VS_0001 PF00258 Flavodoxin VS_0002 PF01926 50S ribosome-binding GTPase VS_0002 PF10396 GTP-binding protein TrmE N-terminus VS_0002 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VS_0003 PF02096 60Kd inner membrane protein VS_0003 PF14849 YidC periplasmic domain VS_0004 PF01809 VS_0004 VS_0005 PF00825 Ribonuclease P VS_0006 PF00468 Ribosomal protein L34 VS_0007 PF00005 ABC transporter VS_0008 PF00528 Binding-protein-dependent transport system inner membrane component VS_0009 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0010 PF00308 Bacterial dnaA protein VS_0010 PF08299 Bacterial dnaA protein helix-turn-helix VS_0010 PF11638 DnaA N-terminal domain VS_0011 PF00712 DNA polymerase III beta subunit, N-terminal domain VS_0011 PF02767 DNA polymerase III beta subunit, central domain VS_0011 PF02768 DNA polymerase III beta subunit, C-terminal domain VS_0012 PF02463 RecF/RecN/SMC N terminal domain VS_0013 PF00204 DNA gyrase B VS_0013 PF00986 DNA gyrase B subunit, carboxyl terminus VS_0013 PF01751 Toprim domain VS_0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0014 PF00011 Hsp20/alpha crystallin family VS_0015 PF00155 Aminotransferase class I and II VS_0016 PF04964 VS_0016 VS_0017 PF01478 Type IV leader peptidase family VS_0018 PF16976 VS_0018 VS_0019 PF00263 VS_0019 VS_0019 PF13629 VS_0019 VS_0021 PF10609 ParA/MinD ATPase like VS_0022 PF00437 Type II/IV secretion system protein VS_0023 PF00482 Type II secretion system (T2SS), protein F VS_0024 PF00482 Type II secretion system (T2SS), protein F VS_0027 PF16964 VS_0027 VS_0028 PF13400 VS_0028 VS_0029 PF00691 OmpA family VS_0030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0031 PF00072 Response regulator receiver domain VS_0031 PF00486 Transcriptional regulatory protein, C terminal VS_0032 PF02092 VS_0032 VS_0032 PF05746 DALR anticodon binding domain VS_0033 PF02091 Glycyl-tRNA synthetase alpha subunit VS_0035 PF01169 VS_0035 VS_0037 PF01206 Sulfurtransferase TusA VS_0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0038 PF03466 LysR substrate binding domain VS_0039 PF00107 Zinc-binding dehydrogenase VS_0040 PF00108 Thiolase, N-terminal domain VS_0040 PF02803 Thiolase, C-terminal domain VS_0041 PF00378 Enoyl-CoA hydratase/isomerase family VS_0041 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_0041 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_0042 PF01205 Uncharacterized protein family UPF0029 VS_0042 PF09186 Domain of unknown function (DUF1949) VS_0043 PF02386 Cation transport protein VS_0044 PF12724 Flavodoxin domain VS_0060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0060 PF03466 LysR substrate binding domain VS_0061 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VS_0061 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VS_0062 PF04380 VS_0062 VS_0063 PF00873 AcrB/AcrD/AcrF family VS_0064 PF00529 HlyD family secretion protein VS_0064 PF16576 VS_0064 VS_0065 PF00440 Bacterial regulatory proteins, tetR family VS_0065 PF16295 VS_0065 VS_0066 PF00580 UvrD/REP helicase N-terminal domain VS_0066 PF13361 UvrD-like helicase C-terminal domain VS_0067 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_0074 PF00005 ABC transporter VS_0074 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_0076 PF00528 Binding-protein-dependent transport system inner membrane component VS_0077 PF00528 Binding-protein-dependent transport system inner membrane component VS_0077 PF12911 VS_0077 VS_0078 PF05036 Sporulation related domain VS_0079 PF03116 VS_0079 VS_0082 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_0082 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0083 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VS_0084 PF01432 Peptidase family M3 VS_0085 PF01037 AsnC family VS_0085 PF13404 AsnC-type helix-turn-helix domain VS_0086 PF00563 EAL domain VS_0086 PF00990 GGDEF domain VS_0086 PF13426 PAS domain VS_0087 PF04445 Putative SAM-dependent methyltransferase VS_0089 PF00892 EamA-like transporter family VS_0090 PF00582 Universal stress protein family VS_0091 PF00210 Ferritin-like domain VS_0092 PF10625 VS_0092 VS_0094 PF03486 HI0933-like protein VS_0096 PF00892 EamA-like transporter family VS_0097 PF02646 VS_0097 VS_0098 PF01209 ubiE/COQ5 methyltransferase family VS_0099 PF02036 SCP-2 sterol transfer family VS_0100 PF03109 VS_0100 VS_0101 PF02416 mttA/Hcf106 family VS_0102 PF02416 mttA/Hcf106 family VS_0103 PF00902 Sec-independent protein translocase protein (TatC) VS_0104 PF01026 TatD related DNase VS_0105 PF00490 Delta-aminolevulinic acid dehydratase VS_0106 PF00583 Acetyltransferase (GNAT) family VS_0108 PF00476 DNA polymerase family A VS_0108 PF01367 5'-3' exonuclease, C-terminal SAM fold VS_0108 PF01612 3'-5' exonuclease VS_0108 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VS_0111 PF01926 50S ribosome-binding GTPase VS_0112 PF00034 Cytochrome c VS_0113 PF13489 Methyltransferase domain VS_0114 PF04220 VS_0114 VS_0115 PF10675 VS_0115 VS_0116 PF04055 Radical SAM superfamily VS_0116 PF06969 HemN C-terminal domain VS_0117 PF00563 EAL domain VS_0117 PF00990 GGDEF domain VS_0117 PF02743 Cache domain VS_0118 PF00072 Response regulator receiver domain VS_0118 PF00158 Sigma-54 interaction domain VS_0118 PF02954 Bacterial regulatory protein, Fis family VS_0119 PF00512 His Kinase A (phospho-acceptor) domain VS_0119 PF00989 PAS fold VS_0119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0120 PF13511 VS_0120 VS_0121 PF00120 Glutamine synthetase, catalytic domain VS_0121 PF03951 Glutamine synthetase, beta-Grasp domain VS_0123 PF00009 Elongation factor Tu GTP binding domain VS_0123 PF00679 Elongation factor G C-terminus VS_0123 PF03144 Elongation factor Tu domain 2 VS_0124 PF13521 AAA domain VS_0125 PF11172 VS_0125 VS_0126 PF03631 VS_0126 VS_0127 PF02580 D-Tyr-tRNA(Tyr) deacylase VS_0128 PF09500 Putative thioesterase (yiiD_Cterm) VS_0128 PF13673 Acetyltransferase (GNAT) domain VS_0130 PF05170 VS_0130 VS_0131 PF01293 Phosphoenolpyruvate carboxykinase VS_0132 PF01430 Hsp33 protein VS_0133 PF01479 S4 domain VS_0134 PF11356 Type IV pilus biogenesis VS_0135 PF00263 VS_0135 VS_0135 PF03958 Bacterial type II/III secretion system short domain VS_0136 PF00437 Type II/IV secretion system protein VS_0137 PF00482 Type II secretion system (T2SS), protein F VS_0138 PF07963 Prokaryotic N-terminal methylation motif VS_0138 PF08334 Type II secretion system (T2SS), protein G VS_0139 PF07963 Prokaryotic N-terminal methylation motif VS_0139 PF12019 Type II transport protein GspH VS_0140 PF02501 Type II secretion system (T2SS), protein I VS_0140 PF07963 Prokaryotic N-terminal methylation motif VS_0141 PF07963 Prokaryotic N-terminal methylation motif VS_0141 PF11612 Type II secretion system (T2SS), protein J VS_0142 PF03934 Type II secretion system (T2SS), protein K VS_0143 PF05134 Type II secretion system (T2SS), protein L VS_0143 PF12693 GspL periplasmic domain VS_0144 PF04612 Type II secretion system (T2SS), protein M VS_0145 PF01203 VS_0145 VS_0146 PF00459 Inositol monophosphatase family VS_0147 PF00293 NUDIX domain VS_0148 PF01106 NifU-like domain VS_0148 PF01521 Iron-sulphur cluster biosynthesis VS_0149 PF00156 Phosphoribosyl transferase domain VS_0150 PF00561 alpha/beta hydrolase fold VS_0153 PF00575 S1 RNA binding domain VS_0153 PF09371 Tex-like protein N-terminal domain VS_0153 PF12836 Helix-hairpin-helix motif VS_0153 PF16921 VS_0153 VS_0155 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_0155 PF03449 Transcription elongation factor, N-terminal VS_0156 PF00072 Response regulator receiver domain VS_0156 PF00486 Transcriptional regulatory protein, C terminal VS_0157 PF00512 His Kinase A (phospho-acceptor) domain VS_0157 PF00672 HAMP domain VS_0157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0158 PF00270 DEAD/DEAH box helicase VS_0158 PF00271 Helicase conserved C-terminal domain VS_0158 PF17191 VS_0158 VS_0159 PF02824 TGS domain VS_0159 PF04607 Region found in RelA / SpoT proteins VS_0159 PF13291 ACT domain VS_0159 PF13328 HD domain VS_0160 PF01192 RNA polymerase Rpb6 VS_0161 PF00625 Guanylate kinase VS_0162 PF00860 Permease family VS_0163 PF06146 VS_0163 VS_0165 PF00367 phosphotransferase system, EIIB VS_0165 PF02378 Phosphotransferase system, EIIC VS_0166 PF01546 Peptidase family M20/M25/M40 VS_0167 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VS_0168 PF00456 Transketolase, thiamine diphosphate binding domain VS_0168 PF02779 Transketolase, pyrimidine binding domain VS_0168 PF02780 Transketolase, C-terminal domain VS_0169 PF00923 Transaldolase VS_0170 PF13419 Haloacid dehalogenase-like hydrolase VS_0171 PF00465 Iron-containing alcohol dehydrogenase VS_0172 PF00834 Ribulose-phosphate 3 epimerase family VS_0173 PF08282 haloacid dehalogenase-like hydrolase VS_0174 PF00455 VS_0174 VS_0174 PF08220 DeoR-like helix-turn-helix domain VS_0175 PF00313 'Cold-shock' DNA-binding domain VS_0176 PF03755 VS_0176 VS_0176 PF08340 VS_0176 VS_0177 PF01138 3' exoribonuclease family, domain 1 VS_0177 PF03725 3' exoribonuclease family, domain 2 VS_0178 PF00156 Phosphoribosyl transferase domain VS_0179 PF03279 VS_0179 VS_0180 PF00440 Bacterial regulatory proteins, tetR family VS_0181 PF02441 Flavoprotein VS_0181 PF04127 DNA / pantothenate metabolism flavoprotein VS_0182 PF04002 RadC-like JAB domain VS_0183 PF00830 Ribosomal L28 family VS_0184 PF00471 Ribosomal protein L33 VS_0186 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VS_0186 PF06827 Zinc finger found in FPG and IleRS VS_0186 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VS_0187 PF05686 VS_0187 VS_0188 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_0189 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VS_0190 PF01755 VS_0190 VS_0192 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VS_0193 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_0194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_0195 PF01467 Cytidylyltransferase VS_0196 PF00534 Glycosyl transferases group 1 VS_0198 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0199 PF03279 VS_0199 VS_0201 PF01370 NAD dependent epimerase/dehydratase family VS_0202 PF00440 Bacterial regulatory proteins, tetR family VS_0202 PF13972 Bacterial transcriptional repressor VS_0203 PF01551 Peptidase family M23 VS_0204 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0204 PF06426 Serine acetyltransferase, N-terminal VS_0205 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VS_0205 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VS_0206 PF02556 Preprotein translocase subunit SecB VS_0207 PF00581 Rhodanese-like domain VS_0209 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB VS_0210 PF06251 Capsule biosynthesis GfcC VS_0212 PF06082 VS_0212 VS_0213 PF02563 Polysaccharide biosynthesis/export protein VS_0213 PF10531 SLBB domain VS_0214 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_0215 PF02706 Chain length determinant protein VS_0215 PF13614 AAA domain VS_0215 PF13807 VS_0215 VS_0216 PF00793 DAHP synthetase I family VS_0217 PF08282 haloacid dehalogenase-like hydrolase VS_0218 PF02348 Cytidylyltransferase VS_0219 PF00571 CBS domain VS_0219 PF01380 SIS domain VS_0220 PF14296 VS_0220 VS_0221 PF00535 Glycosyl transferase family 2 VS_0222 PF01973 VS_0222 VS_0223 PF01943 VS_0223 VS_0223 PF14667 Polysaccharide biosynthesis C-terminal domain VS_0225 PF00132 Bacterial transferase hexapeptide (six repeats) VS_0226 PF00534 Glycosyl transferases group 1 VS_0227 PF16363 VS_0227 VS_0228 PF00483 Nucleotidyl transferase VS_0229 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VS_0230 PF04321 RmlD substrate binding domain VS_0231 PF00535 Glycosyl transferase family 2 VS_0232 PF01370 NAD dependent epimerase/dehydratase family VS_0233 PF02397 VS_0233 VS_0234 PF02719 Polysaccharide biosynthesis protein VS_0234 PF13727 CoA-binding domain VS_0235 PF01676 Metalloenzyme superfamily VS_0235 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VS_0236 PF01554 MatE VS_0237 PF02706 Chain length determinant protein VS_0237 PF13807 VS_0237 VS_0238 PF00166 Chaperonin 10 Kd subunit VS_0239 PF00118 TCP-1/cpn60 chaperonin family VS_0241 PF00990 GGDEF domain VS_0242 PF02308 VS_0242 VS_0243 PF04055 Radical SAM superfamily VS_0243 PF13394 4Fe-4S single cluster domain VS_0244 PF01132 Elongation factor P (EF-P) OB domain VS_0244 PF08207 Elongation factor P (EF-P) KOW-like domain VS_0244 PF09285 Elongation factor P, C-terminal VS_0245 PF02313 Fumarate reductase subunit D VS_0246 PF02300 Fumarate reductase subunit C VS_0247 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_0247 PF13183 4Fe-4S dicluster domain VS_0248 PF00890 FAD binding domain VS_0248 PF02910 Fumarate reductase flavoprotein C-term VS_0249 PF00152 tRNA synthetases class II (D, K and N) VS_0250 PF00892 EamA-like transporter family VS_0251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0251 PF00672 HAMP domain VS_0251 PF02743 Cache domain VS_0252 PF00939 Sodium:sulfate symporter transmembrane region VS_0253 PF02666 VS_0253 VS_0254 PF03193 Protein of unknown function, DUF258 VS_0255 PF00929 Exonuclease VS_0265 PF08331 VS_0265 VS_0265 PF13484 VS_0265 VS_0266 PF02367 Uncharacterised P-loop hydrolase UPF0079 VS_0267 PF01476 LysM domain VS_0267 PF01520 N-acetylmuramoyl-L-alanine amidase VS_0267 PF11741 AMIN domain VS_0268 PF01119 DNA mismatch repair protein, C-terminal domain VS_0268 PF08676 MutL C terminal dimerisation domain VS_0268 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0269 PF01715 IPP transferase VS_0270 PF17209 VS_0270 VS_0271 PF01926 50S ribosome-binding GTPase VS_0271 PF13167 VS_0271 VS_0271 PF16360 VS_0271 VS_0272 PF01145 SPFH domain / Band 7 family VS_0272 PF12221 VS_0272 VS_0273 PF01145 SPFH domain / Band 7 family VS_0274 PF09838 VS_0274 VS_0275 PF00709 Adenylosuccinate synthetase VS_0276 PF08238 Sel1 repeat VS_0277 PF01979 Amidohydrolase family VS_0278 PF00575 S1 RNA binding domain VS_0278 PF00773 RNB domain VS_0278 PF08206 Ribonuclease B OB domain VS_0278 PF08461 Ribonuclease R winged-helix domain VS_0279 PF00588 SpoU rRNA Methylase family VS_0279 PF08032 RNA 2'-O ribose methyltransferase substrate binding VS_0280 PF01250 Ribosomal protein S6 VS_0281 PF01084 Ribosomal protein S18 VS_0282 PF01281 Ribosomal protein L9, N-terminal domain VS_0282 PF03948 Ribosomal protein L9, C-terminal domain VS_0283 PF04338 Protein of unknown function, DUF481 VS_0284 PF00772 DnaB-like helicase N terminal domain VS_0284 PF03796 DnaB-like helicase C terminal domain VS_0285 PF00842 Alanine racemase, C-terminal domain VS_0285 PF01168 Alanine racemase, N-terminal domain VS_0286 PF01103 Surface antigen VS_0287 PF01894 Uncharacterised protein family UPF0047 VS_0288 PF00342 Phosphoglucose isomerase VS_0289 PF13690 Chemotaxis phosphatase CheX VS_0290 PF01475 Ferric uptake regulator family VS_0294 PF01207 Dihydrouridine synthase (Dus) VS_0296 PF09583 VS_0296 VS_0299 PF00175 Oxidoreductase NAD-binding domain VS_0299 PF00258 Flavodoxin VS_0299 PF00667 FAD binding domain VS_0300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_0300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_0301 PF01507 Phosphoadenosine phosphosulfate reductase family VS_0314 PF00999 Sodium/hydrogen exchanger family VS_0315 PF00809 Pterin binding enzyme VS_0315 PF02310 B12 binding domain VS_0315 PF02574 Homocysteine S-methyltransferase VS_0315 PF02607 B12 binding domain VS_0315 PF02965 Vitamin B12 dependent methionine synthase, activation domain VS_0316 PF00696 Amino acid kinase family VS_0318 PF00266 Aminotransferase class-V VS_0319 PF04932 VS_0319 VS_0319 PF11846 VS_0319 VS_0319 PF15864 VS_0319 VS_0320 PF00005 ABC transporter VS_0321 PF00483 Nucleotidyl transferase VS_0322 PF00196 Bacterial regulatory proteins, luxR family VS_0323 PF00436 Single-strand binding protein family VS_0324 PF00563 EAL domain VS_0324 PF00990 GGDEF domain VS_0324 PF17157 VS_0324 VS_0326 PF04350 Pilus assembly protein, PilO VS_0328 PF00263 VS_0328 VS_0328 PF07655 VS_0328 VS_0329 PF13401 AAA domain VS_0331 PF00437 Type II/IV secretion system protein VS_0331 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_0332 PF00482 Type II secretion system (T2SS), protein F VS_0334 PF07963 Prokaryotic N-terminal methylation motif VS_0335 PF07963 Prokaryotic N-terminal methylation motif VS_0336 PF07963 Prokaryotic N-terminal methylation motif VS_0337 PF07963 Prokaryotic N-terminal methylation motif VS_0338 PF07963 Prokaryotic N-terminal methylation motif VS_0341 PF06723 MreB/Mbl protein VS_0342 PF04085 rod shape-determining protein MreC VS_0343 PF04093 VS_0343 VS_0344 PF02545 Maf-like protein VS_0345 PF00575 S1 RNA binding domain VS_0345 PF10150 Ribonuclease E/G family VS_0346 PF13116 VS_0346 VS_0346 PF13502 VS_0346 VS_0347 PF00795 Carbon-nitrogen hydrolase VS_0348 PF01523 Putative modulator of DNA gyrase VS_0349 PF02562 PhoH-like protein VS_0349 PF13638 PIN domain VS_0350 PF00176 SNF2 family N-terminal domain VS_0350 PF00271 Helicase conserved C-terminal domain VS_0350 PF12137 RNA polymerase recycling family C-terminal VS_0351 PF00849 RNA pseudouridylate synthase VS_0352 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_0352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_0353 PF00582 Universal stress protein family VS_0354 PF06808 VS_0354 VS_0354 PF11874 VS_0354 VS_0355 PF16868 VS_0355 VS_0357 PF01316 Arginine repressor, DNA binding domain VS_0357 PF02863 Arginine repressor, C-terminal domain VS_0358 PF00056 lactate/malate dehydrogenase, NAD binding domain VS_0358 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VS_0360 PF00348 Polyprenyl synthetase VS_0361 PF00829 Ribosomal prokaryotic L21 protein VS_0362 PF01016 Ribosomal L27 protein VS_0363 PF01018 GTP1/OBG VS_0363 PF01926 50S ribosome-binding GTPase VS_0366 PF12821 VS_0366 VS_0367 PF00186 Dihydrofolate reductase VS_0368 PF00149 Calcineurin-like phosphoesterase VS_0369 PF04379 Protein of unknown function (DUF525) VS_0370 PF00398 Ribosomal RNA adenine dimethylase VS_0371 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VS_0372 PF09312 SurA N-terminal domain VS_0372 PF13616 PPIC-type PPIASE domain VS_0373 PF03968 OstA-like protein VS_0373 PF04453 Organic solvent tolerance protein VS_0374 PF00226 DnaJ domain VS_0374 PF05099 Tellurite resistance protein TerB VS_0375 PF06041 Bacterial protein of unknown function (DUF924) VS_0376 PF04784 VS_0376 VS_0377 PF00694 Aconitase C-terminal domain VS_0378 PF00330 Aconitase family (aconitate hydratase) VS_0379 PF00180 Isocitrate/isopropylmalate dehydrogenase VS_0380 PF00682 HMGL-like VS_0380 PF08502 LeuA allosteric (dimerisation) domain VS_0381 PF00440 Bacterial regulatory proteins, tetR family VS_0383 PF00873 AcrB/AcrD/AcrF family VS_0384 PF01569 PAP2 superfamily VS_0385 PF13528 Glycosyl transferase family 1 VS_0386 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0386 PF03466 LysR substrate binding domain VS_0387 PF00501 AMP-binding enzyme VS_0388 PF00205 Thiamine pyrophosphate enzyme, central domain VS_0388 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_0388 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_0389 PF10369 Small subunit of acetolactate synthase VS_0389 PF13710 ACT domain VS_0391 PF00392 Bacterial regulatory proteins, gntR family VS_0391 PF07729 FCD domain VS_0392 PF00224 Pyruvate kinase, barrel domain VS_0392 PF02887 Pyruvate kinase, alpha/beta domain VS_0393 PF00455 VS_0393 VS_0393 PF08220 DeoR-like helix-turn-helix domain VS_0394 PF01380 SIS domain VS_0394 PF13522 Glutamine amidotransferase domain VS_0395 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_0397 PF00140 Sigma-70 factor, region 1 VS_0397 PF03979 Sigma-70 factor, region 1 VS_0397 PF04539 Sigma-70 region 3 VS_0397 PF04542 Sigma-70 region 2 VS_0397 PF04545 Sigma-70, region 4 VS_0397 PF04546 Sigma-70, non-essential region VS_0398 PF01807 CHC2 zinc finger VS_0398 PF08275 DNA primase catalytic core, N-terminal domain VS_0398 PF08278 DNA primase DnaG DnaB-binding VS_0398 PF10410 DnaB-helicase binding domain of primase VS_0398 PF13662 Toprim domain VS_0399 PF09424 Yqey-like protein VS_0400 PF01165 Ribosomal protein S21 VS_0401 PF00814 Glycoprotease family VS_0402 PF12697 Alpha/beta hydrolase family VS_0403 PF02660 VS_0403 VS_0404 PF02152 Dihydroneopterin aldolase VS_0405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_0406 PF02673 VS_0406 VS_0407 PF01743 Poly A polymerase head domain VS_0407 PF01966 HD domain VS_0407 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_0408 PF01471 Putative peptidoglycan binding domain VS_0408 PF13401 AAA domain VS_0409 PF16537 VS_0409 VS_0410 PF08239 Bacterial SH3 domain VS_0411 PF01384 VS_0411 VS_0412 PF01865 Protein of unknown function DUF47 VS_0413 PF01928 CYTH domain VS_0413 PF05235 CHAD domain VS_0414 PF00520 Ion transport protein VS_0415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0416 PF03710 Glutamate-ammonia ligase adenylyltransferase VS_0416 PF08335 GlnD PII-uridylyltransferase VS_0417 PF00294 pfkB family carbohydrate kinase VS_0417 PF01467 Cytidylyltransferase VS_0418 PF02321 Outer membrane efflux protein VS_0419 PF00293 NUDIX domain VS_0420 PF06853 VS_0420 VS_0421 PF00149 Calcineurin-like phosphoesterase VS_0422 PF05728 Uncharacterised protein family (UPF0227) VS_0423 PF00204 DNA gyrase B VS_0423 PF00986 DNA gyrase B subunit, carboxyl terminus VS_0423 PF01751 Toprim domain VS_0423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0424 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_0424 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_0425 PF13180 PDZ domain VS_0425 PF13365 Trypsin-like peptidase domain VS_0426 PF00595 PDZ domain (Also known as DHR or GLGF) VS_0426 PF13180 PDZ domain VS_0426 PF13365 Trypsin-like peptidase domain VS_0427 PF06295 VS_0427 VS_0428 PF03969 AFG1-like ATPase VS_0429 PF00572 Ribosomal protein L13 VS_0430 PF00380 Ribosomal protein S9/S16 VS_0431 PF00355 Rieske [2Fe-2S] domain VS_0431 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VS_0432 PF00032 Cytochrome b(C-terminal)/b6/petD VS_0432 PF00033 Cytochrome b(N-terminal)/b6/petB VS_0433 PF02167 Cytochrome C1 family VS_0434 PF00043 Glutathione S-transferase, C-terminal domain VS_0434 PF13417 Glutathione S-transferase, N-terminal domain VS_0435 PF04386 Stringent starvation protein B VS_0436 PF04972 BON domain VS_0437 PF13580 SIS domain VS_0438 PF02021 Uncharacterised protein family UPF0102 VS_0439 PF04348 LppC putative lipoprotein VS_0440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_0442 PF01795 MraW methylase family VS_0443 PF04999 VS_0443 VS_0444 PF00905 Penicillin binding protein transpeptidase domain VS_0444 PF03717 Penicillin-binding Protein dimerisation domain VS_0445 PF01225 Mur ligase family, catalytic domain VS_0445 PF02875 Mur ligase family, glutamate ligase domain VS_0445 PF08245 Mur ligase middle domain VS_0446 PF01225 Mur ligase family, catalytic domain VS_0446 PF02875 Mur ligase family, glutamate ligase domain VS_0446 PF08245 Mur ligase middle domain VS_0447 PF00953 Glycosyl transferase family 4 VS_0447 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VS_0448 PF02875 Mur ligase family, glutamate ligase domain VS_0448 PF08245 Mur ligase middle domain VS_0449 PF01098 VS_0449 VS_0450 PF03033 Glycosyltransferase family 28 N-terminal domain VS_0450 PF04101 Glycosyltransferase family 28 C-terminal domain VS_0451 PF01225 Mur ligase family, catalytic domain VS_0451 PF02875 Mur ligase family, glutamate ligase domain VS_0451 PF08245 Mur ligase middle domain VS_0452 PF03799 Cell division protein FtsQ VS_0452 PF08478 POTRA domain, FtsQ-type VS_0453 PF02491 SHS2 domain inserted in FTSA VS_0453 PF14450 Cell division protein FtsA VS_0454 PF00091 Tubulin/FtsZ family, GTPase domain VS_0454 PF12327 FtsZ family, C-terminal domain VS_0455 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VS_0456 PF01043 SecA preprotein cross-linking domain VS_0456 PF02810 SEC-C motif VS_0456 PF07516 SecA Wing and Scaffold domain VS_0456 PF07517 SecA DEAD-like domain VS_0458 PF00665 Integrase core domain VS_0459 PF00293 NUDIX domain VS_0460 PF01113 Dihydrodipicolinate reductase, N-terminus VS_0460 PF05173 Dihydrodipicolinate reductase, C-terminus VS_0461 PF00117 Glutamine amidotransferase class-I VS_0461 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VS_0462 PF02142 MGS-like domain VS_0462 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_0462 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VS_0463 PF01925 VS_0463 VS_0464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0464 PF03466 LysR substrate binding domain VS_0465 PF03458 VS_0465 VS_0466 PF01497 Periplasmic binding protein VS_0467 PF03186 VS_0467 VS_0468 PF01048 Phosphorylase superfamily VS_0469 PF07386 VS_0469 VS_0470 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_0471 PF00310 Glutamine amidotransferases class-II VS_0471 PF01493 GXGXG motif VS_0471 PF01645 Conserved region in glutamate synthase VS_0471 PF04898 Glutamate synthase central domain VS_0472 PF00310 Glutamine amidotransferases class-II VS_0473 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0473 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_0474 PF00310 Glutamine amidotransferases class-II VS_0474 PF01493 GXGXG motif VS_0474 PF01645 Conserved region in glutamate synthase VS_0474 PF04898 Glutamate synthase central domain VS_0475 PF04055 Radical SAM superfamily VS_0475 PF16199 VS_0475 VS_0476 PF00990 GGDEF domain VS_0476 PF08448 PAS fold VS_0476 PF13188 PAS domain VS_0477 PF00072 Response regulator receiver domain VS_0477 PF00512 His Kinase A (phospho-acceptor) domain VS_0477 PF01627 Hpt domain VS_0477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0477 PF08448 PAS fold VS_0479 PF00072 Response regulator receiver domain VS_0479 PF00486 Transcriptional regulatory protein, C terminal VS_0480 PF03737 Demethylmenaquinone methyltransferase VS_0483 PF00696 Amino acid kinase family VS_0483 PF00742 Homoserine dehydrogenase VS_0483 PF01842 ACT domain VS_0483 PF03447 Homoserine dehydrogenase, NAD binding domain VS_0483 PF13840 ACT domain VS_0484 PF00288 GHMP kinases N terminal domain VS_0484 PF08544 GHMP kinases C terminal VS_0485 PF00291 Pyridoxal-phosphate dependent enzyme VS_0485 PF14821 Threonine synthase N terminus VS_0487 PF00665 Integrase core domain VS_0492 PF01757 VS_0492 VS_0497 PF00665 Integrase core domain VS_0498 PF01228 Glycine radical VS_0499 PF01261 Xylose isomerase-like TIM barrel VS_0501 PF03167 Uracil DNA glycosylase superfamily VS_0502 PF01814 Hemerythrin HHE cation binding domain VS_0503 PF12065 VS_0503 VS_0504 PF01235 VS_0504 VS_0505 PF03883 VS_0505 VS_0506 PF00270 DEAD/DEAH box helicase VS_0506 PF00271 Helicase conserved C-terminal domain VS_0507 PF05175 Methyltransferase small domain VS_0508 PF05525 VS_0508 VS_0511 PF00258 Flavodoxin VS_0512 PF00589 Phage integrase family VS_0512 PF02899 Phage integrase, N-terminal SAM-like domain VS_0513 PF10411 Disulfide bond isomerase protein N-terminus VS_0513 PF13098 Thioredoxin-like domain VS_0514 PF01368 DHH family VS_0514 PF02272 DHHA1 domain VS_0516 PF00472 RF-1 domain VS_0516 PF03462 PCRF domain VS_0517 PF00152 tRNA synthetases class II (D, K and N) VS_0517 PF01336 OB-fold nucleic acid binding domain VS_0518 PF00158 Sigma-54 interaction domain VS_0518 PF02954 Bacterial regulatory protein, Fis family VS_0522 PF02976 DNA mismatch repair enzyme MutH VS_0523 PF00293 NUDIX domain VS_0524 PF00391 PEP-utilising enzyme, mobile domain VS_0524 PF01590 GAF domain VS_0524 PF02896 PEP-utilising enzyme, TIM barrel domain VS_0524 PF05524 PEP-utilising enzyme, N-terminal VS_0525 PF01925 VS_0525 VS_0526 PF01790 VS_0526 VS_0527 PF00303 Thymidylate synthase VS_0528 PF00486 Transcriptional regulatory protein, C terminal VS_0530 PF02690 VS_0530 VS_0531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0531 PF03466 LysR substrate binding domain VS_0532 PF01022 Bacterial regulatory protein, arsR family VS_0533 PF01649 Ribosomal protein S20 VS_0534 PF03023 VS_0534 VS_0535 PF01687 Riboflavin kinase VS_0535 PF06574 FAD synthetase VS_0536 PF00133 tRNA synthetases class I (I, L, M and V) VS_0536 PF06827 Zinc finger found in FPG and IleRS VS_0536 PF08264 Anticodon-binding domain of tRNA VS_0537 PF01252 VS_0537 VS_0538 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_0539 PF02401 LytB protein VS_0540 PF00072 Response regulator receiver domain VS_0540 PF04397 LytTr DNA-binding domain VS_0541 PF06580 VS_0541 VS_0541 PF07694 5TMR of 5TMR-LYT VS_0542 PF02554 VS_0542 VS_0542 PF13722 VS_0542 VS_0543 PF10973 VS_0543 VS_0544 PF13580 SIS domain VS_0545 PF03702 Uncharacterised protein family (UPF0075) VS_0546 PF00933 Glycosyl hydrolase family 3 N terminal domain VS_0547 PF00793 DAHP synthetase I family VS_0548 PF01817 Chorismate mutase type II VS_0548 PF02153 Prephenate dehydrogenase VS_0549 PF01551 Peptidase family M23 VS_0550 PF07238 PilZ domain VS_0551 PF00005 ABC transporter VS_0551 PF12848 ABC transporter VS_0552 PF01464 Transglycosylase SLT domain VS_0552 PF14718 Soluble lytic murein transglycosylase L domain VS_0553 PF01371 Trp repressor protein VS_0554 PF01931 Protein of unknown function DUF84 VS_0555 PF00563 EAL domain VS_0555 PF00990 GGDEF domain VS_0556 PF00800 Prephenate dehydratase VS_0556 PF01817 Chorismate mutase type II VS_0557 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_0558 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0558 PF01464 Transglycosylase SLT domain VS_0559 PF13525 Outer membrane lipoprotein VS_0560 PF00849 RNA pseudouridylate synthase VS_0560 PF01479 S4 domain VS_0561 PF02578 Multi-copper polyphenol oxidoreductase laccase VS_0562 PF00004 ATPase family associated with various cellular activities (AAA) VS_0562 PF02861 Clp amino terminal domain VS_0562 PF07724 AAA domain (Cdc48 subfamily) VS_0562 PF10431 C-terminal, D2-small domain, of ClpB protein VS_0574 PF03411 Penicillin-insensitive murein endopeptidase VS_0576 PF12838 4Fe-4S dicluster domain VS_0577 PF01136 VS_0577 VS_0577 PF16325 VS_0577 VS_0578 PF04381 Putative exonuclease, RdgC VS_0579 PF00072 Response regulator receiver domain VS_0579 PF00486 Transcriptional regulatory protein, C terminal VS_0580 PF00512 His Kinase A (phospho-acceptor) domain VS_0580 PF00989 PAS fold VS_0580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0580 PF11808 VS_0580 VS_0581 PF12849 PBP superfamily domain VS_0582 PF02541 Ppx/GppA phosphatase family VS_0583 PF02503 Polyphosphate kinase middle domain VS_0583 PF13089 Polyphosphate kinase N-terminal domain VS_0583 PF13090 Polyphosphate kinase C-terminal domain VS_0585 PF00528 Binding-protein-dependent transport system inner membrane component VS_0586 PF00528 Binding-protein-dependent transport system inner membrane component VS_0587 PF00005 ABC transporter VS_0588 PF01895 PhoU domain VS_0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0591 PF03466 LysR substrate binding domain VS_0592 PF03932 CutC family VS_0593 PF00578 AhpC/TSA family VS_0593 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_0594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0594 PF03466 LysR substrate binding domain VS_0595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0596 PF12729 VS_0596 VS_0597 PF00571 CBS domain VS_0598 PF02547 Queuosine biosynthesis protein VS_0599 PF01702 Queuine tRNA-ribosyltransferase VS_0600 PF02699 Preprotein translocase subunit VS_0601 PF02355 Protein export membrane protein VS_0601 PF07549 SecD/SecF GG Motif VS_0601 PF13721 SecD export protein N-terminal TM region VS_0602 PF02355 Protein export membrane protein VS_0602 PF07549 SecD/SecF GG Motif VS_0604 PF00459 Inositol monophosphatase family VS_0605 PF00588 SpoU rRNA Methylase family VS_0606 PF02082 Transcriptional regulator VS_0607 PF00266 Aminotransferase class-V VS_0608 PF01592 NifU-like N terminal domain VS_0609 PF01521 Iron-sulphur cluster biosynthesis VS_0610 PF00226 DnaJ domain VS_0610 PF07743 HSCB C-terminal oligomerisation domain VS_0611 PF00012 Hsp70 protein VS_0612 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_0613 PF04384 Iron-sulphur cluster assembly VS_0614 PF00883 Cytosol aminopeptidase family, catalytic domain VS_0614 PF12404 VS_0614 VS_0615 PF00334 Nucleoside diphosphate kinase VS_0616 PF04055 Radical SAM superfamily VS_0618 PF13413 Helix-turn-helix domain VS_0618 PF13464 VS_0618 VS_0619 PF04551 GcpE protein VS_0620 PF03129 Anticodon binding domain VS_0620 PF13393 Histidyl-tRNA synthetase VS_0621 PF09976 Tetratricopeptide repeat VS_0622 PF13360 PQQ-like domain VS_0623 PF01926 50S ribosome-binding GTPase VS_0623 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VS_0625 PF00990 GGDEF domain VS_0625 PF13185 GAF domain VS_0626 PF07191 zinc-ribbons VS_0627 PF02601 VS_0627 VS_0627 PF13742 VS_0627 VS_0628 PF00478 IMP dehydrogenase / GMP reductase domain VS_0628 PF00571 CBS domain VS_0629 PF00117 Glutamine amidotransferase class-I VS_0629 PF00958 GMP synthase C terminal domain VS_0629 PF02540 NAD synthase VS_0630 PF00182 Chitinase class I VS_0630 PF02839 Carbohydrate binding domain VS_0632 PF01184 VS_0632 VS_0633 PF01235 VS_0633 VS_0634 PF00753 Metallo-beta-lactamase superfamily VS_0634 PF07521 RNA-metabolising metallo-beta-lactamase VS_0634 PF10996 Beta-Casp domain VS_0635 PF01553 Acyltransferase VS_0637 PF04143 VS_0637 VS_0638 PF04250 VS_0638 VS_0639 PF13539 D-alanyl-D-alanine carboxypeptidase VS_0640 PF05618 Putative ATP-dependant zinc protease VS_0642 PF01668 SmpB protein VS_0643 PF03364 Polyketide cyclase / dehydrase and lipid transport VS_0644 PF03658 RnfH family Ubiquitin VS_0645 PF04355 SmpA / OmlA family VS_0646 PF02463 RecF/RecN/SMC N terminal domain VS_0648 PF01513 ATP-NAD kinase VS_0649 PF01025 GrpE VS_0650 PF00375 Sodium:dicarboxylate symporter family VS_0651 PF00012 Hsp70 protein VS_0652 PF00226 DnaJ domain VS_0652 PF00684 DnaJ central domain VS_0652 PF01556 DnaJ C terminal domain VS_0653 PF07963 Prokaryotic N-terminal methylation motif VS_0653 PF16732 VS_0653 VS_0654 PF07963 Prokaryotic N-terminal methylation motif VS_0654 PF12019 Type II transport protein GspH VS_0657 PF07963 Prokaryotic N-terminal methylation motif VS_0659 PF03806 VS_0659 VS_0660 PF00571 CBS domain VS_0660 PF01595 VS_0660 VS_0660 PF03471 Transporter associated domain VS_0661 PF14437 VS_0661 VS_0663 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0663 PF01464 Transglycosylase SLT domain VS_0664 PF02769 AIR synthase related protein, C-terminal domain VS_0664 PF13507 CobB/CobQ-like glutamine amidotransferase domain VS_0665 PF11810 VS_0665 VS_0666 PF14602 Hexapeptide repeat of succinyl-transferase VS_0666 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VS_0667 PF01914 VS_0667 VS_0668 PF14057 VS_0668 VS_0669 PF01592 NifU-like N terminal domain VS_0670 PF07130 YebG protein VS_0671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0671 PF03466 LysR substrate binding domain VS_0672 PF03595 Voltage-dependent anion channel VS_0673 PF04257 Exodeoxyribonuclease V, gamma subunit VS_0675 PF00580 UvrD/REP helicase N-terminal domain VS_0675 PF12705 PD-(D/E)XK nuclease superfamily VS_0675 PF13361 UvrD-like helicase C-terminal domain VS_0676 PF13538 UvrD-like helicase C-terminal domain VS_0676 PF13604 AAA domain VS_0678 PF00583 Acetyltransferase (GNAT) family VS_0678 PF00696 Amino acid kinase family VS_0679 PF11012 VS_0679 VS_0680 PF03562 MltA specific insert domain VS_0680 PF06725 3D domain VS_0681 PF00899 ThiF family VS_0682 PF02657 Fe-S metabolism associated domain VS_0683 PF00266 Aminotransferase class-V VS_0684 PF02558 Ketopantoate reductase PanE/ApbA VS_0684 PF08546 Ketopantoate reductase PanE/ApbA C terminal VS_0685 PF03502 Nucleoside-specific channel-forming protein, Tsx VS_0687 PF14344 VS_0687 VS_0688 PF07690 Major Facilitator Superfamily VS_0689 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_0690 PF03923 VS_0690 VS_0691 PF05175 Methyltransferase small domain VS_0691 PF08468 Methyltransferase small domain N-terminal VS_0692 PF01722 BolA-like protein VS_0693 PF05896 VS_0693 VS_0693 PF11973 VS_0693 VS_0694 PF03116 VS_0694 VS_0695 PF04205 FMN-binding domain VS_0696 PF02508 VS_0696 VS_0697 PF02508 VS_0697 VS_0698 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_0698 PF00175 Oxidoreductase NAD-binding domain VS_0698 PF00970 Oxidoreductase FAD-binding domain VS_0699 PF02424 ApbE family VS_0700 PF04400 VS_0700 VS_0701 PF00072 Response regulator receiver domain VS_0701 PF00990 GGDEF domain VS_0702 PF00817 impB/mucB/samB family VS_0702 PF11798 IMS family HHH motif VS_0702 PF11799 impB/mucB/samB family C-terminal domain VS_0703 PF00270 DEAD/DEAH box helicase VS_0703 PF00271 Helicase conserved C-terminal domain VS_0703 PF16124 VS_0703 VS_0704 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_0705 PF11101 VS_0705 VS_0706 PF00209 Sodium:neurotransmitter symporter family VS_0707 PF04055 Radical SAM superfamily VS_0707 PF16881 VS_0707 VS_0708 PF03099 Biotin/lipoate A/B protein ligase family VS_0709 PF04359 Protein of unknown function (DUF493) VS_0710 PF00768 D-alanyl-D-alanine carboxypeptidase VS_0710 PF07943 Penicillin-binding protein 5, C-terminal domain VS_0711 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VS_0711 PF05036 Sporulation related domain VS_0712 PF01098 VS_0712 VS_0713 PF00905 Penicillin binding protein transpeptidase domain VS_0713 PF03717 Penicillin-binding Protein dimerisation domain VS_0714 PF02590 Predicted SPOUT methyltransferase VS_0715 PF02410 Oligomerisation domain VS_0716 PF06144 DNA polymerase III, delta subunit VS_0716 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VS_0717 PF04390 Lipopolysaccharide-assembly VS_0718 PF00133 tRNA synthetases class I (I, L, M and V) VS_0718 PF08264 Anticodon-binding domain of tRNA VS_0718 PF13603 Leucyl-tRNA synthetase, Domain 2 VS_0719 PF07295 VS_0719 VS_0720 PF00795 Carbon-nitrogen hydrolase VS_0721 PF00571 CBS domain VS_0721 PF03471 Transporter associated domain VS_0722 PF02130 Uncharacterized protein family UPF0054 VS_0723 PF02562 PhoH-like protein VS_0724 PF00919 Uncharacterized protein family UPF0004 VS_0724 PF01938 TRAM domain VS_0724 PF04055 Radical SAM superfamily VS_0725 PF01494 FAD binding domain VS_0726 PF10282 Lactonase, 7-bladed beta-propeller VS_0746 PF01926 50S ribosome-binding GTPase VS_0746 PF06071 Protein of unknown function (DUF933) VS_0747 PF01195 Peptidyl-tRNA hydrolase VS_0748 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VS_0748 PF14572 Phosphoribosyl synthetase-associated domain VS_0749 PF00288 GHMP kinases N terminal domain VS_0749 PF08544 GHMP kinases C terminal VS_0750 PF03550 Outer membrane lipoprotein LolB VS_0751 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VS_0751 PF01488 Shikimate / quinate 5-dehydrogenase VS_0751 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VS_0752 PF00472 RF-1 domain VS_0752 PF03462 PCRF domain VS_0753 PF13847 Methyltransferase domain VS_0754 PF04247 VS_0754 VS_0755 PF13369 VS_0755 VS_0755 PF13371 Tetratricopeptide repeat VS_0756 PF00793 DAHP synthetase I family VS_0757 PF00149 Calcineurin-like phosphoesterase VS_0757 PF02872 5'-nucleotidase, C-terminal domain VS_0758 PF04073 Aminoacyl-tRNA editing domain VS_0759 PF00849 RNA pseudouridylate synthase VS_0759 PF01479 S4 domain VS_0760 PF01713 Smr domain VS_0764 PF01963 VS_0764 VS_0765 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_0765 PF02838 Glycosyl hydrolase family 20, domain 2 VS_0765 PF03173 Putative carbohydrate binding domain VS_0765 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VS_0766 PF06178 Oligogalacturonate-specific porin protein (KdgM) VS_0767 PF04214 VS_0767 VS_0768 PF00122 E1-E2 ATPase VS_0768 PF00403 Heavy-metal-associated domain VS_0768 PF00702 haloacid dehalogenase-like hydrolase VS_0769 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_0770 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0770 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0771 PF13561 Enoyl-(Acyl carrier protein) reductase VS_0773 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0773 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0774 PF11659 VS_0774 VS_0775 PF03176 MMPL family VS_0777 PF03548 Outer membrane lipoprotein carrier protein LolA VS_0778 PF13279 Thioesterase-like superfamily VS_0779 PF00221 Aromatic amino acid lyase VS_0780 PF00535 Glycosyl transferase family 2 VS_0780 PF03279 VS_0780 VS_0782 PF00501 AMP-binding enzyme VS_0782 PF13193 AMP-binding enzyme C-terminal domain VS_0783 PF04279 VS_0783 VS_0784 PF00550 Phosphopantetheine attachment site VS_0785 PF00550 Phosphopantetheine attachment site VS_0786 PF01553 Acyltransferase VS_0787 PF13723 VS_0787 VS_0789 PF00891 O-methyltransferase VS_0790 PF01494 FAD binding domain VS_0792 PF16538 VS_0792 VS_0792 PF16539 VS_0792 VS_0792 PF16548 VS_0792 VS_0794 PF02169 LPP20 lipoprotein VS_0795 PF05130 FlgN protein VS_0797 PF04316 Anti-sigma-28 factor, FlgM VS_0798 PF13144 SAF-like VS_0799 PF00072 Response regulator receiver domain VS_0799 PF01584 CheW-like domain VS_0800 PF01739 CheR methyltransferase, SAM binding domain VS_0800 PF03705 CheR methyltransferase, all-alpha domain VS_0802 PF00460 Flagella basal body rod protein VS_0802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0803 PF03963 VS_0803 VS_0803 PF13860 FlgD Ig-like domain VS_0803 PF13861 FlgD Tudor-like domain VS_0804 PF00460 Flagella basal body rod protein VS_0804 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0804 PF07559 Flagellar basal body protein FlaE VS_0805 PF00460 Flagella basal body rod protein VS_0805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0806 PF00460 Flagella basal body rod protein VS_0806 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0807 PF02107 VS_0807 VS_0808 PF02119 VS_0808 VS_0809 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VS_0809 PF10135 VS_0809 VS_0810 PF00460 Flagella basal body rod protein VS_0810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_0811 PF00669 Bacterial flagellin N-terminal helical region VS_0812 PF00669 Bacterial flagellin N-terminal helical region VS_0812 PF00700 Bacterial flagellin C-terminal helical region VS_0812 PF07196 Flagellin hook IN motif VS_0813 PF00669 Bacterial flagellin N-terminal helical region VS_0813 PF00700 Bacterial flagellin C-terminal helical region VS_0813 PF07196 Flagellin hook IN motif VS_0814 PF00669 Bacterial flagellin N-terminal helical region VS_0814 PF00700 Bacterial flagellin C-terminal helical region VS_0814 PF07196 Flagellin hook IN motif VS_0815 PF03646 FlaG protein VS_0816 PF02465 VS_0816 VS_0816 PF07195 VS_0816 VS_0816 PF07196 Flagellin hook IN motif VS_0818 PF02561 Flagellar protein FliS VS_0819 PF00158 Sigma-54 interaction domain VS_0819 PF02954 Bacterial regulatory protein, Fis family VS_0819 PF06490 VS_0819 VS_0820 PF00512 His Kinase A (phospho-acceptor) domain VS_0820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0820 PF13188 PAS domain VS_0821 PF00072 Response regulator receiver domain VS_0821 PF00158 Sigma-54 interaction domain VS_0821 PF02954 Bacterial regulatory protein, Fis family VS_0822 PF02049 VS_0822 VS_0823 PF01514 Secretory protein of YscJ/FliF family VS_0823 PF08345 VS_0823 VS_0824 PF01706 FliG C-terminal domain VS_0824 PF14841 FliG middle domain VS_0824 PF14842 FliG N-terminal domain VS_0825 PF02108 VS_0825 VS_0826 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_0827 PF02050 Flagellar FliJ protein VS_0828 PF02120 Flagellar hook-length control protein FliK VS_0829 PF03748 VS_0829 VS_0830 PF01052 Surface presentation of antigens (SPOA) VS_0830 PF02154 Flagellar motor switch protein FliM VS_0831 PF01052 Surface presentation of antigens (SPOA) VS_0832 PF04347 VS_0832 VS_0833 PF00813 VS_0833 VS_0834 PF01313 VS_0834 VS_0835 PF01311 VS_0835 VS_0836 PF01312 FlhB HrpN YscU SpaS Family VS_0837 PF00771 FHIPEP family VS_0838 PF00448 SRP54-type protein, GTPase domain VS_0839 PF10609 ParA/MinD ATPase like VS_0840 PF04539 Sigma-70 region 3 VS_0840 PF04542 Sigma-70 region 2 VS_0840 PF04545 Sigma-70, region 4 VS_0841 PF00072 Response regulator receiver domain VS_0842 PF04344 Chemotaxis phosphatase, CheZ VS_0843 PF01584 CheW-like domain VS_0843 PF01627 Hpt domain VS_0843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0843 PF02895 Signal transducing histidine kinase, homodimeric domain VS_0844 PF00072 Response regulator receiver domain VS_0844 PF01339 CheB methylesterase VS_0845 PF13614 AAA domain VS_0846 PF01584 CheW-like domain VS_0847 PF01584 CheW-like domain VS_0848 PF10975 VS_0848 VS_0849 PF00005 ABC transporter VS_0850 PF03379 VS_0850 VS_0852 PF01578 VS_0852 VS_0853 PF04995 VS_0853 VS_0854 PF03100 CcmE VS_0855 PF01578 VS_0855 VS_0855 PF16327 VS_0855 VS_0856 PF08534 Redoxin VS_0857 PF03918 Cytochrome C biogenesis protein VS_0858 PF14559 Tetratricopeptide repeat VS_0859 PF04333 VS_0859 VS_0860 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_0861 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_0862 PF11859 VS_0862 VS_0863 PF04542 Sigma-70 region 2 VS_0863 PF08281 Sigma-70, region 4 VS_0864 PF00108 Thiolase, N-terminal domain VS_0864 PF02803 Thiolase, C-terminal domain VS_0865 PF00378 Enoyl-CoA hydratase/isomerase family VS_0865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_0865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_0866 PF00675 Insulinase (Peptidase family M16) VS_0866 PF05193 Peptidase M16 inactive domain VS_0866 PF16187 VS_0866 VS_0867 PF00300 Histidine phosphatase superfamily (branch 1) VS_0868 PF01713 Smr domain VS_0869 PF05175 Methyltransferase small domain VS_0870 PF01810 VS_0870 VS_0872 PF02696 VS_0872 VS_0873 PF00072 Response regulator receiver domain VS_0873 PF00486 Transcriptional regulatory protein, C terminal VS_0874 PF00672 HAMP domain VS_0874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0875 PF01547 Bacterial extracellular solute-binding protein VS_0876 PF00528 Binding-protein-dependent transport system inner membrane component VS_0877 PF00528 Binding-protein-dependent transport system inner membrane component VS_0878 PF00005 ABC transporter VS_0879 PF00082 Subtilase family VS_0879 PF05922 Peptidase inhibitor I9 VS_0880 PF01926 50S ribosome-binding GTPase VS_0880 PF13167 VS_0880 VS_0880 PF16360 VS_0880 VS_0881 PF03776 Septum formation topological specificity factor MinE VS_0882 PF13614 AAA domain VS_0883 PF03775 Septum formation inhibitor MinC, C-terminal domain VS_0883 PF05209 Septum formation inhibitor MinC, N-terminal domain VS_0884 PF05166 YcgL domain VS_0885 PF13406 Transglycosylase SLT domain VS_0886 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0886 PF03466 LysR substrate binding domain VS_0887 PF01773 Na+ dependent nucleoside transporter N-terminus VS_0887 PF07662 Na+ dependent nucleoside transporter C-terminus VS_0887 PF07670 Nucleoside recognition VS_0888 PF00999 Sodium/hydrogen exchanger family VS_0889 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VS_0889 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VS_0891 PF13673 Acetyltransferase (GNAT) domain VS_0892 PF01264 Chorismate synthase VS_0893 PF03458 VS_0893 VS_0894 PF04315 VS_0894 VS_0895 PF08891 VS_0895 VS_0896 PF03358 NADPH-dependent FMN reductase VS_0897 PF01266 FAD dependent oxidoreductase VS_0897 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VS_0898 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_0898 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_0900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_0900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_0900 PF11890 Domain of unknown function (DUF3410) VS_0901 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_0901 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_0903 PF01416 tRNA pseudouridine synthase VS_0904 PF01039 Carboxyl transferase domain VS_0905 PF02875 Mur ligase family, glutamate ligase domain VS_0905 PF08245 Mur ligase middle domain VS_0906 PF05036 Sporulation related domain VS_0907 PF02674 VS_0907 VS_0908 PF13522 Glutamine amidotransferase domain VS_0909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_0909 PF03466 LysR substrate binding domain VS_0910 PF00072 Response regulator receiver domain VS_0913 PF04304 VS_0913 VS_0914 PF00156 Phosphoribosyl transferase domain VS_0915 PF12168 VS_0915 VS_0915 PF12169 DNA polymerase III subunits gamma and tau domain III VS_0915 PF12170 DNA polymerase III tau subunit V interacting with alpha VS_0915 PF13177 DNA polymerase III, delta subunit VS_0917 PF02575 YbaB/EbfC DNA-binding family VS_0918 PF02132 RecR protein VS_0918 PF13662 Toprim domain VS_0919 PF00230 Major intrinsic protein VS_0923 PF03692 VS_0923 VS_0924 PF00245 Alkaline phosphatase VS_0925 PF02028 BCCT family transporter VS_0927 PF04187 Protein of unknown function, DUF399 VS_0928 PF13847 Methyltransferase domain VS_0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_0929 PF17201 VS_0929 VS_0931 PF01263 Aldose 1-epimerase VS_0932 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_0932 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_0933 PF01641 SelR domain VS_0934 PF11207 VS_0934 VS_0935 PF07023 VS_0935 VS_0936 PF00710 Asparaginase VS_0937 PF01343 Peptidase family S49 VS_0938 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_0938 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_0939 PF00881 Nitroreductase family VS_0940 PF01131 DNA topoisomerase VS_0940 PF01751 Toprim domain VS_0941 PF11279 VS_0941 VS_0942 PF00106 short chain dehydrogenase VS_0943 PF00850 Histone deacetylase domain VS_0945 PF02082 Transcriptional regulator VS_0946 PF05940 VS_0946 VS_0949 PF00884 Sulfatase VS_0949 PF11893 VS_0949 VS_0950 PF07208 Protein of unknown function (DUF1414) VS_0951 PF04245 VS_0951 VS_0952 PF01627 Hpt domain VS_0954 PF03553 VS_0954 VS_0955 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_0955 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_0956 PF00520 Ion transport protein VS_0957 PF01914 VS_0957 VS_0958 PF00171 Aldehyde dehydrogenase family VS_0958 PF00465 Iron-containing alcohol dehydrogenase VS_0959 PF00106 short chain dehydrogenase VS_0960 PF11993 VS_0960 VS_0961 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_0961 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_0962 PF00462 Glutaredoxin VS_0963 PF13743 Thioredoxin VS_0964 PF00072 Response regulator receiver domain VS_0964 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_0964 PF00512 His Kinase A (phospho-acceptor) domain VS_0964 PF01627 Hpt domain VS_0964 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_0964 PF08447 PAS fold VS_0965 PF00072 Response regulator receiver domain VS_0966 PF03553 VS_0966 VS_0966 PF13726 VS_0966 VS_0967 PF00929 Exonuclease VS_0968 PF00691 OmpA family VS_0969 PF10952 VS_0969 VS_0970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_0971 PF00633 Helix-hairpin-helix motif VS_0971 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_0971 PF10576 Iron-sulfur binding domain of endonuclease III VS_0972 PF02508 VS_0972 VS_0973 PF04205 FMN-binding domain VS_0974 PF03116 VS_0974 VS_0975 PF10531 SLBB domain VS_0975 PF12838 4Fe-4S dicluster domain VS_0976 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VS_0976 PF13375 RnfC Barrel sandwich hybrid domain VS_0977 PF04060 Putative Fe-S cluster VS_0977 PF14697 4Fe-4S dicluster domain VS_0978 PF02508 VS_0978 VS_0980 PF00271 Helicase conserved C-terminal domain VS_0980 PF02151 UvrB/uvrC motif VS_0980 PF04851 Type III restriction enzyme, res subunit VS_0980 PF12344 Ultra-violet resistance protein B VS_0982 PF00072 Response regulator receiver domain VS_0982 PF00158 Sigma-54 interaction domain VS_0982 PF02954 Bacterial regulatory protein, Fis family VS_0983 PF01627 Hpt domain VS_0984 PF01933 Uncharacterised protein family UPF0052 VS_0985 PF04055 Radical SAM superfamily VS_0985 PF06463 Molybdenum Cofactor Synthesis C VS_0985 PF13353 4Fe-4S single cluster domain VS_0986 PF00994 Probable molybdopterin binding domain VS_0987 PF01967 MoaC family VS_0988 PF02597 ThiS family VS_0989 PF02391 MoaE protein VS_0990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_0991 PF00528 Binding-protein-dependent transport system inner membrane component VS_0992 PF00528 Binding-protein-dependent transport system inner membrane component VS_0992 PF12911 VS_0992 VS_0993 PF00005 ABC transporter VS_0993 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0994 PF00005 ABC transporter VS_0994 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_0995 PF13409 Glutathione S-transferase, N-terminal domain VS_0995 PF13410 Glutathione S-transferase, C-terminal domain VS_0996 PF00563 EAL domain VS_0996 PF00990 GGDEF domain VS_0996 PF08269 Cache domain VS_0997 PF01515 Phosphate acetyl/butaryl transferase VS_0997 PF07085 DRTGG domain VS_0997 PF13500 AAA domain VS_0998 PF00871 Acetokinase family VS_0999 PF04217 VS_0999 VS_1000 PF04392 ABC transporter substrate binding protein VS_1001 PF00990 GGDEF domain VS_1002 PF01207 Dihydrouridine synthase (Dus) VS_1003 PF07963 Prokaryotic N-terminal methylation motif VS_1004 PF02810 SEC-C motif VS_1004 PF03695 Uncharacterised protein family (UPF0149) VS_1005 PF02600 Disulfide bond formation protein DsbB VS_1006 PF06450 VS_1006 VS_1007 PF00392 Bacterial regulatory proteins, gntR family VS_1007 PF07840 FadR C-terminal domain VS_1008 PF07308 VS_1008 VS_1009 PF01588 Putative tRNA binding domain VS_1009 PF09334 tRNA synthetases class I (M) VS_1010 PF10609 ParA/MinD ATPase like VS_1011 PF00485 Phosphoribulokinase / Uridine kinase family VS_1012 PF05170 VS_1012 VS_1013 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VS_1013 PF12557 Cob(I)alamin adenosyltransferase N terminal VS_1014 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_1015 PF00916 VS_1015 VS_1016 PF00575 S1 RNA binding domain VS_1016 PF10150 Ribonuclease E/G family VS_1017 PF00849 RNA pseudouridylate synthase VS_1017 PF01479 S4 domain VS_1018 PF02545 Maf-like protein VS_1019 PF02620 VS_1019 VS_1020 PF01783 Ribosomal L32p protein family VS_1021 PF02504 Fatty acid synthesis protein VS_1022 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VS_1022 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VS_1023 PF00698 Acyl transferase domain VS_1024 PF13561 Enoyl-(Acyl carrier protein) reductase VS_1025 PF00550 Phosphopantetheine attachment site VS_1026 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_1026 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_1027 PF01063 Aminotransferase class IV VS_1028 PF02618 YceG-like family VS_1029 PF02223 Thymidylate kinase VS_1030 PF09115 DNA polymerase III, delta subunit, C terminal VS_1030 PF13177 DNA polymerase III, delta subunit VS_1031 PF01026 TatD related DNase VS_1032 PF00367 phosphotransferase system, EIIB VS_1032 PF02378 Phosphotransferase system, EIIC VS_1034 PF00209 Sodium:neurotransmitter symporter family VS_1036 PF01734 Patatin-like phospholipase VS_1037 PF00224 Pyruvate kinase, barrel domain VS_1037 PF02887 Pyruvate kinase, alpha/beta domain VS_1038 PF00480 ROK family VS_1039 PF00072 Response regulator receiver domain VS_1039 PF01584 CheW-like domain VS_1040 PF01336 OB-fold nucleic acid binding domain VS_1040 PF02811 PHP domain VS_1040 PF07733 Bacterial DNA polymerase III alpha subunit VS_1040 PF14579 Helix-hairpin-helix motif VS_1041 PF00817 impB/mucB/samB family VS_1042 PF00154 recA bacterial DNA recombination protein VS_1043 PF00106 short chain dehydrogenase VS_1044 PF01343 Peptidase family S49 VS_1044 PF08496 VS_1044 VS_1045 PF04293 VS_1045 VS_1046 PF04285 VS_1046 VS_1047 PF06798 VS_1047 VS_1047 PF08298 PrkA AAA domain VS_1048 PF06629 VS_1048 VS_1049 PF03887 YfbU domain VS_1050 PF04055 Radical SAM superfamily VS_1050 PF13353 4Fe-4S single cluster domain VS_1051 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) VS_1052 PF01228 Glycine radical VS_1052 PF02901 Pyruvate formate lyase VS_1053 PF11840 VS_1053 VS_1054 PF00005 ABC transporter VS_1055 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1056 PF00528 Binding-protein-dependent transport system inner membrane component VS_1057 PF00528 Binding-protein-dependent transport system inner membrane component VS_1059 PF03372 Endonuclease/Exonuclease/phosphatase family VS_1060 PF00326 Prolyl oligopeptidase family VS_1060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_1061 PF07690 Major Facilitator Superfamily VS_1062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1062 PF00672 HAMP domain VS_1062 PF02743 Cache domain VS_1063 PF08007 Cupin superfamily protein VS_1064 PF10689 VS_1064 VS_1065 PF07445 Primosomal replication protein priB and priC VS_1066 PF01925 VS_1066 VS_1067 PF06733 DEAD_2 VS_1067 PF13307 Helicase C-terminal domain VS_1068 PF13609 Gram-negative porin VS_1069 PF00849 RNA pseudouridylate synthase VS_1071 PF03971 Monomeric isocitrate dehydrogenase VS_1072 PF00313 'Cold-shock' DNA-binding domain VS_1073 PF02617 ATP-dependent Clp protease adaptor protein ClpS VS_1074 PF00004 ATPase family associated with various cellular activities (AAA) VS_1074 PF02861 Clp amino terminal domain VS_1074 PF07724 AAA domain (Cdc48 subfamily) VS_1074 PF10431 C-terminal, D2-small domain, of ClpB protein VS_1075 PF01176 Translation initiation factor 1A / IF-1 VS_1076 PF04376 VS_1076 VS_1076 PF04377 VS_1076 VS_1077 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VS_1078 PF05433 VS_1078 VS_1079 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VS_1080 PF10692 Protein of unknown function (DUF2498) VS_1081 PF01131 DNA topoisomerase VS_1081 PF01396 VS_1081 VS_1081 PF01751 Toprim domain VS_1081 PF08272 Topoisomerase I zinc-ribbon-like VS_1082 PF00483 Nucleotidyl transferase VS_1083 PF00534 Glycosyl transferases group 1 VS_1083 PF08323 Starch synthase catalytic domain VS_1084 PF00561 alpha/beta hydrolase fold VS_1085 PF09413 Domain of unknown function (DUF2007) VS_1086 PF09335 VS_1086 VS_1087 PF04993 TfoX N-terminal domain VS_1087 PF04994 TfoX C-terminal domain VS_1088 PF00356 Bacterial regulatory proteins, lacI family VS_1088 PF13377 Periplasmic binding protein-like domain VS_1089 PF02613 Nitrate reductase delta subunit VS_1091 PF00072 Response regulator receiver domain VS_1091 PF00486 Transcriptional regulatory protein, C terminal VS_1092 PF02698 DUF218 domain VS_1093 PF08241 Methyltransferase domain VS_1094 PF03882 KicB killing factor VS_1094 PF17192 VS_1094 VS_1094 PF17193 VS_1094 VS_1095 PF04288 MukE-like family VS_1096 PF04310 MukB N-terminal VS_1096 PF13558 Putative exonuclease SbcCD, C subunit VS_1096 PF16330 VS_1096 VS_1097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1097 PF02743 Cache domain VS_1098 PF14397 VS_1098 VS_1099 PF14400 VS_1099 VS_1099 PF14402 VS_1099 VS_1100 PF05618 Putative ATP-dependant zinc protease VS_1101 PF08003 Protein of unknown function (DUF1698) VS_1102 PF13649 Methyltransferase domain VS_1103 PF01904 Protein of unknown function DUF72 VS_1104 PF00152 tRNA synthetases class II (D, K and N) VS_1104 PF01336 OB-fold nucleic acid binding domain VS_1104 PF02938 GAD domain VS_1105 PF02075 Crossover junction endodeoxyribonuclease RuvC VS_1106 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1107 PF01330 RuvA N terminal domain VS_1107 PF07499 RuvA, C-terminal domain VS_1107 PF14520 Helix-hairpin-helix domain VS_1108 PF05491 Holliday junction DNA helicase ruvB C-terminus VS_1108 PF05496 Holliday junction DNA helicase ruvB N-terminus VS_1109 PF01654 VS_1109 VS_1110 PF02322 VS_1110 VS_1111 PF09600 VS_1111 VS_1112 PF03061 Thioesterase superfamily VS_1113 PF01618 VS_1113 VS_1114 PF02472 Biopolymer transport protein ExbD/TolR VS_1115 PF06519 TolA C-terminal VS_1116 PF04052 TolB amino-terminal domain VS_1116 PF07676 WD40-like Beta Propeller Repeat VS_1117 PF00691 OmpA family VS_1118 PF13174 Tetratricopeptide repeat VS_1118 PF13432 Tetratricopeptide repeat VS_1118 PF16331 VS_1118 VS_1119 PF02445 Quinolinate synthetase A protein VS_1121 PF07715 TonB-dependent Receptor Plug Domain VS_1122 PF04954 Siderophore-interacting protein VS_1122 PF08021 Siderophore-interacting FAD-binding domain VS_1123 PF01497 Periplasmic binding protein VS_1124 PF01032 FecCD transport family VS_1125 PF01032 FecCD transport family VS_1126 PF00005 ABC transporter VS_1127 PF07885 Ion channel VS_1128 PF03695 Uncharacterised protein family (UPF0149) VS_1129 PF00072 Response regulator receiver domain VS_1129 PF00512 His Kinase A (phospho-acceptor) domain VS_1129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1130 PF06610 VS_1130 VS_1132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1132 PF03466 LysR substrate binding domain VS_1133 PF01266 FAD dependent oxidoreductase VS_1134 PF01738 Dienelactone hydrolase family VS_1135 PF00291 Pyridoxal-phosphate dependent enzyme VS_1136 PF00512 His Kinase A (phospho-acceptor) domain VS_1136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1137 PF00072 Response regulator receiver domain VS_1137 PF00486 Transcriptional regulatory protein, C terminal VS_1138 PF00535 Glycosyl transferase family 2 VS_1139 PF02366 VS_1139 VS_1140 PF04138 VS_1140 VS_1141 PF04055 Radical SAM superfamily VS_1141 PF08497 VS_1141 VS_1141 PF11842 VS_1141 VS_1143 PF14056 VS_1143 VS_1144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1144 PF03466 LysR substrate binding domain VS_1145 PF01717 Cobalamin-independent synthase, Catalytic domain VS_1145 PF08267 Cobalamin-independent synthase, N-terminal domain VS_1146 PF16549 VS_1146 VS_1147 PF03795 YCII-related domain VS_1148 PF03061 Thioesterase superfamily VS_1149 PF04279 VS_1149 VS_1151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1151 PF03466 LysR substrate binding domain VS_1152 PF00155 Aminotransferase class I and II VS_1153 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1155 PF00072 Response regulator receiver domain VS_1155 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1155 PF00512 His Kinase A (phospho-acceptor) domain VS_1155 PF01627 Hpt domain VS_1155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1155 PF13188 PAS domain VS_1156 PF00072 Response regulator receiver domain VS_1156 PF00563 EAL domain VS_1157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1157 PF00672 HAMP domain VS_1160 PF00440 Bacterial regulatory proteins, tetR family VS_1161 PF01066 CDP-alcohol phosphatidyltransferase VS_1162 PF00005 ABC transporter VS_1164 PF13416 Bacterial extracellular solute-binding protein VS_1165 PF03724 META domain VS_1166 PF06945 VS_1166 VS_1168 PF01910 Domain of unknown function DUF77 VS_1172 PF00270 DEAD/DEAH box helicase VS_1172 PF00271 Helicase conserved C-terminal domain VS_1173 PF01810 VS_1173 VS_1175 PF00246 Zinc carboxypeptidase VS_1176 PF03206 VS_1176 VS_1177 PF09493 VS_1177 VS_1178 PF05116 Sucrose-6F-phosphate phosphohydrolase VS_1179 PF00005 ABC transporter VS_1179 PF00571 CBS domain VS_1180 PF00528 Binding-protein-dependent transport system inner membrane component VS_1181 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_1182 PF12680 SnoaL-like domain VS_1183 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1183 PF03466 LysR substrate binding domain VS_1184 PF00005 ABC transporter VS_1184 PF00664 ABC transporter transmembrane region VS_1185 PF00005 ABC transporter VS_1185 PF00664 ABC transporter transmembrane region VS_1186 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_1188 PF07804 HipA-like C-terminal domain VS_1190 PF00805 Pentapeptide repeats (8 copies) VS_1190 PF05729 NACHT domain VS_1190 PF13599 Pentapeptide repeats (9 copies) VS_1191 PF10014 2OG-Fe dioxygenase VS_1192 PF00266 Aminotransferase class-V VS_1193 PF01965 DJ-1/PfpI family VS_1194 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1194 PF03466 LysR substrate binding domain VS_1195 PF00990 GGDEF domain VS_1196 PF10977 VS_1196 VS_1197 PF00990 GGDEF domain VS_1198 PF06942 VS_1198 VS_1199 PF00939 Sodium:sulfate symporter transmembrane region VS_1201 PF02698 DUF218 domain VS_1202 PF00390 Malic enzyme, N-terminal domain VS_1202 PF03949 Malic enzyme, NAD binding domain VS_1203 PF00270 DEAD/DEAH box helicase VS_1203 PF00271 Helicase conserved C-terminal domain VS_1203 PF04408 Helicase associated domain (HA2) VS_1205 PF01259 SAICAR synthetase VS_1206 PF03846 Cell division inhibitor SulA VS_1208 PF08238 Sel1 repeat VS_1209 PF00691 OmpA family VS_1209 PF13488 VS_1209 VS_1210 PF10979 VS_1210 VS_1211 PF11813 VS_1211 VS_1212 PF01565 FAD binding domain VS_1212 PF02913 FAD linked oxidases, C-terminal domain VS_1212 PF13183 4Fe-4S dicluster domain VS_1213 PF04191 Phospholipid methyltransferase VS_1214 PF12119 VS_1214 VS_1216 PF00221 Aromatic amino acid lyase VS_1217 PF01175 Urocanase VS_1217 PF17391 VS_1217 VS_1217 PF17392 VS_1217 VS_1218 PF00491 Arginase family VS_1219 PF01979 Amidohydrolase family VS_1220 PF00392 Bacterial regulatory proteins, gntR family VS_1220 PF07702 UTRA domain VS_1221 PF07070 VS_1221 VS_1225 PF12532 VS_1225 VS_1228 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_1228 PF02824 TGS domain VS_1228 PF03129 Anticodon binding domain VS_1228 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_1229 PF00707 Translation initiation factor IF-3, C-terminal domain VS_1229 PF05198 Translation initiation factor IF-3, N-terminal domain VS_1230 PF01632 Ribosomal protein L35 VS_1231 PF00453 Ribosomal protein L20 VS_1232 PF04266 ASCH domain VS_1234 PF00069 Protein kinase domain VS_1234 PF13855 Leucine rich repeat VS_1235 PF00005 ABC transporter VS_1236 PF00440 Bacterial regulatory proteins, tetR family VS_1237 PF00171 Aldehyde dehydrogenase family VS_1238 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_1239 PF00491 Arginase family VS_1241 PF00474 Sodium:solute symporter family VS_1242 PF01081 KDPG and KHG aldolase VS_1243 PF00294 pfkB family carbohydrate kinase VS_1244 PF07883 Cupin domain VS_1246 PF05426 Alginate lyase VS_1246 PF07940 Heparinase II/III-like protein VS_1247 PF05426 Alginate lyase VS_1247 PF07940 Heparinase II/III-like protein VS_1248 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_1248 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VS_1249 PF01554 MatE VS_1250 PF00392 Bacterial regulatory proteins, gntR family VS_1250 PF07729 FCD domain VS_1251 PF00392 Bacterial regulatory proteins, gntR family VS_1251 PF07729 FCD domain VS_1252 PF00571 CBS domain VS_1252 PF03445 VS_1252 VS_1252 PF10335 VS_1252 VS_1253 PF00929 Exonuclease VS_1254 PF06178 Oligogalacturonate-specific porin protein (KdgM) VS_1255 PF07661 VS_1255 VS_1257 PF00474 Sodium:solute symporter family VS_1259 PF01625 Peptide methionine sulfoxide reductase VS_1260 PF01926 50S ribosome-binding GTPase VS_1260 PF05128 VS_1260 VS_1261 PF01926 50S ribosome-binding GTPase VS_1262 PF01212 Beta-eliminating lyase VS_1263 PF03466 LysR substrate binding domain VS_1265 PF07876 Stress responsive A/B Barrel Domain VS_1266 PF11301 VS_1266 VS_1267 PF01447 Thermolysin metallopeptidase, catalytic domain VS_1267 PF02868 Thermolysin metallopeptidase, alpha-helical domain VS_1267 PF03413 Peptidase propeptide and YPEB domain VS_1267 PF04151 Bacterial pre-peptidase C-terminal domain VS_1267 PF07504 Fungalysin/Thermolysin Propeptide Motif VS_1271 PF13508 Acetyltransferase (GNAT) domain VS_1273 PF04237 YjbR VS_1274 PF00939 Sodium:sulfate symporter transmembrane region VS_1275 PF00027 Cyclic nucleotide-binding domain VS_1275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1276 PF00072 Response regulator receiver domain VS_1277 PF04664 VS_1277 VS_1279 PF00313 'Cold-shock' DNA-binding domain VS_1279 PF05901 VS_1279 VS_1280 PF13420 Acetyltransferase (GNAT) domain VS_1281 PF12688 Tetratrico peptide repeat VS_1282 PF01717 Cobalamin-independent synthase, Catalytic domain VS_1283 PF08908 VS_1283 VS_1284 PF01925 VS_1284 VS_1286 PF04307 VS_1286 VS_1289 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VS_1290 PF01810 VS_1290 VS_1291 PF01235 VS_1291 VS_1296 PF01235 VS_1296 VS_1297 PF12698 ABC-2 family transporter protein VS_1298 PF12698 ABC-2 family transporter protein VS_1299 PF16576 VS_1299 VS_1300 PF02321 Outer membrane efflux protein VS_1302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1302 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VS_1302 PF17203 VS_1302 VS_1303 PF00072 Response regulator receiver domain VS_1303 PF12431 VS_1303 VS_1304 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VS_1304 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VS_1305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VS_1306 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VS_1306 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_1307 PF01966 HD domain VS_1308 PF09905 Uncharacterized conserved protein (DUF2132) VS_1310 PF01925 VS_1310 VS_1311 PF01970 VS_1311 VS_1312 PF07331 VS_1312 VS_1313 PF03401 Tripartite tricarboxylate transporter family receptor VS_1315 PF00072 Response regulator receiver domain VS_1315 PF00512 His Kinase A (phospho-acceptor) domain VS_1315 PF01627 Hpt domain VS_1315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1316 PF00072 Response regulator receiver domain VS_1316 PF01966 HD domain VS_1317 PF00069 Protein kinase domain VS_1318 PF06744 VS_1318 VS_1318 PF06761 VS_1318 VS_1318 PF14331 VS_1318 VS_1319 PF05036 Sporulation related domain VS_1319 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VS_1320 PF05936 VS_1320 VS_1321 PF12790 Type VI secretion lipoprotein VS_1322 PF00498 FHA domain VS_1323 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1324 PF04392 ABC transporter substrate binding protein VS_1325 PF07690 Major Facilitator Superfamily VS_1326 PF00004 ATPase family associated with various cellular activities (AAA) VS_1326 PF07724 AAA domain (Cdc48 subfamily) VS_1326 PF10431 C-terminal, D2-small domain, of ClpB protein VS_1327 PF06996 VS_1327 VS_1328 PF05947 VS_1328 VS_1329 PF04965 Gene 25-like lysozyme VS_1330 PF05943 VS_1330 VS_1331 PF05943 VS_1331 VS_1332 PF05591 VS_1332 VS_1333 PF05638 Protein of unknown function (DUF796) VS_1334 PF06812 VS_1334 VS_1335 PF05488 PAAR motif VS_1337 PF05954 Phage late control gene D protein (GPD) VS_1338 PF05954 Phage late control gene D protein (GPD) VS_1341 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1341 PF13487 HD domain VS_1342 PF00392 Bacterial regulatory proteins, gntR family VS_1342 PF07729 FCD domain VS_1343 PF13714 Phosphoenolpyruvate phosphomutase VS_1344 PF00285 Citrate synthase VS_1345 PF00330 Aconitase family (aconitate hydratase) VS_1345 PF00694 Aconitase C-terminal domain VS_1346 PF04303 PrpF protein VS_1347 PF00501 AMP-binding enzyme VS_1347 PF13193 AMP-binding enzyme C-terminal domain VS_1347 PF16177 VS_1347 VS_1350 PF00583 Acetyltransferase (GNAT) family VS_1351 PF00293 NUDIX domain VS_1351 PF01569 PAP2 superfamily VS_1352 PF08282 haloacid dehalogenase-like hydrolase VS_1353 PF04055 Radical SAM superfamily VS_1353 PF13394 4Fe-4S single cluster domain VS_1354 PF06508 Queuosine biosynthesis protein QueC VS_1355 PF06508 Queuosine biosynthesis protein QueC VS_1357 PF12844 Helix-turn-helix domain VS_1359 PF04851 Type III restriction enzyme, res subunit VS_1362 PF00226 DnaJ domain VS_1368 PF00691 OmpA family VS_1373 PF00691 OmpA family VS_1374 PF15611 VS_1374 VS_1375 PF09623 VS_1375 VS_1376 PF00271 Helicase conserved C-terminal domain VS_1376 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VS_1376 PF04851 Type III restriction enzyme, res subunit VS_1376 PF08463 VS_1376 VS_1377 PF02384 N-6 DNA Methylase VS_1377 PF12161 HsdM N-terminal domain VS_1379 PF01420 Type I restriction modification DNA specificity domain VS_1381 PF07728 AAA domain (dynein-related subfamily) VS_1382 PF10117 VS_1382 VS_1385 PF00270 DEAD/DEAH box helicase VS_1385 PF00271 Helicase conserved C-terminal domain VS_1385 PF09369 VS_1385 VS_1390 PF00990 GGDEF domain VS_1390 PF13181 Tetratricopeptide repeat VS_1390 PF13424 Tetratricopeptide repeat VS_1391 PF11042 VS_1391 VS_1392 PF00691 OmpA family VS_1393 PF02321 Outer membrane efflux protein VS_1394 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VS_1394 PF03160 Calx-beta domain VS_1394 PF13519 von Willebrand factor type A domain VS_1395 PF10672 S-adenosylmethionine-dependent methyltransferase VS_1396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1397 PF00708 Acylphosphatase VS_1398 PF04358 DsrC like protein VS_1399 PF01027 Inhibitor of apoptosis-promoting Bax1 VS_1400 PF00005 ABC transporter VS_1401 PF00528 Binding-protein-dependent transport system inner membrane component VS_1402 PF00528 Binding-protein-dependent transport system inner membrane component VS_1403 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1404 PF10414 Sirohaem synthase dimerisation region VS_1404 PF13241 Putative NAD(P)-binding VS_1404 PF14824 Sirohaem biosynthesis protein central VS_1405 PF04461 Protein of unknown function (DUF520) VS_1406 PF00793 DAHP synthetase I family VS_1407 PF02896 PEP-utilising enzyme, TIM barrel domain VS_1408 PF14539 Domain of unknown function (DUF4442) VS_1410 PF13509 S1 domain VS_1411 PF01189 NOL1/NOP2/sun family VS_1411 PF13636 pre-rRNA processing and ribosome biogenesis VS_1411 PF17125 VS_1411 VS_1412 PF02470 VS_1412 VS_1413 PF04403 VS_1413 VS_1414 PF00005 ABC transporter VS_1414 PF00664 ABC transporter transmembrane region VS_1415 PF13185 GAF domain VS_1416 PF04352 ProQ/FINO family VS_1416 PF17516 VS_1416 VS_1417 PF00595 PDZ domain (Also known as DHR or GLGF) VS_1417 PF03572 Peptidase family S41 VS_1417 PF08180 VS_1417 VS_1417 PF11818 VS_1417 VS_1419 PF01433 Peptidase family M1 VS_1419 PF11940 Domain of unknown function (DUF3458) VS_1419 PF17432 VS_1419 VS_1420 PF11197 VS_1420 VS_1421 PF05088 VS_1421 VS_1422 PF01180 Dihydroorotate dehydrogenase VS_1423 PF07126 VS_1423 VS_1424 PF01170 Putative RNA methylase family UPF0020 VS_1424 PF02926 THUMP domain VS_1424 PF10672 S-adenosylmethionine-dependent methyltransferase VS_1425 PF05768 Glutaredoxin-like domain (DUF836) VS_1426 PF00005 ABC transporter VS_1426 PF12848 ABC transporter VS_1426 PF16326 VS_1426 VS_1427 PF11949 VS_1427 VS_1428 PF04957 Ribosome modulation factor VS_1429 PF07977 FabA-like domain VS_1430 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_1430 PF13654 AAA domain VS_1431 PF06303 Organiser of macrodomain of Terminus of chromosome VS_1431 PF17414 VS_1431 VS_1432 PF12321 VS_1432 VS_1434 PF11185 VS_1434 VS_1435 PF13505 Outer membrane protein beta-barrel domain VS_1441 PF13271 VS_1441 VS_1443 PF13274 VS_1443 VS_1444 PF05016 Plasmid stabilisation system protein VS_1445 PF03693 Uncharacterised protein family (UPF0156) VS_1450 PF01381 Helix-turn-helix VS_1451 PF05144 VS_1451 VS_1452 PF05155 VS_1452 VS_1453 PF02303 Helix-destabilising protein VS_1456 PF00072 Response regulator receiver domain VS_1456 PF00512 His Kinase A (phospho-acceptor) domain VS_1456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1457 PF08495 VS_1457 VS_1457 PF10442 VS_1457 VS_1459 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_1460 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VS_1461 PF05545 VS_1461 VS_1462 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_1462 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VS_1463 PF05751 VS_1463 VS_1464 PF00122 E1-E2 ATPase VS_1464 PF00403 Heavy-metal-associated domain VS_1464 PF00702 haloacid dehalogenase-like hydrolase VS_1464 PF12156 VS_1464 VS_1465 PF03597 VS_1465 VS_1466 PF13386 VS_1466 VS_1467 PF00027 Cyclic nucleotide-binding domain VS_1467 PF13545 Crp-like helix-turn-helix domain VS_1468 PF00582 Universal stress protein family VS_1469 PF01171 PP-loop family VS_1470 PF11205 VS_1470 VS_1472 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VS_1474 PF00005 ABC transporter VS_1474 PF08402 TOBE domain VS_1475 PF00528 Binding-protein-dependent transport system inner membrane component VS_1476 PF00528 Binding-protein-dependent transport system inner membrane component VS_1477 PF13416 Bacterial extracellular solute-binding protein VS_1478 PF13416 Bacterial extracellular solute-binding protein VS_1479 PF00990 GGDEF domain VS_1480 PF02146 Sir2 family VS_1481 PF00909 Ammonium Transporter Family VS_1483 PF01292 Prokaryotic cytochrome b561 VS_1484 PF13247 4Fe-4S dicluster domain VS_1485 PF00384 Molybdopterin oxidoreductase VS_1485 PF01568 Molydopterin dinucleotide binding domain VS_1485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_1486 PF10518 TAT (twin-arginine translocation) pathway signal sequence VS_1487 PF02613 Nitrate reductase delta subunit VS_1488 PF00037 4Fe-4S binding domain VS_1488 PF12838 4Fe-4S dicluster domain VS_1489 PF11748 VS_1489 VS_1490 PF11749 VS_1490 VS_1492 PF02634 FdhD/NarQ family VS_1493 PF00005 ABC transporter VS_1494 PF00005 ABC transporter VS_1495 PF13401 AAA domain VS_1496 PF00924 Mechanosensitive ion channel VS_1497 PF00512 His Kinase A (phospho-acceptor) domain VS_1497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1497 PF17202 VS_1497 VS_1498 PF00072 Response regulator receiver domain VS_1498 PF00158 Sigma-54 interaction domain VS_1498 PF02954 Bacterial regulatory protein, Fis family VS_1499 PF12849 PBP superfamily domain VS_1500 PF00528 Binding-protein-dependent transport system inner membrane component VS_1501 PF00005 ABC transporter VS_1502 PF12804 MobA-like NTP transferase domain VS_1503 PF00994 Probable molybdopterin binding domain VS_1503 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VS_1503 PF03453 MoeA N-terminal region (domain I and II) VS_1503 PF03454 MoeA C-terminal region (domain IV) VS_1504 PF00990 GGDEF domain VS_1504 PF13181 Tetratricopeptide repeat VS_1504 PF13185 GAF domain VS_1506 PF11173 VS_1506 VS_1507 PF00480 ROK family VS_1508 PF03942 VS_1508 VS_1509 PF04116 VS_1509 VS_1510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1511 PF00877 NlpC/P60 family VS_1512 PF12290 VS_1512 VS_1513 PF03881 Fructosamine kinase VS_1514 PF14255 VS_1514 VS_1516 PF00677 Lumazine binding domain VS_1517 PF01554 MatE VS_1518 PF14743 DNA ligase OB-like domain VS_1519 PF13466 STAS domain VS_1520 PF00691 OmpA family VS_1521 PF02563 Polysaccharide biosynthesis/export protein VS_1521 PF10531 SLBB domain VS_1523 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_1524 PF00528 Binding-protein-dependent transport system inner membrane component VS_1525 PF00005 ABC transporter VS_1526 PF01627 Hpt domain VS_1527 PF00072 Response regulator receiver domain VS_1527 PF00158 Sigma-54 interaction domain VS_1527 PF02954 Bacterial regulatory protein, Fis family VS_1528 PF13579 Glycosyl transferase 4-like domain VS_1528 PF13692 Glycosyl transferases group 1 VS_1529 PF04932 VS_1529 VS_1530 PF00132 Bacterial transferase hexapeptide (six repeats) VS_1530 PF14602 Hexapeptide repeat of succinyl-transferase VS_1531 PF13692 Glycosyl transferases group 1 VS_1532 PF02706 Chain length determinant protein VS_1533 PF00534 Glycosyl transferases group 1 VS_1533 PF13439 Glycosyltransferase Family 4 VS_1534 PF13641 Glycosyltransferase like family 2 VS_1535 PF02397 VS_1535 VS_1536 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1536 PF00672 HAMP domain VS_1536 PF17200 VS_1536 VS_1537 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1538 PF03466 LysR substrate binding domain VS_1539 PF16576 VS_1539 VS_1540 PF00873 AcrB/AcrD/AcrF family VS_1541 PF02321 Outer membrane efflux protein VS_1547 PF13302 Acetyltransferase (GNAT) domain VS_1548 PF11066 VS_1548 VS_1550 PF13419 Haloacid dehalogenase-like hydrolase VS_1552 PF08241 Methyltransferase domain VS_1556 PF02371 VS_1556 VS_1558 PF00795 Carbon-nitrogen hydrolase VS_1559 PF04986 VS_1559 VS_1561 PF00528 Binding-protein-dependent transport system inner membrane component VS_1562 PF00528 Binding-protein-dependent transport system inner membrane component VS_1563 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_1564 PF00005 ABC transporter VS_1565 PF00005 ABC transporter VS_1565 PF00664 ABC transporter transmembrane region VS_1566 PF13279 Thioesterase-like superfamily VS_1567 PF01136 VS_1567 VS_1568 PF13410 Glutathione S-transferase, C-terminal domain VS_1568 PF13417 Glutathione S-transferase, N-terminal domain VS_1569 PF01734 Patatin-like phospholipase VS_1570 PF03616 VS_1570 VS_1571 PF14526 Integron-associated effector binding protein VS_1573 PF07073 Modulator of Rho-dependent transcription termination (ROF) VS_1574 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_1576 PF00132 Bacterial transferase hexapeptide (six repeats) VS_1577 PF13561 Enoyl-(Acyl carrier protein) reductase VS_1578 PF12680 SnoaL-like domain VS_1579 PF12710 haloacid dehalogenase-like hydrolase VS_1580 PF02810 SEC-C motif VS_1581 PF03625 Domain of unknown function DUF302 VS_1582 PF13508 Acetyltransferase (GNAT) domain VS_1583 PF13023 HD domain VS_1584 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_1585 PF01810 VS_1585 VS_1586 PF00583 Acetyltransferase (GNAT) family VS_1588 PF00583 Acetyltransferase (GNAT) family VS_1590 PF00293 NUDIX domain VS_1591 PF00753 Metallo-beta-lactamase superfamily VS_1592 PF00583 Acetyltransferase (GNAT) family VS_1593 PF03737 Demethylmenaquinone methyltransferase VS_1599 PF04828 Glutathione-dependent formaldehyde-activating enzyme VS_1600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_1601 PF00849 RNA pseudouridylate synthase VS_1601 PF01479 S4 domain VS_1603 PF03692 VS_1603 VS_1604 PF00293 NUDIX domain VS_1605 PF11964 SpoIIAA-like VS_1606 PF08241 Methyltransferase domain VS_1607 PF13419 Haloacid dehalogenase-like hydrolase VS_1608 PF13420 Acetyltransferase (GNAT) domain VS_1609 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_1609 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_1610 PF04266 ASCH domain VS_1611 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_1612 PF07690 Major Facilitator Superfamily VS_1615 PF11730 VS_1615 VS_1616 PF13508 Acetyltransferase (GNAT) domain VS_1617 PF14284 VS_1617 VS_1618 PF00582 Universal stress protein family VS_1619 PF00875 DNA photolyase VS_1619 PF03441 FAD binding domain of DNA photolyase VS_1620 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VS_1621 PF00106 short chain dehydrogenase VS_1622 PF01163 RIO1 family VS_1623 PF10013 VS_1623 VS_1625 PF13476 AAA domain VS_1625 PF13558 Putative exonuclease SbcCD, C subunit VS_1626 PF00149 Calcineurin-like phosphoesterase VS_1626 PF12320 Type 5 capsule protein repressor C-terminal domain VS_1627 PF13505 Outer membrane protein beta-barrel domain VS_1628 PF00043 Glutathione S-transferase, C-terminal domain VS_1628 PF13417 Glutathione S-transferase, N-terminal domain VS_1629 PF01810 VS_1629 VS_1630 PF00583 Acetyltransferase (GNAT) family VS_1631 PF00990 GGDEF domain VS_1631 PF13188 PAS domain VS_1632 PF13649 Methyltransferase domain VS_1633 PF00593 TonB dependent receptor VS_1633 PF07715 TonB-dependent Receptor Plug Domain VS_1634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1634 PF03466 LysR substrate binding domain VS_1636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1637 PF01047 MarR family VS_1638 PF01545 Cation efflux family VS_1639 PF00884 Sulfatase VS_1640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1640 PF03466 LysR substrate binding domain VS_1641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1641 PF03466 LysR substrate binding domain VS_1642 PF00709 Adenylosuccinate synthetase VS_1643 PF08378 VS_1643 VS_1643 PF13245 Part of AAA domain VS_1644 PF13091 PLD-like domain VS_1645 PF09369 VS_1645 VS_1646 PF00271 Helicase conserved C-terminal domain VS_1648 PF00176 SNF2 family N-terminal domain VS_1648 PF00271 Helicase conserved C-terminal domain VS_1649 PF00145 C-5 cytosine-specific DNA methylase VS_1650 PF00580 UvrD/REP helicase N-terminal domain VS_1650 PF01396 VS_1650 VS_1650 PF13361 UvrD-like helicase C-terminal domain VS_1651 PF13391 VS_1651 VS_1652 PF13489 Methyltransferase domain VS_1653 PF00075 RNase H VS_1654 PF05930 Prophage CP4-57 regulatory protein (AlpA) VS_1655 PF04002 RadC-like JAB domain VS_1656 PF10980 Protein of unknown function (DUF2787) VS_1657 PF10980 Protein of unknown function (DUF2787) VS_1662 PF11726 VS_1662 VS_1665 PF11726 VS_1665 VS_1668 PF05930 Prophage CP4-57 regulatory protein (AlpA) VS_1669 PF00589 Phage integrase family VS_1669 PF13356 Domain of unknown function (DUF4102) VS_1669 PF14659 Phage integrase, N-terminal SAM-like domain VS_1671 PF10881 VS_1671 VS_1673 PF00990 GGDEF domain VS_1674 PF01546 Peptidase family M20/M25/M40 VS_1674 PF07687 Peptidase dimerisation domain VS_1675 PF12975 Domain of unknown function (DUF3859) VS_1676 PF13671 AAA domain VS_1677 PF04204 Homoserine O-succinyltransferase VS_1678 PF13424 Tetratricopeptide repeat VS_1678 PF13432 Tetratricopeptide repeat VS_1679 PF05971 Protein of unknown function (DUF890) VS_1680 PF01863 Protein of unknown function DUF45 VS_1681 PF00462 Glutaredoxin VS_1682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_1682 PF03466 LysR substrate binding domain VS_1683 PF07690 Major Facilitator Superfamily VS_1684 PF07209 VS_1684 VS_1685 PF00990 GGDEF domain VS_1685 PF01590 GAF domain VS_1686 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VS_1687 PF00583 Acetyltransferase (GNAT) family VS_1688 PF08173 VS_1688 VS_1689 PF02322 VS_1689 VS_1690 PF01654 VS_1690 VS_1691 PF00155 Aminotransferase class I and II VS_1691 PF00392 Bacterial regulatory proteins, gntR family VS_1692 PF03067 Chitin binding domain VS_1695 PF00005 ABC transporter VS_1696 PF01032 FecCD transport family VS_1697 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_1698 PF01432 Peptidase family M3 VS_1698 PF08439 Oligopeptidase F VS_1699 PF00300 Histidine phosphatase superfamily (branch 1) VS_1700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VS_1701 PF02654 VS_1701 VS_1702 PF02277 Phosphoribosyltransferase VS_1703 PF01613 Flavin reductase like domain VS_1704 PF08732 VS_1704 VS_1705 PF00375 Sodium:dicarboxylate symporter family VS_1706 PF02698 DUF218 domain VS_1707 PF09831 VS_1707 VS_1708 PF03372 Endonuclease/Exonuclease/phosphatase family VS_1710 PF12625 VS_1710 VS_1710 PF12833 Helix-turn-helix domain VS_1711 PF10974 VS_1711 VS_1712 PF04116 VS_1712 VS_1713 PF00929 Exonuclease VS_1713 PF08411 Exonuclease C-terminal VS_1714 PF03788 VS_1714 VS_1715 PF04172 VS_1715 VS_1716 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_1716 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VS_1717 PF01370 NAD dependent epimerase/dehydratase family VS_1717 PF02222 ATP-grasp domain VS_1718 PF05724 Thiopurine S-methyltransferase (TPMT) VS_1721 PF00216 Bacterial DNA-binding protein VS_1722 PF00892 EamA-like transporter family VS_1723 PF00155 Aminotransferase class I and II VS_1723 PF00392 Bacterial regulatory proteins, gntR family VS_1724 PF00155 Aminotransferase class I and II VS_1725 PF00072 Response regulator receiver domain VS_1725 PF00512 His Kinase A (phospho-acceptor) domain VS_1725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1726 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VS_1727 PF10000 ACT domain VS_1727 PF13840 ACT domain VS_1728 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1728 PF00672 HAMP domain VS_1728 PF02743 Cache domain VS_1730 PF01322 Cytochrome C' VS_1732 PF01292 Prokaryotic cytochrome b561 VS_1733 PF08856 VS_1733 VS_1735 PF00216 Bacterial DNA-binding protein VS_1738 PF03061 Thioesterase superfamily VS_1739 PF02001 VS_1739 VS_1740 PF04400 VS_1740 VS_1741 PF02579 Dinitrogenase iron-molybdenum cofactor VS_1742 PF14317 VS_1742 VS_1743 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_1744 PF01037 AsnC family VS_1744 PF13412 Winged helix-turn-helix DNA-binding VS_1745 PF08238 Sel1 repeat VS_1748 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_1749 PF02152 Dihydroneopterin aldolase VS_1750 PF01227 GTP cyclohydrolase I VS_1751 PF13561 Enoyl-(Acyl carrier protein) reductase VS_1753 PF01734 Patatin-like phospholipase VS_1755 PF11840 VS_1755 VS_1756 PF05638 Protein of unknown function (DUF796) VS_1757 PF13988 VS_1757 VS_1761 PF00561 alpha/beta hydrolase fold VS_1765 PF01588 Putative tRNA binding domain VS_1765 PF03147 Ferredoxin-fold anticodon binding domain VS_1765 PF03483 B3/4 domain VS_1765 PF03484 tRNA synthetase B5 domain VS_1766 PF01409 tRNA synthetases class II core domain (F) VS_1766 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VS_1768 PF17131 VS_1768 VS_1769 PF03176 MMPL family VS_1770 PF00440 Bacterial regulatory proteins, tetR family VS_1774 PF13505 Outer membrane protein beta-barrel domain VS_1775 PF00270 DEAD/DEAH box helicase VS_1775 PF00271 Helicase conserved C-terminal domain VS_1775 PF04408 Helicase associated domain (HA2) VS_1775 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VS_1775 PF11898 VS_1775 VS_1776 PF06629 VS_1776 VS_1778 PF09423 PhoD-like phosphatase VS_1779 PF05099 Tellurite resistance protein TerB VS_1781 PF00486 Transcriptional regulatory protein, C terminal VS_1783 PF03992 Antibiotic biosynthesis monooxygenase VS_1784 PF00929 Exonuclease VS_1785 PF00990 GGDEF domain VS_1785 PF03924 CHASE domain VS_1786 PF10816 VS_1786 VS_1787 PF00012 Hsp70 protein VS_1788 PF00012 Hsp70 protein VS_1788 PF12531 VS_1788 VS_1789 PF12531 VS_1789 VS_1791 PF11163 VS_1791 VS_1792 PF13302 Acetyltransferase (GNAT) domain VS_1793 PF00158 Sigma-54 interaction domain VS_1793 PF00989 PAS fold VS_1794 PF05128 VS_1794 VS_1795 PF04317 VS_1795 VS_1797 PF05681 VS_1797 VS_1797 PF05683 Fumarase C-terminus VS_1798 PF00425 chorismate binding enzyme VS_1798 PF04715 Anthranilate synthase component I, N terminal region VS_1799 PF13505 Outer membrane protein beta-barrel domain VS_1800 PF00072 Response regulator receiver domain VS_1800 PF00512 His Kinase A (phospho-acceptor) domain VS_1800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1801 PF07700 Heme NO binding VS_1802 PF00293 NUDIX domain VS_1803 PF03222 Tryptophan/tyrosine permease family VS_1804 PF03313 VS_1804 VS_1804 PF03315 Serine dehydratase beta chain VS_1805 PF03222 Tryptophan/tyrosine permease family VS_1806 PF01242 6-pyruvoyl tetrahydropterin synthase VS_1807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1807 PF00672 HAMP domain VS_1808 PF00916 VS_1808 VS_1809 PF00152 tRNA synthetases class II (D, K and N) VS_1809 PF01336 OB-fold nucleic acid binding domain VS_1811 PF00089 Trypsin VS_1814 PF00155 Aminotransferase class I and II VS_1814 PF00392 Bacterial regulatory proteins, gntR family VS_1816 PF13487 HD domain VS_1817 PF13385 Concanavalin A-like lectin/glucanases superfamily VS_1818 PF13385 Concanavalin A-like lectin/glucanases superfamily VS_1819 PF00155 Aminotransferase class I and II VS_1820 PF13505 Outer membrane protein beta-barrel domain VS_1821 PF00027 Cyclic nucleotide-binding domain VS_1821 PF00571 CBS domain VS_1821 PF03445 VS_1821 VS_1821 PF10335 VS_1821 VS_1822 PF00929 Exonuclease VS_1823 PF03473 MOSC domain VS_1823 PF03475 3-alpha domain VS_1824 PF00266 Aminotransferase class-V VS_1825 PF06097 VS_1825 VS_1826 PF00027 Cyclic nucleotide-binding domain VS_1826 PF00512 His Kinase A (phospho-acceptor) domain VS_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1827 PF00072 Response regulator receiver domain VS_1829 PF04993 TfoX N-terminal domain VS_1829 PF04994 TfoX C-terminal domain VS_1830 PF08668 HDOD domain VS_1831 PF03956 VS_1831 VS_1833 PF00282 Pyridoxal-dependent decarboxylase conserved domain VS_1834 PF01380 SIS domain VS_1834 PF01418 Helix-turn-helix domain, rpiR family VS_1835 PF00465 Iron-containing alcohol dehydrogenase VS_1836 PF00462 Glutaredoxin VS_1837 PF02080 TrkA-C domain VS_1837 PF06826 VS_1837 VS_1839 PF07055 Enoyl reductase FAD binding domain VS_1839 PF12241 Trans-2-enoyl-CoA reductase catalytic region VS_1839 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VS_1840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_1840 PF02770 Acyl-CoA dehydrogenase, middle domain VS_1840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_1840 PF09317 VS_1840 VS_1841 PF00440 Bacterial regulatory proteins, tetR family VS_1843 PF02321 Outer membrane efflux protein VS_1844 PF00691 OmpA family VS_1845 PF06965 Na+/H+ antiporter 1 VS_1846 PF07143 Hydroxyneurosporene synthase (CrtC) VS_1846 PF17186 VS_1846 VS_1847 PF02687 VS_1847 VS_1848 PF00005 ABC transporter VS_1849 PF01554 MatE VS_1850 PF01370 NAD dependent epimerase/dehydratase family VS_1850 PF11066 VS_1850 VS_1851 PF11140 VS_1851 VS_1852 PF07690 Major Facilitator Superfamily VS_1853 PF00849 RNA pseudouridylate synthase VS_1853 PF01479 S4 domain VS_1854 PF00271 Helicase conserved C-terminal domain VS_1854 PF04851 Type III restriction enzyme, res subunit VS_1855 PF00563 EAL domain VS_1855 PF00990 GGDEF domain VS_1857 PF00072 Response regulator receiver domain VS_1857 PF00486 Transcriptional regulatory protein, C terminal VS_1858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1859 PF09335 VS_1859 VS_1859 PF14067 VS_1859 VS_1860 PF00535 Glycosyl transferase family 2 VS_1861 PF01386 Ribosomal L25p family VS_1864 PF11903 VS_1864 VS_1865 PF15781 VS_1865 VS_1867 PF02627 Carboxymuconolactone decarboxylase family VS_1868 PF04828 Glutathione-dependent formaldehyde-activating enzyme VS_1869 PF01548 VS_1869 VS_1869 PF02371 VS_1869 VS_1873 PF00665 Integrase core domain VS_1873 PF13276 VS_1873 VS_1874 PF01527 Transposase VS_1876 PF00293 NUDIX domain VS_1880 PF01548 VS_1880 VS_1880 PF02371 VS_1880 VS_1881 PF10899 VS_1881 VS_1884 PF00186 Dihydrofolate reductase VS_1886 PF01337 Barstar (barnase inhibitor) VS_1887 PF14281 VS_1887 VS_1890 PF00589 Phage integrase family VS_1890 PF13495 Phage integrase, N-terminal SAM-like domain VS_1891 PF00067 Cytochrome P450 VS_1893 PF11948 VS_1893 VS_1894 PF10985 VS_1894 VS_1896 PF04940 Sensors of blue-light using FAD VS_1897 PF00268 Ribonucleotide reductase, small chain VS_1898 PF00317 Ribonucleotide reductase, all-alpha domain VS_1898 PF02867 Ribonucleotide reductase, barrel domain VS_1898 PF08343 Ribonucleotide reductase N-terminal VS_1899 PF07972 NrdI Flavodoxin like VS_1900 PF00462 Glutaredoxin VS_1901 PF01521 Iron-sulphur cluster biosynthesis VS_1902 PF01458 Uncharacterized protein family (UPF0051) VS_1903 PF00005 ABC transporter VS_1904 PF01458 Uncharacterized protein family (UPF0051) VS_1905 PF00266 Aminotransferase class-V VS_1906 PF02657 Fe-S metabolism associated domain VS_1907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1907 PF00672 HAMP domain VS_1907 PF02743 Cache domain VS_1908 PF02028 BCCT family transporter VS_1909 PF02028 BCCT family transporter VS_1910 PF00072 Response regulator receiver domain VS_1910 PF00196 Bacterial regulatory proteins, luxR family VS_1911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_1911 PF07730 Histidine kinase VS_1911 PF17200 VS_1911 VS_1912 PF06808 VS_1912 VS_1913 PF04290 VS_1913 VS_1914 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_1916 PF11201 VS_1916 VS_1917 PF00753 Metallo-beta-lactamase superfamily VS_1918 PF05951 VS_1918 VS_1919 PF01471 Putative peptidoglycan binding domain VS_1919 PF03734 L,D-transpeptidase catalytic domain VS_1920 PF07433 VS_1920 VS_1921 PF09375 Imelysin VS_1922 PF06537 VS_1922 VS_1923 PF09375 Imelysin VS_1924 PF00925 GTP cyclohydrolase II VS_1926 PF03918 Cytochrome C biogenesis protein VS_1927 PF08534 Redoxin VS_1928 PF01578 VS_1928 VS_1928 PF16327 VS_1928 VS_1930 PF03916 VS_1930 VS_1931 PF13247 4Fe-4S dicluster domain VS_1932 PF14522 Cytochrome c7 VS_1933 PF02335 Cytochrome c552 VS_1934 PF00581 Rhodanese-like domain VS_1935 PF13414 TPR repeat VS_1936 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_1936 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_1937 PF13489 Methyltransferase domain VS_1939 PF00317 Ribonucleotide reductase, all-alpha domain VS_1939 PF02867 Ribonucleotide reductase, barrel domain VS_1939 PF03477 ATP cone domain VS_1940 PF00268 Ribonucleotide reductase, small chain VS_1941 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_1942 PF00994 Probable molybdopterin binding domain VS_1943 PF13084 VS_1943 VS_1944 PF13740 ACT domain VS_1946 PF03435 Saccharopine dehydrogenase VS_1946 PF16653 VS_1946 VS_1947 PF00202 Aminotransferase class-III VS_1947 PF00282 Pyridoxal-dependent decarboxylase conserved domain VS_1953 PF01066 CDP-alcohol phosphatidyltransferase VS_1954 PF08459 UvrC Helix-hairpin-helix N-terminal VS_1954 PF14520 Helix-hairpin-helix domain VS_1955 PF01541 GIY-YIG catalytic domain VS_1955 PF02151 UvrB/uvrC motif VS_1956 PF00072 Response regulator receiver domain VS_1956 PF00196 Bacterial regulatory proteins, luxR family VS_1957 PF00136 DNA polymerase family B VS_1957 PF03104 DNA polymerase family B, exonuclease domain VS_1959 PF01132 Elongation factor P (EF-P) OB domain VS_1959 PF08207 Elongation factor P (EF-P) KOW-like domain VS_1959 PF09285 Elongation factor P, C-terminal VS_1960 PF04269 Protein of unknown function, DUF440 VS_1961 PF00588 SpoU rRNA Methylase family VS_1962 PF00849 RNA pseudouridylate synthase VS_1962 PF01479 S4 domain VS_1963 PF01300 Telomere recombination VS_1964 PF02811 PHP domain VS_1966 PF00425 chorismate binding enzyme VS_1966 PF04715 Anthranilate synthase component I, N terminal region VS_1967 PF00117 Glutamine amidotransferase class-I VS_1968 PF00591 Glycosyl transferase family, a/b domain VS_1968 PF02885 Glycosyl transferase family, helical bundle domain VS_1969 PF00218 Indole-3-glycerol phosphate synthase VS_1969 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VS_1970 PF00291 Pyridoxal-phosphate dependent enzyme VS_1971 PF00290 Tryptophan synthase alpha chain VS_1972 PF01145 SPFH domain / Band 7 family VS_1973 PF01957 NfeD-like C-terminal, partner-binding VS_1974 PF00375 Sodium:dicarboxylate symporter family VS_1976 PF00665 Integrase core domain VS_1977 PF10672 S-adenosylmethionine-dependent methyltransferase VS_1978 PF00849 RNA pseudouridylate synthase VS_1979 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_1979 PF00672 HAMP domain VS_1980 PF00209 Sodium:neurotransmitter symporter family VS_1981 PF13091 PLD-like domain VS_1981 PF13396 VS_1981 VS_1982 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_1984 PF00486 Transcriptional regulatory protein, C terminal VS_1985 PF03352 Methyladenine glycosylase VS_1986 PF00873 AcrB/AcrD/AcrF family VS_1987 PF13437 HlyD family secretion protein VS_1987 PF13533 Biotin-lipoyl like VS_1988 PF13437 HlyD family secretion protein VS_1988 PF13533 Biotin-lipoyl like VS_1989 PF04024 VS_1989 VS_1990 PF06667 VS_1990 VS_1991 PF04012 VS_1991 VS_1992 PF00158 Sigma-54 interaction domain VS_1992 PF02954 Bacterial regulatory protein, Fis family VS_1993 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_1994 PF00528 Binding-protein-dependent transport system inner membrane component VS_1995 PF00528 Binding-protein-dependent transport system inner membrane component VS_1995 PF12911 VS_1995 VS_1996 PF00005 ABC transporter VS_1996 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_1997 PF00005 ABC transporter VS_1998 PF11150 VS_1998 VS_2000 PF11042 VS_2000 VS_2001 PF01368 DHH family VS_2001 PF02833 DHHA2 domain VS_2002 PF11449 VS_2002 VS_2003 PF00384 Molybdopterin oxidoreductase VS_2003 PF01568 Molydopterin dinucleotide binding domain VS_2004 PF03264 NapC/NirT cytochrome c family, N-terminal region VS_2005 PF06796 VS_2005 VS_2006 PF03649 VS_2006 VS_2008 PF01226 Formate/nitrite transporter VS_2010 PF06146 VS_2010 VS_2011 PF13460 NADH(P)-binding VS_2012 PF02698 DUF218 domain VS_2013 PF00265 Thymidine kinase VS_2014 PF01406 tRNA synthetases class I (C) catalytic domain VS_2014 PF09190 DALR domain VS_2015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_2016 PF00149 Calcineurin-like phosphoesterase VS_2017 PF00563 EAL domain VS_2017 PF08668 HDOD domain VS_2018 PF02810 SEC-C motif VS_2019 PF01502 Phosphoribosyl-AMP cyclohydrolase VS_2019 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VS_2020 PF00977 Histidine biosynthesis protein VS_2021 PF00977 Histidine biosynthesis protein VS_2022 PF00117 Glutamine amidotransferase class-I VS_2023 PF00475 Imidazoleglycerol-phosphate dehydratase VS_2023 PF08645 Polynucleotide kinase 3 phosphatase VS_2024 PF00155 Aminotransferase class I and II VS_2025 PF00815 Histidinol dehydrogenase VS_2026 PF01634 ATP phosphoribosyltransferase VS_2026 PF08029 HisG, C-terminal domain VS_2027 PF03553 VS_2027 VS_2029 PF00816 H-NS histone family VS_2030 PF00294 pfkB family carbohydrate kinase VS_2032 PF03054 tRNA methyl transferase VS_2033 PF04356 Protein of unknown function (DUF489) VS_2034 PF00206 Lyase VS_2034 PF08328 Adenylosuccinate lyase C-terminal VS_2035 PF01435 Peptidase family M48 VS_2037 PF13500 AAA domain VS_2038 PF08241 Methyltransferase domain VS_2039 PF00155 Aminotransferase class I and II VS_2040 PF04055 Radical SAM superfamily VS_2040 PF06968 Biotin and Thiamin Synthesis associated domain VS_2041 PF00202 Aminotransferase class-III VS_2042 PF00072 Response regulator receiver domain VS_2043 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_2043 PF02403 Seryl-tRNA synthetase N-terminal domain VS_2044 PF00004 ATPase family associated with various cellular activities (AAA) VS_2044 PF12002 MgsA AAA+ ATPase C terminal VS_2044 PF16193 VS_2044 VS_2045 PF03548 Outer membrane lipoprotein carrier protein LolA VS_2046 PF01580 FtsK/SpoIIIE family VS_2046 PF09397 Ftsk gamma domain VS_2046 PF13491 VS_2046 VS_2047 PF01037 AsnC family VS_2047 PF13412 Winged helix-turn-helix DNA-binding VS_2048 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VS_2048 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VS_2049 PF13679 VS_2049 VS_2050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2050 PF03466 LysR substrate binding domain VS_2052 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VS_2053 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_2054 PF13176 Tetratricopeptide repeat VS_2055 PF06305 VS_2055 VS_2056 PF00216 Bacterial DNA-binding protein VS_2057 PF00575 S1 RNA binding domain VS_2058 PF02224 Cytidylate kinase VS_2059 PF02348 Cytidylyltransferase VS_2060 PF03966 Trm112p-like protein VS_2061 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VS_2062 PF00005 ABC transporter VS_2062 PF00664 ABC transporter transmembrane region VS_2063 PF00753 Metallo-beta-lactamase superfamily VS_2063 PF03772 VS_2063 VS_2064 PF09835 VS_2064 VS_2065 PF02687 VS_2065 VS_2065 PF12704 MacB-like periplasmic core domain VS_2066 PF00005 ABC transporter VS_2067 PF02687 VS_2067 VS_2067 PF12704 MacB-like periplasmic core domain VS_2069 PF00270 DEAD/DEAH box helicase VS_2069 PF00271 Helicase conserved C-terminal domain VS_2069 PF02559 CarD-like/TRCF domain VS_2069 PF03461 TRCF domain VS_2070 PF10972 VS_2070 VS_2071 PF13302 Acetyltransferase (GNAT) domain VS_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2073 PF05728 Uncharacterised protein family (UPF0227) VS_2074 PF01636 Phosphotransferase enzyme family VS_2076 PF13036 Protein of unknown function (DUF3897) VS_2077 PF07233 Protein of unknown function (DUF1425) VS_2079 PF01230 HIT domain VS_2080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_2081 PF09002 Domain of unknown function (DUF1887) VS_2082 PF01048 Phosphorylase superfamily VS_2083 PF00122 E1-E2 ATPase VS_2083 PF00403 Heavy-metal-associated domain VS_2083 PF00702 haloacid dehalogenase-like hydrolase VS_2084 PF01554 MatE VS_2085 PF00571 CBS domain VS_2087 PF02885 Glycosyl transferase family, helical bundle domain VS_2088 PF00440 Bacterial regulatory proteins, tetR family VS_2088 PF14246 AefR-like transcriptional repressor, C-terminal region VS_2090 PF01323 DSBA-like thioredoxin domain VS_2092 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_2093 PF01047 MarR family VS_2094 PF00892 EamA-like transporter family VS_2095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_2096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_2097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2097 PF03466 LysR substrate binding domain VS_2100 PF13533 Biotin-lipoyl like VS_2101 PF00753 Metallo-beta-lactamase superfamily VS_2101 PF14863 Alkyl sulfatase dimerisation VS_2101 PF14864 Alkyl sulfatase C-terminal VS_2103 PF00873 AcrB/AcrD/AcrF family VS_2104 PF13533 Biotin-lipoyl like VS_2105 PF00440 Bacterial regulatory proteins, tetR family VS_2106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2106 PF03466 LysR substrate binding domain VS_2107 PF08803 Putative mono-oxygenase ydhR VS_2109 PF08212 Lipocalin-like domain VS_2110 PF07969 Amidohydrolase family VS_2111 PF07690 Major Facilitator Superfamily VS_2112 PF00005 ABC transporter VS_2113 PF01497 Periplasmic binding protein VS_2114 PF01032 FecCD transport family VS_2115 PF00392 Bacterial regulatory proteins, gntR family VS_2115 PF07729 FCD domain VS_2116 PF00593 TonB dependent receptor VS_2116 PF07715 TonB-dependent Receptor Plug Domain VS_2118 PF13462 Thioredoxin VS_2119 PF13905 Thioredoxin-like VS_2120 PF02683 VS_2120 VS_2120 PF11412 Disulphide bond corrector protein DsbC VS_2120 PF13899 Thioredoxin-like VS_2122 PF12695 Alpha/beta hydrolase family VS_2124 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VS_2125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_2126 PF00578 AhpC/TSA family VS_2126 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_2127 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2127 PF13192 Thioredoxin domain VS_2128 PF01810 VS_2128 VS_2129 PF01037 AsnC family VS_2129 PF13404 AsnC-type helix-turn-helix domain VS_2131 PF01389 OmpA-like transmembrane domain VS_2133 PF13411 MerR HTH family regulatory protein VS_2135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2135 PF03466 LysR substrate binding domain VS_2136 PF00378 Enoyl-CoA hydratase/isomerase family VS_2137 PF03358 NADPH-dependent FMN reductase VS_2138 PF01645 Conserved region in glutamate synthase VS_2138 PF09360 Iron-binding zinc finger CDGSH type VS_2139 PF07273 Protein of unknown function (DUF1439) VS_2141 PF00158 Sigma-54 interaction domain VS_2141 PF02954 Bacterial regulatory protein, Fis family VS_2143 PF04134 VS_2143 VS_2145 PF03109 VS_2145 VS_2146 PF00255 Glutathione peroxidase VS_2147 PF11911 VS_2147 VS_2148 PF01810 VS_2148 VS_2150 PF01943 VS_2150 VS_2151 PF00535 Glycosyl transferase family 2 VS_2152 PF00534 Glycosyl transferases group 1 VS_2153 PF00075 RNase H VS_2153 PF01693 Caulimovirus viroplasmin VS_2156 PF05437 VS_2156 VS_2157 PF03591 VS_2157 VS_2159 PF02311 AraC-like ligand binding domain VS_2159 PF12833 Helix-turn-helix domain VS_2161 PF13489 Methyltransferase domain VS_2164 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VS_2165 PF09619 Type III secretion system lipoprotein chaperone (YscW) VS_2166 PF13622 Thioesterase-like superfamily VS_2168 PF01037 AsnC family VS_2168 PF13412 Winged helix-turn-helix DNA-binding VS_2169 PF00291 Pyridoxal-phosphate dependent enzyme VS_2170 PF06844 Protein of unknown function (DUF1244) VS_2171 PF00873 AcrB/AcrD/AcrF family VS_2172 PF16576 VS_2172 VS_2180 PF04280 Tim44-like domain VS_2181 PF13305 WHG domain VS_2182 PF01553 Acyltransferase VS_2182 PF07690 Major Facilitator Superfamily VS_2183 PF03601 VS_2183 VS_2185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2185 PF03466 LysR substrate binding domain VS_2186 PF00367 phosphotransferase system, EIIB VS_2186 PF02378 Phosphotransferase system, EIIC VS_2187 PF00501 AMP-binding enzyme VS_2188 PF13378 Enolase C-terminal domain-like VS_2189 PF00378 Enoyl-CoA hydratase/isomerase family VS_2190 PF12697 Alpha/beta hydrolase family VS_2191 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_2191 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_2191 PF16582 VS_2191 VS_2192 PF00425 chorismate binding enzyme VS_2193 PF00155 Aminotransferase class I and II VS_2195 PF13023 HD domain VS_2196 PF01966 HD domain VS_2196 PF13286 Phosphohydrolase-associated domain VS_2197 PF03942 VS_2197 VS_2198 PF01694 Rhomboid family VS_2199 PF12836 Helix-hairpin-helix motif VS_2200 PF13616 PPIC-type PPIASE domain VS_2200 PF13624 SurA N-terminal domain VS_2201 PF00216 Bacterial DNA-binding protein VS_2203 PF00004 ATPase family associated with various cellular activities (AAA) VS_2203 PF02190 ATP-dependent protease La (LON) domain VS_2203 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_2204 PF06689 ClpX C4-type zinc finger VS_2204 PF07724 AAA domain (Cdc48 subfamily) VS_2204 PF10431 C-terminal, D2-small domain, of ClpB protein VS_2205 PF00574 Clp protease VS_2206 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2206 PF05697 Bacterial trigger factor protein (TF) VS_2206 PF05698 Bacterial trigger factor protein (TF) C-terminus VS_2207 PF00512 His Kinase A (phospho-acceptor) domain VS_2207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2207 PF02743 Cache domain VS_2208 PF00072 Response regulator receiver domain VS_2208 PF00158 Sigma-54 interaction domain VS_2208 PF02954 Bacterial regulatory protein, Fis family VS_2210 PF06808 VS_2210 VS_2211 PF04290 VS_2211 VS_2212 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_2213 PF03061 Thioesterase superfamily VS_2214 PF01648 4'-phosphopantetheinyl transferase superfamily VS_2215 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_2215 PF00550 Phosphopantetheine attachment site VS_2215 PF00698 Acyl transferase domain VS_2215 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_2215 PF08659 KR domain VS_2215 PF14765 Polyketide synthase dehydratase VS_2215 PF16197 VS_2215 VS_2217 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_2217 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_2217 PF07977 FabA-like domain VS_2219 PF00570 HRDC domain VS_2219 PF01612 3'-5' exonuclease VS_2220 PF00501 AMP-binding enzyme VS_2220 PF13193 AMP-binding enzyme C-terminal domain VS_2221 PF12697 Alpha/beta hydrolase family VS_2222 PF03843 VS_2222 VS_2225 PF00814 Glycoprotease family VS_2226 PF04851 Type III restriction enzyme, res subunit VS_2226 PF13307 Helicase C-terminal domain VS_2228 PF00551 Formyl transferase VS_2228 PF01842 ACT domain VS_2229 PF06185 YecM protein VS_2230 PF00750 tRNA synthetases class I (R) VS_2230 PF03485 Arginyl tRNA synthetase N terminal domain VS_2230 PF05746 DALR anticodon binding domain VS_2231 PF01230 HIT domain VS_2232 PF09012 FeoC like transcriptional regulator VS_2233 PF02421 Ferrous iron transport protein B VS_2233 PF07664 VS_2233 VS_2233 PF07670 Nucleoside recognition VS_2234 PF04023 FeoA domain VS_2236 PF07494 Two component regulator propeller VS_2236 PF12833 Helix-turn-helix domain VS_2237 PF01297 Periplasmic solute binding protein family VS_2238 PF00005 ABC transporter VS_2239 PF00950 VS_2239 VS_2240 PF00549 CoA-ligase VS_2240 PF02629 CoA binding domain VS_2241 PF00549 CoA-ligase VS_2241 PF08442 ATP-grasp domain VS_2242 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_2242 PF00364 Biotin-requiring enzyme VS_2242 PF02817 e3 binding domain VS_2243 PF00676 Dehydrogenase E1 component VS_2243 PF02779 Transketolase, pyrimidine binding domain VS_2243 PF16078 VS_2243 VS_2243 PF16870 VS_2243 VS_2244 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_2244 PF13534 4Fe-4S dicluster domain VS_2246 PF00890 FAD binding domain VS_2246 PF02910 Fumarate reductase flavoprotein C-term VS_2247 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_2248 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_2249 PF00285 Citrate synthase VS_2250 PF01784 NIF3 (NGG1p interacting factor 3) VS_2251 PF08907 VS_2251 VS_2252 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_2252 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_2252 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_2252 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_2253 PF03925 SeqA protein VS_2253 PF17206 VS_2253 VS_2254 PF12697 Alpha/beta hydrolase family VS_2256 PF00258 Flavodoxin VS_2257 PF14539 Domain of unknown function (DUF4442) VS_2258 PF01475 Ferric uptake regulator family VS_2259 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_2259 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VS_2260 PF00367 phosphotransferase system, EIIB VS_2260 PF02378 Phosphotransferase system, EIIC VS_2261 PF01979 Amidohydrolase family VS_2262 PF00480 ROK family VS_2263 PF00999 Sodium/hydrogen exchanger family VS_2263 PF02254 TrkA-N domain VS_2264 PF00733 Asparagine synthase VS_2264 PF13537 Glutamine amidotransferase domain VS_2265 PF02357 Transcription termination factor nusG VS_2266 PF00854 POT family VS_2267 PF00762 Ferrochelatase VS_2268 PF00406 Adenylate kinase VS_2268 PF05191 Adenylate kinase, active site lid VS_2269 PF00183 Hsp90 protein VS_2269 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2270 PF00486 Transcriptional regulatory protein, C terminal VS_2271 PF17323 VS_2271 VS_2272 PF10262 Rdx family VS_2273 PF12850 Calcineurin-like phosphoesterase superfamily domain VS_2274 PF00571 CBS domain VS_2276 PF07556 VS_2276 VS_2277 PF07556 VS_2277 VS_2278 PF01370 NAD dependent epimerase/dehydratase family VS_2278 PF08338 Domain of unknown function (DUF1731) VS_2279 PF00106 short chain dehydrogenase VS_2280 PF00085 Thioredoxin VS_2280 PF14559 Tetratricopeptide repeat VS_2280 PF14561 Tetratricopeptide repeat VS_2281 PF01145 SPFH domain / Band 7 family VS_2282 PF01957 NfeD-like C-terminal, partner-binding VS_2283 PF00376 MerR family regulatory protein VS_2283 PF09278 MerR, DNA binding VS_2285 PF13609 Gram-negative porin VS_2286 PF00533 BRCA1 C Terminus (BRCT) domain VS_2286 PF01653 NAD-dependent DNA ligase adenylation domain VS_2286 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VS_2286 PF03120 NAD-dependent DNA ligase OB-fold domain VS_2286 PF12826 Helix-hairpin-helix motif VS_2286 PF14520 Helix-hairpin-helix domain VS_2287 PF04354 ZipA, C-terminal FtsZ-binding domain VS_2288 PF07264 Etoposide-induced protein 2 VS_2289 PF00291 Pyridoxal-phosphate dependent enzyme VS_2290 PF00381 PTS HPr component phosphorylation site VS_2291 PF00391 PEP-utilising enzyme, mobile domain VS_2291 PF02896 PEP-utilising enzyme, TIM barrel domain VS_2291 PF05524 PEP-utilising enzyme, N-terminal VS_2292 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_2293 PF00669 Bacterial flagellin N-terminal helical region VS_2293 PF00700 Bacterial flagellin C-terminal helical region VS_2293 PF07196 Flagellin hook IN motif VS_2294 PF00669 Bacterial flagellin N-terminal helical region VS_2294 PF00700 Bacterial flagellin C-terminal helical region VS_2294 PF07196 Flagellin hook IN motif VS_2295 PF04261 Dyp-type peroxidase family VS_2296 PF11143 VS_2296 VS_2297 PF11169 VS_2297 VS_2298 PF13698 VS_2298 VS_2299 PF09904 Winged helix-turn helix VS_2300 PF03960 ArsC family VS_2301 PF01546 Peptidase family M20/M25/M40 VS_2301 PF07687 Peptidase dimerisation domain VS_2302 PF02557 D-alanyl-D-alanine carboxypeptidase VS_2303 PF11446 VS_2303 VS_2304 PF06804 NlpB/DapX lipoprotein VS_2305 PF00701 Dihydrodipicolinate synthetase family VS_2306 PF13740 ACT domain VS_2307 PF00578 AhpC/TSA family VS_2308 PF01594 VS_2308 VS_2310 PF01206 Sulfurtransferase TusA VS_2311 PF01435 Peptidase family M48 VS_2311 PF14559 Tetratricopeptide repeat VS_2312 PF03960 ArsC family VS_2313 PF03358 NADPH-dependent FMN reductase VS_2314 PF09842 VS_2314 VS_2315 PF09839 VS_2315 VS_2316 PF00860 Permease family VS_2317 PF14681 Uracil phosphoribosyltransferase VS_2318 PF00586 AIR synthase related protein, N-terminal domain VS_2318 PF02769 AIR synthase related protein, C-terminal domain VS_2319 PF00551 Formyl transferase VS_2320 PF13230 Glutamine amidotransferases class-II VS_2321 PF13580 SIS domain VS_2322 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_2322 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_2322 PF09317 VS_2322 VS_2324 PF00929 Exonuclease VS_2325 PF00075 RNase H VS_2326 PF00665 Integrase core domain VS_2328 PF08241 Methyltransferase domain VS_2329 PF00753 Metallo-beta-lactamase superfamily VS_2329 PF16123 VS_2329 VS_2330 PF01464 Transglycosylase SLT domain VS_2330 PF01476 LysM domain VS_2331 PF06930 VS_2331 VS_2332 PF03372 Endonuclease/Exonuclease/phosphatase family VS_2333 PF00543 Nitrogen regulatory protein P-II VS_2334 PF00034 Cytochrome c VS_2335 PF01171 PP-loop family VS_2335 PF09179 TilS substrate binding domain VS_2335 PF11734 TilS substrate C-terminal domain VS_2336 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VS_2337 PF01336 OB-fold nucleic acid binding domain VS_2337 PF02811 PHP domain VS_2337 PF07733 Bacterial DNA polymerase III alpha subunit VS_2337 PF14579 Helix-hairpin-helix motif VS_2338 PF01351 Ribonuclease HII VS_2339 PF02684 VS_2339 VS_2340 PF00132 Bacterial transferase hexapeptide (six repeats) VS_2340 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VS_2341 PF07977 FabA-like domain VS_2342 PF00132 Bacterial transferase hexapeptide (six repeats) VS_2342 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VS_2342 PF14602 Hexapeptide repeat of succinyl-transferase VS_2343 PF03938 Outer membrane protein (OmpH-like) VS_2344 PF01103 Surface antigen VS_2344 PF07244 Surface antigen variable number repeat VS_2345 PF00595 PDZ domain (Also known as DHR or GLGF) VS_2345 PF02163 Peptidase family M50 VS_2346 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VS_2346 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VS_2346 PF13288 DXP reductoisomerase C-terminal domain VS_2348 PF01148 Cytidylyltransferase family VS_2349 PF01255 Putative undecaprenyl diphosphate synthase VS_2350 PF01765 Ribosome recycling factor VS_2351 PF00696 Amino acid kinase family VS_2352 PF00889 Elongation factor TS VS_2353 PF00318 Ribosomal protein S2 VS_2354 PF00557 Metallopeptidase family M24 VS_2355 PF01842 ACT domain VS_2355 PF01909 Nucleotidyltransferase domain VS_2355 PF01966 HD domain VS_2355 PF08335 GlnD PII-uridylyltransferase VS_2356 PF11944 VS_2356 VS_2357 PF00849 RNA pseudouridylate synthase VS_2358 PF04287 tRNA pseudouridine synthase C VS_2359 PF12069 VS_2359 VS_2360 PF11743 VS_2360 VS_2361 PF13302 Acetyltransferase (GNAT) domain VS_2364 PF02639 VS_2364 VS_2365 PF03806 VS_2365 VS_2366 PF01197 Ribosomal protein L31 VS_2367 PF01980 Uncharacterised protein family UPF0066 VS_2368 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_2368 PF03129 Anticodon binding domain VS_2368 PF04073 Aminoacyl-tRNA editing domain VS_2369 PF04391 VS_2369 VS_2370 PF06786 VS_2370 VS_2371 PF14056 VS_2371 VS_2373 PF00464 Serine hydroxymethyltransferase VS_2374 PF02588 VS_2374 VS_2375 PF00486 Transcriptional regulatory protein, C terminal VS_2377 PF00128 Alpha amylase, catalytic domain VS_2377 PF16657 VS_2377 VS_2378 PF00367 phosphotransferase system, EIIB VS_2378 PF02378 Phosphotransferase system, EIIC VS_2379 PF00356 Bacterial regulatory proteins, lacI family VS_2379 PF13377 Periplasmic binding protein-like domain VS_2380 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme VS_2381 PF13242 HAD-hyrolase-like VS_2382 PF00005 ABC transporter VS_2382 PF09383 NIL domain VS_2383 PF00528 Binding-protein-dependent transport system inner membrane component VS_2384 PF03180 NLPA lipoprotein VS_2386 PF00665 Integrase core domain VS_2388 PF10071 VS_2388 VS_2389 PF07348 Syd protein (SUKH-2) VS_2390 PF14489 QueF-like protein VS_2390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VS_2392 PF00990 GGDEF domain VS_2393 PF03641 Possible lysine decarboxylase VS_2393 PF11892 Domain of unknown function (DUF3412) VS_2393 PF14793 Domain of unknown function (DUF4478) VS_2394 PF01367 5'-3' exonuclease, C-terminal SAM fold VS_2394 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VS_2395 PF00593 TonB dependent receptor VS_2395 PF07715 TonB-dependent Receptor Plug Domain VS_2396 PF01728 FtsJ-like methyltransferase VS_2397 PF04241 VS_2397 VS_2398 PF00561 alpha/beta hydrolase fold VS_2399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2399 PF03466 LysR substrate binding domain VS_2401 PF02568 Thiamine biosynthesis protein (ThiI) VS_2401 PF02926 THUMP domain VS_2402 PF00691 OmpA family VS_2402 PF13677 VS_2402 VS_2403 PF01618 VS_2403 VS_2404 PF02609 Exonuclease VII small subunit VS_2405 PF00348 Polyprenyl synthetase VS_2406 PF02779 Transketolase, pyrimidine binding domain VS_2406 PF02780 Transketolase, C-terminal domain VS_2406 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VS_2407 PF04608 Phosphatidylglycerophosphatase A VS_2408 PF00586 AIR synthase related protein, N-terminal domain VS_2408 PF02769 AIR synthase related protein, C-terminal domain VS_2409 PF01029 NusB family VS_2410 PF00885 6,7-dimethyl-8-ribityllumazine synthase VS_2411 PF00925 GTP cyclohydrolase II VS_2411 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VS_2412 PF00677 Lumazine binding domain VS_2413 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_2413 PF01872 RibD C-terminal domain VS_2414 PF03477 ATP cone domain VS_2415 PF00171 Aldehyde dehydrogenase family VS_2416 PF00696 Amino acid kinase family VS_2416 PF01472 PUA domain VS_2417 PF07417 Transcriptional regulator Crl VS_2418 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VS_2419 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VS_2420 PF00156 Phosphoribosyl transferase domain VS_2421 PF00860 Permease family VS_2422 PF01546 Peptidase family M20/M25/M40 VS_2422 PF07687 Peptidase dimerisation domain VS_2423 PF11810 VS_2423 VS_2424 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_2425 PF12286 VS_2425 VS_2426 PF05940 VS_2426 VS_2427 PF06094 AIG2-like family VS_2428 PF03497 Anthrax toxin LF subunit VS_2429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2429 PF03466 LysR substrate binding domain VS_2430 PF02417 VS_2430 VS_2431 PF08241 Methyltransferase domain VS_2432 PF00535 Glycosyl transferase family 2 VS_2434 PF13181 Tetratricopeptide repeat VS_2434 PF13374 Tetratricopeptide repeat VS_2434 PF14559 Tetratricopeptide repeat VS_2435 PF00482 Type II secretion system (T2SS), protein F VS_2436 PF00482 Type II secretion system (T2SS), protein F VS_2437 PF00437 Type II/IV secretion system protein VS_2438 PF13614 AAA domain VS_2439 PF07811 VS_2439 VS_2440 PF07811 VS_2440 VS_2441 PF13400 VS_2441 VS_2443 PF00263 VS_2443 VS_2443 PF04972 BON domain VS_2443 PF13629 VS_2443 VS_2444 PF08666 SAF domain VS_2444 PF16976 VS_2444 VS_2446 PF01478 Type IV leader peptidase family VS_2448 PF12833 Helix-turn-helix domain VS_2450 PF00501 AMP-binding enzyme VS_2451 PF06568 VS_2451 VS_2452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2452 PF03466 LysR substrate binding domain VS_2453 PF09905 Uncharacterized conserved protein (DUF2132) VS_2454 PF00009 Elongation factor Tu GTP binding domain VS_2454 PF00679 Elongation factor G C-terminus VS_2454 PF03144 Elongation factor Tu domain 2 VS_2454 PF03764 Elongation factor G, domain IV VS_2454 PF14492 Elongation Factor G, domain II VS_2456 PF13481 AAA domain VS_2456 PF13541 Subunit ChlI of Mg-chelatase VS_2457 PF07238 PilZ domain VS_2458 PF12710 haloacid dehalogenase-like hydrolase VS_2459 PF10144 VS_2459 VS_2460 PF01048 Phosphorylase superfamily VS_2461 PF01676 Metalloenzyme superfamily VS_2462 PF00591 Glycosyl transferase family, a/b domain VS_2462 PF02885 Glycosyl transferase family, helical bundle domain VS_2462 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VS_2463 PF01791 DeoC/LacD family aldolase VS_2464 PF01773 Na+ dependent nucleoside transporter N-terminus VS_2464 PF07662 Na+ dependent nucleoside transporter C-terminus VS_2464 PF07670 Nucleoside recognition VS_2465 PF01026 TatD related DNase VS_2466 PF17320 VS_2466 VS_2467 PF00009 Elongation factor Tu GTP binding domain VS_2467 PF03144 Elongation factor Tu domain 2 VS_2467 PF16658 VS_2467 VS_2468 PF00583 Acetyltransferase (GNAT) family VS_2469 PF03603 DNA polymerase III psi subunit VS_2470 PF00583 Acetyltransferase (GNAT) family VS_2471 PF02036 SCP-2 sterol transfer family VS_2472 PF00563 EAL domain VS_2472 PF00990 GGDEF domain VS_2472 PF08448 PAS fold VS_2472 PF13188 PAS domain VS_2473 PF01136 VS_2473 VS_2474 PF01136 VS_2474 VS_2475 PF01554 MatE VS_2476 PF01047 MarR family VS_2478 PF00013 KH domain VS_2478 PF00575 S1 RNA binding domain VS_2478 PF01138 3' exoribonuclease family, domain 1 VS_2478 PF03725 3' exoribonuclease family, domain 2 VS_2478 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VS_2479 PF00312 Ribosomal protein S15 VS_2480 PF01509 TruB family pseudouridylate synthase (N terminal domain) VS_2480 PF09157 Pseudouridine synthase II TruB, C-terminal VS_2480 PF16198 VS_2480 VS_2481 PF02033 Ribosome-binding factor A VS_2482 PF00009 Elongation factor Tu GTP binding domain VS_2482 PF04760 Translation initiation factor IF-2, N-terminal region VS_2482 PF08364 VS_2482 VS_2482 PF11987 Translation-initiation factor 2 VS_2483 PF08529 NusA N-terminal domain VS_2483 PF13184 NusA-like KH domain VS_2483 PF14520 Helix-hairpin-helix domain VS_2484 PF02576 Uncharacterised BCR, YhbC family COG0779 VS_2484 PF17384 VS_2484 VS_2487 PF03840 Preprotein translocase SecG subunit VS_2488 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_2488 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_2488 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_2488 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_2489 PF00809 Pterin binding enzyme VS_2490 PF00004 ATPase family associated with various cellular activities (AAA) VS_2490 PF01434 Peptidase family M41 VS_2490 PF06480 FtsH Extracellular VS_2491 PF01728 FtsJ-like methyltransferase VS_2492 PF01985 CRS1 / YhbY (CRM) domain VS_2493 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_2493 PF03449 Transcription elongation factor, N-terminal VS_2494 PF13609 Gram-negative porin VS_2495 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VS_2496 PF01769 Divalent cation transporter VS_2497 PF00579 tRNA synthetases class I (W and Y) VS_2498 PF01551 Peptidase family M23 VS_2498 PF08525 VS_2498 VS_2499 PF00873 AcrB/AcrD/AcrF family VS_2500 PF16576 VS_2500 VS_2501 PF01521 Iron-sulphur cluster biosynthesis VS_2502 PF00202 Aminotransferase class-III VS_2503 PF01594 VS_2503 VS_2504 PF05175 Methyltransferase small domain VS_2504 PF08468 Methyltransferase small domain N-terminal VS_2505 PF00072 Response regulator receiver domain VS_2505 PF00512 His Kinase A (phospho-acceptor) domain VS_2505 PF00672 HAMP domain VS_2505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2505 PF13188 PAS domain VS_2506 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_2507 PF00528 Binding-protein-dependent transport system inner membrane component VS_2508 PF00528 Binding-protein-dependent transport system inner membrane component VS_2508 PF12911 VS_2508 VS_2509 PF00005 ABC transporter VS_2509 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_2510 PF00005 ABC transporter VS_2510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_2511 PF00759 Glycosyl hydrolase family 9 VS_2511 PF02927 N-terminal ig-like domain of cellulase VS_2512 PF01869 BadF/BadG/BcrA/BcrD ATPase family VS_2513 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_2513 PF02838 Glycosyl hydrolase family 20, domain 2 VS_2514 PF06165 Glycosyltransferase family 36 VS_2514 PF17167 VS_2514 VS_2515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_2515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_2515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_2515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_2516 PF00005 ABC transporter VS_2517 PF00528 Binding-protein-dependent transport system inner membrane component VS_2518 PF13343 Bacterial extracellular solute-binding protein VS_2519 PF00909 Ammonium Transporter Family VS_2520 PF00543 Nitrogen regulatory protein P-II VS_2521 PF06062 VS_2521 VS_2522 PF00330 Aconitase family (aconitate hydratase) VS_2522 PF06434 Aconitate hydratase 2 N-terminus VS_2522 PF11791 Aconitate B N-terminal domain VS_2523 PF01734 Patatin-like phospholipase VS_2524 PF00905 Penicillin binding protein transpeptidase domain VS_2524 PF00912 Transglycosylase VS_2524 PF14814 Bifunctional transglycosylase second domain VS_2526 PF00270 DEAD/DEAH box helicase VS_2526 PF00271 Helicase conserved C-terminal domain VS_2526 PF04408 Helicase associated domain (HA2) VS_2526 PF08482 VS_2526 VS_2527 PF03749 Sugar fermentation stimulation protein VS_2528 PF01258 Prokaryotic dksA/traR C4-type zinc finger VS_2529 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_2530 PF01743 Poly A polymerase head domain VS_2530 PF12626 Polymerase A arginine-rich C-terminus VS_2530 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_2531 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_2532 PF02548 Ketopantoate hydroxymethyltransferase VS_2533 PF02569 Pantoate-beta-alanine ligase VS_2534 PF01061 VS_2534 VS_2535 PF00005 ABC transporter VS_2536 PF00916 VS_2536 VS_2536 PF01740 STAS domain VS_2537 PF00484 Carbonic anhydrase VS_2538 PF00156 Phosphoribosyl transferase domain VS_2539 PF00440 Bacterial regulatory proteins, tetR family VS_2540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_2540 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2541 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_2541 PF00364 Biotin-requiring enzyme VS_2541 PF02817 e3 binding domain VS_2542 PF00456 Transketolase, thiamine diphosphate binding domain VS_2543 PF00392 Bacterial regulatory proteins, gntR family VS_2543 PF07729 FCD domain VS_2545 PF01510 N-acetylmuramoyl-L-alanine amidase VS_2546 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VS_2546 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VS_2547 PF00114 Pilin (bacterial filament) VS_2547 PF07963 Prokaryotic N-terminal methylation motif VS_2548 PF00437 Type II/IV secretion system protein VS_2548 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_2549 PF00482 Type II secretion system (T2SS), protein F VS_2550 PF01478 Type IV leader peptidase family VS_2550 PF06750 VS_2550 VS_2551 PF01121 Dephospho-CoA kinase VS_2552 PF01121 Dephospho-CoA kinase VS_2553 PF07072 Protein of unknown function (DUF1342) VS_2554 PF03884 Domain of unknown function (DUF329) VS_2555 PF01245 Ribosomal protein L19 VS_2556 PF01746 tRNA (Guanine-1)-methyltransferase VS_2557 PF01782 RimM N-terminal domain VS_2557 PF05239 PRC-barrel domain VS_2558 PF00886 Ribosomal protein S16 VS_2559 PF00448 SRP54-type protein, GTPase domain VS_2559 PF02881 SRP54-type protein, helical bundle domain VS_2559 PF02978 Signal peptide binding domain VS_2560 PF01578 VS_2560 VS_2561 PF00571 CBS domain VS_2561 PF01595 VS_2561 VS_2561 PF03471 Transporter associated domain VS_2562 PF02664 S-Ribosylhomocysteinase (LuxS) VS_2564 PF04262 Glutamate-cysteine ligase VS_2565 PF00675 Insulinase (Peptidase family M16) VS_2565 PF05193 Peptidase M16 inactive domain VS_2566 PF09335 VS_2566 VS_2567 PF08240 Alcohol dehydrogenase GroES-like domain VS_2567 PF13602 Zinc-binding dehydrogenase VS_2568 PF03977 VS_2568 VS_2569 PF00364 Biotin-requiring enzyme VS_2569 PF00682 HMGL-like VS_2569 PF02436 Conserved carboxylase domain VS_2570 PF04277 VS_2570 VS_2581 PF02599 Global regulator protein family VS_2582 PF00696 Amino acid kinase family VS_2583 PF01411 tRNA synthetases class II (A) VS_2583 PF02272 DHHA1 domain VS_2583 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_2585 PF00128 Alpha amylase, catalytic domain VS_2585 PF02806 Alpha amylase, C-terminal all-beta domain VS_2586 PF00005 ABC transporter VS_2586 PF08402 TOBE domain VS_2588 PF00132 Bacterial transferase hexapeptide (six repeats) VS_2589 PF16941 VS_2589 VS_2590 PF13416 Bacterial extracellular solute-binding protein VS_2591 PF00528 Binding-protein-dependent transport system inner membrane component VS_2592 PF00528 Binding-protein-dependent transport system inner membrane component VS_2593 PF00128 Alpha amylase, catalytic domain VS_2593 PF02903 Alpha amylase, N-terminal ig-like domain VS_2594 PF00480 ROK family VS_2595 PF01978 Sugar-specific transcriptional regulator TrmB VS_2595 PF11495 Archaeal transcriptional regulator TrmB VS_2596 PF00154 recA bacterial DNA recombination protein VS_2597 PF02464 Competence-damaged protein VS_2598 PF00488 MutS domain V VS_2598 PF01624 MutS domain I VS_2598 PF05188 MutS domain II VS_2598 PF05190 MutS family domain IV VS_2598 PF05192 MutS domain III VS_2599 PF00140 Sigma-70 factor, region 1 VS_2599 PF04539 Sigma-70 region 3 VS_2599 PF04542 Sigma-70 region 2 VS_2599 PF04545 Sigma-70, region 4 VS_2600 PF01476 LysM domain VS_2600 PF01551 Peptidase family M23 VS_2601 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VS_2602 PF01975 Survival protein SurE VS_2603 PF01142 tRNA pseudouridine synthase D (TruD) VS_2604 PF02542 YgbB family VS_2605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VS_2606 PF04977 Septum formation initiator VS_2607 PF00113 Enolase, C-terminal TIM barrel domain VS_2607 PF03952 Enolase, N-terminal domain VS_2609 PF00117 Glutamine amidotransferase class-I VS_2609 PF06418 CTP synthase N-terminus VS_2610 PF03819 MazG nucleotide pyrophosphohydrolase domain VS_2611 PF02824 TGS domain VS_2611 PF04607 Region found in RelA / SpoT proteins VS_2611 PF13291 ACT domain VS_2611 PF13328 HD domain VS_2612 PF01938 TRAM domain VS_2612 PF05958 tRNA (Uracil-5-)-methyltransferase VS_2614 PF00072 Response regulator receiver domain VS_2614 PF00512 His Kinase A (phospho-acceptor) domain VS_2614 PF01627 Hpt domain VS_2614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2614 PF09984 VS_2614 VS_2615 PF01648 4'-phosphopantetheinyl transferase superfamily VS_2616 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VS_2617 PF02565 Recombination protein O C terminal VS_2617 PF11967 Recombination protein O N terminal VS_2618 PF01926 50S ribosome-binding GTPase VS_2618 PF07650 KH domain VS_2619 PF00035 Double-stranded RNA binding motif VS_2619 PF14622 Ribonuclease-III-like VS_2620 PF00717 Peptidase S24-like VS_2620 PF10502 Signal peptidase, peptidase S26 VS_2621 PF00009 Elongation factor Tu GTP binding domain VS_2621 PF00679 Elongation factor G C-terminus VS_2621 PF03144 Elongation factor Tu domain 2 VS_2621 PF06421 GTP-binding protein LepA C-terminus VS_2622 PF04246 VS_2622 VS_2623 PF03888 MucB/RseB family VS_2623 PF17188 VS_2623 VS_2624 PF03872 Anti sigma-E protein RseA, N-terminal domain VS_2624 PF03873 Anti sigma-E protein RseA, C-terminal domain VS_2625 PF04542 Sigma-70 region 2 VS_2625 PF08281 Sigma-70, region 4 VS_2627 PF00890 FAD binding domain VS_2627 PF02910 Fumarate reductase flavoprotein C-term VS_2629 PF03937 Flavinator of succinate dehydrogenase VS_2630 PF01571 Aminomethyltransferase folate-binding domain VS_2631 PF04073 Aminoacyl-tRNA editing domain VS_2632 PF06526 Protein of unknown function (DUF1107) VS_2633 PF01494 FAD binding domain VS_2634 PF01494 FAD binding domain VS_2635 PF03695 Uncharacterised protein family (UPF0149) VS_2636 PF05164 Cell division protein ZapA VS_2638 PF01812 5-formyltetrahydrofolate cyclo-ligase family VS_2639 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VS_2640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_2640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_2641 PF04402 Protein of unknown function (DUF541) VS_2642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2642 PF03466 LysR substrate binding domain VS_2643 PF01810 VS_2643 VS_2644 PF00924 Mechanosensitive ion channel VS_2644 PF05552 Conserved TM helix VS_2645 PF01116 Fructose-bisphosphate aldolase class-II VS_2646 PF00162 Phosphoglycerate kinase VS_2648 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_2648 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_2649 PF00367 phosphotransferase system, EIIB VS_2649 PF02378 Phosphotransferase system, EIIC VS_2650 PF13416 Bacterial extracellular solute-binding protein VS_2651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2652 PF00072 Response regulator receiver domain VS_2652 PF00486 Transcriptional regulatory protein, C terminal VS_2654 PF00456 Transketolase, thiamine diphosphate binding domain VS_2654 PF02779 Transketolase, pyrimidine binding domain VS_2654 PF02780 Transketolase, C-terminal domain VS_2655 PF00438 S-adenosylmethionine synthetase, N-terminal domain VS_2655 PF02772 S-adenosylmethionine synthetase, central domain VS_2655 PF02773 S-adenosylmethionine synthetase, C-terminal domain VS_2656 PF00005 ABC transporter VS_2657 PF01497 Periplasmic binding protein VS_2658 PF01032 FecCD transport family VS_2659 PF00300 Histidine phosphatase superfamily (branch 1) VS_2661 PF01888 CbiD VS_2662 PF02570 Precorrin-8X methylmutase VS_2663 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2663 PF02390 Putative methyltransferase VS_2664 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2665 PF01890 Cobalamin synthesis G C-terminus VS_2665 PF11760 Cobalamin synthesis G N-terminal VS_2665 PF11761 VS_2665 VS_2666 PF06180 Cobalt chelatase (CbiK) VS_2667 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2668 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_2669 PF03186 VS_2669 VS_2670 PF00155 Aminotransferase class I and II VS_2671 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_2671 PF07685 CobB/CobQ-like glutamine amidotransferase domain VS_2672 PF09955 VS_2672 VS_2673 PF10263 VS_2673 VS_2673 PF17283 VS_2673 VS_2674 PF04231 Endonuclease I VS_2677 PF04452 RNA methyltransferase VS_2678 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VS_2678 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VS_2679 PF02622 Uncharacterized ACR, COG1678 VS_2680 PF03652 Uncharacterised protein family (UPF0081) VS_2681 PF00437 Type II/IV secretion system protein VS_2682 PF00437 Type II/IV secretion system protein VS_2683 PF01168 Alanine racemase, N-terminal domain VS_2684 PF03807 NADP oxidoreductase coenzyme F420-dependent VS_2684 PF14748 Pyrroline-5-carboxylate reductase dimerisation VS_2685 PF02325 VS_2685 VS_2686 PF02594 Uncharacterised ACR, YggU family COG1872 VS_2687 PF14467 Domain of unknown function (DUF4426) VS_2688 PF01725 Ham1 family VS_2689 PF04055 Radical SAM superfamily VS_2689 PF06969 HemN C-terminal domain VS_2690 PF04960 Glutaminase VS_2691 PF02390 Putative methyltransferase VS_2692 PF00633 Helix-hairpin-helix motif VS_2692 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_2692 PF14815 NUDIX domain VS_2693 PF04362 Bacterial Fe(2+) trafficking VS_2694 PF01464 Transglycosylase SLT domain VS_2694 PF11873 Domain of unknown function (DUF3393) VS_2703 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_2703 PF17200 VS_2703 VS_2709 PF09622 VS_2709 VS_2723 PF01966 HD domain VS_2723 PF11871 VS_2723 VS_2724 PF06983 3-demethylubiquinone-9 3-methyltransferase VS_2726 PF06271 VS_2726 VS_2727 PF03739 VS_2727 VS_2728 PF03739 VS_2728 VS_2729 PF02789 Cytosol aminopeptidase family, N-terminal domain VS_2730 PF00883 Cytosol aminopeptidase family, catalytic domain VS_2731 PF04364 DNA polymerase III chi subunit, HolC VS_2732 PF00133 tRNA synthetases class I (I, L, M and V) VS_2732 PF08264 Anticodon-binding domain of tRNA VS_2732 PF10458 Valyl tRNA synthetase tRNA binding arm VS_2734 PF09834 VS_2734 VS_2735 PF00583 Acetyltransferase (GNAT) family VS_2735 PF12802 MarR family VS_2737 PF06877 Regulator of ribonuclease activity B VS_2738 PF02274 Amidinotransferase VS_2739 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2739 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2741 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_2741 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_2742 PF01042 Endoribonuclease L-PSP VS_2743 PF01553 Acyltransferase VS_2744 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VS_2745 PF01722 BolA-like protein VS_2746 PF13466 STAS domain VS_2747 PF05494 Toluene tolerance, Ttg2 VS_2748 PF02470 VS_2748 VS_2749 PF02405 VS_2749 VS_2750 PF00005 ABC transporter VS_2751 PF01699 Sodium/calcium exchanger protein VS_2752 PF00571 CBS domain VS_2752 PF01380 SIS domain VS_2753 PF08282 haloacid dehalogenase-like hydrolase VS_2754 PF06835 Lipopolysaccharide-assembly, LptC-related VS_2755 PF03968 OstA-like protein VS_2756 PF00005 ABC transporter VS_2756 PF12399 Branched-chain amino acid ATP-binding cassette transporter VS_2757 PF00309 VS_2757 VS_2757 PF04552 Sigma-54, DNA binding domain VS_2757 PF04963 Sigma-54 factor, core binding domain VS_2758 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_2759 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_2760 PF03668 VS_2760 VS_2761 PF00381 PTS HPr component phosphorylation site VS_2762 PF00571 CBS domain VS_2762 PF01769 Divalent cation transporter VS_2762 PF03448 MgtE intracellular N domain VS_2763 PF01523 Putative modulator of DNA gyrase VS_2764 PF04751 Protein of unknown function (DUF615) VS_2765 PF00005 ABC transporter VS_2766 PF00528 Binding-protein-dependent transport system inner membrane component VS_2767 PF13343 Bacterial extracellular solute-binding protein VS_2769 PF02441 Flavoprotein VS_2770 PF01225 Mur ligase family, catalytic domain VS_2770 PF02875 Mur ligase family, glutamate ligase domain VS_2770 PF08245 Mur ligase middle domain VS_2771 PF00316 Fructose-1-6-bisphosphatase VS_2772 PF10973 VS_2772 VS_2773 PF06094 AIG2-like family VS_2774 PF04357 VS_2774 VS_2775 PF01103 Surface antigen VS_2775 PF17243 VS_2775 VS_2776 PF01625 Peptide methionine sulfoxide reductase VS_2779 PF09695 VS_2779 VS_2780 PF10795 VS_2780 VS_2781 PF10986 VS_2781 VS_2782 PF00005 ABC transporter VS_2783 PF02687 VS_2783 VS_2783 PF12704 MacB-like periplasmic core domain VS_2784 PF11736 Protein of unknown function (DUF3299) VS_2785 PF10987 VS_2785 VS_2786 PF01583 Adenylylsulphate kinase VS_2787 PF02080 TrkA-C domain VS_2787 PF03600 Citrate transporter VS_2788 PF00009 Elongation factor Tu GTP binding domain VS_2789 PF01507 Phosphoadenosine phosphosulfate reductase family VS_2790 PF00149 Calcineurin-like phosphoesterase VS_2790 PF02872 5'-nucleotidase, C-terminal domain VS_2791 PF09335 VS_2791 VS_2794 PF05742 VS_2794 VS_2795 PF04945 YHS domain VS_2797 PF01553 Acyltransferase VS_2797 PF13444 Acetyltransferase (GNAT) domain VS_2798 PF00027 Cyclic nucleotide-binding domain VS_2799 PF13673 Acetyltransferase (GNAT) domain VS_2800 PF00892 EamA-like transporter family VS_2801 PF04225 Opacity-associated protein A LysM-like domain VS_2801 PF08525 VS_2801 VS_2803 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2803 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_2804 PF11075 VS_2804 VS_2806 PF01196 Ribosomal protein L17 VS_2807 PF01000 RNA polymerase Rpb3/RpoA insert domain VS_2807 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VS_2807 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VS_2808 PF00163 Ribosomal protein S4/S9 N-terminal domain VS_2808 PF01479 S4 domain VS_2809 PF00411 Ribosomal protein S11 VS_2810 PF00416 Ribosomal protein S13/S18 VS_2810.1 PF00444 Ribosomal protein L36 VS_2811 PF00344 SecY translocase VS_2812 PF00828 Ribosomal protein L18e/L15 VS_2813 PF00327 Ribosomal protein L30p/L7e VS_2814 PF00333 Ribosomal protein S5, N-terminal domain VS_2814 PF03719 Ribosomal protein S5, C-terminal domain VS_2815 PF00861 Ribosomal L18p/L5e family VS_2816 PF00347 Ribosomal protein L6 VS_2817 PF00410 Ribosomal protein S8 VS_2818 PF00253 Ribosomal protein S14p/S29e VS_2819 PF00281 Ribosomal protein L5 VS_2819 PF00673 ribosomal L5P family C-terminus VS_2820 PF00467 KOW motif VS_2820 PF17136 VS_2820 VS_2821 PF00238 Ribosomal protein L14p/L23e VS_2822 PF00366 Ribosomal protein S17 VS_2823 PF00831 Ribosomal L29 protein VS_2824 PF00252 Ribosomal protein L16p/L10e VS_2825 PF00189 Ribosomal protein S3, C-terminal domain VS_2825 PF07650 KH domain VS_2826 PF00237 Ribosomal protein L22p/L17e VS_2828 PF00203 Ribosomal protein S19 VS_2829 PF00181 Ribosomal Proteins L2, RNA binding domain VS_2829 PF03947 Ribosomal Proteins L2, C-terminal domain VS_2830 PF00276 Ribosomal protein L23 VS_2831 PF00573 Ribosomal protein L4/L1 family VS_2832 PF00297 Ribosomal protein L3 VS_2833 PF00338 Ribosomal protein S10p/S20e VS_2834 PF00009 Elongation factor Tu GTP binding domain VS_2834 PF03143 Elongation factor Tu C-terminal domain VS_2834 PF03144 Elongation factor Tu domain 2 VS_2835 PF00009 Elongation factor Tu GTP binding domain VS_2835 PF00679 Elongation factor G C-terminus VS_2835 PF03144 Elongation factor Tu domain 2 VS_2835 PF03764 Elongation factor G, domain IV VS_2835 PF14492 Elongation Factor G, domain II VS_2836 PF00177 Ribosomal protein S7p/S5e VS_2837 PF00164 Ribosomal protein S12/S23 VS_2838 PF04077 DsrH like protein VS_2839 PF02635 DsrE/DsrF-like family VS_2840 PF02635 DsrE/DsrF-like family VS_2841 PF08348 VS_2841 VS_2841 PF13309 VS_2841 VS_2842 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2842 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_2843 PF00400 WD domain, G-beta repeat VS_2844 PF04102 SlyX VS_2845 PF01112 Asparaginase VS_2846 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_2847 PF09526 VS_2847 VS_2848 PF00999 Sodium/hydrogen exchanger family VS_2848 PF02254 TrkA-N domain VS_2849 PF02525 Flavodoxin-like fold VS_2850 PF00005 ABC transporter VS_2850 PF12848 ABC transporter VS_2851 PF09523 VS_2851 VS_2852 PF00561 alpha/beta hydrolase fold VS_2853 PF06794 Uncharacterised protein family (UPF0270) VS_2854 PF00485 Phosphoribulokinase / Uridine kinase family VS_2855 PF00027 Cyclic nucleotide-binding domain VS_2855 PF00325 Bacterial regulatory proteins, crp family VS_2857 PF00665 Integrase core domain VS_2858 PF07063 Domain of unknown function (DUF1338) VS_2859 PF00171 Aldehyde dehydrogenase family VS_2860 PF04958 Arginine N-succinyltransferase beta subunit VS_2861 PF00202 Aminotransferase class-III VS_2862 PF00117 Glutamine amidotransferase class-I VS_2863 PF00563 EAL domain VS_2863 PF00990 GGDEF domain VS_2863 PF08269 Cache domain VS_2864 PF00932 Lamin Tail Domain VS_2866 PF00579 tRNA synthetases class I (W and Y) VS_2867 PF13419 Haloacid dehalogenase-like hydrolase VS_2868 PF00834 Ribulose-phosphate 3 epimerase family VS_2869 PF02086 D12 class N6 adenine-specific DNA methyltransferase VS_2870 PF13401 AAA domain VS_2871 PF01761 3-dehydroquinate synthase VS_2872 PF01202 Shikimate kinase VS_2873 PF00263 VS_2873 VS_2873 PF03958 Bacterial type II/III secretion system short domain VS_2874 PF04351 Pilus assembly protein, PilP VS_2875 PF04350 Pilus assembly protein, PilO VS_2876 PF05137 VS_2876 VS_2877 PF11104 Type IV pilus assembly protein PilM; VS_2878 PF00905 Penicillin binding protein transpeptidase domain VS_2878 PF00912 Transglycosylase VS_2878 PF17092 VS_2878 VS_2879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_2879 PF03466 LysR substrate binding domain VS_2880 PF00462 Glutaredoxin VS_2880 PF08534 Redoxin VS_2881 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_2881 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_2882 PF01042 Endoribonuclease L-PSP VS_2884 PF12292 VS_2884 VS_2885 PF00206 Lyase VS_2885 PF00583 Acetyltransferase (GNAT) family VS_2885 PF14698 Argininosuccinate lyase C-terminal VS_2886 PF00764 Arginosuccinate synthase VS_2887 PF00696 Amino acid kinase family VS_2888 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_2888 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_2889 PF01546 Peptidase family M20/M25/M40 VS_2889 PF07687 Peptidase dimerisation domain VS_2890 PF00311 Phosphoenolpyruvate carboxylase VS_2891 PF03551 Transcriptional regulator PadR-like family VS_2891 PF10400 Virulence activator alpha C-term VS_2892 PF02219 Methylenetetrahydrofolate reductase VS_2893 PF00696 Amino acid kinase family VS_2893 PF00742 Homoserine dehydrogenase VS_2893 PF03447 Homoserine dehydrogenase, NAD binding domain VS_2894 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_2895 PF01340 Met Apo-repressor, MetJ VS_2896 PF00390 Malic enzyme, N-terminal domain VS_2896 PF03949 Malic enzyme, NAD binding domain VS_2897 PF01197 Ribosomal protein L31 VS_2898 PF00270 DEAD/DEAH box helicase VS_2898 PF00271 Helicase conserved C-terminal domain VS_2899 PF00356 Bacterial regulatory proteins, lacI family VS_2899 PF13377 Periplasmic binding protein-like domain VS_2900 PF05036 Sporulation related domain VS_2901 PF00227 Proteasome subunit VS_2902 PF00004 ATPase family associated with various cellular activities (AAA) VS_2902 PF07724 AAA domain (Cdc48 subfamily) VS_2902 PF10431 C-terminal, D2-small domain, of ClpB protein VS_2903 PF01040 UbiA prenyltransferase family VS_2904 PF03737 Demethylmenaquinone methyltransferase VS_2905 PF06005 Protein of unknown function (DUF904) VS_2906 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VS_2907 PF13412 Winged helix-turn-helix DNA-binding VS_2908 PF11333 VS_2908 VS_2909 PF05656 VS_2909 VS_2910 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VS_2912 PF00121 Triosephosphate isomerase VS_2913 PF00365 Phosphofructokinase VS_2914 PF01545 Cation efflux family VS_2914 PF16916 VS_2914 VS_2915 PF07813 LTXXQ motif family protein VS_2916 PF00072 Response regulator receiver domain VS_2916 PF00486 Transcriptional regulatory protein, C terminal VS_2917 PF00512 His Kinase A (phospho-acceptor) domain VS_2917 PF00672 HAMP domain VS_2917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2917 PF16527 VS_2917 VS_2918 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_2918 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_2919 PF00588 SpoU rRNA Methylase family VS_2920 PF04186 VS_2920 VS_2921 PF00206 Lyase VS_2921 PF10415 Fumarase C C-terminus VS_2922 PF03605 VS_2922 VS_2923 PF03606 VS_2923 VS_2924 PF02274 Amidinotransferase VS_2925 PF00696 Amino acid kinase family VS_2926 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2926 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2927 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_2927 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_2928 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_2928 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_2929 PF01316 Arginine repressor, DNA binding domain VS_2929 PF02863 Arginine repressor, C-terminal domain VS_2930 PF02683 VS_2930 VS_2930 PF11412 Disulphide bond corrector protein DsbC VS_2930 PF13899 Thioredoxin-like VS_2931 PF00072 Response regulator receiver domain VS_2931 PF00196 Bacterial regulatory proteins, luxR family VS_2932 PF00999 Sodium/hydrogen exchanger family VS_2932 PF02080 TrkA-C domain VS_2932 PF03471 Transporter associated domain VS_2934 PF13937 VS_2934 VS_2935 PF00474 Sodium:solute symporter family VS_2937 PF00206 Lyase VS_2937 PF10415 Fumarase C C-terminus VS_2938 PF00072 Response regulator receiver domain VS_2938 PF00512 His Kinase A (phospho-acceptor) domain VS_2938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_2938 PF12860 VS_2938 VS_2939 PF12832 MFS_1 like family VS_2940 PF00027 Cyclic nucleotide-binding domain VS_2940 PF03445 VS_2940 VS_2940 PF10335 VS_2940 VS_2941 PF00929 Exonuclease VS_2942 PF00501 AMP-binding enzyme VS_2942 PF13193 AMP-binding enzyme C-terminal domain VS_2942 PF16177 VS_2942 VS_2943 PF01220 Dehydroquinase class II VS_2944 PF00364 Biotin-requiring enzyme VS_2945 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VS_2945 PF02785 Biotin carboxylase C-terminal domain VS_2945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_2946 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VS_2947 PF01207 Dihydrouridine synthase (Dus) VS_2948 PF02954 Bacterial regulatory protein, Fis family VS_2949 PF00990 GGDEF domain VS_2950 PF00376 MerR family regulatory protein VS_2950 PF09278 MerR, DNA binding VS_2951 PF01808 AICARFT/IMPCHase bienzyme VS_2951 PF02142 MGS-like domain VS_2952 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VS_2952 PF02843 Phosphoribosylglycinamide synthetase, C domain VS_2952 PF02844 Phosphoribosylglycinamide synthetase, N domain VS_2953 PF07356 VS_2953 VS_2954 PF00216 Bacterial DNA-binding protein VS_2955 PF00571 CBS domain VS_2955 PF01595 VS_2955 VS_2956 PF04222 Protein of unknown function (DUF416) VS_2957 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_2958 PF03167 Uracil DNA glycosylase superfamily VS_2959 PF01208 Uroporphyrinogen decarboxylase (URO-D) VS_2960 PF00293 NUDIX domain VS_2960 PF09297 NADH pyrophosphatase zinc ribbon domain VS_2961 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VS_2962 PF00623 RNA polymerase Rpb1, domain 2 VS_2962 PF04983 RNA polymerase Rpb1, domain 3 VS_2962 PF04997 RNA polymerase Rpb1, domain 1 VS_2962 PF04998 RNA polymerase Rpb1, domain 5 VS_2962 PF05000 RNA polymerase Rpb1, domain 4 VS_2963 PF00562 RNA polymerase Rpb2, domain 6 VS_2963 PF04560 RNA polymerase Rpb2, domain 7 VS_2963 PF04561 RNA polymerase Rpb2, domain 2 VS_2963 PF04563 RNA polymerase beta subunit VS_2963 PF04565 RNA polymerase Rpb2, domain 3 VS_2963 PF10385 RNA polymerase beta subunit external 1 domain VS_2964 PF00542 Ribosomal protein L7/L12 C-terminal domain VS_2964 PF16320 VS_2964 VS_2965 PF00466 Ribosomal protein L10 VS_2967 PF00687 Ribosomal protein L1p/L10e family VS_2968 PF00298 Ribosomal protein L11, RNA binding domain VS_2968 PF03946 Ribosomal protein L11, N-terminal domain VS_2970 PF00467 KOW motif VS_2970 PF02357 Transcription termination factor nusG VS_2972 PF00009 Elongation factor Tu GTP binding domain VS_2972 PF03143 Elongation factor Tu C-terminal domain VS_2972 PF03144 Elongation factor Tu domain 2 VS_2978 PF00485 Phosphoribulokinase / Uridine kinase family VS_2979 PF02237 Biotin protein ligase C terminal domain VS_2979 PF03099 Biotin/lipoate A/B protein ligase family VS_2979 PF08279 HTH domain VS_2980 PF01565 FAD binding domain VS_2980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VS_2981 PF13508 Acetyltransferase (GNAT) domain VS_2982 PF13091 PLD-like domain VS_2983 PF13358 DDE superfamily endonuclease VS_2995 PF00076 RNA recognition motif VS_2996 PF01177 Asp/Glu/Hydantoin racemase VS_2997 PF01902 ATP-binding region VS_2998 PF00593 TonB dependent receptor VS_2998 PF07715 TonB-dependent Receptor Plug Domain VS_3000 PF05958 tRNA (Uracil-5-)-methyltransferase VS_3001 PF07226 VS_3001 VS_3002 PF00440 Bacterial regulatory proteins, tetR family VS_3003 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_3003 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_3004 PF01554 MatE VS_3005 PF04072 Leucine carboxyl methyltransferase VS_3006 PF00717 Peptidase S24-like VS_3006 PF01726 LexA DNA binding domain VS_3007 PF01219 Prokaryotic diacylglycerol kinase VS_3009 PF01553 Acyltransferase VS_3010 PF00665 Integrase core domain VS_3012 PF01040 UbiA prenyltransferase family VS_3013 PF04345 Chorismate lyase VS_3015 PF03748 VS_3015 VS_3016 PF01694 Rhomboid family VS_3016 PF12122 Protein of unknown function (DUF3582) VS_3017 PF00581 Rhodanese-like domain VS_3018 PF00140 Sigma-70 factor, region 1 VS_3018 PF04542 Sigma-70 region 2 VS_3018 PF04545 Sigma-70, region 4 VS_3020 PF00005 ABC transporter VS_3021 PF00448 SRP54-type protein, GTPase domain VS_3021 PF02881 SRP54-type protein, helical bundle domain VS_3023 PF03602 Conserved hypothetical protein 95 VS_3024 PF06611 VS_3024 VS_3025 PF01914 VS_3025 VS_3026 PF10678 VS_3026 VS_3027 PF07947 VS_3027 VS_3029 PF10694 Protein of unknown function (DUF2500) VS_3030 PF01757 VS_3030 VS_3031 PF07690 Major Facilitator Superfamily VS_3032 PF00782 Dual specificity phosphatase, catalytic domain VS_3033 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_3033 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_3034 PF01022 Bacterial regulatory protein, arsR family VS_3035 PF00563 EAL domain VS_3035 PF08668 HDOD domain VS_3036 PF01810 VS_3036 VS_3037 PF12146 Putative lysophospholipase VS_3038 PF08282 haloacid dehalogenase-like hydrolase VS_3039 PF01878 EVE domain VS_3041 PF03942 VS_3041 VS_3042 PF00563 EAL domain VS_3042 PF00990 GGDEF domain VS_3042 PF08495 VS_3042 VS_3042 PF10442 VS_3042 VS_3043 PF00563 EAL domain VS_3043 PF00990 GGDEF domain VS_3043 PF08495 VS_3043 VS_3043 PF10442 VS_3043 VS_3044 PF13419 Haloacid dehalogenase-like hydrolase VS_3045 PF00589 Phage integrase family VS_3045 PF02899 Phage integrase, N-terminal SAM-like domain VS_3046 PF04340 Protein of unknown function, DUF484 VS_3047 PF01678 Diaminopimelate epimerase VS_3048 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_3048 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_3049 PF13627 VS_3049 VS_3050 PF01491 Frataxin-like domain VS_3051 PF01295 VS_3051 VS_3051 PF12633 VS_3051 VS_3052 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VS_3052 PF03900 Porphobilinogen deaminase, C-terminal domain VS_3053 PF02602 Uroporphyrinogen-III synthase HemD VS_3054 PF04375 VS_3054 VS_3055 PF07219 VS_3055 VS_3067 PF00175 Oxidoreductase NAD-binding domain VS_3067 PF00970 Oxidoreductase FAD-binding domain VS_3068 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_3069 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VS_3071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3071 PF07497 Rho termination factor, RNA-binding domain VS_3071 PF07498 Rho termination factor, N-terminal domain VS_3072 PF00085 Thioredoxin VS_3073 PF00270 DEAD/DEAH box helicase VS_3073 PF00271 Helicase conserved C-terminal domain VS_3074 PF02541 Ppx/GppA phosphatase family VS_3075 PF02592 VS_3075 VS_3076 PF12305 VS_3076 VS_3077 PF00270 DEAD/DEAH box helicase VS_3077 PF00271 Helicase conserved C-terminal domain VS_3077 PF00570 HRDC domain VS_3077 PF09382 RQC domain VS_3077 PF16124 VS_3077 VS_3078 PF00892 EamA-like transporter family VS_3079 PF02311 AraC-like ligand binding domain VS_3079 PF12833 Helix-turn-helix domain VS_3080 PF01810 VS_3080 VS_3081 PF01019 Gamma-glutamyltranspeptidase VS_3083 PF08534 Redoxin VS_3084 PF00580 UvrD/REP helicase N-terminal domain VS_3084 PF13361 UvrD-like helicase C-terminal domain VS_3085 PF10048 VS_3085 VS_3086 PF05114 Protein of unknown function (DUF692) VS_3087 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) VS_3088 PF07681 VS_3088 VS_3090 PF07690 Major Facilitator Superfamily VS_3091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_3091 PF03466 LysR substrate binding domain VS_3092 PF00557 Metallopeptidase family M24 VS_3092 PF01321 Creatinase/Prolidase N-terminal domain VS_3092 PF16188 VS_3092 VS_3092 PF16189 VS_3092 VS_3093 PF04055 Radical SAM superfamily VS_3093 PF06968 Biotin and Thiamin Synthesis associated domain VS_3094 PF05690 Thiazole biosynthesis protein ThiG VS_3095 PF02597 ThiS family VS_3096 PF00899 ThiF family VS_3097 PF02581 Thiamine monophosphate synthase/TENI VS_3098 PF01964 ThiC family VS_3098 PF13667 ThiC-associated domain VS_3100 PF02537 VS_3100 VS_3101 PF00394 Multicopper oxidase VS_3101 PF07731 Multicopper oxidase VS_3101 PF07732 Multicopper oxidase VS_3115 PF00132 Bacterial transferase hexapeptide (six repeats) VS_3116 PF07369 Protein of unknown function (DUF1488) VS_3117 PF01488 Shikimate / quinate 5-dehydrogenase VS_3117 PF08501 Shikimate dehydrogenase substrate binding domain VS_3118 PF01218 Coproporphyrinogen III oxidase VS_3119 PF01300 Telomere recombination VS_3120 PF00731 AIR carboxylase VS_3121 PF02222 ATP-grasp domain VS_3122 PF01396 VS_3122 VS_3123 PF04361 VS_3123 VS_3124 PF02481 DNA recombination-mediator protein A VS_3125 PF01476 LysM domain VS_3126 PF01327 Polypeptide deformylase VS_3127 PF00551 Formyl transferase VS_3127 PF02911 Formyl transferase, C-terminal domain VS_3128 PF01029 NusB family VS_3128 PF01189 NOL1/NOP2/sun family VS_3129 PF02080 TrkA-C domain VS_3129 PF02254 TrkA-N domain VS_3131 PF02386 Cation transport protein VS_3132 PF11355 VS_3132 VS_3133 PF03006 VS_3133 VS_3134 PF07070 VS_3134 VS_3136 PF06288 Protein of unknown function (DUF1040) VS_3138 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VS_3138 PF12801 VS_3138 VS_3138 PF13746 4Fe-4S dicluster domain VS_3139 PF01636 Phosphotransferase enzyme family VS_3140 PF01323 DSBA-like thioredoxin domain VS_3141 PF11059 VS_3141 VS_3142 PF01078 Magnesium chelatase, subunit ChlI VS_3142 PF13335 VS_3142 VS_3142 PF13541 Subunit ChlI of Mg-chelatase VS_3143 PF00205 Thiamine pyrophosphate enzyme, central domain VS_3143 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_3143 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_3144 PF13710 ACT domain VS_3145 PF01063 Aminotransferase class IV VS_3146 PF00920 Dehydratase family VS_3147 PF00291 Pyridoxal-phosphate dependent enzyme VS_3147 PF00585 C-terminal regulatory domain of Threonine dehydratase VS_3148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_3148 PF03466 LysR substrate binding domain VS_3149 PF07690 Major Facilitator Superfamily VS_3150 PF00132 Bacterial transferase hexapeptide (six repeats) VS_3150 PF12804 MobA-like NTP transferase domain VS_3151 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VS_3151 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VS_3152 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3152 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_3153 PF00231 ATP synthase VS_3154 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_3154 PF00306 ATP synthase alpha/beta chain, C terminal domain VS_3154 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_3155 PF00213 ATP synthase delta (OSCP) subunit VS_3156 PF00430 ATP synthase B/B' CF(0) VS_3157 PF00137 ATP synthase subunit C VS_3158 PF00119 ATP synthase A chain VS_3159 PF03899 VS_3159 VS_3160 PF02195 ParB-like nuclease domain VS_3161 PF13614 AAA domain VS_3162 PF02527 rRNA small subunit methyltransferase G VS_3163 PF01134 Glucose inhibited division protein A VS_3163 PF13932 GidA associated domain 3 VS_II0001 PF13614 AAA domain VS_II0002 PF02195 ParB-like nuclease domain VS_II0003 PF05127 Helicase VS_II0003 PF08351 Domain of unknown function (DUF1726) VS_II0003 PF13718 GNAT acetyltransferase 2 VS_II0004 PF03961 VS_II0004 VS_II0005 PF00005 ABC transporter VS_II0005 PF00664 ABC transporter transmembrane region VS_II0006 PF00563 EAL domain VS_II0006 PF00990 GGDEF domain VS_II0006 PF16448 VS_II0006 VS_II0007 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP VS_II0008 PF02321 Outer membrane efflux protein VS_II0008 PF13437 HlyD family secretion protein VS_II0008 PF13533 Biotin-lipoyl like VS_II0009 PF00072 Response regulator receiver domain VS_II0009 PF02954 Bacterial regulatory protein, Fis family VS_II0009 PF14532 Sigma-54 interaction domain VS_II0010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0010 PF02743 Cache domain VS_II0011 PF01243 Pyridoxamine 5'-phosphate oxidase VS_II0011 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VS_II0012 PF00196 Bacterial regulatory proteins, luxR family VS_II0012 PF08448 PAS fold VS_II0014 PF03781 Sulfatase-modifying factor enzyme 1 VS_II0014 PF08308 VS_II0014 VS_II0016 PF08308 VS_II0016 VS_II0018 PF12833 Helix-turn-helix domain VS_II0019 PF00171 Aldehyde dehydrogenase family VS_II0019 PF01619 Proline dehydrogenase VS_II0019 PF14850 DNA-binding domain of Proline dehydrogenase VS_II0021 PF00474 Sodium:solute symporter family VS_II0024 PF01037 AsnC family VS_II0024 PF13412 Winged helix-turn-helix DNA-binding VS_II0026 PF00005 ABC transporter VS_II0026 PF00664 ABC transporter transmembrane region VS_II0027 PF02274 Amidinotransferase VS_II0029 PF12833 Helix-turn-helix domain VS_II0030 PF00583 Acetyltransferase (GNAT) family VS_II0031 PF00884 Sulfatase VS_II0031 PF08019 VS_II0031 VS_II0032 PF13505 Outer membrane protein beta-barrel domain VS_II0033 PF00857 Isochorismatase family VS_II0034 PF01380 SIS domain VS_II0034 PF01418 Helix-turn-helix domain, rpiR family VS_II0035 PF01168 Alanine racemase, N-terminal domain VS_II0035 PF14031 Putative serine dehydratase domain VS_II0036 PF07969 Amidohydrolase family VS_II0037 PF01042 Endoribonuclease L-PSP VS_II0038 PF00474 Sodium:solute symporter family VS_II0039 PF00294 pfkB family carbohydrate kinase VS_II0040 PF01081 KDPG and KHG aldolase VS_II0041 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_II0041 PF02838 Glycosyl hydrolase family 20, domain 2 VS_II0042 PF06291 VS_II0042 VS_II0043 PF00512 His Kinase A (phospho-acceptor) domain VS_II0043 PF00672 HAMP domain VS_II0043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0044 PF00072 Response regulator receiver domain VS_II0044 PF00486 Transcriptional regulatory protein, C terminal VS_II0045 PF00563 EAL domain VS_II0045 PF00990 GGDEF domain VS_II0045 PF11845 VS_II0045 VS_II0048 PF00291 Pyridoxal-phosphate dependent enzyme VS_II0049 PF01037 AsnC family VS_II0049 PF13412 Winged helix-turn-helix DNA-binding VS_II0051 PF01546 Peptidase family M20/M25/M40 VS_II0051 PF07687 Peptidase dimerisation domain VS_II0052 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0053 PF04290 VS_II0053 VS_II0054 PF06808 VS_II0054 VS_II0055 PF00557 Metallopeptidase family M24 VS_II0055 PF01321 Creatinase/Prolidase N-terminal domain VS_II0056 PF00440 Bacterial regulatory proteins, tetR family VS_II0056 PF13977 Bacterial transcriptional repressor VS_II0057 PF00171 Aldehyde dehydrogenase family VS_II0058 PF00732 GMC oxidoreductase VS_II0058 PF05199 GMC oxidoreductase VS_II0059 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_II0060 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0061 PF00005 ABC transporter VS_II0062 PF01047 MarR family VS_II0063 PF00805 Pentapeptide repeats (8 copies) VS_II0063 PF13599 Pentapeptide repeats (9 copies) VS_II0065 PF16691 VS_II0065 VS_II0066 PF00583 Acetyltransferase (GNAT) family VS_II0067 PF00202 Aminotransferase class-III VS_II0068 PF06339 VS_II0068 VS_II0069 PF00696 Amino acid kinase family VS_II0070 PF13419 Haloacid dehalogenase-like hydrolase VS_II0072 PF00132 Bacterial transferase hexapeptide (six repeats) VS_II0072 PF12464 Maltose acetyltransferase VS_II0072 PF14602 Hexapeptide repeat of succinyl-transferase VS_II0073 PF00962 Adenosine/AMP deaminase VS_II0074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0074 PF03466 LysR substrate binding domain VS_II0075 PF03199 Eukaryotic glutathione synthase VS_II0075 PF03917 Eukaryotic glutathione synthase, ATP binding domain VS_II0076 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0076 PF12793 VS_II0076 VS_II0078 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VS_II0079 PF02574 Homocysteine S-methyltransferase VS_II0084 PF06958 S-type Pyocin VS_II0086 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VS_II0087 PF05016 Plasmid stabilisation system protein VS_II0089 PF00106 short chain dehydrogenase VS_II0090 PF00665 Integrase core domain VS_II0092 PF00753 Metallo-beta-lactamase superfamily VS_II0092 PF14863 Alkyl sulfatase dimerisation VS_II0092 PF14864 Alkyl sulfatase C-terminal VS_II0093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0093 PF03466 LysR substrate binding domain VS_II0094 PF00892 EamA-like transporter family VS_II0095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0097 PF00232 Glycosyl hydrolase family 1 VS_II0098 PF00356 Bacterial regulatory proteins, lacI family VS_II0098 PF13377 Periplasmic binding protein-like domain VS_II0099 PF00132 Bacterial transferase hexapeptide (six repeats) VS_II0099 PF12464 Maltose acetyltransferase VS_II0099 PF14602 Hexapeptide repeat of succinyl-transferase VS_II0100 PF07690 Major Facilitator Superfamily VS_II0101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0101 PF03466 LysR substrate binding domain VS_II0102 PF03992 Antibiotic biosynthesis monooxygenase VS_II0105 PF01872 RibD C-terminal domain VS_II0106 PF00440 Bacterial regulatory proteins, tetR family VS_II0106 PF02909 Tetracyclin repressor, C-terminal all-alpha domain VS_II0107 PF13091 PLD-like domain VS_II0108 PF00881 Nitroreductase family VS_II0109 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II0110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0110 PF03466 LysR substrate binding domain VS_II0111 PF06742 Protein of unknown function (DUF1214) VS_II0111 PF06863 Protein of unknown function (DUF1254) VS_II0112 PF04325 Protein of unknown function (DUF465) VS_II0113 PF01266 FAD dependent oxidoreductase VS_II0113 PF16901 VS_II0113 VS_II0114 PF00455 VS_II0114 VS_II0114 PF08220 DeoR-like helix-turn-helix domain VS_II0115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VS_II0115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VS_II0116 PF00230 Major intrinsic protein VS_II0117 PF05232 VS_II0117 VS_II0118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0118 PF03466 LysR substrate binding domain VS_II0119 PF01758 Sodium Bile acid symporter family VS_II0120 PF01022 Bacterial regulatory protein, arsR family VS_II0121 PF08282 haloacid dehalogenase-like hydrolase VS_II0122 PF01323 DSBA-like thioredoxin domain VS_II0123 PF06224 VS_II0123 VS_II0124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0124 PF03466 LysR substrate binding domain VS_II0125 PF03992 Antibiotic biosynthesis monooxygenase VS_II0126 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VS_II0130 PF13419 Haloacid dehalogenase-like hydrolase VS_II0131 PF00834 Ribulose-phosphate 3 epimerase family VS_II0134 PF07690 Major Facilitator Superfamily VS_II0136 PF01261 Xylose isomerase-like TIM barrel VS_II0137 PF01614 Bacterial transcriptional regulator VS_II0137 PF09339 IclR helix-turn-helix domain VS_II0138 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_II0139 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VS_II0139 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VS_II0140 PF04074 Domain of unknown function (DUF386) VS_II0141 PF08282 haloacid dehalogenase-like hydrolase VS_II0142 PF00596 Class II Aldolase and Adducin N-terminal domain VS_II0143 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0144 PF06808 VS_II0144 VS_II0145 PF04290 VS_II0145 VS_II0146 PF02615 Malate/L-lactate dehydrogenase VS_II0147 PF02595 Glycerate kinase family VS_II0148 PF00199 Catalase VS_II0148 PF06628 Catalase-related immune-responsive VS_II0149 PF01734 Patatin-like phospholipase VS_II0150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_II0150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_II0151 PF09313 Domain of unknown function (DUF1971) VS_II0152 PF00175 Oxidoreductase NAD-binding domain VS_II0152 PF00970 Oxidoreductase FAD-binding domain VS_II0153 PF01553 Acyltransferase VS_II0155 PF12847 Methyltransferase domain VS_II0156 PF00990 GGDEF domain VS_II0157 PF00128 Alpha amylase, catalytic domain VS_II0157 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0158 PF02264 LamB porin VS_II0159 PF07148 VS_II0159 VS_II0160 PF00756 Putative esterase VS_II0161 PF06202 Amylo-alpha-1,6-glucosidase VS_II0162 PF13416 Bacterial extracellular solute-binding protein VS_II0163 PF00128 Alpha amylase, catalytic domain VS_II0163 PF16657 VS_II0163 VS_II0164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0164 PF03466 LysR substrate binding domain VS_II0166 PF05729 NACHT domain VS_II0166 PF13156 VS_II0166 VS_II0167 PF00128 Alpha amylase, catalytic domain VS_II0168 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0168 PF03714 Bacterial pullanase-associated domain VS_II0168 PF11852 Domain of unknown function (DUF3372) VS_II0169 PF06961 VS_II0169 VS_II0170 PF01810 VS_II0170 VS_II0171 PF01037 AsnC family VS_II0171 PF13412 Winged helix-turn-helix DNA-binding VS_II0172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0172 PF03466 LysR substrate binding domain VS_II0174 PF08238 Sel1 repeat VS_II0175 PF00375 Sodium:dicarboxylate symporter family VS_II0177 PF03193 Protein of unknown function, DUF258 VS_II0178 PF04314 Protein of unknown function (DUF461) VS_II0179 PF02630 SCO1/SenC VS_II0181 PF04018 VS_II0181 VS_II0183 PF00196 Bacterial regulatory proteins, luxR family VS_II0184 PF00343 Carbohydrate phosphorylase VS_II0185 PF02446 4-alpha-glucanotransferase VS_II0186 PF00128 Alpha amylase, catalytic domain VS_II0186 PF02806 Alpha amylase, C-terminal all-beta domain VS_II0186 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VS_II0187 PF02361 Cobalt transport protein VS_II0188 PF00005 ABC transporter VS_II0188 PF12558 VS_II0188 VS_II0189 PF07155 ECF-type riboflavin transporter, S component VS_II0190 PF13533 Biotin-lipoyl like VS_II0191 PF11742 VS_II0191 VS_II0192 PF00892 EamA-like transporter family VS_II0193 PF00990 GGDEF domain VS_II0197 PF01048 Phosphorylase superfamily VS_II0198 PF01476 LysM domain VS_II0198 PF03734 L,D-transpeptidase catalytic domain VS_II0199 PF04728 Lipoprotein leucine-zipper VS_II0200 PF00270 DEAD/DEAH box helicase VS_II0200 PF00271 Helicase conserved C-terminal domain VS_II0201 PF00657 GDSL-like Lipase/Acylhydrolase VS_II0202 PF00561 alpha/beta hydrolase fold VS_II0203 PF03280 Proteobacterial lipase chaperone protein VS_II0204 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0204 PF00672 HAMP domain VS_II0205 PF12849 PBP superfamily domain VS_II0206 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0207 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0208 PF00005 ABC transporter VS_II0209 PF00990 GGDEF domain VS_II0210 PF13584 VS_II0210 VS_II0211 PF00515 Tetratricopeptide repeat VS_II0211 PF13519 von Willebrand factor type A domain VS_II0212 PF00092 von Willebrand factor type A domain VS_II0213 PF14316 VS_II0213 VS_II0214 PF01882 VS_II0214 VS_II0215 PF07726 ATPase family associated with various cellular activities (AAA) VS_II0216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0216 PF00672 HAMP domain VS_II0219 PF00005 ABC transporter VS_II0219 PF08402 TOBE domain VS_II0220 PF13416 Bacterial extracellular solute-binding protein VS_II0221 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0221 PF14785 Maltose transport system permease protein MalF P2 domain VS_II0222 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0224 PF03061 Thioesterase superfamily VS_II0225 PF00892 EamA-like transporter family VS_II0226 PF12833 Helix-turn-helix domain VS_II0229 PF00753 Metallo-beta-lactamase superfamily VS_II0229 PF14863 Alkyl sulfatase dimerisation VS_II0230 PF07859 alpha/beta hydrolase fold VS_II0231 PF00924 Mechanosensitive ion channel VS_II0232 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0232 PF03466 LysR substrate binding domain VS_II0235 PF01914 VS_II0235 VS_II0236 PF01769 Divalent cation transporter VS_II0236 PF03448 MgtE intracellular N domain VS_II0238 PF09335 VS_II0238 VS_II0239 PF01699 Sodium/calcium exchanger protein VS_II0240 PF02355 Protein export membrane protein VS_II0240 PF07549 SecD/SecF GG Motif VS_II0241 PF02355 Protein export membrane protein VS_II0241 PF07549 SecD/SecF GG Motif VS_II0241 PF13721 SecD export protein N-terminal TM region VS_II0243 PF04231 Endonuclease I VS_II0244 PF07143 Hydroxyneurosporene synthase (CrtC) VS_II0244 PF17186 VS_II0244 VS_II0245 PF02687 VS_II0245 VS_II0245 PF12704 MacB-like periplasmic core domain VS_II0247 PF00005 ABC transporter VS_II0248 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein VS_II0249 PF00563 EAL domain VS_II0249 PF00672 HAMP domain VS_II0249 PF00990 GGDEF domain VS_II0250 PF08240 Alcohol dehydrogenase GroES-like domain VS_II0250 PF13602 Zinc-binding dehydrogenase VS_II0252 PF04055 Radical SAM superfamily VS_II0254 PF05721 Phytanoyl-CoA dioxygenase (PhyH) VS_II0257 PF06742 Protein of unknown function (DUF1214) VS_II0257 PF06863 Protein of unknown function (DUF1254) VS_II0259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0259 PF03466 LysR substrate binding domain VS_II0260 PF00072 Response regulator receiver domain VS_II0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0261 PF17327 VS_II0261 VS_II0262 PF00031 Cystatin domain VS_II0264 PF00463 Isocitrate lyase family VS_II0265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0265 PF03466 LysR substrate binding domain VS_II0266 PF01274 Malate synthase VS_II0267 PF00171 Aldehyde dehydrogenase family VS_II0269 PF02028 BCCT family transporter VS_II0270 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_II0271 PF00990 GGDEF domain VS_II0272 PF01979 Amidohydrolase family VS_II0273 PF01679 VS_II0273 VS_II0274 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_II0274 PF00175 Oxidoreductase NAD-binding domain VS_II0274 PF00970 Oxidoreductase FAD-binding domain VS_II0274 PF03473 MOSC domain VS_II0274 PF03476 MOSC N-terminal beta barrel domain VS_II0275 PF02540 NAD synthase VS_II0276 PF01467 Cytidylyltransferase VS_II0279 PF01553 Acyltransferase VS_II0281 PF07383 VS_II0281 VS_II0282 PF04175 Protein of unknown function (DUF406) VS_II0283 PF00440 Bacterial regulatory proteins, tetR family VS_II0284 PF00005 ABC transporter VS_II0285 PF01032 FecCD transport family VS_II0286 PF01497 Periplasmic binding protein VS_II0287 PF02472 Biopolymer transport protein ExbD/TolR VS_II0288 PF01618 VS_II0288 VS_II0289 PF03544 Gram-negative bacterial TonB protein C-terminal VS_II0290 PF04055 Radical SAM superfamily VS_II0291 PF06228 Haem utilisation ChuX/HutX VS_II0292 PF01243 Pyridoxamine 5'-phosphate oxidase VS_II0293 PF00072 Response regulator receiver domain VS_II0293 PF01584 CheW-like domain VS_II0294 PF13616 PPIC-type PPIASE domain VS_II0295 PF00128 Alpha amylase, catalytic domain VS_II0296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0296 PF00672 HAMP domain VS_II0296 PF02743 Cache domain VS_II0297 PF07670 Nucleoside recognition VS_II0298 PF06912 VS_II0298 VS_II0299 PF04828 Glutathione-dependent formaldehyde-activating enzyme VS_II0302 PF01551 Peptidase family M23 VS_II0302 PF04225 Opacity-associated protein A LysM-like domain VS_II0303 PF00563 EAL domain VS_II0303 PF00990 GGDEF domain VS_II0304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0304 PF03466 LysR substrate binding domain VS_II0305 PF07690 Major Facilitator Superfamily VS_II0308 PF00462 Glutaredoxin VS_II0309 PF00892 EamA-like transporter family VS_II0310 PF13609 Gram-negative porin VS_II0311 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_II0312 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II0313 PF03611 VS_II0313 VS_II0314 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II0316 PF01773 Na+ dependent nucleoside transporter N-terminus VS_II0316 PF07662 Na+ dependent nucleoside transporter C-terminus VS_II0316 PF07670 Nucleoside recognition VS_II0318 PF13649 Methyltransferase domain VS_II0319 PF12060 VS_II0319 VS_II0320 PF00990 GGDEF domain VS_II0320 PF03924 CHASE domain VS_II0321 PF00270 DEAD/DEAH box helicase VS_II0321 PF00271 Helicase conserved C-terminal domain VS_II0323 PF01381 Helix-turn-helix VS_II0323 PF06114 Domain of unknown function (DUF955) VS_II0323 PF12268 VS_II0323 VS_II0325 PF00990 GGDEF domain VS_II0326 PF00313 'Cold-shock' DNA-binding domain VS_II0327 PF07969 Amidohydrolase family VS_II0328 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VS_II0329 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VS_II0332 PF13533 Biotin-lipoyl like VS_II0334 PF12625 VS_II0334 VS_II0334 PF12833 Helix-turn-helix domain VS_II0335 PF03253 Urea transporter VS_II0336 PF12900 Pyridoxamine 5'-phosphate oxidase VS_II0337 PF00155 Aminotransferase class I and II VS_II0337 PF00392 Bacterial regulatory proteins, gntR family VS_II0338 PF13520 Amino acid permease VS_II0339 PF01037 AsnC family VS_II0339 PF13412 Winged helix-turn-helix DNA-binding VS_II0340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0340 PF03466 LysR substrate binding domain VS_II0341 PF01810 VS_II0341 VS_II0342 PF12146 Putative lysophospholipase VS_II0344 PF03063 Prismane/CO dehydrogenase family VS_II0345 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_II0345 PF00175 Oxidoreductase NAD-binding domain VS_II0345 PF00970 Oxidoreductase FAD-binding domain VS_II0346 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_II0346 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_II0348 PF00072 Response regulator receiver domain VS_II0348 PF00512 His Kinase A (phospho-acceptor) domain VS_II0348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0350 PF08291 Peptidase M15 VS_II0351 PF04363 VS_II0351 VS_II0353 PF04337 Protein of unknown function, DUF480 VS_II0354 PF01541 GIY-YIG catalytic domain VS_II0355 PF13407 Periplasmic binding protein domain VS_II0356 PF00072 Response regulator receiver domain VS_II0356 PF00512 His Kinase A (phospho-acceptor) domain VS_II0356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0356 PF09308 LuxQ, periplasmic VS_II0358 PF08888 HopJ type III effector protein VS_II0359 PF06945 VS_II0359 VS_II0359 PF14375 VS_II0359 VS_II0360 PF00012 Hsp70 protein VS_II0361 PF00267 Gram-negative porin VS_II0362 PF01557 Fumarylacetoacetate (FAA) hydrolase family VS_II0363 PF01810 VS_II0363 VS_II0364 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_II0364 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_II0364 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_II0364 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_II0365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VS_II0365 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VS_II0365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_II0366 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_II0367 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VS_II0368 PF00510 Cytochrome c oxidase subunit III VS_II0369 PF02104 VS_II0369 VS_II0371 PF02628 VS_II0371 VS_II0373 PF01040 UbiA prenyltransferase family VS_II0375 PF11769 VS_II0375 VS_II0376 PF12843 VS_II0376 VS_II0381 PF06296 VS_II0381 VS_II0382 PF15731 VS_II0382 VS_II0387 PF00793 DAHP synthetase I family VS_II0388 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_II0388 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_II0388 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_II0388 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_II0389 PF00483 Nucleotidyl transferase VS_II0389 PF01050 Mannose-6-phosphate isomerase VS_II0390 PF00924 Mechanosensitive ion channel VS_II0391 PF02080 TrkA-C domain VS_II0391 PF02254 TrkA-N domain VS_II0392 PF02386 Cation transport protein VS_II0393 PF01625 Peptide methionine sulfoxide reductase VS_II0393 PF01641 SelR domain VS_II0394 PF02566 OsmC-like protein VS_II0395 PF00691 OmpA family VS_II0395 PF01389 OmpA-like transmembrane domain VS_II0396 PF13419 Haloacid dehalogenase-like hydrolase VS_II0397 PF00202 Aminotransferase class-III VS_II0398 PF00266 Aminotransferase class-V VS_II0399 PF13343 Bacterial extracellular solute-binding protein VS_II0400 PF01266 FAD dependent oxidoreductase VS_II0401 PF00005 ABC transporter VS_II0402 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0403 PF00392 Bacterial regulatory proteins, gntR family VS_II0403 PF07702 UTRA domain VS_II0404 PF00892 EamA-like transporter family VS_II0405 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_II0406 PF04290 VS_II0406 VS_II0407 PF06808 VS_II0407 VS_II0408 PF01202 Shikimate kinase VS_II0409 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VS_II0409 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_II0410 PF03575 Peptidase family S51 VS_II0411 PF00356 Bacterial regulatory proteins, lacI family VS_II0411 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II0412 PF04954 Siderophore-interacting protein VS_II0412 PF08021 Siderophore-interacting FAD-binding domain VS_II0413 PF00854 POT family VS_II0414 PF03313 VS_II0414 VS_II0414 PF03315 Serine dehydratase beta chain VS_II0415 PF02698 DUF218 domain VS_II0416 PF03891 VS_II0416 VS_II0417 PF00293 NUDIX domain VS_II0418 PF16130 VS_II0418 VS_II0421 PF00005 ABC transporter VS_II0421 PF00664 ABC transporter transmembrane region VS_II0422 PF00005 ABC transporter VS_II0422 PF00664 ABC transporter transmembrane region VS_II0424 PF01551 Peptidase family M23 VS_II0424 PF04225 Opacity-associated protein A LysM-like domain VS_II0425 PF01906 Putative heavy-metal-binding VS_II0426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0426 PF03466 LysR substrate binding domain VS_II0427 PF00892 EamA-like transporter family VS_II0428 PF13487 HD domain VS_II0430 PF07361 Cytochrome b562 VS_II0432 PF03929 VS_II0432 VS_II0433 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0434 PF03466 LysR substrate binding domain VS_II0435 PF07690 Major Facilitator Superfamily VS_II0436 PF00155 Aminotransferase class I and II VS_II0437 PF00107 Zinc-binding dehydrogenase VS_II0437 PF08240 Alcohol dehydrogenase GroES-like domain VS_II0438 PF05684 VS_II0438 VS_II0440 PF00999 Sodium/hydrogen exchanger family VS_II0440 PF02254 TrkA-N domain VS_II0441 PF02525 Flavodoxin-like fold VS_II0442 PF01212 Beta-eliminating lyase VS_II0443 PF03733 VS_II0443 VS_II0445 PF00465 Iron-containing alcohol dehydrogenase VS_II0447 PF13419 Haloacid dehalogenase-like hydrolase VS_II0448 PF00892 EamA-like transporter family VS_II0449 PF00990 GGDEF domain VS_II0449 PF13185 GAF domain VS_II0450 PF01545 Cation efflux family VS_II0452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0452 PF03466 LysR substrate binding domain VS_II0453 PF13489 Methyltransferase domain VS_II0454 PF11230 VS_II0454 VS_II0455 PF04055 Radical SAM superfamily VS_II0455 PF13353 4Fe-4S single cluster domain VS_II0456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0456 PF03466 LysR substrate binding domain VS_II0457 PF00368 Hydroxymethylglutaryl-coenzyme A reductase VS_II0460 PF12805 VS_II0460 VS_II0460 PF13515 VS_II0460 VS_II0461 PF00580 UvrD/REP helicase N-terminal domain VS_II0461 PF12462 VS_II0461 VS_II0461 PF13361 UvrD-like helicase C-terminal domain VS_II0462 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0463 PF00456 Transketolase, thiamine diphosphate binding domain VS_II0463 PF02779 Transketolase, pyrimidine binding domain VS_II0463 PF02780 Transketolase, C-terminal domain VS_II0464 PF00923 Transaldolase VS_II0465 PF04198 Putative sugar-binding domain VS_II0466 PF05547 VS_II0466 VS_II0467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0468 PF01478 Type IV leader peptidase family VS_II0469 PF04964 VS_II0469 VS_II0471 PF00263 VS_II0471 VS_II0471 PF13629 VS_II0471 VS_II0473 PF13614 AAA domain VS_II0474 PF00437 Type II/IV secretion system protein VS_II0475 PF00482 Type II secretion system (T2SS), protein F VS_II0476 PF00482 Type II secretion system (T2SS), protein F VS_II0478 PF07811 VS_II0478 VS_II0479 PF16964 VS_II0479 VS_II0480 PF00092 von Willebrand factor type A domain VS_II0481 PF00691 OmpA family VS_II0482 PF00563 EAL domain VS_II0482 PF00990 GGDEF domain VS_II0483 PF00581 Rhodanese-like domain VS_II0488 PF16130 VS_II0488 VS_II0489 PF00899 ThiF family VS_II0490 PF00994 Probable molybdopterin binding domain VS_II0490 PF03453 MoeA N-terminal region (domain I and II) VS_II0490 PF03454 MoeA C-terminal region (domain IV) VS_II0491 PF01227 GTP cyclohydrolase I VS_II0492 PF03577 VS_II0492 VS_II0494 PF07152 YaeQ protein VS_II0495 PF00313 'Cold-shock' DNA-binding domain VS_II0496 PF07995 Glucose / Sorbosone dehydrogenase VS_II0497 PF07690 Major Facilitator Superfamily VS_II0498 PF00005 ABC transporter VS_II0500 PF12833 Helix-turn-helix domain VS_II0500 PF14526 Integron-associated effector binding protein VS_II0501 PF00593 TonB dependent receptor VS_II0501 PF07715 TonB-dependent Receptor Plug Domain VS_II0502 PF01497 Periplasmic binding protein VS_II0503 PF01032 FecCD transport family VS_II0504 PF00378 Enoyl-CoA hydratase/isomerase family VS_II0505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_II0507 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II0508 PF00132 Bacterial transferase hexapeptide (six repeats) VS_II0509 PF00664 ABC transporter transmembrane region VS_II0510 PF00005 ABC transporter VS_II0510 PF00664 ABC transporter transmembrane region VS_II0511 PF13437 HlyD family secretion protein VS_II0511 PF13533 Biotin-lipoyl like VS_II0514 PF02321 Outer membrane efflux protein VS_II0515 PF11604 Copper binding periplasmic protein CusF VS_II0515 PF16576 VS_II0515 VS_II0516 PF00873 AcrB/AcrD/AcrF family VS_II0523 PF06738 VS_II0523 VS_II0523 PF12821 VS_II0523 VS_II0524 PF03831 PhnA protein VS_II0524 PF08274 PhnA Zinc-Ribbon VS_II0525 PF13508 Acetyltransferase (GNAT) domain VS_II0526 PF00583 Acetyltransferase (GNAT) family VS_II0527 PF13508 Acetyltransferase (GNAT) domain VS_II0528 PF12833 Helix-turn-helix domain VS_II0529 PF00593 TonB dependent receptor VS_II0529 PF07715 TonB-dependent Receptor Plug Domain VS_II0530 PF03747 ADP-ribosylglycohydrolase VS_II0531 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0532 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_II0533 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0534 PF00005 ABC transporter VS_II0535 PF00465 Iron-containing alcohol dehydrogenase VS_II0536 PF06719 VS_II0536 VS_II0536 PF12833 Helix-turn-helix domain VS_II0537 PF01042 Endoribonuclease L-PSP VS_II0540 PF00563 EAL domain VS_II0542 PF13302 Acetyltransferase (GNAT) domain VS_II0543 PF04224 VS_II0543 VS_II0544 PF01042 Endoribonuclease L-PSP VS_II0545 PF02028 BCCT family transporter VS_II0546 PF00704 Glycosyl hydrolases family 18 VS_II0546 PF06483 VS_II0546 VS_II0546 PF14600 Cellulose-binding domain VS_II0547 PF00990 GGDEF domain VS_II0547 PF08269 Cache domain VS_II0548 PF10688 VS_II0548 VS_II0549 PF13590 Domain of unknown function (DUF4136) VS_II0550 PF00768 D-alanyl-D-alanine carboxypeptidase VS_II0550 PF07943 Penicillin-binding protein 5, C-terminal domain VS_II0551 PF03692 VS_II0551 VS_II0552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0552 PF03466 LysR substrate binding domain VS_II0553 PF13564 VS_II0553 VS_II0554 PF00849 RNA pseudouridylate synthase VS_II0555 PF00043 Glutathione S-transferase, C-terminal domain VS_II0555 PF02798 Glutathione S-transferase, N-terminal domain VS_II0556 PF00107 Zinc-binding dehydrogenase VS_II0556 PF16884 VS_II0556 VS_II0557 PF00440 Bacterial regulatory proteins, tetR family VS_II0557 PF16925 VS_II0557 VS_II0558 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_II0558 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_II0559 PF13462 Thioredoxin VS_II0561 PF00691 OmpA family VS_II0562 PF13417 Glutathione S-transferase, N-terminal domain VS_II0563 PF00158 Sigma-54 interaction domain VS_II0563 PF01590 GAF domain VS_II0564 PF00042 Globin VS_II0564 PF00175 Oxidoreductase NAD-binding domain VS_II0564 PF00970 Oxidoreductase FAD-binding domain VS_II0565 PF03595 Voltage-dependent anion channel VS_II0566 PF00654 Voltage gated chloride channel VS_II0567 PF02492 CobW/HypB/UreG, nucleotide-binding domain VS_II0568 PF00270 DEAD/DEAH box helicase VS_II0568 PF00271 Helicase conserved C-terminal domain VS_II0569 PF01810 VS_II0569 VS_II0570 PF05787 Bacterial protein of unknown function (DUF839) VS_II0571 PF04320 VS_II0571 VS_II0573 PF06468 Spondin_N VS_II0574 PF06468 Spondin_N VS_II0575 PF00072 Response regulator receiver domain VS_II0575 PF00486 Transcriptional regulatory protein, C terminal VS_II0576 PF00512 His Kinase A (phospho-acceptor) domain VS_II0578 PF00892 EamA-like transporter family VS_II0580 PF01037 AsnC family VS_II0580 PF13412 Winged helix-turn-helix DNA-binding VS_II0584 PF13561 Enoyl-(Acyl carrier protein) reductase VS_II0585 PF00108 Thiolase, N-terminal domain VS_II0585 PF02803 Thiolase, C-terminal domain VS_II0586 PF09361 VS_II0586 VS_II0587 PF07167 VS_II0587 VS_II0588 PF11059 VS_II0588 VS_II0589 PF00512 His Kinase A (phospho-acceptor) domain VS_II0590 PF00072 Response regulator receiver domain VS_II0590 PF00486 Transcriptional regulatory protein, C terminal VS_II0591 PF00873 AcrB/AcrD/AcrF family VS_II0592 PF16576 VS_II0592 VS_II0593 PF02321 Outer membrane efflux protein VS_II0594 PF01966 HD domain VS_II0594 PF11871 VS_II0594 VS_II0595 PF09574 VS_II0595 VS_II0596 PF03264 NapC/NirT cytochrome c family, N-terminal region VS_II0597 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VS_II0598 PF00384 Molybdopterin oxidoreductase VS_II0598 PF01568 Molydopterin dinucleotide binding domain VS_II0598 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_II0599 PF03927 NapD protein VS_II0600 PF00037 4Fe-4S binding domain VS_II0600 PF13187 4Fe-4S dicluster domain VS_II0601 PF00672 HAMP domain VS_II0601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0601 PF07730 Histidine kinase VS_II0601 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VS_II0602 PF00072 Response regulator receiver domain VS_II0602 PF00196 Bacterial regulatory proteins, luxR family VS_II0603 PF03606 VS_II0603 VS_II0604 PF00392 Bacterial regulatory proteins, gntR family VS_II0604 PF07702 UTRA domain VS_II0605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II0605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II0606 PF01074 Glycosyl hydrolases family 38 N-terminal domain VS_II0606 PF07748 Glycosyl hydrolases family 38 C-terminal domain VS_II0606 PF09261 Alpha mannosidase, middle domain VS_II0607 PF02595 Glycerate kinase family VS_II0608 PF01238 Phosphomannose isomerase type I VS_II0609 PF03992 Antibiotic biosynthesis monooxygenase VS_II0610 PF00487 VS_II0610 VS_II0611 PF00583 Acetyltransferase (GNAT) family VS_II0612 PF01926 50S ribosome-binding GTPase VS_II0613 PF05488 PAAR motif VS_II0617 PF00171 Aldehyde dehydrogenase family VS_II0620 PF01965 DJ-1/PfpI family VS_II0620 PF12833 Helix-turn-helix domain VS_II0622 PF00486 Transcriptional regulatory protein, C terminal VS_II0623 PF00486 Transcriptional regulatory protein, C terminal VS_II0625 PF08534 Redoxin VS_II0626 PF08534 Redoxin VS_II0629 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0629 PF12793 VS_II0629 VS_II0630 PF01177 Asp/Glu/Hydantoin racemase VS_II0631 PF00196 Bacterial regulatory proteins, luxR family VS_II0633 PF00577 Outer membrane usher protein VS_II0634 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VS_II0638 PF01212 Beta-eliminating lyase VS_II0639 PF00293 NUDIX domain VS_II0640 PF07728 AAA domain (dynein-related subfamily) VS_II0640 PF12592 Protein of unknown function (DUF3763) VS_II0641 PF05762 VWA domain containing CoxE-like protein VS_II0647 PF01764 Lipase (class 3) VS_II0656 PF03150 Di-haem cytochrome c peroxidase VS_II0657 PF03150 Di-haem cytochrome c peroxidase VS_II0658 PF00355 Rieske [2Fe-2S] domain VS_II0658 PF10518 TAT (twin-arginine translocation) pathway signal sequence VS_II0659 PF00384 Molybdopterin oxidoreductase VS_II0659 PF01568 Molydopterin dinucleotide binding domain VS_II0660 PF05425 VS_II0660 VS_II0661 PF00127 Copper binding proteins, plastocyanin/azurin family VS_II0666 PF01548 VS_II0666 VS_II0668 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_II0668 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_II0668 PF04324 BFD-like [2Fe-2S] binding domain VS_II0668 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II0669 PF13806 Rieske-like [2Fe-2S] domain VS_II0670 PF01226 Formate/nitrite transporter VS_II0671 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_II0672 PF13778 VS_II0672 VS_II0673 PF01936 NYN domain VS_II0674 PF00072 Response regulator receiver domain VS_II0674 PF00486 Transcriptional regulatory protein, C terminal VS_II0675 PF00512 His Kinase A (phospho-acceptor) domain VS_II0675 PF00672 HAMP domain VS_II0675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0675 PF16750 VS_II0675 VS_II0676 PF00375 Sodium:dicarboxylate symporter family VS_II0677 PF00593 TonB dependent receptor VS_II0677 PF07715 TonB-dependent Receptor Plug Domain VS_II0678 PF11932 VS_II0678 VS_II0679 PF01618 VS_II0679 VS_II0680 PF01618 VS_II0680 VS_II0681 PF02472 Biopolymer transport protein ExbD/TolR VS_II0682 PF03544 Gram-negative bacterial TonB protein C-terminal VS_II0685 PF16357 VS_II0685 VS_II0686 PF10029 VS_II0686 VS_II0687 PF10670 VS_II0687 VS_II0690 PF01297 Periplasmic solute binding protein family VS_II0691 PF00005 ABC transporter VS_II0692 PF00950 VS_II0692 VS_II0694 PF11661 VS_II0694 VS_II0695 PF13302 Acetyltransferase (GNAT) domain VS_II0696 PF11756 VS_II0696 VS_II0697 PF01554 MatE VS_II0698 PF12833 Helix-turn-helix domain VS_II0699 PF00486 Transcriptional regulatory protein, C terminal VS_II0700 PF00486 Transcriptional regulatory protein, C terminal VS_II0701 PF07690 Major Facilitator Superfamily VS_II0703 PF00732 GMC oxidoreductase VS_II0703 PF05199 GMC oxidoreductase VS_II0704 PF00085 Thioredoxin VS_II0705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VS_II0705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VS_II0706 PF13692 Glycosyl transferases group 1 VS_II0707 PF04143 VS_II0707 VS_II0709 PF03372 Endonuclease/Exonuclease/phosphatase family VS_II0711 PF03477 ATP cone domain VS_II0711 PF13597 Anaerobic ribonucleoside-triphosphate reductase VS_II0712 PF13353 4Fe-4S single cluster domain VS_II0713 PF01554 MatE VS_II0714 PF02311 AraC-like ligand binding domain VS_II0714 PF12833 Helix-turn-helix domain VS_II0715 PF00155 Aminotransferase class I and II VS_II0716 PF05618 Putative ATP-dependant zinc protease VS_II0718 PF00005 ABC transporter VS_II0718 PF12848 ABC transporter VS_II0719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0719 PF00672 HAMP domain VS_II0719 PF02743 Cache domain VS_II0721 PF04076 Bacterial OB fold (BOF) protein VS_II0722 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_II0722 PF07685 CobB/CobQ-like glutamine amidotransferase domain VS_II0723 PF13531 Bacterial extracellular solute-binding protein VS_II0724 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0725 PF00005 ABC transporter VS_II0725 PF03459 TOBE domain VS_II0726 PF11269 Protein of unknown function (DUF3069) VS_II0727 PF00072 Response regulator receiver domain VS_II0727 PF00990 GGDEF domain VS_II0728 PF11557 VS_II0728 VS_II0729 PF00990 GGDEF domain VS_II0730 PF10719 VS_II0730 VS_II0731 PF10115 VS_II0731 VS_II0732 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VS_II0732 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VS_II0732 PF12769 Domain of unknown function (DUF3814) VS_II0733 PF02233 NAD(P) transhydrogenase beta subunit VS_II0735 PF00512 His Kinase A (phospho-acceptor) domain VS_II0735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0735 PF11884 Domain of unknown function (DUF3404) VS_II0736 PF00072 Response regulator receiver domain VS_II0736 PF00486 Transcriptional regulatory protein, C terminal VS_II0737 PF11060 VS_II0737 VS_II0738 PF13729 VS_II0738 VS_II0739 PF03701 VS_II0739 VS_II0741 PF00990 GGDEF domain VS_II0742 PF12375 VS_II0742 VS_II0743 PF01253 Translation initiation factor SUI1 VS_II0744 PF11782 VS_II0744 VS_II0745 PF00589 Phage integrase family VS_II0746 PF01820 D-ala D-ala ligase N-terminus VS_II0746 PF07478 D-ala D-ala ligase C-terminus VS_II0747 PF05036 Sporulation related domain VS_II0748 PF13302 Acetyltransferase (GNAT) domain VS_II0748 PF13380 CoA binding domain VS_II0748 PF13549 ATP-grasp domain VS_II0748 PF13607 Succinyl-CoA ligase like flavodoxin domain VS_II0749 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0749 PF03466 LysR substrate binding domain VS_II0751 PF00593 TonB dependent receptor VS_II0751 PF07715 TonB-dependent Receptor Plug Domain VS_II0752 PF16363 VS_II0752 VS_II0753 PF03746 LamB/YcsF family VS_II0754 PF02682 Allophanate hydrolase subunit 1 VS_II0755 PF02626 Allophanate hydrolase subunit 2 VS_II0756 PF01266 FAD dependent oxidoreductase VS_II0757 PF02687 VS_II0757 VS_II0758 PF00005 ABC transporter VS_II0759 PF13472 GDSL-like Lipase/Acylhydrolase family VS_II0760 PF07055 Enoyl reductase FAD binding domain VS_II0760 PF12241 Trans-2-enoyl-CoA reductase catalytic region VS_II0760 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VS_II0761 PF00563 EAL domain VS_II0761 PF00990 GGDEF domain VS_II0761 PF13185 GAF domain VS_II0762 PF09818 Predicted ATPase of the ABC class VS_II0763 PF00905 Penicillin binding protein transpeptidase domain VS_II0763 PF03717 Penicillin-binding Protein dimerisation domain VS_II0764 PF00226 DnaJ domain VS_II0764 PF12339 VS_II0764 VS_II0765 PF03171 2OG-Fe(II) oxygenase superfamily VS_II0765 PF14226 non-haem dioxygenase in morphine synthesis N-terminal VS_II0766 PF09997 VS_II0766 VS_II0767 PF00892 EamA-like transporter family VS_II0768 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0768 PF12793 VS_II0768 VS_II0769 PF11869 VS_II0769 VS_II0770 PF03061 Thioesterase superfamily VS_II0771 PF01435 Peptidase family M48 VS_II0773 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_II0774 PF12262 VS_II0774 VS_II0775 PF03831 PhnA protein VS_II0775 PF08274 PhnA Zinc-Ribbon VS_II0776 PF00270 DEAD/DEAH box helicase VS_II0776 PF00271 Helicase conserved C-terminal domain VS_II0777 PF06764 Protein of unknown function (DUF1223) VS_II0779 PF03741 VS_II0779 VS_II0782 PF02872 5'-nucleotidase, C-terminal domain VS_II0784 PF11398 Protein of unknown function (DUF2813) VS_II0785 PF06496 VS_II0785 VS_II0786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0786 PF03466 LysR substrate binding domain VS_II0787 PF00571 CBS domain VS_II0787 PF01226 Formate/nitrite transporter VS_II0788 PF04264 YceI-like domain VS_II0789 PF01292 Prokaryotic cytochrome b561 VS_II0790 PF01292 Prokaryotic cytochrome b561 VS_II0791 PF09932 VS_II0791 VS_II0794 PF00563 EAL domain VS_II0795 PF00873 AcrB/AcrD/AcrF family VS_II0796 PF16576 VS_II0796 VS_II0797 PF13437 HlyD family secretion protein VS_II0797 PF13533 Biotin-lipoyl like VS_II0798 PF00440 Bacterial regulatory proteins, tetR family VS_II0799 PF00270 DEAD/DEAH box helicase VS_II0799 PF00271 Helicase conserved C-terminal domain VS_II0800 PF04336 VS_II0800 VS_II0802 PF03222 Tryptophan/tyrosine permease family VS_II0803 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II0804 PF13419 Haloacid dehalogenase-like hydrolase VS_II0805 PF01966 HD domain VS_II0807 PF05981 VS_II0807 VS_II0808 PF00294 pfkB family carbohydrate kinase VS_II0809 PF01268 Formate--tetrahydrofolate ligase VS_II0810 PF00990 GGDEF domain VS_II0810 PF02743 Cache domain VS_II0810 PF13426 PAS domain VS_II0811 PF13419 Haloacid dehalogenase-like hydrolase VS_II0812 PF00472 RF-1 domain VS_II0813 PF01381 Helix-turn-helix VS_II0815 PF00089 Trypsin VS_II0816 PF01571 Aminomethyltransferase folate-binding domain VS_II0816 PF08669 Glycine cleavage T-protein C-terminal barrel domain VS_II0817 PF01381 Helix-turn-helix VS_II0817 PF07883 Cupin domain VS_II0818 PF00464 Serine hydroxymethyltransferase VS_II0819 PF01597 Glycine cleavage H-protein VS_II0820 PF02347 Glycine cleavage system P-protein VS_II0821 PF01551 Peptidase family M23 VS_II0823 PF00665 Integrase core domain VS_II0824 PF00665 Integrase core domain VS_II0824 PF13276 VS_II0824 VS_II0825 PF01527 Transposase VS_II0827 PF01548 VS_II0827 VS_II0827 PF02371 VS_II0827 VS_II0829 PF04828 Glutathione-dependent formaldehyde-activating enzyme VS_II0832 PF13304 AAA domain VS_II0832 PF14491 VS_II0832 VS_II0833 PF01554 MatE VS_II0834 PF01810 VS_II0834 VS_II0838 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II0839 PF00579 tRNA synthetases class I (W and Y) VS_II0841 PF00291 Pyridoxal-phosphate dependent enzyme VS_II0842 PF12833 Helix-turn-helix domain VS_II0843 PF01161 Phosphatidylethanolamine-binding protein VS_II0844 PF11884 Domain of unknown function (DUF3404) VS_II0845 PF00072 Response regulator receiver domain VS_II0845 PF00486 Transcriptional regulatory protein, C terminal VS_II0846 PF11060 VS_II0846 VS_II0847 PF11308 VS_II0847 VS_II0848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0848 PF03466 LysR substrate binding domain VS_II0849 PF00529 HlyD family secretion protein VS_II0849 PF16576 VS_II0849 VS_II0850 PF07690 Major Facilitator Superfamily VS_II0851 PF00072 Response regulator receiver domain VS_II0852 PF01627 Hpt domain VS_II0853 PF00140 Sigma-70 factor, region 1 VS_II0853 PF04542 Sigma-70 region 2 VS_II0853 PF04545 Sigma-70, region 4 VS_II0856 PF13620 Carboxypeptidase regulatory-like domain VS_II0858 PF13437 HlyD family secretion protein VS_II0859 PF00072 Response regulator receiver domain VS_II0860 PF02321 Outer membrane efflux protein VS_II0861 PF00005 ABC transporter VS_II0861 PF00664 ABC transporter transmembrane region VS_II0862 PF00005 ABC transporter VS_II0862 PF00664 ABC transporter transmembrane region VS_II0864 PF00072 Response regulator receiver domain VS_II0864 PF00512 His Kinase A (phospho-acceptor) domain VS_II0864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II0867 PF13432 Tetratricopeptide repeat VS_II0868 PF04055 Radical SAM superfamily VS_II0868 PF13186 Iron-sulfur cluster-binding domain VS_II0869 PF03781 Sulfatase-modifying factor enzyme 1 VS_II0870 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VS_II0871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0871 PF03466 LysR substrate binding domain VS_II0872 PF13584 VS_II0872 VS_II0873 PF13519 von Willebrand factor type A domain VS_II0874 PF00092 von Willebrand factor type A domain VS_II0875 PF14316 VS_II0875 VS_II0876 PF01882 VS_II0876 VS_II0877 PF07726 ATPase family associated with various cellular activities (AAA) VS_II0878 PF13424 Tetratricopeptide repeat VS_II0878 PF13435 Cytochrome c554 and c-prime VS_II0879 PF00884 Sulfatase VS_II0879 PF14707 C-terminal region of aryl-sulfatase VS_II0880 PF00884 Sulfatase VS_II0881 PF09829 VS_II0881 VS_II0882 PF13673 Acetyltransferase (GNAT) domain VS_II0883 PF02469 Fasciclin domain VS_II0884 PF13673 Acetyltransferase (GNAT) domain VS_II0885 PF07883 Cupin domain VS_II0886 PF10688 VS_II0886 VS_II0887 PF02567 Phenazine biosynthesis-like protein VS_II0888 PF01810 VS_II0888 VS_II0889 PF13416 Bacterial extracellular solute-binding protein VS_II0890 PF00563 EAL domain VS_II0890 PF00990 GGDEF domain VS_II0891 PF00990 GGDEF domain VS_II0893 PF00034 Cytochrome c VS_II0894 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_II0895 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VS_II0896 PF00034 Cytochrome c VS_II0896 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_II0897 PF09016 Pas factor saposin fold VS_II0899 PF00561 alpha/beta hydrolase fold VS_II0900 PF12525 VS_II0900 VS_II0902 PF02028 BCCT family transporter VS_II0903 PF01244 Membrane dipeptidase (Peptidase family M19) VS_II0904 PF00171 Aldehyde dehydrogenase family VS_II0905 PF01042 Endoribonuclease L-PSP VS_II0906 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0906 PF03466 LysR substrate binding domain VS_II0908 PF00119 ATP synthase A chain VS_II0909 PF00137 ATP synthase subunit C VS_II0910 PF00430 ATP synthase B/B' CF(0) VS_II0911 PF00213 ATP synthase delta (OSCP) subunit VS_II0912 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_II0912 PF00306 ATP synthase alpha/beta chain, C terminal domain VS_II0912 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_II0913 PF00231 ATP synthase VS_II0914 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_II0914 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_II0915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VS_II0915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VS_II0916 PF13275 S4 domain VS_II0918 PF00873 AcrB/AcrD/AcrF family VS_II0919 PF16576 VS_II0919 VS_II0920 PF02321 Outer membrane efflux protein VS_II0921 PF00313 'Cold-shock' DNA-binding domain VS_II0923 PF00486 Transcriptional regulatory protein, C terminal VS_II0925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0926 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VS_II0927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II0928 PF07969 Amidohydrolase family VS_II0931 PF04966 Carbohydrate-selective porin, OprB family VS_II0932 PF00005 ABC transporter VS_II0932 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II0933 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0933 PF12911 VS_II0933 VS_II0934 PF00528 Binding-protein-dependent transport system inner membrane component VS_II0935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II0936 PF03372 Endonuclease/Exonuclease/phosphatase family VS_II0938 PF13505 Outer membrane protein beta-barrel domain VS_II0939 PF00486 Transcriptional regulatory protein, C terminal VS_II0940 PF05025 RbsD / FucU transport protein family VS_II0941 PF00005 ABC transporter VS_II0942 PF02653 VS_II0942 VS_II0943 PF13407 Periplasmic binding protein domain VS_II0944 PF00294 pfkB family carbohydrate kinase VS_II0945 PF00356 Bacterial regulatory proteins, lacI family VS_II0945 PF13377 Periplasmic binding protein-like domain VS_II0947 PF00563 EAL domain VS_II0947 PF12792 VS_II0947 VS_II0948 PF01145 SPFH domain / Band 7 family VS_II0953 PF00384 Molybdopterin oxidoreductase VS_II0953 PF01568 Molydopterin dinucleotide binding domain VS_II0954 PF13665 VS_II0954 VS_II0955 PF14412 VS_II0955 VS_II0958 PF13665 VS_II0958 VS_II0961 PF14412 VS_II0961 VS_II0964 PF13665 VS_II0964 VS_II0967 PF14412 VS_II0967 VS_II0968 PF13665 VS_II0968 VS_II0971 PF14412 VS_II0971 VS_II0972 PF13665 VS_II0972 VS_II0975 PF14412 VS_II0975 VS_II0976 PF13665 VS_II0976 VS_II0979 PF14412 VS_II0979 VS_II0983 PF14412 VS_II0983 VS_II0984 PF13665 VS_II0984 VS_II0985 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VS_II0986 PF05936 VS_II0986 VS_II0987 PF12790 Type VI secretion lipoprotein VS_II0988 PF00498 FHA domain VS_II0990 PF06812 VS_II0990 VS_II0991 PF06744 VS_II0991 VS_II0991 PF06761 VS_II0991 VS_II0991 PF14331 VS_II0991 VS_II0992 PF01037 AsnC family VS_II0992 PF13404 AsnC-type helix-turn-helix domain VS_II0993 PF06996 VS_II0993 VS_II0994 PF05947 VS_II0994 VS_II0995 PF04965 Gene 25-like lysozyme VS_II0996 PF05943 VS_II0996 VS_II0997 PF05591 VS_II0997 VS_II0998 PF06812 VS_II0998 VS_II0998 PF16989 VS_II0998 VS_II0999 PF00069 Protein kinase domain VS_II1001 PF09937 VS_II1001 VS_II1004 PF05954 Phage late control gene D protein (GPD) VS_II1005 PF05638 Protein of unknown function (DUF796) VS_II1006 PF00004 ATPase family associated with various cellular activities (AAA) VS_II1006 PF07724 AAA domain (Cdc48 subfamily) VS_II1006 PF10431 C-terminal, D2-small domain, of ClpB protein VS_II1007 PF00158 Sigma-54 interaction domain VS_II1007 PF02954 Bacterial regulatory protein, Fis family VS_II1010 PF00691 OmpA family VS_II1024 PF01551 Peptidase family M23 VS_II1026 PF00384 Molybdopterin oxidoreductase VS_II1026 PF01568 Molydopterin dinucleotide binding domain VS_II1026 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_II1027 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_II1027 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_II1027 PF04324 BFD-like [2Fe-2S] binding domain VS_II1027 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1028 PF13806 Rieske-like [2Fe-2S] domain VS_II1029 PF07690 Major Facilitator Superfamily VS_II1030 PF00069 Protein kinase domain VS_II1030 PF13672 Protein phosphatase 2C VS_II1031 PF00356 Bacterial regulatory proteins, lacI family VS_II1031 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II1032 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1032 PF00381 PTS HPr component phosphorylation site VS_II1033 PF00294 pfkB family carbohydrate kinase VS_II1034 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1034 PF02378 Phosphotransferase system, EIIC VS_II1035 PF12833 Helix-turn-helix domain VS_II1037 PF00873 AcrB/AcrD/AcrF family VS_II1038 PF16576 VS_II1038 VS_II1039 PF13748 VS_II1039 VS_II1041 PF04116 VS_II1041 VS_II1042 PF00072 Response regulator receiver domain VS_II1042 PF00486 Transcriptional regulatory protein, C terminal VS_II1043 PF00512 His Kinase A (phospho-acceptor) domain VS_II1043 PF14501 GHKL domain VS_II1045 PF08883 Dopa 4,5-dioxygenase family VS_II1046 PF02798 Glutathione S-transferase, N-terminal domain VS_II1046 PF13410 Glutathione S-transferase, C-terminal domain VS_II1048 PF01844 HNH endonuclease VS_II1050 PF07690 Major Facilitator Superfamily VS_II1051 PF08774 VRR-NUC domain VS_II1052 PF06934 VS_II1052 VS_II1053 PF00072 Response regulator receiver domain VS_II1053 PF00512 His Kinase A (phospho-acceptor) domain VS_II1053 PF01627 Hpt domain VS_II1053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1054 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VS_II1055 PF02142 MGS-like domain VS_II1056 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1056 PF08447 PAS fold VS_II1057 PF01037 AsnC family VS_II1057 PF13412 Winged helix-turn-helix DNA-binding VS_II1062 PF00801 PKD domain VS_II1062 PF05547 VS_II1062 VS_II1063 PF07690 Major Facilitator Superfamily VS_II1064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1064 PF03466 LysR substrate binding domain VS_II1065 PF00072 Response regulator receiver domain VS_II1065 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_II1065 PF00512 His Kinase A (phospho-acceptor) domain VS_II1065 PF01627 Hpt domain VS_II1065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1066 PF00072 Response regulator receiver domain VS_II1066 PF01966 HD domain VS_II1067 PF00005 ABC transporter VS_II1068 PF01032 FecCD transport family VS_II1070 PF01032 FecCD transport family VS_II1071 PF01497 Periplasmic binding protein VS_II1073 PF07885 Ion channel VS_II1074 PF01594 VS_II1074 VS_II1075 PF11168 VS_II1075 VS_II1076 PF16576 VS_II1076 VS_II1078 PF12833 Helix-turn-helix domain VS_II1080 PF05232 VS_II1080 VS_II1081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1081 PF03466 LysR substrate binding domain VS_II1083 PF02581 Thiamine monophosphate synthase/TENI VS_II1084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1085 PF02110 Hydroxyethylthiazole kinase family VS_II1086 PF03070 TENA/THI-4/PQQC family VS_II1087 PF09084 NMT1/THI5 like VS_II1088 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1089 PF00005 ABC transporter VS_II1090 PF08543 Phosphomethylpyrimidine kinase VS_II1092 PF00892 EamA-like transporter family VS_II1093 PF12833 Helix-turn-helix domain VS_II1094 PF14321 VS_II1094 VS_II1095 PF11212 VS_II1095 VS_II1096 PF02698 DUF218 domain VS_II1097 PF00043 Glutathione S-transferase, C-terminal domain VS_II1097 PF02798 Glutathione S-transferase, N-terminal domain VS_II1100 PF00478 IMP dehydrogenase / GMP reductase domain VS_II1102 PF09669 VS_II1102 VS_II1110 PF00478 IMP dehydrogenase / GMP reductase domain VS_II1111 PF00989 PAS fold VS_II1112 PF00072 Response regulator receiver domain VS_II1114 PF01554 MatE VS_II1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1115 PF03466 LysR substrate binding domain VS_II1116 PF00892 EamA-like transporter family VS_II1117 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II1118 PF11280 VS_II1118 VS_II1119 PF08547 Complex I intermediate-associated protein 30 (CIA30) VS_II1120 PF08240 Alcohol dehydrogenase GroES-like domain VS_II1120 PF13602 Zinc-binding dehydrogenase VS_II1121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1121 PF03466 LysR substrate binding domain VS_II1123 PF00005 ABC transporter VS_II1124 PF01032 FecCD transport family VS_II1125 PF01032 FecCD transport family VS_II1126 PF01497 Periplasmic binding protein VS_II1127 PF00593 TonB dependent receptor VS_II1127 PF07715 TonB-dependent Receptor Plug Domain VS_II1128 PF00593 TonB dependent receptor VS_II1128 PF07715 TonB-dependent Receptor Plug Domain VS_II1130 PF04183 IucA / IucC family VS_II1130 PF06276 Ferric iron reductase FhuF-like transporter VS_II1131 PF07690 Major Facilitator Superfamily VS_II1132 PF04183 IucA / IucC family VS_II1132 PF06276 Ferric iron reductase FhuF-like transporter VS_II1133 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_II1133 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_II1135 PF00871 Acetokinase family VS_II1137 PF00270 DEAD/DEAH box helicase VS_II1137 PF00271 Helicase conserved C-terminal domain VS_II1137 PF03880 DbpA RNA binding domain VS_II1138 PF00575 S1 RNA binding domain VS_II1138 PF00773 RNB domain VS_II1138 PF08206 Ribonuclease B OB domain VS_II1139 PF12833 Helix-turn-helix domain VS_II1140 PF11225 VS_II1140 VS_II1141 PF12727 PBP superfamily domain VS_II1142 PF01575 MaoC like domain VS_II1143 PF00873 AcrB/AcrD/AcrF family VS_II1144 PF16576 VS_II1144 VS_II1145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_II1146 PF00924 Mechanosensitive ion channel VS_II1147 PF10517 VS_II1147 VS_II1148 PF01546 Peptidase family M20/M25/M40 VS_II1148 PF07687 Peptidase dimerisation domain VS_II1151 PF00248 Aldo/keto reductase family VS_II1152 PF00588 SpoU rRNA Methylase family VS_II1153 PF11953 Domain of unknown function (DUF3470) VS_II1153 PF13187 4Fe-4S dicluster domain VS_II1156 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1156 PF12793 VS_II1156 VS_II1157 PF00881 Nitroreductase family VS_II1158 PF00270 DEAD/DEAH box helicase VS_II1158 PF00271 Helicase conserved C-terminal domain VS_II1159 PF03479 Domain of unknown function (DUF296) VS_II1160 PF00929 Exonuclease VS_II1163 PF00270 DEAD/DEAH box helicase VS_II1163 PF00271 Helicase conserved C-terminal domain VS_II1163 PF03880 DbpA RNA binding domain VS_II1164 PF00248 Aldo/keto reductase family VS_II1166 PF01432 Peptidase family M3 VS_II1169 PF11383 VS_II1169 VS_II1170 PF00196 Bacterial regulatory proteins, luxR family VS_II1171 PF02631 RecX family VS_II1172 PF00924 Mechanosensitive ion channel VS_II1175 PF11412 Disulphide bond corrector protein DsbC VS_II1175 PF13899 Thioredoxin-like VS_II1177 PF00578 AhpC/TSA family VS_II1178 PF13462 Thioredoxin VS_II1179 PF01966 HD domain VS_II1180 PF13302 Acetyltransferase (GNAT) domain VS_II1181 PF00512 His Kinase A (phospho-acceptor) domain VS_II1181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1182 PF00072 Response regulator receiver domain VS_II1182 PF00486 Transcriptional regulatory protein, C terminal VS_II1184 PF00563 EAL domain VS_II1184 PF00990 GGDEF domain VS_II1186 PF00563 EAL domain VS_II1187 PF00392 Bacterial regulatory proteins, gntR family VS_II1188 PF00005 ABC transporter VS_II1191 PF03992 Antibiotic biosynthesis monooxygenase VS_II1192 PF06042 Bacterial protein of unknown function (DUF925) VS_II1193 PF16105 VS_II1193 VS_II1194 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_II1195 PF00293 NUDIX domain VS_II1196 PF00849 RNA pseudouridylate synthase VS_II1199 PF07690 Major Facilitator Superfamily VS_II1200 PF12146 Putative lysophospholipase VS_II1201 PF12833 Helix-turn-helix domain VS_II1202 PF03553 VS_II1202 VS_II1204 PF12706 Beta-lactamase superfamily domain VS_II1205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1205 PF12793 VS_II1205 VS_II1207 PF08443 RimK-like ATP-grasp domain VS_II1208 PF05618 Putative ATP-dependant zinc protease VS_II1209 PF00753 Metallo-beta-lactamase superfamily VS_II1210 PF13640 2OG-Fe(II) oxygenase superfamily VS_II1211 PF13416 Bacterial extracellular solute-binding protein VS_II1213 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1214 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1215 PF00005 ABC transporter VS_II1216 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_II1217 PF01925 VS_II1217 VS_II1218 PF03734 L,D-transpeptidase catalytic domain VS_II1219 PF00583 Acetyltransferase (GNAT) family VS_II1220 PF01755 VS_II1220 VS_II1221 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VS_II1223 PF04399 Glutaredoxin 2, C terminal domain VS_II1223 PF13417 Glutathione S-transferase, N-terminal domain VS_II1224 PF03618 VS_II1224 VS_II1225 PF00391 PEP-utilising enzyme, mobile domain VS_II1225 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VS_II1225 PF02896 PEP-utilising enzyme, TIM barrel domain VS_II1226 PF01554 MatE VS_II1227 PF08348 VS_II1227 VS_II1227 PF13309 VS_II1227 VS_II1228 PF01042 Endoribonuclease L-PSP VS_II1229 PF00375 Sodium:dicarboxylate symporter family VS_II1230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_II1230 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1247 PF11286 VS_II1247 VS_II1248 PF04013 Putative SAM-dependent RNA methyltransferase VS_II1249 PF13437 HlyD family secretion protein VS_II1250 PF13641 Glycosyltransferase like family 2 VS_II1252 PF03773 VS_II1252 VS_II1254 PF12840 Helix-turn-helix domain VS_II1255 PF04542 Sigma-70 region 2 VS_II1255 PF08281 Sigma-70, region 4 VS_II1256 PF02588 VS_II1256 VS_II1258 PF07690 Major Facilitator Superfamily VS_II1259 PF01925 VS_II1259 VS_II1260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1260 PF02743 Cache domain VS_II1261 PF01569 PAP2 superfamily VS_II1263 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VS_II1264 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1265 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1266 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1268 PF00005 ABC transporter VS_II1271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1271 PF03466 LysR substrate binding domain VS_II1272 PF13460 NADH(P)-binding VS_II1273 PF12973 ChrR Cupin-like domain VS_II1274 PF13561 Enoyl-(Acyl carrier protein) reductase VS_II1275 PF01638 HxlR-like helix-turn-helix VS_II1276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1276 PF03466 LysR substrate binding domain VS_II1277 PF00106 short chain dehydrogenase VS_II1278 PF03922 OmpW family VS_II1279 PF00483 Nucleotidyl transferase VS_II1280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_II1281 PF11216 VS_II1281 VS_II1282 PF08282 haloacid dehalogenase-like hydrolase VS_II1283 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1284 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1285 PF00005 ABC transporter VS_II1286 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein VS_II1287 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_II1288 PF00072 Response regulator receiver domain VS_II1288 PF00158 Sigma-54 interaction domain VS_II1288 PF02954 Bacterial regulatory protein, Fis family VS_II1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1290 PF06445 GyrI-like small molecule binding domain VS_II1290 PF12833 Helix-turn-helix domain VS_II1293 PF13230 Glutamine amidotransferases class-II VS_II1294 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VS_II1294 PF13378 Enolase C-terminal domain-like VS_II1295 PF07755 Protein of unknown function (DUF1611) VS_II1295 PF17396 VS_II1295 VS_II1296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1296 PF03466 LysR substrate binding domain VS_II1297 PF13472 GDSL-like Lipase/Acylhydrolase family VS_II1298 PF00128 Alpha amylase, catalytic domain VS_II1299 PF00588 SpoU rRNA Methylase family VS_II1300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1300 PF17200 VS_II1300 VS_II1301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1301 PF03466 LysR substrate binding domain VS_II1302 PF11777 VS_II1302 VS_II1303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1303 PF00672 HAMP domain VS_II1304 PF11215 VS_II1304 VS_II1305 PF00892 EamA-like transporter family VS_II1306 PF00155 Aminotransferase class I and II VS_II1306 PF00392 Bacterial regulatory proteins, gntR family VS_II1307 PF13508 Acetyltransferase (GNAT) domain VS_II1308 PF13411 MerR HTH family regulatory protein VS_II1308 PF13847 Methyltransferase domain VS_II1309 PF03222 Tryptophan/tyrosine permease family VS_II1310 PF01047 MarR family VS_II1311 PF02566 OsmC-like protein VS_II1312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1312 PF08376 Nitrate and nitrite sensing VS_II1315 PF00440 Bacterial regulatory proteins, tetR family VS_II1316 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1316 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1316 PF02378 Phosphotransferase system, EIIC VS_II1317 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1318 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1318 PF00381 PTS HPr component phosphorylation site VS_II1319 PF12833 Helix-turn-helix domain VS_II1320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1320 PF02378 Phosphotransferase system, EIIC VS_II1321 PF01238 Phosphomannose isomerase type I VS_II1322 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_II1323 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VS_II1324 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1325 PF00246 Zinc carboxypeptidase VS_II1326 PF06054 VS_II1326 VS_II1327 PF00107 Zinc-binding dehydrogenase VS_II1327 PF08240 Alcohol dehydrogenase GroES-like domain VS_II1328 PF00756 Putative esterase VS_II1329 PF00893 Small Multidrug Resistance protein VS_II1331 PF00293 NUDIX domain VS_II1332 PF01810 VS_II1332 VS_II1333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1333 PF03466 LysR substrate binding domain VS_II1334 PF00171 Aldehyde dehydrogenase family VS_II1336 PF00158 Sigma-54 interaction domain VS_II1336 PF01590 GAF domain VS_II1336 PF02954 Bacterial regulatory protein, Fis family VS_II1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1338 PF03466 LysR substrate binding domain VS_II1339 PF13417 Glutathione S-transferase, N-terminal domain VS_II1339 PF14834 Glutathione S-transferase, C-terminal domain VS_II1340 PF13443 Cro/C1-type HTH DNA-binding domain VS_II1341 PF11188 VS_II1341 VS_II1344 PF01613 Flavin reductase like domain VS_II1346 PF13642 protein structure with unknown function VS_II1349 PF03605 VS_II1349 VS_II1350 PF13419 Haloacid dehalogenase-like hydrolase VS_II1351 PF01966 HD domain VS_II1352 PF00583 Acetyltransferase (GNAT) family VS_II1353 PF03352 Methyladenine glycosylase VS_II1354 PF03547 VS_II1354 VS_II1359 PF01047 MarR family VS_II1360 PF00892 EamA-like transporter family VS_II1361 PF07690 Major Facilitator Superfamily VS_II1362 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_II1362 PF12793 VS_II1362 VS_II1363 PF01042 Endoribonuclease L-PSP VS_II1364 PF03992 Antibiotic biosynthesis monooxygenase VS_II1365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1365 PF03466 LysR substrate binding domain VS_II1366 PF00892 EamA-like transporter family VS_II1368 PF12833 Helix-turn-helix domain VS_II1369 PF01554 MatE VS_II1370 PF07690 Major Facilitator Superfamily VS_II1372 PF02958 Ecdysteroid kinase VS_II1373 PF14542 GCN5-related N-acetyl-transferase VS_II1374 PF07238 PilZ domain VS_II1374 PF12945 Flagellar protein YcgR VS_II1375 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_II1375 PF13654 AAA domain VS_II1377 PF00005 ABC transporter VS_II1377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II1383 PF00356 Bacterial regulatory proteins, lacI family VS_II1383 PF13377 Periplasmic binding protein-like domain VS_II1384 PF04685 Protein of unknown function, DUF608 VS_II1384 PF12215 VS_II1384 VS_II1385 PF01263 Aldose 1-epimerase VS_II1386 PF06165 Glycosyltransferase family 36 VS_II1386 PF17167 VS_II1386 VS_II1387 PF00005 ABC transporter VS_II1388 PF00232 Glycosyl hydrolase family 1 VS_II1389 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1390 PF00528 Binding-protein-dependent transport system inner membrane component VS_II1391 PF13416 Bacterial extracellular solute-binding protein VS_II1392 PF00356 Bacterial regulatory proteins, lacI family VS_II1392 PF13377 Periplasmic binding protein-like domain VS_II1393 PF02264 LamB porin VS_II1395 PF00326 Prolyl oligopeptidase family VS_II1395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_II1396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1396 PF03466 LysR substrate binding domain VS_II1397 PF02652 VS_II1397 VS_II1398 PF01070 FMN-dependent dehydrogenase VS_II1399 PF01565 FAD binding domain VS_II1399 PF02754 VS_II1399 VS_II1399 PF02913 FAD linked oxidases, C-terminal domain VS_II1399 PF13183 4Fe-4S dicluster domain VS_II1402 PF06445 GyrI-like small molecule binding domain VS_II1402 PF12833 Helix-turn-helix domain VS_II1403 PF00155 Aminotransferase class I and II VS_II1404 PF00581 Rhodanese-like domain VS_II1405 PF04325 Protein of unknown function (DUF465) VS_II1406 PF13673 Acetyltransferase (GNAT) domain VS_II1407 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VS_II1408 PF08895 VS_II1408 VS_II1409 PF00990 GGDEF domain VS_II1411 PF02678 Pirin VS_II1411 PF05726 Pirin C-terminal cupin domain VS_II1412 PF06865 Protein of unknown function (DUF1255) VS_II1413 PF11012 VS_II1413 VS_II1414 PF00704 Glycosyl hydrolases family 18 VS_II1414 PF08329 Chitinase A, N-terminal domain VS_II1415 PF12146 Putative lysophospholipase VS_II1417 PF00440 Bacterial regulatory proteins, tetR family VS_II1418 PF03547 VS_II1418 VS_II1419 PF01757 VS_II1419 VS_II1420 PF12833 Helix-turn-helix domain VS_II1420 PF12852 Cupin VS_II1422 PF01852 START domain VS_II1424 PF01124 MAPEG family VS_II1426 PF07670 Nucleoside recognition VS_II1427 PF07670 Nucleoside recognition VS_II1428 PF03600 Citrate transporter VS_II1430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VS_II1430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VS_II1431 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_II1431 PF02805 Metal binding domain of Ada VS_II1431 PF06029 AlkA N-terminal domain VS_II1431 PF12833 Helix-turn-helix domain VS_II1433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1433 PF03466 LysR substrate binding domain VS_II1434 PF04219 VS_II1434 VS_II1435 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VS_II1437 PF00881 Nitroreductase family VS_II1439 PF00258 Flavodoxin VS_II1439 PF00301 Rubredoxin VS_II1439 PF00753 Metallo-beta-lactamase superfamily VS_II1440 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_II1442 PF03616 VS_II1442 VS_II1443 PF10928 Protein of unknown function (DUF2810) VS_II1444 PF01757 VS_II1444 VS_II1445 PF04932 VS_II1445 VS_II1446 PF14552 Tautomerase enzyme VS_II1448 PF04542 Sigma-70 region 2 VS_II1448 PF08281 Sigma-70, region 4 VS_II1449 PF12973 ChrR Cupin-like domain VS_II1450 PF04463 VS_II1450 VS_II1450 PF08349 VS_II1450 VS_II1451 PF00875 DNA photolyase VS_II1451 PF03441 FAD binding domain of DNA photolyase VS_II1452 PF12680 SnoaL-like domain VS_II1453 PF00106 short chain dehydrogenase VS_II1454 PF01593 Flavin containing amine oxidoreductase VS_II1455 PF07103 VS_II1455 VS_II1456 PF02353 Mycolic acid cyclopropane synthetase VS_II1457 PF11086 VS_II1457 VS_II1458 PF16036 VS_II1458 VS_II1459 PF12915 VS_II1459 VS_II1462 PF00106 short chain dehydrogenase VS_II1463 PF00076 RNA recognition motif VS_II1464 PF12614 VS_II1464 VS_II1466 PF00155 Aminotransferase class I and II VS_II1467 PF02566 OsmC-like protein VS_II1468 PF04828 Glutathione-dependent formaldehyde-activating enzyme VS_II1470 PF00367 phosphotransferase system, EIIB VS_II1470 PF02378 Phosphotransferase system, EIIC VS_II1474 PF00512 His Kinase A (phospho-acceptor) domain VS_II1474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1475 PF00072 Response regulator receiver domain VS_II1475 PF00486 Transcriptional regulatory protein, C terminal VS_II1476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1476 PF03466 LysR substrate binding domain VS_II1477 PF13561 Enoyl-(Acyl carrier protein) reductase VS_II1478 PF07690 Major Facilitator Superfamily VS_II1479 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_II1480 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VS_II1481 PF02355 Protein export membrane protein VS_II1481 PF07549 SecD/SecF GG Motif VS_II1482 PF02355 Protein export membrane protein VS_II1482 PF07549 SecD/SecF GG Motif VS_II1482 PF13721 SecD export protein N-terminal TM region VS_II1485 PF00675 Insulinase (Peptidase family M16) VS_II1485 PF05193 Peptidase M16 inactive domain VS_II1486 PF00675 Insulinase (Peptidase family M16) VS_II1486 PF05193 Peptidase M16 inactive domain VS_II1487 PF00072 Response regulator receiver domain VS_II1487 PF04397 LytTr DNA-binding domain VS_II1488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1488 PF06580 VS_II1488 VS_II1490 PF17131 VS_II1490 VS_II1491 PF02687 VS_II1491 VS_II1491 PF12704 MacB-like periplasmic core domain VS_II1492 PF00005 ABC transporter VS_II1494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1494 PF03466 LysR substrate binding domain VS_II1498 PF02627 Carboxymuconolactone decarboxylase family VS_II1499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1499 PF03466 LysR substrate binding domain VS_II1500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_II1500 PF12729 VS_II1500 VS_II1501 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_II1501 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VS_II1502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_II1502 PF03466 LysR substrate binding domain VS_II1503 PF11391 VS_II1503 VS_II1504 PF01709 Transcriptional regulator VS_II1505 PF11686 VS_II1505 VS_II1507 PF02661 Fic/DOC family VS_II1507 PF13776 VS_II1507 VS_II1508 PF01329 Pterin 4 alpha carbinolamine dehydratase VS_II1509 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VS_II1510 PF00501 AMP-binding enzyme VS_II1512 PF13665 VS_II1512 VS_II1513 PF14412 VS_II1513 VS_II1517 PF00696 Amino acid kinase family VS_II1518 PF02798 Glutathione S-transferase, N-terminal domain VS_II1519 PF01557 Fumarylacetoacetate (FAA) hydrolase family VS_II1520 PF04209 homogentisate 1,2-dioxygenase VS_II1521 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_II1521 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal VS_II1523 PF12710 haloacid dehalogenase-like hydrolase VS_II1524 PF00072 Response regulator receiver domain VS_II1524 PF00512 His Kinase A (phospho-acceptor) domain VS_II1524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_II1524 PF17149 VS_II1524 VS_II1525 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_II1526 PF08719 Domain of unknown function (DUF1768) VS_II1528 PF00005 ABC transporter VS_II1529 PF00005 ABC transporter VS_II1529 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_II1532 PF11826 VS_II1532