ02_12780 PF09297 NADH pyrophosphatase zinc ribbon domain LTQ02_12780 PF00293 NUDIX domain LTQ02_12785 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LTQ02_12790 PF05000 RNA polymerase Rpb1, domain 4 LTQ02_12790 PF04983 RNA polymerase Rpb1, domain 3 LTQ02_12790 PF04998 RNA polymerase Rpb1, domain 5 LTQ02_12790 PF04997 RNA polymerase Rpb1, domain 1 LTQ02_12790 PF00623 RNA polymerase Rpb1, domain 2 LTQ02_12795 PF10385 RNA polymerase beta subunit external 1 domain LTQ02_12795 PF00562 RNA polymerase Rpb2, domain 6 LTQ02_12795 PF04565 RNA polymerase Rpb2, domain 3 LTQ02_12795 PF04560 RNA polymerase Rpb2, domain 7 LTQ02_12795 PF04563 RNA polymerase beta subunit LTQ02_12795 PF04561 RNA polymerase Rpb2, domain 2 LTQ02_12800 PF00542 Ribosomal protein L7/L12 C-terminal domain LTQ02_12800 PF16320 Ribosomal protein L7/L12 dimerisation domain LTQ02_12805 PF00466 Ribosomal protein L10 LTQ02_12810 PF00687 Ribosomal protein L1p/L10e family LTQ02_12815 PF00298 Ribosomal protein L11, RNA binding domain LTQ02_12815 PF03946 Ribosomal protein L11, N-terminal domain LTQ02_12820 PF00467 KOW motif LTQ02_12820 PF02357 Transcription termination factor nusG LTQ02_12825 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LTQ02_12830 PF03143 Elongation factor Tu C-terminal domain LTQ02_12830 PF00009 Elongation factor Tu GTP binding domain LTQ02_12830 PF03144 Elongation factor Tu domain 2 LTQ02_12855 PF00485 Phosphoribulokinase / Uridine kinase family LTQ02_12860 PF02237 Biotin protein ligase C terminal domain LTQ02_12860 PF03099 Biotin/lipoate A/B protein ligase family LTQ02_12860 PF08279 HTH domain LTQ02_12865 PF01565 FAD binding domain LTQ02_12865 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LTQ02_12875 PF13091 PLD-like domain LTQ02_12975 PF01177 Asp/Glu/Hydantoin racemase LTQ02_12985 PF07715 TonB-dependent Receptor Plug Domain LTQ02_12985 PF00593 TonB dependent receptor LTQ02_12990 PF05958 tRNA (Uracil-5-)-methyltransferase LTQ02_13000 PF00440 Bacterial regulatory proteins, tetR family LTQ02_13010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_13010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ02_13015 PF01554 MatE LTQ02_13020 PF04072 Leucine carboxyl methyltransferase LTQ02_13025 PF01726 LexA DNA binding domain LTQ02_13025 PF00717 Peptidase S24-like LTQ02_13030 PF01219 Prokaryotic diacylglycerol kinase LTQ02_13035 PF01553 Acyltransferase LTQ02_13040 PF01040 UbiA prenyltransferase family LTQ02_13045 PF04345 Chorismate lyase LTQ02_13050 PF03748 Flagellar basal body-associated protein FliL LTQ02_13055 PF01694 Rhomboid family LTQ02_13055 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LTQ02_13060 PF00581 Rhodanese-like domain LTQ02_13065 PF00140 Sigma-70 factor, region 1.2 LTQ02_13065 PF04542 Sigma-70 region 2 LTQ02_13065 PF04545 Sigma-70, region 4 LTQ02_13070 PF18075 FtsX extracellular domain LTQ02_13075 PF00005 ABC transporter LTQ02_13095 PF01914 MarC family integral membrane protein LTQ02_13135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ02_13135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ02_13140 PF01022 Bacterial regulatory protein, arsR family LTQ02_13145 PF08668 HDOD domain LTQ02_13145 PF00563 EAL domain LTQ02_13150 PF01810 LysE type translocator LTQ02_13155 PF12146 Serine aminopeptidase, S33 LTQ02_13175 PF03942 DTW domain LTQ02_13180 PF00563 EAL domain LTQ02_13180 PF08495 FIST N domain LTQ02_13180 PF10442 FIST C domain LTQ02_13180 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_13185 PF00563 EAL domain LTQ02_13185 PF08495 FIST N domain LTQ02_13185 PF10442 FIST C domain LTQ02_13185 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_13190 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_13195 PF02899 Phage integrase, N-terminal SAM-like domain LTQ02_13195 PF00589 Phage integrase family LTQ02_13205 PF01678 Diaminopimelate epimerase LTQ02_13210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LTQ02_13210 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LTQ02_13220 PF01491 Frataxin-like domain LTQ02_13225 PF12633 Adenylate cyclase NT domain LTQ02_13225 PF01295 Adenylate cyclase, class-I LTQ02_13230 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LTQ02_13230 PF03900 Porphobilinogen deaminase, C-terminal domain LTQ02_13235 PF02602 Uroporphyrinogen-III synthase HemD LTQ02_13240 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LTQ02_13245 PF07219 HemY protein N-terminus LTQ02_13295 PF00175 Oxidoreductase NAD-binding domain LTQ02_13300 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_13300 PF00175 Oxidoreductase NAD-binding domain LTQ02_13305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LTQ02_13315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_13315 PF07497 Rho termination factor, RNA-binding domain LTQ02_13315 PF07498 Rho termination factor, N-terminal domain LTQ02_13320 PF00085 Thioredoxin LTQ02_13325 PF00271 Helicase conserved C-terminal domain LTQ02_13325 PF00270 DEAD/DEAH box helicase LTQ02_13330 PF02541 Ppx/GppA phosphatase family LTQ02_13335 PF02592 Putative vitamin uptake transporter LTQ02_13345 PF00270 DEAD/DEAH box helicase LTQ02_13345 PF00271 Helicase conserved C-terminal domain LTQ02_13345 PF00570 HRDC domain LTQ02_13345 PF16124 RecQ zinc-binding LTQ02_13345 PF09382 RQC domain LTQ02_13350 PF00892 EamA-like transporter family LTQ02_13355 PF02311 AraC-like ligand binding domain LTQ02_13355 PF12833 Helix-turn-helix domain LTQ02_13360 PF01810 LysE type translocator LTQ02_13370 PF08534 Redoxin LTQ02_13375 PF13361 UvrD-like helicase C-terminal domain LTQ02_13375 PF00580 UvrD/REP helicase N-terminal domain LTQ02_13385 PF05114 Protein of unknown function (DUF692) LTQ02_13405 PF07690 Major Facilitator Superfamily LTQ02_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_13410 PF03466 LysR substrate binding domain LTQ02_13415 PF00557 Metallopeptidase family M24 LTQ02_13415 PF01321 Creatinase/Prolidase N-terminal domain LTQ02_13415 PF00557 Metallopeptidase family M24 LTQ02_13415 PF01321 Creatinase/Prolidase N-terminal domain LTQ02_13420 PF04055 Radical SAM superfamily LTQ02_13420 PF06968 Biotin and Thiamin Synthesis associated domain LTQ02_13425 PF05690 Thiazole biosynthesis protein ThiG LTQ02_13430 PF02597 ThiS family LTQ02_13435 PF00899 ThiF family LTQ02_13440 PF02581 Thiamine monophosphate synthase LTQ02_13445 PF13667 ThiC-associated domain LTQ02_13445 PF01964 Radical SAM ThiC family LTQ02_13450 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LTQ02_13455 PF07732 Multicopper oxidase LTQ02_13455 PF07731 Multicopper oxidase LTQ02_13455 PF00394 Multicopper oxidase LTQ02_13500 PF12724 Flavodoxin domain LTQ02_13505 PF02386 Cation transport protein LTQ02_13510 PF09186 Domain of unknown function (DUF1949) LTQ02_13510 PF01205 Uncharacterized protein family UPF0029 LTQ02_13515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LTQ02_13515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LTQ02_13515 PF00378 Enoyl-CoA hydratase/isomerase LTQ02_13520 PF02803 Thiolase, C-terminal domain LTQ02_13520 PF00108 Thiolase, N-terminal domain LTQ02_13525 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_13525 PF00107 Zinc-binding dehydrogenase LTQ02_13530 PF03466 LysR substrate binding domain LTQ02_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_13540 PF01206 Sulfurtransferase TusA LTQ02_13550 PF01169 Uncharacterized protein family UPF0016 LTQ02_13555 PF02091 Glycyl-tRNA synthetase alpha subunit LTQ02_13560 PF05746 DALR anticodon binding domain LTQ02_13560 PF02092 Glycyl-tRNA synthetase beta subunit LTQ02_13565 PF00128 Alpha amylase, catalytic domain LTQ02_13570 PF00155 Aminotransferase class I and II LTQ02_13575 PF00011 Hsp20/alpha crystallin family LTQ02_13580 PF01751 Toprim domain LTQ02_13580 PF00204 DNA gyrase B LTQ02_13580 PF00986 DNA gyrase B subunit, carboxyl terminus LTQ02_13580 PF18053 DNA gyrase B subunit insert domain LTQ02_13580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_13585 PF02463 RecF/RecN/SMC N terminal domain LTQ02_13590 PF02767 DNA polymerase III beta subunit, central domain LTQ02_13590 PF00712 DNA polymerase III beta subunit, N-terminal domain LTQ02_13590 PF02768 DNA polymerase III beta subunit, C-terminal domain LTQ02_13595 PF11638 DnaA N-terminal domain LTQ02_13595 PF00308 Bacterial dnaA protein LTQ02_13595 PF08299 Bacterial dnaA protein helix-turn-helix LTQ02_13600 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_13605 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_13610 PF00005 ABC transporter LTQ02_13615 PF00468 Ribosomal protein L34 LTQ02_13620 PF00825 Ribonuclease P LTQ02_13625 PF01809 Putative membrane protein insertion efficiency factor LTQ02_13630 PF02096 60Kd inner membrane protein LTQ02_13630 PF14849 YidC periplasmic domain LTQ02_13635 PF01926 50S ribosome-binding GTPase LTQ02_13635 PF12631 MnmE helical domain LTQ02_13635 PF10396 GTP-binding protein TrmE N-terminus LTQ02_13640 PF00258 Flavodoxin LTQ02_13645 PF01134 Glucose inhibited division protein A LTQ02_13645 PF13932 GidA associated domain LTQ02_13650 PF02527 rRNA small subunit methyltransferase G LTQ02_13655 PF13614 AAA domain LTQ02_13660 PF17762 HTH domain found in ParB protein LTQ02_13660 PF02195 ParB-like nuclease domain LTQ02_13665 PF03899 ATP synthase I chain LTQ02_13670 PF00119 ATP synthase A chain LTQ02_13675 PF00137 ATP synthase subunit C LTQ02_13680 PF00430 ATP synthase B/B' CF(0) LTQ02_13685 PF00213 ATP synthase delta (OSCP) subunit LTQ02_13690 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ02_13690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_13690 PF00306 ATP synthase alpha/beta chain, C terminal domain LTQ02_13695 PF00231 ATP synthase LTQ02_13700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_13700 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ02_13705 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LTQ02_13705 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LTQ02_13710 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_13710 PF12804 MobA-like NTP transferase domain LTQ02_13715 PF07690 Major Facilitator Superfamily LTQ02_13720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_13720 PF03466 LysR substrate binding domain LTQ02_13725 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_13725 PF00585 C-terminal regulatory domain of Threonine dehydratase LTQ02_13730 PF00920 Dehydratase family LTQ02_13735 PF01063 Amino-transferase class IV LTQ02_13745 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ02_13745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ02_13745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ02_13760 PF01323 DSBA-like thioredoxin domain LTQ02_13765 PF01636 Phosphotransferase enzyme family LTQ02_13770 PF13746 4Fe-4S dicluster domain LTQ02_13770 PF12801 4Fe-4S binding domain LTQ02_13770 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LTQ02_13775 PF06288 Protein of unknown function (DUF1040) LTQ02_13785 PF07070 SpoOM protein LTQ02_13790 PF03006 Haemolysin-III related LTQ02_13800 PF02386 Cation transport protein LTQ02_13805 PF02080 TrkA-C domain LTQ02_13805 PF02254 TrkA-N domain LTQ02_13810 PF01029 NusB family LTQ02_13810 PF01189 16S rRNA methyltransferase RsmB/F LTQ02_13815 PF02911 Formyl transferase, C-terminal domain LTQ02_13815 PF00551 Formyl transferase LTQ02_13820 PF01327 Polypeptide deformylase LTQ02_13830 PF02481 DNA recombination-mediator protein A LTQ02_13830 PF17782 DprA winged helix domain LTQ02_13835 PF04361 Protein of unknown function (DUF494) LTQ02_13840 PF01396 Topoisomerase DNA binding C4 zinc finger LTQ02_13845 PF02222 ATP-grasp domain LTQ02_13845 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LTQ02_13850 PF00731 AIR carboxylase LTQ02_13855 PF01300 Telomere recombination LTQ02_13860 PF01218 Coproporphyrinogen III oxidase LTQ02_13865 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LTQ02_13865 PF01488 Shikimate / quinate 5-dehydrogenase LTQ02_13865 PF08501 Shikimate dehydrogenase substrate binding domain LTQ02_13870 PF07369 Protein of unknown function (DUF1488) LTQ02_13875 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_13920 PF03466 LysR substrate binding domain LTQ02_13925 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LTQ02_13925 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LTQ02_13930 PF04380 Membrane fusogenic activity LTQ02_13935 PF00873 AcrB/AcrD/AcrF family LTQ02_13940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_13945 PF00440 Bacterial regulatory proteins, tetR family LTQ02_13955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ02_13985 PF00005 ABC transporter LTQ02_13985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_13990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_13995 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_14000 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_14000 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ02_14040 PF03793 PASTA domain LTQ02_14040 PF00069 Protein kinase domain LTQ02_14045 PF03116 NQR2, RnfD, RnfE family LTQ02_14060 PF00069 Protein kinase domain LTQ02_14065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LTQ02_14065 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_14070 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LTQ02_14075 PF01432 Peptidase family M3 LTQ02_14080 PF01037 Lrp/AsnC ligand binding domain LTQ02_14090 PF04445 Putative SAM-dependent methyltransferase LTQ02_14100 PF00892 EamA-like transporter family LTQ02_14105 PF00582 Universal stress protein family LTQ02_14110 PF00210 Ferritin-like domain LTQ02_14115 PF10625 Universal stress protein B (UspB) LTQ02_14130 PF02646 RmuC family LTQ02_14135 PF01209 ubiE/COQ5 methyltransferase family LTQ02_14140 PF02036 SCP-2 sterol transfer family LTQ02_14145 PF03109 ABC1 family LTQ02_14150 PF02416 mttA/Hcf106 family LTQ02_14155 PF02416 mttA/Hcf106 family LTQ02_14160 PF00902 Sec-independent protein translocase protein (TatC) LTQ02_14165 PF01026 TatD related DNase LTQ02_14170 PF00490 Delta-aminolevulinic acid dehydratase LTQ02_14180 PF01367 5'-3' exonuclease, C-terminal SAM fold LTQ02_14180 PF00476 DNA polymerase family A LTQ02_14180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LTQ02_14180 PF01612 3'-5' exonuclease LTQ02_14190 PF01926 50S ribosome-binding GTPase LTQ02_14195 PF00034 Cytochrome c LTQ02_14205 PF04220 Der GTPase activator (YihI) LTQ02_14210 PF10675 Protein of unknown function (DUF2489) LTQ02_14220 PF00563 EAL domain LTQ02_14220 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_14220 PF03707 Bacterial signalling protein N terminal repeat LTQ02_14225 PF02954 Bacterial regulatory protein, Fis family LTQ02_14225 PF00072 Response regulator receiver domain LTQ02_14225 PF00158 Sigma-54 interaction domain LTQ02_14230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_14230 PF00989 PAS fold LTQ02_14230 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_14240 PF00120 Glutamine synthetase, catalytic domain LTQ02_14240 PF03951 Glutamine synthetase, beta-Grasp domain LTQ02_14260 PF03631 Virulence factor BrkB LTQ02_14265 PF02580 D-Tyr-tRNA(Tyr) deacylase LTQ02_14270 PF09500 Putative thioesterase (yiiD_Cterm) LTQ02_14270 PF00583 Acetyltransferase (GNAT) family LTQ02_14280 PF01293 Phosphoenolpyruvate carboxykinase LTQ02_14285 PF01430 Hsp33 protein LTQ02_14290 PF01479 S4 domain LTQ02_14295 PF11356 Type II secretion system protein C LTQ02_14300 PF03958 Bacterial type II/III secretion system short domain LTQ02_14300 PF00263 Bacterial type II and III secretion system protein LTQ02_14305 PF00437 Type II/IV secretion system protein LTQ02_14310 PF00482 Type II secretion system (T2SS), protein F LTQ02_14315 PF07963 Prokaryotic N-terminal methylation motif LTQ02_14315 PF08334 Type II secretion system (T2SS), protein G LTQ02_14320 PF12019 Type II transport protein GspH LTQ02_14325 PF07963 Prokaryotic N-terminal methylation motif LTQ02_14325 PF02501 Type II secretion system (T2SS), protein I LTQ02_14330 PF07963 Prokaryotic N-terminal methylation motif LTQ02_14330 PF11612 Type II secretion system (T2SS), protein J LTQ02_14335 PF03934 Type II secretion system (T2SS), protein K LTQ02_14340 PF12693 GspL periplasmic domain LTQ02_14340 PF05134 Type II secretion system (T2SS), protein L LTQ02_14345 PF04612 Type II secretion system (T2SS), protein M LTQ02_14350 PF01203 Type II secretion system (T2SS), protein N LTQ02_14365 PF00293 NUDIX domain LTQ02_14370 PF01521 Iron-sulphur cluster biosynthesis LTQ02_14370 PF01106 NifU-like domain LTQ02_14375 PF00156 Phosphoribosyl transferase domain LTQ02_14390 PF17674 HHH domain LTQ02_14390 PF00575 S1 RNA binding domain LTQ02_14390 PF09371 Tex-like protein N-terminal domain LTQ02_14390 PF16921 Tex protein YqgF-like domain LTQ02_14395 PF01272 Transcription elongation factor, GreA/GreB, C-term LTQ02_14395 PF03449 Transcription elongation factor, N-terminal LTQ02_14400 PF00486 Transcriptional regulatory protein, C terminal LTQ02_14400 PF00072 Response regulator receiver domain LTQ02_14405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_14405 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_14405 PF00672 HAMP domain LTQ02_14410 PF17191 RecG wedge domain LTQ02_14410 PF00271 Helicase conserved C-terminal domain LTQ02_14410 PF00270 DEAD/DEAH box helicase LTQ02_14415 PF02824 TGS domain LTQ02_14415 PF04607 Region found in RelA / SpoT proteins LTQ02_14415 PF13291 ACT domain LTQ02_14420 PF01192 RNA polymerase Rpb6 LTQ02_14425 PF00625 Guanylate kinase LTQ02_14430 PF00860 Permease family LTQ02_14460 PF00313 'Cold-shock' DNA-binding domain LTQ02_14465 PF08340 Domain of unknown function (DUF1732) LTQ02_14465 PF03755 YicC-like family, N-terminal region LTQ02_14475 PF00156 Phosphoribosyl transferase domain LTQ02_14480 PF03279 Bacterial lipid A biosynthesis acyltransferase LTQ02_14485 PF00440 Bacterial regulatory proteins, tetR family LTQ02_14490 PF04127 DNA / pantothenate metabolism flavoprotein LTQ02_14490 PF02441 Flavoprotein LTQ02_14495 PF04002 RadC-like JAB domain LTQ02_14500 PF00830 Ribosomal L28 family LTQ02_14505 PF00471 Ribosomal protein L33 LTQ02_14515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LTQ02_14515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LTQ02_14515 PF06827 Zinc finger found in FPG and IleRS LTQ02_14525 PF01219 Prokaryotic diacylglycerol kinase LTQ02_14530 PF05686 Glycosyl transferase family 90 LTQ02_14535 PF01467 Cytidylyltransferase-like LTQ02_14540 PF00535 Glycosyl transferase family 2 LTQ02_14545 PF00535 Glycosyl transferase family 2 LTQ02_14550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LTQ02_14565 PF02719 Polysaccharide biosynthesis protein LTQ02_14570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LTQ02_14580 PF00117 Glutamine amidotransferase class-I LTQ02_14585 PF00977 Histidine biosynthesis protein LTQ02_14590 PF02348 Cytidylyltransferase LTQ02_14600 PF03102 NeuB family LTQ02_14600 PF08666 SAF domain LTQ02_14610 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LTQ02_14615 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LTQ02_14620 PF03279 Bacterial lipid A biosynthesis acyltransferase LTQ02_14625 PF01370 NAD dependent epimerase/dehydratase family LTQ02_14630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LTQ02_14630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LTQ02_14630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LTQ02_14635 PF08360 QacR-like protein, C-terminal region LTQ02_14635 PF00440 Bacterial regulatory proteins, tetR family LTQ02_14645 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_14645 PF06426 Serine acetyltransferase, N-terminal LTQ02_14650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LTQ02_14650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LTQ02_14655 PF02556 Preprotein translocase subunit SecB LTQ02_14660 PF00581 Rhodanese-like domain LTQ02_14680 PF06082 Exopolysaccharide biosynthesis protein YbjH LTQ02_14685 PF10531 SLBB domain LTQ02_14685 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LTQ02_14685 PF02563 Polysaccharide biosynthesis/export protein LTQ02_14690 PF01451 Low molecular weight phosphotyrosine protein phosphatase LTQ02_14695 PF13614 AAA domain LTQ02_14695 PF13807 G-rich domain on putative tyrosine kinase LTQ02_14695 PF02706 Chain length determinant protein LTQ02_14730 PF00483 Nucleotidyl transferase LTQ02_14735 PF16363 GDP-mannose 4,6 dehydratase LTQ02_14745 PF04321 RmlD substrate binding domain LTQ02_14765 PF00535 Glycosyl transferase family 2 LTQ02_14765 PF01501 Glycosyl transferase family 8 LTQ02_14770 PF00535 Glycosyl transferase family 2 LTQ02_14795 PF01370 NAD dependent epimerase/dehydratase family LTQ02_14800 PF02397 Bacterial sugar transferase LTQ02_14805 PF02719 Polysaccharide biosynthesis protein LTQ02_14810 PF01676 Metalloenzyme superfamily LTQ02_14810 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LTQ02_14820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LTQ02_14820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ02_14825 PF01554 MatE LTQ02_14830 PF00166 Chaperonin 10 Kd subunit LTQ02_14835 PF00118 TCP-1/cpn60 chaperonin family LTQ02_14840 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_14840 PF13426 PAS domain LTQ02_14840 PF08447 PAS fold LTQ02_14840 PF00563 EAL domain LTQ02_14840 PF05231 MASE1 LTQ02_14840 PF08448 PAS fold LTQ02_14850 PF00563 EAL domain LTQ02_14850 PF13426 PAS domain LTQ02_14850 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_14855 PF02308 MgtC family LTQ02_14860 PF04055 Radical SAM superfamily LTQ02_14865 PF01132 Elongation factor P (EF-P) OB domain LTQ02_14865 PF08207 Elongation factor P (EF-P) KOW-like domain LTQ02_14865 PF09285 Elongation factor P, C-terminal LTQ02_14870 PF02313 Fumarate reductase subunit D LTQ02_14875 PF02300 Fumarate reductase subunit C LTQ02_14880 PF13085 2Fe-2S iron-sulfur cluster binding domain LTQ02_14880 PF13183 4Fe-4S dicluster domain LTQ02_14885 PF00890 FAD binding domain LTQ02_14885 PF02910 Fumarate reductase flavoprotein C-term LTQ02_14900 PF00672 HAMP domain LTQ02_14900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_14905 PF03600 Citrate transporter LTQ02_14905 PF02080 TrkA-C domain LTQ02_14910 PF02666 Phosphatidylserine decarboxylase LTQ02_14915 PF03193 RsgA GTPase LTQ02_14920 PF00929 Exonuclease LTQ02_15010 PF08331 Domain of unknown function (DUF1730) LTQ02_15015 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LTQ02_15020 PF01520 N-acetylmuramoyl-L-alanine amidase LTQ02_15035 PF17209 Hfq protein LTQ02_15040 PF01926 50S ribosome-binding GTPase LTQ02_15040 PF13167 GTP-binding GTPase N-terminal LTQ02_15040 PF16360 GTP-binding GTPase Middle Region LTQ02_15045 PF12221 Bacterial membrane protein N terminal LTQ02_15045 PF01145 SPFH domain / Band 7 family LTQ02_15050 PF01145 SPFH domain / Band 7 family LTQ02_15055 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LTQ02_15060 PF00709 Adenylosuccinate synthetase LTQ02_15065 PF08238 Sel1 repeat LTQ02_15070 PF01979 Amidohydrolase family LTQ02_15080 PF08032 RNA 2'-O ribose methyltransferase substrate binding LTQ02_15080 PF00588 SpoU rRNA Methylase family LTQ02_15085 PF01250 Ribosomal protein S6 LTQ02_15090 PF01084 Ribosomal protein S18 LTQ02_15095 PF01281 Ribosomal protein L9, N-terminal domain LTQ02_15095 PF03948 Ribosomal protein L9, C-terminal domain LTQ02_15105 PF03796 DnaB-like helicase C terminal domain LTQ02_15105 PF00772 DnaB-like helicase N terminal domain LTQ02_15110 PF01168 Alanine racemase, N-terminal domain LTQ02_15110 PF00842 Alanine racemase, C-terminal domain LTQ02_15120 PF01894 Uncharacterised protein family UPF0047 LTQ02_15125 PF00342 Phosphoglucose isomerase LTQ02_15135 PF01475 Ferric uptake regulator family LTQ02_15155 PF01207 Dihydrouridine synthase (Dus) LTQ02_15160 PF09583 Phage shock protein G (Phageshock_PspG) LTQ02_15175 PF00175 Oxidoreductase NAD-binding domain LTQ02_15175 PF00258 Flavodoxin LTQ02_15175 PF00667 FAD binding domain LTQ02_15180 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ02_15180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ02_15185 PF01507 Phosphoadenosine phosphosulfate reductase family LTQ02_15260 PF00999 Sodium/hydrogen exchanger family LTQ02_15265 PF00809 Pterin binding enzyme LTQ02_15265 PF02574 Homocysteine S-methyltransferase LTQ02_15265 PF02607 B12 binding domain LTQ02_15265 PF02310 B12 binding domain LTQ02_15265 PF02965 Vitamin B12 dependent methionine synthase, activation domain LTQ02_15275 PF00266 Aminotransferase class-V LTQ02_15285 PF17755 UvrA DNA-binding domain LTQ02_15285 PF00005 ABC transporter LTQ02_15285 PF17760 UvrA interaction domain LTQ02_15290 PF00483 Nucleotidyl transferase LTQ02_15295 PF00196 Bacterial regulatory proteins, luxR family LTQ02_15300 PF00436 Single-strand binding protein family LTQ02_15305 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_15305 PF17157 Gammaproteobacterial periplasmic sensor domain LTQ02_15305 PF00563 EAL domain LTQ02_15325 PF03958 Bacterial type II/III secretion system short domain LTQ02_15325 PF00263 Bacterial type II and III secretion system protein LTQ02_15330 PF13401 AAA domain LTQ02_15330 PF01471 Putative peptidoglycan binding domain LTQ02_15340 PF00437 Type II/IV secretion system protein LTQ02_15340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LTQ02_15345 PF00482 Type II secretion system (T2SS), protein F LTQ02_15355 PF07963 Prokaryotic N-terminal methylation motif LTQ02_15360 PF07963 Prokaryotic N-terminal methylation motif LTQ02_15395 PF04085 rod shape-determining protein MreC LTQ02_15400 PF04093 rod shape-determining protein MreD LTQ02_15405 PF02545 Maf-like protein LTQ02_15410 PF10150 Ribonuclease E/G family LTQ02_15410 PF00575 S1 RNA binding domain LTQ02_15420 PF00795 Carbon-nitrogen hydrolase LTQ02_15425 PF01523 Putative modulator of DNA gyrase LTQ02_15430 PF13006 Insertion element 4 transposase N-terminal LTQ02_15430 PF01609 Transposase DDE domain LTQ02_15435 PF02562 PhoH-like protein LTQ02_15435 PF13638 PIN domain LTQ02_15440 PF00271 Helicase conserved C-terminal domain LTQ02_15440 PF12137 RNA polymerase recycling family C-terminal LTQ02_15440 PF00176 SNF2 family N-terminal domain LTQ02_15440 PF18339 RapA N-terminal Tudor like domain 1 LTQ02_15440 PF18337 RapA N-terminal Tudor like domain LTQ02_15450 PF00849 RNA pseudouridylate synthase LTQ02_15455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ02_15455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ02_15460 PF00582 Universal stress protein family LTQ02_15475 PF02863 Arginine repressor, C-terminal domain LTQ02_15475 PF01316 Arginine repressor, DNA binding domain LTQ02_15480 PF00056 lactate/malate dehydrogenase, NAD binding domain LTQ02_15480 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LTQ02_15490 PF00348 Polyprenyl synthetase LTQ02_15495 PF00829 Ribosomal prokaryotic L21 protein LTQ02_15500 PF01016 Ribosomal L27 protein LTQ02_15505 PF01018 GTP1/OBG LTQ02_15505 PF01926 50S ribosome-binding GTPase LTQ02_15510 PF06738 Putative threonine/serine exporter LTQ02_15515 PF12821 Threonine/Serine exporter, ThrE LTQ02_15520 PF00186 Dihydrofolate reductase LTQ02_15525 PF00149 Calcineurin-like phosphoesterase LTQ02_15530 PF04379 ApaG domain LTQ02_15535 PF00398 Ribosomal RNA adenine dimethylase LTQ02_15545 PF00639 PPIC-type PPIASE domain LTQ02_15545 PF09312 SurA N-terminal domain LTQ02_15550 PF04453 LPS transport system D LTQ02_15550 PF03968 OstA-like protein LTQ02_15555 PF00226 DnaJ domain LTQ02_15555 PF05099 Tellurite resistance protein TerB LTQ02_15570 PF00694 Aconitase C-terminal domain LTQ02_15575 PF00330 Aconitase family (aconitate hydratase) LTQ02_15580 PF00180 Isocitrate/isopropylmalate dehydrogenase LTQ02_15585 PF00682 HMGL-like LTQ02_15585 PF08502 LeuA allosteric (dimerisation) domain LTQ02_15600 PF00873 AcrB/AcrD/AcrF family LTQ02_15605 PF01569 PAP2 superfamily LTQ02_15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_15615 PF03466 LysR substrate binding domain LTQ02_15620 PF00501 AMP-binding enzyme LTQ02_15625 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ02_15625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ02_15625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ02_15630 PF10369 Small subunit of acetolactate synthase LTQ02_15635 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_15635 PF17158 Membrane-associated sensor, integral membrane domain LTQ02_15640 PF07729 FCD domain LTQ02_15640 PF00392 Bacterial regulatory proteins, gntR family LTQ02_15645 PF00224 Pyruvate kinase, barrel domain LTQ02_15645 PF02887 Pyruvate kinase, alpha/beta domain LTQ02_15650 PF00455 DeoR C terminal sensor domain LTQ02_15650 PF08220 DeoR-like helix-turn-helix domain LTQ02_15655 PF01380 SIS domain LTQ02_15660 PF01053 Cys/Met metabolism PLP-dependent enzyme LTQ02_15670 PF03979 Sigma-70 factor, region 1.1 LTQ02_15670 PF04546 Sigma-70, non-essential region LTQ02_15670 PF00140 Sigma-70 factor, region 1.2 LTQ02_15670 PF04542 Sigma-70 region 2 LTQ02_15670 PF04539 Sigma-70 region 3 LTQ02_15670 PF04545 Sigma-70, region 4 LTQ02_15675 PF08275 DNA primase catalytic core, N-terminal domain LTQ02_15675 PF08278 DNA primase DnaG DnaB-binding LTQ02_15675 PF01807 CHC2 zinc finger LTQ02_15675 PF10410 DnaB-helicase binding domain of primase LTQ02_15680 PF09424 Yqey-like protein LTQ02_15685 PF01165 Ribosomal protein S21 LTQ02_15690 PF00814 Glycoprotease family LTQ02_15695 PF12697 Alpha/beta hydrolase family LTQ02_15700 PF02660 Glycerol-3-phosphate acyltransferase LTQ02_15705 PF02152 Dihydroneopterin aldolase LTQ02_15710 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LTQ02_15715 PF02673 Bacitracin resistance protein BacA LTQ02_15720 PF12627 Probable RNA and SrmB- binding site of polymerase A LTQ02_15720 PF01966 HD domain LTQ02_15720 PF01743 Poly A polymerase head domain LTQ02_15725 PF13401 AAA domain LTQ02_15725 PF01471 Putative peptidoglycan binding domain LTQ02_15735 PF08239 Bacterial SH3 domain LTQ02_15740 PF01384 Phosphate transporter family LTQ02_15745 PF01865 Protein of unknown function DUF47 LTQ02_15750 PF01928 CYTH domain LTQ02_15755 PF07885 Ion channel LTQ02_15760 PF02743 Cache domain LTQ02_15760 PF00672 HAMP domain LTQ02_15760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_15765 PF08335 GlnD PII-uridylyltransferase LTQ02_15765 PF03710 Glutamate-ammonia ligase adenylyltransferase LTQ02_15770 PF01467 Cytidylyltransferase-like LTQ02_15770 PF00294 pfkB family carbohydrate kinase LTQ02_15775 PF02321 Outer membrane efflux protein LTQ02_15780 PF00293 NUDIX domain LTQ02_15785 PF06853 Protein of unknown function (DUF1249) LTQ02_15790 PF00149 Calcineurin-like phosphoesterase LTQ02_15795 PF05728 Uncharacterised protein family (UPF0227) LTQ02_15800 PF00204 DNA gyrase B LTQ02_15800 PF00986 DNA gyrase B subunit, carboxyl terminus LTQ02_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_15800 PF01751 Toprim domain LTQ02_15805 PF03989 DNA gyrase C-terminal domain, beta-propeller LTQ02_15805 PF00521 DNA gyrase/topoisomerase IV, subunit A LTQ02_15810 PF13180 PDZ domain LTQ02_15815 PF00595 PDZ domain LTQ02_15820 PF06295 Protein of unknown function (DUF1043) LTQ02_15825 PF03969 AFG1-like ATPase LTQ02_15830 PF00572 Ribosomal protein L13 LTQ02_15835 PF00380 Ribosomal protein S9/S16 LTQ02_15840 PF00355 Rieske [2Fe-2S] domain LTQ02_15840 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LTQ02_15845 PF00032 Cytochrome b(C-terminal)/b6/petD LTQ02_15845 PF00033 Cytochrome b/b6/petB LTQ02_15850 PF02167 Cytochrome C1 family LTQ02_15855 PF02798 Glutathione S-transferase, N-terminal domain LTQ02_15855 PF00043 Glutathione S-transferase, C-terminal domain LTQ02_15860 PF04386 Stringent starvation protein B LTQ02_15865 PF04972 BON domain LTQ02_15870 PF13580 SIS domain LTQ02_15875 PF02021 Uncharacterised protein family UPF0102 LTQ02_15880 PF04348 LppC putative lipoprotein LTQ02_15885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ02_15895 PF01795 MraW methylase family LTQ02_15900 PF04999 Cell division protein FtsL LTQ02_15905 PF03717 Penicillin-binding Protein dimerisation domain LTQ02_15905 PF00905 Penicillin binding protein transpeptidase domain LTQ02_15915 PF08245 Mur ligase middle domain LTQ02_15915 PF02875 Mur ligase family, glutamate ligase domain LTQ02_15915 PF01225 Mur ligase family, catalytic domain LTQ02_15920 PF00953 Glycosyl transferase family 4 LTQ02_15920 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LTQ02_15925 PF08245 Mur ligase middle domain LTQ02_15925 PF02875 Mur ligase family, glutamate ligase domain LTQ02_15930 PF01098 Cell cycle protein LTQ02_15935 PF03033 Glycosyltransferase family 28 N-terminal domain LTQ02_15935 PF04101 Glycosyltransferase family 28 C-terminal domain LTQ02_15940 PF01225 Mur ligase family, catalytic domain LTQ02_15940 PF08245 Mur ligase middle domain LTQ02_15940 PF02875 Mur ligase family, glutamate ligase domain LTQ02_15945 PF08478 POTRA domain, FtsQ-type LTQ02_15945 PF03799 Cell division protein FtsQ LTQ02_15950 PF02491 SHS2 domain inserted in FTSA LTQ02_15955 PF00091 Tubulin/FtsZ family, GTPase domain LTQ02_15955 PF12327 FtsZ family, C-terminal domain LTQ02_15960 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LTQ02_15965 PF07516 SecA Wing and Scaffold domain LTQ02_15965 PF02810 SEC-C motif LTQ02_15965 PF01043 SecA preprotein cross-linking domain LTQ02_15965 PF07517 SecA DEAD-like domain LTQ02_15970 PF00293 NUDIX domain LTQ02_15975 PF05173 Dihydrodipicolinate reductase, C-terminus LTQ02_15975 PF01113 Dihydrodipicolinate reductase, N-terminus LTQ02_15980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LTQ02_15980 PF00117 Glutamine amidotransferase class-I LTQ02_15985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LTQ02_15985 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LTQ02_15985 PF02142 MGS-like domain LTQ02_15990 PF01925 Sulfite exporter TauE/SafE LTQ02_15995 PF03466 LysR substrate binding domain LTQ02_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16005 PF03458 UPF0126 domain LTQ02_16010 PF01497 Periplasmic binding protein LTQ02_16020 PF01048 Phosphorylase superfamily LTQ02_16030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_16030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LTQ02_16035 PF01493 GXGXG motif LTQ02_16035 PF01645 Conserved region in glutamate synthase LTQ02_16035 PF04898 Glutamate synthase central domain LTQ02_16035 PF00310 Glutamine amidotransferases class-II LTQ02_16040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LTQ02_16040 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_16045 PF01645 Conserved region in glutamate synthase LTQ02_16045 PF01493 GXGXG motif LTQ02_16045 PF00310 Glutamine amidotransferases class-II LTQ02_16045 PF04898 Glutamate synthase central domain LTQ02_16050 PF04055 Radical SAM superfamily LTQ02_16050 PF16199 Radical_SAM C-terminal domain LTQ02_16055 PF01590 GAF domain LTQ02_16055 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_16055 PF00360 Phytochrome region LTQ02_16055 PF00563 EAL domain LTQ02_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_16060 PF18415 Histidine kinase receptor ArcB trans-membrane domain LTQ02_16060 PF01627 Hpt domain LTQ02_16060 PF00989 PAS fold LTQ02_16060 PF00072 Response regulator receiver domain LTQ02_16060 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_16070 PF00072 Response regulator receiver domain LTQ02_16070 PF00486 Transcriptional regulatory protein, C terminal LTQ02_16075 PF03737 Aldolase/RraA LTQ02_16085 PF01842 ACT domain LTQ02_16085 PF00696 Amino acid kinase family LTQ02_16085 PF03447 Homoserine dehydrogenase, NAD binding domain LTQ02_16085 PF00742 Homoserine dehydrogenase LTQ02_16085 PF13840 ACT domain LTQ02_16090 PF00288 GHMP kinases N terminal domain LTQ02_16090 PF08544 GHMP kinases C terminal LTQ02_16095 PF14821 Threonine synthase N terminus LTQ02_16095 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_16100 PF01228 Glycine radical LTQ02_16105 PF01261 Xylose isomerase-like TIM barrel LTQ02_16110 PF03167 Uracil DNA glycosylase superfamily LTQ02_16125 PF01235 Sodium:alanine symporter family LTQ02_16130 PF03883 Peroxide stress protein YaaA LTQ02_16135 PF00271 Helicase conserved C-terminal domain LTQ02_16135 PF00270 DEAD/DEAH box helicase LTQ02_16140 PF05175 Methyltransferase small domain LTQ02_16145 PF05525 Branched-chain amino acid transport protein LTQ02_16150 PF00258 Flavodoxin LTQ02_16155 PF00589 Phage integrase family LTQ02_16155 PF02899 Phage integrase, N-terminal SAM-like domain LTQ02_16160 PF13098 Thioredoxin-like domain LTQ02_16160 PF10411 Disulfide bond isomerase protein N-terminus LTQ02_16165 PF17768 RecJ OB domain LTQ02_16165 PF01368 DHH family LTQ02_16165 PF02272 DHHA1 domain LTQ02_16175 PF01336 OB-fold nucleic acid binding domain LTQ02_16175 PF00152 tRNA synthetases class II (D, K and N) LTQ02_16180 PF02954 Bacterial regulatory protein, Fis family LTQ02_16180 PF00158 Sigma-54 interaction domain LTQ02_16180 PF06505 Activator of aromatic catabolism LTQ02_16180 PF02830 V4R domain LTQ02_16195 PF02976 DNA mismatch repair enzyme MutH LTQ02_16200 PF00293 NUDIX domain LTQ02_16210 PF01925 Sulfite exporter TauE/SafE LTQ02_16215 PF01790 Prolipoprotein diacylglyceryl transferase LTQ02_16220 PF00303 Thymidylate synthase LTQ02_16225 PF00486 Transcriptional regulatory protein, C terminal LTQ02_16225 PF00072 Response regulator receiver domain LTQ02_16235 PF02690 Na+/Pi-cotransporter LTQ02_16240 PF03466 LysR substrate binding domain LTQ02_16240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16245 PF01022 Bacterial regulatory protein, arsR family LTQ02_16250 PF01649 Ribosomal protein S20 LTQ02_16255 PF03023 Lipid II flippase MurJ LTQ02_16260 PF06574 FAD synthetase LTQ02_16260 PF01687 Riboflavin kinase LTQ02_16265 PF08264 Anticodon-binding domain of tRNA LTQ02_16265 PF00133 tRNA synthetases class I (I, L, M and V) LTQ02_16265 PF06827 Zinc finger found in FPG and IleRS LTQ02_16270 PF01252 Signal peptidase (SPase) II LTQ02_16275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_16280 PF02401 LytB protein LTQ02_16285 PF00072 Response regulator receiver domain LTQ02_16285 PF04397 LytTr DNA-binding domain LTQ02_16290 PF07694 5TMR of 5TMR-LYT LTQ02_16290 PF06580 Histidine kinase LTQ02_16295 PF02554 Carbon starvation protein CstA LTQ02_16305 PF13580 SIS domain LTQ02_16315 PF00933 Glycosyl hydrolase family 3 N terminal domain LTQ02_16325 PF01817 Chorismate mutase type II LTQ02_16325 PF02153 Prephenate dehydrogenase LTQ02_16330 PF01551 Peptidase family M23 LTQ02_16330 PF04225 Opacity-associated protein A LysM-like domain LTQ02_16335 PF07238 PilZ domain LTQ02_16340 PF12848 ABC transporter LTQ02_16340 PF00005 ABC transporter LTQ02_16345 PF01464 Transglycosylase SLT domain LTQ02_16345 PF14718 Soluble lytic murein transglycosylase L domain LTQ02_16350 PF01371 Trp repressor protein LTQ02_16355 PF01931 Protein of unknown function DUF84 LTQ02_16360 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_16360 PF00563 EAL domain LTQ02_16365 PF00800 Prephenate dehydratase LTQ02_16365 PF01817 Chorismate mutase type II LTQ02_16370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LTQ02_16375 PF01464 Transglycosylase SLT domain LTQ02_16380 PF13525 Outer membrane lipoprotein LTQ02_16385 PF00849 RNA pseudouridylate synthase LTQ02_16385 PF01479 S4 domain LTQ02_16390 PF02578 Multi-copper polyphenol oxidoreductase laccase LTQ02_16395 PF17871 AAA lid domain LTQ02_16395 PF02861 Clp amino terminal domain, pathogenicity island component LTQ02_16395 PF10431 C-terminal, D2-small domain, of ClpB protein LTQ02_16395 PF07724 AAA domain (Cdc48 subfamily) LTQ02_16395 PF00004 ATPase family associated with various cellular activities (AAA) LTQ02_16425 PF01548 Transposase LTQ02_16425 PF02371 Transposase IS116/IS110/IS902 family LTQ02_16440 PF18267 Rubredoxin NAD+ reductase C-terminal domain LTQ02_16440 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_16440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ02_16440 PF04324 BFD-like [2Fe-2S] binding domain LTQ02_16440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ02_16450 PF07690 Major Facilitator Superfamily LTQ02_16455 PF00069 Protein kinase domain LTQ02_16455 PF03793 PASTA domain LTQ02_16465 PF00381 PTS HPr component phosphorylation site LTQ02_16465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_16470 PF00294 pfkB family carbohydrate kinase LTQ02_16475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_16475 PF02378 Phosphotransferase system, EIIC LTQ02_16505 PF04116 Fatty acid hydroxylase superfamily LTQ02_16510 PF00486 Transcriptional regulatory protein, C terminal LTQ02_16510 PF00072 Response regulator receiver domain LTQ02_16530 PF02798 Glutathione S-transferase, N-terminal domain LTQ02_16535 PF01844 HNH endonuclease LTQ02_16545 PF07690 Major Facilitator Superfamily LTQ02_16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_16580 PF00072 Response regulator receiver domain LTQ02_16580 PF01627 Hpt domain LTQ02_16580 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_16580 PF00672 HAMP domain LTQ02_16580 PF17149 Periplasmic sensor domain found in signal transduction proteins LTQ02_16590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LTQ02_16595 PF02142 MGS-like domain LTQ02_16605 PF12462 DNA helicase IV / RNA helicase N terminal LTQ02_16605 PF00580 UvrD/REP helicase N-terminal domain LTQ02_16605 PF13361 UvrD-like helicase C-terminal domain LTQ02_16610 PF12805 FUSC-like inner membrane protein yccS LTQ02_16630 PF03466 LysR substrate binding domain LTQ02_16630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16635 PF04055 Radical SAM superfamily LTQ02_16640 PF11230 Protein of unknown function (DUF3029) LTQ02_16650 PF03466 LysR substrate binding domain LTQ02_16650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16665 PF00892 EamA-like transporter family LTQ02_16670 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_16680 PF00465 Iron-containing alcohol dehydrogenase LTQ02_16700 PF02525 Flavodoxin-like fold LTQ02_16705 PF00999 Sodium/hydrogen exchanger family LTQ02_16705 PF02254 TrkA-N domain LTQ02_16725 PF13005 zinc-finger binding domain of transposase IS66 LTQ02_16725 PF03050 Transposase IS66 family LTQ02_16725 PF13817 IS66 C-terminal element LTQ02_16725 PF13007 Transposase C of IS166 homeodomain LTQ02_16750 PF03793 PASTA domain LTQ02_16750 PF00069 Protein kinase domain LTQ02_16760 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LTQ02_16795 PF00107 Zinc-binding dehydrogenase LTQ02_16795 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_16800 PF00155 Aminotransferase class I and II LTQ02_16805 PF00563 EAL domain LTQ02_16805 PF17153 Periplasmic sensor domain, extracellular LTQ02_16820 PF03466 LysR substrate binding domain LTQ02_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_16850 PF01966 HD domain LTQ02_16860 PF03466 LysR substrate binding domain LTQ02_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_16865 PF01906 Putative heavy-metal-binding LTQ02_16870 PF01551 Peptidase family M23 LTQ02_16870 PF01476 LysM domain LTQ02_16870 PF08525 Opacity-associated protein A N-terminal motif LTQ02_16900 PF00005 ABC transporter LTQ02_16900 PF00664 ABC transporter transmembrane region LTQ02_16905 PF00133 tRNA synthetases class I (I, L, M and V) LTQ02_16905 PF08264 Anticodon-binding domain of tRNA LTQ02_16925 PF03313 Serine dehydratase alpha chain LTQ02_16925 PF03315 Serine dehydratase beta chain LTQ02_16930 PF00854 POT family LTQ02_16935 PF04954 Siderophore-interacting protein LTQ02_16935 PF08021 Siderophore-interacting FAD-binding domain LTQ02_16940 PF00356 Bacterial regulatory proteins, lacI family LTQ02_16940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LTQ02_16945 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LTQ02_16945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ02_16950 PF01202 Shikimate kinase LTQ02_16955 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_16965 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_16975 PF07702 UTRA domain LTQ02_16975 PF00392 Bacterial regulatory proteins, gntR family LTQ02_16980 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_16985 PF00005 ABC transporter LTQ02_16990 PF01266 FAD dependent oxidoreductase LTQ02_17000 PF00266 Aminotransferase class-V LTQ02_17005 PF00202 Aminotransferase class-III LTQ02_17010 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_17015 PF00691 OmpA family LTQ02_17015 PF13488 Glycine zipper LTQ02_17020 PF02566 OsmC-like protein LTQ02_17025 PF01625 Peptide methionine sulfoxide reductase LTQ02_17025 PF01641 SelR domain LTQ02_17030 PF02386 Cation transport protein LTQ02_17035 PF02080 TrkA-C domain LTQ02_17035 PF02254 TrkA-N domain LTQ02_17040 PF00924 Mechanosensitive ion channel LTQ02_17045 PF01050 Mannose-6-phosphate isomerase LTQ02_17045 PF00483 Nucleotidyl transferase LTQ02_17050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ02_17050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ02_17050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ02_17050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ02_17055 PF00793 DAHP synthetase I family LTQ02_17060 PF12843 Putative quorum-sensing-regulated virulence factor LTQ02_17070 PF18416 N-acetylglucosamine binding protein domain 2 LTQ02_17070 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LTQ02_17075 PF01040 UbiA prenyltransferase family LTQ02_17080 PF02628 Cytochrome oxidase assembly protein LTQ02_17100 PF00510 Cytochrome c oxidase subunit III LTQ02_17105 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LTQ02_17110 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ02_17115 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LTQ02_17115 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LTQ02_17120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LTQ02_17120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LTQ02_17120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LTQ02_17120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LTQ02_17125 PF01810 LysE type translocator LTQ02_17130 PF01557 Fumarylacetoacetate (FAA) hydrolase family LTQ02_17140 PF00012 Hsp70 protein LTQ02_17160 PF00072 Response regulator receiver domain LTQ02_17160 PF09308 LuxQ, periplasmic LTQ02_17160 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_17165 PF13407 Periplasmic binding protein domain LTQ02_17170 PF01541 GIY-YIG catalytic domain LTQ02_17175 PF04337 Protein of unknown function, DUF480 LTQ02_17185 PF04363 Protein of unknown function (DUF496) LTQ02_17200 PF00672 HAMP domain LTQ02_17200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_17200 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_17200 PF01627 Hpt domain LTQ02_17200 PF00072 Response regulator receiver domain LTQ02_17200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ02_17205 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LTQ02_17205 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LTQ02_17210 PF00970 Oxidoreductase FAD-binding domain LTQ02_17210 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_17210 PF00175 Oxidoreductase NAD-binding domain LTQ02_17215 PF03063 Prismane/CO dehydrogenase family LTQ02_17230 PF01810 LysE type translocator LTQ02_17235 PF03466 LysR substrate binding domain LTQ02_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_17245 PF13520 Amino acid permease LTQ02_17250 PF00155 Aminotransferase class I and II LTQ02_17250 PF00392 Bacterial regulatory proteins, gntR family LTQ02_17265 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ02_17265 PF12833 Helix-turn-helix domain LTQ02_17280 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LTQ02_17285 PF07969 Amidohydrolase family LTQ02_17290 PF00313 'Cold-shock' DNA-binding domain LTQ02_17295 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17315 PF00563 EAL domain LTQ02_17315 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17315 PF03707 Bacterial signalling protein N terminal repeat LTQ02_17340 PF00873 AcrB/AcrD/AcrF family LTQ02_17350 PF02321 Outer membrane efflux protein LTQ02_17360 PF01773 Na+ dependent nucleoside transporter N-terminus LTQ02_17360 PF07662 Na+ dependent nucleoside transporter C-terminus LTQ02_17360 PF07670 Nucleoside recognition LTQ02_17370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_17375 PF03611 PTS system sugar-specific permease component LTQ02_17380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_17385 PF01966 HD domain LTQ02_17395 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_17395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_17395 PF00672 HAMP domain LTQ02_17395 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ02_17400 PF00072 Response regulator receiver domain LTQ02_17400 PF00486 Transcriptional regulatory protein, C terminal LTQ02_17405 PF00563 EAL domain LTQ02_17405 PF13426 PAS domain LTQ02_17405 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17415 PF08447 PAS fold LTQ02_17415 PF08448 PAS fold LTQ02_17415 PF00563 EAL domain LTQ02_17415 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17425 PF00005 ABC transporter LTQ02_17445 PF01872 RibD C-terminal domain LTQ02_17445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ02_17465 PF07690 Major Facilitator Superfamily LTQ02_17480 PF02311 AraC-like ligand binding domain LTQ02_17480 PF12833 Helix-turn-helix domain LTQ02_17495 PF01274 Malate synthase LTQ02_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_17500 PF03466 LysR substrate binding domain LTQ02_17505 PF00463 Isocitrate lyase family LTQ02_17520 PF01752 Collagenase LTQ02_17520 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_17520 PF08453 Peptidase family M9 N-terminal LTQ02_17535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_17535 PF03466 LysR substrate binding domain LTQ02_17575 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17575 PF00072 Response regulator receiver domain LTQ02_17590 PF01032 FecCD transport family LTQ02_17600 PF00005 ABC transporter LTQ02_17605 PF00149 Calcineurin-like phosphoesterase LTQ02_17605 PF02872 5'-nucleotidase, C-terminal domain LTQ02_17615 PF00005 ABC transporter LTQ02_17630 PF04231 Endonuclease I LTQ02_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_17640 PF03466 LysR substrate binding domain LTQ02_17660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_17675 PF12793 Sugar transport-related sRNA regulator N-term LTQ02_17675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_17685 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_17690 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_17690 PF14785 Maltose transport system permease protein MalF P2 domain LTQ02_17695 PF01547 Bacterial extracellular solute-binding protein LTQ02_17700 PF08402 TOBE domain LTQ02_17700 PF00005 ABC transporter LTQ02_17710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_17710 PF00672 HAMP domain LTQ02_17710 PF02743 Cache domain LTQ02_17720 PF17863 AAA lid domain LTQ02_17720 PF07726 ATPase family associated with various cellular activities (AAA) LTQ02_17725 PF01882 Protein of unknown function DUF58 LTQ02_17735 PF07584 Aerotolerance regulator N-terminal LTQ02_17735 PF00092 von Willebrand factor type A domain LTQ02_17750 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17750 PF17151 Periplasmic sensor domain LTQ02_17755 PF00005 ABC transporter LTQ02_17760 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_17765 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_17770 PF12849 PBP superfamily domain LTQ02_17775 PF17200 Single Cache domain 2 LTQ02_17775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_17775 PF00672 HAMP domain LTQ02_17790 PF01483 Proprotein convertase P-domain LTQ02_17790 PF00082 Subtilase family LTQ02_17800 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LTQ02_17800 PF00326 Prolyl oligopeptidase family LTQ02_17805 PF03280 Proteobacterial lipase chaperone protein LTQ02_17810 PF00561 alpha/beta hydrolase fold LTQ02_17815 PF00657 GDSL-like Lipase/Acylhydrolase LTQ02_17820 PF00271 Helicase conserved C-terminal domain LTQ02_17820 PF00270 DEAD/DEAH box helicase LTQ02_17830 PF17969 L,D-transpeptidase C-terminal domain LTQ02_17830 PF01476 LysM domain LTQ02_17830 PF03734 L,D-transpeptidase catalytic domain LTQ02_17835 PF01048 Phosphorylase superfamily LTQ02_17850 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_17860 PF11742 Protein of unknown function (DUF3302) LTQ02_17865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_17865 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_17870 PF07155 ECF-type riboflavin transporter, S component LTQ02_17875 PF12558 ATP-binding cassette cobalt transporter LTQ02_17875 PF00005 ABC transporter LTQ02_17890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ02_17890 PF02806 Alpha amylase, C-terminal all-beta domain LTQ02_17890 PF00128 Alpha amylase, catalytic domain LTQ02_17895 PF02446 4-alpha-glucanotransferase LTQ02_17900 PF00343 Carbohydrate phosphorylase LTQ02_17905 PF00196 Bacterial regulatory proteins, luxR family LTQ02_17905 PF17874 MalT-like TPR region LTQ02_17920 PF02630 SCO1/SenC LTQ02_17930 PF03193 RsgA GTPase LTQ02_17935 PF00375 Sodium:dicarboxylate symporter family LTQ02_17945 PF00196 Bacterial regulatory proteins, luxR family LTQ02_17945 PF00072 Response regulator receiver domain LTQ02_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_17950 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_17955 PF13247 4Fe-4S dicluster domain LTQ02_17960 PF03916 Polysulphide reductase, NrfD LTQ02_17965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ02_17965 PF00384 Molybdopterin oxidoreductase LTQ02_17965 PF01568 Molydopterin dinucleotide binding domain LTQ02_17975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LTQ02_17980 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_17985 PF13378 Enolase C-terminal domain-like LTQ02_17985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LTQ02_17990 PF00890 FAD binding domain LTQ02_17990 PF04205 FMN-binding domain LTQ02_17995 PF07729 FCD domain LTQ02_17995 PF00392 Bacterial regulatory proteins, gntR family LTQ02_18000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18000 PF03466 LysR substrate binding domain LTQ02_18005 PF01037 Lrp/AsnC ligand binding domain LTQ02_18010 PF01810 LysE type translocator LTQ02_18020 PF00128 Alpha amylase, catalytic domain LTQ02_18020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ02_18020 PF17999 Pullulanase N1-terminal domain LTQ02_18025 PF17967 Pullulanase N2 domain LTQ02_18025 PF18494 Pullulanase Ins domain LTQ02_18025 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ02_18025 PF11852 Domain of unknown function (DUF3372) LTQ02_18025 PF03714 Bacterial pullanase-associated domain LTQ02_18035 PF02264 LamB porin LTQ02_18040 PF00128 Alpha amylase, catalytic domain LTQ02_18040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LTQ02_18055 PF01553 Acyltransferase LTQ02_18060 PF00970 Oxidoreductase FAD-binding domain LTQ02_18060 PF00175 Oxidoreductase NAD-binding domain LTQ02_18070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LTQ02_18070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LTQ02_18075 PF01734 Patatin-like phospholipase LTQ02_18080 PF06628 Catalase-related immune-responsive LTQ02_18080 PF00199 Catalase LTQ02_18085 PF02595 Glycerate kinase family LTQ02_18095 PF01261 Xylose isomerase-like TIM barrel LTQ02_18100 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LTQ02_18110 PF00596 Class II Aldolase and Adducin N-terminal domain LTQ02_18115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_18120 PF03611 PTS system sugar-specific permease component LTQ02_18125 PF00455 DeoR C terminal sensor domain LTQ02_18125 PF08220 DeoR-like helix-turn-helix domain LTQ02_18150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ02_18150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LTQ02_18160 PF03466 LysR substrate binding domain LTQ02_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18185 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LTQ02_18185 PF00535 Glycosyl transferase family 2 LTQ02_18190 PF01852 START domain LTQ02_18195 PF00440 Bacterial regulatory proteins, tetR family LTQ02_18210 PF01758 Sodium Bile acid symporter family LTQ02_18215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18215 PF03466 LysR substrate binding domain LTQ02_18225 PF16671 Actin cross-linking domain LTQ02_18225 PF12146 Serine aminopeptidase, S33 LTQ02_18225 PF11647 Membrane Localization Domain LTQ02_18225 PF11713 Peptidase C80 family LTQ02_18225 PF07634 RtxA repeat LTQ02_18230 PF02794 RTX toxin acyltransferase family LTQ02_18240 PF03412 Peptidase C39 family LTQ02_18240 PF00005 ABC transporter LTQ02_18240 PF00664 ABC transporter transmembrane region LTQ02_18250 PF00664 ABC transporter transmembrane region LTQ02_18250 PF03412 Peptidase C39 family LTQ02_18250 PF00005 ABC transporter LTQ02_18255 PF00230 Major intrinsic protein LTQ02_18260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LTQ02_18260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LTQ02_18265 PF00455 DeoR C terminal sensor domain LTQ02_18265 PF08220 DeoR-like helix-turn-helix domain LTQ02_18270 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LTQ02_18270 PF01266 FAD dependent oxidoreductase LTQ02_18275 PF00106 short chain dehydrogenase LTQ02_18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18280 PF03466 LysR substrate binding domain LTQ02_18290 PF01177 Asp/Glu/Hydantoin racemase LTQ02_18300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_18300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ02_18305 PF00881 Nitroreductase family LTQ02_18310 PF13091 PLD-like domain LTQ02_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18325 PF03466 LysR substrate binding domain LTQ02_18330 PF07690 Major Facilitator Superfamily LTQ02_18335 PF12464 Maltose acetyltransferase LTQ02_18335 PF14602 Hexapeptide repeat of succinyl-transferase LTQ02_18340 PF00356 Bacterial regulatory proteins, lacI family LTQ02_18345 PF00232 Glycosyl hydrolase family 1 LTQ02_18350 PF00149 Calcineurin-like phosphoesterase LTQ02_18350 PF02872 5'-nucleotidase, C-terminal domain LTQ02_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18375 PF03466 LysR substrate binding domain LTQ02_18380 PF14864 Alkyl sulfatase C-terminal LTQ02_18380 PF00753 Metallo-beta-lactamase superfamily LTQ02_18380 PF14863 Alkyl sulfatase dimerisation LTQ02_18385 PF03466 LysR substrate binding domain LTQ02_18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18390 PF01554 MatE LTQ02_18395 PF00378 Enoyl-CoA hydratase/isomerase LTQ02_18400 PF00106 short chain dehydrogenase LTQ02_18465 PF00809 Pterin binding enzyme LTQ02_18465 PF02965 Vitamin B12 dependent methionine synthase, activation domain LTQ02_18465 PF02310 B12 binding domain LTQ02_18465 PF02574 Homocysteine S-methyltransferase LTQ02_18465 PF02607 B12 binding domain LTQ02_18490 PF14765 Polyketide synthase dehydratase LTQ02_18490 PF16197 Ketoacyl-synthetase C-terminal extension LTQ02_18490 PF00698 Acyl transferase domain LTQ02_18490 PF00109 Beta-ketoacyl synthase, N-terminal domain LTQ02_18490 PF02801 Beta-ketoacyl synthase, C-terminal domain LTQ02_18490 PF08659 KR domain LTQ02_18490 PF00550 Phosphopantetheine attachment site LTQ02_18490 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_18505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_18505 PF03466 LysR substrate binding domain LTQ02_18510 PF00962 Adenosine/AMP deaminase LTQ02_18515 PF12464 Maltose acetyltransferase LTQ02_18515 PF14602 Hexapeptide repeat of succinyl-transferase LTQ02_18520 PF17853 GGDEF-like domain LTQ02_18520 PF12833 Helix-turn-helix domain LTQ02_18530 PF00392 Bacterial regulatory proteins, gntR family LTQ02_18530 PF07702 UTRA domain LTQ02_18535 PF13378 Enolase C-terminal domain-like LTQ02_18535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LTQ02_18540 PF02378 Phosphotransferase system, EIIC LTQ02_18540 PF00367 phosphotransferase system, EIIB LTQ02_18545 PF00294 pfkB family carbohydrate kinase LTQ02_18550 PF01081 KDPG and KHG aldolase LTQ02_18555 PF07687 Peptidase dimerisation domain LTQ02_18555 PF01546 Peptidase family M20/M25/M40 LTQ02_18565 PF01321 Creatinase/Prolidase N-terminal domain LTQ02_18565 PF00557 Metallopeptidase family M24 LTQ02_18570 PF13309 HTH domain LTQ02_18570 PF08348 YheO-like PAS domain LTQ02_18575 PF01042 Endoribonuclease L-PSP LTQ02_18580 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_18585 PF02600 Disulfide bond formation protein DsbB LTQ02_18600 PF01594 AI-2E family transporter LTQ02_18635 PF02142 MGS-like domain LTQ02_18635 PF00781 Diacylglycerol kinase catalytic domain LTQ02_18660 PF02954 Bacterial regulatory protein, Fis family LTQ02_18660 PF00158 Sigma-54 interaction domain LTQ02_18660 PF01590 GAF domain LTQ02_18665 PF13840 ACT domain LTQ02_18665 PF00696 Amino acid kinase family LTQ02_18670 PF06339 Ectoine synthase LTQ02_18675 PF00202 Aminotransferase class-III LTQ02_18680 PF00583 Acetyltransferase (GNAT) family LTQ02_18700 PF00440 Bacterial regulatory proteins, tetR family LTQ02_18700 PF16925 Tetracyclin repressor-like, C-terminal domain LTQ02_18705 PF13186 Iron-sulfur cluster-binding domain LTQ02_18705 PF04055 Radical SAM superfamily LTQ02_18710 PF00884 Sulfatase LTQ02_18720 PF00465 Iron-containing alcohol dehydrogenase LTQ02_18730 PF00171 Aldehyde dehydrogenase family LTQ02_18735 PF01047 MarR family LTQ02_18740 PF00005 ABC transporter LTQ02_18740 PF00571 CBS domain LTQ02_18745 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_18750 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LTQ02_18755 PF05199 GMC oxidoreductase LTQ02_18755 PF00732 GMC oxidoreductase LTQ02_18760 PF00171 Aldehyde dehydrogenase family LTQ02_18765 PF00440 Bacterial regulatory proteins, tetR family LTQ02_18765 PF13977 BetI-type transcriptional repressor, C-terminal LTQ02_18770 PF01321 Creatinase/Prolidase N-terminal domain LTQ02_18770 PF00557 Metallopeptidase family M24 LTQ02_18775 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_18785 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_18790 PF01546 Peptidase family M20/M25/M40 LTQ02_18790 PF07687 Peptidase dimerisation domain LTQ02_18800 PF01037 Lrp/AsnC ligand binding domain LTQ02_18805 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_18815 PF00072 Response regulator receiver domain LTQ02_18815 PF00486 Transcriptional regulatory protein, C terminal LTQ02_18820 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_18820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_18820 PF00672 HAMP domain LTQ02_18835 PF04389 Peptidase family M28 LTQ02_18835 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_18840 PF01266 FAD dependent oxidoreductase LTQ02_18855 PF02954 Bacterial regulatory protein, Fis family LTQ02_18855 PF00072 Response regulator receiver domain LTQ02_18855 PF00158 Sigma-54 interaction domain LTQ02_18870 PF01081 KDPG and KHG aldolase LTQ02_18875 PF00294 pfkB family carbohydrate kinase LTQ02_18890 PF07969 Amidohydrolase family LTQ02_18920 PF08019 Phosphoethanolamine transferase EptA/EptB LTQ02_18920 PF00884 Sulfatase LTQ02_18925 PF01544 CorA-like Mg2+ transporter protein LTQ02_18955 PF00664 ABC transporter transmembrane region LTQ02_18955 PF00005 ABC transporter LTQ02_18960 PF04286 Protein of unknown function (DUF445) LTQ02_18965 PF01037 Lrp/AsnC ligand binding domain LTQ02_18990 PF00474 Sodium:solute symporter family LTQ02_19000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LTQ02_19000 PF00171 Aldehyde dehydrogenase family LTQ02_19000 PF14850 DNA-binding domain of Proline dehydrogenase LTQ02_19000 PF01619 Proline dehydrogenase LTQ02_19005 PF12833 Helix-turn-helix domain LTQ02_19020 PF00196 Bacterial regulatory proteins, luxR family LTQ02_19020 PF00072 Response regulator receiver domain LTQ02_19025 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LTQ02_19025 PF01243 Pyridoxamine 5'-phosphate oxidase LTQ02_19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_19030 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_19030 PF02743 Cache domain LTQ02_19035 PF00072 Response regulator receiver domain LTQ02_19035 PF00158 Sigma-54 interaction domain LTQ02_19035 PF02954 Bacterial regulatory protein, Fis family LTQ02_19040 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_19055 PF00005 ABC transporter LTQ02_19055 PF03412 Peptidase C39 family LTQ02_19055 PF00664 ABC transporter transmembrane region LTQ02_19070 PF08775 ParB family LTQ02_19070 PF02195 ParB-like nuclease domain LTQ02_19075 PF18607 ParA helix turn helix domain LTQ02_19075 PF13614 AAA domain LTQ02_19090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_19090 PF00005 ABC transporter LTQ02_19095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_19095 PF00005 ABC transporter LTQ02_19105 PF00925 GTP cyclohydrolase II LTQ02_19105 PF08719 Domain of unknown function (DUF1768) LTQ02_19115 PF00072 Response regulator receiver domain LTQ02_19115 PF01627 Hpt domain LTQ02_19115 PF17149 Periplasmic sensor domain found in signal transduction proteins LTQ02_19115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_19115 PF00672 HAMP domain LTQ02_19115 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_19120 PF07702 UTRA domain LTQ02_19120 PF00392 Bacterial regulatory proteins, gntR family LTQ02_19145 PF00005 ABC transporter LTQ02_19145 PF08402 TOBE domain LTQ02_19155 PF00486 Transcriptional regulatory protein, C terminal LTQ02_19155 PF00072 Response regulator receiver domain LTQ02_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_19160 PF00672 HAMP domain LTQ02_19160 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_19175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_19180 PF04209 homogentisate 1,2-dioxygenase LTQ02_19195 PF00696 Amino acid kinase family LTQ02_19205 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LTQ02_19210 PF01329 Pterin 4 alpha carbinolamine dehydratase LTQ02_19220 PF01709 Transcriptional regulator LTQ02_19235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ02_19235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ02_19240 PF07687 Peptidase dimerisation domain LTQ02_19240 PF01546 Peptidase family M20/M25/M40 LTQ02_19250 PF00144 Beta-lactamase LTQ02_19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19260 PF03466 LysR substrate binding domain LTQ02_19300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_19300 PF00672 HAMP domain LTQ02_19300 PF02743 Cache domain LTQ02_19315 PF00005 ABC transporter LTQ02_19345 PF05193 Peptidase M16 inactive domain LTQ02_19345 PF00675 Insulinase (Peptidase family M16) LTQ02_19355 PF07549 SecD/SecF GG Motif LTQ02_19355 PF13721 SecD export protein N-terminal TM region LTQ02_19355 PF02355 Protein export membrane protein LTQ02_19360 PF02355 Protein export membrane protein LTQ02_19360 PF07549 SecD/SecF GG Motif LTQ02_19375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ02_19380 PF07690 Major Facilitator Superfamily LTQ02_19390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19390 PF03466 LysR substrate binding domain LTQ02_19395 PF14863 Alkyl sulfatase dimerisation LTQ02_19395 PF14864 Alkyl sulfatase C-terminal LTQ02_19395 PF00753 Metallo-beta-lactamase superfamily LTQ02_19400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19400 PF03466 LysR substrate binding domain LTQ02_19420 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LTQ02_19425 PF00106 short chain dehydrogenase LTQ02_19460 PF01593 Flavin containing amine oxidoreductase LTQ02_19465 PF00106 short chain dehydrogenase LTQ02_19475 PF00875 DNA photolyase LTQ02_19475 PF03441 FAD binding domain of DNA photolyase LTQ02_19485 PF12973 ChrR Cupin-like domain LTQ02_19490 PF04542 Sigma-70 region 2 LTQ02_19490 PF04545 Sigma-70, region 4 LTQ02_19500 PF14552 Tautomerase enzyme LTQ02_19510 PF10928 Protein of unknown function (DUF2810) LTQ02_19515 PF03616 Sodium/glutamate symporter LTQ02_19520 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_19520 PF18113 Rubredoxin binding C-terminal domain LTQ02_19525 PF00258 Flavodoxin LTQ02_19525 PF00753 Metallo-beta-lactamase superfamily LTQ02_19525 PF00301 Rubredoxin LTQ02_19530 PF00881 Nitroreductase family LTQ02_19540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_19540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_19540 PF02378 Phosphotransferase system, EIIC LTQ02_19545 PF08125 Mannitol dehydrogenase C-terminal domain LTQ02_19545 PF01232 Mannitol dehydrogenase Rossmann domain LTQ02_19550 PF05068 Mannitol repressor LTQ02_19555 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LTQ02_19565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19565 PF03466 LysR substrate binding domain LTQ02_19575 PF06029 AlkA N-terminal domain LTQ02_19575 PF00730 HhH-GPD superfamily base excision DNA repair protein LTQ02_19580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LTQ02_19580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LTQ02_19590 PF03600 Citrate transporter LTQ02_19600 PF07670 Nucleoside recognition LTQ02_19605 PF07670 Nucleoside recognition LTQ02_19610 PF01124 MAPEG family LTQ02_19630 PF12833 Helix-turn-helix domain LTQ02_19630 PF12852 Cupin LTQ02_19655 PF12697 Alpha/beta hydrolase family LTQ02_19660 PF08329 Chitinase A, N-terminal domain LTQ02_19660 PF00704 Glycosyl hydrolases family 18 LTQ02_19670 PF06865 Pyrimidine/purine nucleoside phosphorylase LTQ02_19675 PF02678 Pirin LTQ02_19675 PF05726 Pirin C-terminal cupin domain LTQ02_19685 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_19685 PF03707 Bacterial signalling protein N terminal repeat LTQ02_19685 PF00563 EAL domain LTQ02_19695 PF07690 Major Facilitator Superfamily LTQ02_19700 PF00196 Bacterial regulatory proteins, luxR family LTQ02_19700 PF00072 Response regulator receiver domain LTQ02_19705 PF05231 MASE1 LTQ02_19705 PF07730 Histidine kinase LTQ02_19705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_19710 PF07690 Major Facilitator Superfamily LTQ02_19715 PF01238 Phosphomannose isomerase type I LTQ02_19735 PF17773 UPF0176 acylphosphatase like domain LTQ02_19735 PF00581 Rhodanese-like domain LTQ02_19750 PF00155 Aminotransferase class I and II LTQ02_19755 PF12833 Helix-turn-helix domain LTQ02_19755 PF01497 Periplasmic binding protein LTQ02_19760 PF01554 MatE LTQ02_19770 PF00005 ABC transporter LTQ02_19775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19805 PF03466 LysR substrate binding domain LTQ02_19830 PF00356 Bacterial regulatory proteins, lacI family LTQ02_19840 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_19845 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_19855 PF00005 ABC transporter LTQ02_19855 PF17912 MalK OB fold domain LTQ02_19855 PF03459 TOBE domain LTQ02_19860 PF06165 Glycosyltransferase family 36 LTQ02_19860 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LTQ02_19900 PF00005 ABC transporter LTQ02_19900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_19910 PF05362 Lon protease (S16) C-terminal proteolytic domain LTQ02_19910 PF13654 AAA domain LTQ02_19915 PF12945 Flagellar protein YcgR LTQ02_19915 PF07238 PilZ domain LTQ02_19945 PF00892 EamA-like transporter family LTQ02_19950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19950 PF03466 LysR substrate binding domain LTQ02_19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_19975 PF03466 LysR substrate binding domain LTQ02_19985 PF01047 MarR family LTQ02_19990 PF07681 DoxX LTQ02_20005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ02_20005 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ02_20005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ02_20010 PF01261 Xylose isomerase-like TIM barrel LTQ02_20015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LTQ02_20015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LTQ02_20020 PF05161 MOFRL family LTQ02_20020 PF13660 Domain of unknown function (DUF4147) LTQ02_20030 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_20030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_20035 PF00072 Response regulator receiver domain LTQ02_20035 PF00486 Transcriptional regulatory protein, C terminal LTQ02_20045 PF00873 AcrB/AcrD/AcrF family LTQ02_20050 PF01979 Amidohydrolase family LTQ02_20065 PF01979 Amidohydrolase family LTQ02_20070 PF00860 Permease family LTQ02_20075 PF00860 Permease family LTQ02_20080 PF00576 HIUase/Transthyretin family LTQ02_20090 PF01014 Uricase LTQ02_20090 PF09349 OHCU decarboxylase LTQ02_20095 PF03561 Allantoicase repeat LTQ02_20100 PF04115 Ureidoglycolate lyase LTQ02_20115 PF04229 GrpB protein LTQ02_20130 PF13411 MerR HTH family regulatory protein LTQ02_20135 PF02627 Carboxymuconolactone decarboxylase family LTQ02_20145 PF01979 Amidohydrolase family LTQ02_20155 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LTQ02_20155 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LTQ02_20160 PF00941 FAD binding domain in molybdopterin dehydrogenase LTQ02_20160 PF03450 CO dehydrogenase flavoprotein C-terminal domain LTQ02_20180 PF01966 HD domain LTQ02_20185 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_20190 PF03605 Anaerobic c4-dicarboxylate membrane transporter LTQ02_20195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20195 PF03466 LysR substrate binding domain LTQ02_20200 PF00171 Aldehyde dehydrogenase family LTQ02_20205 PF06441 Epoxide hydrolase N terminus LTQ02_20245 PF02264 LamB porin LTQ02_20245 PF11471 Maltoporin periplasmic N-terminal extension LTQ02_20250 PF00356 Bacterial regulatory proteins, lacI family LTQ02_20255 PF00367 phosphotransferase system, EIIB LTQ02_20255 PF02378 Phosphotransferase system, EIIC LTQ02_20260 PF00294 pfkB family carbohydrate kinase LTQ02_20265 PF08244 Glycosyl hydrolases family 32 C terminal LTQ02_20265 PF00251 Glycosyl hydrolases family 32 N-terminal domain LTQ02_20275 PF14497 Glutathione S-transferase, C-terminal domain LTQ02_20275 PF02798 Glutathione S-transferase, N-terminal domain LTQ02_20280 PF03466 LysR substrate binding domain LTQ02_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20285 PF00672 HAMP domain LTQ02_20285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_20290 PF01590 GAF domain LTQ02_20290 PF00158 Sigma-54 interaction domain LTQ02_20290 PF02954 Bacterial regulatory protein, Fis family LTQ02_20295 PF00171 Aldehyde dehydrogenase family LTQ02_20300 PF13344 Haloacid dehalogenase-like hydrolase LTQ02_20300 PF00293 NUDIX domain LTQ02_20315 PF00756 Putative esterase LTQ02_20320 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_20320 PF00107 Zinc-binding dehydrogenase LTQ02_20330 PF00893 Small Multidrug Resistance protein LTQ02_20340 PF00246 Zinc carboxypeptidase LTQ02_20345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_20355 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_20355 PF03707 Bacterial signalling protein N terminal repeat LTQ02_20355 PF00563 EAL domain LTQ02_20370 PF01238 Phosphomannose isomerase type I LTQ02_20375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_20375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_20375 PF02378 Phosphotransferase system, EIIC LTQ02_20380 PF12833 Helix-turn-helix domain LTQ02_20390 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_20405 PF13977 BetI-type transcriptional repressor, C-terminal LTQ02_20405 PF00440 Bacterial regulatory proteins, tetR family LTQ02_20415 PF13460 NAD(P)H-binding LTQ02_20415 PF11066 Protein of unknown function (DUF2867) LTQ02_20425 PF12729 Four helix bundle sensory module for signal transduction LTQ02_20425 PF00672 HAMP domain LTQ02_20425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_20435 PF00171 Aldehyde dehydrogenase family LTQ02_20445 PF02566 OsmC-like protein LTQ02_20450 PF01047 MarR family LTQ02_20455 PF03222 Tryptophan/tyrosine permease family LTQ02_20460 PF07690 Major Facilitator Superfamily LTQ02_20465 PF03466 LysR substrate binding domain LTQ02_20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20475 PF00392 Bacterial regulatory proteins, gntR family LTQ02_20475 PF00155 Aminotransferase class I and II LTQ02_20490 PF00672 HAMP domain LTQ02_20490 PF02743 Cache domain LTQ02_20490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_20500 PF03466 LysR substrate binding domain LTQ02_20500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20510 PF17200 Single Cache domain 2 LTQ02_20510 PF00672 HAMP domain LTQ02_20510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_20525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20525 PF03466 LysR substrate binding domain LTQ02_20535 PF13378 Enolase C-terminal domain-like LTQ02_20535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LTQ02_20545 PF00158 Sigma-54 interaction domain LTQ02_20545 PF02954 Bacterial regulatory protein, Fis family LTQ02_20545 PF00072 Response regulator receiver domain LTQ02_20560 PF00005 ABC transporter LTQ02_20565 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_20570 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_20595 PF03606 C4-dicarboxylate anaerobic carrier LTQ02_20600 PF00483 Nucleotidyl transferase LTQ02_20615 PF00501 AMP-binding enzyme LTQ02_20620 PF00501 AMP-binding enzyme LTQ02_20620 PF00668 Condensation domain LTQ02_20620 PF00550 Phosphopantetheine attachment site LTQ02_20620 PF13193 AMP-binding enzyme C-terminal domain LTQ02_20625 PF00106 short chain dehydrogenase LTQ02_20630 PF03466 LysR substrate binding domain LTQ02_20630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20635 PF01638 HxlR-like helix-turn-helix LTQ02_20650 PF13460 NAD(P)H-binding LTQ02_20655 PF03466 LysR substrate binding domain LTQ02_20655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_20665 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LTQ02_20695 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LTQ02_20700 PF04542 Sigma-70 region 2 LTQ02_20700 PF08281 Sigma-70, region 4 LTQ02_20720 PF04013 Putative SAM-dependent RNA methyltransferase LTQ02_20785 PF01554 MatE LTQ02_20790 PF02896 PEP-utilising enzyme, TIM barrel domain LTQ02_20790 PF00391 PEP-utilising enzyme, mobile domain LTQ02_20790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LTQ02_20795 PF03618 Kinase/pyrophosphorylase LTQ02_20800 PF13417 Glutathione S-transferase, N-terminal domain LTQ02_20800 PF04399 Glutaredoxin 2, C terminal domain LTQ02_20810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LTQ02_20830 PF03009 Glycerophosphoryl diester phosphodiesterase family LTQ02_20835 PF17912 MalK OB fold domain LTQ02_20835 PF00005 ABC transporter LTQ02_20840 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_20845 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_20850 PF13416 Bacterial extracellular solute-binding protein LTQ02_20870 PF08443 RimK-like ATP-grasp domain LTQ02_20870 PF18030 RimK PreATP-grasp domain LTQ02_20875 PF18030 RimK PreATP-grasp domain LTQ02_20875 PF08443 RimK-like ATP-grasp domain LTQ02_20880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_20880 PF12793 Sugar transport-related sRNA regulator N-term LTQ02_20885 PF12706 Beta-lactamase superfamily domain LTQ02_20910 PF00171 Aldehyde dehydrogenase family LTQ02_20915 PF09339 IclR helix-turn-helix domain LTQ02_20915 PF01614 Bacterial transcriptional regulator LTQ02_20920 PF01515 Phosphate acetyl/butaryl transferase LTQ02_20925 PF01925 Sulfite exporter TauE/SafE LTQ02_20930 PF06213 Cobalamin biosynthesis protein CobT LTQ02_20930 PF11775 Cobalamin biosynthesis protein CobT VWA domain LTQ02_20935 PF07728 AAA domain (dynein-related subfamily) LTQ02_20935 PF08406 CbbQ/NirQ/NorQ C-terminal LTQ02_20935 PF12556 Cobaltochelatase CobS subunit N terminal LTQ02_20940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LTQ02_20940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTQ02_20940 PF00205 Thiamine pyrophosphate enzyme, central domain LTQ02_20955 PF01266 FAD dependent oxidoreductase LTQ02_20960 PF03480 Bacterial extracellular solute-binding protein, family 7 LTQ02_20965 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ02_20970 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LTQ02_20970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LTQ02_20985 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_20995 PF05661 Protein of unknown function (DUF808) LTQ02_21000 PF01979 Amidohydrolase family LTQ02_21010 PF03476 MOSC N-terminal beta barrel domain LTQ02_21010 PF00111 2Fe-2S iron-sulfur cluster binding domain LTQ02_21010 PF03473 MOSC domain LTQ02_21015 PF02540 NAD synthase LTQ02_21020 PF01467 Cytidylyltransferase-like LTQ02_21060 PF00005 ABC transporter LTQ02_21065 PF01032 FecCD transport family LTQ02_21075 PF02472 Biopolymer transport protein ExbD/TolR LTQ02_21080 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_21085 PF03544 Gram-negative bacterial TonB protein C-terminal LTQ02_21090 PF04055 Radical SAM superfamily LTQ02_21095 PF06228 Haem utilisation ChuX/HutX LTQ02_21100 PF01243 Pyridoxamine 5'-phosphate oxidase LTQ02_21105 PF01923 Cobalamin adenosyltransferase LTQ02_21110 PF01584 CheW-like domain LTQ02_21110 PF00072 Response regulator receiver domain LTQ02_21120 PF00128 Alpha amylase, catalytic domain LTQ02_21125 PF02743 Cache domain LTQ02_21125 PF00672 HAMP domain LTQ02_21125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_21130 PF07670 Nucleoside recognition LTQ02_21155 PF01551 Peptidase family M23 LTQ02_21155 PF08525 Opacity-associated protein A N-terminal motif LTQ02_21155 PF01476 LysM domain LTQ02_21160 PF00563 EAL domain LTQ02_21160 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_21160 PF08447 PAS fold LTQ02_21160 PF08448 PAS fold LTQ02_21165 PF03466 LysR substrate binding domain LTQ02_21165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_21170 PF07690 Major Facilitator Superfamily LTQ02_21180 PF00462 Glutaredoxin LTQ02_21185 PF00892 EamA-like transporter family LTQ02_21205 PF00085 Thioredoxin LTQ02_21210 PF02683 Cytochrome C biogenesis protein transmembrane region LTQ02_21210 PF11412 Disulphide bond corrector protein DsbC LTQ02_21225 PF05552 Conserved TM helix LTQ02_21225 PF00924 Mechanosensitive ion channel LTQ02_21270 PF00248 Aldo/keto reductase family LTQ02_21275 PF00271 Helicase conserved C-terminal domain LTQ02_21275 PF00270 DEAD/DEAH box helicase LTQ02_21275 PF03880 DbpA RNA binding domain LTQ02_21290 PF11490 DNA polymerase III polC-type N-terminus II LTQ02_21290 PF07733 Bacterial DNA polymerase III alpha NTPase domain LTQ02_21290 PF14579 Helix-hairpin-helix motif LTQ02_21290 PF02811 PHP domain LTQ02_21290 PF00929 Exonuclease LTQ02_21290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LTQ02_21300 PF00271 Helicase conserved C-terminal domain LTQ02_21300 PF00270 DEAD/DEAH box helicase LTQ02_21305 PF00881 Nitroreductase family LTQ02_21315 PF11953 Domain of unknown function (DUF3470) LTQ02_21315 PF00037 4Fe-4S binding domain LTQ02_21320 PF00588 SpoU rRNA Methylase family LTQ02_21320 PF08032 RNA 2'-O ribose methyltransferase substrate binding LTQ02_21325 PF00248 Aldo/keto reductase family LTQ02_21335 PF07687 Peptidase dimerisation domain LTQ02_21335 PF01546 Peptidase family M20/M25/M40 LTQ02_21350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LTQ02_21355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_21360 PF00873 AcrB/AcrD/AcrF family LTQ02_21365 PF01575 MaoC like domain LTQ02_21370 PF12849 PBP superfamily domain LTQ02_21380 PF12833 Helix-turn-helix domain LTQ02_21385 PF17876 Cold shock domain LTQ02_21385 PF00773 RNB domain LTQ02_21385 PF08206 Ribonuclease B OB domain LTQ02_21385 PF00575 S1 RNA binding domain LTQ02_21390 PF03880 DbpA RNA binding domain LTQ02_21390 PF00270 DEAD/DEAH box helicase LTQ02_21390 PF00271 Helicase conserved C-terminal domain LTQ02_21395 PF00871 Acetokinase family LTQ02_21405 PF00571 CBS domain LTQ02_21405 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_21410 PF07883 Cupin domain LTQ02_21410 PF01381 Helix-turn-helix LTQ02_21415 PF03594 Benzoate membrane transport protein LTQ02_21440 PF00107 Zinc-binding dehydrogenase LTQ02_21440 PF08240 Alcohol dehydrogenase GroES-like domain LTQ02_21465 PF00892 EamA-like transporter family LTQ02_21470 PF00128 Alpha amylase, catalytic domain LTQ02_21475 PF01494 FAD binding domain LTQ02_21480 PF03466 LysR substrate binding domain LTQ02_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_21485 PF01554 MatE LTQ02_21515 PF00478 IMP dehydrogenase / GMP reductase domain LTQ02_21520 PF02223 Thymidylate kinase LTQ02_21540 PF08378 Nuclease-related domain LTQ02_21555 PF00486 Transcriptional regulatory protein, C terminal LTQ02_21555 PF18500 CadC C-terminal domain 1 LTQ02_21565 PF00043 Glutathione S-transferase, C-terminal domain LTQ02_21565 PF13417 Glutathione S-transferase, N-terminal domain LTQ02_21590 PF00892 EamA-like transporter family LTQ02_21595 PF08543 Phosphomethylpyrimidine kinase LTQ02_21600 PF00005 ABC transporter LTQ02_21605 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_21610 PF09084 NMT1/THI5 like LTQ02_21615 PF03070 TENA/THI-4/PQQC family LTQ02_21620 PF02110 Hydroxyethylthiazole kinase family LTQ02_21625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_21625 PF00672 HAMP domain LTQ02_21625 PF02743 Cache domain LTQ02_21630 PF02581 Thiamine monophosphate synthase LTQ02_21640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_21640 PF03466 LysR substrate binding domain LTQ02_21650 PF12833 Helix-turn-helix domain LTQ02_21650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ02_21655 PF01979 Amidohydrolase family LTQ02_21680 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_21690 PF13533 Biotin-lipoyl like LTQ02_21700 PF01594 AI-2E family transporter LTQ02_21730 PF01497 Periplasmic binding protein LTQ02_21735 PF01032 FecCD transport family LTQ02_21740 PF01032 FecCD transport family LTQ02_21745 PF00005 ABC transporter LTQ02_21750 PF00072 Response regulator receiver domain LTQ02_21755 PF00072 Response regulator receiver domain LTQ02_21755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_21755 PF00672 HAMP domain LTQ02_21755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ02_21755 PF01627 Hpt domain LTQ02_21755 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_21760 PF03466 LysR substrate binding domain LTQ02_21760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_21765 PF07690 Major Facilitator Superfamily LTQ02_21770 PF05547 Immune inhibitor A peptidase M6 LTQ02_21770 PF00801 PKD domain LTQ02_21785 PF01037 Lrp/AsnC ligand binding domain LTQ02_21790 PF08447 PAS fold LTQ02_21790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_21795 PF02780 Transketolase, C-terminal domain LTQ02_21795 PF02779 Transketolase, pyrimidine binding domain LTQ02_21795 PF00456 Transketolase, thiamine diphosphate binding domain LTQ02_21800 PF00923 Transaldolase/Fructose-6-phosphate aldolase LTQ02_21810 PF00704 Glycosyl hydrolases family 18 LTQ02_21810 PF08329 Chitinase A, N-terminal domain LTQ02_21815 PF00360 Phytochrome region LTQ02_21815 PF00563 EAL domain LTQ02_21815 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_21815 PF01590 GAF domain LTQ02_21820 PF00581 Rhodanese-like domain LTQ02_21840 PF00899 ThiF family LTQ02_21845 PF00994 Probable molybdopterin binding domain LTQ02_21845 PF03454 MoeA C-terminal region (domain IV) LTQ02_21845 PF03453 MoeA N-terminal region (domain I and II) LTQ02_21850 PF01227 GTP cyclohydrolase I LTQ02_21855 PF03577 Peptidase family C69 LTQ02_21865 PF07152 YaeQ protein LTQ02_21870 PF00313 'Cold-shock' DNA-binding domain LTQ02_21875 PF07995 Glucose / Sorbosone dehydrogenase LTQ02_21880 PF07690 Major Facilitator Superfamily LTQ02_21885 PF00005 ABC transporter LTQ02_21895 PF12833 Helix-turn-helix domain LTQ02_21915 PF00378 Enoyl-CoA hydratase/isomerase LTQ02_21935 PF02080 TrkA-C domain LTQ02_21935 PF06826 Predicted Permease Membrane Region LTQ02_21945 PF13533 Biotin-lipoyl like LTQ02_21950 PF00873 AcrB/AcrD/AcrF family LTQ02_21960 PF02253 Phospholipase A1 LTQ02_21965 PF00486 Transcriptional regulatory protein, C terminal LTQ02_21965 PF18500 CadC C-terminal domain 1 LTQ02_21975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LTQ02_21975 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_21980 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_21990 PF00005 ABC transporter LTQ02_21990 PF00664 ABC transporter transmembrane region LTQ02_21995 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_22015 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_22015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_22020 PF00873 AcrB/AcrD/AcrF family LTQ02_22050 PF03831 PhnA domain LTQ02_22050 PF08274 PhnA Zinc-Ribbon LTQ02_22070 PF02311 AraC-like ligand binding domain LTQ02_22070 PF12833 Helix-turn-helix domain LTQ02_22085 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_22090 PF00497 Bacterial extracellular solute-binding proteins, family 3 LTQ02_22095 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_22100 PF00005 ABC transporter LTQ02_22105 PF00465 Iron-containing alcohol dehydrogenase LTQ02_22110 PF06719 AraC-type transcriptional regulator N-terminus LTQ02_22110 PF12833 Helix-turn-helix domain LTQ02_22120 PF01042 Endoribonuclease L-PSP LTQ02_22150 PF00132 Bacterial transferase hexapeptide (six repeats) LTQ02_22150 PF14602 Hexapeptide repeat of succinyl-transferase LTQ02_22150 PF12804 MobA-like NTP transferase domain LTQ02_22170 PF04224 Protein of unknown function, DUF417 LTQ02_22175 PF01042 Endoribonuclease L-PSP LTQ02_22180 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_22190 PF00704 Glycosyl hydrolases family 18 LTQ02_22190 PF06483 Chitinase C LTQ02_22195 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_22195 PF07694 5TMR of 5TMR-LYT LTQ02_22210 PF00768 D-alanyl-D-alanine carboxypeptidase LTQ02_22210 PF07943 Penicillin-binding protein 5, C-terminal domain LTQ02_22230 PF16884 N-terminal domain of oxidoreductase LTQ02_22230 PF00107 Zinc-binding dehydrogenase LTQ02_22235 PF00440 Bacterial regulatory proteins, tetR family LTQ02_22235 PF16925 Tetracyclin repressor-like, C-terminal domain LTQ02_22240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LTQ02_22240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LTQ02_22250 PF04972 BON domain LTQ02_22250 PF00691 OmpA family LTQ02_22260 PF00158 Sigma-54 interaction domain LTQ02_22260 PF01590 GAF domain LTQ02_22265 PF00970 Oxidoreductase FAD-binding domain LTQ02_22265 PF00042 Globin LTQ02_22265 PF00175 Oxidoreductase NAD-binding domain LTQ02_22280 PF00654 Voltage gated chloride channel LTQ02_22285 PF02492 CobW/HypB/UreG, nucleotide-binding domain LTQ02_22285 PF07683 Cobalamin synthesis protein cobW C-terminal domain LTQ02_22290 PF00270 DEAD/DEAH box helicase LTQ02_22290 PF00271 Helicase conserved C-terminal domain LTQ02_22295 PF01810 LysE type translocator LTQ02_22320 PF00072 Response regulator receiver domain LTQ02_22320 PF00486 Transcriptional regulatory protein, C terminal LTQ02_22325 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_22325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_22340 PF01037 Lrp/AsnC ligand binding domain LTQ02_22365 PF03264 NapC/NirT cytochrome c family, N-terminal region LTQ02_22370 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LTQ02_22375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LTQ02_22375 PF01568 Molydopterin dinucleotide binding domain LTQ02_22375 PF00384 Molybdopterin oxidoreductase LTQ02_22385 PF13187 4Fe-4S dicluster domain LTQ02_22385 PF00037 4Fe-4S binding domain LTQ02_22385 PF12800 4Fe-4S binding domain LTQ02_22390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_22390 PF07730 Histidine kinase LTQ02_22390 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LTQ02_22390 PF00672 HAMP domain LTQ02_22395 PF00196 Bacterial regulatory proteins, luxR family LTQ02_22395 PF00072 Response regulator receiver domain LTQ02_22415 PF12262 Bacterial virulence factor lipase N-terminal LTQ02_22420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LTQ02_22430 PF00873 AcrB/AcrD/AcrF family LTQ02_22450 PF07702 UTRA domain LTQ02_22450 PF00392 Bacterial regulatory proteins, gntR family LTQ02_22455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LTQ02_22455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LTQ02_22455 PF02378 Phosphotransferase system, EIIC LTQ02_22460 PF09261 Alpha mannosidase middle domain LTQ02_22460 PF07748 Glycosyl hydrolases family 38 C-terminal domain LTQ02_22460 PF01074 Glycosyl hydrolases family 38 N-terminal domain LTQ02_22465 PF02595 Glycerate kinase family LTQ02_22470 PF01238 Phosphomannose isomerase type I LTQ02_22495 PF05230 MASE2 domain LTQ02_22495 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_22500 PF01926 50S ribosome-binding GTPase LTQ02_22505 PF00034 Cytochrome c LTQ02_22510 PF00196 Bacterial regulatory proteins, luxR family LTQ02_22545 PF01212 Beta-eliminating lyase LTQ02_22550 PF00293 NUDIX domain LTQ02_22555 PF12592 Protein of unknown function (DUF3763) LTQ02_22555 PF17868 AAA lid domain LTQ02_22555 PF07728 AAA domain (dynein-related subfamily) LTQ02_22560 PF05762 VWA domain containing CoxE-like protein LTQ02_22585 PF00672 HAMP domain LTQ02_22585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_22620 PF04393 Protein of unknown function (DUF535) LTQ02_22635 PF02472 Biopolymer transport protein ExbD/TolR LTQ02_22640 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_22680 PF08281 Sigma-70, region 4 LTQ02_22680 PF04542 Sigma-70 region 2 LTQ02_22690 PF03150 Di-haem cytochrome c peroxidase LTQ02_22695 PF00034 Cytochrome c LTQ02_22695 PF03150 Di-haem cytochrome c peroxidase LTQ02_22705 PF18465 Rieske 3Fe-4S LTQ02_22705 PF00384 Molybdopterin oxidoreductase LTQ02_22705 PF01568 Molydopterin dinucleotide binding domain LTQ02_22720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LTQ02_22720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LTQ02_22720 PF04324 BFD-like [2Fe-2S] binding domain LTQ02_22720 PF18267 Rubredoxin NAD+ reductase C-terminal domain LTQ02_22720 PF07992 Pyridine nucleotide-disulphide oxidoreductase LTQ02_22725 PF13806 Rieske-like [2Fe-2S] domain LTQ02_22730 PF01226 Formate/nitrite transporter LTQ02_22735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LTQ02_22735 PF14824 Sirohaem biosynthesis protein central LTQ02_22735 PF10414 Sirohaem synthase dimerisation region LTQ02_22750 PF00486 Transcriptional regulatory protein, C terminal LTQ02_22750 PF00072 Response regulator receiver domain LTQ02_22755 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_22755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_22755 PF00672 HAMP domain LTQ02_22755 PF16527 Two-component sensor protein CpxA, periplasmic domain LTQ02_22760 PF00375 Sodium:dicarboxylate symporter family LTQ02_22765 PF00593 TonB dependent receptor LTQ02_22765 PF07715 TonB-dependent Receptor Plug Domain LTQ02_22775 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_22780 PF01618 MotA/TolQ/ExbB proton channel family LTQ02_22785 PF02472 Biopolymer transport protein ExbD/TolR LTQ02_22830 PF01297 Zinc-uptake complex component A periplasmic LTQ02_22835 PF00005 ABC transporter LTQ02_22840 PF00950 ABC 3 transport family LTQ02_22860 PF11756 Nitrous oxide-stimulated promoter LTQ02_22865 PF01554 MatE LTQ02_22885 PF07690 Major Facilitator Superfamily LTQ02_22890 PF12833 Helix-turn-helix domain LTQ02_22890 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LTQ02_22895 PF13193 AMP-binding enzyme C-terminal domain LTQ02_22895 PF00501 AMP-binding enzyme LTQ02_22900 PF00732 GMC oxidoreductase LTQ02_22900 PF05199 GMC oxidoreductase LTQ02_22905 PF00085 Thioredoxin LTQ02_22910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LTQ02_22910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LTQ02_22925 PF04143 Sulphur transport LTQ02_22940 PF13597 Anaerobic ribonucleoside-triphosphate reductase LTQ02_22940 PF03477 ATP cone domain LTQ02_22950 PF00155 Aminotransferase class I and II LTQ02_22955 PF08443 RimK-like ATP-grasp domain LTQ02_22955 PF18030 RimK PreATP-grasp domain LTQ02_22960 PF12848 ABC transporter LTQ02_22960 PF00005 ABC transporter LTQ02_22975 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LTQ02_22975 PF07685 CobB/CobQ-like glutamine amidotransferase domain LTQ02_22985 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_22990 PF00005 ABC transporter LTQ02_22990 PF03459 TOBE domain LTQ02_23000 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23000 PF00563 EAL domain LTQ02_23000 PF01590 GAF domain LTQ02_23000 PF00360 Phytochrome region LTQ02_23010 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23010 PF17158 Membrane-associated sensor, integral membrane domain LTQ02_23025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LTQ02_23025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LTQ02_23025 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LTQ02_23030 PF02233 NAD(P) transhydrogenase beta subunit LTQ02_23040 PF00072 Response regulator receiver domain LTQ02_23040 PF00486 Transcriptional regulatory protein, C terminal LTQ02_23055 PF03701 Uncharacterised protein family (UPF0181) LTQ02_23060 PF08448 PAS fold LTQ02_23060 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23085 PF01253 Translation initiation factor SUI1 LTQ02_23100 PF01820 D-ala D-ala ligase N-terminus LTQ02_23100 PF07478 D-ala D-ala ligase C-terminus LTQ02_23105 PF05036 Sporulation related domain LTQ02_23110 PF00583 Acetyltransferase (GNAT) family LTQ02_23110 PF13380 CoA binding domain LTQ02_23110 PF13607 Succinyl-CoA ligase like flavodoxin domain LTQ02_23115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23115 PF03466 LysR substrate binding domain LTQ02_23120 PF07715 TonB-dependent Receptor Plug Domain LTQ02_23120 PF00593 TonB dependent receptor LTQ02_23120 PF04886 PT repeat LTQ02_23125 PF16363 GDP-mannose 4,6 dehydratase LTQ02_23130 PF03707 Bacterial signalling protein N terminal repeat LTQ02_23130 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23130 PF00563 EAL domain LTQ02_23145 PF03746 LamB/YcsF family LTQ02_23150 PF02682 Carboxyltransferase domain, subdomain C and D LTQ02_23155 PF02626 Carboxyltransferase domain, subdomain A and B LTQ02_23170 PF00005 ABC transporter LTQ02_23175 PF13472 GDSL-like Lipase/Acylhydrolase family LTQ02_23180 PF07055 Enoyl reductase FAD binding domain LTQ02_23180 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LTQ02_23180 PF12241 Trans-2-enoyl-CoA reductase catalytic region LTQ02_23185 PF00563 EAL domain LTQ02_23185 PF00498 FHA domain LTQ02_23185 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23195 PF03717 Penicillin-binding Protein dimerisation domain LTQ02_23195 PF00905 Penicillin binding protein transpeptidase domain LTQ02_23200 PF00684 DnaJ central domain LTQ02_23200 PF00226 DnaJ domain LTQ02_23200 PF01556 DnaJ C terminal domain LTQ02_23220 PF00892 EamA-like transporter family LTQ02_23225 PF12793 Sugar transport-related sRNA regulator N-term LTQ02_23225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_23235 PF03061 Thioesterase superfamily LTQ02_23240 PF01435 Peptidase family M48 LTQ02_23255 PF12262 Bacterial virulence factor lipase N-terminal LTQ02_23270 PF03466 LysR substrate binding domain LTQ02_23270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23285 PF08543 Phosphomethylpyrimidine kinase LTQ02_23290 PF00155 Aminotransferase class I and II LTQ02_23295 PF06826 Predicted Permease Membrane Region LTQ02_23295 PF02080 TrkA-C domain LTQ02_23305 PF13533 Biotin-lipoyl like LTQ02_23330 PF01177 Asp/Glu/Hydantoin racemase LTQ02_23340 PF00270 DEAD/DEAH box helicase LTQ02_23340 PF00271 Helicase conserved C-terminal domain LTQ02_23355 PF03741 Integral membrane protein TerC family LTQ02_23360 PF02872 5'-nucleotidase, C-terminal domain LTQ02_23360 PF00149 Calcineurin-like phosphoesterase LTQ02_23365 PF11398 Protein of unknown function (DUF2813) LTQ02_23370 PF06496 Protein of unknown function (DUF1097) LTQ02_23375 PF03466 LysR substrate binding domain LTQ02_23375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23380 PF01226 Formate/nitrite transporter LTQ02_23385 PF04264 YceI-like domain LTQ02_23390 PF01292 Prokaryotic cytochrome b561 LTQ02_23405 PF00563 EAL domain LTQ02_23405 PF12792 CSS motif domain associated with EAL LTQ02_23410 PF00873 AcrB/AcrD/AcrF family LTQ02_23415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_23415 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_23420 PF00529 HlyD membrane-fusion protein of T1SS LTQ02_23420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LTQ02_23430 PF00271 Helicase conserved C-terminal domain LTQ02_23430 PF00270 DEAD/DEAH box helicase LTQ02_23435 PF04336 Acyl carrier protein phosphodiesterase LTQ02_23440 PF03222 Tryptophan/tyrosine permease family LTQ02_23445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_23450 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_23455 PF11849 Domain of unknown function (DUF3369) LTQ02_23470 PF00294 pfkB family carbohydrate kinase LTQ02_23475 PF01268 Formate--tetrahydrofolate ligase LTQ02_23480 PF17158 Membrane-associated sensor, integral membrane domain LTQ02_23480 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23485 PF13419 Haloacid dehalogenase-like hydrolase LTQ02_23490 PF00472 RF-1 domain LTQ02_23510 PF01571 Aminomethyltransferase folate-binding domain LTQ02_23510 PF08669 Glycine cleavage T-protein C-terminal barrel domain LTQ02_23520 PF00464 Serine hydroxymethyltransferase LTQ02_23525 PF01597 Glycine cleavage H-protein LTQ02_23530 PF02347 Glycine cleavage system P-protein LTQ02_23545 PF01554 MatE LTQ02_23555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_23555 PF00672 HAMP domain LTQ02_23555 PF02743 Cache domain LTQ02_23560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23560 PF03466 LysR substrate binding domain LTQ02_23570 PF01810 LysE type translocator LTQ02_23585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LTQ02_23590 PF03413 Peptidase propeptide and YPEB domain LTQ02_23590 PF01447 Thermolysin metallopeptidase, catalytic domain LTQ02_23590 PF02868 Thermolysin metallopeptidase, alpha-helical domain LTQ02_23590 PF04151 Bacterial pre-peptidase C-terminal domain LTQ02_23590 PF07504 Fungalysin/Thermolysin Propeptide Motif LTQ02_23600 PF00579 tRNA synthetases class I (W and Y) LTQ02_23610 PF00291 Pyridoxal-phosphate dependent enzyme LTQ02_23615 PF07690 Major Facilitator Superfamily LTQ02_23625 PF01161 Phosphatidylethanolamine-binding protein LTQ02_23630 PF00672 HAMP domain LTQ02_23630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_23630 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_23630 PF00989 PAS fold LTQ02_23635 PF00072 Response regulator receiver domain LTQ02_23635 PF00486 Transcriptional regulatory protein, C terminal LTQ02_23650 PF03466 LysR substrate binding domain LTQ02_23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23655 PF13533 Biotin-lipoyl like LTQ02_23660 PF07690 Major Facilitator Superfamily LTQ02_23675 PF00140 Sigma-70 factor, region 1.2 LTQ02_23675 PF04539 Sigma-70 region 3 LTQ02_23675 PF04545 Sigma-70, region 4 LTQ02_23675 PF04542 Sigma-70 region 2 LTQ02_23695 PF13533 Biotin-lipoyl like LTQ02_23700 PF00072 Response regulator receiver domain LTQ02_23700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_23705 PF02321 Outer membrane efflux protein LTQ02_23710 PF00005 ABC transporter LTQ02_23710 PF00664 ABC transporter transmembrane region LTQ02_23715 PF00005 ABC transporter LTQ02_23725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LTQ02_23725 PF00072 Response regulator receiver domain LTQ02_23725 PF01627 Hpt domain LTQ02_23725 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_23725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_23725 PF00672 HAMP domain LTQ02_23750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LTQ02_23750 PF00672 HAMP domain LTQ02_23765 PF04055 Radical SAM superfamily LTQ02_23765 PF13186 Iron-sulfur cluster-binding domain LTQ02_23770 PF03781 Sulfatase-modifying factor enzyme 1 LTQ02_23780 PF13407 Periplasmic binding protein domain LTQ02_23790 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23790 PF03707 Bacterial signalling protein N terminal repeat LTQ02_23790 PF00563 EAL domain LTQ02_23795 PF03466 LysR substrate binding domain LTQ02_23795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_23810 PF13519 von Willebrand factor type A domain LTQ02_23825 PF07726 ATPase family associated with various cellular activities (AAA) LTQ02_23825 PF17863 AAA lid domain LTQ02_23835 PF00884 Sulfatase LTQ02_23840 PF00884 Sulfatase LTQ02_23845 PF00034 Cytochrome c LTQ02_23845 PF03150 Di-haem cytochrome c peroxidase LTQ02_23855 PF01609 Transposase DDE domain LTQ02_23855 PF13006 Insertion element 4 transposase N-terminal LTQ02_23860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_23860 PF09308 LuxQ, periplasmic LTQ02_23860 PF00072 Response regulator receiver domain LTQ02_23860 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_23870 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LTQ02_23885 PF00962 Adenosine/AMP deaminase LTQ02_23890 PF00072 Response regulator receiver domain LTQ02_23890 PF00196 Bacterial regulatory proteins, luxR family LTQ02_23905 PF02469 Fasciclin domain LTQ02_23935 PF02567 Phenazine biosynthesis-like protein LTQ02_23940 PF01810 LysE type translocator LTQ02_23950 PF00563 EAL domain LTQ02_23950 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_23950 PF03707 Bacterial signalling protein N terminal repeat LTQ02_23970 PF00115 Cytochrome C and Quinol oxidase polypeptide I LTQ02_23995 PF00561 alpha/beta hydrolase fold LTQ02_24010 PF02028 BCCT, betaine/carnitine/choline family transporter LTQ02_24020 PF00171 Aldehyde dehydrogenase family LTQ02_24030 PF03466 LysR substrate binding domain LTQ02_24030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_24040 PF00119 ATP synthase A chain LTQ02_24045 PF00137 ATP synthase subunit C LTQ02_24050 PF00430 ATP synthase B/B' CF(0) LTQ02_24055 PF00213 ATP synthase delta (OSCP) subunit LTQ02_24060 PF00306 ATP synthase alpha/beta chain, C terminal domain LTQ02_24060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_24060 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ02_24065 PF00231 ATP synthase LTQ02_24070 PF02874 ATP synthase alpha/beta family, beta-barrel domain LTQ02_24070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LTQ02_24075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LTQ02_24075 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LTQ02_24085 PF03466 LysR substrate binding domain LTQ02_24085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_24095 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_24095 PF00072 Response regulator receiver domain LTQ02_24095 PF09456 RcsC Alpha-Beta-Loop (ABL) LTQ02_24095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_24100 PF00072 Response regulator receiver domain LTQ02_24100 PF00486 Transcriptional regulatory protein, C terminal LTQ02_24115 PF00005 ABC transporter LTQ02_24115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_24120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_24120 PF00005 ABC transporter LTQ02_24125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_24135 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_24140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LTQ02_24140 PF00005 ABC transporter LTQ02_24145 PF12911 N-terminal TM domain of oligopeptide transport permease C LTQ02_24145 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_24150 PF00528 Binding-protein-dependent transport system inner membrane component LTQ02_24155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LTQ02_24175 PF05025 RbsD / FucU transport protein family LTQ02_24180 PF00005 ABC transporter LTQ02_24185 PF02653 Branched-chain amino acid transport system / permease component LTQ02_24190 PF13407 Periplasmic binding protein domain LTQ02_24195 PF00294 pfkB family carbohydrate kinase LTQ02_24200 PF00356 Bacterial regulatory proteins, lacI family LTQ02_24205 PF09308 LuxQ, periplasmic LTQ02_24205 PF00512 His Kinase A (phospho-acceptor) domain LTQ02_24205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTQ02_24205 PF00072 Response regulator receiver domain LTQ02_24225 PF00563 EAL domain LTQ02_24225 PF00990 Diguanylate cyclase, GGDEF domain LTQ02_24225 PF03707 Bacterial signalling protein N terminal repeat LTQ02_24230 PF03466 LysR substrate binding domain LTQ02_24230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LTQ02_24275 PF05016 ParE toxin of type II toxin-antitoxin system, parDE