VS_0004 SM01234 VS_0004 VS_0007 SM00382 ATPases associated with a variety of cellular activities VS_0009 SM00062 Bacterial periplasmic substrate-binding proteins VS_0009 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VS_0010 SM00382 ATPases associated with a variety of cellular activities VS_0010 SM00760 Bacterial dnaA protein helix-turn-helix domain VS_0011 SM00480 DNA polymerase III beta subunit VS_0013 SM00387 Histidine kinase-like ATPases VS_0013 SM00433 TopoisomeraseII VS_0030 SM00387 Histidine kinase-like ATPases VS_0031 SM00448 cheY-homologous receiver domain VS_0031 SM00862 Transcriptional regulatory protein, C terminal VS_0039 SM00829 Enoylreductase VS_0074 SM00382 ATPases associated with a variety of cellular activities VS_0085 SM00344 helix_turn_helix ASNC type VS_0086 SM00052 Putative diguanylate phosphodiesterase VS_0086 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VS_0086 SM00091 PAS domain VS_0086 SM00267 diguanylate cyclase VS_0105 SM01004 Delta-aminolevulinic acid dehydratase VS_0108 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VS_0108 SM00474 3'-5' exonuclease VS_0108 SM00475 5'-3' exonuclease VS_0108 SM00482 DNA polymerase A domain VS_0116 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0117 SM00052 Putative diguanylate phosphodiesterase VS_0117 SM00267 diguanylate cyclase VS_0117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0118 SM00382 ATPases associated with a variety of cellular activities VS_0118 SM00448 cheY-homologous receiver domain VS_0119 SM00091 PAS domain VS_0119 SM00387 Histidine kinase-like ATPases VS_0119 SM00388 His Kinase A (phosphoacceptor) domain VS_0121 SM01230 VS_0121 VS_0133 SM00363 S4 RNA-binding domain VS_0136 SM00382 ATPases associated with a variety of cellular activities VS_0153 SM00316 Ribosomal protein S1-like RNA-binding domain VS_0153 SM00732 Likely ribonuclease with RNase H fold. VS_0156 SM00448 cheY-homologous receiver domain VS_0156 SM00862 Transcriptional regulatory protein, C terminal VS_0157 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0157 SM00387 Histidine kinase-like ATPases VS_0157 SM00388 His Kinase A (phosphoacceptor) domain VS_0158 SM00487 DEAD-like helicases superfamily VS_0158 SM00490 helicase superfamily c-terminal domain VS_0159 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_0159 SM00954 Region found in RelA / SpoT proteins VS_0160 SM01409 VS_0160 VS_0161 SM00072 Guanylate kinase homologues. VS_0168 SM00861 Transketolase, pyrimidine binding domain VS_0174 SM00420 helix_turn_helix, Deoxyribose operon repressor VS_0174 SM01134 VS_0174 VS_0175 SM00357 Cold shock protein domain VS_0186 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VS_0186 SM01232 VS_0186 VS_0187 SM00672 Putative lipopolysaccharide-modifying enzyme. VS_0204 SM00971 Serine acetyltransferase, N-terminal VS_0207 SM00450 Rhodanese Homology Domain VS_0214 SM00226 Low molecular weight phosphatase family VS_0238 SM00883 Chaperonin 10 Kd subunit VS_0241 SM00267 diguanylate cyclase VS_0244 SM00841 Elongation factor P, C-terminal VS_0244 SM01185 VS_0244 VS_0251 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_0251 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0255 SM00479 VS_0255 VS_0267 SM00257 Lysin motif VS_0267 SM00646 VS_0267 VS_0268 SM00853 MutL C terminal dimerisation domain VS_0268 SM01340 VS_0268 VS_0272 SM00244 prohibitin homologues VS_0273 SM00244 prohibitin homologues VS_0275 SM00788 Adenylosuccinate synthetase VS_0276 SM00671 Sel1-like repeats. VS_0278 SM00316 Ribosomal protein S1-like RNA-binding domain VS_0278 SM00357 Cold shock protein domain VS_0278 SM00955 VS_0278 VS_0279 SM00967 RNA 2'-O ribose methyltransferase substrate binding VS_0285 SM01005 Alanine racemase, C-terminal domain VS_0315 SM01018 B12 binding domain VS_0322 SM00421 helix_turn_helix, Lux Regulon VS_0324 SM00052 Putative diguanylate phosphodiesterase VS_0324 SM00267 diguanylate cyclase VS_0328 SM00965 Secretin and TonB N terminus short domain VS_0331 SM00382 ATPases associated with a variety of cellular activities VS_0345 SM00316 Ribosomal protein S1-like RNA-binding domain VS_0349 SM00670 Large family of predicted nucleotide-binding domains VS_0350 SM00487 DEAD-like helicases superfamily VS_0350 SM00490 helicase superfamily c-terminal domain VS_0370 SM00650 Ribosomal RNA adenine dimethylases VS_0374 SM00271 DnaJ molecular chaperone homology domain VS_0379 SM01329 VS_0379 VS_0380 SM00917 LeuA allosteric (dimerisation) domain VS_0384 SM00014 Acid phosphatase homologues VS_0391 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_0391 SM00895 VS_0391 VS_0393 SM00420 helix_turn_helix, Deoxyribose operon repressor VS_0393 SM01134 VS_0393 VS_0398 SM00400 zinc finger VS_0398 SM00493 VS_0398 VS_0398 SM00766 DNA primase DnaG DnaB-binding VS_0403 SM01207 VS_0403 VS_0404 SM00905 Dihydroneopterin aldolase VS_0408 SM00382 ATPases associated with a variety of cellular activities VS_0410 SM00287 Bacterial SH3 domain homologues VS_0413 SM00880 VS_0413 VS_0413 SM01118 VS_0413 VS_0415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_0415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0423 SM00387 Histidine kinase-like ATPases VS_0423 SM00433 TopoisomeraseII VS_0424 SM00434 DNA Topoisomerase IV VS_0425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VS_0426 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VS_0436 SM00749 bacterial OsmY and nodulation domain VS_0453 SM00842 Cell division protein FtsA VS_0454 SM00864 Tubulin/FtsZ family, GTPase domain VS_0454 SM00865 Tubulin/FtsZ family, C-terminal domain VS_0456 SM00957 SecA DEAD-like domain VS_0456 SM00958 SecA preprotein cross-linking domain VS_0461 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VS_0462 SM00851 MGS-like domain VS_0462 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VS_0475 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0476 SM00091 PAS domain VS_0476 SM00267 diguanylate cyclase VS_0477 SM00073 Histidine Phosphotransfer domain VS_0477 SM00091 PAS domain VS_0477 SM00387 Histidine kinase-like ATPases VS_0477 SM00388 His Kinase A (phosphoacceptor) domain VS_0477 SM00448 cheY-homologous receiver domain VS_0479 SM00448 cheY-homologous receiver domain VS_0479 SM00862 Transcriptional regulatory protein, C terminal VS_0499 SM00518 AP endonuclease family 2 VS_0501 SM00986 Uracil DNA glycosylase superfamily VS_0501 SM00987 UreE urease accessory protein, C-terminal domain VS_0506 SM00487 DEAD-like helicases superfamily VS_0506 SM00490 helicase superfamily c-terminal domain VS_0516 SM00937 VS_0516 VS_0518 SM00382 ATPases associated with a variety of cellular activities VS_0522 SM00927 DNA mismatch repair enzyme MutH VS_0524 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_0528 SM00862 Transcriptional regulatory protein, C terminal VS_0532 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VS_0535 SM00904 Riboflavin kinase VS_0540 SM00448 cheY-homologous receiver domain VS_0540 SM00850 LytTr DNA-binding domain VS_0548 SM00830 Chorismate mutase type II VS_0551 SM00382 ATPases associated with a variety of cellular activities VS_0555 SM00052 Putative diguanylate phosphodiesterase VS_0555 SM00267 diguanylate cyclase VS_0556 SM00830 Chorismate mutase type II VS_0558 SM00062 Bacterial periplasmic substrate-binding proteins VS_0560 SM00363 S4 RNA-binding domain VS_0562 SM00382 ATPases associated with a variety of cellular activities VS_0562 SM01086 C-terminal, D2-small domain, of ClpB protein VS_0579 SM00448 cheY-homologous receiver domain VS_0579 SM00862 Transcriptional regulatory protein, C terminal VS_0580 SM00091 PAS domain VS_0580 SM00387 Histidine kinase-like ATPases VS_0580 SM00388 His Kinase A (phosphoacceptor) domain VS_0587 SM00382 ATPases associated with a variety of cellular activities VS_0595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_0597 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_0600 SM01323 VS_0600 VS_0610 SM00271 DnaJ molecular chaperone homology domain VS_0615 SM00562 VS_0615 VS_0616 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0622 SM00564 beta-propeller repeat VS_0623 SM00382 ATPases associated with a variety of cellular activities VS_0625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_0625 SM00267 diguanylate cyclase VS_0628 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_0628 SM01240 VS_0628 VS_0630 SM00495 Chitin-binding domain type 3 VS_0634 SM00849 Metallo-beta-lactamase superfamily VS_0634 SM01027 Beta-Casp domain VS_0635 SM00563 Phosphate acyltransferases VS_0652 SM00271 DnaJ molecular chaperone homology domain VS_0660 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_0660 SM01091 Transporter associated domain VS_0663 SM00062 Bacterial periplasmic substrate-binding proteins VS_0664 SM01211 VS_0664 VS_0680 SM00925 MltA specific insert domain VS_0695 SM00900 VS_0695 VS_0701 SM00267 diguanylate cyclase VS_0701 SM00448 cheY-homologous receiver domain VS_0703 SM00487 DEAD-like helicases superfamily VS_0703 SM00490 helicase superfamily c-terminal domain VS_0707 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0710 SM00936 Penicillin-binding protein 5, C-terminal domain VS_0721 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_0721 SM01091 Transporter associated domain VS_0724 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0748 SM01400 VS_0748 VS_0752 SM00937 VS_0752 VS_0759 SM00363 S4 RNA-binding domain VS_0760 SM00463 Small MutS-related domain VS_0765 SM01081 Putative carbohydrate binding domain VS_0770 SM00825 Beta-ketoacyl synthase VS_0771 SM00822 VS_0771 VS_0773 SM00825 Beta-ketoacyl synthase VS_0786 SM00563 Phosphate acyltransferases VS_0798 SM00858 VS_0798 VS_0799 SM00260 Two component signalling adaptor domain VS_0799 SM00448 cheY-homologous receiver domain VS_0800 SM00138 Methyltransferase, chemotaxis proteins VS_0809 SM00047 Lysozyme subfamily 2 VS_0819 SM00382 ATPases associated with a variety of cellular activities VS_0820 SM00091 PAS domain VS_0820 SM00387 Histidine kinase-like ATPases VS_0820 SM00388 His Kinase A (phosphoacceptor) domain VS_0821 SM00382 ATPases associated with a variety of cellular activities VS_0821 SM00448 cheY-homologous receiver domain VS_0826 SM00382 ATPases associated with a variety of cellular activities VS_0838 SM00382 ATPases associated with a variety of cellular activities VS_0838 SM00962 SRP54-type protein, GTPase domain VS_0841 SM00448 cheY-homologous receiver domain VS_0843 SM00073 Histidine Phosphotransfer domain VS_0843 SM00260 Two component signalling adaptor domain VS_0843 SM00387 Histidine kinase-like ATPases VS_0843 SM01231 VS_0843 VS_0844 SM00448 cheY-homologous receiver domain VS_0846 SM00260 Two component signalling adaptor domain VS_0847 SM00260 Two component signalling adaptor domain VS_0849 SM00382 ATPases associated with a variety of cellular activities VS_0867 SM00855 Phosphoglycerate mutase family VS_0868 SM00463 Small MutS-related domain VS_0873 SM00448 cheY-homologous receiver domain VS_0873 SM00862 Transcriptional regulatory protein, C terminal VS_0874 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0874 SM00387 Histidine kinase-like ATPases VS_0874 SM00388 His Kinase A (phosphoacceptor) domain VS_0878 SM00382 ATPases associated with a variety of cellular activities VS_0898 SM00825 Beta-ketoacyl synthase VS_0901 SM00859 Semialdehyde dehydrogenase, NAD binding domain VS_0910 SM00448 cheY-homologous receiver domain VS_0915 SM00382 ATPases associated with a variety of cellular activities VS_0918 SM00493 VS_0918 VS_0924 SM00098 Alkaline phosphatase homologues VS_0929 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_0929 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_0932 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_0936 SM00870 VS_0936 VS_0940 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VS_0940 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VS_0940 SM00493 VS_0940 VS_0955 SM00859 Semialdehyde dehydrogenase, NAD binding domain VS_0964 SM00062 Bacterial periplasmic substrate-binding proteins VS_0964 SM00387 Histidine kinase-like ATPases VS_0964 SM00388 His Kinase A (phosphoacceptor) domain VS_0964 SM00448 cheY-homologous receiver domain VS_0965 SM00448 cheY-homologous receiver domain VS_0967 SM00479 VS_0967 VS_0971 SM00478 endonuclease III VS_0971 SM00525 VS_0971 VS_0973 SM00900 VS_0973 VS_0980 SM00487 DEAD-like helicases superfamily VS_0980 SM00490 helicase superfamily c-terminal domain VS_0982 SM00382 ATPases associated with a variety of cellular activities VS_0982 SM00448 cheY-homologous receiver domain VS_0985 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_0986 SM00852 Probable molybdopterin binding domain VS_0993 SM00382 ATPases associated with a variety of cellular activities VS_0994 SM00382 ATPases associated with a variety of cellular activities VS_0996 SM00052 Putative diguanylate phosphodiesterase VS_0996 SM00267 diguanylate cyclase VS_0996 SM01049 VS_0996 VS_1001 SM00267 diguanylate cyclase VS_1007 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1014 SM00226 Low molecular weight phosphatase family VS_1016 SM00316 Ribosomal protein S1-like RNA-binding domain VS_1017 SM00363 S4 RNA-binding domain VS_1023 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VS_1024 SM00822 VS_1024 VS_1026 SM00825 Beta-ketoacyl synthase VS_1039 SM00260 Two component signalling adaptor domain VS_1039 SM00448 cheY-homologous receiver domain VS_1040 SM00481 DNA polymerase alpha chain like domain VS_1043 SM00822 VS_1043 VS_1047 SM00763 PrkA AAA domain VS_1054 SM00382 ATPases associated with a variety of cellular activities VS_1055 SM00062 Bacterial periplasmic substrate-binding proteins VS_1055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VS_1058 SM01276 VS_1058 VS_1062 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1062 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1063 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. VS_1067 SM00491 VS_1067 VS_1072 SM00357 Cold shock protein domain VS_1074 SM00382 ATPases associated with a variety of cellular activities VS_1074 SM01086 C-terminal, D2-small domain, of ClpB protein VS_1075 SM00316 Ribosomal protein S1-like RNA-binding domain VS_1081 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VS_1081 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VS_1081 SM00493 VS_1081 VS_1088 SM00354 helix_turn _helix lactose operon repressor VS_1091 SM00448 cheY-homologous receiver domain VS_1091 SM00862 Transcriptional regulatory protein, C terminal VS_1097 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1106 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1107 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VS_1108 SM00382 ATPases associated with a variety of cellular activities VS_1118 SM00028 Tetratricopeptide repeats VS_1126 SM00382 ATPases associated with a variety of cellular activities VS_1129 SM00387 Histidine kinase-like ATPases VS_1129 SM00388 His Kinase A (phosphoacceptor) domain VS_1129 SM00448 cheY-homologous receiver domain VS_1136 SM00387 Histidine kinase-like ATPases VS_1136 SM00388 His Kinase A (phosphoacceptor) domain VS_1137 SM00448 cheY-homologous receiver domain VS_1137 SM00862 Transcriptional regulatory protein, C terminal VS_1141 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_1153 SM00062 Bacterial periplasmic substrate-binding proteins VS_1155 SM00062 Bacterial periplasmic substrate-binding proteins VS_1155 SM00091 PAS domain VS_1155 SM00387 Histidine kinase-like ATPases VS_1155 SM00388 His Kinase A (phosphoacceptor) domain VS_1155 SM00448 cheY-homologous receiver domain VS_1156 SM00052 Putative diguanylate phosphodiesterase VS_1156 SM00448 cheY-homologous receiver domain VS_1157 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1157 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1162 SM00382 ATPases associated with a variety of cellular activities VS_1172 SM00487 DEAD-like helicases superfamily VS_1172 SM00490 helicase superfamily c-terminal domain VS_1175 SM00631 VS_1175 VS_1179 SM00382 ATPases associated with a variety of cellular activities VS_1184 SM00382 ATPases associated with a variety of cellular activities VS_1185 SM00382 ATPases associated with a variety of cellular activities VS_1195 SM00267 diguanylate cyclase VS_1197 SM00267 diguanylate cyclase VS_1202 SM00919 Malic enzyme, NAD binding domain VS_1202 SM01274 VS_1202 VS_1203 SM00487 DEAD-like helicases superfamily VS_1203 SM00490 helicase superfamily c-terminal domain VS_1208 SM00671 Sel1-like repeats. VS_1220 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1220 SM00866 VS_1220 VS_1228 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VS_1232 SM01022 VS_1232 VS_1234 SM00220 Serine/Threonine protein kinases, catalytic domain VS_1234 SM00364 Leucine-rich repeats, bacterial type VS_1234 SM00369 Leucine-rich repeats, typical (most populated) subfamily VS_1235 SM00382 ATPases associated with a variety of cellular activities VS_1250 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1250 SM00895 VS_1250 VS_1251 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1251 SM00895 VS_1251 VS_1252 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_1253 SM00479 VS_1253 VS_1265 SM00886 Stress responsive A/B Barrel Domain VS_1275 SM00387 Histidine kinase-like ATPases VS_1276 SM00448 cheY-homologous receiver domain VS_1279 SM00357 Cold shock protein domain VS_1302 SM00387 Histidine kinase-like ATPases VS_1303 SM00448 cheY-homologous receiver domain VS_1306 SM01350 VS_1306 VS_1307 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_1315 SM00387 Histidine kinase-like ATPases VS_1315 SM00388 His Kinase A (phosphoacceptor) domain VS_1315 SM00448 cheY-homologous receiver domain VS_1316 SM00448 cheY-homologous receiver domain VS_1316 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_1317 SM00220 Serine/Threonine protein kinases, catalytic domain VS_1322 SM00240 Forkhead associated domain VS_1326 SM00382 ATPases associated with a variety of cellular activities VS_1326 SM01086 C-terminal, D2-small domain, of ClpB protein VS_1341 SM00062 Bacterial periplasmic substrate-binding proteins VS_1342 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1342 SM00895 VS_1342 VS_1357 SM00530 Helix-turn-helix XRE-family like proteins VS_1359 SM00487 DEAD-like helicases superfamily VS_1362 SM00271 DnaJ molecular chaperone homology domain VS_1370 SM00507 HNH nucleases VS_1376 SM00487 DEAD-like helicases superfamily VS_1376 SM00490 helicase superfamily c-terminal domain VS_1385 SM00487 DEAD-like helicases superfamily VS_1385 SM00490 helicase superfamily c-terminal domain VS_1390 SM00028 Tetratricopeptide repeats VS_1390 SM00267 diguanylate cyclase VS_1394 SM00327 von Willebrand factor (vWF) type A domain VS_1395 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VS_1396 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1400 SM00382 ATPases associated with a variety of cellular activities VS_1403 SM00062 Bacterial periplasmic substrate-binding proteins VS_1410 SM00316 Ribosomal protein S1-like RNA-binding domain VS_1414 SM00382 ATPases associated with a variety of cellular activities VS_1416 SM00945 ProQ/FINO family VS_1417 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VS_1417 SM00245 tail specific protease VS_1424 SM00981 VS_1424 VS_1426 SM00382 ATPases associated with a variety of cellular activities VS_1450 SM00530 Helix-turn-helix XRE-family like proteins VS_1456 SM00387 Histidine kinase-like ATPases VS_1456 SM00388 His Kinase A (phosphoacceptor) domain VS_1456 SM00448 cheY-homologous receiver domain VS_1457 SM00897 FIST N domain VS_1457 SM01204 VS_1457 VS_1467 SM00100 Cyclic nucleotide-monophosphate binding domain VS_1467 SM00419 helix_turn_helix, cAMP Regulatory protein VS_1474 SM00382 ATPases associated with a variety of cellular activities VS_1479 SM00267 diguanylate cyclase VS_1485 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VS_1493 SM00382 ATPases associated with a variety of cellular activities VS_1494 SM00382 ATPases associated with a variety of cellular activities VS_1497 SM00387 Histidine kinase-like ATPases VS_1497 SM00388 His Kinase A (phosphoacceptor) domain VS_1498 SM00382 ATPases associated with a variety of cellular activities VS_1498 SM00448 cheY-homologous receiver domain VS_1501 SM00382 ATPases associated with a variety of cellular activities VS_1503 SM00852 Probable molybdopterin binding domain VS_1504 SM00028 Tetratricopeptide repeats VS_1504 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_1504 SM00267 diguanylate cyclase VS_1508 SM01144 VS_1508 VS_1510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1525 SM00382 ATPases associated with a variety of cellular activities VS_1527 SM00382 ATPases associated with a variety of cellular activities VS_1527 SM00448 cheY-homologous receiver domain VS_1536 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1536 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1536 SM01049 VS_1536 VS_1563 SM00062 Bacterial periplasmic substrate-binding proteins VS_1563 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VS_1564 SM00382 ATPases associated with a variety of cellular activities VS_1565 SM00382 ATPases associated with a variety of cellular activities VS_1571 SM00871 Bacterial transcription activator, effector binding domain VS_1577 SM00822 VS_1577 VS_1601 SM00363 S4 RNA-binding domain VS_1610 SM01022 VS_1610 VS_1622 SM00090 RIO-like kinase VS_1631 SM00091 PAS domain VS_1631 SM00267 diguanylate cyclase VS_1636 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1636 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1637 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_1642 SM00788 Adenylosuccinate synthetase VS_1646 SM00490 helicase superfamily c-terminal domain VS_1648 SM00487 DEAD-like helicases superfamily VS_1648 SM00490 helicase superfamily c-terminal domain VS_1673 SM00028 Tetratricopeptide repeats VS_1673 SM00267 diguanylate cyclase VS_1678 SM00028 Tetratricopeptide repeats VS_1685 SM00267 diguanylate cyclase VS_1691 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1692 SM00495 Chitin-binding domain type 3 VS_1695 SM00382 ATPases associated with a variety of cellular activities VS_1699 SM00855 Phosphoglycerate mutase family VS_1703 SM00903 Flavin reductase like domain VS_1710 SM00342 helix_turn_helix, arabinose operon control protein VS_1713 SM00479 VS_1713 VS_1721 SM00411 bacterial (prokaryotic) histone like domain VS_1723 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1725 SM00387 Histidine kinase-like ATPases VS_1725 SM00448 cheY-homologous receiver domain VS_1728 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1728 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1735 SM00411 bacterial (prokaryotic) histone like domain VS_1744 SM00344 helix_turn_helix ASNC type VS_1745 SM00671 Sel1-like repeats. VS_1749 SM00905 Dihydroneopterin aldolase VS_1765 SM00873 B3/4 domain VS_1765 SM00874 tRNA synthetase B5 domain VS_1765 SM00896 Ferredoxin-fold anticodon binding domain VS_1775 SM00382 ATPases associated with a variety of cellular activities VS_1775 SM00487 DEAD-like helicases superfamily VS_1775 SM00490 helicase superfamily c-terminal domain VS_1775 SM00847 Helicase associated domain (HA2) Add an annotation VS_1781 SM00862 Transcriptional regulatory protein, C terminal VS_1784 SM00479 VS_1784 VS_1785 SM00267 diguanylate cyclase VS_1785 SM01079 VS_1785 VS_1793 SM00091 PAS domain VS_1793 SM00382 ATPases associated with a variety of cellular activities VS_1800 SM00387 Histidine kinase-like ATPases VS_1800 SM00388 His Kinase A (phosphoacceptor) domain VS_1800 SM00448 cheY-homologous receiver domain VS_1807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1814 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_1816 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_1821 SM00100 Cyclic nucleotide-monophosphate binding domain VS_1821 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_1822 SM00479 VS_1822 VS_1826 SM00387 Histidine kinase-like ATPases VS_1826 SM00388 His Kinase A (phosphoacceptor) domain VS_1827 SM00448 cheY-homologous receiver domain VS_1848 SM00382 ATPases associated with a variety of cellular activities VS_1853 SM00363 S4 RNA-binding domain VS_1854 SM00487 DEAD-like helicases superfamily VS_1854 SM00490 helicase superfamily c-terminal domain VS_1855 SM00052 Putative diguanylate phosphodiesterase VS_1855 SM00267 diguanylate cyclase VS_1857 SM00448 cheY-homologous receiver domain VS_1857 SM00862 Transcriptional regulatory protein, C terminal VS_1858 SM00387 Histidine kinase-like ATPases VS_1896 SM01034 Sensors of blue-light using FAD VS_1903 SM00382 ATPases associated with a variety of cellular activities VS_1907 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1907 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1910 SM00421 helix_turn_helix, Lux Regulon VS_1910 SM00448 cheY-homologous receiver domain VS_1911 SM00387 Histidine kinase-like ATPases VS_1911 SM01049 VS_1911 VS_1917 SM00849 Metallo-beta-lactamase superfamily VS_1934 SM00450 Rhodanese Homology Domain VS_1935 SM00028 Tetratricopeptide repeats VS_1936 SM00434 DNA Topoisomerase IV VS_1942 SM00852 Probable molybdopterin binding domain VS_1954 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VS_1955 SM00465 GIY-YIG type nucleases (URI domain) VS_1956 SM00421 helix_turn_helix, Lux Regulon VS_1956 SM00448 cheY-homologous receiver domain VS_1957 SM00486 DNA polymerase type-B family VS_1959 SM00841 Elongation factor P, C-terminal VS_1959 SM01185 VS_1959 VS_1962 SM00363 S4 RNA-binding domain VS_1964 SM00481 DNA polymerase alpha chain like domain VS_1972 SM00244 prohibitin homologues VS_1979 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_1979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_1981 SM00155 Phospholipase D. Active site motifs. VS_1984 SM00862 Transcriptional regulatory protein, C terminal VS_1992 SM00382 ATPases associated with a variety of cellular activities VS_1996 SM00382 ATPases associated with a variety of cellular activities VS_1997 SM00382 ATPases associated with a variety of cellular activities VS_2001 SM01131 VS_2001 VS_2014 SM00840 VS_2014 VS_2017 SM00052 Putative diguanylate phosphodiesterase VS_2029 SM00528 Domain in histone-like proteins of HNS family VS_2040 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_2040 SM00876 Biotin and Thiamin Synthesis associated domain VS_2042 SM00448 cheY-homologous receiver domain VS_2044 SM00382 ATPases associated with a variety of cellular activities VS_2046 SM00843 VS_2046 VS_2047 SM00344 helix_turn_helix ASNC type VS_2048 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VS_2048 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VS_2053 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_2054 SM00028 Tetratricopeptide repeats VS_2056 SM00411 bacterial (prokaryotic) histone like domain VS_2057 SM00316 Ribosomal protein S1-like RNA-binding domain VS_2062 SM00382 ATPases associated with a variety of cellular activities VS_2063 SM00849 Metallo-beta-lactamase superfamily VS_2066 SM00382 ATPases associated with a variety of cellular activities VS_2069 SM00487 DEAD-like helicases superfamily VS_2069 SM00490 helicase superfamily c-terminal domain VS_2069 SM00982 VS_2069 VS_2069 SM01058 CarD-like/TRCF domain VS_2080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_2080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_2085 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_2093 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_2101 SM00849 Metallo-beta-lactamase superfamily VS_2112 SM00382 ATPases associated with a variety of cellular activities VS_2115 SM00895 VS_2115 VS_2129 SM00344 helix_turn_helix ASNC type VS_2133 SM00422 helix_turn_helix, mercury resistance VS_2138 SM00704 CDGSH-type zinc finger. Function unknown. VS_2141 SM00382 ATPases associated with a variety of cellular activities VS_2159 SM00342 helix_turn_helix, arabinose operon control protein VS_2168 SM00344 helix_turn_helix ASNC type VS_2180 SM00978 VS_2180 VS_2182 SM00563 Phosphate acyltransferases VS_2188 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VS_2195 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_2196 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_2197 SM01144 VS_2197 VS_2201 SM00411 bacterial (prokaryotic) histone like domain VS_2203 SM00382 ATPases associated with a variety of cellular activities VS_2203 SM00464 Found in ATP-dependent protease La (LON) VS_2204 SM00382 ATPases associated with a variety of cellular activities VS_2204 SM00994 ClpX C4-type zinc finger VS_2204 SM01086 C-terminal, D2-small domain, of ClpB protein VS_2207 SM00387 Histidine kinase-like ATPases VS_2207 SM00388 His Kinase A (phosphoacceptor) domain VS_2208 SM00382 ATPases associated with a variety of cellular activities VS_2208 SM00448 cheY-homologous receiver domain VS_2215 SM00822 VS_2215 VS_2215 SM00825 Beta-ketoacyl synthase VS_2215 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VS_2216 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VS_2217 SM00825 Beta-ketoacyl synthase VS_2219 SM00474 3'-5' exonuclease VS_2226 SM00487 DEAD-like helicases superfamily VS_2226 SM00491 VS_2226 VS_2230 SM00836 DALR anticodon binding domain VS_2230 SM01016 Arginyl tRNA synthetase N terminal dom VS_2234 SM00899 VS_2234 VS_2236 SM00342 helix_turn_helix, arabinose operon control protein VS_2238 SM00382 ATPases associated with a variety of cellular activities VS_2240 SM00881 CoA binding domain VS_2243 SM00861 Transketolase, pyrimidine binding domain VS_2265 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VS_2269 SM00387 Histidine kinase-like ATPases VS_2270 SM00862 Transcriptional regulatory protein, C terminal VS_2274 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_2275 SM00938 Nitrogen regulatory protein P-II VS_2281 SM00244 prohibitin homologues VS_2283 SM00422 helix_turn_helix, mercury resistance VS_2286 SM00292 breast cancer carboxy-terminal domain VS_2286 SM00532 Ligase N family VS_2287 SM00771 ZipA, C-terminal domain (FtsZ-binding) VS_2305 SM01130 VS_2305 VS_2324 SM00479 VS_2324 VS_2329 SM00849 Metallo-beta-lactamase superfamily VS_2330 SM00257 Lysin motif VS_2333 SM00938 Nitrogen regulatory protein P-II VS_2335 SM00977 TilS substrate C-terminal domain VS_2337 SM00481 DNA polymerase alpha chain like domain VS_2343 SM00935 Outer membrane protein (OmpH-like) VS_2345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VS_2355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_2375 SM00862 Transcriptional regulatory protein, C terminal VS_2377 SM00642 Alpha-amylase domain VS_2379 SM00354 helix_turn _helix lactose operon repressor VS_2382 SM00382 ATPases associated with a variety of cellular activities VS_2382 SM00930 VS_2382 VS_2391 SM00028 Tetratricopeptide repeats VS_2392 SM00267 diguanylate cyclase VS_2394 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VS_2394 SM00475 5'-3' exonuclease VS_2401 SM00981 VS_2401 VS_2406 SM00861 Transketolase, pyrimidine binding domain VS_2416 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VS_2434 SM00028 Tetratricopeptide repeats VS_2444 SM00858 VS_2444 VS_2448 SM00342 helix_turn_helix, arabinose operon control protein VS_2454 SM00838 Elongation factor G C-terminus VS_2454 SM00889 Elongation factor G, domain IV VS_2456 SM00382 ATPases associated with a variety of cellular activities VS_2462 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VS_2463 SM01133 VS_2463 VS_2472 SM00052 Putative diguanylate phosphodiesterase VS_2472 SM00091 PAS domain VS_2472 SM00267 diguanylate cyclase VS_2476 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_2477 SM00028 Tetratricopeptide repeats VS_2478 SM00316 Ribosomal protein S1-like RNA-binding domain VS_2478 SM00322 K homology RNA-binding domain VS_2479 SM01387 VS_2479 VS_2483 SM00316 Ribosomal protein S1-like RNA-binding domain VS_2483 SM00322 K homology RNA-binding domain VS_2490 SM00382 ATPases associated with a variety of cellular activities VS_2492 SM01103 VS_2492 VS_2505 SM00091 PAS domain VS_2505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_2505 SM00387 Histidine kinase-like ATPases VS_2505 SM00388 His Kinase A (phosphoacceptor) domain VS_2505 SM00448 cheY-homologous receiver domain VS_2509 SM00382 ATPases associated with a variety of cellular activities VS_2510 SM00382 ATPases associated with a variety of cellular activities VS_2514 SM01068 Putative carbohydrate binding domain VS_2516 SM00382 ATPases associated with a variety of cellular activities VS_2520 SM00938 Nitrogen regulatory protein P-II VS_2526 SM00487 DEAD-like helicases superfamily VS_2526 SM00490 helicase superfamily c-terminal domain VS_2526 SM00847 Helicase associated domain (HA2) Add an annotation VS_2535 SM00382 ATPases associated with a variety of cellular activities VS_2537 SM00947 Carbonic anhydrase VS_2543 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_2543 SM00895 VS_2543 VS_2545 SM00644 VS_2545 VS_2559 SM00382 ATPases associated with a variety of cellular activities VS_2559 SM00962 SRP54-type protein, GTPase domain VS_2559 SM00963 SRP54-type protein, helical bundle domain VS_2561 SM01091 Transporter associated domain VS_2567 SM00829 Enoylreductase VS_2583 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VS_2585 SM00632 VS_2585 VS_2585 SM00642 Alpha-amylase domain VS_2586 SM00382 ATPases associated with a variety of cellular activities VS_2593 SM00642 Alpha-amylase domain VS_2596 SM00382 ATPases associated with a variety of cellular activities VS_2598 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VS_2598 SM00534 ATPase domain of DNA mismatch repair MUTS family VS_2600 SM00257 Lysin motif VS_2607 SM01192 VS_2607 VS_2607 SM01193 VS_2607 VS_2611 SM00954 Region found in RelA / SpoT proteins VS_2614 SM00073 Histidine Phosphotransfer domain VS_2614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_2614 SM00387 Histidine kinase-like ATPases VS_2614 SM00388 His Kinase A (phosphoacceptor) domain VS_2614 SM00448 cheY-homologous receiver domain VS_2619 SM00358 Double-stranded RNA binding motif VS_2619 SM00535 Ribonuclease III family VS_2621 SM00838 Elongation factor G C-terminus VS_2648 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_2651 SM00387 Histidine kinase-like ATPases VS_2652 SM00448 cheY-homologous receiver domain VS_2652 SM00862 Transcriptional regulatory protein, C terminal VS_2654 SM00861 Transketolase, pyrimidine binding domain VS_2656 SM00382 ATPases associated with a variety of cellular activities VS_2659 SM00855 Phosphoglycerate mutase family VS_2673 SM00731 SprT homologues. VS_2680 SM00732 Likely ribonuclease with RNase H fold. VS_2686 SM01152 VS_2686 VS_2689 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_2692 SM00478 endonuclease III VS_2692 SM00525 VS_2692 VS_2703 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_2703 SM01049 VS_2703 VS_2723 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_2735 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_2743 SM00563 Phosphate acyltransferases VS_2750 SM00382 ATPases associated with a variety of cellular activities VS_2752 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_2756 SM00382 ATPases associated with a variety of cellular activities VS_2762 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_2762 SM00924 MgtE intracellular N domain VS_2765 SM00382 ATPases associated with a variety of cellular activities VS_2782 SM00382 ATPases associated with a variety of cellular activities VS_2797 SM00563 Phosphate acyltransferases VS_2807 SM00662 RNA polymerases D VS_2808 SM00363 S4 RNA-binding domain VS_2808 SM01390 VS_2808 VS_2820 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VS_2821 SM01374 VS_2821 VS_2825 SM00322 K homology RNA-binding domain VS_2829 SM01382 VS_2829 VS_2829 SM01383 VS_2829 VS_2833 SM01403 VS_2833 VS_2835 SM00838 Elongation factor G C-terminus VS_2835 SM00889 Elongation factor G, domain IV VS_2843 SM00320 WD40 repeats VS_2850 SM00382 ATPases associated with a variety of cellular activities VS_2855 SM00100 Cyclic nucleotide-monophosphate binding domain VS_2855 SM00419 helix_turn_helix, cAMP Regulatory protein VS_2858 SM01150 VS_2858 VS_2863 SM00052 Putative diguanylate phosphodiesterase VS_2863 SM00267 diguanylate cyclase VS_2863 SM01049 VS_2863 VS_2873 SM00965 Secretin and TonB N terminus short domain VS_2888 SM00859 Semialdehyde dehydrogenase, NAD binding domain VS_2896 SM00919 Malic enzyme, NAD binding domain VS_2896 SM01274 VS_2896 VS_2898 SM00487 DEAD-like helicases superfamily VS_2898 SM00490 helicase superfamily c-terminal domain VS_2899 SM00354 helix_turn _helix lactose operon repressor VS_2902 SM00382 ATPases associated with a variety of cellular activities VS_2902 SM01086 C-terminal, D2-small domain, of ClpB protein VS_2916 SM00448 cheY-homologous receiver domain VS_2916 SM00862 Transcriptional regulatory protein, C terminal VS_2917 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_2917 SM00387 Histidine kinase-like ATPases VS_2917 SM00388 His Kinase A (phosphoacceptor) domain VS_2931 SM00421 helix_turn_helix, Lux Regulon VS_2931 SM00448 cheY-homologous receiver domain VS_2932 SM01091 Transporter associated domain VS_2938 SM00387 Histidine kinase-like ATPases VS_2938 SM00388 His Kinase A (phosphoacceptor) domain VS_2938 SM00448 cheY-homologous receiver domain VS_2941 SM00479 VS_2941 VS_2945 SM00878 Biotin carboxylase C-terminal domain VS_2949 SM00267 diguanylate cyclase VS_2950 SM00422 helix_turn_helix, mercury resistance VS_2951 SM00798 AICARFT/IMPCHase bienzyme VS_2951 SM00851 MGS-like domain VS_2952 SM01209 VS_2952 VS_2952 SM01210 VS_2952 VS_2954 SM00411 bacterial (prokaryotic) histone like domain VS_2958 SM00986 Uracil DNA glycosylase superfamily VS_2958 SM00987 UreE urease accessory protein, C-terminal domain VS_2962 SM00663 RNA polymerase I subunit A N-terminus VS_2968 SM00649 Ribosomal protein L11/L12 VS_2970 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VS_2970 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VS_2982 SM00155 Phospholipase D. Active site motifs. VS_2995 SM00360 RNA recognition motif VS_3009 SM00563 Phosphate acyltransferases VS_3017 SM00450 Rhodanese Homology Domain VS_3020 SM00382 ATPases associated with a variety of cellular activities VS_3021 SM00382 ATPases associated with a variety of cellular activities VS_3021 SM00962 SRP54-type protein, GTPase domain VS_3021 SM00963 SRP54-type protein, helical bundle domain VS_3033 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_3034 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VS_3035 SM00052 Putative diguanylate phosphodiesterase VS_3041 SM01144 VS_3041 VS_3042 SM00052 Putative diguanylate phosphodiesterase VS_3042 SM00267 diguanylate cyclase VS_3042 SM00897 FIST N domain VS_3042 SM01204 VS_3042 VS_3043 SM00052 Putative diguanylate phosphodiesterase VS_3043 SM00897 FIST N domain VS_3043 SM01204 VS_3043 VS_3050 SM01219 VS_3050 VS_3055 SM00028 Tetratricopeptide repeats VS_3071 SM00357 Cold shock protein domain VS_3071 SM00382 ATPases associated with a variety of cellular activities VS_3071 SM00959 Rho termination factor, N-terminal domain VS_3073 SM00487 DEAD-like helicases superfamily VS_3073 SM00490 helicase superfamily c-terminal domain VS_3077 SM00341 Helicase and RNase D C-terminal VS_3077 SM00487 DEAD-like helicases superfamily VS_3077 SM00490 helicase superfamily c-terminal domain VS_3077 SM00956 VS_3077 VS_3079 SM00342 helix_turn_helix, arabinose operon control protein VS_3093 SM00876 Biotin and Thiamin Synthesis associated domain VS_3120 SM01001 AIR carboxylase VS_3125 SM00257 Lysin motif VS_3142 SM00382 ATPases associated with a variety of cellular activities VS_3152 SM00382 ATPases associated with a variety of cellular activities VS_3160 SM00470 ParB-like nuclease domain VS_3163 SM01228 VS_3163 VS_II0002 SM00470 ParB-like nuclease domain VS_II0005 SM00382 ATPases associated with a variety of cellular activities VS_II0006 SM00052 Putative diguanylate phosphodiesterase VS_II0006 SM00267 diguanylate cyclase VS_II0009 SM00448 cheY-homologous receiver domain VS_II0010 SM00387 Histidine kinase-like ATPases VS_II0010 SM00388 His Kinase A (phosphoacceptor) domain VS_II0012 SM00421 helix_turn_helix, Lux Regulon VS_II0018 SM00342 helix_turn_helix, arabinose operon control protein VS_II0024 SM00344 helix_turn_helix ASNC type VS_II0026 SM00382 ATPases associated with a variety of cellular activities VS_II0029 SM00342 helix_turn_helix, arabinose operon control protein VS_II0035 SM01119 VS_II0035 VS_II0043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0043 SM00387 Histidine kinase-like ATPases VS_II0043 SM00388 His Kinase A (phosphoacceptor) domain VS_II0044 SM00448 cheY-homologous receiver domain VS_II0044 SM00862 Transcriptional regulatory protein, C terminal VS_II0045 SM00052 Putative diguanylate phosphodiesterase VS_II0045 SM00267 diguanylate cyclase VS_II0049 SM00344 helix_turn_helix ASNC type VS_II0061 SM00382 ATPases associated with a variety of cellular activities VS_II0062 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_II0072 SM01266 VS_II0072 VS_II0092 SM00849 Metallo-beta-lactamase superfamily VS_II0098 SM00354 helix_turn _helix lactose operon repressor VS_II0099 SM01266 VS_II0099 VS_II0107 SM00155 Phospholipase D. Active site motifs. VS_II0114 SM00420 helix_turn_helix, Deoxyribose operon repressor VS_II0114 SM01134 VS_II0114 VS_II0120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VS_II0137 SM00346 helix_turn_helix isocitrate lyase regulation VS_II0138 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_II0142 SM01007 Class II Aldolase and Adducin N-terminal domain VS_II0148 SM01060 VS_II0148 VS_II0153 SM00563 Phosphate acyltransferases VS_II0156 SM00267 diguanylate cyclase VS_II0157 SM00642 Alpha-amylase domain VS_II0163 SM00642 Alpha-amylase domain VS_II0167 SM00642 Alpha-amylase domain VS_II0168 SM00642 Alpha-amylase domain VS_II0171 SM00344 helix_turn_helix ASNC type VS_II0174 SM00671 Sel1-like repeats. VS_II0183 SM00421 helix_turn_helix, Lux Regulon VS_II0186 SM00642 Alpha-amylase domain VS_II0188 SM00382 ATPases associated with a variety of cellular activities VS_II0193 SM00267 diguanylate cyclase VS_II0194 SM00028 Tetratricopeptide repeats VS_II0198 SM00257 Lysin motif VS_II0200 SM00487 DEAD-like helicases superfamily VS_II0200 SM00490 helicase superfamily c-terminal domain VS_II0204 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II0204 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0208 SM00382 ATPases associated with a variety of cellular activities VS_II0209 SM00267 diguanylate cyclase VS_II0211 SM00028 Tetratricopeptide repeats VS_II0212 SM00327 von Willebrand factor (vWF) type A domain VS_II0216 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II0216 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0219 SM00382 ATPases associated with a variety of cellular activities VS_II0226 SM00342 helix_turn_helix, arabinose operon control protein VS_II0247 SM00382 ATPases associated with a variety of cellular activities VS_II0249 SM00052 Putative diguanylate phosphodiesterase VS_II0249 SM00267 diguanylate cyclase VS_II0249 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0250 SM00829 Enoylreductase VS_II0252 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_II0260 SM00387 Histidine kinase-like ATPases VS_II0260 SM00388 His Kinase A (phosphoacceptor) domain VS_II0260 SM00448 cheY-homologous receiver domain VS_II0271 SM00267 diguanylate cyclase VS_II0284 SM00382 ATPases associated with a variety of cellular activities VS_II0290 SM00729 Elongator protein 3, MiaB family, Radical SAM VS_II0293 SM00260 Two component signalling adaptor domain VS_II0293 SM00448 cheY-homologous receiver domain VS_II0295 SM00642 Alpha-amylase domain VS_II0296 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II0296 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0303 SM00052 Putative diguanylate phosphodiesterase VS_II0303 SM00267 diguanylate cyclase VS_II0320 SM00267 diguanylate cyclase VS_II0320 SM01079 VS_II0320 VS_II0321 SM00487 DEAD-like helicases superfamily VS_II0321 SM00490 helicase superfamily c-terminal domain VS_II0323 SM00530 Helix-turn-helix XRE-family like proteins VS_II0325 SM00267 diguanylate cyclase VS_II0326 SM00357 Cold shock protein domain VS_II0334 SM00342 helix_turn_helix, arabinose operon control protein VS_II0337 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_II0339 SM00344 helix_turn_helix ASNC type VS_II0346 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_II0348 SM00387 Histidine kinase-like ATPases VS_II0348 SM00388 His Kinase A (phosphoacceptor) domain VS_II0348 SM00448 cheY-homologous receiver domain VS_II0354 SM00465 GIY-YIG type nucleases (URI domain) VS_II0356 SM00387 Histidine kinase-like ATPases VS_II0356 SM00388 His Kinase A (phosphoacceptor) domain VS_II0356 SM00448 cheY-homologous receiver domain VS_II0401 SM00382 ATPases associated with a variety of cellular activities VS_II0403 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_II0403 SM00866 VS_II0403 VS_II0409 SM01350 VS_II0409 VS_II0411 SM00354 helix_turn _helix lactose operon repressor VS_II0421 SM00382 ATPases associated with a variety of cellular activities VS_II0422 SM00382 ATPases associated with a variety of cellular activities VS_II0423 SM00028 Tetratricopeptide repeats VS_II0428 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II0429 SM00481 DNA polymerase alpha chain like domain VS_II0437 SM00829 Enoylreductase VS_II0449 SM00028 Tetratricopeptide repeats VS_II0449 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_II0449 SM00267 diguanylate cyclase VS_II0463 SM00861 Transketolase, pyrimidine binding domain VS_II0482 SM00052 Putative diguanylate phosphodiesterase VS_II0482 SM00267 diguanylate cyclase VS_II0483 SM00450 Rhodanese Homology Domain VS_II0490 SM00852 Probable molybdopterin binding domain VS_II0494 SM01322 VS_II0494 VS_II0495 SM00357 Cold shock protein domain VS_II0498 SM00382 ATPases associated with a variety of cellular activities VS_II0500 SM00342 helix_turn_helix, arabinose operon control protein VS_II0500 SM00871 Bacterial transcription activator, effector binding domain VS_II0510 SM00382 ATPases associated with a variety of cellular activities VS_II0528 SM00342 helix_turn_helix, arabinose operon control protein VS_II0532 SM00062 Bacterial periplasmic substrate-binding proteins VS_II0532 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VS_II0534 SM00382 ATPases associated with a variety of cellular activities VS_II0536 SM00342 helix_turn_helix, arabinose operon control protein VS_II0540 SM00052 Putative diguanylate phosphodiesterase VS_II0546 SM00495 Chitin-binding domain type 3 VS_II0546 SM00636 VS_II0546 VS_II0547 SM00267 diguanylate cyclase VS_II0550 SM00936 Penicillin-binding protein 5, C-terminal domain VS_II0556 SM00829 Enoylreductase VS_II0563 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_II0563 SM00382 ATPases associated with a variety of cellular activities VS_II0567 SM00833 Cobalamin synthesis protein cobW C-terminal domain VS_II0568 SM00487 DEAD-like helicases superfamily VS_II0568 SM00490 helicase superfamily c-terminal domain VS_II0575 SM00448 cheY-homologous receiver domain VS_II0575 SM00862 Transcriptional regulatory protein, C terminal VS_II0576 SM00388 His Kinase A (phosphoacceptor) domain VS_II0580 SM00344 helix_turn_helix ASNC type VS_II0584 SM00822 VS_II0584 VS_II0589 SM00388 His Kinase A (phosphoacceptor) domain VS_II0590 SM00448 cheY-homologous receiver domain VS_II0590 SM00862 Transcriptional regulatory protein, C terminal VS_II0594 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II0598 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VS_II0601 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0601 SM00387 Histidine kinase-like ATPases VS_II0602 SM00421 helix_turn_helix, Lux Regulon VS_II0602 SM00448 cheY-homologous receiver domain VS_II0604 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_II0604 SM00866 VS_II0604 VS_II0606 SM00872 Alpha mannosidase, middle domain VS_II0620 SM00342 helix_turn_helix, arabinose operon control protein VS_II0622 SM00862 Transcriptional regulatory protein, C terminal VS_II0623 SM00862 Transcriptional regulatory protein, C terminal VS_II0631 SM00421 helix_turn_helix, Lux Regulon VS_II0640 SM00382 ATPases associated with a variety of cellular activities VS_II0641 SM00327 von Willebrand factor (vWF) type A domain VS_II0674 SM00448 cheY-homologous receiver domain VS_II0674 SM00862 Transcriptional regulatory protein, C terminal VS_II0675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0675 SM00387 Histidine kinase-like ATPases VS_II0675 SM00388 His Kinase A (phosphoacceptor) domain VS_II0691 SM00382 ATPases associated with a variety of cellular activities VS_II0698 SM00342 helix_turn_helix, arabinose operon control protein VS_II0699 SM00862 Transcriptional regulatory protein, C terminal VS_II0700 SM00862 Transcriptional regulatory protein, C terminal VS_II0714 SM00342 helix_turn_helix, arabinose operon control protein VS_II0718 SM00382 ATPases associated with a variety of cellular activities VS_II0719 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II0719 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II0725 SM00382 ATPases associated with a variety of cellular activities VS_II0727 SM00267 diguanylate cyclase VS_II0727 SM00448 cheY-homologous receiver domain VS_II0729 SM00267 diguanylate cyclase VS_II0732 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VS_II0732 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VS_II0735 SM00387 Histidine kinase-like ATPases VS_II0735 SM00388 His Kinase A (phosphoacceptor) domain VS_II0736 SM00448 cheY-homologous receiver domain VS_II0736 SM00862 Transcriptional regulatory protein, C terminal VS_II0741 SM00267 diguanylate cyclase VS_II0748 SM00881 CoA binding domain VS_II0754 SM00796 Allophanate hydrolase subunit 1 VS_II0755 SM00797 Allophanate hydrolase subunit 2 VS_II0758 SM00382 ATPases associated with a variety of cellular activities VS_II0761 SM00052 Putative diguanylate phosphodiesterase VS_II0761 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VS_II0761 SM00267 diguanylate cyclase VS_II0764 SM00271 DnaJ molecular chaperone homology domain VS_II0775 SM00782 PhnA Zinc-Ribbon VS_II0776 SM00487 DEAD-like helicases superfamily VS_II0776 SM00490 helicase superfamily c-terminal domain VS_II0787 SM00116 Domain in cystathionine beta-synthase and other proteins. VS_II0788 SM00867 YceI-like domain VS_II0794 SM00052 Putative diguanylate phosphodiesterase VS_II0799 SM00487 DEAD-like helicases superfamily VS_II0799 SM00490 helicase superfamily c-terminal domain VS_II0803 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II0805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II0810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VS_II0810 SM00267 diguanylate cyclase VS_II0813 SM00530 Helix-turn-helix XRE-family like proteins VS_II0815 SM00020 Trypsin-like serine protease VS_II0817 SM00530 Helix-turn-helix XRE-family like proteins VS_II0842 SM00342 helix_turn_helix, arabinose operon control protein VS_II0844 SM00388 His Kinase A (phosphoacceptor) domain VS_II0845 SM00448 cheY-homologous receiver domain VS_II0845 SM00862 Transcriptional regulatory protein, C terminal VS_II0851 SM00448 cheY-homologous receiver domain VS_II0859 SM00448 cheY-homologous receiver domain VS_II0861 SM00382 ATPases associated with a variety of cellular activities VS_II0862 SM00382 ATPases associated with a variety of cellular activities VS_II0864 SM00387 Histidine kinase-like ATPases VS_II0864 SM00388 His Kinase A (phosphoacceptor) domain VS_II0864 SM00448 cheY-homologous receiver domain VS_II0873 SM00327 von Willebrand factor (vWF) type A domain VS_II0874 SM00327 von Willebrand factor (vWF) type A domain VS_II0878 SM00028 Tetratricopeptide repeats VS_II0883 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. VS_II0890 SM00052 Putative diguanylate phosphodiesterase VS_II0890 SM00267 diguanylate cyclase VS_II0914 SM00382 ATPases associated with a variety of cellular activities VS_II0921 SM00357 Cold shock protein domain VS_II0923 SM00862 Transcriptional regulatory protein, C terminal VS_II0932 SM00382 ATPases associated with a variety of cellular activities VS_II0939 SM00862 Transcriptional regulatory protein, C terminal VS_II0941 SM00382 ATPases associated with a variety of cellular activities VS_II0945 SM00354 helix_turn _helix lactose operon repressor VS_II0947 SM00052 Putative diguanylate phosphodiesterase VS_II0948 SM00244 prohibitin homologues VS_II0988 SM00240 Forkhead associated domain VS_II0992 SM00344 helix_turn_helix ASNC type VS_II0999 SM00220 Serine/Threonine protein kinases, catalytic domain VS_II1006 SM00382 ATPases associated with a variety of cellular activities VS_II1006 SM01086 C-terminal, D2-small domain, of ClpB protein VS_II1007 SM00382 ATPases associated with a variety of cellular activities VS_II1026 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VS_II1030 SM00220 Serine/Threonine protein kinases, catalytic domain VS_II1030 SM00331 Sigma factor PP2C-like phosphatases VS_II1030 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VS_II1031 SM00354 helix_turn _helix lactose operon repressor VS_II1035 SM00342 helix_turn_helix, arabinose operon control protein VS_II1042 SM00448 cheY-homologous receiver domain VS_II1042 SM00862 Transcriptional regulatory protein, C terminal VS_II1043 SM00388 His Kinase A (phosphoacceptor) domain VS_II1048 SM00507 HNH nucleases VS_II1051 SM00990 VS_II1051 VS_II1053 SM00073 Histidine Phosphotransfer domain VS_II1053 SM00387 Histidine kinase-like ATPases VS_II1053 SM00388 His Kinase A (phosphoacceptor) domain VS_II1053 SM00448 cheY-homologous receiver domain VS_II1055 SM00851 MGS-like domain VS_II1056 SM00091 PAS domain VS_II1056 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1057 SM00344 helix_turn_helix ASNC type VS_II1062 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VS_II1065 SM00062 Bacterial periplasmic substrate-binding proteins VS_II1065 SM00387 Histidine kinase-like ATPases VS_II1065 SM00388 His Kinase A (phosphoacceptor) domain VS_II1065 SM00448 cheY-homologous receiver domain VS_II1066 SM00448 cheY-homologous receiver domain VS_II1066 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II1067 SM00382 ATPases associated with a variety of cellular activities VS_II1084 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1084 SM01358 VS_II1084 VS_II1089 SM00382 ATPases associated with a variety of cellular activities VS_II1093 SM00342 helix_turn_helix, arabinose operon control protein VS_II1110 SM01240 VS_II1110 VS_II1112 SM00448 cheY-homologous receiver domain VS_II1120 SM00829 Enoylreductase VS_II1123 SM00382 ATPases associated with a variety of cellular activities VS_II1137 SM00487 DEAD-like helicases superfamily VS_II1137 SM00490 helicase superfamily c-terminal domain VS_II1138 SM00316 Ribosomal protein S1-like RNA-binding domain VS_II1138 SM00357 Cold shock protein domain VS_II1138 SM00955 VS_II1138 VS_II1139 SM00342 helix_turn_helix, arabinose operon control protein VS_II1158 SM00487 DEAD-like helicases superfamily VS_II1158 SM00490 helicase superfamily c-terminal domain VS_II1160 SM00479 VS_II1160 VS_II1163 SM00487 DEAD-like helicases superfamily VS_II1163 SM00490 helicase superfamily c-terminal domain VS_II1170 SM00421 helix_turn_helix, Lux Regulon VS_II1179 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II1181 SM00387 Histidine kinase-like ATPases VS_II1181 SM00388 His Kinase A (phosphoacceptor) domain VS_II1182 SM00448 cheY-homologous receiver domain VS_II1182 SM00862 Transcriptional regulatory protein, C terminal VS_II1184 SM00052 Putative diguanylate phosphodiesterase VS_II1184 SM00267 diguanylate cyclase VS_II1186 SM00052 Putative diguanylate phosphodiesterase VS_II1187 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_II1188 SM00382 ATPases associated with a variety of cellular activities VS_II1201 SM00342 helix_turn_helix, arabinose operon control protein VS_II1209 SM00849 Metallo-beta-lactamase superfamily VS_II1210 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VS_II1215 SM00382 ATPases associated with a variety of cellular activities VS_II1254 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VS_II1260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1261 SM00014 Acid phosphatase homologues VS_II1268 SM00382 ATPases associated with a variety of cellular activities VS_II1285 SM00382 ATPases associated with a variety of cellular activities VS_II1288 SM00382 ATPases associated with a variety of cellular activities VS_II1288 SM00448 cheY-homologous receiver domain VS_II1289 SM00387 Histidine kinase-like ATPases VS_II1289 SM00388 His Kinase A (phosphoacceptor) domain VS_II1290 SM00342 helix_turn_helix, arabinose operon control protein VS_II1290 SM00871 Bacterial transcription activator, effector binding domain VS_II1294 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VS_II1298 SM00642 Alpha-amylase domain VS_II1300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1300 SM01049 VS_II1300 VS_II1303 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1303 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1306 SM00345 helix_turn_helix gluconate operon transcriptional repressor VS_II1308 SM00422 helix_turn_helix, mercury resistance VS_II1310 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_II1312 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1319 SM00342 helix_turn_helix, arabinose operon control protein VS_II1327 SM00829 Enoylreductase VS_II1336 SM00382 ATPases associated with a variety of cellular activities VS_II1337 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1337 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VS_II1340 SM00530 Helix-turn-helix XRE-family like proteins VS_II1344 SM00903 Flavin reductase like domain VS_II1351 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VS_II1359 SM00347 helix_turn_helix multiple antibiotic resistance protein VS_II1368 SM00342 helix_turn_helix, arabinose operon control protein VS_II1372 SM00587 ZnF_C4 abd HLH domain containing kinases domain VS_II1377 SM00382 ATPases associated with a variety of cellular activities VS_II1383 SM00354 helix_turn _helix lactose operon repressor VS_II1387 SM00382 ATPases associated with a variety of cellular activities VS_II1392 SM00354 helix_turn _helix lactose operon repressor VS_II1402 SM00342 helix_turn_helix, arabinose operon control protein VS_II1402 SM00871 Bacterial transcription activator, effector binding domain VS_II1404 SM00450 Rhodanese Homology Domain VS_II1409 SM00267 diguanylate cyclase VS_II1414 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VS_II1414 SM00495 Chitin-binding domain type 3 VS_II1414 SM00636 VS_II1414 VS_II1420 SM00342 helix_turn_helix, arabinose operon control protein VS_II1431 SM00342 helix_turn_helix, arabinose operon control protein VS_II1431 SM00478 endonuclease III VS_II1431 SM01009 AlkA N-terminal domain VS_II1439 SM00849 Metallo-beta-lactamase superfamily VS_II1463 SM00360 RNA recognition motif VS_II1474 SM00387 Histidine kinase-like ATPases VS_II1474 SM00388 His Kinase A (phosphoacceptor) domain VS_II1475 SM00448 cheY-homologous receiver domain VS_II1475 SM00862 Transcriptional regulatory protein, C terminal VS_II1487 SM00448 cheY-homologous receiver domain VS_II1487 SM00850 LytTr DNA-binding domain VS_II1488 SM00387 Histidine kinase-like ATPases VS_II1492 SM00382 ATPases associated with a variety of cellular activities VS_II1500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VS_II1524 SM00387 Histidine kinase-like ATPases VS_II1524 SM00388 His Kinase A (phosphoacceptor) domain VS_II1524 SM00448 cheY-homologous receiver domain VS_II1528 SM00382 ATPases associated with a variety of cellular activities VS_II1529 SM00382 ATPases associated with a variety of cellular activities