locus-tag class description VS_0001 PF00258 Flavodoxin VS_0002 PF10396 GTP-binding protein TrmE N-terminus VS_0002 PF12631 MnmE helical domain VS_0002 PF01926 50S ribosome-binding GTPase VS_0005 PF00825 Ribonuclease P VS_0007 PF00005 ABC transporter VS_0008 PF00528 Binding-protein-dependent transport system inner membrane component VS_0009 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0011 PF02768 DNA polymerase III beta subunit, C-terminal domain VS_0011 PF02767 DNA polymerase III beta subunit, central domain VS_0011 PF00712 DNA polymerase III beta subunit, N-terminal domain VS_0013 PF00204 DNA gyrase B VS_0013 PF00986 DNA gyrase B subunit, carboxyl terminus VS_0013 PF01751 Toprim domain VS_0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0013 PF18053 DNA gyrase B subunit insert domain VS_0014 PF00011 Hsp20/alpha crystallin family VS_0015 PF00155 Aminotransferase class I and II VS_0019 PF13629 Pilus formation protein N terminal region VS_0019 PF04972 BON domain VS_0019 PF00263 Bacterial type II and III secretion system protein VS_0022 PF00437 Type II/IV secretion system protein VS_0029 PF00691 OmpA family VS_0030 PF08918 PhoQ Sensor VS_0030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0031 PF00072 Response regulator receiver domain VS_0031 PF00486 Transcriptional regulatory protein, C terminal VS_0035 PF01169 Uncharacterized protein family UPF0016 VS_0038 PF03466 LysR substrate binding domain VS_0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0039 PF08240 Alcohol dehydrogenase GroES-like domain VS_0039 PF00107 Zinc-binding dehydrogenase VS_0040 PF02803 Thiolase, C-terminal domain VS_0040 PF00108 Thiolase, N-terminal domain VS_0042 PF01205 Uncharacterized protein family UPF0029 VS_0042 PF09186 Domain of unknown function (DUF1949) VS_0043 PF02386 Cation transport protein VS_0044 PF12724 Flavodoxin domain VS_0060 PF03466 LysR substrate binding domain VS_0060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0062 PF04380 Membrane fusogenic activity VS_0063 PF00873 AcrB/AcrD/AcrF family VS_0064 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_0065 PF00440 Bacterial regulatory proteins, tetR family VS_0066 PF13361 UvrD-like helicase C-terminal domain VS_0066 PF00580 UvrD/REP helicase N-terminal domain VS_0067 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_0074 PF00005 ABC transporter VS_0074 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_0077 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_0077 PF00528 Binding-protein-dependent transport system inner membrane component VS_0079 PF03116 NQR2, RnfD, RnfE family VS_0082 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0082 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_0083 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VS_0084 PF01432 Peptidase family M3 VS_0085 PF01037 Lrp/AsnC ligand binding domain VS_0086 PF00563 EAL domain VS_0086 PF08448 PAS fold VS_0086 PF00990 Diguanylate cyclase, GGDEF domain VS_0089 PF00892 EamA-like transporter family VS_0090 PF00582 Universal stress protein family VS_0091 PF00210 Ferritin-like domain VS_0097 PF02646 RmuC family VS_0098 PF01209 ubiE/COQ5 methyltransferase family VS_0099 PF02036 SCP-2 sterol transfer family VS_0102 PF02416 mttA/Hcf106 family VS_0103 PF00902 Sec-independent protein translocase protein (TatC) VS_0104 PF01026 TatD related DNase VS_0105 PF00490 Delta-aminolevulinic acid dehydratase VS_0108 PF01367 5'-3' exonuclease, C-terminal SAM fold VS_0108 PF01612 3'-5' exonuclease VS_0108 PF00476 DNA polymerase family A VS_0108 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VS_0111 PF01926 50S ribosome-binding GTPase VS_0112 PF00034 Cytochrome c VS_0115 PF10675 Protein of unknown function (DUF2489) VS_0116 PF04055 Radical SAM superfamily VS_0116 PF06969 HemN C-terminal domain VS_0117 PF00563 EAL domain VS_0117 PF00990 Diguanylate cyclase, GGDEF domain VS_0117 PF03707 Bacterial signalling protein N terminal repeat VS_0118 PF02954 Bacterial regulatory protein, Fis family VS_0118 PF00072 Response regulator receiver domain VS_0118 PF00158 Sigma-54 interaction domain VS_0119 PF00512 His Kinase A (phospho-acceptor) domain VS_0119 PF00989 PAS fold VS_0119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0121 PF00120 Glutamine synthetase, catalytic domain VS_0121 PF03951 Glutamine synthetase, beta-Grasp domain VS_0128 PF00583 Acetyltransferase (GNAT) family VS_0128 PF09500 Putative thioesterase (yiiD_Cterm) VS_0132 PF01430 Hsp33 protein VS_0133 PF01479 S4 domain VS_0134 PF11356 Type II secretion system protein C VS_0135 PF03958 Bacterial type II/III secretion system short domain VS_0135 PF00263 Bacterial type II and III secretion system protein VS_0136 PF00437 Type II/IV secretion system protein VS_0137 PF00482 Type II secretion system (T2SS), protein F VS_0138 PF07963 Prokaryotic N-terminal methylation motif VS_0138 PF08334 Type II secretion system (T2SS), protein G VS_0139 PF12019 Type II transport protein GspH VS_0140 PF07963 Prokaryotic N-terminal methylation motif VS_0140 PF02501 Type II secretion system (T2SS), protein I VS_0141 PF11612 Type II secretion system (T2SS), protein J VS_0141 PF07963 Prokaryotic N-terminal methylation motif VS_0142 PF03934 Type II secretion system (T2SS), protein K VS_0143 PF05134 Type II secretion system (T2SS), protein L VS_0143 PF12693 GspL periplasmic domain VS_0144 PF04612 Type II secretion system (T2SS), protein M VS_0145 PF01203 Type II secretion system (T2SS), protein N VS_0146 PF00459 Inositol monophosphatase family VS_0147 PF00293 NUDIX domain VS_0148 PF01521 Iron-sulphur cluster biosynthesis VS_0148 PF01106 NifU-like domain VS_0149 PF00156 Phosphoribosyl transferase domain VS_0153 PF17674 HHH domain VS_0153 PF09371 Tex-like protein N-terminal domain VS_0153 PF16921 Tex protein YqgF-like domain VS_0153 PF00575 S1 RNA binding domain VS_0155 PF03449 Transcription elongation factor, N-terminal VS_0155 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_0156 PF00486 Transcriptional regulatory protein, C terminal VS_0156 PF00072 Response regulator receiver domain VS_0157 PF00512 His Kinase A (phospho-acceptor) domain VS_0157 PF00672 HAMP domain VS_0157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0158 PF00270 DEAD/DEAH box helicase VS_0158 PF00271 Helicase conserved C-terminal domain VS_0158 PF17191 RecG wedge domain VS_0159 PF13291 ACT domain VS_0159 PF02824 TGS domain VS_0159 PF04607 Region found in RelA / SpoT proteins VS_0161 PF00625 Guanylate kinase VS_0162 PF00860 Permease family VS_0165 PF00367 phosphotransferase system, EIIB VS_0165 PF02378 Phosphotransferase system, EIIC VS_0166 PF01546 Peptidase family M20/M25/M40 VS_0167 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VS_0168 PF00456 Transketolase, thiamine diphosphate binding domain VS_0168 PF02780 Transketolase, C-terminal domain VS_0168 PF02779 Transketolase, pyrimidine binding domain VS_0169 PF00923 Transaldolase/Fructose-6-phosphate aldolase VS_0170 PF13419 Haloacid dehalogenase-like hydrolase VS_0171 PF00465 Iron-containing alcohol dehydrogenase VS_0174 PF08220 DeoR-like helix-turn-helix domain VS_0174 PF00455 DeoR C terminal sensor domain VS_0175 PF00313 'Cold-shock' DNA-binding domain VS_0176 PF03755 YicC-like family, N-terminal region VS_0176 PF08340 Domain of unknown function (DUF1732) VS_0179 PF03279 Bacterial lipid A biosynthesis acyltransferase VS_0181 PF04127 DNA / pantothenate metabolism flavoprotein VS_0181 PF02441 Flavoprotein VS_0184 PF00471 Ribosomal protein L33 VS_0187 PF05686 Glycosyl transferase family 90 VS_0188 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_0189 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VS_0194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_0198 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0199 PF03279 Bacterial lipid A biosynthesis acyltransferase VS_0201 PF01370 NAD dependent epimerase/dehydratase family VS_0202 PF08360 QacR-like protein, C-terminal region VS_0202 PF00440 Bacterial regulatory proteins, tetR family VS_0203 PF01551 Peptidase family M23 VS_0204 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0204 PF06426 Serine acetyltransferase, N-terminal VS_0205 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VS_0205 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VS_0207 PF00581 Rhodanese-like domain VS_0212 PF06082 Exopolysaccharide biosynthesis protein YbjH VS_0213 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VS_0213 PF10531 SLBB domain VS_0213 PF02563 Polysaccharide biosynthesis/export protein VS_0214 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_0215 PF02706 Chain length determinant protein VS_0215 PF13807 G-rich domain on putative tyrosine kinase VS_0215 PF13614 AAA domain VS_0216 PF00793 DAHP synthetase I family VS_0218 PF02348 Cytidylyltransferase VS_0219 PF01380 SIS domain VS_0219 PF00571 CBS domain VS_0221 PF00535 Glycosyl transferase family 2 VS_0221 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VS_0225 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0226 PF00534 Glycosyl transferases group 1 VS_0227 PF16363 GDP-mannose 4,6 dehydratase VS_0228 PF00483 Nucleotidyl transferase VS_0229 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VS_0230 PF04321 RmlD substrate binding domain VS_0231 PF00535 Glycosyl transferase family 2 VS_0232 PF01370 NAD dependent epimerase/dehydratase family VS_0233 PF02397 Bacterial sugar transferase VS_0234 PF02719 Polysaccharide biosynthesis protein VS_0236 PF01554 MatE VS_0237 PF02706 Chain length determinant protein VS_0239 PF00118 TCP-1/cpn60 chaperonin family VS_0241 PF00990 Diguanylate cyclase, GGDEF domain VS_0242 PF02308 MgtC family VS_0243 PF04055 Radical SAM superfamily VS_0245 PF02313 Fumarate reductase subunit D VS_0247 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_0247 PF13183 4Fe-4S dicluster domain VS_0248 PF00890 FAD binding domain VS_0248 PF02910 Fumarate reductase flavoprotein C-term VS_0251 PF00672 HAMP domain VS_0251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0252 PF03600 Citrate transporter VS_0252 PF02080 TrkA-C domain VS_0253 PF02666 Phosphatidylserine decarboxylase VS_0254 PF03193 RsgA GTPase VS_0255 PF00929 Exonuclease VS_0265 PF08331 Domain of unknown function (DUF1730) VS_0266 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VS_0267 PF01520 N-acetylmuramoyl-L-alanine amidase VS_0268 PF01119 DNA mismatch repair protein, C-terminal domain VS_0268 PF08676 MutL C terminal dimerisation domain VS_0271 PF13167 GTP-binding GTPase N-terminal VS_0271 PF16360 GTP-binding GTPase Middle Region VS_0271 PF01926 50S ribosome-binding GTPase VS_0272 PF12221 Bacterial membrane protein N terminal VS_0272 PF01145 SPFH domain / Band 7 family VS_0273 PF01145 SPFH domain / Band 7 family VS_0274 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VS_0275 PF00709 Adenylosuccinate synthetase VS_0276 PF08238 Sel1 repeat VS_0277 PF01979 Amidohydrolase family VS_0278 PF08461 Ribonuclease R winged-helix domain VS_0278 PF08206 Ribonuclease B OB domain VS_0278 PF00773 RNB domain VS_0278 PF17876 Cold shock domain VS_0278 PF00575 S1 RNA binding domain VS_0279 PF08032 RNA 2'-O ribose methyltransferase substrate binding VS_0279 PF00588 SpoU rRNA Methylase family VS_0281 PF01084 Ribosomal protein S18 VS_0284 PF03796 DnaB-like helicase C terminal domain VS_0284 PF00772 DnaB-like helicase N terminal domain VS_0287 PF01894 Uncharacterised protein family UPF0047 VS_0290 PF01475 Ferric uptake regulator family VS_0294 PF01207 Dihydrouridine synthase (Dus) VS_0296 PF09583 Phage shock protein G (Phageshock_PspG) VS_0299 PF00175 Oxidoreductase NAD-binding domain VS_0299 PF00667 FAD binding domain VS_0299 PF00258 Flavodoxin VS_0314 PF00999 Sodium/hydrogen exchanger family VS_0315 PF02607 B12 binding domain VS_0315 PF02965 Vitamin B12 dependent methionine synthase, activation domain VS_0315 PF00809 Pterin binding enzyme VS_0315 PF02310 B12 binding domain VS_0315 PF02574 Homocysteine S-methyltransferase VS_0316 PF00696 Amino acid kinase family VS_0316 PF01842 ACT domain VS_0318 PF00266 Aminotransferase class-V VS_0320 PF00005 ABC transporter VS_0320 PF17760 UvrA interaction domain VS_0320 PF17755 UvrA DNA-binding domain VS_0321 PF00483 Nucleotidyl transferase VS_0322 PF00196 Bacterial regulatory proteins, luxR family VS_0323 PF00436 Single-strand binding protein family VS_0324 PF00990 Diguanylate cyclase, GGDEF domain VS_0324 PF17157 Gammaproteobacterial periplasmic sensor domain VS_0324 PF00563 EAL domain VS_0328 PF03958 Bacterial type II/III secretion system short domain VS_0328 PF00263 Bacterial type II and III secretion system protein VS_0329 PF13401 AAA domain VS_0329 PF01471 Putative peptidoglycan binding domain VS_0331 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_0331 PF00437 Type II/IV secretion system protein VS_0332 PF00482 Type II secretion system (T2SS), protein F VS_0334 PF00114 Pilin (bacterial filament) VS_0334 PF07963 Prokaryotic N-terminal methylation motif VS_0335 PF00114 Pilin (bacterial filament) VS_0335 PF07963 Prokaryotic N-terminal methylation motif VS_0342 PF04085 rod shape-determining protein MreC VS_0343 PF04093 rod shape-determining protein MreD VS_0344 PF02545 Maf-like protein VS_0345 PF10150 Ribonuclease E/G family VS_0345 PF00575 S1 RNA binding domain VS_0346 PF13116 Protein of unknown function VS_0346 PF13502 AsmA-like C-terminal region VS_0347 PF00795 Carbon-nitrogen hydrolase VS_0348 PF01523 Putative modulator of DNA gyrase VS_0349 PF13638 PIN domain VS_0349 PF02562 PhoH-like protein VS_0351 PF00849 RNA pseudouridylate synthase VS_0352 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_0352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_0353 PF00582 Universal stress protein family VS_0360 PF00348 Polyprenyl synthetase VS_0366 PF12821 Threonine/Serine exporter, ThrE VS_0367 PF00186 Dihydrofolate reductase VS_0368 PF00149 Calcineurin-like phosphoesterase VS_0371 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VS_0372 PF09312 SurA N-terminal domain VS_0372 PF00639 PPIC-type PPIASE domain VS_0373 PF03968 OstA-like protein VS_0373 PF04453 LPS transport system D VS_0374 PF00226 DnaJ domain VS_0374 PF05099 Tellurite resistance protein TerB VS_0378 PF00330 Aconitase family (aconitate hydratase) VS_0379 PF00180 Isocitrate/isopropylmalate dehydrogenase VS_0383 PF00873 AcrB/AcrD/AcrF family VS_0384 PF01569 PAP2 superfamily VS_0386 PF03466 LysR substrate binding domain VS_0386 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0387 PF00501 AMP-binding enzyme VS_0388 PF00205 Thiamine pyrophosphate enzyme, central domain VS_0388 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_0388 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_0389 PF10369 Small subunit of acetolactate synthase VS_0392 PF00224 Pyruvate kinase, barrel domain VS_0392 PF02887 Pyruvate kinase, alpha/beta domain VS_0393 PF00455 DeoR C terminal sensor domain VS_0393 PF08220 DeoR-like helix-turn-helix domain VS_0394 PF01380 SIS domain VS_0395 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_0397 PF04545 Sigma-70, region 4 VS_0397 PF04546 Sigma-70, non-essential region VS_0397 PF03979 Sigma-70 factor, region 1.1 VS_0397 PF00140 Sigma-70 factor, region 1.2 VS_0397 PF04542 Sigma-70 region 2 VS_0397 PF04539 Sigma-70 region 3 VS_0398 PF08275 DNA primase catalytic core, N-terminal domain VS_0398 PF08278 DNA primase DnaG DnaB-binding VS_0398 PF10410 DnaB-helicase binding domain of primase VS_0398 PF01807 CHC2 zinc finger VS_0399 PF09424 Yqey-like protein VS_0402 PF12697 Alpha/beta hydrolase family VS_0404 PF02152 Dihydroneopterin aldolase VS_0405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_0407 PF01966 HD domain VS_0407 PF01743 Poly A polymerase head domain VS_0407 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_0408 PF01471 Putative peptidoglycan binding domain VS_0408 PF13401 AAA domain VS_0410 PF08239 Bacterial SH3 domain VS_0411 PF01384 Phosphate transporter family VS_0412 PF01865 Protein of unknown function DUF47 VS_0413 PF01928 CYTH domain VS_0414 PF07885 Ion channel VS_0415 PF02743 Cache domain VS_0415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0415 PF00672 HAMP domain VS_0416 PF03710 Glutamate-ammonia ligase adenylyltransferase VS_0416 PF08335 GlnD PII-uridylyltransferase VS_0418 PF02321 Outer membrane efflux protein VS_0419 PF00293 NUDIX domain VS_0420 PF06853 Protein of unknown function (DUF1249) VS_0421 PF00149 Calcineurin-like phosphoesterase VS_0422 PF05728 Uncharacterised protein family (UPF0227) VS_0423 PF00986 DNA gyrase B subunit, carboxyl terminus VS_0423 PF01751 Toprim domain VS_0423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0423 PF00204 DNA gyrase B VS_0424 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_0424 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_0425 PF13180 PDZ domain VS_0426 PF00595 PDZ domain VS_0427 PF06295 Protein of unknown function (DUF1043) VS_0428 PF03969 AFG1-like ATPase VS_0431 PF00355 Rieske [2Fe-2S] domain VS_0431 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VS_0432 PF00033 Cytochrome b/b6/petB VS_0432 PF00032 Cytochrome b(C-terminal)/b6/petD VS_0433 PF02167 Cytochrome C1 family VS_0434 PF00043 Glutathione S-transferase, C-terminal domain VS_0434 PF02798 Glutathione S-transferase, N-terminal domain VS_0435 PF04386 Stringent starvation protein B VS_0436 PF04972 BON domain VS_0437 PF13580 SIS domain VS_0438 PF02021 Uncharacterised protein family UPF0102 VS_0439 PF04348 LppC putative lipoprotein VS_0440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_0443 PF04999 Cell division protein FtsL VS_0444 PF03717 Penicillin-binding Protein dimerisation domain VS_0444 PF00905 Penicillin binding protein transpeptidase domain VS_0445 PF08245 Mur ligase middle domain VS_0445 PF02875 Mur ligase family, glutamate ligase domain VS_0445 PF01225 Mur ligase family, catalytic domain VS_0446 PF02875 Mur ligase family, glutamate ligase domain VS_0446 PF01225 Mur ligase family, catalytic domain VS_0446 PF08245 Mur ligase middle domain VS_0449 PF01098 Cell cycle protein VS_0452 PF03799 Cell division protein FtsQ VS_0452 PF08478 POTRA domain, FtsQ-type VS_0453 PF02491 SHS2 domain inserted in FTSA VS_0454 PF00091 Tubulin/FtsZ family, GTPase domain VS_0454 PF12327 FtsZ family, C-terminal domain VS_0458 PF13276 HTH-like domain VS_0458 PF00665 Integrase core domain VS_0458 PF13333 Integrase core domain VS_0459 PF00293 NUDIX domain VS_0461 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VS_0461 PF00117 Glutamine amidotransferase class-I VS_0462 PF02142 MGS-like domain VS_0462 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VS_0462 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_0463 PF01925 Sulfite exporter TauE/SafE VS_0464 PF03466 LysR substrate binding domain VS_0464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0465 PF03458 UPF0126 domain VS_0466 PF01497 Periplasmic binding protein VS_0470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_0470 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0471 PF01493 GXGXG motif VS_0471 PF01645 Conserved region in glutamate synthase VS_0471 PF00310 Glutamine amidotransferases class-II VS_0471 PF04898 Glutamate synthase central domain VS_0472 PF01493 GXGXG motif VS_0472 PF01645 Conserved region in glutamate synthase VS_0472 PF04898 Glutamate synthase central domain VS_0472 PF00310 Glutamine amidotransferases class-II VS_0473 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_0473 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0474 PF00310 Glutamine amidotransferases class-II VS_0474 PF04898 Glutamate synthase central domain VS_0474 PF01645 Conserved region in glutamate synthase VS_0474 PF01493 GXGXG motif VS_0475 PF04055 Radical SAM superfamily VS_0475 PF16199 Radical_SAM C-terminal domain VS_0476 PF00563 EAL domain VS_0476 PF01590 GAF domain VS_0476 PF00990 Diguanylate cyclase, GGDEF domain VS_0476 PF00360 Phytochrome region VS_0477 PF18415 Histidine kinase receptor ArcB trans-membrane domain VS_0477 PF01627 Hpt domain VS_0477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0477 PF00512 His Kinase A (phospho-acceptor) domain VS_0477 PF00072 Response regulator receiver domain VS_0477 PF00989 PAS fold VS_0479 PF00486 Transcriptional regulatory protein, C terminal VS_0479 PF00072 Response regulator receiver domain VS_0480 PF03737 Aldolase/RraA VS_0483 PF00696 Amino acid kinase family VS_0483 PF01842 ACT domain VS_0483 PF13840 ACT domain VS_0483 PF00742 Homoserine dehydrogenase VS_0483 PF03447 Homoserine dehydrogenase, NAD binding domain VS_0485 PF00291 Pyridoxal-phosphate dependent enzyme VS_0485 PF14821 Threonine synthase N terminus VS_0492 PF01757 Acyltransferase family VS_0493 PF13737 Transposase DDE domain VS_0497 PF00665 Integrase core domain VS_0497 PF13276 HTH-like domain VS_0497 PF13333 Integrase core domain VS_0499 PF01261 Xylose isomerase-like TIM barrel VS_0501 PF03167 Uracil DNA glycosylase superfamily VS_0504 PF01235 Sodium:alanine symporter family VS_0506 PF00270 DEAD/DEAH box helicase VS_0506 PF00271 Helicase conserved C-terminal domain VS_0508 PF05525 Branched-chain amino acid transport protein VS_0511 PF00258 Flavodoxin VS_0512 PF00589 Phage integrase family VS_0512 PF02899 Phage integrase, N-terminal SAM-like domain VS_0513 PF10411 Disulfide bond isomerase protein N-terminus VS_0513 PF13098 Thioredoxin-like domain VS_0514 PF17768 RecJ OB domain VS_0514 PF02272 DHHA1 domain VS_0514 PF01368 DHH family VS_0516 PF03462 PCRF domain VS_0516 PF00472 RF-1 domain VS_0517 PF01336 OB-fold nucleic acid binding domain VS_0517 PF00152 tRNA synthetases class II (D, K and N) VS_0518 PF00158 Sigma-54 interaction domain VS_0518 PF06505 Activator of aromatic catabolism VS_0518 PF02830 V4R domain VS_0518 PF02954 Bacterial regulatory protein, Fis family VS_0522 PF02976 DNA mismatch repair enzyme MutH VS_0524 PF01590 GAF domain VS_0524 PF02896 PEP-utilising enzyme, TIM barrel domain VS_0524 PF05524 PEP-utilising enzyme, N-terminal VS_0524 PF00391 PEP-utilising enzyme, mobile domain VS_0525 PF01925 Sulfite exporter TauE/SafE VS_0528 PF00486 Transcriptional regulatory protein, C terminal VS_0528 PF00072 Response regulator receiver domain VS_0530 PF02690 Na+/Pi-cotransporter VS_0531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0531 PF03466 LysR substrate binding domain VS_0532 PF01022 Bacterial regulatory protein, arsR family VS_0534 PF03023 Lipid II flippase MurJ VS_0535 PF06574 FAD synthetase VS_0535 PF01687 Riboflavin kinase VS_0537 PF01252 Signal peptidase (SPase) II VS_0538 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_0539 PF02401 LytB protein VS_0540 PF04397 LytTr DNA-binding domain VS_0540 PF00072 Response regulator receiver domain VS_0541 PF07694 5TMR of 5TMR-LYT VS_0541 PF06580 Histidine kinase VS_0542 PF02554 Carbon starvation protein CstA VS_0545 PF03702 Anhydro-N-acetylmuramic acid kinase VS_0546 PF00933 Glycosyl hydrolase family 3 N terminal domain VS_0547 PF00793 DAHP synthetase I family VS_0548 PF01817 Chorismate mutase type II VS_0548 PF02153 Prephenate dehydrogenase VS_0549 PF04225 Opacity-associated protein A LysM-like domain VS_0549 PF01551 Peptidase family M23 VS_0550 PF07238 PilZ domain VS_0551 PF12848 ABC transporter VS_0551 PF00005 ABC transporter VS_0552 PF01464 Transglycosylase SLT domain VS_0552 PF14718 Soluble lytic murein transglycosylase L domain VS_0554 PF01931 Protein of unknown function DUF84 VS_0555 PF00990 Diguanylate cyclase, GGDEF domain VS_0555 PF00563 EAL domain VS_0556 PF00800 Prephenate dehydratase VS_0556 PF01817 Chorismate mutase type II VS_0557 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_0558 PF01464 Transglycosylase SLT domain VS_0559 PF13525 Outer membrane lipoprotein VS_0560 PF00849 RNA pseudouridylate synthase VS_0560 PF01479 S4 domain VS_0562 PF02861 Clp amino terminal domain, pathogenicity island component VS_0562 PF17871 AAA lid domain VS_0562 PF10431 C-terminal, D2-small domain, of ClpB protein VS_0562 PF07724 AAA domain (Cdc48 subfamily) VS_0562 PF00004 ATPase family associated with various cellular activities (AAA) VS_0574 PF03411 Penicillin-insensitive murein endopeptidase VS_0576 PF12838 4Fe-4S dicluster domain VS_0579 PF00072 Response regulator receiver domain VS_0579 PF00486 Transcriptional regulatory protein, C terminal VS_0580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0580 PF11808 Phosphate regulon sensor protein PhoR VS_0580 PF00989 PAS fold VS_0580 PF00512 His Kinase A (phospho-acceptor) domain VS_0581 PF12849 PBP superfamily domain VS_0582 PF02541 Ppx/GppA phosphatase family VS_0583 PF13089 Polyphosphate kinase N-terminal domain VS_0583 PF17941 Polyphosphate kinase C-terminal domain 1 VS_0583 PF02503 Polyphosphate kinase middle domain VS_0583 PF13090 Polyphosphate kinase C-terminal domain 2 VS_0585 PF00528 Binding-protein-dependent transport system inner membrane component VS_0586 PF00528 Binding-protein-dependent transport system inner membrane component VS_0587 PF00005 ABC transporter VS_0588 PF01895 PhoU domain VS_0591 PF03466 LysR substrate binding domain VS_0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0593 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_0593 PF00578 AhpC/TSA family VS_0594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0594 PF03466 LysR substrate binding domain VS_0595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0597 PF00571 CBS domain VS_0600 PF02699 Preprotein translocase subunit VS_0601 PF13721 SecD export protein N-terminal TM region VS_0601 PF02355 Protein export membrane protein VS_0601 PF07549 SecD/SecF GG Motif VS_0602 PF07549 SecD/SecF GG Motif VS_0602 PF02355 Protein export membrane protein VS_0604 PF00459 Inositol monophosphatase family VS_0605 PF00588 SpoU rRNA Methylase family VS_0608 PF01592 NifU-like N terminal domain VS_0609 PF01521 Iron-sulphur cluster biosynthesis VS_0612 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_0613 PF04384 Iron-sulphur cluster assembly VS_0618 PF13464 Domain of unknown function (DUF4115) VS_0621 PF09976 Tetratricopeptide repeat-like domain VS_0622 PF13360 PQQ-like domain VS_0624 PF02272 DHHA1 domain VS_0624 PF01411 tRNA synthetases class II (A) VS_0624 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_0625 PF08448 PAS fold VS_0625 PF00990 Diguanylate cyclase, GGDEF domain VS_0627 PF13742 OB-fold nucleic acid binding domain VS_0627 PF02601 Exonuclease VII, large subunit VS_0628 PF00571 CBS domain VS_0628 PF00478 IMP dehydrogenase / GMP reductase domain VS_0630 PF06483 Chitinase C VS_0630 PF00704 Glycosyl hydrolases family 18 VS_0632 PF01184 GPR1/FUN34/yaaH family VS_0633 PF01235 Sodium:alanine symporter family VS_0634 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VS_0634 PF00753 Metallo-beta-lactamase superfamily VS_0634 PF10996 Beta-Casp domain VS_0635 PF01553 Acyltransferase VS_0640 PF18030 RimK PreATP-grasp domain VS_0640 PF08443 RimK-like ATP-grasp domain VS_0642 PF01668 SmpB protein VS_0643 PF03364 Polyketide cyclase / dehydrase and lipid transport VS_0644 PF03658 RnfH family Ubiquitin VS_0645 PF04355 SmpA / OmlA family VS_0646 PF02463 RecF/RecN/SMC N terminal domain VS_0650 PF00375 Sodium:dicarboxylate symporter family VS_0653 PF00114 Pilin (bacterial filament) VS_0653 PF07963 Prokaryotic N-terminal methylation motif VS_0659 PF03806 AbgT putative transporter family VS_0660 PF00571 CBS domain VS_0660 PF03471 Transporter associated domain VS_0660 PF01595 Cyclin M transmembrane N-terminal domain VS_0661 PF14437 MafB19-like deaminase VS_0663 PF01464 Transglycosylase SLT domain VS_0663 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0664 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VS_0664 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VS_0664 PF02769 AIR synthase related protein, C-terminal domain VS_0666 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VS_0666 PF14602 Hexapeptide repeat of succinyl-transferase VS_0667 PF01914 MarC family integral membrane protein VS_0670 PF07130 YebG protein VS_0671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0671 PF03466 LysR substrate binding domain VS_0673 PF17946 RecC C-terminal domain VS_0675 PF13361 UvrD-like helicase C-terminal domain VS_0675 PF00580 UvrD/REP helicase N-terminal domain VS_0675 PF12705 PD-(D/E)XK nuclease superfamily VS_0676 PF13538 UvrD-like helicase C-terminal domain VS_0680 PF06725 3D domain VS_0680 PF03562 MltA specific insert domain VS_0681 PF00899 ThiF family VS_0682 PF02657 Fe-S metabolism associated domain VS_0683 PF00266 Aminotransferase class-V VS_0684 PF02558 Ketopantoate reductase PanE/ApbA VS_0684 PF08546 Ketopantoate reductase PanE/ApbA C terminal VS_0685 PF03502 Nucleoside-specific channel-forming protein, Tsx VS_0688 PF07690 Major Facilitator Superfamily VS_0689 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_0692 PF01722 BolA-like protein VS_0694 PF03116 NQR2, RnfD, RnfE family VS_0695 PF04205 FMN-binding domain VS_0698 PF00970 Oxidoreductase FAD-binding domain VS_0698 PF00175 Oxidoreductase NAD-binding domain VS_0698 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_0699 PF02424 ApbE family VS_0700 PF04400 (Na+)-NQR maturation NqrM VS_0701 PF00072 Response regulator receiver domain VS_0701 PF00990 Diguanylate cyclase, GGDEF domain VS_0702 PF11798 IMS family HHH motif VS_0702 PF11799 impB/mucB/samB family C-terminal domain VS_0702 PF00817 impB/mucB/samB family VS_0703 PF00570 HRDC domain VS_0703 PF00270 DEAD/DEAH box helicase VS_0703 PF09382 RQC domain VS_0703 PF16124 RecQ zinc-binding VS_0703 PF00271 Helicase conserved C-terminal domain VS_0704 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_0704 PF03449 Transcription elongation factor, N-terminal VS_0706 PF00209 Sodium:neurotransmitter symporter family VS_0709 PF04359 Protein of unknown function (DUF493) VS_0710 PF07943 Penicillin-binding protein 5, C-terminal domain VS_0710 PF00768 D-alanyl-D-alanine carboxypeptidase VS_0711 PF05036 Sporulation related domain VS_0711 PF03330 Lytic transglycolase VS_0712 PF01098 Cell cycle protein VS_0713 PF00905 Penicillin binding protein transpeptidase domain VS_0713 PF03717 Penicillin-binding Protein dimerisation domain VS_0716 PF06144 DNA polymerase III, delta subunit VS_0716 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VS_0717 PF04390 Lipopolysaccharide-assembly VS_0719 PF07295 Zinc-ribbon containing domain VS_0720 PF00795 Carbon-nitrogen hydrolase VS_0721 PF00571 CBS domain VS_0721 PF03471 Transporter associated domain VS_0723 PF02562 PhoH-like protein VS_0724 PF04055 Radical SAM superfamily VS_0724 PF00919 Uncharacterized protein family UPF0004 VS_0724 PF01938 TRAM domain VS_0725 PF01494 FAD binding domain VS_0726 PF10282 Lactonase, 7-bladed beta-propeller VS_0746 PF06071 Protein of unknown function (DUF933) VS_0746 PF01926 50S ribosome-binding GTPase VS_0748 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VS_0748 PF14572 Phosphoribosyl synthetase-associated domain VS_0753 PF17827 PrmC N-terminal domain VS_0753 PF13847 Methyltransferase domain VS_0754 PF04247 Invasion gene expression up-regulator, SirB VS_0755 PF13369 Transglutaminase-like superfamily VS_0757 PF02872 5'-nucleotidase, C-terminal domain VS_0757 PF00149 Calcineurin-like phosphoesterase VS_0758 PF04073 Aminoacyl-tRNA editing domain VS_0759 PF00849 RNA pseudouridylate synthase VS_0759 PF01479 S4 domain VS_0760 PF01713 Smr domain VS_0765 PF03173 Putative carbohydrate binding domain VS_0765 PF02838 Glycosyl hydrolase family 20, domain 2 VS_0765 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_0765 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VS_0768 PF00403 Heavy-metal-associated domain VS_0769 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_0770 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0770 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0773 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0773 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0779 PF00221 Aromatic amino acid lyase VS_0780 PF00535 Glycosyl transferase family 2 VS_0782 PF13193 AMP-binding enzyme C-terminal domain VS_0782 PF00501 AMP-binding enzyme VS_0784 PF00550 Phosphopantetheine attachment site VS_0785 PF00550 Phosphopantetheine attachment site VS_0790 PF04820 Tryptophan halogenase VS_0798 PF13144 Chaperone for flagella basal body P-ring formation VS_0799 PF01584 CheW-like domain VS_0799 PF00072 Response regulator receiver domain VS_0800 PF01739 CheR methyltransferase, SAM binding domain VS_0800 PF03705 CheR methyltransferase, all-alpha domain VS_0801 PF00460 Flagella basal body rod protein VS_0802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0802 PF00460 Flagella basal body rod protein VS_0803 PF13861 FlgD Tudor-like domain VS_0803 PF13860 FlgD Ig-like domain VS_0803 PF03963 Flagellar hook capping protein - N-terminal region VS_0804 PF00460 Flagella basal body rod protein VS_0804 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0804 PF07559 Flagellar basal body protein FlaE VS_0805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0805 PF00460 Flagella basal body rod protein VS_0806 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0806 PF00460 Flagella basal body rod protein VS_0809 PF10135 Rod binding protein VS_0809 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VS_0810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0810 PF07196 Flagellin hook IN motif VS_0812 PF07196 Flagellin hook IN motif VS_0812 PF00669 Bacterial flagellin N-terminal helical region VS_0812 PF00700 Bacterial flagellin C-terminal helical region VS_0813 PF00700 Bacterial flagellin C-terminal helical region VS_0813 PF07196 Flagellin hook IN motif VS_0813 PF00669 Bacterial flagellin N-terminal helical region VS_0814 PF00700 Bacterial flagellin C-terminal helical region VS_0814 PF07196 Flagellin hook IN motif VS_0814 PF00669 Bacterial flagellin N-terminal helical region VS_0815 PF03646 FlaG protein VS_0816 PF02465 Flagellar hook-associated protein 2 N-terminus VS_0816 PF07195 Flagellar hook-associated protein 2 C-terminus VS_0816 PF07196 Flagellin hook IN motif VS_0818 PF02561 Flagellar protein FliS VS_0819 PF00158 Sigma-54 interaction domain VS_0819 PF00072 Response regulator receiver domain VS_0819 PF02954 Bacterial regulatory protein, Fis family VS_0820 PF00512 His Kinase A (phospho-acceptor) domain VS_0820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0821 PF00158 Sigma-54 interaction domain VS_0821 PF00072 Response regulator receiver domain VS_0821 PF02954 Bacterial regulatory protein, Fis family VS_0822 PF02049 Flagellar hook-basal body complex protein FliE VS_0823 PF08345 Flagellar M-ring protein C-terminal VS_0823 PF01514 Secretory protein of YscJ/FliF family VS_0824 PF01706 FliG C-terminal domain VS_0824 PF14841 FliG middle domain VS_0824 PF14842 FliG N-terminal domain VS_0826 PF18269 T3SS EscN ATPase C-terminal domain VS_0826 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_0830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VS_0830 PF02154 Flagellar motor switch protein FliM VS_0831 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VS_0832 PF04347 Flagellar biosynthesis protein, FliO VS_0833 PF00813 FliP family VS_0834 PF01313 Bacterial export proteins, family 3 VS_0835 PF01311 Bacterial export proteins, family 1 VS_0836 PF01312 FlhB HrpN YscU SpaS Family VS_0837 PF00771 FHIPEP family VS_0838 PF00448 SRP54-type protein, GTPase domain VS_0839 PF10609 NUBPL iron-transfer P-loop NTPase VS_0840 PF04542 Sigma-70 region 2 VS_0840 PF04539 Sigma-70 region 3 VS_0840 PF04545 Sigma-70, region 4 VS_0841 PF00072 Response regulator receiver domain VS_0842 PF04344 Chemotaxis phosphatase, CheZ VS_0843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0843 PF02895 Signal transducing histidine kinase, homodimeric domain VS_0843 PF01584 CheW-like domain VS_0843 PF01627 Hpt domain VS_0843 PF07194 P2 response regulator binding domain VS_0844 PF00072 Response regulator receiver domain VS_0844 PF01339 CheB methylesterase VS_0845 PF13614 AAA domain VS_0847 PF01584 CheW-like domain VS_0849 PF00005 ABC transporter VS_0850 PF03379 CcmB protein VS_0852 PF01578 Cytochrome C assembly protein VS_0853 PF04995 Heme exporter protein D (CcmD) VS_0855 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VS_0855 PF01578 Cytochrome C assembly protein VS_0856 PF08534 Redoxin VS_0857 PF03918 Cytochrome C biogenesis protein VS_0858 PF03918 Cytochrome C biogenesis protein VS_0859 PF04333 MlaA lipoprotein VS_0860 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_0861 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_0863 PF08281 Sigma-70, region 4 VS_0863 PF04542 Sigma-70 region 2 VS_0864 PF02803 Thiolase, C-terminal domain VS_0864 PF00108 Thiolase, N-terminal domain VS_0865 PF00378 Enoyl-CoA hydratase/isomerase VS_0865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_0865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_0866 PF00675 Insulinase (Peptidase family M16) VS_0866 PF16187 Middle or third domain of peptidase_M16 VS_0866 PF05193 Peptidase M16 inactive domain VS_0867 PF00300 Histidine phosphatase superfamily (branch 1) VS_0868 PF01713 Smr domain VS_0869 PF05175 Methyltransferase small domain VS_0870 PF01810 LysE type translocator VS_0873 PF00072 Response regulator receiver domain VS_0873 PF00486 Transcriptional regulatory protein, C terminal VS_0874 PF00512 His Kinase A (phospho-acceptor) domain VS_0874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0874 PF00672 HAMP domain VS_0875 PF01547 Bacterial extracellular solute-binding protein VS_0877 PF00528 Binding-protein-dependent transport system inner membrane component VS_0878 PF03459 TOBE domain VS_0878 PF17912 MalK OB fold domain VS_0878 PF00005 ABC transporter VS_0880 PF01926 50S ribosome-binding GTPase VS_0880 PF16360 GTP-binding GTPase Middle Region VS_0880 PF13167 GTP-binding GTPase N-terminal VS_0881 PF03776 Septum formation topological specificity factor MinE VS_0882 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_0885 PF13406 Transglycosylase SLT domain VS_0886 PF03466 LysR substrate binding domain VS_0886 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0887 PF07662 Na+ dependent nucleoside transporter C-terminus VS_0887 PF01773 Na+ dependent nucleoside transporter N-terminus VS_0887 PF07670 Nucleoside recognition VS_0892 PF01264 Chorismate synthase VS_0893 PF03458 UPF0126 domain VS_0894 PF04315 Elongation factor P hydroxylase VS_0895 PF08891 YfcL protein VS_0896 PF03358 NADPH-dependent FMN reductase VS_0897 PF01266 FAD dependent oxidoreductase VS_0897 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VS_0898 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0898 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0901 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_0901 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_0904 PF01039 Carboxyl transferase domain VS_0904 PF17848 Acetyl-coA carboxylase zinc finger domain VS_0905 PF02875 Mur ligase family, glutamate ligase domain VS_0905 PF08245 Mur ligase middle domain VS_0906 PF05036 Sporulation related domain VS_0907 PF02674 Colicin V production protein VS_0908 PF00156 Phosphoribosyl transferase domain VS_0909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0909 PF03466 LysR substrate binding domain VS_0910 PF00072 Response regulator receiver domain VS_0913 PF04304 Protein of unknown function (DUF454) VS_0915 PF12169 DNA polymerase III subunits gamma and tau domain III VS_0915 PF12170 DNA polymerase III tau subunit V interacting with alpha VS_0915 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VS_0919 PF00230 Major intrinsic protein VS_0922 PF03692 Putative zinc- or iron-chelating domain VS_0924 PF00245 Alkaline phosphatase VS_0925 PF02028 BCCT, betaine/carnitine/choline family transporter VS_0928 PF13847 Methyltransferase domain VS_0929 PF08447 PAS fold VS_0929 PF13426 PAS domain VS_0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0931 PF01263 Aldose 1-epimerase VS_0932 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_0932 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_0933 PF01641 SelR domain VS_0935 PF07023 Protein of unknown function (DUF1315) VS_0936 PF17763 Glutaminase/Asparaginase C-terminal domain VS_0936 PF00710 Asparaginase, N-terminal VS_0937 PF01343 Peptidase family S49 VS_0938 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0938 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_0939 PF00881 Nitroreductase family VS_0940 PF01131 DNA topoisomerase VS_0940 PF01751 Toprim domain VS_0942 PF00106 short chain dehydrogenase VS_0943 PF00850 Histone deacetylase domain VS_0945 PF02082 Transcriptional regulator VS_0949 PF11893 Domain of unknown function (DUF3413) VS_0949 PF00884 Sulfatase VS_0954 PF03553 Na+/H+ antiporter family VS_0955 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_0955 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_0956 PF00520 Ion transport protein VS_0956 PF00027 Cyclic nucleotide-binding domain VS_0957 PF01914 MarC family integral membrane protein VS_0958 PF00171 Aldehyde dehydrogenase family VS_0958 PF00465 Iron-containing alcohol dehydrogenase VS_0961 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_0961 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_0962 PF00462 Glutaredoxin VS_0964 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_0964 PF00672 HAMP domain VS_0964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0964 PF00512 His Kinase A (phospho-acceptor) domain VS_0964 PF01627 Hpt domain VS_0964 PF00072 Response regulator receiver domain VS_0966 PF13726 Na+-H+ antiporter family VS_0966 PF03553 Na+/H+ antiporter family VS_0967 PF00929 Exonuclease VS_0968 PF18393 MotY N-terminal domain VS_0968 PF00691 OmpA family VS_0969 PF10952 Protein of unknown function (DUF2753) VS_0970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_0971 PF00633 Helix-hairpin-helix motif VS_0971 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_0971 PF10576 Iron-sulfur binding domain of endonuclease III VS_0975 PF13375 RnfC Barrel sandwich hybrid domain VS_0975 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VS_0975 PF10531 SLBB domain VS_0975 PF12838 4Fe-4S dicluster domain VS_0976 PF10531 SLBB domain VS_0976 PF13375 RnfC Barrel sandwich hybrid domain VS_0976 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VS_0976 PF12838 4Fe-4S dicluster domain VS_0980 PF04851 Type III restriction enzyme, res subunit VS_0980 PF17757 UvrB interaction domain VS_0980 PF02151 UvrB/uvrC motif VS_0980 PF12344 Ultra-violet resistance protein B VS_0980 PF00271 Helicase conserved C-terminal domain VS_0982 PF00158 Sigma-54 interaction domain VS_0982 PF02954 Bacterial regulatory protein, Fis family VS_0982 PF00072 Response regulator receiver domain VS_0983 PF01627 Hpt domain VS_0984 PF01933 Uncharacterised protein family UPF0052 VS_0986 PF00994 Probable molybdopterin binding domain VS_0988 PF02597 ThiS family VS_0989 PF02391 MoaE protein VS_0990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_0991 PF00528 Binding-protein-dependent transport system inner membrane component VS_0992 PF00528 Binding-protein-dependent transport system inner membrane component VS_0992 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_0993 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0993 PF00005 ABC transporter VS_0994 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0994 PF00005 ABC transporter VS_0995 PF13409 Glutathione S-transferase, N-terminal domain VS_0996 PF00563 EAL domain VS_0996 PF00990 Diguanylate cyclase, GGDEF domain VS_0996 PF03707 Bacterial signalling protein N terminal repeat VS_0997 PF01515 Phosphate acetyl/butaryl transferase VS_0997 PF07085 DRTGG domain VS_0998 PF00871 Acetokinase family VS_1001 PF00990 Diguanylate cyclase, GGDEF domain VS_1002 PF01207 Dihydrouridine synthase (Dus) VS_1003 PF00114 Pilin (bacterial filament) VS_1003 PF07963 Prokaryotic N-terminal methylation motif VS_1004 PF02810 SEC-C motif VS_1004 PF07517 SecA DEAD-like domain VS_1004 PF01043 SecA preprotein cross-linking domain VS_1004 PF07516 SecA Wing and Scaffold domain VS_1005 PF02600 Disulfide bond formation protein DsbB VS_1007 PF07840 FadR C-terminal domain VS_1007 PF00392 Bacterial regulatory proteins, gntR family VS_1010 PF10609 NUBPL iron-transfer P-loop NTPase VS_1012 PF05170 AsmA family VS_1013 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VS_1013 PF12557 Cob(I)alamin adenosyltransferase N terminal VS_1014 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_1015 PF01740 STAS domain VS_1015 PF00916 Sulfate permease family VS_1016 PF00575 S1 RNA binding domain VS_1016 PF10150 Ribonuclease E/G family VS_1016 PF12111 Polyribonucleotide phosphorylase C terminal VS_1017 PF01479 S4 domain VS_1017 PF00849 RNA pseudouridylate synthase VS_1018 PF02545 Maf-like protein VS_1019 PF02620 Large ribosomal RNA subunit accumulation protein YceD VS_1022 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VS_1022 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VS_1023 PF00698 Acyl transferase domain VS_1025 PF00550 Phosphopantetheine attachment site VS_1026 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_1026 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_1027 PF01063 Amino-transferase class IV VS_1028 PF02618 YceG-like family VS_1029 PF02223 Thymidylate kinase VS_1030 PF09115 DNA polymerase III, delta subunit, C terminal VS_1031 PF01026 TatD related DNase VS_1032 PF00367 phosphotransferase system, EIIB VS_1032 PF02378 Phosphotransferase system, EIIC VS_1034 PF00209 Sodium:neurotransmitter symporter family VS_1036 PF01734 Patatin-like phospholipase VS_1037 PF02887 Pyruvate kinase, alpha/beta domain VS_1037 PF00224 Pyruvate kinase, barrel domain VS_1038 PF00480 ROK family VS_1039 PF01584 CheW-like domain VS_1039 PF00072 Response regulator receiver domain VS_1040 PF01336 OB-fold nucleic acid binding domain VS_1040 PF02811 PHP domain VS_1040 PF14579 Helix-hairpin-helix motif VS_1040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_1040 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_1042 PF00154 recA bacterial DNA recombination protein VS_1043 PF00106 short chain dehydrogenase VS_1044 PF01343 Peptidase family S49 VS_1044 PF08496 Peptidase family S49 N-terminal VS_1045 PF04293 SpoVR like protein VS_1046 PF04285 Protein of unknown function (DUF444) VS_1047 PF06798 PrkA serine protein kinase C-terminal domain VS_1047 PF08298 PrkA AAA domain VS_1048 PF06629 MltA-interacting protein MipA VS_1050 PF04055 Radical SAM superfamily VS_1052 PF01228 Glycine radical VS_1052 PF02901 Pyruvate formate lyase-like VS_1054 PF00005 ABC transporter VS_1055 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1056 PF00528 Binding-protein-dependent transport system inner membrane component VS_1057 PF00528 Binding-protein-dependent transport system inner membrane component VS_1059 PF03372 Endonuclease/Exonuclease/phosphatase family VS_1060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_1060 PF00326 Prolyl oligopeptidase family VS_1061 PF07690 Major Facilitator Superfamily VS_1062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1062 PF00672 HAMP domain VS_1062 PF02743 Cache domain VS_1063 PF08007 Cupin superfamily protein VS_1064 PF10689 Protein of unknown function (DUF2496) VS_1066 PF01925 Sulfite exporter TauE/SafE VS_1067 PF06733 DEAD_2 VS_1067 PF13307 Helicase C-terminal domain VS_1069 PF00849 RNA pseudouridylate synthase VS_1071 PF03971 Monomeric isocitrate dehydrogenase VS_1072 PF00313 'Cold-shock' DNA-binding domain VS_1074 PF00004 ATPase family associated with various cellular activities (AAA) VS_1074 PF17871 AAA lid domain VS_1074 PF07724 AAA domain (Cdc48 subfamily) VS_1074 PF02861 Clp amino terminal domain, pathogenicity island component VS_1074 PF10431 C-terminal, D2-small domain, of ClpB protein VS_1075 PF01176 Translation initiation factor 1A / IF-1 VS_1076 PF04377 Arginine-tRNA-protein transferase, C terminus VS_1076 PF04376 Arginine-tRNA-protein transferase, N terminus VS_1080 PF10692 Protein of unknown function (DUF2498) VS_1081 PF08272 Topoisomerase I zinc-ribbon-like VS_1081 PF01131 DNA topoisomerase VS_1081 PF01396 Topoisomerase DNA binding C4 zinc finger VS_1081 PF01751 Toprim domain VS_1082 PF00483 Nucleotidyl transferase VS_1087 PF04994 TfoX C-terminal domain VS_1087 PF04993 TfoX N-terminal domain VS_1091 PF00486 Transcriptional regulatory protein, C terminal VS_1091 PF00072 Response regulator receiver domain VS_1092 PF02698 DUF218 domain VS_1095 PF04288 MukE-like family VS_1096 PF16330 MukB hinge domain VS_1096 PF04310 MukB N-terminal VS_1097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1097 PF00672 HAMP domain VS_1097 PF02743 Cache domain VS_1100 PF18030 RimK PreATP-grasp domain VS_1100 PF08443 RimK-like ATP-grasp domain VS_1103 PF01904 Protein of unknown function DUF72 VS_1106 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1106 PF00672 HAMP domain VS_1106 PF02203 Tar ligand binding domain homologue VS_1109 PF01654 Cytochrome bd terminal oxidase subunit I VS_1110 PF02322 Cytochrome bd terminal oxidase subunit II VS_1112 PF03061 Thioesterase superfamily VS_1113 PF01618 MotA/TolQ/ExbB proton channel family VS_1114 PF02472 Biopolymer transport protein ExbD/TolR VS_1117 PF00691 OmpA family VS_1118 PF13174 Tetratricopeptide repeat VS_1118 PF16331 TolA binding protein trimerisation VS_1119 PF02445 Quinolinate synthetase A protein VS_1121 PF07715 TonB-dependent Receptor Plug Domain VS_1122 PF08021 Siderophore-interacting FAD-binding domain VS_1122 PF04954 Siderophore-interacting protein VS_1123 PF01497 Periplasmic binding protein VS_1124 PF01032 FecCD transport family VS_1125 PF01032 FecCD transport family VS_1126 PF00005 ABC transporter VS_1129 PF00512 His Kinase A (phospho-acceptor) domain VS_1129 PF09308 LuxQ, periplasmic VS_1129 PF00072 Response regulator receiver domain VS_1129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1130 PF06610 L-alanine exporter VS_1132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1132 PF03466 LysR substrate binding domain VS_1137 PF00072 Response regulator receiver domain VS_1137 PF00486 Transcriptional regulatory protein, C terminal VS_1138 PF00535 Glycosyl transferase family 2 VS_1139 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VS_1141 PF08497 Radical SAM N-terminal VS_1141 PF04055 Radical SAM superfamily VS_1141 PF11842 Domain of unknown function (DUF3362) VS_1144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1144 PF03466 LysR substrate binding domain VS_1145 PF08267 Cobalamin-independent synthase, N-terminal domain VS_1145 PF01717 Cobalamin-independent synthase, Catalytic domain VS_1147 PF03795 YCII-related domain VS_1148 PF03061 Thioesterase superfamily VS_1151 PF03466 LysR substrate binding domain VS_1151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1152 PF00155 Aminotransferase class I and II VS_1153 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1155 PF01627 Hpt domain VS_1155 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_1155 PF00072 Response regulator receiver domain VS_1155 PF00672 HAMP domain VS_1155 PF00512 His Kinase A (phospho-acceptor) domain VS_1156 PF00990 Diguanylate cyclase, GGDEF domain VS_1156 PF01590 GAF domain VS_1156 PF00563 EAL domain VS_1156 PF00360 Phytochrome region VS_1157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1157 PF00672 HAMP domain VS_1161 PF01066 CDP-alcohol phosphatidyltransferase VS_1162 PF00005 ABC transporter VS_1163 PF00528 Binding-protein-dependent transport system inner membrane component VS_1164 PF13416 Bacterial extracellular solute-binding protein VS_1166 PF06945 Protein of unknown function (DUF1289) VS_1172 PF00271 Helicase conserved C-terminal domain VS_1172 PF00270 DEAD/DEAH box helicase VS_1173 PF01810 LysE type translocator VS_1175 PF00246 Zinc carboxypeptidase VS_1175 PF18027 Cytosolic carboxypeptidase N-terminal domain VS_1179 PF00571 CBS domain VS_1179 PF00005 ABC transporter VS_1180 PF00528 Binding-protein-dependent transport system inner membrane component VS_1181 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_1183 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1183 PF03466 LysR substrate binding domain VS_1184 PF00005 ABC transporter VS_1184 PF00664 ABC transporter transmembrane region VS_1185 PF00005 ABC transporter VS_1185 PF00664 ABC transporter transmembrane region VS_1186 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_1192 PF00266 Aminotransferase class-V VS_1194 PF03466 LysR substrate binding domain VS_1194 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1195 PF00990 Diguanylate cyclase, GGDEF domain VS_1195 PF08448 PAS fold VS_1197 PF00072 Response regulator receiver domain VS_1197 PF00990 Diguanylate cyclase, GGDEF domain VS_1198 PF06942 GlpM protein VS_1199 PF00939 Sodium:sulfate symporter transmembrane region VS_1201 PF02698 DUF218 domain VS_1202 PF03949 Malic enzyme, NAD binding domain VS_1202 PF00390 Malic enzyme, N-terminal domain VS_1203 PF00271 Helicase conserved C-terminal domain VS_1203 PF04408 Helicase associated domain (HA2) VS_1203 PF08482 ATP-dependent helicase C-terminal VS_1203 PF00270 DEAD/DEAH box helicase VS_1209 PF00691 OmpA family VS_1212 PF13183 4Fe-4S dicluster domain VS_1212 PF01565 FAD binding domain VS_1212 PF02913 FAD linked oxidases, C-terminal domain VS_1213 PF04191 Phospholipid methyltransferase VS_1216 PF00221 Aromatic amino acid lyase VS_1218 PF00491 Arginase family VS_1219 PF01979 Amidohydrolase family VS_1220 PF07702 UTRA domain VS_1220 PF00392 Bacterial regulatory proteins, gntR family VS_1221 PF07070 SpoOM protein VS_1228 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_1228 PF03129 Anticodon binding domain VS_1228 PF02824 TGS domain VS_1228 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_1229 PF05198 Translation initiation factor IF-3, N-terminal domain VS_1229 PF00707 Translation initiation factor IF-3, C-terminal domain VS_1235 PF16326 ABC transporter C-terminal domain VS_1235 PF00005 ABC transporter VS_1235 PF12848 ABC transporter VS_1236 PF17932 Tetracyclin repressor-like, C-terminal domain VS_1236 PF00440 Bacterial regulatory proteins, tetR family VS_1237 PF00171 Aldehyde dehydrogenase family VS_1238 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_1238 PF17944 Arginine decarboxylase C-terminal helical extension VS_1238 PF17810 Arginine decarboxylase helical bundle domain VS_1239 PF00491 Arginase family VS_1241 PF00474 Sodium:solute symporter family VS_1242 PF01081 KDPG and KHG aldolase VS_1243 PF00294 pfkB family carbohydrate kinase VS_1244 PF07883 Cupin domain VS_1246 PF05426 Alginate lyase VS_1246 PF07940 Heparinase II/III-like protein VS_1247 PF07940 Heparinase II/III-like protein VS_1247 PF05426 Alginate lyase VS_1248 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_1248 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VS_1250 PF07729 FCD domain VS_1250 PF00392 Bacterial regulatory proteins, gntR family VS_1251 PF07729 FCD domain VS_1251 PF00392 Bacterial regulatory proteins, gntR family VS_1252 PF00571 CBS domain VS_1253 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_1253 PF00929 Exonuclease VS_1253 PF02811 PHP domain VS_1253 PF14579 Helix-hairpin-helix motif VS_1253 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_1253 PF11490 DNA polymerase III polC-type N-terminus II VS_1257 PF00474 Sodium:solute symporter family VS_1259 PF01641 SelR domain VS_1259 PF01625 Peptide methionine sulfoxide reductase VS_1262 PF01212 Beta-eliminating lyase VS_1263 PF03466 LysR substrate binding domain VS_1263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1267 PF04151 Bacterial pre-peptidase C-terminal domain VS_1267 PF01447 Thermolysin metallopeptidase, catalytic domain VS_1267 PF03413 Peptidase propeptide and YPEB domain VS_1267 PF07504 Fungalysin/Thermolysin Propeptide Motif VS_1267 PF02868 Thermolysin metallopeptidase, alpha-helical domain VS_1274 PF00939 Sodium:sulfate symporter transmembrane region VS_1275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1275 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1275 PF00512 His Kinase A (phospho-acceptor) domain VS_1276 PF00072 Response regulator receiver domain VS_1276 PF00158 Sigma-54 interaction domain VS_1276 PF02954 Bacterial regulatory protein, Fis family VS_1280 PF00583 Acetyltransferase (GNAT) family VS_1282 PF01717 Cobalamin-independent synthase, Catalytic domain VS_1282 PF08267 Cobalamin-independent synthase, N-terminal domain VS_1284 PF01925 Sulfite exporter TauE/SafE VS_1289 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VS_1290 PF01810 LysE type translocator VS_1291 PF01235 Sodium:alanine symporter family VS_1296 PF01235 Sodium:alanine symporter family VS_1299 PF13533 Biotin-lipoyl like VS_1302 PF17203 Single cache domain 3 VS_1302 PF00989 PAS fold VS_1302 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VS_1302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1303 PF00072 Response regulator receiver domain VS_1303 PF12431 Transcriptional regulator VS_1304 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VS_1304 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VS_1305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VS_1306 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VS_1306 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_1307 PF00072 Response regulator receiver domain VS_1308 PF09905 DNA-binding protein VF530 VS_1311 PF01970 Tripartite tricarboxylate transporter TctA family VS_1315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_1315 PF00072 Response regulator receiver domain VS_1315 PF00672 HAMP domain VS_1315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1315 PF01627 Hpt domain VS_1315 PF00512 His Kinase A (phospho-acceptor) domain VS_1316 PF00072 Response regulator receiver domain VS_1317 PF00069 Protein kinase domain VS_1317 PF03793 PASTA domain VS_1326 PF17871 AAA lid domain VS_1326 PF07724 AAA domain (Cdc48 subfamily) VS_1326 PF10431 C-terminal, D2-small domain, of ClpB protein VS_1326 PF00004 ATPase family associated with various cellular activities (AAA) VS_1337 PF16671 Actin cross-linking domain VS_1337 PF04717 Type VI secretion system, phage-baseplate injector VS_1338 PF16671 Actin cross-linking domain VS_1338 PF04717 Type VI secretion system, phage-baseplate injector VS_1344 PF00285 Citrate synthase, C-terminal domain VS_1345 PF00694 Aconitase C-terminal domain VS_1345 PF00330 Aconitase family (aconitate hydratase) VS_1346 PF04303 PrpF protein VS_1347 PF00501 AMP-binding enzyme VS_1347 PF13193 AMP-binding enzyme C-terminal domain VS_1347 PF16177 Acetyl-coenzyme A synthetase N-terminus VS_1353 PF04055 Radical SAM superfamily VS_1354 PF06508 Queuosine biosynthesis protein QueC VS_1355 PF06508 Queuosine biosynthesis protein QueC VS_1362 PF00226 DnaJ domain VS_1362 PF00684 DnaJ central domain VS_1362 PF01556 DnaJ C terminal domain VS_1376 PF08463 EcoEI R protein C-terminal VS_1376 PF04851 Type III restriction enzyme, res subunit VS_1376 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VS_1376 PF00271 Helicase conserved C-terminal domain VS_1377 PF02384 N-6 DNA Methylase VS_1378 PF02384 N-6 DNA Methylase VS_1379 PF01420 Type I restriction modification DNA specificity domain VS_1381 PF12102 Domain of unknown function (DUF3578) VS_1381 PF07728 AAA domain (dynein-related subfamily) VS_1390 PF17151 Periplasmic sensor domain VS_1390 PF00990 Diguanylate cyclase, GGDEF domain VS_1392 PF05736 OprF membrane domain VS_1392 PF00691 OmpA family VS_1395 PF10672 S-adenosylmethionine-dependent methyltransferase VS_1395 PF17785 PUA-like domain VS_1396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1396 PF00672 HAMP domain VS_1396 PF17200 Single Cache domain 2 VS_1397 PF00708 Acylphosphatase VS_1398 PF04358 DsrC like protein VS_1399 PF01027 Inhibitor of apoptosis-promoting Bax1 VS_1400 PF00005 ABC transporter VS_1401 PF00528 Binding-protein-dependent transport system inner membrane component VS_1402 PF00528 Binding-protein-dependent transport system inner membrane component VS_1403 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1404 PF10414 Sirohaem synthase dimerisation region VS_1404 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_1404 PF14824 Sirohaem biosynthesis protein central VS_1406 PF00793 DAHP synthetase I family VS_1407 PF02896 PEP-utilising enzyme, TIM barrel domain VS_1407 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VS_1407 PF00391 PEP-utilising enzyme, mobile domain VS_1410 PF13509 S1 domain VS_1410 PF17783 CvfB-like winged helix domain VS_1412 PF02470 MlaD protein VS_1413 PF04403 Paraquat-inducible protein A VS_1414 PF00664 ABC transporter transmembrane region VS_1414 PF00005 ABC transporter VS_1415 PF13185 GAF domain VS_1417 PF17804 Tail specific protease N-terminal domain VS_1417 PF03572 Peptidase family S41 VS_1417 PF00595 PDZ domain VS_1417 PF11818 C-terminal domain of tail specific protease (DUF3340) VS_1419 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VS_1419 PF11940 Domain of unknown function (DUF3458) Ig-like fold VS_1419 PF01433 Peptidase family M1 domain VS_1421 PF05088 Bacterial NAD-glutamate dehydrogenase VS_1423 PF07126 Cell-division protein ZapC VS_1424 PF01170 Putative RNA methylase family UPF0020 VS_1424 PF02926 THUMP domain VS_1424 PF10672 S-adenosylmethionine-dependent methyltransferase VS_1428 PF04957 Ribosome modulation factor VS_1429 PF07977 FabA-like domain VS_1430 PF13654 AAA domain VS_1430 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_1445 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VS_1456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1456 PF00072 Response regulator receiver domain VS_1456 PF00512 His Kinase A (phospho-acceptor) domain VS_1456 PF09308 LuxQ, periplasmic VS_1459 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_1462 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VS_1462 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_1464 PF00403 Heavy-metal-associated domain VS_1467 PF00027 Cyclic nucleotide-binding domain VS_1467 PF13545 Crp-like helix-turn-helix domain VS_1468 PF00582 Universal stress protein family VS_1469 PF01171 PP-loop family VS_1474 PF08402 TOBE domain VS_1474 PF00005 ABC transporter VS_1475 PF00528 Binding-protein-dependent transport system inner membrane component VS_1476 PF00528 Binding-protein-dependent transport system inner membrane component VS_1477 PF13416 Bacterial extracellular solute-binding protein VS_1478 PF13416 Bacterial extracellular solute-binding protein VS_1480 PF02146 Sir2 family VS_1481 PF00909 Ammonium Transporter Family VS_1484 PF13247 4Fe-4S dicluster domain VS_1485 PF00384 Molybdopterin oxidoreductase VS_1485 PF01568 Molydopterin dinucleotide binding domain VS_1485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_1487 PF02613 Nitrate reductase delta subunit VS_1492 PF02634 FdhD/NarQ family VS_1493 PF00005 ABC transporter VS_1493 PF12848 ABC transporter VS_1494 PF12848 ABC transporter VS_1494 PF00005 ABC transporter VS_1497 PF00512 His Kinase A (phospho-acceptor) domain VS_1497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1498 PF00158 Sigma-54 interaction domain VS_1498 PF00072 Response regulator receiver domain VS_1498 PF02954 Bacterial regulatory protein, Fis family VS_1499 PF12849 PBP superfamily domain VS_1500 PF00528 Binding-protein-dependent transport system inner membrane component VS_1501 PF08402 TOBE domain VS_1501 PF00005 ABC transporter VS_1503 PF03454 MoeA C-terminal region (domain IV) VS_1503 PF03453 MoeA N-terminal region (domain I and II) VS_1503 PF00994 Probable molybdopterin binding domain VS_1504 PF00990 Diguanylate cyclase, GGDEF domain VS_1510 PF02743 Cache domain VS_1510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1510 PF00672 HAMP domain VS_1511 PF00877 NlpC/P60 family VS_1516 PF00677 Lumazine binding domain VS_1517 PF01554 MatE VS_1518 PF14743 DNA ligase OB-like domain VS_1518 PF01068 ATP dependent DNA ligase domain VS_1520 PF00691 OmpA family VS_1520 PF01389 OmpA-like transmembrane domain VS_1524 PF00528 Binding-protein-dependent transport system inner membrane component VS_1525 PF00571 CBS domain VS_1525 PF00005 ABC transporter VS_1527 PF00072 Response regulator receiver domain VS_1527 PF00158 Sigma-54 interaction domain VS_1527 PF02954 Bacterial regulatory protein, Fis family VS_1528 PF13439 Glycosyltransferase Family 4 VS_1528 PF00534 Glycosyl transferases group 1 VS_1533 PF13439 Glycosyltransferase Family 4 VS_1533 PF00534 Glycosyl transferases group 1 VS_1535 PF02397 Bacterial sugar transferase VS_1536 PF00672 HAMP domain VS_1536 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1536 PF17200 Single Cache domain 2 VS_1537 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1537 PF03466 LysR substrate binding domain VS_1540 PF00873 AcrB/AcrD/AcrF family VS_1541 PF02321 Outer membrane efflux protein VS_1550 PF13419 Haloacid dehalogenase-like hydrolase VS_1558 PF02540 NAD synthase VS_1558 PF00795 Carbon-nitrogen hydrolase VS_1559 PF04986 Putative transposase VS_1559 PF14319 Transposase zinc-binding domain VS_1561 PF00528 Binding-protein-dependent transport system inner membrane component VS_1562 PF00528 Binding-protein-dependent transport system inner membrane component VS_1563 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1564 PF00005 ABC transporter VS_1565 PF00005 ABC transporter VS_1565 PF00664 ABC transporter transmembrane region VS_1567 PF01136 Peptidase family U32 VS_1567 PF12392 Collagenase VS_1570 PF03616 Sodium/glutamate symporter VS_1576 PF00132 Bacterial transferase hexapeptide (six repeats) VS_1579 PF13419 Haloacid dehalogenase-like hydrolase VS_1580 PF07517 SecA DEAD-like domain VS_1580 PF07516 SecA Wing and Scaffold domain VS_1580 PF01043 SecA preprotein cross-linking domain VS_1580 PF02810 SEC-C motif VS_1584 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_1585 PF01810 LysE type translocator VS_1590 PF00293 NUDIX domain VS_1593 PF03737 Aldolase/RraA VS_1601 PF01479 S4 domain VS_1601 PF00849 RNA pseudouridylate synthase VS_1604 PF00293 NUDIX domain VS_1609 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_1609 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_1611 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_1612 PF07690 Major Facilitator Superfamily VS_1618 PF00582 Universal stress protein family VS_1619 PF03441 FAD binding domain of DNA photolyase VS_1619 PF00875 DNA photolyase VS_1620 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VS_1625 PF13476 AAA domain VS_1626 PF12320 Type 5 capsule protein repressor C-terminal domain VS_1626 PF00149 Calcineurin-like phosphoesterase VS_1630 PF00583 Acetyltransferase (GNAT) family VS_1631 PF00990 Diguanylate cyclase, GGDEF domain VS_1633 PF07715 TonB-dependent Receptor Plug Domain VS_1633 PF00593 TonB dependent receptor VS_1634 PF03466 LysR substrate binding domain VS_1634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1636 PF00672 HAMP domain VS_1636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1636 PF12729 Four helix bundle sensory module for signal transduction VS_1638 PF01545 Cation efflux family VS_1639 PF00884 Sulfatase VS_1640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1640 PF03466 LysR substrate binding domain VS_1641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1641 PF03466 LysR substrate binding domain VS_1644 PF13091 PLD-like domain VS_1648 PF18337 RapA N-terminal Tudor like domain VS_1648 PF00271 Helicase conserved C-terminal domain VS_1648 PF18339 RapA N-terminal Tudor like domain 1 VS_1648 PF00176 SNF2 family N-terminal domain VS_1648 PF12137 RNA polymerase recycling family C-terminal VS_1649 PF00145 C-5 cytosine-specific DNA methylase VS_1650 PF13361 UvrD-like helicase C-terminal domain VS_1650 PF00580 UvrD/REP helicase N-terminal domain VS_1650 PF12462 DNA helicase IV / RNA helicase N terminal VS_1651 PF13391 HNH endonuclease VS_1653 PF00075 RNase H VS_1655 PF04002 RadC-like JAB domain VS_1669 PF13356 Arm DNA-binding domain VS_1669 PF00589 Phage integrase family VS_1673 PF05230 MASE2 domain VS_1673 PF00990 Diguanylate cyclase, GGDEF domain VS_1674 PF07687 Peptidase dimerisation domain VS_1674 PF01546 Peptidase family M20/M25/M40 VS_1679 PF05971 RNA methyltransferase VS_1680 PF01863 Protein of unknown function DUF45 VS_1682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1682 PF03466 LysR substrate binding domain VS_1683 PF07690 Major Facilitator Superfamily VS_1685 PF17151 Periplasmic sensor domain VS_1685 PF00990 Diguanylate cyclase, GGDEF domain VS_1687 PF00583 Acetyltransferase (GNAT) family VS_1689 PF02322 Cytochrome bd terminal oxidase subunit II VS_1690 PF01654 Cytochrome bd terminal oxidase subunit I VS_1691 PF00392 Bacterial regulatory proteins, gntR family VS_1691 PF00155 Aminotransferase class I and II VS_1696 PF01032 FecCD transport family VS_1697 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_1700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VS_1701 PF02654 Cobalamin-5-phosphate synthase VS_1703 PF01613 Flavin reductase like domain VS_1704 PF13460 NAD(P)H-binding VS_1707 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VS_1708 PF03372 Endonuclease/Exonuclease/phosphatase family VS_1712 PF04116 Fatty acid hydroxylase superfamily VS_1713 PF00929 Exonuclease VS_1713 PF08411 Exonuclease C-terminal VS_1714 PF03788 LrgA family VS_1715 PF04172 LrgB-like family VS_1717 PF02222 ATP-grasp domain VS_1723 PF00392 Bacterial regulatory proteins, gntR family VS_1723 PF00155 Aminotransferase class I and II VS_1724 PF00155 Aminotransferase class I and II VS_1725 PF00072 Response regulator receiver domain VS_1725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1726 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VS_1728 PF17200 Single Cache domain 2 VS_1728 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1728 PF00672 HAMP domain VS_1735 PF00216 Bacterial DNA-binding protein VS_1739 PF02001 Protein of unknown function DUF134 VS_1743 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_1744 PF01037 Lrp/AsnC ligand binding domain VS_1748 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_1749 PF02152 Dihydroneopterin aldolase VS_1750 PF01227 GTP cyclohydrolase I VS_1753 PF01734 Patatin-like phospholipase VS_1761 PF00561 alpha/beta hydrolase fold VS_1765 PF03484 tRNA synthetase B5 domain VS_1765 PF03147 Ferredoxin-fold anticodon binding domain VS_1765 PF01588 Putative tRNA binding domain VS_1765 PF03483 B3/4 domain VS_1765 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VS_1775 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VS_1775 PF04408 Helicase associated domain (HA2) VS_1775 PF11898 Domain of unknown function (DUF3418) VS_1775 PF00270 DEAD/DEAH box helicase VS_1775 PF00271 Helicase conserved C-terminal domain VS_1781 PF00486 Transcriptional regulatory protein, C terminal VS_1785 PF00990 Diguanylate cyclase, GGDEF domain VS_1787 PF00012 Hsp70 protein VS_1788 PF00012 Hsp70 protein VS_1792 PF13302 Acetyltransferase (GNAT) domain VS_1793 PF18024 Helix-turn-helix domain VS_1793 PF00158 Sigma-54 interaction domain VS_1794 PF05128 Domain of unknown function (DUF697) VS_1795 PF04317 YcjX-like family, DUF463 VS_1798 PF04715 Anthranilate synthase component I, N terminal region VS_1798 PF00425 chorismate binding enzyme VS_1800 PF00512 His Kinase A (phospho-acceptor) domain VS_1800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1800 PF00072 Response regulator receiver domain VS_1800 PF09308 LuxQ, periplasmic VS_1802 PF00293 NUDIX domain VS_1803 PF03222 Tryptophan/tyrosine permease family VS_1804 PF03313 Serine dehydratase alpha chain VS_1804 PF03315 Serine dehydratase beta chain VS_1805 PF03222 Tryptophan/tyrosine permease family VS_1806 PF01242 6-pyruvoyl tetrahydropterin synthase VS_1807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1807 PF00672 HAMP domain VS_1807 PF12729 Four helix bundle sensory module for signal transduction VS_1808 PF00916 Sulfate permease family VS_1808 PF01740 STAS domain VS_1809 PF01336 OB-fold nucleic acid binding domain VS_1809 PF00152 tRNA synthetases class II (D, K and N) VS_1814 PF00392 Bacterial regulatory proteins, gntR family VS_1814 PF00155 Aminotransferase class I and II VS_1816 PF00672 HAMP domain VS_1816 PF01966 HD domain VS_1819 PF00155 Aminotransferase class I and II VS_1822 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_1822 PF14579 Helix-hairpin-helix motif VS_1822 PF02811 PHP domain VS_1822 PF00929 Exonuclease VS_1822 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_1823 PF03473 MOSC domain VS_1823 PF03475 3-alpha domain VS_1824 PF00266 Aminotransferase class-V VS_1826 PF00512 His Kinase A (phospho-acceptor) domain VS_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1827 PF02954 Bacterial regulatory protein, Fis family VS_1827 PF00158 Sigma-54 interaction domain VS_1827 PF00072 Response regulator receiver domain VS_1829 PF04994 TfoX C-terminal domain VS_1829 PF04993 TfoX N-terminal domain VS_1831 PF03956 Lysine exporter LysO VS_1833 PF00282 Pyridoxal-dependent decarboxylase conserved domain VS_1834 PF01418 Helix-turn-helix domain, rpiR family VS_1834 PF01380 SIS domain VS_1835 PF00465 Iron-containing alcohol dehydrogenase VS_1836 PF00462 Glutaredoxin VS_1839 PF07055 Enoyl reductase FAD binding domain VS_1839 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VS_1839 PF12241 Trans-2-enoyl-CoA reductase catalytic region VS_1840 PF02770 Acyl-CoA dehydrogenase, middle domain VS_1840 PF09317 Domain of unknown function (DUF1974) VS_1840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_1840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_1841 PF00440 Bacterial regulatory proteins, tetR family VS_1841 PF16295 Tetracyclin repressor-like, C-terminal domain VS_1845 PF06965 Na+/H+ antiporter 1 VS_1848 PF00005 ABC transporter VS_1849 PF01554 MatE VS_1850 PF11066 Protein of unknown function (DUF2867) VS_1850 PF13460 NAD(P)H-binding VS_1852 PF07690 Major Facilitator Superfamily VS_1853 PF00849 RNA pseudouridylate synthase VS_1853 PF01479 S4 domain VS_1854 PF04851 Type III restriction enzyme, res subunit VS_1854 PF00271 Helicase conserved C-terminal domain VS_1855 PF08448 PAS fold VS_1855 PF00990 Diguanylate cyclase, GGDEF domain VS_1855 PF00563 EAL domain VS_1857 PF00072 Response regulator receiver domain VS_1857 PF00486 Transcriptional regulatory protein, C terminal VS_1858 PF00512 His Kinase A (phospho-acceptor) domain VS_1858 PF00672 HAMP domain VS_1858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1859 PF09335 SNARE associated Golgi protein VS_1860 PF00535 Glycosyl transferase family 2 VS_1860 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VS_1869 PF02371 Transposase IS116/IS110/IS902 family VS_1869 PF01548 Transposase VS_1873 PF00665 Integrase core domain VS_1873 PF13276 HTH-like domain VS_1873 PF13333 Integrase core domain VS_1876 PF00293 NUDIX domain VS_1880 PF01548 Transposase VS_1880 PF02371 Transposase IS116/IS110/IS902 family VS_1884 PF00186 Dihydrofolate reductase VS_1886 PF01337 Barstar (barnase inhibitor) VS_1890 PF13495 Phage integrase, N-terminal SAM-like domain VS_1890 PF00589 Phage integrase family VS_1891 PF00067 Cytochrome P450 VS_1897 PF00268 Ribonucleotide reductase, small chain VS_1898 PF08343 Ribonucleotide reductase N-terminal VS_1898 PF00317 Ribonucleotide reductase, all-alpha domain VS_1898 PF02867 Ribonucleotide reductase, barrel domain VS_1899 PF07972 NrdI Flavodoxin like VS_1901 PF01521 Iron-sulphur cluster biosynthesis VS_1902 PF01458 Uncharacterized protein family (UPF0051) VS_1903 PF00005 ABC transporter VS_1904 PF01458 Uncharacterized protein family (UPF0051) VS_1905 PF00266 Aminotransferase class-V VS_1906 PF02657 Fe-S metabolism associated domain VS_1907 PF00672 HAMP domain VS_1907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1908 PF02028 BCCT, betaine/carnitine/choline family transporter VS_1909 PF02028 BCCT, betaine/carnitine/choline family transporter VS_1910 PF00196 Bacterial regulatory proteins, luxR family VS_1910 PF00072 Response regulator receiver domain VS_1911 PF07730 Histidine kinase VS_1911 PF17200 Single Cache domain 2 VS_1912 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_1914 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_1917 PF00753 Metallo-beta-lactamase superfamily VS_1918 PF05951 Bacterial protein of unknown function (DUF882) VS_1919 PF01471 Putative peptidoglycan binding domain VS_1919 PF03734 L,D-transpeptidase catalytic domain VS_1924 PF00925 GTP cyclohydrolase II VS_1926 PF03918 Cytochrome C biogenesis protein VS_1927 PF08534 Redoxin VS_1928 PF01578 Cytochrome C assembly protein VS_1928 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VS_1930 PF03916 Polysulphide reductase, NrfD VS_1931 PF13247 4Fe-4S dicluster domain VS_1933 PF02335 Cytochrome c552 VS_1934 PF00581 Rhodanese-like domain VS_1936 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_1936 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_1939 PF00317 Ribonucleotide reductase, all-alpha domain VS_1939 PF02867 Ribonucleotide reductase, barrel domain VS_1939 PF03477 ATP cone domain VS_1940 PF00268 Ribonucleotide reductase, small chain VS_1941 PF00175 Oxidoreductase NAD-binding domain VS_1941 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_1941 PF00970 Oxidoreductase FAD-binding domain VS_1942 PF00994 Probable molybdopterin binding domain VS_1945 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_1946 PF16653 Saccharopine dehydrogenase C-terminal domain VS_1946 PF03435 Saccharopine dehydrogenase NADP binding domain VS_1947 PF00202 Aminotransferase class-III VS_1953 PF01066 CDP-alcohol phosphatidyltransferase VS_1954 PF01541 GIY-YIG catalytic domain VS_1954 PF08459 UvrC Helix-hairpin-helix N-terminal VS_1954 PF02151 UvrB/uvrC motif VS_1955 PF02151 UvrB/uvrC motif VS_1955 PF08459 UvrC Helix-hairpin-helix N-terminal VS_1955 PF01541 GIY-YIG catalytic domain VS_1956 PF00196 Bacterial regulatory proteins, luxR family VS_1956 PF00072 Response regulator receiver domain VS_1957 PF00136 DNA polymerase family B VS_1957 PF03104 DNA polymerase family B, exonuclease domain VS_1960 PF04269 Protein of unknown function, DUF440 VS_1962 PF00849 RNA pseudouridylate synthase VS_1962 PF01479 S4 domain VS_1963 PF01300 Telomere recombination VS_1964 PF02811 PHP domain VS_1966 PF04715 Anthranilate synthase component I, N terminal region VS_1966 PF00425 chorismate binding enzyme VS_1967 PF00117 Glutamine amidotransferase class-I VS_1968 PF00591 Glycosyl transferase family, a/b domain VS_1968 PF02885 Glycosyl transferase family, helical bundle domain VS_1969 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VS_1969 PF00218 Indole-3-glycerol phosphate synthase VS_1972 PF01145 SPFH domain / Band 7 family VS_1972 PF16200 C-terminal region of band_7 VS_1974 PF00375 Sodium:dicarboxylate symporter family VS_1976 PF13276 HTH-like domain VS_1976 PF00665 Integrase core domain VS_1976 PF13333 Integrase core domain VS_1978 PF00849 RNA pseudouridylate synthase VS_1979 PF00672 HAMP domain VS_1979 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1979 PF12729 Four helix bundle sensory module for signal transduction VS_1980 PF00209 Sodium:neurotransmitter symporter family VS_1981 PF13396 Phospholipase_D-nuclease N-terminal VS_1981 PF13091 PLD-like domain VS_1982 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_1985 PF03352 Methyladenine glycosylase VS_1986 PF00873 AcrB/AcrD/AcrF family VS_1987 PF13533 Biotin-lipoyl like VS_1988 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_1988 PF00529 HlyD membrane-fusion protein of T1SS VS_1989 PF04024 PspC domain VS_1990 PF06667 Phage shock protein B VS_1991 PF04012 PspA/IM30 family VS_1992 PF00158 Sigma-54 interaction domain VS_1992 PF02954 Bacterial regulatory protein, Fis family VS_1993 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_1994 PF00528 Binding-protein-dependent transport system inner membrane component VS_1995 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_1995 PF00528 Binding-protein-dependent transport system inner membrane component VS_1996 PF00005 ABC transporter VS_1996 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_1997 PF00005 ABC transporter VS_2001 PF02833 DHHA2 domain VS_2001 PF01368 DHH family VS_2003 PF01568 Molydopterin dinucleotide binding domain VS_2003 PF00384 Molybdopterin oxidoreductase VS_2003 PF18364 Molybdopterin oxidoreductase N-terminal domain VS_2004 PF03264 NapC/NirT cytochrome c family, N-terminal region VS_2005 PF06796 Periplasmic nitrate reductase protein NapE VS_2006 PF03649 Uncharacterised protein family (UPF0014) VS_2008 PF01226 Formate/nitrite transporter VS_2013 PF00265 Thymidine kinase VS_2015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_2017 PF00563 EAL domain VS_2017 PF08668 HDOD domain VS_2018 PF02810 SEC-C motif VS_2019 PF01502 Phosphoribosyl-AMP cyclohydrolase VS_2019 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VS_2021 PF00977 Histidine biosynthesis protein VS_2022 PF00117 Glutamine amidotransferase class-I VS_2023 PF00475 Imidazoleglycerol-phosphate dehydratase VS_2023 PF08645 Polynucleotide kinase 3 phosphatase VS_2024 PF00155 Aminotransferase class I and II VS_2025 PF00815 Histidinol dehydrogenase VS_2026 PF01634 ATP phosphoribosyltransferase VS_2026 PF08029 HisG, C-terminal domain VS_2027 PF03553 Na+/H+ antiporter family VS_2029 PF00816 H-NS histone family VS_2030 PF00294 pfkB family carbohydrate kinase VS_2034 PF00206 Lyase VS_2034 PF08328 Adenylosuccinate lyase C-terminal VS_2038 PF08241 Methyltransferase domain VS_2041 PF00202 Aminotransferase class-III VS_2044 PF16193 AAA C-terminal domain VS_2044 PF12002 MgsA AAA+ ATPase C terminal VS_2044 PF00004 ATPase family associated with various cellular activities (AAA) VS_2045 PF03548 Outer membrane lipoprotein carrier protein LolA VS_2046 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VS_2046 PF17854 FtsK alpha domain VS_2046 PF09397 Ftsk gamma domain VS_2046 PF01580 FtsK/SpoIIIE family VS_2047 PF01037 Lrp/AsnC ligand binding domain VS_2048 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VS_2048 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VS_2050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2050 PF03466 LysR substrate binding domain VS_2052 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VS_2054 PF18073 Rubredoxin metal binding domain VS_2055 PF06305 Lipopolysaccharide assembly protein A domain VS_2057 PF00575 S1 RNA binding domain VS_2059 PF02348 Cytidylyltransferase VS_2062 PF00005 ABC transporter VS_2062 PF00664 ABC transporter transmembrane region VS_2063 PF03772 Competence protein VS_2063 PF00753 Metallo-beta-lactamase superfamily VS_2065 PF12704 MacB-like periplasmic core domain VS_2065 PF02687 FtsX-like permease family VS_2066 PF00005 ABC transporter VS_2067 PF12704 MacB-like periplasmic core domain VS_2067 PF02687 FtsX-like permease family VS_2069 PF03461 TRCF domain VS_2069 PF02559 CarD-like/TRCF domain VS_2069 PF00270 DEAD/DEAH box helicase VS_2069 PF00271 Helicase conserved C-terminal domain VS_2069 PF17757 UvrB interaction domain VS_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2076 PF13036 Peptidoglycan-synthase activator LpoB VS_2076 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VS_2079 PF01230 HIT domain VS_2080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_2080 PF00672 HAMP domain VS_2082 PF01048 Phosphorylase superfamily VS_2083 PF00403 Heavy-metal-associated domain VS_2084 PF01554 MatE VS_2085 PF00571 CBS domain VS_2087 PF00591 Glycosyl transferase family, a/b domain VS_2087 PF02885 Glycosyl transferase family, helical bundle domain VS_2090 PF01323 DSBA-like thioredoxin domain VS_2092 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_2095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_2096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_2101 PF14864 Alkyl sulfatase C-terminal VS_2101 PF00753 Metallo-beta-lactamase superfamily VS_2101 PF14863 Alkyl sulfatase dimerisation VS_2103 PF00873 AcrB/AcrD/AcrF family VS_2105 PF17932 Tetracyclin repressor-like, C-terminal domain VS_2105 PF00440 Bacterial regulatory proteins, tetR family VS_2106 PF03466 LysR substrate binding domain VS_2106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2107 PF08803 Putative mono-oxygenase ydhR VS_2109 PF08212 Lipocalin-like domain VS_2110 PF07969 Amidohydrolase family VS_2112 PF00005 ABC transporter VS_2113 PF01497 Periplasmic binding protein VS_2114 PF01032 FecCD transport family VS_2116 PF07715 TonB-dependent Receptor Plug Domain VS_2116 PF00593 TonB dependent receptor VS_2119 PF00085 Thioredoxin VS_2120 PF02683 Cytochrome C biogenesis protein transmembrane region VS_2120 PF11412 Disulphide bond corrector protein DsbC VS_2124 PF03330 Lytic transglycolase VS_2124 PF05036 Sporulation related domain VS_2126 PF00578 AhpC/TSA family VS_2126 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_2127 PF13192 Thioredoxin domain VS_2127 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2128 PF01810 LysE type translocator VS_2129 PF01037 Lrp/AsnC ligand binding domain VS_2133 PF00376 MerR family regulatory protein VS_2133 PF09278 MerR, DNA binding VS_2135 PF03466 LysR substrate binding domain VS_2135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2138 PF01645 Conserved region in glutamate synthase VS_2138 PF13187 4Fe-4S dicluster domain VS_2141 PF02954 Bacterial regulatory protein, Fis family VS_2141 PF00072 Response regulator receiver domain VS_2141 PF00158 Sigma-54 interaction domain VS_2145 PF03109 ABC1 family VS_2146 PF00255 Glutathione peroxidase VS_2151 PF00535 Glycosyl transferase family 2 VS_2152 PF00534 Glycosyl transferases group 1 VS_2152 PF13439 Glycosyltransferase Family 4 VS_2153 PF01693 Caulimovirus viroplasmin VS_2161 PF13649 Methyltransferase domain VS_2164 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VS_2165 PF09619 Type III secretion system lipoprotein chaperone (YscW) VS_2168 PF01037 Lrp/AsnC ligand binding domain VS_2168 PF13404 AsnC-type helix-turn-helix domain VS_2169 PF00291 Pyridoxal-phosphate dependent enzyme VS_2171 PF00873 AcrB/AcrD/AcrF family VS_2172 PF13533 Biotin-lipoyl like VS_2182 PF07690 Major Facilitator Superfamily VS_2183 PF03601 Conserved hypothetical protein 698 VS_2185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2185 PF03466 LysR substrate binding domain VS_2186 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_2186 PF02378 Phosphotransferase system, EIIC VS_2186 PF00367 phosphotransferase system, EIIB VS_2187 PF13193 AMP-binding enzyme C-terminal domain VS_2187 PF00501 AMP-binding enzyme VS_2188 PF13378 Enolase C-terminal domain-like VS_2189 PF00378 Enoyl-CoA hydratase/isomerase VS_2190 PF00561 alpha/beta hydrolase fold VS_2192 PF00425 chorismate binding enzyme VS_2193 PF00155 Aminotransferase class I and II VS_2196 PF01966 HD domain VS_2196 PF13286 Phosphohydrolase-associated domain VS_2200 PF13145 PPIC-type PPIASE domain VS_2201 PF00216 Bacterial DNA-binding protein VS_2203 PF00004 ATPase family associated with various cellular activities (AAA) VS_2203 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_2203 PF02190 ATP-dependent protease La (LON) substrate-binding domain VS_2207 PF00512 His Kinase A (phospho-acceptor) domain VS_2207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2207 PF02743 Cache domain VS_2208 PF02954 Bacterial regulatory protein, Fis family VS_2208 PF00072 Response regulator receiver domain VS_2208 PF00158 Sigma-54 interaction domain VS_2210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_2211 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VS_2212 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_2214 PF01648 4'-phosphopantetheinyl transferase superfamily VS_2215 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_2215 PF08659 KR domain VS_2215 PF16197 Ketoacyl-synthetase C-terminal extension VS_2215 PF14765 Polyketide synthase dehydratase VS_2215 PF00698 Acyl transferase domain VS_2215 PF00550 Phosphopantetheine attachment site VS_2215 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_2217 PF16197 Ketoacyl-synthetase C-terminal extension VS_2217 PF14765 Polyketide synthase dehydratase VS_2217 PF00550 Phosphopantetheine attachment site VS_2217 PF08659 KR domain VS_2217 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_2217 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_2217 PF00698 Acyl transferase domain VS_2218 PF00698 Acyl transferase domain VS_2218 PF03060 Nitronate monooxygenase VS_2219 PF00570 HRDC domain VS_2219 PF01612 3'-5' exonuclease VS_2220 PF13193 AMP-binding enzyme C-terminal domain VS_2220 PF00501 AMP-binding enzyme VS_2221 PF00561 alpha/beta hydrolase fold VS_2225 PF00814 Glycoprotease family VS_2226 PF13307 Helicase C-terminal domain VS_2226 PF04851 Type III restriction enzyme, res subunit VS_2228 PF01842 ACT domain VS_2228 PF00551 Formyl transferase VS_2229 PF06185 YecM protein VS_2233 PF07670 Nucleoside recognition VS_2233 PF02421 Ferrous iron transport protein B VS_2233 PF07664 Ferrous iron transport protein B C terminus VS_2234 PF04023 FeoA domain VS_2236 PF12833 Helix-turn-helix domain VS_2237 PF01297 Zinc-uptake complex component A periplasmic VS_2238 PF00005 ABC transporter VS_2239 PF00950 ABC 3 transport family VS_2240 PF02629 CoA binding domain VS_2240 PF00549 CoA-ligase VS_2242 PF02817 e3 binding domain VS_2242 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_2242 PF00364 Biotin-requiring enzyme VS_2243 PF16078 2-oxoglutarate dehydrogenase N-terminus VS_2243 PF00676 Dehydrogenase E1 component VS_2243 PF02779 Transketolase, pyrimidine binding domain VS_2243 PF16870 2-oxoglutarate dehydrogenase C-terminal VS_2244 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_2246 PF00890 FAD binding domain VS_2246 PF02910 Fumarate reductase flavoprotein C-term VS_2247 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_2248 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_2249 PF00285 Citrate synthase, C-terminal domain VS_2250 PF01784 NIF3 (NGG1p interacting factor 3) VS_2252 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_2252 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_2252 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_2252 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_2254 PF12697 Alpha/beta hydrolase family VS_2256 PF00258 Flavodoxin VS_2258 PF01475 Ferric uptake regulator family VS_2260 PF02378 Phosphotransferase system, EIIC VS_2260 PF00367 phosphotransferase system, EIIB VS_2260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_2261 PF01979 Amidohydrolase family VS_2262 PF01047 MarR family VS_2262 PF00480 ROK family VS_2263 PF00999 Sodium/hydrogen exchanger family VS_2263 PF02254 TrkA-N domain VS_2264 PF13537 Glutamine amidotransferase domain VS_2264 PF00733 Asparagine synthase VS_2265 PF02357 Transcription termination factor nusG VS_2266 PF00854 POT family VS_2270 PF00486 Transcriptional regulatory protein, C terminal VS_2271 PF17323 Trans-membrane regulatory protein ToxS VS_2273 PF12850 Calcineurin-like phosphoesterase superfamily domain VS_2274 PF00571 CBS domain VS_2276 PF07556 Protein of unknown function (DUF1538) VS_2277 PF07556 Protein of unknown function (DUF1538) VS_2278 PF08338 Domain of unknown function (DUF1731) VS_2278 PF01370 NAD dependent epimerase/dehydratase family VS_2279 PF00106 short chain dehydrogenase VS_2280 PF00085 Thioredoxin VS_2281 PF01145 SPFH domain / Band 7 family VS_2281 PF16200 C-terminal region of band_7 VS_2283 PF13411 MerR HTH family regulatory protein VS_2285 PF13609 Gram-negative porin VS_2287 PF04354 ZipA, C-terminal FtsZ-binding domain VS_2289 PF00291 Pyridoxal-phosphate dependent enzyme VS_2290 PF00381 PTS HPr component phosphorylation site VS_2291 PF02896 PEP-utilising enzyme, TIM barrel domain VS_2291 PF05524 PEP-utilising enzyme, N-terminal VS_2291 PF00391 PEP-utilising enzyme, mobile domain VS_2292 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_2293 PF00700 Bacterial flagellin C-terminal helical region VS_2293 PF07196 Flagellin hook IN motif VS_2293 PF00669 Bacterial flagellin N-terminal helical region VS_2294 PF07196 Flagellin hook IN motif VS_2294 PF00700 Bacterial flagellin C-terminal helical region VS_2294 PF00669 Bacterial flagellin N-terminal helical region VS_2295 PF04261 Dyp-type peroxidase family VS_2296 PF11143 Protein of unknown function (DUF2919) VS_2300 PF03960 ArsC family VS_2305 PF00701 Dihydrodipicolinate synthetase family VS_2307 PF00578 AhpC/TSA family VS_2308 PF01594 AI-2E family transporter VS_2311 PF01435 Peptidase family M48 VS_2311 PF13181 Tetratricopeptide repeat VS_2312 PF03960 ArsC family VS_2313 PF03358 NADPH-dependent FMN reductase VS_2316 PF00860 Permease family VS_2319 PF00551 Formyl transferase VS_2320 PF13230 Glutamine amidotransferases class-II VS_2321 PF13580 SIS domain VS_2322 PF09317 Domain of unknown function (DUF1974) VS_2322 PF02770 Acyl-CoA dehydrogenase, middle domain VS_2322 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_2322 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_2324 PF00929 Exonuclease VS_2326 PF13333 Integrase core domain VS_2326 PF13276 HTH-like domain VS_2326 PF00665 Integrase core domain VS_2328 PF08241 Methyltransferase domain VS_2330 PF01476 LysM domain VS_2330 PF01464 Transglycosylase SLT domain VS_2332 PF03372 Endonuclease/Exonuclease/phosphatase family VS_2333 PF00543 Nitrogen regulatory protein P-II VS_2334 PF00034 Cytochrome c VS_2337 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_2337 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_2337 PF14579 Helix-hairpin-helix motif VS_2337 PF02811 PHP domain VS_2337 PF01336 OB-fold nucleic acid binding domain VS_2339 PF02684 Lipid-A-disaccharide synthetase VS_2342 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VS_2342 PF00132 Bacterial transferase hexapeptide (six repeats) VS_2343 PF03938 Outer membrane protein (OmpH-like) VS_2344 PF01103 Surface antigen VS_2344 PF07244 Surface antigen variable number repeat VS_2345 PF02163 Peptidase family M50 VS_2345 PF17820 PDZ domain VS_2346 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VS_2346 PF13288 DXP reductoisomerase C-terminal domain VS_2346 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VS_2349 PF01255 Putative undecaprenyl diphosphate synthase VS_2350 PF01765 Ribosome recycling factor VS_2351 PF00696 Amino acid kinase family VS_2353 PF00318 Ribosomal protein S2 VS_2354 PF00557 Metallopeptidase family M24 VS_2357 PF00849 RNA pseudouridylate synthase VS_2358 PF04287 tRNA pseudouridine synthase C VS_2365 PF03806 AbgT putative transporter family VS_2367 PF01980 tRNA-methyltransferase O VS_2367 PF18389 TrmO C-terminal domain VS_2373 PF00464 Serine hydroxymethyltransferase VS_2374 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VS_2374 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VS_2377 PF00128 Alpha amylase, catalytic domain VS_2377 PF16657 Maltogenic Amylase, C-terminal domain VS_2378 PF00367 phosphotransferase system, EIIB VS_2378 PF02378 Phosphotransferase system, EIIC VS_2379 PF00356 Bacterial regulatory proteins, lacI family VS_2382 PF09383 NIL domain VS_2382 PF00005 ABC transporter VS_2383 PF00528 Binding-protein-dependent transport system inner membrane component VS_2384 PF03180 NLPA lipoprotein VS_2386 PF13276 HTH-like domain VS_2386 PF00665 Integrase core domain VS_2386 PF13333 Integrase core domain VS_2388 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VS_2392 PF00990 Diguanylate cyclase, GGDEF domain VS_2392 PF00072 Response regulator receiver domain VS_2393 PF03641 Possible lysine decarboxylase VS_2393 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VS_2393 PF11892 Domain of unknown function (DUF3412) VS_2395 PF07715 TonB-dependent Receptor Plug Domain VS_2395 PF00593 TonB dependent receptor VS_2399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2399 PF03466 LysR substrate binding domain VS_2402 PF13677 Membrane MotB of proton-channel complex MotA/MotB VS_2402 PF00691 OmpA family VS_2403 PF01618 MotA/TolQ/ExbB proton channel family VS_2405 PF00348 Polyprenyl synthetase VS_2407 PF04608 Phosphatidylglycerophosphatase A VS_2408 PF02769 AIR synthase related protein, C-terminal domain VS_2408 PF00586 AIR synthase related protein, N-terminal domain VS_2410 PF00885 6,7-dimethyl-8-ribityllumazine synthase VS_2411 PF00925 GTP cyclohydrolase II VS_2411 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VS_2412 PF00677 Lumazine binding domain VS_2413 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_2413 PF01872 RibD C-terminal domain VS_2416 PF00696 Amino acid kinase family VS_2416 PF01472 PUA domain VS_2417 PF07417 Sigma factor-binding transcriptional regulator Crl VS_2421 PF00860 Permease family VS_2422 PF07687 Peptidase dimerisation domain VS_2422 PF01546 Peptidase family M20/M25/M40 VS_2428 PF03497 Anthrax toxin LF subunit VS_2428 PF06594 Haemolysin-type calcium binding protein related domain VS_2428 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) VS_2428 PF02382 N-terminal domain in RTX protein VS_2429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2429 PF03466 LysR substrate binding domain VS_2430 PF02417 Chromate transporter VS_2431 PF01209 ubiE/COQ5 methyltransferase family VS_2437 PF00437 Type II/IV secretion system protein VS_2443 PF04972 BON domain VS_2443 PF13629 Pilus formation protein N terminal region VS_2443 PF00263 Bacterial type II and III secretion system protein VS_2448 PF12833 Helix-turn-helix domain VS_2448 PF02311 AraC-like ligand binding domain VS_2450 PF00501 AMP-binding enzyme VS_2452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2452 PF03466 LysR substrate binding domain VS_2453 PF09905 DNA-binding protein VF530 VS_2454 PF00009 Elongation factor Tu GTP binding domain VS_2454 PF03764 Elongation factor G, domain IV VS_2454 PF14492 Elongation Factor G, domain II VS_2454 PF00679 Elongation factor G C-terminus VS_2454 PF03144 Elongation factor Tu domain 2 VS_2456 PF18073 Rubredoxin metal binding domain VS_2458 PF18429 Domain of unknown function (DUF5609) VS_2460 PF01048 Phosphorylase superfamily VS_2461 PF01676 Metalloenzyme superfamily VS_2462 PF02885 Glycosyl transferase family, helical bundle domain VS_2462 PF00591 Glycosyl transferase family, a/b domain VS_2462 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VS_2464 PF01773 Na+ dependent nucleoside transporter N-terminus VS_2464 PF07662 Na+ dependent nucleoside transporter C-terminus VS_2464 PF07670 Nucleoside recognition VS_2465 PF01026 TatD related DNase VS_2468 PF00583 Acetyltransferase (GNAT) family VS_2470 PF13508 Acetyltransferase (GNAT) domain VS_2472 PF00563 EAL domain VS_2472 PF00990 Diguanylate cyclase, GGDEF domain VS_2472 PF03707 Bacterial signalling protein N terminal repeat VS_2475 PF01554 MatE VS_2477 PF07719 Tetratricopeptide repeat VS_2477 PF13181 Tetratricopeptide repeat VS_2483 PF13184 NusA-like KH domain VS_2483 PF08529 NusA N-terminal domain VS_2483 PF00575 S1 RNA binding domain VS_2487 PF03840 Preprotein translocase SecG subunit VS_2489 PF00809 Pterin binding enzyme VS_2490 PF17862 AAA+ lid domain VS_2490 PF00004 ATPase family associated with various cellular activities (AAA) VS_2490 PF01434 Peptidase family M41 VS_2490 PF06480 FtsH Extracellular VS_2492 PF01985 CRS1 / YhbY (CRM) domain VS_2493 PF03449 Transcription elongation factor, N-terminal VS_2493 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_2494 PF13609 Gram-negative porin VS_2495 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VS_2496 PF00571 CBS domain VS_2496 PF01769 Divalent cation transporter VS_2496 PF03448 MgtE intracellular N domain VS_2497 PF00579 tRNA synthetases class I (W and Y) VS_2498 PF01476 LysM domain VS_2498 PF01551 Peptidase family M23 VS_2498 PF08525 Opacity-associated protein A N-terminal motif VS_2499 PF00873 AcrB/AcrD/AcrF family VS_2503 PF01594 AI-2E family transporter VS_2504 PF08468 Methyltransferase small domain N-terminal VS_2504 PF05175 Methyltransferase small domain VS_2505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2505 PF00512 His Kinase A (phospho-acceptor) domain VS_2505 PF01627 Hpt domain VS_2505 PF17149 Periplasmic sensor domain found in signal transduction proteins VS_2505 PF00672 HAMP domain VS_2505 PF00072 Response regulator receiver domain VS_2506 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_2507 PF00528 Binding-protein-dependent transport system inner membrane component VS_2508 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_2508 PF00528 Binding-protein-dependent transport system inner membrane component VS_2509 PF00005 ABC transporter VS_2509 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_2510 PF00005 ABC transporter VS_2510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_2512 PF01869 BadF/BadG/BcrA/BcrD ATPase family VS_2513 PF02838 Glycosyl hydrolase family 20, domain 2 VS_2513 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_2514 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VS_2514 PF06165 Glycosyltransferase family 36 VS_2515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_2515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_2515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_2515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_2516 PF00005 ABC transporter VS_2516 PF08402 TOBE domain VS_2518 PF13416 Bacterial extracellular solute-binding protein VS_2519 PF00909 Ammonium Transporter Family VS_2520 PF00543 Nitrogen regulatory protein P-II VS_2521 PF06062 Uncharacterised protein family (UPF0231) VS_2522 PF00330 Aconitase family (aconitate hydratase) VS_2522 PF06434 Aconitate hydratase 2 N-terminus VS_2522 PF11791 Aconitate B N-terminal domain VS_2523 PF01734 Patatin-like phospholipase VS_2524 PF00912 Transglycosylase VS_2524 PF00905 Penicillin binding protein transpeptidase domain VS_2524 PF14814 Bifunctional transglycosylase second domain VS_2526 PF00270 DEAD/DEAH box helicase VS_2526 PF04408 Helicase associated domain (HA2) VS_2526 PF00271 Helicase conserved C-terminal domain VS_2526 PF08482 ATP-dependent helicase C-terminal VS_2528 PF01258 Prokaryotic dksA/traR C4-type zinc finger VS_2529 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_2530 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_2530 PF12626 Polymerase A arginine-rich C-terminus VS_2530 PF01743 Poly A polymerase head domain VS_2531 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_2534 PF01061 ABC-2 type transporter VS_2535 PF00005 ABC transporter VS_2536 PF00916 Sulfate permease family VS_2536 PF01740 STAS domain VS_2537 PF00484 Carbonic anhydrase VS_2538 PF00156 Phosphoribosyl transferase domain VS_2539 PF00440 Bacterial regulatory proteins, tetR family VS_2540 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_2541 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_2541 PF02817 e3 binding domain VS_2541 PF00364 Biotin-requiring enzyme VS_2542 PF00456 Transketolase, thiamine diphosphate binding domain VS_2542 PF17831 Pyruvate dehydrogenase E1 component middle domain VS_2543 PF07729 FCD domain VS_2543 PF00392 Bacterial regulatory proteins, gntR family VS_2545 PF01510 N-acetylmuramoyl-L-alanine amidase VS_2546 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VS_2546 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VS_2547 PF00114 Pilin (bacterial filament) VS_2547 PF07963 Prokaryotic N-terminal methylation motif VS_2548 PF00437 Type II/IV secretion system protein VS_2548 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_2549 PF00482 Type II secretion system (T2SS), protein F VS_2550 PF06750 Bacterial Peptidase A24 N-terminal domain VS_2550 PF01478 Type IV leader peptidase family VS_2551 PF01121 Dephospho-CoA kinase VS_2552 PF01121 Dephospho-CoA kinase VS_2554 PF03884 DNA gyrase inhibitor YacG VS_2559 PF02881 SRP54-type protein, helical bundle domain VS_2559 PF02978 Signal peptide binding domain VS_2559 PF00448 SRP54-type protein, GTPase domain VS_2560 PF01578 Cytochrome C assembly protein VS_2561 PF00571 CBS domain VS_2561 PF03471 Transporter associated domain VS_2561 PF01595 Cyclin M transmembrane N-terminal domain VS_2564 PF04262 Glutamate-cysteine ligase VS_2565 PF00675 Insulinase (Peptidase family M16) VS_2565 PF05193 Peptidase M16 inactive domain VS_2566 PF09335 SNARE associated Golgi protein VS_2567 PF08240 Alcohol dehydrogenase GroES-like domain VS_2567 PF00107 Zinc-binding dehydrogenase VS_2568 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VS_2569 PF02436 Conserved carboxylase domain VS_2569 PF00682 HMGL-like VS_2569 PF00364 Biotin-requiring enzyme VS_2570 PF04277 Oxaloacetate decarboxylase, gamma chain VS_2582 PF01842 ACT domain VS_2582 PF00696 Amino acid kinase family VS_2582 PF13840 ACT domain VS_2583 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_2583 PF02272 DHHA1 domain VS_2583 PF01411 tRNA synthetases class II (A) VS_2585 PF00128 Alpha amylase, catalytic domain VS_2585 PF00686 Starch binding domain VS_2586 PF17912 MalK OB fold domain VS_2586 PF00005 ABC transporter VS_2588 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VS_2588 PF00132 Bacterial transferase hexapeptide (six repeats) VS_2590 PF13416 Bacterial extracellular solute-binding protein VS_2591 PF00528 Binding-protein-dependent transport system inner membrane component VS_2592 PF00528 Binding-protein-dependent transport system inner membrane component VS_2593 PF02903 Alpha amylase, N-terminal ig-like domain VS_2593 PF16657 Maltogenic Amylase, C-terminal domain VS_2593 PF00128 Alpha amylase, catalytic domain VS_2596 PF00154 recA bacterial DNA recombination protein VS_2597 PF02464 Competence-damaged protein VS_2599 PF04539 Sigma-70 region 3 VS_2599 PF00140 Sigma-70 factor, region 1.2 VS_2599 PF04545 Sigma-70, region 4 VS_2599 PF04542 Sigma-70 region 2 VS_2600 PF01476 LysM domain VS_2600 PF01551 Peptidase family M23 VS_2602 PF01975 Survival protein SurE VS_2603 PF01142 tRNA pseudouridine synthase D (TruD) VS_2604 PF02542 YgbB family VS_2607 PF03952 Enolase, N-terminal domain VS_2607 PF00113 Enolase, C-terminal TIM barrel domain VS_2610 PF03819 MazG nucleotide pyrophosphohydrolase domain VS_2611 PF13291 ACT domain VS_2611 PF04607 Region found in RelA / SpoT proteins VS_2611 PF02824 TGS domain VS_2614 PF00672 HAMP domain VS_2614 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_2614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2614 PF00512 His Kinase A (phospho-acceptor) domain VS_2614 PF01627 Hpt domain VS_2614 PF00072 Response regulator receiver domain VS_2616 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VS_2618 PF07650 KH domain VS_2618 PF01926 50S ribosome-binding GTPase VS_2620 PF10502 Signal peptidase, peptidase S26 VS_2623 PF17188 MucB/RseB C-terminal domain VS_2623 PF03888 MucB/RseB N-terminal domain VS_2624 PF03873 Anti sigma-E protein RseA, C-terminal domain VS_2624 PF03872 Anti sigma-E protein RseA, N-terminal domain VS_2625 PF08281 Sigma-70, region 4 VS_2625 PF04542 Sigma-70 region 2 VS_2627 PF02910 Fumarate reductase flavoprotein C-term VS_2627 PF00890 FAD binding domain VS_2629 PF03937 Flavinator of succinate dehydrogenase VS_2633 PF01494 FAD binding domain VS_2634 PF01494 FAD binding domain VS_2636 PF05164 Cell division protein ZapA VS_2638 PF01812 5-formyltetrahydrofolate cyclo-ligase family VS_2640 PF01842 ACT domain VS_2640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_2640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_2642 PF03466 LysR substrate binding domain VS_2642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2643 PF01810 LysE type translocator VS_2644 PF05552 Conserved TM helix VS_2644 PF00924 Mechanosensitive ion channel VS_2645 PF01116 Fructose-bisphosphate aldolase class-II VS_2646 PF00162 Phosphoglycerate kinase VS_2648 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_2648 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_2649 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_2649 PF00367 phosphotransferase system, EIIB VS_2649 PF02378 Phosphotransferase system, EIIC VS_2650 PF01547 Bacterial extracellular solute-binding protein VS_2651 PF00512 His Kinase A (phospho-acceptor) domain VS_2651 PF08521 Two-component sensor kinase N-terminal VS_2651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2652 PF00486 Transcriptional regulatory protein, C terminal VS_2652 PF00072 Response regulator receiver domain VS_2654 PF00456 Transketolase, thiamine diphosphate binding domain VS_2654 PF02779 Transketolase, pyrimidine binding domain VS_2654 PF02780 Transketolase, C-terminal domain VS_2656 PF00005 ABC transporter VS_2658 PF01032 FecCD transport family VS_2659 PF00300 Histidine phosphatase superfamily (branch 1) VS_2661 PF01888 CbiD VS_2662 PF02570 Precorrin-8X methylmutase VS_2663 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2664 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2665 PF01890 Cobalamin synthesis G C-terminus VS_2665 PF11761 Cobalamin biosynthesis central region VS_2665 PF11760 Cobalamin synthesis G N-terminal VS_2667 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_2667 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2668 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2669 PF03186 CobD/Cbib protein VS_2670 PF00155 Aminotransferase class I and II VS_2671 PF07685 CobB/CobQ-like glutamine amidotransferase domain VS_2671 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_2674 PF04231 Endonuclease I VS_2677 PF04452 RNA methyltransferase VS_2678 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VS_2678 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VS_2680 PF03652 Holliday junction resolvase VS_2681 PF00437 Type II/IV secretion system protein VS_2682 PF00437 Type II/IV secretion system protein VS_2683 PF01168 Alanine racemase, N-terminal domain VS_2684 PF03807 NADP oxidoreductase coenzyme F420-dependent VS_2684 PF14748 Pyrroline-5-carboxylate reductase dimerisation VS_2685 PF02325 YGGT family VS_2686 PF02594 Uncharacterised ACR, YggU family COG1872 VS_2688 PF01725 Ham1 family VS_2689 PF04055 Radical SAM superfamily VS_2689 PF06969 HemN C-terminal domain VS_2691 PF02390 Putative methyltransferase VS_2692 PF00633 Helix-hairpin-helix motif VS_2692 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_2692 PF14815 NUDIX domain VS_2694 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VS_2694 PF01464 Transglycosylase SLT domain VS_2703 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_2703 PF00672 HAMP domain VS_2703 PF12729 Four helix bundle sensory module for signal transduction VS_2723 PF00072 Response regulator receiver domain VS_2727 PF03739 Lipopolysaccharide export system permease LptF/LptG VS_2728 PF03739 Lipopolysaccharide export system permease LptF/LptG VS_2729 PF02789 Cytosol aminopeptidase family, N-terminal domain VS_2729 PF00883 Cytosol aminopeptidase family, catalytic domain VS_2730 PF02789 Cytosol aminopeptidase family, N-terminal domain VS_2730 PF00883 Cytosol aminopeptidase family, catalytic domain VS_2731 PF04364 DNA polymerase III chi subunit, HolC VS_2732 PF10458 Valyl tRNA synthetase tRNA binding arm VS_2732 PF08264 Anticodon-binding domain of tRNA VS_2732 PF00133 tRNA synthetases class I (I, L, M and V) VS_2735 PF00583 Acetyltransferase (GNAT) family VS_2737 PF06877 Regulator of ribonuclease activity B VS_2739 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2739 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2741 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_2741 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_2742 PF01042 Endoribonuclease L-PSP VS_2743 PF01553 Acyltransferase VS_2745 PF01722 BolA-like protein VS_2747 PF05494 MlaC protein VS_2748 PF02470 MlaD protein VS_2749 PF02405 Permease MlaE VS_2750 PF00005 ABC transporter VS_2751 PF01699 Sodium/calcium exchanger protein VS_2752 PF01380 SIS domain VS_2752 PF00571 CBS domain VS_2755 PF03968 OstA-like protein VS_2756 PF00005 ABC transporter VS_2756 PF12399 Branched-chain amino acid ATP-binding cassette transporter VS_2757 PF00309 Sigma-54 factor, Activator interacting domain (AID) VS_2757 PF04963 Sigma-54 factor, core binding domain VS_2757 PF04552 Sigma-54, DNA binding domain VS_2758 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_2759 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_2761 PF00381 PTS HPr component phosphorylation site VS_2762 PF00571 CBS domain VS_2762 PF03448 MgtE intracellular N domain VS_2762 PF01769 Divalent cation transporter VS_2763 PF01523 Putative modulator of DNA gyrase VS_2765 PF00005 ABC transporter VS_2766 PF00528 Binding-protein-dependent transport system inner membrane component VS_2769 PF02441 Flavoprotein VS_2770 PF02875 Mur ligase family, glutamate ligase domain VS_2770 PF08245 Mur ligase middle domain VS_2770 PF01225 Mur ligase family, catalytic domain VS_2773 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VS_2774 PF04357 TamB, inner membrane protein subunit of TAM complex VS_2775 PF17243 POTRA domain TamA domain 1 VS_2775 PF07244 Surface antigen variable number repeat VS_2775 PF01103 Surface antigen VS_2776 PF01625 Peptide methionine sulfoxide reductase VS_2779 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VS_2782 PF00005 ABC transporter VS_2787 PF03600 Citrate transporter VS_2787 PF02080 TrkA-C domain VS_2790 PF02872 5'-nucleotidase, C-terminal domain VS_2790 PF00149 Calcineurin-like phosphoesterase VS_2799 PF13673 Acetyltransferase (GNAT) domain VS_2801 PF04225 Opacity-associated protein A LysM-like domain VS_2801 PF08525 Opacity-associated protein A N-terminal motif VS_2803 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2803 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_2810 PF00416 Ribosomal protein S13/S18 VS_2810.1 PF00444 Ribosomal protein L36 VS_2811 PF00344 SecY translocase VS_2813 PF00327 Ribosomal protein L30p/L7e VS_2818 PF00253 Ribosomal protein S14p/S29e VS_2821 PF00238 Ribosomal protein L14p/L23e VS_2823 PF00831 Ribosomal L29 protein VS_2826 PF00237 Ribosomal protein L22p/L17e VS_2833 PF00338 Ribosomal protein S10p/S20e VS_2834 PF00009 Elongation factor Tu GTP binding domain VS_2834 PF03143 Elongation factor Tu C-terminal domain VS_2834 PF03144 Elongation factor Tu domain 2 VS_2835 PF03144 Elongation factor Tu domain 2 VS_2835 PF00009 Elongation factor Tu GTP binding domain VS_2835 PF14492 Elongation Factor G, domain II VS_2835 PF00679 Elongation factor G C-terminus VS_2835 PF03764 Elongation factor G, domain IV VS_2839 PF02635 DsrE/DsrF-like family VS_2840 PF02635 DsrE/DsrF-like family VS_2841 PF08348 YheO-like PAS domain VS_2841 PF13309 HTH domain VS_2842 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2842 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_2845 PF01112 Asparaginase VS_2846 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2848 PF00999 Sodium/hydrogen exchanger family VS_2848 PF02254 TrkA-N domain VS_2849 PF02525 Flavodoxin-like fold VS_2850 PF00005 ABC transporter VS_2850 PF12848 ABC transporter VS_2852 PF00561 alpha/beta hydrolase fold VS_2854 PF00485 Phosphoribulokinase / Uridine kinase family VS_2855 PF00027 Cyclic nucleotide-binding domain VS_2855 PF13545 Crp-like helix-turn-helix domain VS_2857 PF13276 HTH-like domain VS_2857 PF00665 Integrase core domain VS_2857 PF13333 Integrase core domain VS_2860 PF04958 Arginine N-succinyltransferase beta subunit VS_2861 PF00202 Aminotransferase class-III VS_2862 PF00117 Glutamine amidotransferase class-I VS_2863 PF00990 Diguanylate cyclase, GGDEF domain VS_2863 PF00563 EAL domain VS_2863 PF03707 Bacterial signalling protein N terminal repeat VS_2866 PF00579 tRNA synthetases class I (W and Y) VS_2867 PF13419 Haloacid dehalogenase-like hydrolase VS_2868 PF00834 Ribulose-phosphate 3 epimerase family VS_2869 PF02086 D12 class N6 adenine-specific DNA methyltransferase VS_2872 PF01202 Shikimate kinase VS_2873 PF07660 Secretin and TonB N terminus short domain VS_2873 PF03958 Bacterial type II/III secretion system short domain VS_2873 PF00263 Bacterial type II and III secretion system protein VS_2873 PF11741 AMIN domain VS_2878 PF00905 Penicillin binding protein transpeptidase domain VS_2878 PF00912 Transglycosylase VS_2878 PF17092 Penicillin-binding protein OB-like domain VS_2879 PF03466 LysR substrate binding domain VS_2879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2880 PF08534 Redoxin VS_2880 PF00462 Glutaredoxin VS_2881 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2881 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_2882 PF01042 Endoribonuclease L-PSP VS_2885 PF00206 Lyase VS_2885 PF00583 Acetyltransferase (GNAT) family VS_2885 PF14698 Argininosuccinate lyase C-terminal VS_2886 PF00764 Arginosuccinate synthase VS_2887 PF00696 Amino acid kinase family VS_2888 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_2888 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_2892 PF02219 Methylenetetrahydrofolate reductase VS_2893 PF00696 Amino acid kinase family VS_2893 PF03447 Homoserine dehydrogenase, NAD binding domain VS_2893 PF00742 Homoserine dehydrogenase VS_2894 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_2896 PF00390 Malic enzyme, N-terminal domain VS_2896 PF03949 Malic enzyme, NAD binding domain VS_2898 PF17764 3′ DNA-binding domain (3′BD) VS_2898 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VS_2898 PF00271 Helicase conserved C-terminal domain VS_2898 PF00270 DEAD/DEAH box helicase VS_2898 PF18074 Primosomal protein N C-terminal domain VS_2899 PF00356 Bacterial regulatory proteins, lacI family VS_2903 PF01040 UbiA prenyltransferase family VS_2904 PF03737 Aldolase/RraA VS_2906 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VS_2909 PF05656 Protein of unknown function (DUF805) VS_2912 PF00121 Triosephosphate isomerase VS_2913 PF00365 Phosphofructokinase VS_2914 PF16916 Dimerisation domain of Zinc Transporter VS_2914 PF01545 Cation efflux family VS_2916 PF00072 Response regulator receiver domain VS_2916 PF00486 Transcriptional regulatory protein, C terminal VS_2917 PF16527 Two-component sensor protein CpxA, periplasmic domain VS_2917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2917 PF00672 HAMP domain VS_2917 PF00512 His Kinase A (phospho-acceptor) domain VS_2918 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_2918 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_2919 PF00588 SpoU rRNA Methylase family VS_2920 PF04186 FxsA cytoplasmic membrane protein VS_2921 PF10415 Fumarase C C-terminus VS_2921 PF00206 Lyase VS_2922 PF03605 Anaerobic c4-dicarboxylate membrane transporter VS_2923 PF03606 C4-dicarboxylate anaerobic carrier VS_2925 PF00696 Amino acid kinase family VS_2926 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2926 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2927 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2927 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2928 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_2928 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_2929 PF01316 Arginine repressor, DNA binding domain VS_2929 PF02863 Arginine repressor, C-terminal domain VS_2930 PF11412 Disulphide bond corrector protein DsbC VS_2930 PF02683 Cytochrome C biogenesis protein transmembrane region VS_2931 PF00072 Response regulator receiver domain VS_2931 PF00196 Bacterial regulatory proteins, luxR family VS_2932 PF02080 TrkA-C domain VS_2932 PF00999 Sodium/hydrogen exchanger family VS_2932 PF03471 Transporter associated domain VS_2935 PF00474 Sodium:solute symporter family VS_2937 PF10415 Fumarase C C-terminus VS_2937 PF00206 Lyase VS_2938 PF00672 HAMP domain VS_2938 PF00072 Response regulator receiver domain VS_2938 PF01627 Hpt domain VS_2938 PF00512 His Kinase A (phospho-acceptor) domain VS_2938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2939 PF12832 MFS_1 like family VS_2942 PF00501 AMP-binding enzyme VS_2942 PF16177 Acetyl-coenzyme A synthetase N-terminus VS_2942 PF13193 AMP-binding enzyme C-terminal domain VS_2943 PF01220 Dehydroquinase class II VS_2944 PF00364 Biotin-requiring enzyme VS_2945 PF02785 Biotin carboxylase C-terminal domain VS_2945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_2945 PF00289 Biotin carboxylase, N-terminal domain VS_2947 PF01207 Dihydrouridine synthase (Dus) VS_2949 PF17158 Membrane-associated sensor, integral membrane domain VS_2949 PF00990 Diguanylate cyclase, GGDEF domain VS_2950 PF13411 MerR HTH family regulatory protein VS_2952 PF02844 Phosphoribosylglycinamide synthetase, N domain VS_2952 PF02843 Phosphoribosylglycinamide synthetase, C domain VS_2952 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VS_2954 PF00216 Bacterial DNA-binding protein VS_2955 PF01595 Cyclin M transmembrane N-terminal domain VS_2955 PF00571 CBS domain VS_2956 PF04222 Protein of unknown function (DUF416) VS_2958 PF03167 Uracil DNA glycosylase superfamily VS_2959 PF01208 Uroporphyrinogen decarboxylase (URO-D) VS_2961 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VS_2962 PF04997 RNA polymerase Rpb1, domain 1 VS_2962 PF00623 RNA polymerase Rpb1, domain 2 VS_2962 PF04983 RNA polymerase Rpb1, domain 3 VS_2962 PF05000 RNA polymerase Rpb1, domain 4 VS_2962 PF04998 RNA polymerase Rpb1, domain 5 VS_2963 PF00562 RNA polymerase Rpb2, domain 6 VS_2963 PF04565 RNA polymerase Rpb2, domain 3 VS_2963 PF04561 RNA polymerase Rpb2, domain 2 VS_2963 PF04563 RNA polymerase beta subunit VS_2963 PF04560 RNA polymerase Rpb2, domain 7 VS_2963 PF10385 RNA polymerase beta subunit external 1 domain VS_2965 PF00466 Ribosomal protein L10 VS_2968 PF00298 Ribosomal protein L11, RNA binding domain VS_2968 PF03946 Ribosomal protein L11, N-terminal domain VS_2970 PF00467 KOW motif VS_2970 PF02357 Transcription termination factor nusG VS_2971 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VS_2972 PF00009 Elongation factor Tu GTP binding domain VS_2972 PF03143 Elongation factor Tu C-terminal domain VS_2972 PF03144 Elongation factor Tu domain 2 VS_2978 PF00485 Phosphoribulokinase / Uridine kinase family VS_2979 PF08279 HTH domain VS_2979 PF03099 Biotin/lipoate A/B protein ligase family VS_2979 PF02237 Biotin protein ligase C terminal domain VS_2980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VS_2980 PF01565 FAD binding domain VS_2982 PF13091 PLD-like domain VS_2983 PF13358 DDE superfamily endonuclease VS_2996 PF01177 Asp/Glu/Hydantoin racemase VS_2998 PF07715 TonB-dependent Receptor Plug Domain VS_2998 PF00593 TonB dependent receptor VS_3002 PF00440 Bacterial regulatory proteins, tetR family VS_3004 PF01554 MatE VS_3005 PF04072 Leucine carboxyl methyltransferase VS_3007 PF01219 Prokaryotic diacylglycerol kinase VS_3010 PF13276 HTH-like domain VS_3010 PF13333 Integrase core domain VS_3010 PF00665 Integrase core domain VS_3013 PF04345 Chorismate lyase VS_3015 PF03748 Flagellar basal body-associated protein FliL VS_3016 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VS_3016 PF01694 Rhomboid family VS_3018 PF04545 Sigma-70, region 4 VS_3018 PF04542 Sigma-70 region 2 VS_3018 PF00140 Sigma-70 factor, region 1.2 VS_3019 PF18075 FtsX extracellular domain VS_3020 PF00005 ABC transporter VS_3021 PF02881 SRP54-type protein, helical bundle domain VS_3021 PF00448 SRP54-type protein, GTPase domain VS_3021 PF02881 SRP54-type protein, helical bundle domain VS_3021 PF00448 SRP54-type protein, GTPase domain VS_3025 PF01914 MarC family integral membrane protein VS_3033 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_3033 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_3034 PF01022 Bacterial regulatory protein, arsR family VS_3035 PF08668 HDOD domain VS_3035 PF00563 EAL domain VS_3036 PF01810 LysE type translocator VS_3037 PF12146 Serine aminopeptidase, S33 VS_3042 PF08495 FIST N domain VS_3042 PF00563 EAL domain VS_3042 PF10442 FIST C domain VS_3042 PF00990 Diguanylate cyclase, GGDEF domain VS_3043 PF00563 EAL domain VS_3043 PF08495 FIST N domain VS_3043 PF10442 FIST C domain VS_3043 PF00990 Diguanylate cyclase, GGDEF domain VS_3044 PF13419 Haloacid dehalogenase-like hydrolase VS_3048 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_3048 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_3051 PF12633 Adenylate cyclase NT domain VS_3051 PF01295 Adenylate cyclase, class-I VS_3053 PF02602 Uroporphyrinogen-III synthase HemD VS_3054 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VS_3055 PF07219 HemY protein N-terminus VS_3067 PF00175 Oxidoreductase NAD-binding domain VS_3069 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VS_3071 PF07497 Rho termination factor, RNA-binding domain VS_3071 PF07498 Rho termination factor, N-terminal domain VS_3071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3072 PF00085 Thioredoxin VS_3075 PF02592 Putative vitamin uptake transporter VS_3077 PF09382 RQC domain VS_3077 PF16124 RecQ zinc-binding VS_3077 PF00570 HRDC domain VS_3077 PF00271 Helicase conserved C-terminal domain VS_3077 PF00270 DEAD/DEAH box helicase VS_3078 PF00892 EamA-like transporter family VS_3079 PF12833 Helix-turn-helix domain VS_3079 PF02311 AraC-like ligand binding domain VS_3080 PF01810 LysE type translocator VS_3083 PF08534 Redoxin VS_3084 PF00580 UvrD/REP helicase N-terminal domain VS_3084 PF13361 UvrD-like helicase C-terminal domain VS_3086 PF05114 Protein of unknown function (DUF692) VS_3090 PF07690 Major Facilitator Superfamily VS_3091 PF03466 LysR substrate binding domain VS_3091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_3092 PF01321 Creatinase/Prolidase N-terminal domain VS_3092 PF00557 Metallopeptidase family M24 VS_3092 PF01321 Creatinase/Prolidase N-terminal domain VS_3092 PF00557 Metallopeptidase family M24 VS_3093 PF04055 Radical SAM superfamily VS_3093 PF06968 Biotin and Thiamin Synthesis associated domain VS_3095 PF02597 ThiS family VS_3096 PF00899 ThiF family VS_3097 PF02581 Thiamine monophosphate synthase VS_3100 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VS_3101 PF00394 Multicopper oxidase VS_3101 PF07731 Multicopper oxidase VS_3101 PF07732 Multicopper oxidase VS_3115 PF00132 Bacterial transferase hexapeptide (six repeats) VS_3119 PF01300 Telomere recombination VS_3120 PF00731 AIR carboxylase VS_3121 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VS_3121 PF02222 ATP-grasp domain VS_3122 PF01396 Topoisomerase DNA binding C4 zinc finger VS_3124 PF17782 DprA winged helix domain VS_3124 PF02481 DNA recombination-mediator protein A VS_3126 PF01327 Polypeptide deformylase VS_3128 PF01029 NusB family VS_3128 PF01189 16S rRNA methyltransferase RsmB/F VS_3129 PF02254 TrkA-N domain VS_3129 PF02080 TrkA-C domain VS_3131 PF02386 Cation transport protein VS_3133 PF03006 Haemolysin-III related VS_3134 PF07070 SpoOM protein VS_3136 PF06288 Protein of unknown function (DUF1040) VS_3138 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VS_3138 PF12801 4Fe-4S binding domain VS_3138 PF13746 4Fe-4S dicluster domain VS_3139 PF01636 Phosphotransferase enzyme family VS_3140 PF01323 DSBA-like thioredoxin domain VS_3142 PF01078 Magnesium chelatase, subunit ChlI VS_3142 PF13335 Magnesium chelatase, subunit ChlI C-terminal VS_3143 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_3143 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_3143 PF00205 Thiamine pyrophosphate enzyme, central domain VS_3145 PF01063 Amino-transferase class IV VS_3147 PF00585 C-terminal regulatory domain of Threonine dehydratase VS_3147 PF00291 Pyridoxal-phosphate dependent enzyme VS_3148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_3148 PF03466 LysR substrate binding domain VS_3149 PF07690 Major Facilitator Superfamily VS_3150 PF12804 MobA-like NTP transferase domain VS_3150 PF00132 Bacterial transferase hexapeptide (six repeats) VS_3151 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VS_3151 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VS_3152 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_3152 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3153 PF00231 ATP synthase VS_3154 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3154 PF00306 ATP synthase alpha/beta chain, C terminal domain VS_3154 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_3156 PF00430 ATP synthase B/B' CF(0) VS_3157 PF00137 ATP synthase subunit C VS_3158 PF00119 ATP synthase A chain VS_3159 PF03899 ATP synthase I chain VS_3160 PF17762 HTH domain found in ParB protein VS_3160 PF02195 ParB-like nuclease domain VS_3161 PF13614 AAA domain VS_II0001 PF18607 ParA helix turn helix domain VS_II0001 PF13614 AAA domain VS_II0002 PF02195 ParB-like nuclease domain VS_II0002 PF08775 ParB family VS_II0003 PF13718 GNAT acetyltransferase 2 VS_II0003 PF05127 Helicase VS_II0005 PF00005 ABC transporter VS_II0005 PF03412 Peptidase C39 family VS_II0005 PF00664 ABC transporter transmembrane region VS_II0008 PF00529 HlyD membrane-fusion protein of T1SS VS_II0009 PF00158 Sigma-54 interaction domain VS_II0009 PF00072 Response regulator receiver domain VS_II0009 PF02954 Bacterial regulatory protein, Fis family VS_II0010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0010 PF02743 Cache domain VS_II0010 PF00512 His Kinase A (phospho-acceptor) domain VS_II0012 PF00072 Response regulator receiver domain VS_II0012 PF00196 Bacterial regulatory proteins, luxR family VS_II0014 PF03781 Sulfatase-modifying factor enzyme 1 VS_II0018 PF12833 Helix-turn-helix domain VS_II0019 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VS_II0019 PF00171 Aldehyde dehydrogenase family VS_II0019 PF14850 DNA-binding domain of Proline dehydrogenase VS_II0019 PF01619 Proline dehydrogenase VS_II0021 PF00474 Sodium:solute symporter family VS_II0024 PF01037 Lrp/AsnC ligand binding domain VS_II0025 PF04286 Protein of unknown function (DUF445) VS_II0026 PF00005 ABC transporter VS_II0026 PF00664 ABC transporter transmembrane region VS_II0031 PF08019 Phosphoethanolamine transferase EptA/EptB VS_II0031 PF00884 Sulfatase VS_II0034 PF01418 Helix-turn-helix domain, rpiR family VS_II0034 PF02685 Glucokinase VS_II0034 PF01380 SIS domain VS_II0036 PF07969 Amidohydrolase family VS_II0038 PF00474 Sodium:solute symporter family VS_II0039 PF00294 pfkB family carbohydrate kinase VS_II0040 PF01081 KDPG and KHG aldolase VS_II0041 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_II0041 PF02838 Glycosyl hydrolase family 20, domain 2 VS_II0042 PF06291 Bor protein VS_II0043 PF00672 HAMP domain VS_II0043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0043 PF00512 His Kinase A (phospho-acceptor) domain VS_II0044 PF00486 Transcriptional regulatory protein, C terminal VS_II0044 PF00072 Response regulator receiver domain VS_II0045 PF03707 Bacterial signalling protein N terminal repeat VS_II0045 PF00990 Diguanylate cyclase, GGDEF domain VS_II0045 PF00563 EAL domain VS_II0048 PF00291 Pyridoxal-phosphate dependent enzyme VS_II0049 PF01037 Lrp/AsnC ligand binding domain VS_II0051 PF07687 Peptidase dimerisation domain VS_II0051 PF01546 Peptidase family M20/M25/M40 VS_II0052 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0054 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_II0055 PF00557 Metallopeptidase family M24 VS_II0055 PF01321 Creatinase/Prolidase N-terminal domain VS_II0058 PF00732 GMC oxidoreductase VS_II0058 PF05199 GMC oxidoreductase VS_II0059 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_II0060 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0061 PF00005 ABC transporter VS_II0061 PF00571 CBS domain VS_II0062 PF01047 MarR family VS_II0066 PF00583 Acetyltransferase (GNAT) family VS_II0067 PF00202 Aminotransferase class-III VS_II0069 PF13840 ACT domain VS_II0069 PF00696 Amino acid kinase family VS_II0072 PF14602 Hexapeptide repeat of succinyl-transferase VS_II0072 PF12464 Maltose acetyltransferase VS_II0074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0074 PF03466 LysR substrate binding domain VS_II0079 PF02965 Vitamin B12 dependent methionine synthase, activation domain VS_II0079 PF02574 Homocysteine S-methyltransferase VS_II0079 PF02310 B12 binding domain VS_II0079 PF02607 B12 binding domain VS_II0079 PF00809 Pterin binding enzyme VS_II0089 PF00106 short chain dehydrogenase VS_II0090 PF13276 HTH-like domain VS_II0090 PF13333 Integrase core domain VS_II0090 PF00665 Integrase core domain VS_II0092 PF14864 Alkyl sulfatase C-terminal VS_II0092 PF00753 Metallo-beta-lactamase superfamily VS_II0092 PF14863 Alkyl sulfatase dimerisation VS_II0093 PF03466 LysR substrate binding domain VS_II0093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0097 PF00232 Glycosyl hydrolase family 1 VS_II0098 PF00356 Bacterial regulatory proteins, lacI family VS_II0099 PF12464 Maltose acetyltransferase VS_II0099 PF14602 Hexapeptide repeat of succinyl-transferase VS_II0100 PF07690 Major Facilitator Superfamily VS_II0101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0101 PF03466 LysR substrate binding domain VS_II0105 PF01872 RibD C-terminal domain VS_II0107 PF13091 PLD-like domain VS_II0108 PF00881 Nitroreductase family VS_II0109 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II0109 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II0110 PF03466 LysR substrate binding domain VS_II0110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0113 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VS_II0113 PF01266 FAD dependent oxidoreductase VS_II0114 PF08220 DeoR-like helix-turn-helix domain VS_II0114 PF00455 DeoR C terminal sensor domain VS_II0116 PF00230 Major intrinsic protein VS_II0118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0118 PF03466 LysR substrate binding domain VS_II0119 PF01758 Sodium Bile acid symporter family VS_II0123 PF06224 Winged helix DNA-binding domain VS_II0124 PF03466 LysR substrate binding domain VS_II0124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0126 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VS_II0126 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VS_II0130 PF13419 Haloacid dehalogenase-like hydrolase VS_II0131 PF00834 Ribulose-phosphate 3 epimerase family VS_II0134 PF07690 Major Facilitator Superfamily VS_II0136 PF01261 Xylose isomerase-like TIM barrel VS_II0137 PF01614 Bacterial transcriptional regulator VS_II0137 PF09339 IclR helix-turn-helix domain VS_II0138 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_II0139 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VS_II0139 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VS_II0142 PF00596 Class II Aldolase and Adducin N-terminal domain VS_II0143 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0144 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_II0145 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VS_II0146 PF02615 Malate/L-lactate dehydrogenase VS_II0147 PF02595 Glycerate kinase family VS_II0148 PF06628 Catalase-related immune-responsive VS_II0148 PF00199 Catalase VS_II0149 PF01734 Patatin-like phospholipase VS_II0150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_II0150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_II0152 PF00175 Oxidoreductase NAD-binding domain VS_II0152 PF00970 Oxidoreductase FAD-binding domain VS_II0153 PF01553 Acyltransferase VS_II0155 PF04816 tRNA (adenine(22)-N(1))-methyltransferase VS_II0157 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0157 PF00128 Alpha amylase, catalytic domain VS_II0158 PF02264 LamB porin VS_II0162 PF01547 Bacterial extracellular solute-binding protein VS_II0163 PF00128 Alpha amylase, catalytic domain VS_II0163 PF16657 Maltogenic Amylase, C-terminal domain VS_II0167 PF02903 Alpha amylase, N-terminal ig-like domain VS_II0167 PF00128 Alpha amylase, catalytic domain VS_II0167 PF16657 Maltogenic Amylase, C-terminal domain VS_II0168 PF17967 Pullulanase N2 domain VS_II0168 PF18494 Pullulanase Ins domain VS_II0168 PF03714 Bacterial pullanase-associated domain VS_II0168 PF11852 Domain of unknown function (DUF3372) VS_II0168 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0170 PF01810 LysE type translocator VS_II0171 PF01037 Lrp/AsnC ligand binding domain VS_II0172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0172 PF03466 LysR substrate binding domain VS_II0175 PF00375 Sodium:dicarboxylate symporter family VS_II0177 PF03193 RsgA GTPase VS_II0179 PF02630 SCO1/SenC VS_II0183 PF00196 Bacterial regulatory proteins, luxR family VS_II0183 PF17874 MalT-like TPR region VS_II0184 PF00343 Carbohydrate phosphorylase VS_II0185 PF02446 4-alpha-glucanotransferase VS_II0186 PF00128 Alpha amylase, catalytic domain VS_II0186 PF02806 Alpha amylase, C-terminal all-beta domain VS_II0186 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0188 PF00005 ABC transporter VS_II0188 PF12558 ATP-binding cassette cobalt transporter VS_II0190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_II0190 PF00529 HlyD membrane-fusion protein of T1SS VS_II0191 PF11742 Protein of unknown function (DUF3302) VS_II0193 PF00990 Diguanylate cyclase, GGDEF domain VS_II0197 PF01048 Phosphorylase superfamily VS_II0198 PF01476 LysM domain VS_II0198 PF17969 L,D-transpeptidase C-terminal domain VS_II0198 PF03734 L,D-transpeptidase catalytic domain VS_II0200 PF00270 DEAD/DEAH box helicase VS_II0200 PF00271 Helicase conserved C-terminal domain VS_II0201 PF00657 GDSL-like Lipase/Acylhydrolase VS_II0202 PF00561 alpha/beta hydrolase fold VS_II0203 PF03280 Proteobacterial lipase chaperone protein VS_II0204 PF17200 Single Cache domain 2 VS_II0204 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0204 PF00672 HAMP domain VS_II0205 PF12849 PBP superfamily domain VS_II0206 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0207 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0208 PF00005 ABC transporter VS_II0209 PF17151 Periplasmic sensor domain VS_II0209 PF00990 Diguanylate cyclase, GGDEF domain VS_II0211 PF07584 Aerotolerance regulator N-terminal VS_II0211 PF00092 von Willebrand factor type A domain VS_II0212 PF00092 von Willebrand factor type A domain VS_II0212 PF07584 Aerotolerance regulator N-terminal VS_II0214 PF01882 Protein of unknown function DUF58 VS_II0215 PF17863 AAA lid domain VS_II0215 PF07726 ATPase family associated with various cellular activities (AAA) VS_II0216 PF02743 Cache domain VS_II0216 PF00672 HAMP domain VS_II0216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0219 PF08402 TOBE domain VS_II0219 PF00005 ABC transporter VS_II0220 PF01547 Bacterial extracellular solute-binding protein VS_II0221 PF14785 Maltose transport system permease protein MalF P2 domain VS_II0221 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0222 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0231 PF00924 Mechanosensitive ion channel VS_II0232 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0232 PF03466 LysR substrate binding domain VS_II0235 PF01914 MarC family integral membrane protein VS_II0236 PF03448 MgtE intracellular N domain VS_II0236 PF01769 Divalent cation transporter VS_II0236 PF00571 CBS domain VS_II0239 PF01699 Sodium/calcium exchanger protein VS_II0240 PF07549 SecD/SecF GG Motif VS_II0240 PF02355 Protein export membrane protein VS_II0241 PF02355 Protein export membrane protein VS_II0241 PF07549 SecD/SecF GG Motif VS_II0241 PF13721 SecD export protein N-terminal TM region VS_II0243 PF04231 Endonuclease I VS_II0247 PF00005 ABC transporter VS_II0248 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_II0249 PF03707 Bacterial signalling protein N terminal repeat VS_II0249 PF13188 PAS domain VS_II0249 PF00563 EAL domain VS_II0249 PF00990 Diguanylate cyclase, GGDEF domain VS_II0252 PF02310 B12 binding domain VS_II0252 PF04055 Radical SAM superfamily VS_II0259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0259 PF03466 LysR substrate binding domain VS_II0260 PF00072 Response regulator receiver domain VS_II0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0264 PF00463 Isocitrate lyase family VS_II0265 PF03466 LysR substrate binding domain VS_II0265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0266 PF01274 Malate synthase VS_II0267 PF00171 Aldehyde dehydrogenase family VS_II0269 PF02028 BCCT, betaine/carnitine/choline family transporter VS_II0271 PF00072 Response regulator receiver domain VS_II0271 PF00990 Diguanylate cyclase, GGDEF domain VS_II0274 PF03476 MOSC N-terminal beta barrel domain VS_II0274 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_II0274 PF03473 MOSC domain VS_II0276 PF01467 Cytidylyltransferase-like VS_II0284 PF00005 ABC transporter VS_II0285 PF01032 FecCD transport family VS_II0287 PF02472 Biopolymer transport protein ExbD/TolR VS_II0288 PF01618 MotA/TolQ/ExbB proton channel family VS_II0289 PF03544 Gram-negative bacterial TonB protein C-terminal VS_II0290 PF04055 Radical SAM superfamily VS_II0291 PF06228 Haem utilisation ChuX/HutX VS_II0292 PF01243 Pyridoxamine 5'-phosphate oxidase VS_II0293 PF00072 Response regulator receiver domain VS_II0293 PF01584 CheW-like domain VS_II0295 PF00128 Alpha amylase, catalytic domain VS_II0296 PF02743 Cache domain VS_II0296 PF00672 HAMP domain VS_II0296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0302 PF08525 Opacity-associated protein A N-terminal motif VS_II0302 PF01476 LysM domain VS_II0302 PF01551 Peptidase family M23 VS_II0303 PF08447 PAS fold VS_II0303 PF08448 PAS fold VS_II0303 PF00990 Diguanylate cyclase, GGDEF domain VS_II0303 PF00563 EAL domain VS_II0304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0304 PF03466 LysR substrate binding domain VS_II0305 PF07690 Major Facilitator Superfamily VS_II0308 PF00462 Glutaredoxin VS_II0309 PF00892 EamA-like transporter family VS_II0310 PF13609 Gram-negative porin VS_II0312 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II0313 PF03611 PTS system sugar-specific permease component VS_II0314 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II0316 PF07670 Nucleoside recognition VS_II0316 PF01773 Na+ dependent nucleoside transporter N-terminus VS_II0316 PF07662 Na+ dependent nucleoside transporter C-terminus VS_II0320 PF00990 Diguanylate cyclase, GGDEF domain VS_II0320 PF03707 Bacterial signalling protein N terminal repeat VS_II0320 PF00563 EAL domain VS_II0321 PF00270 DEAD/DEAH box helicase VS_II0321 PF00271 Helicase conserved C-terminal domain VS_II0325 PF00990 Diguanylate cyclase, GGDEF domain VS_II0326 PF00313 'Cold-shock' DNA-binding domain VS_II0327 PF07969 Amidohydrolase family VS_II0328 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VS_II0329 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VS_II0334 PF12833 Helix-turn-helix domain VS_II0334 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VS_II0335 PF03253 Urea transporter VS_II0337 PF00392 Bacterial regulatory proteins, gntR family VS_II0337 PF00155 Aminotransferase class I and II VS_II0338 PF13520 Amino acid permease VS_II0339 PF01037 Lrp/AsnC ligand binding domain VS_II0340 PF03466 LysR substrate binding domain VS_II0340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0341 PF01810 LysE type translocator VS_II0345 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_II0345 PF00175 Oxidoreductase NAD-binding domain VS_II0345 PF00970 Oxidoreductase FAD-binding domain VS_II0346 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_II0346 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_II0348 PF00512 His Kinase A (phospho-acceptor) domain VS_II0348 PF00672 HAMP domain VS_II0348 PF00072 Response regulator receiver domain VS_II0348 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_II0348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0348 PF01627 Hpt domain VS_II0354 PF01541 GIY-YIG catalytic domain VS_II0355 PF13407 Periplasmic binding protein domain VS_II0356 PF00072 Response regulator receiver domain VS_II0356 PF09308 LuxQ, periplasmic VS_II0356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0356 PF00512 His Kinase A (phospho-acceptor) domain VS_II0360 PF00012 Hsp70 protein VS_II0362 PF01557 Fumarylacetoacetate (FAA) hydrolase family VS_II0363 PF01810 LysE type translocator VS_II0364 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_II0364 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_II0364 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_II0364 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_II0365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VS_II0365 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VS_II0366 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_II0367 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VS_II0368 PF00510 Cytochrome c oxidase subunit III VS_II0371 PF02628 Cytochrome oxidase assembly protein VS_II0373 PF01040 UbiA prenyltransferase family VS_II0376 PF12843 Putative quorum-sensing-regulated virulence factor VS_II0381 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VS_II0382 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VS_II0387 PF00793 DAHP synthetase I family VS_II0388 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_II0388 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_II0388 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_II0388 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_II0389 PF01050 Mannose-6-phosphate isomerase VS_II0389 PF00483 Nucleotidyl transferase VS_II0390 PF00924 Mechanosensitive ion channel VS_II0391 PF02254 TrkA-N domain VS_II0391 PF02080 TrkA-C domain VS_II0392 PF02386 Cation transport protein VS_II0393 PF01641 SelR domain VS_II0393 PF01625 Peptide methionine sulfoxide reductase VS_II0394 PF02566 OsmC-like protein VS_II0395 PF13488 Glycine zipper VS_II0395 PF00691 OmpA family VS_II0396 PF13419 Haloacid dehalogenase-like hydrolase VS_II0398 PF00266 Aminotransferase class-V VS_II0400 PF01266 FAD dependent oxidoreductase VS_II0401 PF00005 ABC transporter VS_II0402 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0403 PF00392 Bacterial regulatory proteins, gntR family VS_II0403 PF07702 UTRA domain VS_II0405 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0407 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_II0408 PF01202 Shikimate kinase VS_II0409 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_II0409 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VS_II0410 PF03575 Peptidase family S51 VS_II0411 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II0411 PF00356 Bacterial regulatory proteins, lacI family VS_II0413 PF00854 POT family VS_II0414 PF03315 Serine dehydratase beta chain VS_II0414 PF03313 Serine dehydratase alpha chain VS_II0417 PF08264 Anticodon-binding domain of tRNA VS_II0417 PF00133 tRNA synthetases class I (I, L, M and V) VS_II0421 PF00664 ABC transporter transmembrane region VS_II0421 PF00005 ABC transporter VS_II0422 PF00005 ABC transporter VS_II0422 PF00664 ABC transporter transmembrane region VS_II0424 PF01551 Peptidase family M23 VS_II0424 PF08525 Opacity-associated protein A N-terminal motif VS_II0424 PF01476 LysM domain VS_II0425 PF01906 Putative heavy-metal-binding VS_II0426 PF03466 LysR substrate binding domain VS_II0426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0428 PF01966 HD domain VS_II0433 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0434 PF03466 LysR substrate binding domain VS_II0435 PF07690 Major Facilitator Superfamily VS_II0436 PF00155 Aminotransferase class I and II VS_II0440 PF02254 TrkA-N domain VS_II0440 PF00999 Sodium/hydrogen exchanger family VS_II0441 PF02525 Flavodoxin-like fold VS_II0445 PF00465 Iron-containing alcohol dehydrogenase VS_II0447 PF13419 Haloacid dehalogenase-like hydrolase VS_II0448 PF00892 EamA-like transporter family VS_II0449 PF01590 GAF domain VS_II0449 PF00990 Diguanylate cyclase, GGDEF domain VS_II0449 PF00360 Phytochrome region VS_II0449 PF00563 EAL domain VS_II0452 PF03466 LysR substrate binding domain VS_II0452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0454 PF11230 Protein of unknown function (DUF3029) VS_II0455 PF04055 Radical SAM superfamily VS_II0456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0456 PF03466 LysR substrate binding domain VS_II0460 PF12805 FUSC-like inner membrane protein yccS VS_II0461 PF00580 UvrD/REP helicase N-terminal domain VS_II0461 PF13361 UvrD-like helicase C-terminal domain VS_II0461 PF12462 DNA helicase IV / RNA helicase N terminal VS_II0463 PF02780 Transketolase, C-terminal domain VS_II0463 PF02779 Transketolase, pyrimidine binding domain VS_II0463 PF00456 Transketolase, thiamine diphosphate binding domain VS_II0464 PF00923 Transaldolase/Fructose-6-phosphate aldolase VS_II0467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0467 PF03466 LysR substrate binding domain VS_II0471 PF13629 Pilus formation protein N terminal region VS_II0471 PF04972 BON domain VS_II0471 PF00263 Bacterial type II and III secretion system protein VS_II0474 PF00437 Type II/IV secretion system protein VS_II0482 PF00360 Phytochrome region VS_II0482 PF01590 GAF domain VS_II0482 PF00990 Diguanylate cyclase, GGDEF domain VS_II0482 PF00563 EAL domain VS_II0483 PF00581 Rhodanese-like domain VS_II0489 PF00899 ThiF family VS_II0490 PF03454 MoeA C-terminal region (domain IV) VS_II0490 PF00994 Probable molybdopterin binding domain VS_II0490 PF03453 MoeA N-terminal region (domain I and II) VS_II0491 PF01227 GTP cyclohydrolase I VS_II0492 PF03577 Peptidase family C69 VS_II0494 PF07152 YaeQ protein VS_II0495 PF00313 'Cold-shock' DNA-binding domain VS_II0496 PF07995 Glucose / Sorbosone dehydrogenase VS_II0497 PF07690 Major Facilitator Superfamily VS_II0498 PF00005 ABC transporter VS_II0500 PF12833 Helix-turn-helix domain VS_II0501 PF07715 TonB-dependent Receptor Plug Domain VS_II0501 PF00593 TonB dependent receptor VS_II0503 PF01032 FecCD transport family VS_II0504 PF00378 Enoyl-CoA hydratase/isomerase VS_II0507 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II0507 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II0508 PF00132 Bacterial transferase hexapeptide (six repeats) VS_II0510 PF00664 ABC transporter transmembrane region VS_II0510 PF00005 ABC transporter VS_II0511 PF00529 HlyD membrane-fusion protein of T1SS VS_II0515 PF00529 HlyD membrane-fusion protein of T1SS VS_II0515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_II0516 PF00873 AcrB/AcrD/AcrF family VS_II0524 PF08274 PhnA Zinc-Ribbon VS_II0524 PF03831 PhnA domain VS_II0528 PF12833 Helix-turn-helix domain VS_II0529 PF07715 TonB-dependent Receptor Plug Domain VS_II0529 PF04886 PT repeat VS_II0529 PF00593 TonB dependent receptor VS_II0531 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0533 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0534 PF00005 ABC transporter VS_II0535 PF00465 Iron-containing alcohol dehydrogenase VS_II0536 PF12833 Helix-turn-helix domain VS_II0536 PF06719 AraC-type transcriptional regulator N-terminus VS_II0537 PF01042 Endoribonuclease L-PSP VS_II0542 PF13302 Acetyltransferase (GNAT) domain VS_II0543 PF04224 Protein of unknown function, DUF417 VS_II0544 PF01042 Endoribonuclease L-PSP VS_II0545 PF02028 BCCT, betaine/carnitine/choline family transporter VS_II0546 PF06483 Chitinase C VS_II0546 PF00704 Glycosyl hydrolases family 18 VS_II0547 PF00990 Diguanylate cyclase, GGDEF domain VS_II0547 PF07694 5TMR of 5TMR-LYT VS_II0550 PF07943 Penicillin-binding protein 5, C-terminal domain VS_II0550 PF00768 D-alanyl-D-alanine carboxypeptidase VS_II0552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0552 PF03466 LysR substrate binding domain VS_II0554 PF00849 RNA pseudouridylate synthase VS_II0556 PF16884 N-terminal domain of oxidoreductase VS_II0556 PF00107 Zinc-binding dehydrogenase VS_II0557 PF00440 Bacterial regulatory proteins, tetR family VS_II0557 PF16925 Tetracyclin repressor-like, C-terminal domain VS_II0558 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_II0558 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_II0561 PF00691 OmpA family VS_II0561 PF04972 BON domain VS_II0563 PF00158 Sigma-54 interaction domain VS_II0563 PF01590 GAF domain VS_II0564 PF00970 Oxidoreductase FAD-binding domain VS_II0564 PF00175 Oxidoreductase NAD-binding domain VS_II0564 PF00042 Globin VS_II0566 PF00654 Voltage gated chloride channel VS_II0567 PF02492 CobW/HypB/UreG, nucleotide-binding domain VS_II0567 PF07683 Cobalamin synthesis protein cobW C-terminal domain VS_II0568 PF00270 DEAD/DEAH box helicase VS_II0568 PF00271 Helicase conserved C-terminal domain VS_II0569 PF01810 LysE type translocator VS_II0575 PF00486 Transcriptional regulatory protein, C terminal VS_II0575 PF00072 Response regulator receiver domain VS_II0576 PF00512 His Kinase A (phospho-acceptor) domain VS_II0576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0580 PF01037 Lrp/AsnC ligand binding domain VS_II0584 PF00106 short chain dehydrogenase VS_II0585 PF02803 Thiolase, C-terminal domain VS_II0585 PF00108 Thiolase, N-terminal domain VS_II0587 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VS_II0587 PF00561 alpha/beta hydrolase fold VS_II0589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0589 PF00512 His Kinase A (phospho-acceptor) domain VS_II0590 PF00486 Transcriptional regulatory protein, C terminal VS_II0590 PF00072 Response regulator receiver domain VS_II0591 PF00873 AcrB/AcrD/AcrF family VS_II0593 PF02321 Outer membrane efflux protein VS_II0594 PF01966 HD domain VS_II0594 PF11871 Domain of unknown function (DUF3391) VS_II0596 PF03264 NapC/NirT cytochrome c family, N-terminal region VS_II0597 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VS_II0601 PF00672 HAMP domain VS_II0601 PF07730 Histidine kinase VS_II0601 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VS_II0601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0602 PF00072 Response regulator receiver domain VS_II0602 PF00196 Bacterial regulatory proteins, luxR family VS_II0603 PF03606 C4-dicarboxylate anaerobic carrier VS_II0604 PF00392 Bacterial regulatory proteins, gntR family VS_II0604 PF07702 UTRA domain VS_II0605 PF02378 Phosphotransferase system, EIIC VS_II0605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II0605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II0606 PF09261 Alpha mannosidase middle domain VS_II0606 PF01074 Glycosyl hydrolases family 38 N-terminal domain VS_II0606 PF07748 Glycosyl hydrolases family 38 C-terminal domain VS_II0607 PF02595 Glycerate kinase family VS_II0608 PF01238 Phosphomannose isomerase type I VS_II0612 PF01926 50S ribosome-binding GTPase VS_II0617 PF00171 Aldehyde dehydrogenase family VS_II0620 PF12833 Helix-turn-helix domain VS_II0620 PF02311 AraC-like ligand binding domain VS_II0625 PF08534 Redoxin VS_II0626 PF08534 Redoxin VS_II0629 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0629 PF12793 Sugar transport-related sRNA regulator N-term VS_II0631 PF00196 Bacterial regulatory proteins, luxR family VS_II0638 PF01212 Beta-eliminating lyase VS_II0639 PF00293 NUDIX domain VS_II0640 PF17868 AAA lid domain VS_II0640 PF07728 AAA domain (dynein-related subfamily) VS_II0640 PF12592 Protein of unknown function (DUF3763) VS_II0641 PF05762 VWA domain containing CoxE-like protein VS_II0656 PF03150 Di-haem cytochrome c peroxidase VS_II0657 PF03150 Di-haem cytochrome c peroxidase VS_II0657 PF00034 Cytochrome c VS_II0659 PF01568 Molydopterin dinucleotide binding domain VS_II0659 PF18465 Rieske 3Fe-4S VS_II0659 PF00384 Molybdopterin oxidoreductase VS_II0666 PF02371 Transposase IS116/IS110/IS902 family VS_II0666 PF01548 Transposase VS_II0668 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_II0668 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_II0668 PF04324 BFD-like [2Fe-2S] binding domain VS_II0668 PF18267 Rubredoxin NAD+ reductase C-terminal domain VS_II0668 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II0669 PF13806 Rieske-like [2Fe-2S] domain VS_II0670 PF01226 Formate/nitrite transporter VS_II0674 PF00486 Transcriptional regulatory protein, C terminal VS_II0674 PF00072 Response regulator receiver domain VS_II0675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0675 PF00512 His Kinase A (phospho-acceptor) domain VS_II0675 PF00672 HAMP domain VS_II0675 PF16527 Two-component sensor protein CpxA, periplasmic domain VS_II0676 PF00375 Sodium:dicarboxylate symporter family VS_II0677 PF00593 TonB dependent receptor VS_II0677 PF07715 TonB-dependent Receptor Plug Domain VS_II0679 PF01618 MotA/TolQ/ExbB proton channel family VS_II0680 PF01618 MotA/TolQ/ExbB proton channel family VS_II0681 PF02472 Biopolymer transport protein ExbD/TolR VS_II0690 PF01297 Zinc-uptake complex component A periplasmic VS_II0691 PF00005 ABC transporter VS_II0692 PF00950 ABC 3 transport family VS_II0696 PF11756 Nitrous oxide-stimulated promoter VS_II0697 PF01554 MatE VS_II0701 PF07690 Major Facilitator Superfamily VS_II0703 PF00732 GMC oxidoreductase VS_II0703 PF05199 GMC oxidoreductase VS_II0704 PF00085 Thioredoxin VS_II0705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VS_II0705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VS_II0707 PF04143 Sulphur transport VS_II0711 PF03477 ATP cone domain VS_II0711 PF13597 Anaerobic ribonucleoside-triphosphate reductase VS_II0713 PF01554 MatE VS_II0714 PF12833 Helix-turn-helix domain VS_II0715 PF00155 Aminotransferase class I and II VS_II0716 PF08443 RimK-like ATP-grasp domain VS_II0716 PF18030 RimK PreATP-grasp domain VS_II0718 PF12848 ABC transporter VS_II0718 PF00005 ABC transporter VS_II0719 PF02743 Cache domain VS_II0719 PF00672 HAMP domain VS_II0719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0722 PF07685 CobB/CobQ-like glutamine amidotransferase domain VS_II0722 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_II0724 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0725 PF00005 ABC transporter VS_II0725 PF03459 TOBE domain VS_II0727 PF00563 EAL domain VS_II0727 PF01590 GAF domain VS_II0727 PF00990 Diguanylate cyclase, GGDEF domain VS_II0727 PF00360 Phytochrome region VS_II0729 PF17158 Membrane-associated sensor, integral membrane domain VS_II0729 PF00990 Diguanylate cyclase, GGDEF domain VS_II0732 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VS_II0732 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VS_II0732 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VS_II0733 PF02233 NAD(P) transhydrogenase beta subunit VS_II0736 PF00486 Transcriptional regulatory protein, C terminal VS_II0736 PF00072 Response regulator receiver domain VS_II0739 PF03701 Uncharacterised protein family (UPF0181) VS_II0741 PF00990 Diguanylate cyclase, GGDEF domain VS_II0741 PF08448 PAS fold VS_II0743 PF01253 Translation initiation factor SUI1 VS_II0747 PF05036 Sporulation related domain VS_II0748 PF13380 CoA binding domain VS_II0748 PF13607 Succinyl-CoA ligase like flavodoxin domain VS_II0748 PF00583 Acetyltransferase (GNAT) family VS_II0749 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0749 PF03466 LysR substrate binding domain VS_II0751 PF00593 TonB dependent receptor VS_II0751 PF07715 TonB-dependent Receptor Plug Domain VS_II0751 PF04886 PT repeat VS_II0752 PF16363 GDP-mannose 4,6 dehydratase VS_II0753 PF03746 LamB/YcsF family VS_II0754 PF02682 Carboxyltransferase domain, subdomain C and D VS_II0755 PF02626 Carboxyltransferase domain, subdomain A and B VS_II0758 PF00005 ABC transporter VS_II0759 PF13472 GDSL-like Lipase/Acylhydrolase family VS_II0760 PF07055 Enoyl reductase FAD binding domain VS_II0760 PF12241 Trans-2-enoyl-CoA reductase catalytic region VS_II0760 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VS_II0761 PF00498 FHA domain VS_II0761 PF00563 EAL domain VS_II0761 PF00990 Diguanylate cyclase, GGDEF domain VS_II0763 PF00905 Penicillin binding protein transpeptidase domain VS_II0763 PF03717 Penicillin-binding Protein dimerisation domain VS_II0764 PF00684 DnaJ central domain VS_II0764 PF01556 DnaJ C terminal domain VS_II0764 PF00226 DnaJ domain VS_II0765 PF03171 2OG-Fe(II) oxygenase superfamily VS_II0765 PF14226 non-haem dioxygenase in morphine synthesis N-terminal VS_II0767 PF00892 EamA-like transporter family VS_II0768 PF12793 Sugar transport-related sRNA regulator N-term VS_II0768 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0770 PF03061 Thioesterase superfamily VS_II0771 PF01435 Peptidase family M48 VS_II0773 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_II0774 PF12262 Bacterial virulence factor lipase N-terminal VS_II0776 PF00270 DEAD/DEAH box helicase VS_II0776 PF00271 Helicase conserved C-terminal domain VS_II0779 PF03741 Integral membrane protein TerC family VS_II0782 PF02872 5'-nucleotidase, C-terminal domain VS_II0782 PF00149 Calcineurin-like phosphoesterase VS_II0783 PF00149 Calcineurin-like phosphoesterase VS_II0783 PF02872 5'-nucleotidase, C-terminal domain VS_II0784 PF11398 Protein of unknown function (DUF2813) VS_II0785 PF06496 Protein of unknown function (DUF1097) VS_II0786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0786 PF03466 LysR substrate binding domain VS_II0787 PF01226 Formate/nitrite transporter VS_II0788 PF04264 YceI-like domain VS_II0789 PF01292 Prokaryotic cytochrome b561 VS_II0790 PF01292 Prokaryotic cytochrome b561 VS_II0794 PF00563 EAL domain VS_II0794 PF12792 CSS motif domain associated with EAL VS_II0795 PF00873 AcrB/AcrD/AcrF family VS_II0797 PF00529 HlyD membrane-fusion protein of T1SS VS_II0797 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_II0799 PF00270 DEAD/DEAH box helicase VS_II0799 PF00271 Helicase conserved C-terminal domain VS_II0800 PF04336 Acyl carrier protein phosphodiesterase VS_II0802 PF03222 Tryptophan/tyrosine permease family VS_II0803 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0804 PF13419 Haloacid dehalogenase-like hydrolase VS_II0805 PF11849 Domain of unknown function (DUF3369) VS_II0808 PF00294 pfkB family carbohydrate kinase VS_II0810 PF00990 Diguanylate cyclase, GGDEF domain VS_II0810 PF17158 Membrane-associated sensor, integral membrane domain VS_II0811 PF13419 Haloacid dehalogenase-like hydrolase VS_II0812 PF00472 RF-1 domain VS_II0816 PF08669 Glycine cleavage T-protein C-terminal barrel domain VS_II0816 PF01571 Aminomethyltransferase folate-binding domain VS_II0818 PF00464 Serine hydroxymethyltransferase VS_II0820 PF02347 Glycine cleavage system P-protein VS_II0823 PF00665 Integrase core domain VS_II0823 PF13276 HTH-like domain VS_II0823 PF13333 Integrase core domain VS_II0824 PF00665 Integrase core domain VS_II0824 PF13276 HTH-like domain VS_II0824 PF13333 Integrase core domain VS_II0827 PF01548 Transposase VS_II0827 PF02371 Transposase IS116/IS110/IS902 family VS_II0833 PF01554 MatE VS_II0834 PF01810 LysE type translocator VS_II0838 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0839 PF00579 tRNA synthetases class I (W and Y) VS_II0841 PF00291 Pyridoxal-phosphate dependent enzyme VS_II0843 PF01161 Phosphatidylethanolamine-binding protein VS_II0844 PF00672 HAMP domain VS_II0844 PF00989 PAS fold VS_II0844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0844 PF00512 His Kinase A (phospho-acceptor) domain VS_II0845 PF00486 Transcriptional regulatory protein, C terminal VS_II0845 PF00072 Response regulator receiver domain VS_II0848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0848 PF03466 LysR substrate binding domain VS_II0849 PF13533 Biotin-lipoyl like VS_II0850 PF07690 Major Facilitator Superfamily VS_II0853 PF04545 Sigma-70, region 4 VS_II0853 PF04539 Sigma-70 region 3 VS_II0853 PF04542 Sigma-70 region 2 VS_II0853 PF00140 Sigma-70 factor, region 1.2 VS_II0858 PF13533 Biotin-lipoyl like VS_II0859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0859 PF00072 Response regulator receiver domain VS_II0860 PF02321 Outer membrane efflux protein VS_II0861 PF00664 ABC transporter transmembrane region VS_II0861 PF00005 ABC transporter VS_II0862 PF00005 ABC transporter VS_II0864 PF01627 Hpt domain VS_II0864 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_II0864 PF00072 Response regulator receiver domain VS_II0864 PF00512 His Kinase A (phospho-acceptor) domain VS_II0864 PF00672 HAMP domain VS_II0864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0868 PF13186 Iron-sulfur cluster-binding domain VS_II0868 PF04055 Radical SAM superfamily VS_II0869 PF03781 Sulfatase-modifying factor enzyme 1 VS_II0871 PF03466 LysR substrate binding domain VS_II0871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0874 PF13519 von Willebrand factor type A domain VS_II0877 PF17863 AAA lid domain VS_II0877 PF07726 ATPase family associated with various cellular activities (AAA) VS_II0879 PF00884 Sulfatase VS_II0880 PF00884 Sulfatase VS_II0882 PF00583 Acetyltransferase (GNAT) family VS_II0883 PF02469 Fasciclin domain VS_II0887 PF02567 Phenazine biosynthesis-like protein VS_II0888 PF01810 LysE type translocator VS_II0890 PF03707 Bacterial signalling protein N terminal repeat VS_II0890 PF00990 Diguanylate cyclase, GGDEF domain VS_II0890 PF00563 EAL domain VS_II0894 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_II0896 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_II0896 PF00034 Cytochrome c VS_II0899 PF00561 alpha/beta hydrolase fold VS_II0902 PF02028 BCCT, betaine/carnitine/choline family transporter VS_II0904 PF00171 Aldehyde dehydrogenase family VS_II0906 PF03466 LysR substrate binding domain VS_II0906 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0908 PF00119 ATP synthase A chain VS_II0909 PF00137 ATP synthase subunit C VS_II0910 PF00430 ATP synthase B/B' CF(0) VS_II0912 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_II0912 PF00306 ATP synthase alpha/beta chain, C terminal domain VS_II0912 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_II0913 PF00231 ATP synthase VS_II0914 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_II0914 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_II0915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VS_II0915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VS_II0918 PF00873 AcrB/AcrD/AcrF family VS_II0919 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_II0919 PF00529 HlyD membrane-fusion protein of T1SS VS_II0920 PF02321 Outer membrane efflux protein VS_II0928 PF01979 Amidohydrolase family VS_II0932 PF00005 ABC transporter VS_II0932 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II0933 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_II0933 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0934 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0940 PF05025 RbsD / FucU transport protein family VS_II0941 PF00005 ABC transporter VS_II0942 PF02653 Branched-chain amino acid transport system / permease component VS_II0943 PF13407 Periplasmic binding protein domain VS_II0944 PF00294 pfkB family carbohydrate kinase VS_II0945 PF00356 Bacterial regulatory proteins, lacI family VS_II0947 PF03707 Bacterial signalling protein N terminal repeat VS_II0947 PF00990 Diguanylate cyclase, GGDEF domain VS_II0947 PF00563 EAL domain VS_II0948 PF01145 SPFH domain / Band 7 family VS_II0953 PF01568 Molydopterin dinucleotide binding domain VS_II0953 PF00384 Molybdopterin oxidoreductase VS_II0953 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_II0992 PF01037 Lrp/AsnC ligand binding domain VS_II0999 PF00069 Protein kinase domain VS_II0999 PF03793 PASTA domain VS_II1004 PF04717 Type VI secretion system, phage-baseplate injector VS_II1005 PF05638 Type VI secretion system effector, Hcp VS_II1006 PF07724 AAA domain (Cdc48 subfamily) VS_II1006 PF00004 ATPase family associated with various cellular activities (AAA) VS_II1006 PF10431 C-terminal, D2-small domain, of ClpB protein VS_II1006 PF17871 AAA lid domain VS_II1007 PF00158 Sigma-54 interaction domain VS_II1007 PF02954 Bacterial regulatory protein, Fis family VS_II1007 PF01590 GAF domain VS_II1010 PF00691 OmpA family VS_II1024 PF01551 Peptidase family M23 VS_II1026 PF01568 Molydopterin dinucleotide binding domain VS_II1026 PF00384 Molybdopterin oxidoreductase VS_II1026 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_II1027 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_II1027 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1027 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_II1027 PF04324 BFD-like [2Fe-2S] binding domain VS_II1027 PF18267 Rubredoxin NAD+ reductase C-terminal domain VS_II1029 PF07690 Major Facilitator Superfamily VS_II1030 PF00069 Protein kinase domain VS_II1030 PF03793 PASTA domain VS_II1031 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II1031 PF00356 Bacterial regulatory proteins, lacI family VS_II1032 PF00381 PTS HPr component phosphorylation site VS_II1032 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1033 PF00294 pfkB family carbohydrate kinase VS_II1034 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1034 PF02378 Phosphotransferase system, EIIC VS_II1037 PF00873 AcrB/AcrD/AcrF family VS_II1041 PF04116 Fatty acid hydroxylase superfamily VS_II1042 PF00072 Response regulator receiver domain VS_II1042 PF00486 Transcriptional regulatory protein, C terminal VS_II1046 PF02798 Glutathione S-transferase, N-terminal domain VS_II1048 PF01844 HNH endonuclease VS_II1051 PF08774 VRR-NUC domain VS_II1051 PF18081 Fanconi anemia-associated nuclease SAP domain VS_II1053 PF01627 Hpt domain VS_II1053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1053 PF00672 HAMP domain VS_II1053 PF17149 Periplasmic sensor domain found in signal transduction proteins VS_II1053 PF00072 Response regulator receiver domain VS_II1053 PF00512 His Kinase A (phospho-acceptor) domain VS_II1054 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II1056 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1056 PF08447 PAS fold VS_II1057 PF01037 Lrp/AsnC ligand binding domain VS_II1062 PF05547 Immune inhibitor A peptidase M6 VS_II1062 PF00801 PKD domain VS_II1063 PF07690 Major Facilitator Superfamily VS_II1064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1064 PF03466 LysR substrate binding domain VS_II1065 PF00072 Response regulator receiver domain VS_II1065 PF09308 LuxQ, periplasmic VS_II1065 PF00512 His Kinase A (phospho-acceptor) domain VS_II1065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1066 PF00072 Response regulator receiver domain VS_II1067 PF00005 ABC transporter VS_II1068 PF01032 FecCD transport family VS_II1070 PF01032 FecCD transport family VS_II1071 PF01497 Periplasmic binding protein VS_II1074 PF01594 AI-2E family transporter VS_II1076 PF13533 Biotin-lipoyl like VS_II1081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1081 PF03466 LysR substrate binding domain VS_II1083 PF02581 Thiamine monophosphate synthase VS_II1084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1084 PF00672 HAMP domain VS_II1084 PF02743 Cache domain VS_II1086 PF03070 TENA/THI-4/PQQC family VS_II1087 PF09084 NMT1/THI5 like VS_II1088 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1089 PF00005 ABC transporter VS_II1090 PF08543 Phosphomethylpyrimidine kinase VS_II1092 PF00892 EamA-like transporter family VS_II1097 PF02798 Glutathione S-transferase, N-terminal domain VS_II1097 PF00043 Glutathione S-transferase, C-terminal domain VS_II1102 PF09669 Phage regulatory protein Rha (Phage_pRha) VS_II1102 PF10549 ORF11CD3 domain VS_II1112 PF00072 Response regulator receiver domain VS_II1112 PF00196 Bacterial regulatory proteins, luxR family VS_II1114 PF01554 MatE VS_II1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1115 PF03466 LysR substrate binding domain VS_II1116 PF00892 EamA-like transporter family VS_II1120 PF00107 Zinc-binding dehydrogenase VS_II1120 PF08240 Alcohol dehydrogenase GroES-like domain VS_II1123 PF00005 ABC transporter VS_II1124 PF01032 FecCD transport family VS_II1125 PF01032 FecCD transport family VS_II1126 PF01497 Periplasmic binding protein VS_II1127 PF07660 Secretin and TonB N terminus short domain VS_II1127 PF07715 TonB-dependent Receptor Plug Domain VS_II1127 PF00593 TonB dependent receptor VS_II1128 PF07715 TonB-dependent Receptor Plug Domain VS_II1128 PF00593 TonB dependent receptor VS_II1129 PF02655 ATP-grasp domain VS_II1129 PF00206 Lyase VS_II1130 PF04183 IucA / IucC family VS_II1130 PF06276 Ferric iron reductase FhuF-like transporter VS_II1132 PF06276 Ferric iron reductase FhuF-like transporter VS_II1132 PF04183 IucA / IucC family VS_II1133 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_II1133 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_II1135 PF00871 Acetokinase family VS_II1137 PF03880 DbpA RNA binding domain VS_II1137 PF00271 Helicase conserved C-terminal domain VS_II1137 PF00270 DEAD/DEAH box helicase VS_II1139 PF12833 Helix-turn-helix domain VS_II1141 PF12849 PBP superfamily domain VS_II1142 PF01575 MaoC like domain VS_II1143 PF00873 AcrB/AcrD/AcrF family VS_II1144 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_II1145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_II1151 PF00248 Aldo/keto reductase family VS_II1152 PF00588 SpoU rRNA Methylase family VS_II1152 PF08032 RNA 2'-O ribose methyltransferase substrate binding VS_II1153 PF00037 4Fe-4S binding domain VS_II1153 PF11953 Domain of unknown function (DUF3470) VS_II1157 PF00881 Nitroreductase family VS_II1158 PF00270 DEAD/DEAH box helicase VS_II1158 PF00271 Helicase conserved C-terminal domain VS_II1160 PF02811 PHP domain VS_II1160 PF11490 DNA polymerase III polC-type N-terminus II VS_II1160 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_II1160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_II1160 PF14579 Helix-hairpin-helix motif VS_II1160 PF00929 Exonuclease VS_II1163 PF00271 Helicase conserved C-terminal domain VS_II1163 PF00270 DEAD/DEAH box helicase VS_II1163 PF03880 DbpA RNA binding domain VS_II1164 PF00248 Aldo/keto reductase family VS_II1172 PF05552 Conserved TM helix VS_II1172 PF00924 Mechanosensitive ion channel VS_II1175 PF11412 Disulphide bond corrector protein DsbC VS_II1175 PF02683 Cytochrome C biogenesis protein transmembrane region VS_II1177 PF00085 Thioredoxin VS_II1179 PF01966 HD domain VS_II1180 PF13302 Acetyltransferase (GNAT) domain VS_II1181 PF16527 Two-component sensor protein CpxA, periplasmic domain VS_II1181 PF00672 HAMP domain VS_II1181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1181 PF00512 His Kinase A (phospho-acceptor) domain VS_II1182 PF00072 Response regulator receiver domain VS_II1182 PF00486 Transcriptional regulatory protein, C terminal VS_II1184 PF00990 Diguanylate cyclase, GGDEF domain VS_II1184 PF13426 PAS domain VS_II1184 PF00563 EAL domain VS_II1186 PF00990 Diguanylate cyclase, GGDEF domain VS_II1186 PF00563 EAL domain VS_II1186 PF13426 PAS domain VS_II1187 PF07729 FCD domain VS_II1187 PF00392 Bacterial regulatory proteins, gntR family VS_II1188 PF00005 ABC transporter VS_II1194 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_II1194 PF01872 RibD C-terminal domain VS_II1196 PF00849 RNA pseudouridylate synthase VS_II1199 PF07690 Major Facilitator Superfamily VS_II1201 PF12833 Helix-turn-helix domain VS_II1204 PF12706 Beta-lactamase superfamily domain VS_II1205 PF12793 Sugar transport-related sRNA regulator N-term VS_II1205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1208 PF18030 RimK PreATP-grasp domain VS_II1208 PF08443 RimK-like ATP-grasp domain VS_II1211 PF13416 Bacterial extracellular solute-binding protein VS_II1213 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1214 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1215 PF00005 ABC transporter VS_II1215 PF17912 MalK OB fold domain VS_II1216 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_II1221 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VS_II1223 PF04399 Glutaredoxin 2, C terminal domain VS_II1223 PF13417 Glutathione S-transferase, N-terminal domain VS_II1225 PF02896 PEP-utilising enzyme, TIM barrel domain VS_II1225 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VS_II1225 PF00391 PEP-utilising enzyme, mobile domain VS_II1226 PF01554 MatE VS_II1227 PF13309 HTH domain VS_II1227 PF08348 YheO-like PAS domain VS_II1228 PF01042 Endoribonuclease L-PSP VS_II1229 PF00375 Sodium:dicarboxylate symporter family VS_II1230 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_II1250 PF00535 Glycosyl transferase family 2 VS_II1255 PF04542 Sigma-70 region 2 VS_II1255 PF08281 Sigma-70, region 4 VS_II1256 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VS_II1260 PF12729 Four helix bundle sensory module for signal transduction VS_II1260 PF00672 HAMP domain VS_II1260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1264 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1265 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1266 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1266 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_II1268 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II1268 PF00005 ABC transporter VS_II1271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1271 PF03466 LysR substrate binding domain VS_II1272 PF13460 NAD(P)H-binding VS_II1275 PF01638 HxlR-like helix-turn-helix VS_II1276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1276 PF03466 LysR substrate binding domain VS_II1277 PF00106 short chain dehydrogenase VS_II1278 PF03922 OmpW family VS_II1279 PF00483 Nucleotidyl transferase VS_II1283 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1284 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1285 PF00005 ABC transporter VS_II1288 PF02954 Bacterial regulatory protein, Fis family VS_II1288 PF00072 Response regulator receiver domain VS_II1288 PF00158 Sigma-54 interaction domain VS_II1289 PF00512 His Kinase A (phospho-acceptor) domain VS_II1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1289 PF02743 Cache domain VS_II1290 PF12833 Helix-turn-helix domain VS_II1290 PF02311 AraC-like ligand binding domain VS_II1294 PF13378 Enolase C-terminal domain-like VS_II1294 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VS_II1296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1296 PF03466 LysR substrate binding domain VS_II1298 PF02903 Alpha amylase, N-terminal ig-like domain VS_II1298 PF00128 Alpha amylase, catalytic domain VS_II1300 PF00672 HAMP domain VS_II1300 PF17200 Single Cache domain 2 VS_II1300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1301 PF03466 LysR substrate binding domain VS_II1303 PF12729 Four helix bundle sensory module for signal transduction VS_II1303 PF00672 HAMP domain VS_II1303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1306 PF00155 Aminotransferase class I and II VS_II1306 PF00392 Bacterial regulatory proteins, gntR family VS_II1308 PF08241 Methyltransferase domain VS_II1309 PF03222 Tryptophan/tyrosine permease family VS_II1310 PF01047 MarR family VS_II1311 PF02566 OsmC-like protein VS_II1312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1312 PF00672 HAMP domain VS_II1312 PF12729 Four helix bundle sensory module for signal transduction VS_II1315 PF00440 Bacterial regulatory proteins, tetR family VS_II1317 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1319 PF12833 Helix-turn-helix domain VS_II1320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1320 PF02378 Phosphotransferase system, EIIC VS_II1320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1321 PF01238 Phosphomannose isomerase type I VS_II1324 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1325 PF00246 Zinc carboxypeptidase VS_II1327 PF08240 Alcohol dehydrogenase GroES-like domain VS_II1327 PF00107 Zinc-binding dehydrogenase VS_II1328 PF00756 Putative esterase VS_II1331 PF13344 Haloacid dehalogenase-like hydrolase VS_II1331 PF00293 NUDIX domain VS_II1332 PF01810 LysE type translocator VS_II1334 PF00171 Aldehyde dehydrogenase family VS_II1336 PF00158 Sigma-54 interaction domain VS_II1336 PF02954 Bacterial regulatory protein, Fis family VS_II1336 PF01590 GAF domain VS_II1337 PF00672 HAMP domain VS_II1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1338 PF03466 LysR substrate binding domain VS_II1338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1339 PF14497 Glutathione S-transferase, C-terminal domain VS_II1339 PF02798 Glutathione S-transferase, N-terminal domain VS_II1340 PF13443 Cro/C1-type HTH DNA-binding domain VS_II1349 PF03605 Anaerobic c4-dicarboxylate membrane transporter VS_II1350 PF13419 Haloacid dehalogenase-like hydrolase VS_II1351 PF01966 HD domain VS_II1359 PF01047 MarR family VS_II1360 PF00892 EamA-like transporter family VS_II1365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1365 PF03466 LysR substrate binding domain VS_II1366 PF00892 EamA-like transporter family VS_II1374 PF12945 Flagellar protein YcgR VS_II1374 PF07238 PilZ domain VS_II1375 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_II1375 PF13654 AAA domain VS_II1377 PF00005 ABC transporter VS_II1377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II1383 PF00356 Bacterial regulatory proteins, lacI family VS_II1386 PF06165 Glycosyltransferase family 36 VS_II1386 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VS_II1387 PF00005 ABC transporter VS_II1387 PF17912 MalK OB fold domain VS_II1387 PF03459 TOBE domain VS_II1388 PF00232 Glycosyl hydrolase family 1 VS_II1389 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1390 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1392 PF00356 Bacterial regulatory proteins, lacI family VS_II1395 PF00326 Prolyl oligopeptidase family VS_II1395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_II1396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1396 PF03466 LysR substrate binding domain VS_II1397 PF02652 L-lactate permease VS_II1398 PF01070 FMN-dependent dehydrogenase VS_II1402 PF01497 Periplasmic binding protein VS_II1402 PF12833 Helix-turn-helix domain VS_II1403 PF00155 Aminotransferase class I and II VS_II1409 PF03707 Bacterial signalling protein N terminal repeat VS_II1409 PF00990 Diguanylate cyclase, GGDEF domain VS_II1409 PF00563 EAL domain VS_II1411 PF02678 Pirin VS_II1411 PF05726 Pirin C-terminal cupin domain VS_II1414 PF00704 Glycosyl hydrolases family 18 VS_II1414 PF08329 Chitinase A, N-terminal domain VS_II1415 PF12697 Alpha/beta hydrolase family VS_II1420 PF12852 Cupin VS_II1420 PF12833 Helix-turn-helix domain VS_II1424 PF01124 MAPEG family VS_II1426 PF07670 Nucleoside recognition VS_II1427 PF07670 Nucleoside recognition VS_II1428 PF03600 Citrate transporter VS_II1430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VS_II1430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VS_II1431 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_II1431 PF06029 AlkA N-terminal domain VS_II1433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1433 PF03466 LysR substrate binding domain VS_II1437 PF00881 Nitroreductase family VS_II1439 PF00258 Flavodoxin VS_II1439 PF00301 Rubredoxin VS_II1439 PF00753 Metallo-beta-lactamase superfamily VS_II1440 PF18113 Rubredoxin binding C-terminal domain VS_II1440 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1442 PF03616 Sodium/glutamate symporter VS_II1443 PF10928 Protein of unknown function (DUF2810) VS_II1444 PF01757 Acyltransferase family VS_II1446 PF14552 Tautomerase enzyme VS_II1448 PF04542 Sigma-70 region 2 VS_II1448 PF04545 Sigma-70, region 4 VS_II1449 PF12973 ChrR Cupin-like domain VS_II1451 PF00875 DNA photolyase VS_II1451 PF03441 FAD binding domain of DNA photolyase VS_II1453 PF00106 short chain dehydrogenase VS_II1454 PF01593 Flavin containing amine oxidoreductase VS_II1462 PF00106 short chain dehydrogenase VS_II1463 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VS_II1466 PF00155 Aminotransferase class I and II VS_II1470 PF02378 Phosphotransferase system, EIIC VS_II1470 PF00367 phosphotransferase system, EIIB VS_II1475 PF00072 Response regulator receiver domain VS_II1475 PF00486 Transcriptional regulatory protein, C terminal VS_II1476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1476 PF03466 LysR substrate binding domain VS_II1478 PF07690 Major Facilitator Superfamily VS_II1479 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II1481 PF07549 SecD/SecF GG Motif VS_II1481 PF02355 Protein export membrane protein VS_II1482 PF02355 Protein export membrane protein VS_II1482 PF13721 SecD export protein N-terminal TM region VS_II1482 PF07549 SecD/SecF GG Motif VS_II1485 PF00675 Insulinase (Peptidase family M16) VS_II1485 PF05193 Peptidase M16 inactive domain VS_II1486 PF05193 Peptidase M16 inactive domain VS_II1486 PF00675 Insulinase (Peptidase family M16) VS_II1487 PF04397 LytTr DNA-binding domain VS_II1487 PF00072 Response regulator receiver domain VS_II1488 PF06580 Histidine kinase VS_II1488 PF07694 5TMR of 5TMR-LYT VS_II1491 PF12704 MacB-like periplasmic core domain VS_II1491 PF02687 FtsX-like permease family VS_II1492 PF00005 ABC transporter VS_II1494 PF03466 LysR substrate binding domain VS_II1494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1498 PF02627 Carboxymuconolactone decarboxylase family VS_II1499 PF03466 LysR substrate binding domain VS_II1499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1501 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VS_II1501 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_II1508 PF01329 Pterin 4 alpha carbinolamine dehydratase VS_II1509 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VS_II1510 PF13193 AMP-binding enzyme C-terminal domain VS_II1510 PF00501 AMP-binding enzyme VS_II1517 PF00696 Amino acid kinase family VS_II1518 PF14497 Glutathione S-transferase, C-terminal domain VS_II1518 PF02798 Glutathione S-transferase, N-terminal domain VS_II1520 PF04209 homogentisate 1,2-dioxygenase VS_II1521 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II1524 PF00672 HAMP domain VS_II1524 PF00072 Response regulator receiver domain VS_II1524 PF01627 Hpt domain VS_II1524 PF00512 His Kinase A (phospho-acceptor) domain VS_II1524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1524 PF17149 Periplasmic sensor domain found in signal transduction proteins VS_II1526 PF08719 Domain of unknown function (DUF1768) VS_II1526 PF00925 GTP cyclohydrolase II VS_II1528 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II1528 PF00005 ABC transporter VS_II1529 PF00005 ABC transporter VS_II1529 PF08352 Oligopeptide/dipeptide transporter, C-terminal region