locus-tag class description VV93_v1c00010 PF00308 Bacterial dnaA protein VV93_v1c00010 PF11638 DnaA N-terminal domain VV93_v1c00010 PF08299 Bacterial dnaA protein helix-turn-helix VV93_v1c00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VV93_v1c00020 PF02767 DNA polymerase III beta subunit, central domain VV93_v1c00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VV93_v1c00030 PF02463 RecF/RecN/SMC N terminal domain VV93_v1c00040 PF01751 Toprim domain VV93_v1c00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c00040 PF18053 DNA gyrase B subunit insert domain VV93_v1c00040 PF00986 DNA gyrase B subunit, carboxyl terminus VV93_v1c00040 PF00204 DNA gyrase B VV93_v1c00050 PF00011 Hsp20/alpha crystallin family VV93_v1c00060 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c00060 PF00563 EAL domain VV93_v1c00060 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c00070 PF00155 Aminotransferase class I and II VV93_v1c00090 PF02092 Glycyl-tRNA synthetase beta subunit VV93_v1c00090 PF05746 DALR anticodon binding domain VV93_v1c00100 PF02091 Glycyl-tRNA synthetase alpha subunit VV93_v1c00110 PF01169 Uncharacterized protein family UPF0016 VV93_v1c00130 PF01206 Sulfurtransferase TusA VV93_v1c00150 PF03466 LysR substrate binding domain VV93_v1c00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c00160 PF00107 Zinc-binding dehydrogenase VV93_v1c00160 PF08240 Alcohol dehydrogenase GroES-like domain VV93_v1c00170 PF02803 Thiolase, C-terminal domain VV93_v1c00170 PF00108 Thiolase, N-terminal domain VV93_v1c00180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV93_v1c00180 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c00180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV93_v1c00190 PF09186 Domain of unknown function (DUF1949) VV93_v1c00190 PF01205 Uncharacterized protein family UPF0029 VV93_v1c00200 PF02386 Cation transport protein VV93_v1c00210 PF12724 Flavodoxin domain VV93_v1c00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c00300 PF03466 LysR substrate binding domain VV93_v1c00310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VV93_v1c00310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VV93_v1c00320 PF04380 Membrane fusogenic activity VV93_v1c00330 PF00873 AcrB/AcrD/AcrF family VV93_v1c00340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c00350 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c00360 PF13361 UvrD-like helicase C-terminal domain VV93_v1c00360 PF00580 UvrD/REP helicase N-terminal domain VV93_v1c00370 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV93_v1c00380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c00380 PF00005 ABC transporter VV93_v1c00390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c00410 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c00410 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c00480 PF03793 PASTA domain VV93_v1c00480 PF00069 Protein kinase domain VV93_v1c00510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV93_v1c00510 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c00520 PF00920 Dehydratase family VV93_v1c00530 PF01202 Shikimate kinase VV93_v1c00540 PF02447 GntP family permease VV93_v1c00550 PF01081 KDPG and KHG aldolase VV93_v1c00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_v1c00590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VV93_v1c00600 PF01432 Peptidase family M3 VV93_v1c00610 PF01037 Lrp/AsnC ligand binding domain VV93_v1c00620 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c00620 PF00563 EAL domain VV93_v1c00620 PF08448 PAS fold VV93_v1c00630 PF04445 Putative SAM-dependent methyltransferase VV93_v1c00650 PF00892 EamA-like transporter family VV93_v1c00660 PF00582 Universal stress protein family VV93_v1c00670 PF00210 Ferritin-like domain VV93_v1c00680 PF10625 Universal stress protein B (UspB) VV93_v1c00710 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VV93_v1c00720 PF02602 Uroporphyrinogen-III synthase HemD VV93_v1c00730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VV93_v1c00730 PF03900 Porphobilinogen deaminase, C-terminal domain VV93_v1c00740 PF12633 Adenylate cyclase NT domain VV93_v1c00740 PF01295 Adenylate cyclase, class-I VV93_v1c00750 PF01491 Frataxin-like domain VV93_v1c00760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV93_v1c00760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VV93_v1c00770 PF01678 Diaminopimelate epimerase VV93_v1c00790 PF00589 Phage integrase family VV93_v1c00790 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c00800 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c00810 PF10442 FIST C domain VV93_v1c00810 PF08495 FIST N domain VV93_v1c00810 PF00563 EAL domain VV93_v1c00810 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c00860 PF12146 Serine aminopeptidase, S33 VV93_v1c00870 PF01810 LysE type translocator VV93_v1c00880 PF00563 EAL domain VV93_v1c00880 PF08668 HDOD domain VV93_v1c00890 PF01022 Bacterial regulatory protein, arsR family VV93_v1c00900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_v1c00900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_v1c00980 PF01914 MarC family integral membrane protein VV93_v1c01010 PF00448 SRP54-type protein, GTPase domain VV93_v1c01010 PF02881 SRP54-type protein, helical bundle domain VV93_v1c01020 PF00005 ABC transporter VV93_v1c01030 PF18075 FtsX extracellular domain VV93_v1c01040 PF04542 Sigma-70 region 2 VV93_v1c01040 PF04545 Sigma-70, region 4 VV93_v1c01040 PF00140 Sigma-70 factor, region 1.2 VV93_v1c01050 PF00581 Rhodanese-like domain VV93_v1c01060 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VV93_v1c01060 PF01694 Rhomboid family VV93_v1c01070 PF03748 Flagellar basal body-associated protein FliL VV93_v1c01080 PF04345 Chorismate lyase VV93_v1c01090 PF01040 UbiA prenyltransferase family VV93_v1c01100 PF01553 Acyltransferase VV93_v1c01110 PF00717 Peptidase S24-like VV93_v1c01110 PF01726 LexA DNA binding domain VV93_v1c01130 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c01130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_v1c01140 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c01160 PF05958 tRNA (Uracil-5-)-methyltransferase VV93_v1c01220 PF13411 MerR HTH family regulatory protein VV93_v1c01260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c01260 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c01300 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c01300 PF00589 Phage integrase family VV93_v1c01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c01310 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c01310 PF09308 LuxQ, periplasmic VV93_v1c01310 PF00072 Response regulator receiver domain VV93_v1c01400 PF13358 DDE superfamily endonuclease VV93_v1c01410 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV93_v1c01410 PF00753 Metallo-beta-lactamase superfamily VV93_v1c01440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c01460 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c01470 PF02368 Bacterial Ig-like domain (group 2) VV93_v1c01470 PF11999 Protein of unknown function (DUF3494) VV93_v1c01490 PF13737 Transposase DDE domain VV93_v1c01510 PF10544 T5orf172 domain VV93_v1c01540 PF00593 TonB dependent receptor VV93_v1c01540 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c01560 PF01177 Asp/Glu/Hydantoin racemase VV93_v1c01630 PF02646 RmuC family VV93_v1c01640 PF01209 ubiE/COQ5 methyltransferase family VV93_v1c01650 PF02036 SCP-2 sterol transfer family VV93_v1c01660 PF03109 ABC1 family VV93_v1c01670 PF02416 mttA/Hcf106 family VV93_v1c01680 PF02416 mttA/Hcf106 family VV93_v1c01690 PF00902 Sec-independent protein translocase protein (TatC) VV93_v1c01710 PF01026 TatD related DNase VV93_v1c01720 PF00490 Delta-aminolevulinic acid dehydratase VV93_v1c01730 PF01367 5'-3' exonuclease, C-terminal SAM fold VV93_v1c01730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV93_v1c01730 PF00476 DNA polymerase family A VV93_v1c01730 PF01612 3'-5' exonuclease VV93_v1c01740 PF01926 50S ribosome-binding GTPase VV93_v1c01750 PF00034 Cytochrome c VV93_v1c01770 PF04220 Der GTPase activator (YihI) VV93_v1c01780 PF10675 Protein of unknown function (DUF2489) VV93_v1c01790 PF06969 HemN C-terminal domain VV93_v1c01790 PF04055 Radical SAM superfamily VV93_v1c01800 PF00563 EAL domain VV93_v1c01800 PF13188 PAS domain VV93_v1c01800 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c01800 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c01810 PF00158 Sigma-54 interaction domain VV93_v1c01810 PF00072 Response regulator receiver domain VV93_v1c01810 PF02954 Bacterial regulatory protein, Fis family VV93_v1c01820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c01820 PF00989 PAS fold VV93_v1c01820 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c01840 PF03951 Glutamine synthetase, beta-Grasp domain VV93_v1c01840 PF00120 Glutamine synthetase, catalytic domain VV93_v1c01880 PF03631 Virulence factor BrkB VV93_v1c01890 PF02580 D-Tyr-tRNA(Tyr) deacylase VV93_v1c01900 PF00583 Acetyltransferase (GNAT) family VV93_v1c01900 PF09500 Putative thioesterase (yiiD_Cterm) VV93_v1c01920 PF01293 Phosphoenolpyruvate carboxykinase VV93_v1c01930 PF01430 Hsp33 protein VV93_v1c01940 PF01479 S4 domain VV93_v1c01950 PF11356 Type II secretion system protein C VV93_v1c01960 PF03958 Bacterial type II/III secretion system short domain VV93_v1c01960 PF00263 Bacterial type II and III secretion system protein VV93_v1c01970 PF00437 Type II/IV secretion system protein VV93_v1c01980 PF00482 Type II secretion system (T2SS), protein F VV93_v1c01990 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c01990 PF08334 Type II secretion system (T2SS), protein G VV93_v1c02000 PF12019 Type II transport protein GspH VV93_v1c02010 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c02010 PF02501 Type II secretion system (T2SS), protein I VV93_v1c02020 PF11612 Type II secretion system (T2SS), protein J VV93_v1c02020 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c02030 PF03934 Type II secretion system (T2SS), protein K VV93_v1c02040 PF05134 Type II secretion system (T2SS), protein L VV93_v1c02040 PF12693 GspL periplasmic domain VV93_v1c02050 PF04612 Type II secretion system (T2SS), protein M VV93_v1c02060 PF01203 Type II secretion system (T2SS), protein N VV93_v1c02070 PF00459 Inositol monophosphatase family VV93_v1c02080 PF00293 NUDIX domain VV93_v1c02090 PF01106 NifU-like domain VV93_v1c02090 PF01521 Iron-sulphur cluster biosynthesis VV93_v1c02100 PF00156 Phosphoribosyl transferase domain VV93_v1c02110 PF00561 alpha/beta hydrolase fold VV93_v1c02130 PF00575 S1 RNA binding domain VV93_v1c02130 PF09371 Tex-like protein N-terminal domain VV93_v1c02130 PF16921 Tex protein YqgF-like domain VV93_v1c02130 PF17674 HHH domain VV93_v1c02140 PF03449 Transcription elongation factor, N-terminal VV93_v1c02140 PF01272 Transcription elongation factor, GreA/GreB, C-term VV93_v1c02150 PF00072 Response regulator receiver domain VV93_v1c02150 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c02160 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c02160 PF00672 HAMP domain VV93_v1c02160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c02170 PF00860 Permease family VV93_v1c02180 PF17191 RecG wedge domain VV93_v1c02180 PF00271 Helicase conserved C-terminal domain VV93_v1c02180 PF00270 DEAD/DEAH box helicase VV93_v1c02190 PF12105 SpoU, rRNA methylase, C-terminal VV93_v1c02190 PF00588 SpoU rRNA Methylase family VV93_v1c02200 PF02824 TGS domain VV93_v1c02200 PF13291 ACT domain VV93_v1c02200 PF04607 Region found in RelA / SpoT proteins VV93_v1c02210 PF01192 RNA polymerase Rpb6 VV93_v1c02220 PF00625 Guanylate kinase VV93_v1c02250 PF02472 Biopolymer transport protein ExbD/TolR VV93_v1c02260 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c02270 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c02290 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c02290 PF00593 TonB dependent receptor VV93_v1c02300 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c02310 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c02310 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c02320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c02330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c02330 PF00005 ABC transporter VV93_v1c02340 PF00005 ABC transporter VV93_v1c02340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c02380 PF00892 EamA-like transporter family VV93_v1c02410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c02410 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c02530 PF01555 DNA methylase VV93_v1c02580 PF07057 DNA helicase TraI VV93_v1c02580 PF08751 TrwC relaxase VV93_v1c02580 PF18340 DNA relaxase TraI 2B/2B-like domain VV93_v1c02580 PF18272 single-stranded DNA binding TraI N-terminal subdomain VV93_v1c02700 PF08340 Domain of unknown function (DUF1732) VV93_v1c02700 PF03755 YicC-like family, N-terminal region VV93_v1c02710 PF01138 3' exoribonuclease family, domain 1 VV93_v1c02710 PF03725 3' exoribonuclease family, domain 2 VV93_v1c02720 PF00156 Phosphoribosyl transferase domain VV93_v1c02730 PF03279 Bacterial lipid A biosynthesis acyltransferase VV93_v1c02740 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c02750 PF04127 DNA / pantothenate metabolism flavoprotein VV93_v1c02750 PF02441 Flavoprotein VV93_v1c02760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c02760 PF17200 Single Cache domain 2 VV93_v1c02760 PF00672 HAMP domain VV93_v1c02770 PF04002 RadC-like JAB domain VV93_v1c02780 PF00830 Ribosomal L28 family VV93_v1c02790 PF00471 Ribosomal protein L33 VV93_v1c02810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VV93_v1c02810 PF06827 Zinc finger found in FPG and IleRS VV93_v1c02810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VV93_v1c02830 PF01467 Cytidylyltransferase-like VV93_v1c02840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_v1c02850 PF00535 Glycosyl transferase family 2 VV93_v1c02860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_v1c02870 PF01219 Prokaryotic diacylglycerol kinase VV93_v1c02890 PF11893 Domain of unknown function (DUF3413) VV93_v1c02890 PF00884 Sulfatase VV93_v1c02900 PF16363 GDP-mannose 4,6 dehydratase VV93_v1c02910 PF00483 Nucleotidyl transferase VV93_v1c02920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_v1c02930 PF00793 DAHP synthetase I family VV93_v1c02950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_v1c02950 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV93_v1c02950 PF02142 MGS-like domain VV93_v1c02970 PF00535 Glycosyl transferase family 2 VV93_v1c02980 PF13439 Glycosyltransferase Family 4 VV93_v1c02980 PF00534 Glycosyl transferases group 1 VV93_v1c02990 PF02719 Polysaccharide biosynthesis protein VV93_v1c03000 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_v1c03010 PF02350 UDP-N-acetylglucosamine 2-epimerase VV93_v1c03020 PF03102 NeuB family VV93_v1c03020 PF08666 SAF domain VV93_v1c03040 PF00483 Nucleotidyl transferase VV93_v1c03060 PF02348 Cytidylyltransferase VV93_v1c03100 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VV93_v1c03110 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_v1c03120 PF03279 Bacterial lipid A biosynthesis acyltransferase VV93_v1c03130 PF01370 NAD dependent epimerase/dehydratase family VV93_v1c03140 PF06082 Exopolysaccharide biosynthesis protein YbjH VV93_v1c03160 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VV93_v1c03200 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV93_v1c03200 PF10531 SLBB domain VV93_v1c03200 PF02563 Polysaccharide biosynthesis/export protein VV93_v1c03220 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV93_v1c03230 PF02706 Chain length determinant protein VV93_v1c03230 PF13807 G-rich domain on putative tyrosine kinase VV93_v1c03230 PF13614 AAA domain VV93_v1c03240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV93_v1c03240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV93_v1c03240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VV93_v1c03250 PF01370 NAD dependent epimerase/dehydratase family VV93_v1c03270 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c03300 PF08485 Polysaccharide biosynthesis protein C-terminal VV93_v1c03300 PF02719 Polysaccharide biosynthesis protein VV93_v1c03310 PF04321 RmlD substrate binding domain VV93_v1c03320 PF02350 UDP-N-acetylglucosamine 2-epimerase VV93_v1c03330 PF13477 Glycosyl transferase 4-like VV93_v1c03330 PF00534 Glycosyl transferases group 1 VV93_v1c03340 PF02397 Bacterial sugar transferase VV93_v1c03350 PF14602 Hexapeptide repeat of succinyl-transferase VV93_v1c03350 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c03350 PF17836 PglD N-terminal domain VV93_v1c03360 PF01575 MaoC like domain VV93_v1c03370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_v1c03380 PF02719 Polysaccharide biosynthesis protein VV93_v1c03390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV93_v1c03390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV93_v1c03390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VV93_v1c03420 PF10996 Beta-Casp domain VV93_v1c03420 PF00753 Metallo-beta-lactamase superfamily VV93_v1c03420 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VV93_v1c03440 PF13322 Domain of unknown function (DUF4092) VV93_v1c03440 PF17291 N-terminal domain of M60-like peptidases VV93_v1c03440 PF13402 Peptidase M60, enhancin and enhancin-like VV93_v1c03450 PF00338 Ribosomal protein S10p/S20e VV93_v1c03460 PF00297 Ribosomal protein L3 VV93_v1c03470 PF00573 Ribosomal protein L4/L1 family VV93_v1c03480 PF00276 Ribosomal protein L23 VV93_v1c03490 PF03947 Ribosomal Proteins L2, C-terminal domain VV93_v1c03490 PF00181 Ribosomal Proteins L2, RNA binding domain VV93_v1c03500 PF00203 Ribosomal protein S19 VV93_v1c03510 PF00237 Ribosomal protein L22p/L17e VV93_v1c03520 PF07650 KH domain VV93_v1c03520 PF00189 Ribosomal protein S3, C-terminal domain VV93_v1c03530 PF00252 Ribosomal protein L16p/L10e VV93_v1c03540 PF00831 Ribosomal L29 protein VV93_v1c03550 PF00366 Ribosomal protein S17 VV93_v1c03560 PF00238 Ribosomal protein L14p/L23e VV93_v1c03570 PF00467 KOW motif VV93_v1c03570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VV93_v1c03580 PF00281 Ribosomal protein L5 VV93_v1c03580 PF00673 ribosomal L5P family C-terminus VV93_v1c03590 PF00253 Ribosomal protein S14p/S29e VV93_v1c03600 PF00410 Ribosomal protein S8 VV93_v1c03610 PF00347 Ribosomal protein L6 VV93_v1c03620 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VV93_v1c03630 PF03719 Ribosomal protein S5, C-terminal domain VV93_v1c03630 PF00333 Ribosomal protein S5, N-terminal domain VV93_v1c03640 PF00327 Ribosomal protein L30p/L7e VV93_v1c03650 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VV93_v1c03660 PF00344 SecY translocase VV93_v1c03670 PF00444 Ribosomal protein L36 VV93_v1c03680 PF00416 Ribosomal protein S13/S18 VV93_v1c03690 PF00411 Ribosomal protein S11 VV93_v1c03700 PF00163 Ribosomal protein S4/S9 N-terminal domain VV93_v1c03700 PF01479 S4 domain VV93_v1c03710 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VV93_v1c03710 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VV93_v1c03710 PF01000 RNA polymerase Rpb3/RpoA insert domain VV93_v1c03720 PF01196 Ribosomal protein L17 VV93_v1c03740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV93_v1c03740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c03750 PF04225 Opacity-associated protein A LysM-like domain VV93_v1c03750 PF08525 Opacity-associated protein A N-terminal motif VV93_v1c03770 PF13673 Acetyltransferase (GNAT) domain VV93_v1c03790 PF00149 Calcineurin-like phosphoesterase VV93_v1c03790 PF02872 5'-nucleotidase, C-terminal domain VV93_v1c03800 PF14824 Sirohaem biosynthesis protein central VV93_v1c03800 PF10414 Sirohaem synthase dimerisation region VV93_v1c03800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_v1c03810 PF01507 Phosphoadenosine phosphosulfate reductase family VV93_v1c03820 PF00009 Elongation factor Tu GTP binding domain VV93_v1c03830 PF03600 Citrate transporter VV93_v1c03830 PF02080 TrkA-C domain VV93_v1c03890 PF02687 FtsX-like permease family VV93_v1c03890 PF12704 MacB-like periplasmic core domain VV93_v1c03890 PF00005 ABC transporter VV93_v1c03920 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VV93_v1c03940 PF01625 Peptide methionine sulfoxide reductase VV93_v1c03950 PF07244 Surface antigen variable number repeat VV93_v1c03950 PF17243 POTRA domain TamA domain 1 VV93_v1c03950 PF01103 Surface antigen VV93_v1c03960 PF04357 TamB, inner membrane protein subunit of TAM complex VV93_v1c03970 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VV93_v1c03990 PF00719 Inorganic pyrophosphatase VV93_v1c04000 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VV93_v1c04010 PF08245 Mur ligase middle domain VV93_v1c04010 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c04010 PF01225 Mur ligase family, catalytic domain VV93_v1c04020 PF02441 Flavoprotein VV93_v1c04040 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c04050 PF00005 ABC transporter VV93_v1c04060 PF04751 Protein of unknown function (DUF615) VV93_v1c04110 PF00571 CBS domain VV93_v1c04110 PF03448 MgtE intracellular N domain VV93_v1c04110 PF01769 Divalent cation transporter VV93_v1c04120 PF00381 PTS HPr component phosphorylation site VV93_v1c04130 PF03668 P-loop ATPase protein family VV93_v1c04140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c04150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV93_v1c04160 PF00309 Sigma-54 factor, Activator interacting domain (AID) VV93_v1c04160 PF04963 Sigma-54 factor, core binding domain VV93_v1c04160 PF04552 Sigma-54, DNA binding domain VV93_v1c04170 PF00005 ABC transporter VV93_v1c04170 PF12399 Branched-chain amino acid ATP-binding cassette transporter VV93_v1c04180 PF03968 OstA-like protein VV93_v1c04210 PF01380 SIS domain VV93_v1c04210 PF00571 CBS domain VV93_v1c04220 PF01699 Sodium/calcium exchanger protein VV93_v1c04230 PF00005 ABC transporter VV93_v1c04240 PF02405 Permease MlaE VV93_v1c04250 PF02470 MlaD protein VV93_v1c04260 PF05494 MlaC protein VV93_v1c04280 PF01722 BolA-like protein VV93_v1c04290 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV93_v1c04300 PF01553 Acyltransferase VV93_v1c04310 PF00582 Universal stress protein family VV93_v1c04330 PF16868 NMT1-like family VV93_v1c04340 PF01316 Arginine repressor, DNA binding domain VV93_v1c04340 PF02863 Arginine repressor, C-terminal domain VV93_v1c04350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VV93_v1c04350 PF00056 lactate/malate dehydrogenase, NAD binding domain VV93_v1c04360 PF00348 Polyprenyl synthetase VV93_v1c04370 PF00829 Ribosomal prokaryotic L21 protein VV93_v1c04380 PF01016 Ribosomal L27 protein VV93_v1c04390 PF01926 50S ribosome-binding GTPase VV93_v1c04390 PF01018 GTP1/OBG VV93_v1c04400 PF06738 Putative threonine/serine exporter VV93_v1c04410 PF12821 Threonine/Serine exporter, ThrE VV93_v1c04420 PF00186 Dihydrofolate reductase VV93_v1c04430 PF00149 Calcineurin-like phosphoesterase VV93_v1c04440 PF04379 ApaG domain VV93_v1c04450 PF00398 Ribosomal RNA adenine dimethylase VV93_v1c04460 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VV93_v1c04470 PF09312 SurA N-terminal domain VV93_v1c04470 PF00639 PPIC-type PPIASE domain VV93_v1c04480 PF04453 LPS transport system D VV93_v1c04480 PF03968 OstA-like protein VV93_v1c04490 PF05099 Tellurite resistance protein TerB VV93_v1c04490 PF00226 DnaJ domain VV93_v1c04520 PF00694 Aconitase C-terminal domain VV93_v1c04530 PF00330 Aconitase family (aconitate hydratase) VV93_v1c04540 PF00180 Isocitrate/isopropylmalate dehydrogenase VV93_v1c04550 PF00682 HMGL-like VV93_v1c04550 PF08502 LeuA allosteric (dimerisation) domain VV93_v1c04570 PF01569 PAP2 superfamily VV93_v1c04590 PF03466 LysR substrate binding domain VV93_v1c04590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c04600 PF00501 AMP-binding enzyme VV93_v1c04610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_v1c04610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_v1c04610 PF00205 Thiamine pyrophosphate enzyme, central domain VV93_v1c04620 PF10369 Small subunit of acetolactate synthase VV93_v1c04630 PF07694 5TMR of 5TMR-LYT VV93_v1c04630 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c04660 PF02887 Pyruvate kinase, alpha/beta domain VV93_v1c04660 PF00224 Pyruvate kinase, barrel domain VV93_v1c04670 PF08220 DeoR-like helix-turn-helix domain VV93_v1c04670 PF00455 DeoR C terminal sensor domain VV93_v1c04680 PF01380 SIS domain VV93_v1c04690 PF05068 Mannitol repressor VV93_v1c04720 PF01232 Mannitol dehydrogenase Rossmann domain VV93_v1c04720 PF08125 Mannitol dehydrogenase C-terminal domain VV93_v1c04730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_v1c04730 PF02378 Phosphotransferase system, EIIC VV93_v1c04730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c04740 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_v1c04790 PF01867 CRISPR associated protein Cas1 VV93_v1c04800 PF18019 HD domain VV93_v1c04810 PF09611 CRISPR-associated protein (Cas_Csy1) VV93_v1c04820 PF09614 CRISPR-associated protein (Cas_Csy2) VV93_v1c04830 PF09615 CRISPR-associated protein (Cas_Csy3) VV93_v1c04900 PF04002 RadC-like JAB domain VV93_v1c04930 PF06803 Protein of unknown function (DUF1232) VV93_v1c05020 PF00589 Phage integrase family VV93_v1c05020 PF13356 Arm DNA-binding domain VV93_v1c05030 PF04545 Sigma-70, region 4 VV93_v1c05030 PF04546 Sigma-70, non-essential region VV93_v1c05030 PF03979 Sigma-70 factor, region 1.1 VV93_v1c05030 PF04539 Sigma-70 region 3 VV93_v1c05030 PF04542 Sigma-70 region 2 VV93_v1c05030 PF00140 Sigma-70 factor, region 1.2 VV93_v1c05040 PF01807 CHC2 zinc finger VV93_v1c05040 PF10410 DnaB-helicase binding domain of primase VV93_v1c05040 PF08278 DNA primase DnaG DnaB-binding VV93_v1c05040 PF08275 DNA primase catalytic core, N-terminal domain VV93_v1c05050 PF09424 Yqey-like protein VV93_v1c05060 PF01165 Ribosomal protein S21 VV93_v1c05070 PF00814 Glycoprotease family VV93_v1c05080 PF12697 Alpha/beta hydrolase family VV93_v1c05090 PF02660 Glycerol-3-phosphate acyltransferase VV93_v1c05100 PF02152 Dihydroneopterin aldolase VV93_v1c05110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV93_v1c05120 PF02673 Bacitracin resistance protein BacA VV93_v1c05130 PF01743 Poly A polymerase head domain VV93_v1c05130 PF01966 HD domain VV93_v1c05130 PF12627 Probable RNA and SrmB- binding site of polymerase A VV93_v1c05140 PF13401 AAA domain VV93_v1c05140 PF01471 Putative peptidoglycan binding domain VV93_v1c05150 PF08239 Bacterial SH3 domain VV93_v1c05160 PF01384 Phosphate transporter family VV93_v1c05170 PF01865 Protein of unknown function DUF47 VV93_v1c05180 PF01928 CYTH domain VV93_v1c05190 PF07885 Ion channel VV93_v1c05200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c05200 PF00672 HAMP domain VV93_v1c05200 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c05210 PF08335 GlnD PII-uridylyltransferase VV93_v1c05210 PF03710 Glutamate-ammonia ligase adenylyltransferase VV93_v1c05220 PF01467 Cytidylyltransferase-like VV93_v1c05220 PF00294 pfkB family carbohydrate kinase VV93_v1c05230 PF02321 Outer membrane efflux protein VV93_v1c05240 PF00293 NUDIX domain VV93_v1c05250 PF06853 Protein of unknown function (DUF1249) VV93_v1c05260 PF00149 Calcineurin-like phosphoesterase VV93_v1c05270 PF05728 Uncharacterised protein family (UPF0227) VV93_v1c05290 PF00204 DNA gyrase B VV93_v1c05290 PF00986 DNA gyrase B subunit, carboxyl terminus VV93_v1c05290 PF01751 Toprim domain VV93_v1c05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c05300 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_v1c05300 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_v1c05310 PF13180 PDZ domain VV93_v1c05320 PF00595 PDZ domain VV93_v1c05330 PF06295 Protein of unknown function (DUF1043) VV93_v1c05340 PF03969 AFG1-like ATPase VV93_v1c05350 PF00572 Ribosomal protein L13 VV93_v1c05360 PF00380 Ribosomal protein S9/S16 VV93_v1c05370 PF00355 Rieske [2Fe-2S] domain VV93_v1c05370 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VV93_v1c05380 PF00032 Cytochrome b(C-terminal)/b6/petD VV93_v1c05380 PF00033 Cytochrome b/b6/petB VV93_v1c05390 PF02167 Cytochrome C1 family VV93_v1c05400 PF02798 Glutathione S-transferase, N-terminal domain VV93_v1c05400 PF00043 Glutathione S-transferase, C-terminal domain VV93_v1c05410 PF04386 Stringent starvation protein B VV93_v1c05430 PF04972 BON domain VV93_v1c05440 PF13580 SIS domain VV93_v1c05450 PF02021 Uncharacterised protein family UPF0102 VV93_v1c05460 PF04348 LppC putative lipoprotein VV93_v1c05470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_v1c05490 PF01795 MraW methylase family VV93_v1c05500 PF04999 Cell division protein FtsL VV93_v1c05510 PF03717 Penicillin-binding Protein dimerisation domain VV93_v1c05510 PF00905 Penicillin binding protein transpeptidase domain VV93_v1c05520 PF08245 Mur ligase middle domain VV93_v1c05520 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c05520 PF01225 Mur ligase family, catalytic domain VV93_v1c05530 PF01225 Mur ligase family, catalytic domain VV93_v1c05530 PF08245 Mur ligase middle domain VV93_v1c05530 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c05540 PF00953 Glycosyl transferase family 4 VV93_v1c05540 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VV93_v1c05550 PF08245 Mur ligase middle domain VV93_v1c05550 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c05560 PF01098 Cell cycle protein VV93_v1c05570 PF03033 Glycosyltransferase family 28 N-terminal domain VV93_v1c05570 PF04101 Glycosyltransferase family 28 C-terminal domain VV93_v1c05580 PF01225 Mur ligase family, catalytic domain VV93_v1c05580 PF08245 Mur ligase middle domain VV93_v1c05580 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c05590 PF03799 Cell division protein FtsQ VV93_v1c05590 PF08478 POTRA domain, FtsQ-type VV93_v1c05600 PF02491 SHS2 domain inserted in FTSA VV93_v1c05610 PF12327 FtsZ family, C-terminal domain VV93_v1c05610 PF00091 Tubulin/FtsZ family, GTPase domain VV93_v1c05620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VV93_v1c05640 PF02810 SEC-C motif VV93_v1c05640 PF07517 SecA DEAD-like domain VV93_v1c05640 PF01043 SecA preprotein cross-linking domain VV93_v1c05640 PF07516 SecA Wing and Scaffold domain VV93_v1c05650 PF00293 NUDIX domain VV93_v1c05660 PF05173 Dihydrodipicolinate reductase, C-terminus VV93_v1c05660 PF01113 Dihydrodipicolinate reductase, N-terminus VV93_v1c05670 PF00117 Glutamine amidotransferase class-I VV93_v1c05670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VV93_v1c05680 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV93_v1c05680 PF02142 MGS-like domain VV93_v1c05680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_v1c05700 PF01925 Sulfite exporter TauE/SafE VV93_v1c05710 PF03466 LysR substrate binding domain VV93_v1c05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c05720 PF03458 UPF0126 domain VV93_v1c05730 PF01497 Periplasmic binding protein VV93_v1c05740 PF17113 Regulatory signalling modulator protein AmpE VV93_v1c05740 PF03186 CobD/Cbib protein VV93_v1c05750 PF01048 Phosphorylase superfamily VV93_v1c05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c05770 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV93_v1c05780 PF04898 Glutamate synthase central domain VV93_v1c05780 PF01645 Conserved region in glutamate synthase VV93_v1c05780 PF00310 Glutamine amidotransferases class-II VV93_v1c05780 PF01493 GXGXG motif VV93_v1c05790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV93_v1c05790 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c05800 PF00310 Glutamine amidotransferases class-II VV93_v1c05800 PF04898 Glutamate synthase central domain VV93_v1c05800 PF01645 Conserved region in glutamate synthase VV93_v1c05800 PF01493 GXGXG motif VV93_v1c05810 PF16199 Radical_SAM C-terminal domain VV93_v1c05810 PF04055 Radical SAM superfamily VV93_v1c05820 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c05820 PF00563 EAL domain VV93_v1c05820 PF00360 Phytochrome region VV93_v1c05820 PF01590 GAF domain VV93_v1c05830 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c05830 PF00989 PAS fold VV93_v1c05830 PF18415 Histidine kinase receptor ArcB trans-membrane domain VV93_v1c05830 PF01627 Hpt domain VV93_v1c05830 PF00072 Response regulator receiver domain VV93_v1c05850 PF00072 Response regulator receiver domain VV93_v1c05850 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c05870 PF03737 Aldolase/RraA VV93_v1c05890 PF13840 ACT domain VV93_v1c05890 PF03447 Homoserine dehydrogenase, NAD binding domain VV93_v1c05890 PF00696 Amino acid kinase family VV93_v1c05890 PF01842 ACT domain VV93_v1c05890 PF00742 Homoserine dehydrogenase VV93_v1c05900 PF00288 GHMP kinases N terminal domain VV93_v1c05900 PF08544 GHMP kinases C terminal VV93_v1c05910 PF14821 Threonine synthase N terminus VV93_v1c05910 PF00291 Pyridoxal-phosphate dependent enzyme VV93_v1c05920 PF01228 Glycine radical VV93_v1c05930 PF01261 Xylose isomerase-like TIM barrel VV93_v1c05950 PF03167 Uracil DNA glycosylase superfamily VV93_v1c05980 PF01235 Sodium:alanine symporter family VV93_v1c05990 PF03883 Peroxide stress protein YaaA VV93_v1c06000 PF00271 Helicase conserved C-terminal domain VV93_v1c06000 PF00270 DEAD/DEAH box helicase VV93_v1c06010 PF05175 Methyltransferase small domain VV93_v1c06020 PF05525 Branched-chain amino acid transport protein VV93_v1c06030 PF00258 Flavodoxin VV93_v1c06040 PF00589 Phage integrase family VV93_v1c06040 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c06050 PF10411 Disulfide bond isomerase protein N-terminus VV93_v1c06050 PF13098 Thioredoxin-like domain VV93_v1c06060 PF17768 RecJ OB domain VV93_v1c06060 PF02272 DHHA1 domain VV93_v1c06060 PF01368 DHH family VV93_v1c06070 PF00472 RF-1 domain VV93_v1c06070 PF03462 PCRF domain VV93_v1c06080 PF01336 OB-fold nucleic acid binding domain VV93_v1c06080 PF00152 tRNA synthetases class II (D, K and N) VV93_v1c06090 PF06505 Activator of aromatic catabolism VV93_v1c06090 PF02954 Bacterial regulatory protein, Fis family VV93_v1c06090 PF02830 V4R domain VV93_v1c06090 PF00158 Sigma-54 interaction domain VV93_v1c06120 PF00248 Aldo/keto reductase family VV93_v1c06140 PF02976 DNA mismatch repair enzyme MutH VV93_v1c06150 PF00293 NUDIX domain VV93_v1c06160 PF01590 GAF domain VV93_v1c06160 PF05524 PEP-utilising enzyme, N-terminal VV93_v1c06160 PF00391 PEP-utilising enzyme, mobile domain VV93_v1c06160 PF02896 PEP-utilising enzyme, TIM barrel domain VV93_v1c06170 PF01925 Sulfite exporter TauE/SafE VV93_v1c06180 PF01790 Prolipoprotein diacylglyceryl transferase VV93_v1c06190 PF00303 Thymidylate synthase VV93_v1c06210 PF02690 Na+/Pi-cotransporter VV93_v1c06220 PF03466 LysR substrate binding domain VV93_v1c06220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c06230 PF01022 Bacterial regulatory protein, arsR family VV93_v1c06240 PF01649 Ribosomal protein S20 VV93_v1c06250 PF03023 Lipid II flippase MurJ VV93_v1c06260 PF06574 FAD synthetase VV93_v1c06260 PF01687 Riboflavin kinase VV93_v1c06270 PF00133 tRNA synthetases class I (I, L, M and V) VV93_v1c06270 PF06827 Zinc finger found in FPG and IleRS VV93_v1c06270 PF08264 Anticodon-binding domain of tRNA VV93_v1c06280 PF01252 Signal peptidase (SPase) II VV93_v1c06290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c06300 PF02401 LytB protein VV93_v1c06310 PF04397 LytTr DNA-binding domain VV93_v1c06310 PF00072 Response regulator receiver domain VV93_v1c06320 PF07694 5TMR of 5TMR-LYT VV93_v1c06320 PF06580 Histidine kinase VV93_v1c06330 PF02554 Carbon starvation protein CstA VV93_v1c06360 PF03702 Anhydro-N-acetylmuramic acid kinase VV93_v1c06370 PF00933 Glycosyl hydrolase family 3 N terminal domain VV93_v1c06380 PF00793 DAHP synthetase I family VV93_v1c06390 PF01817 Chorismate mutase type II VV93_v1c06390 PF02153 Prephenate dehydrogenase VV93_v1c06400 PF04225 Opacity-associated protein A LysM-like domain VV93_v1c06400 PF01551 Peptidase family M23 VV93_v1c06410 PF07238 PilZ domain VV93_v1c06420 PF12848 ABC transporter VV93_v1c06420 PF00005 ABC transporter VV93_v1c06430 PF14718 Soluble lytic murein transglycosylase L domain VV93_v1c06430 PF01464 Transglycosylase SLT domain VV93_v1c06440 PF01371 Trp repressor protein VV93_v1c06450 PF01931 Protein of unknown function DUF84 VV93_v1c06460 PF00800 Prephenate dehydratase VV93_v1c06460 PF01817 Chorismate mutase type II VV93_v1c06470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV93_v1c06480 PF13525 Outer membrane lipoprotein VV93_v1c06490 PF00849 RNA pseudouridylate synthase VV93_v1c06490 PF01479 S4 domain VV93_v1c06510 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c06510 PF07724 AAA domain (Cdc48 subfamily) VV93_v1c06510 PF17871 AAA lid domain VV93_v1c06510 PF02861 Clp amino terminal domain, pathogenicity island component VV93_v1c06510 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_v1c06530 PF13495 Phage integrase, N-terminal SAM-like domain VV93_v1c06530 PF00589 Phage integrase family VV93_v1c06640 PF00145 C-5 cytosine-specific DNA methylase VV93_v1c06660 PF03411 Penicillin-insensitive murein endopeptidase VV93_v1c06670 PF00037 4Fe-4S binding domain VV93_v1c06690 PF04381 Putative exonuclease, RdgC VV93_v1c06700 PF00072 Response regulator receiver domain VV93_v1c06700 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c06710 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c06710 PF00989 PAS fold VV93_v1c06710 PF11808 Phosphate regulon sensor protein PhoR VV93_v1c06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c06720 PF12849 PBP superfamily domain VV93_v1c06730 PF02541 Ppx/GppA phosphatase family VV93_v1c06740 PF13090 Polyphosphate kinase C-terminal domain 2 VV93_v1c06740 PF17941 Polyphosphate kinase C-terminal domain 1 VV93_v1c06740 PF13089 Polyphosphate kinase N-terminal domain VV93_v1c06740 PF02503 Polyphosphate kinase middle domain VV93_v1c06750 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c06760 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c06770 PF00005 ABC transporter VV93_v1c06780 PF01895 PhoU domain VV93_v1c06820 PF03466 LysR substrate binding domain VV93_v1c06820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c06830 PF03976 Polyphosphate kinase 2 (PPK2) VV93_v1c06840 PF03932 CutC family VV93_v1c06850 PF10417 C-terminal domain of 1-Cys peroxiredoxin VV93_v1c06850 PF00578 AhpC/TSA family VV93_v1c06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c06860 PF03466 LysR substrate binding domain VV93_v1c06870 PF01274 Malate synthase VV93_v1c06880 PF00463 Isocitrate lyase family VV93_v1c06890 PF00571 CBS domain VV93_v1c06910 PF02547 Queuosine biosynthesis protein VV93_v1c06920 PF01702 Queuine tRNA-ribosyltransferase VV93_v1c06930 PF02699 Preprotein translocase subunit VV93_v1c06940 PF07549 SecD/SecF GG Motif VV93_v1c06940 PF13721 SecD export protein N-terminal TM region VV93_v1c06940 PF02355 Protein export membrane protein VV93_v1c06950 PF07549 SecD/SecF GG Motif VV93_v1c06950 PF02355 Protein export membrane protein VV93_v1c06980 PF00459 Inositol monophosphatase family VV93_v1c06990 PF00588 SpoU rRNA Methylase family VV93_v1c07000 PF02082 Transcriptional regulator VV93_v1c07010 PF00266 Aminotransferase class-V VV93_v1c07020 PF01592 NifU-like N terminal domain VV93_v1c07030 PF01521 Iron-sulphur cluster biosynthesis VV93_v1c07040 PF00226 DnaJ domain VV93_v1c07040 PF07743 HSCB C-terminal oligomerisation domain VV93_v1c07050 PF00012 Hsp70 protein VV93_v1c07060 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c07070 PF04384 Iron-sulphur cluster assembly VV93_v1c07080 PF00883 Cytosol aminopeptidase family, catalytic domain VV93_v1c07080 PF12404 Peptidase VV93_v1c07090 PF00334 Nucleoside diphosphate kinase VV93_v1c07100 PF04055 Radical SAM superfamily VV93_v1c07110 PF13464 Domain of unknown function (DUF4115) VV93_v1c07120 PF04551 GcpE protein VV93_v1c07130 PF13393 Histidyl-tRNA synthetase VV93_v1c07130 PF03129 Anticodon binding domain VV93_v1c07140 PF09976 Tetratricopeptide repeat-like domain VV93_v1c07150 PF13360 PQQ-like domain VV93_v1c07160 PF01926 50S ribosome-binding GTPase VV93_v1c07160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VV93_v1c07180 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c07180 PF13185 GAF domain VV93_v1c07200 PF02601 Exonuclease VII, large subunit VV93_v1c07200 PF13742 OB-fold nucleic acid binding domain VV93_v1c07210 PF00478 IMP dehydrogenase / GMP reductase domain VV93_v1c07210 PF00571 CBS domain VV93_v1c07220 PF00958 GMP synthase C terminal domain VV93_v1c07220 PF02540 NAD synthase VV93_v1c07220 PF00117 Glutamine amidotransferase class-I VV93_v1c07230 PF06483 Chitinase C VV93_v1c07230 PF00704 Glycosyl hydrolases family 18 VV93_v1c07240 PF01184 GPR1/FUN34/yaaH family VV93_v1c07250 PF01235 Sodium:alanine symporter family VV93_v1c07260 PF01266 FAD dependent oxidoreductase VV93_v1c07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c07270 PF03466 LysR substrate binding domain VV93_v1c07280 PF07885 Ion channel VV93_v1c07290 PF02028 BCCT, betaine/carnitine/choline family transporter VV93_v1c07310 PF01300 Telomere recombination VV93_v1c07310 PF03481 Putative GTP-binding controlling metal-binding VV93_v1c07450 PF00075 RNase H VV93_v1c07520 PF04002 RadC-like JAB domain VV93_v1c07580 PF00589 Phage integrase family VV93_v1c07580 PF13356 Arm DNA-binding domain VV93_v1c07590 PF01668 SmpB protein VV93_v1c07600 PF03364 Polyketide cyclase / dehydrase and lipid transport VV93_v1c07610 PF03658 RnfH family Ubiquitin VV93_v1c07620 PF04355 SmpA / OmlA family VV93_v1c07630 PF02463 RecF/RecN/SMC N terminal domain VV93_v1c07640 PF01513 ATP-NAD kinase VV93_v1c07650 PF01025 GrpE VV93_v1c07680 PF00375 Sodium:dicarboxylate symporter family VV93_v1c07730 PF00012 Hsp70 protein VV93_v1c07740 PF00226 DnaJ domain VV93_v1c07740 PF00684 DnaJ central domain VV93_v1c07740 PF01556 DnaJ C terminal domain VV93_v1c07750 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c07750 PF00114 Pilin (bacterial filament) VV93_v1c07760 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c07760 PF00114 Pilin (bacterial filament) VV93_v1c07800 PF03806 AbgT putative transporter family VV93_v1c07810 PF00756 Putative esterase VV93_v1c07840 PF03466 LysR substrate binding domain VV93_v1c07840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c07850 PF14437 MafB19-like deaminase VV93_v1c07860 PF01464 Transglycosylase SLT domain VV93_v1c07860 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c07870 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VV93_v1c07870 PF02769 AIR synthase related protein, C-terminal domain VV93_v1c07870 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VV93_v1c07920 PF01546 Peptidase family M20/M25/M40 VV93_v1c07920 PF07687 Peptidase dimerisation domain VV93_v1c07930 PF00860 Permease family VV93_v1c07940 PF00156 Phosphoribosyl transferase domain VV93_v1c07960 PF07417 Sigma factor-binding transcriptional regulator Crl VV93_v1c07970 PF00696 Amino acid kinase family VV93_v1c07970 PF01472 PUA domain VV93_v1c07980 PF00171 Aldehyde dehydrogenase family VV93_v1c07990 PF03477 ATP cone domain VV93_v1c08000 PF01872 RibD C-terminal domain VV93_v1c08000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_v1c08010 PF00677 Lumazine binding domain VV93_v1c08020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VV93_v1c08020 PF00925 GTP cyclohydrolase II VV93_v1c08030 PF00885 6,7-dimethyl-8-ribityllumazine synthase VV93_v1c08040 PF01029 NusB family VV93_v1c08050 PF02769 AIR synthase related protein, C-terminal domain VV93_v1c08050 PF00586 AIR synthase related protein, N-terminal domain VV93_v1c08060 PF04608 Phosphatidylglycerophosphatase A VV93_v1c08070 PF02780 Transketolase, C-terminal domain VV93_v1c08070 PF02779 Transketolase, pyrimidine binding domain VV93_v1c08070 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VV93_v1c08080 PF00348 Polyprenyl synthetase VV93_v1c08090 PF02609 Exonuclease VII small subunit VV93_v1c08100 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c08110 PF13677 Membrane MotB of proton-channel complex MotA/MotB VV93_v1c08110 PF00691 OmpA family VV93_v1c08120 PF02926 THUMP domain VV93_v1c08120 PF02568 Thiamine biosynthesis protein (ThiI) VV93_v1c08150 PF03466 LysR substrate binding domain VV93_v1c08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c08170 PF04241 Protein of unknown function (DUF423) VV93_v1c08180 PF01728 FtsJ-like methyltransferase VV93_v1c08180 PF18125 RlmM ferredoxin-like domain VV93_v1c08190 PF01223 DNA/RNA non-specific endonuclease VV93_v1c08200 PF01367 5'-3' exonuclease, C-terminal SAM fold VV93_v1c08200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV93_v1c08210 PF03641 Possible lysine decarboxylase VV93_v1c08210 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VV93_v1c08210 PF11892 Domain of unknown function (DUF3412) VV93_v1c08220 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c08240 PF14489 QueF-like protein VV93_v1c08240 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VV93_v1c08250 PF07348 Syd protein (SUKH-2) VV93_v1c08260 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VV93_v1c08270 PF03180 NLPA lipoprotein VV93_v1c08280 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c08290 PF00005 ABC transporter VV93_v1c08290 PF09383 NIL domain VV93_v1c08310 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c08320 PF02378 Phosphotransferase system, EIIC VV93_v1c08320 PF00367 phosphotransferase system, EIIB VV93_v1c08330 PF16657 Maltogenic Amylase, C-terminal domain VV93_v1c08330 PF00128 Alpha amylase, catalytic domain VV93_v1c08350 PF00464 Serine hydroxymethyltransferase VV93_v1c08370 PF04055 Radical SAM superfamily VV93_v1c08370 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VV93_v1c08380 PF03099 Biotin/lipoate A/B protein ligase family VV93_v1c08390 PF04359 Protein of unknown function (DUF493) VV93_v1c08400 PF07943 Penicillin-binding protein 5, C-terminal domain VV93_v1c08400 PF00768 D-alanyl-D-alanine carboxypeptidase VV93_v1c08410 PF05036 Sporulation related domain VV93_v1c08410 PF03330 Lytic transglycolase VV93_v1c08420 PF01098 Cell cycle protein VV93_v1c08430 PF00905 Penicillin binding protein transpeptidase domain VV93_v1c08430 PF03717 Penicillin-binding Protein dimerisation domain VV93_v1c08440 PF02590 Predicted SPOUT methyltransferase VV93_v1c08460 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VV93_v1c08460 PF06144 DNA polymerase III, delta subunit VV93_v1c08470 PF04390 Lipopolysaccharide-assembly VV93_v1c08480 PF13603 Leucyl-tRNA synthetase, Domain 2 VV93_v1c08480 PF00133 tRNA synthetases class I (I, L, M and V) VV93_v1c08480 PF08264 Anticodon-binding domain of tRNA VV93_v1c08490 PF07295 Zinc-ribbon containing domain VV93_v1c08500 PF00795 Carbon-nitrogen hydrolase VV93_v1c08510 PF03471 Transporter associated domain VV93_v1c08510 PF00571 CBS domain VV93_v1c08520 PF02130 Uncharacterized protein family UPF0054 VV93_v1c08530 PF02562 PhoH-like protein VV93_v1c08540 PF00919 Uncharacterized protein family UPF0004 VV93_v1c08540 PF01938 TRAM domain VV93_v1c08540 PF04055 Radical SAM superfamily VV93_v1c08550 PF01494 FAD binding domain VV93_v1c08560 PF06071 Protein of unknown function (DUF933) VV93_v1c08560 PF01926 50S ribosome-binding GTPase VV93_v1c08570 PF01195 Peptidyl-tRNA hydrolase VV93_v1c08580 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VV93_v1c08580 PF14572 Phosphoribosyl synthetase-associated domain VV93_v1c08590 PF00288 GHMP kinases N terminal domain VV93_v1c08590 PF08544 GHMP kinases C terminal VV93_v1c08600 PF03550 Outer membrane lipoprotein LolB VV93_v1c08610 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VV93_v1c08610 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VV93_v1c08610 PF01488 Shikimate / quinate 5-dehydrogenase VV93_v1c08620 PF00472 RF-1 domain VV93_v1c08620 PF03462 PCRF domain VV93_v1c08630 PF13847 Methyltransferase domain VV93_v1c08630 PF17827 PrmC N-terminal domain VV93_v1c08640 PF04247 Invasion gene expression up-regulator, SirB VV93_v1c08650 PF13369 Transglutaminase-like superfamily VV93_v1c08660 PF00793 DAHP synthetase I family VV93_v1c08670 PF02872 5'-nucleotidase, C-terminal domain VV93_v1c08670 PF00149 Calcineurin-like phosphoesterase VV93_v1c08680 PF04073 Aminoacyl-tRNA editing domain VV93_v1c08690 PF01479 S4 domain VV93_v1c08690 PF00849 RNA pseudouridylate synthase VV93_v1c08700 PF01713 Smr domain VV93_v1c08720 PF01963 TraB family VV93_v1c08730 PF00728 Glycosyl hydrolase family 20, catalytic domain VV93_v1c08730 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VV93_v1c08730 PF03173 Putative carbohydrate binding domain VV93_v1c08730 PF02838 Glycosyl hydrolase family 20, domain 2 VV93_v1c08750 PF00403 Heavy-metal-associated domain VV93_v1c08760 PF13609 Gram-negative porin VV93_v1c08780 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_v1c08860 PF00072 Response regulator receiver domain VV93_v1c08860 PF01584 CheW-like domain VV93_v1c08870 PF03705 CheR methyltransferase, all-alpha domain VV93_v1c08870 PF01739 CheR methyltransferase, SAM binding domain VV93_v1c08880 PF00460 Flagella basal body rod protein VV93_v1c08890 PF00460 Flagella basal body rod protein VV93_v1c08890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_v1c08900 PF13861 FlgD Tudor-like domain VV93_v1c08900 PF13860 FlgD Ig-like domain VV93_v1c08900 PF03963 Flagellar hook capping protein - N-terminal region VV93_v1c08910 PF07559 Flagellar basal body protein FlaE VV93_v1c08910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_v1c08910 PF00460 Flagella basal body rod protein VV93_v1c08920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_v1c08920 PF00460 Flagella basal body rod protein VV93_v1c08930 PF00460 Flagella basal body rod protein VV93_v1c08930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_v1c08940 PF02107 Flagellar L-ring protein VV93_v1c08950 PF02119 Flagellar P-ring protein VV93_v1c08960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV93_v1c08960 PF10135 Rod binding protein VV93_v1c08970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_v1c08970 PF07196 Flagellin hook IN motif VV93_v1c08980 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c08990 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c08990 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c08990 PF07196 Flagellin hook IN motif VV93_v1c09000 PF07196 Flagellin hook IN motif VV93_v1c09000 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c09000 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c09010 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c09010 PF07196 Flagellin hook IN motif VV93_v1c09010 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c09020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV93_v1c09030 PF00391 PEP-utilising enzyme, mobile domain VV93_v1c09030 PF05524 PEP-utilising enzyme, N-terminal VV93_v1c09030 PF02896 PEP-utilising enzyme, TIM barrel domain VV93_v1c09040 PF00381 PTS HPr component phosphorylation site VV93_v1c09050 PF00291 Pyridoxal-phosphate dependent enzyme VV93_v1c09070 PF04354 ZipA, C-terminal FtsZ-binding domain VV93_v1c09080 PF01653 NAD-dependent DNA ligase adenylation domain VV93_v1c09080 PF03120 NAD-dependent DNA ligase OB-fold domain VV93_v1c09080 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VV93_v1c09080 PF12826 Helix-hairpin-helix motif VV93_v1c09080 PF00533 BRCA1 C Terminus (BRCT) domain VV93_v1c09120 PF01145 SPFH domain / Band 7 family VV93_v1c09120 PF16200 C-terminal region of band_7 VV93_v1c09130 PF00085 Thioredoxin VV93_v1c09140 PF00106 short chain dehydrogenase VV93_v1c09150 PF08338 Domain of unknown function (DUF1731) VV93_v1c09150 PF01370 NAD dependent epimerase/dehydratase family VV93_v1c09160 PF07556 Protein of unknown function (DUF1538) VV93_v1c09170 PF07556 Protein of unknown function (DUF1538) VV93_v1c09200 PF12850 Calcineurin-like phosphoesterase superfamily domain VV93_v1c09230 PF17323 Trans-membrane regulatory protein ToxS VV93_v1c09240 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c09250 PF00183 Hsp90 protein VV93_v1c09260 PF05191 Adenylate kinase, active site lid VV93_v1c09270 PF00762 Ferrochelatase VV93_v1c09280 PF17200 Single Cache domain 2 VV93_v1c09280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c09280 PF00672 HAMP domain VV93_v1c09290 PF00854 POT family VV93_v1c09310 PF00733 Asparagine synthase VV93_v1c09310 PF13537 Glutamine amidotransferase domain VV93_v1c09320 PF00999 Sodium/hydrogen exchanger family VV93_v1c09320 PF02254 TrkA-N domain VV93_v1c09330 PF01047 MarR family VV93_v1c09330 PF00480 ROK family VV93_v1c09340 PF01979 Amidohydrolase family VV93_v1c09350 PF02378 Phosphotransferase system, EIIC VV93_v1c09350 PF00367 phosphotransferase system, EIIB VV93_v1c09350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV93_v1c09360 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_v1c09360 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VV93_v1c09370 PF01475 Ferric uptake regulator family VV93_v1c09390 PF00258 Flavodoxin VV93_v1c09410 PF12697 Alpha/beta hydrolase family VV93_v1c09420 PF03925 SeqA protein C-terminal domain VV93_v1c09420 PF17206 SeqA protein N-terminal domain VV93_v1c09430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_v1c09430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_v1c09430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_v1c09430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_v1c09440 PF13309 HTH domain VV93_v1c09440 PF08348 YheO-like PAS domain VV93_v1c09450 PF01042 Endoribonuclease L-PSP VV93_v1c09460 PF00375 Sodium:dicarboxylate symporter family VV93_v1c09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c09470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_v1c09490 PF01784 NIF3 (NGG1p interacting factor 3) VV93_v1c09500 PF00285 Citrate synthase, C-terminal domain VV93_v1c09510 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV93_v1c09520 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV93_v1c09530 PF02910 Fumarate reductase flavoprotein C-term VV93_v1c09530 PF00890 FAD binding domain VV93_v1c09540 PF13085 2Fe-2S iron-sulfur cluster binding domain VV93_v1c09550 PF02779 Transketolase, pyrimidine binding domain VV93_v1c09550 PF16078 2-oxoglutarate dehydrogenase N-terminus VV93_v1c09550 PF16870 2-oxoglutarate dehydrogenase C-terminal VV93_v1c09550 PF00676 Dehydrogenase E1 component VV93_v1c09560 PF02817 e3 binding domain VV93_v1c09560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV93_v1c09560 PF00364 Biotin-requiring enzyme VV93_v1c09570 PF00549 CoA-ligase VV93_v1c09570 PF08442 ATP-grasp domain VV93_v1c09580 PF00549 CoA-ligase VV93_v1c09580 PF02629 CoA binding domain VV93_v1c09590 PF00950 ABC 3 transport family VV93_v1c09600 PF00005 ABC transporter VV93_v1c09610 PF01297 Zinc-uptake complex component A periplasmic VV93_v1c09630 PF04023 FeoA domain VV93_v1c09640 PF07664 Ferrous iron transport protein B C terminus VV93_v1c09640 PF02421 Ferrous iron transport protein B VV93_v1c09640 PF07670 Nucleoside recognition VV93_v1c09670 PF05746 DALR anticodon binding domain VV93_v1c09670 PF03485 Arginyl tRNA synthetase N terminal domain VV93_v1c09670 PF00750 tRNA synthetases class I (R) VV93_v1c09680 PF06185 YecM protein VV93_v1c09690 PF01842 ACT domain VV93_v1c09690 PF00551 Formyl transferase VV93_v1c09710 PF04851 Type III restriction enzyme, res subunit VV93_v1c09710 PF13307 Helicase C-terminal domain VV93_v1c09720 PF00814 Glycoprotease family VV93_v1c09750 PF00561 alpha/beta hydrolase fold VV93_v1c09760 PF00501 AMP-binding enzyme VV93_v1c09760 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c09770 PF00570 HRDC domain VV93_v1c09770 PF01612 3'-5' exonuclease VV93_v1c09780 PF03776 Septum formation topological specificity factor MinE VV93_v1c09790 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_v1c09800 PF03775 Septum formation inhibitor MinC, C-terminal domain VV93_v1c09800 PF05209 Septum formation inhibitor MinC, N-terminal domain VV93_v1c09810 PF05166 YcgL domain VV93_v1c09820 PF13406 Transglycosylase SLT domain VV93_v1c09830 PF03466 LysR substrate binding domain VV93_v1c09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c09840 PF07670 Nucleoside recognition VV93_v1c09840 PF01773 Na+ dependent nucleoside transporter N-terminus VV93_v1c09840 PF07662 Na+ dependent nucleoside transporter C-terminus VV93_v1c09860 PF00072 Response regulator receiver domain VV93_v1c09860 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c09870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c09870 PF18719 ArlS sensor domain VV93_v1c09870 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c09880 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_v1c09880 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_v1c09900 PF07977 FabA-like domain VV93_v1c09910 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_v1c09910 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_v1c09960 PF00221 Aromatic amino acid lyase VV93_v1c09970 PF00535 Glycosyl transferase family 2 VV93_v1c09990 PF00501 AMP-binding enzyme VV93_v1c09990 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c10010 PF00550 Phosphopantetheine attachment site VV93_v1c10020 PF00550 Phosphopantetheine attachment site VV93_v1c10070 PF04820 Tryptophan halogenase VV93_v1c10090 PF00672 HAMP domain VV93_v1c10090 PF02743 Cache domain VV93_v1c10090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c10100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VV93_v1c10110 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c10110 PF00072 Response regulator receiver domain VV93_v1c10120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c10120 PF00672 HAMP domain VV93_v1c10120 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c10130 PF01547 Bacterial extracellular solute-binding protein VV93_v1c10150 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c10160 PF00005 ABC transporter VV93_v1c10160 PF03459 TOBE domain VV93_v1c10160 PF17912 MalK OB fold domain VV93_v1c10170 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_v1c10180 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV93_v1c10190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_v1c10210 PF02954 Bacterial regulatory protein, Fis family VV93_v1c10210 PF00072 Response regulator receiver domain VV93_v1c10210 PF00158 Sigma-54 interaction domain VV93_v1c10220 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c10220 PF02743 Cache domain VV93_v1c10220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c10240 PF05698 Bacterial trigger factor protein (TF) C-terminus VV93_v1c10240 PF05697 Bacterial trigger factor protein (TF) VV93_v1c10240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c10250 PF00574 Clp protease VV93_v1c10260 PF07724 AAA domain (Cdc48 subfamily) VV93_v1c10260 PF06689 ClpX C4-type zinc finger VV93_v1c10260 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_v1c10270 PF02190 ATP-dependent protease La (LON) substrate-binding domain VV93_v1c10270 PF05362 Lon protease (S16) C-terminal proteolytic domain VV93_v1c10270 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c10280 PF00216 Bacterial DNA-binding protein VV93_v1c10290 PF13145 PPIC-type PPIASE domain VV93_v1c10330 PF13286 Phosphohydrolase-associated domain VV93_v1c10330 PF01966 HD domain VV93_v1c10350 PF00155 Aminotransferase class I and II VV93_v1c10360 PF00425 chorismate binding enzyme VV93_v1c10370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_v1c10370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_v1c10370 PF16582 Middle domain of thiamine pyrophosphate VV93_v1c10380 PF12697 Alpha/beta hydrolase family VV93_v1c10390 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c10400 PF13378 Enolase C-terminal domain-like VV93_v1c10410 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c10410 PF00501 AMP-binding enzyme VV93_v1c10430 PF03601 Conserved hypothetical protein 698 VV93_v1c10440 PF07690 Major Facilitator Superfamily VV93_v1c10480 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c10480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c10490 PF00873 AcrB/AcrD/AcrF family VV93_v1c10520 PF00291 Pyridoxal-phosphate dependent enzyme VV93_v1c10530 PF01037 Lrp/AsnC ligand binding domain VV93_v1c10530 PF13404 AsnC-type helix-turn-helix domain VV93_v1c10560 PF09619 Type III secretion system lipoprotein chaperone (YscW) VV93_v1c10570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VV93_v1c10590 PF13426 PAS domain VV93_v1c10590 PF00563 EAL domain VV93_v1c10590 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c10600 PF07969 Amidohydrolase family VV93_v1c10630 PF02743 Cache domain VV93_v1c10630 PF00672 HAMP domain VV93_v1c10630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c10640 PF01263 Aldose 1-epimerase VV93_v1c10650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_v1c10650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_v1c10660 PF01641 SelR domain VV93_v1c10680 PF07023 Protein of unknown function (DUF1315) VV93_v1c10690 PF17763 Glutaminase/Asparaginase C-terminal domain VV93_v1c10690 PF00710 Asparaginase, N-terminal VV93_v1c10700 PF01343 Peptidase family S49 VV93_v1c10710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VV93_v1c10710 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c10720 PF00881 Nitroreductase family VV93_v1c10730 PF01751 Toprim domain VV93_v1c10730 PF01131 DNA topoisomerase VV93_v1c10740 PF00850 Histone deacetylase domain VV93_v1c10800 PF00072 Response regulator receiver domain VV93_v1c10800 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c10810 PF13091 PLD-like domain VV93_v1c10820 PF04074 YhcH/YjgK/YiaL VV93_v1c10830 PF02386 Cation transport protein VV93_v1c10840 PF02254 TrkA-N domain VV93_v1c10840 PF02080 TrkA-C domain VV93_v1c10850 PF00884 Sulfatase VV93_v1c10850 PF11893 Domain of unknown function (DUF3413) VV93_v1c10860 PF07208 Protein of unknown function (DUF1414) VV93_v1c10870 PF04245 37-kD nucleoid-associated bacterial protein VV93_v1c10900 PF03553 Na+/H+ antiporter family VV93_v1c10910 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_v1c10910 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_v1c10930 PF00520 Ion transport protein VV93_v1c10930 PF00027 Cyclic nucleotide-binding domain VV93_v1c10940 PF01914 MarC family integral membrane protein VV93_v1c10950 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c10950 PF00171 Aldehyde dehydrogenase family VV93_v1c10980 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV93_v1c10980 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV93_v1c10990 PF00462 Glutaredoxin VV93_v1c11010 PF13726 Na+-H+ antiporter family VV93_v1c11010 PF03553 Na+/H+ antiporter family VV93_v1c11020 PF00929 Exonuclease VV93_v1c11030 PF00691 OmpA family VV93_v1c11030 PF18393 MotY N-terminal domain VV93_v1c11040 PF10952 Protein of unknown function (DUF2753) VV93_v1c11050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c11060 PF00730 HhH-GPD superfamily base excision DNA repair protein VV93_v1c11060 PF00633 Helix-hairpin-helix motif VV93_v1c11060 PF10576 Iron-sulfur binding domain of endonuclease III VV93_v1c11070 PF02508 Rnf-Nqr subunit, membrane protein VV93_v1c11080 PF04205 FMN-binding domain VV93_v1c11090 PF03116 NQR2, RnfD, RnfE family VV93_v1c11100 PF10531 SLBB domain VV93_v1c11100 PF13375 RnfC Barrel sandwich hybrid domain VV93_v1c11100 PF12838 4Fe-4S dicluster domain VV93_v1c11100 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VV93_v1c11110 PF04060 Putative Fe-S cluster VV93_v1c11120 PF02508 Rnf-Nqr subunit, membrane protein VV93_v1c11130 PF12344 Ultra-violet resistance protein B VV93_v1c11130 PF02151 UvrB/uvrC motif VV93_v1c11130 PF04851 Type III restriction enzyme, res subunit VV93_v1c11130 PF00271 Helicase conserved C-terminal domain VV93_v1c11130 PF17757 UvrB interaction domain VV93_v1c11140 PF00072 Response regulator receiver domain VV93_v1c11140 PF02954 Bacterial regulatory protein, Fis family VV93_v1c11140 PF00158 Sigma-54 interaction domain VV93_v1c11150 PF01627 Hpt domain VV93_v1c11160 PF01933 Uncharacterised protein family UPF0052 VV93_v1c11170 PF06463 Molybdenum Cofactor Synthesis C VV93_v1c11170 PF04055 Radical SAM superfamily VV93_v1c11180 PF00994 Probable molybdopterin binding domain VV93_v1c11190 PF01967 MoaC family VV93_v1c11200 PF02597 ThiS family VV93_v1c11210 PF02391 MoaE protein VV93_v1c11220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c11230 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c11240 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c11240 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c11250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c11250 PF00005 ABC transporter VV93_v1c11260 PF00005 ABC transporter VV93_v1c11260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c11270 PF13409 Glutathione S-transferase, N-terminal domain VV93_v1c11290 PF03795 YCII-related domain VV93_v1c11300 PF03061 Thioesterase superfamily VV93_v1c11310 PF04279 Intracellular septation protein A VV93_v1c11330 PF00375 Sodium:dicarboxylate symporter family VV93_v1c11340 PF00290 Tryptophan synthase alpha chain VV93_v1c11350 PF00291 Pyridoxal-phosphate dependent enzyme VV93_v1c11360 PF00218 Indole-3-glycerol phosphate synthase VV93_v1c11360 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VV93_v1c11370 PF00591 Glycosyl transferase family, a/b domain VV93_v1c11370 PF02885 Glycosyl transferase family, helical bundle domain VV93_v1c11380 PF00117 Glutamine amidotransferase class-I VV93_v1c11390 PF00425 chorismate binding enzyme VV93_v1c11390 PF04715 Anthranilate synthase component I, N terminal region VV93_v1c11400 PF08056 Tryptophan operon leader peptide VV93_v1c11410 PF02811 PHP domain VV93_v1c11420 PF01300 Telomere recombination VV93_v1c11440 PF01479 S4 domain VV93_v1c11440 PF00849 RNA pseudouridylate synthase VV93_v1c11450 PF04269 Protein of unknown function, DUF440 VV93_v1c11460 PF09285 Elongation factor P, C-terminal VV93_v1c11460 PF01132 Elongation factor P (EF-P) OB domain VV93_v1c11460 PF08207 Elongation factor P (EF-P) KOW-like domain VV93_v1c11480 PF08447 PAS fold VV93_v1c11480 PF08448 PAS fold VV93_v1c11480 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c11480 PF00563 EAL domain VV93_v1c11490 PF00136 DNA polymerase family B VV93_v1c11490 PF03104 DNA polymerase family B, exonuclease domain VV93_v1c11500 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c11500 PF00072 Response regulator receiver domain VV93_v1c11510 PF08459 UvrC Helix-hairpin-helix N-terminal VV93_v1c11510 PF02151 UvrB/uvrC motif VV93_v1c11510 PF01541 GIY-YIG catalytic domain VV93_v1c11520 PF01066 CDP-alcohol phosphatidyltransferase VV93_v1c11560 PF00202 Aminotransferase class-III VV93_v1c11570 PF16653 Saccharopine dehydrogenase C-terminal domain VV93_v1c11570 PF03435 Saccharopine dehydrogenase NADP binding domain VV93_v1c11610 PF00994 Probable molybdopterin binding domain VV93_v1c11610 PF02464 Competence-damaged protein VV93_v1c11630 PF00268 Ribonucleotide reductase, small chain VV93_v1c11640 PF03477 ATP cone domain VV93_v1c11640 PF00317 Ribonucleotide reductase, all-alpha domain VV93_v1c11640 PF02867 Ribonucleotide reductase, barrel domain VV93_v1c11660 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_v1c11660 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_v1c11690 PF02335 Cytochrome c552 VV93_v1c11710 PF13247 4Fe-4S dicluster domain VV93_v1c11720 PF03916 Polysulphide reductase, NrfD VV93_v1c11730 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV93_v1c11730 PF01578 Cytochrome C assembly protein VV93_v1c11740 PF08534 Redoxin VV93_v1c11750 PF03918 Cytochrome C biogenesis protein VV93_v1c11770 PF09334 tRNA synthetases class I (M) VV93_v1c11770 PF01588 Putative tRNA binding domain VV93_v1c11780 PF10609 NUBPL iron-transfer P-loop NTPase VV93_v1c11790 PF00485 Phosphoribulokinase / Uridine kinase family VV93_v1c11810 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VV93_v1c11810 PF12557 Cob(I)alamin adenosyltransferase N terminal VV93_v1c11820 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV93_v1c11830 PF01740 STAS domain VV93_v1c11830 PF00916 Sulfate permease family VV93_v1c11840 PF12111 Polyribonucleotide phosphorylase C terminal VV93_v1c11840 PF00575 S1 RNA binding domain VV93_v1c11840 PF10150 Ribonuclease E/G family VV93_v1c11850 PF00849 RNA pseudouridylate synthase VV93_v1c11850 PF01479 S4 domain VV93_v1c11860 PF02545 Maf-like protein VV93_v1c11870 PF02620 Large ribosomal RNA subunit accumulation protein YceD VV93_v1c11880 PF01783 Ribosomal L32p protein family VV93_v1c11890 PF02504 Fatty acid synthesis protein VV93_v1c11900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VV93_v1c11900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VV93_v1c11910 PF00698 Acyl transferase domain VV93_v1c11930 PF00550 Phosphopantetheine attachment site VV93_v1c11940 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_v1c11940 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_v1c11950 PF01063 Amino-transferase class IV VV93_v1c11960 PF02618 YceG-like family VV93_v1c11970 PF02223 Thymidylate kinase VV93_v1c11980 PF09115 DNA polymerase III, delta subunit, C terminal VV93_v1c11990 PF01026 TatD related DNase VV93_v1c12000 PF02378 Phosphotransferase system, EIIC VV93_v1c12000 PF00367 phosphotransferase system, EIIB VV93_v1c12030 PF00209 Sodium:neurotransmitter symporter family VV93_v1c12060 PF01734 Patatin-like phospholipase VV93_v1c12070 PF00224 Pyruvate kinase, barrel domain VV93_v1c12070 PF02887 Pyruvate kinase, alpha/beta domain VV93_v1c12080 PF00480 ROK family VV93_v1c12090 PF00072 Response regulator receiver domain VV93_v1c12090 PF01584 CheW-like domain VV93_v1c12100 PF01336 OB-fold nucleic acid binding domain VV93_v1c12100 PF14579 Helix-hairpin-helix motif VV93_v1c12100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_v1c12100 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_v1c12100 PF02811 PHP domain VV93_v1c12130 PF00106 short chain dehydrogenase VV93_v1c12140 PF08496 Peptidase family S49 N-terminal VV93_v1c12140 PF01343 Peptidase family S49 VV93_v1c12150 PF02224 Cytidylate kinase VV93_v1c12160 PF00575 S1 RNA binding domain VV93_v1c12170 PF00216 Bacterial DNA-binding protein VV93_v1c12180 PF06305 Lipopolysaccharide assembly protein A domain VV93_v1c12190 PF18073 Rubredoxin metal binding domain VV93_v1c12200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VV93_v1c12210 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c12220 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c12220 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c12230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c12240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c12240 PF00005 ABC transporter VV93_v1c12250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c12250 PF00005 ABC transporter VV93_v1c12280 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VV93_v1c12290 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VV93_v1c12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c12320 PF03466 LysR substrate binding domain VV93_v1c12340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VV93_v1c12340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VV93_v1c12350 PF01037 Lrp/AsnC ligand binding domain VV93_v1c12360 PF09397 Ftsk gamma domain VV93_v1c12360 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VV93_v1c12360 PF17854 FtsK alpha domain VV93_v1c12360 PF01580 FtsK/SpoIIIE family VV93_v1c12370 PF03548 Outer membrane lipoprotein carrier protein LolA VV93_v1c12380 PF12002 MgsA AAA+ ATPase C terminal VV93_v1c12380 PF16193 AAA C-terminal domain VV93_v1c12380 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c12390 PF02403 Seryl-tRNA synthetase N-terminal domain VV93_v1c12390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_v1c12410 PF06968 Biotin and Thiamin Synthesis associated domain VV93_v1c12410 PF04055 Radical SAM superfamily VV93_v1c12420 PF00155 Aminotransferase class I and II VV93_v1c12430 PF08241 Methyltransferase domain VV93_v1c12460 PF01435 Peptidase family M48 VV93_v1c12480 PF00106 short chain dehydrogenase VV93_v1c12550 PF08328 Adenylosuccinate lyase C-terminal VV93_v1c12550 PF00206 Lyase VV93_v1c12560 PF04356 Protein of unknown function (DUF489) VV93_v1c12590 PF00294 pfkB family carbohydrate kinase VV93_v1c12600 PF00816 H-NS histone family VV93_v1c12620 PF03553 Na+/H+ antiporter family VV93_v1c12630 PF08029 HisG, C-terminal domain VV93_v1c12630 PF01634 ATP phosphoribosyltransferase VV93_v1c12640 PF00815 Histidinol dehydrogenase VV93_v1c12650 PF00155 Aminotransferase class I and II VV93_v1c12660 PF08645 Polynucleotide kinase 3 phosphatase VV93_v1c12660 PF00475 Imidazoleglycerol-phosphate dehydratase VV93_v1c12670 PF00117 Glutamine amidotransferase class-I VV93_v1c12680 PF00977 Histidine biosynthesis protein VV93_v1c12690 PF00977 Histidine biosynthesis protein VV93_v1c12700 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VV93_v1c12700 PF01502 Phosphoribosyl-AMP cyclohydrolase VV93_v1c12710 PF02810 SEC-C motif VV93_v1c12720 PF00563 EAL domain VV93_v1c12720 PF08668 HDOD domain VV93_v1c12730 PF00149 Calcineurin-like phosphoesterase VV93_v1c12740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV93_v1c12750 PF09190 DALR domain VV93_v1c12750 PF01406 tRNA synthetases class I (C) catalytic domain VV93_v1c12760 PF00265 Thymidine kinase VV93_v1c12780 PF01370 NAD dependent epimerase/dehydratase family VV93_v1c12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c12790 PF03466 LysR substrate binding domain VV93_v1c12830 PF01226 Formate/nitrite transporter VV93_v1c12850 PF03649 Uncharacterised protein family (UPF0014) VV93_v1c12860 PF06796 Periplasmic nitrate reductase protein NapE VV93_v1c12870 PF03264 NapC/NirT cytochrome c family, N-terminal region VV93_v1c12880 PF00384 Molybdopterin oxidoreductase VV93_v1c12880 PF18364 Molybdopterin oxidoreductase N-terminal domain VV93_v1c12880 PF01568 Molydopterin dinucleotide binding domain VV93_v1c12920 PF16875 Glycosyl hydrolase family 36 N-terminal domain VV93_v1c12920 PF16874 Glycosyl hydrolase family 36 C-terminal domain VV93_v1c12940 PF01368 DHH family VV93_v1c12940 PF02833 DHHA2 domain VV93_v1c12970 PF00005 ABC transporter VV93_v1c12980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c12980 PF00005 ABC transporter VV93_v1c12990 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c12990 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c13000 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c13010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c13020 PF02954 Bacterial regulatory protein, Fis family VV93_v1c13020 PF00158 Sigma-54 interaction domain VV93_v1c13030 PF04012 PspA/IM30 family VV93_v1c13040 PF06667 Phage shock protein B VV93_v1c13050 PF04024 PspC domain VV93_v1c13070 PF13533 Biotin-lipoyl like VV93_v1c13080 PF00873 AcrB/AcrD/AcrF family VV93_v1c13090 PF03352 Methyladenine glycosylase VV93_v1c13100 PF01053 Cys/Met metabolism PLP-dependent enzyme VV93_v1c13110 PF13396 Phospholipase_D-nuclease N-terminal VV93_v1c13110 PF13091 PLD-like domain VV93_v1c13120 PF00209 Sodium:neurotransmitter symporter family VV93_v1c13130 PF00672 HAMP domain VV93_v1c13130 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c13130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c13140 PF00849 RNA pseudouridylate synthase VV93_v1c13180 PF00970 Oxidoreductase FAD-binding domain VV93_v1c13180 PF00175 Oxidoreductase NAD-binding domain VV93_v1c13180 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c13190 PF03063 Prismane/CO dehydrogenase family VV93_v1c13200 PF00158 Sigma-54 interaction domain VV93_v1c13200 PF01590 GAF domain VV93_v1c13210 PF01066 CDP-alcohol phosphatidyltransferase VV93_v1c13220 PF00005 ABC transporter VV93_v1c13230 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c13240 PF13416 Bacterial extracellular solute-binding protein VV93_v1c13260 PF06945 Protein of unknown function (DUF1289) VV93_v1c13280 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c13280 PF00563 EAL domain VV93_v1c13280 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c13310 PF01386 Ribosomal L25p family VV93_v1c13320 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c13320 PF00672 HAMP domain VV93_v1c13320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c13330 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c13330 PF00072 Response regulator receiver domain VV93_v1c13350 PF00271 Helicase conserved C-terminal domain VV93_v1c13350 PF04851 Type III restriction enzyme, res subunit VV93_v1c13380 PF00849 RNA pseudouridylate synthase VV93_v1c13380 PF01479 S4 domain VV93_v1c13390 PF07690 Major Facilitator Superfamily VV93_v1c13410 PF00999 Sodium/hydrogen exchanger family VV93_v1c13420 PF11066 Protein of unknown function (DUF2867) VV93_v1c13420 PF13460 NAD(P)H-binding VV93_v1c13430 PF00005 ABC transporter VV93_v1c13460 PF06965 Na+/H+ antiporter 1 VV93_v1c13480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_v1c13480 PF09317 Domain of unknown function (DUF1974) VV93_v1c13480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_v1c13480 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_v1c13490 PF07055 Enoyl reductase FAD binding domain VV93_v1c13490 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VV93_v1c13490 PF12241 Trans-2-enoyl-CoA reductase catalytic region VV93_v1c13500 PF02080 TrkA-C domain VV93_v1c13500 PF06826 Predicted Permease Membrane Region VV93_v1c13510 PF00462 Glutaredoxin VV93_v1c13520 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c13530 PF01418 Helix-turn-helix domain, rpiR family VV93_v1c13530 PF01380 SIS domain VV93_v1c13540 PF00282 Pyridoxal-dependent decarboxylase conserved domain VV93_v1c13560 PF03956 Lysine exporter LysO VV93_v1c13580 PF04993 TfoX N-terminal domain VV93_v1c13580 PF04994 TfoX C-terminal domain VV93_v1c13610 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c13610 PF00989 PAS fold VV93_v1c13610 PF13188 PAS domain VV93_v1c13610 PF13426 PAS domain VV93_v1c13610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c13610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c13610 PF00989 PAS fold VV93_v1c13610 PF13188 PAS domain VV93_v1c13610 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c13610 PF13426 PAS domain VV93_v1c13630 PF00266 Aminotransferase class-V VV93_v1c13640 PF00664 ABC transporter transmembrane region VV93_v1c13640 PF00005 ABC transporter VV93_v1c13650 PF00664 ABC transporter transmembrane region VV93_v1c13650 PF00005 ABC transporter VV93_v1c13660 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c13680 PF00266 Aminotransferase class-V VV93_v1c13700 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c13700 PF00072 Response regulator receiver domain VV93_v1c13710 PF00939 Sodium:sulfate symporter transmembrane region VV93_v1c13720 PF02698 DUF218 domain VV93_v1c13730 PF00390 Malic enzyme, N-terminal domain VV93_v1c13730 PF03949 Malic enzyme, NAD binding domain VV93_v1c13740 PF00270 DEAD/DEAH box helicase VV93_v1c13740 PF00271 Helicase conserved C-terminal domain VV93_v1c13740 PF08482 ATP-dependent helicase C-terminal VV93_v1c13740 PF04408 Helicase associated domain (HA2) VV93_v1c13750 PF02253 Phospholipase A1 VV93_v1c13770 PF01259 SAICAR synthetase VV93_v1c13790 PF04172 LrgB-like family VV93_v1c13800 PF03788 LrgA family VV93_v1c13810 PF00929 Exonuclease VV93_v1c13810 PF08411 Exonuclease C-terminal VV93_v1c13840 PF02277 Phosphoribosyltransferase VV93_v1c13850 PF02654 Cobalamin-5-phosphate synthase VV93_v1c13860 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VV93_v1c13890 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VV93_v1c13900 PF01032 FecCD transport family VV93_v1c13910 PF00005 ABC transporter VV93_v1c13940 PF07690 Major Facilitator Superfamily VV93_v1c13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c13950 PF03466 LysR substrate binding domain VV93_v1c13970 PF01863 Protein of unknown function DUF45 VV93_v1c13980 PF05971 RNA methyltransferase VV93_v1c14010 PF04204 Homoserine O-succinyltransferase VV93_v1c14020 PF02872 5'-nucleotidase, C-terminal domain VV93_v1c14020 PF00149 Calcineurin-like phosphoesterase VV93_v1c14030 PF01546 Peptidase family M20/M25/M40 VV93_v1c14030 PF07687 Peptidase dimerisation domain VV93_v1c14040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c14050 PF04209 homogentisate 1,2-dioxygenase VV93_v1c14070 PF02798 Glutathione S-transferase, N-terminal domain VV93_v1c14070 PF14497 Glutathione S-transferase, C-terminal domain VV93_v1c14120 PF00072 Response regulator receiver domain VV93_v1c14120 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c14130 PF00313 'Cold-shock' DNA-binding domain VV93_v1c14140 PF00141 Peroxidase VV93_v1c14150 PF03009 Glycerophosphoryl diester phosphodiesterase family VV93_v1c14160 PF00455 DeoR C terminal sensor domain VV93_v1c14160 PF08220 DeoR-like helix-turn-helix domain VV93_v1c14170 PF17912 MalK OB fold domain VV93_v1c14170 PF00005 ABC transporter VV93_v1c14180 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c14190 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c14200 PF13416 Bacterial extracellular solute-binding protein VV93_v1c14210 PF00072 Response regulator receiver domain VV93_v1c14220 PF02743 Cache domain VV93_v1c14220 PF00672 HAMP domain VV93_v1c14220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c14230 PF01925 Sulfite exporter TauE/SafE VV93_v1c14250 PF00072 Response regulator receiver domain VV93_v1c14250 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c14300 PF01970 Tripartite tricarboxylate transporter TctA family VV93_v1c14360 PF00285 Citrate synthase, C-terminal domain VV93_v1c14370 PF00694 Aconitase C-terminal domain VV93_v1c14370 PF00330 Aconitase family (aconitate hydratase) VV93_v1c14380 PF04303 PrpF protein VV93_v1c14390 PF16177 Acetyl-coenzyme A synthetase N-terminus VV93_v1c14390 PF00501 AMP-binding enzyme VV93_v1c14390 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c14420 PF00089 Trypsin VV93_v1c14440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c14440 PF02743 Cache domain VV93_v1c14440 PF00672 HAMP domain VV93_v1c14460 PF04055 Radical SAM superfamily VV93_v1c14470 PF06508 Queuosine biosynthesis protein QueC VV93_v1c14480 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c14480 PF17151 Periplasmic sensor domain VV93_v1c14530 PF17785 PUA-like domain VV93_v1c14530 PF10672 S-adenosylmethionine-dependent methyltransferase VV93_v1c14540 PF02743 Cache domain VV93_v1c14540 PF00672 HAMP domain VV93_v1c14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c14550 PF00708 Acylphosphatase VV93_v1c14560 PF04358 DsrC like protein VV93_v1c14580 PF01027 Inhibitor of apoptosis-promoting Bax1 VV93_v1c14590 PF00005 ABC transporter VV93_v1c14600 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c14610 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c14620 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c14630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_v1c14630 PF10414 Sirohaem synthase dimerisation region VV93_v1c14630 PF14824 Sirohaem biosynthesis protein central VV93_v1c14640 PF12838 4Fe-4S dicluster domain VV93_v1c14640 PF12800 4Fe-4S binding domain VV93_v1c14650 PF12837 4Fe-4S binding domain VV93_v1c14650 PF12801 4Fe-4S binding domain VV93_v1c14660 PF01553 Acyltransferase VV93_v1c14670 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VV93_v1c14700 PF01235 Sodium:alanine symporter family VV93_v1c14760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c14790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c14790 PF00989 PAS fold VV93_v1c14790 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VV93_v1c14790 PF17203 Single cache domain 3 VV93_v1c14800 PF00072 Response regulator receiver domain VV93_v1c14800 PF12431 Transcriptional regulator VV93_v1c14810 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VV93_v1c14810 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VV93_v1c14820 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VV93_v1c14830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VV93_v1c14830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_v1c14910 PF02397 Bacterial sugar transferase VV93_v1c14930 PF13439 Glycosyltransferase Family 4 VV93_v1c14930 PF00534 Glycosyl transferases group 1 VV93_v1c15020 PF02954 Bacterial regulatory protein, Fis family VV93_v1c15020 PF00158 Sigma-54 interaction domain VV93_v1c15020 PF00072 Response regulator receiver domain VV93_v1c15030 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c15030 PF01627 Hpt domain VV93_v1c15030 PF00072 Response regulator receiver domain VV93_v1c15030 PF17149 Periplasmic sensor domain found in signal transduction proteins VV93_v1c15030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c15030 PF00672 HAMP domain VV93_v1c15060 PF02563 Polysaccharide biosynthesis/export protein VV93_v1c15060 PF10531 SLBB domain VV93_v1c15080 PF01740 STAS domain VV93_v1c15090 PF01068 ATP dependent DNA ligase domain VV93_v1c15090 PF14743 DNA ligase OB-like domain VV93_v1c15100 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c15100 PF17158 Membrane-associated sensor, integral membrane domain VV93_v1c15110 PF04461 Protein of unknown function (DUF520) VV93_v1c15120 PF00793 DAHP synthetase I family VV93_v1c15150 PF13509 S1 domain VV93_v1c15150 PF17783 CvfB-like winged helix domain VV93_v1c15160 PF01189 16S rRNA methyltransferase RsmB/F VV93_v1c15160 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VV93_v1c15160 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VV93_v1c15170 PF02470 MlaD protein VV93_v1c15180 PF04403 Paraquat-inducible protein A VV93_v1c15190 PF00664 ABC transporter transmembrane region VV93_v1c15190 PF00005 ABC transporter VV93_v1c15200 PF13185 GAF domain VV93_v1c15210 PF04352 ProQ/FINO family VV93_v1c15210 PF17516 ProQ C-terminal domain VV93_v1c15220 PF11818 C-terminal domain of tail specific protease (DUF3340) VV93_v1c15220 PF03572 Peptidase family S41 VV93_v1c15220 PF17804 Tail specific protease N-terminal domain VV93_v1c15220 PF00595 PDZ domain VV93_v1c15240 PF11940 Domain of unknown function (DUF3458) Ig-like fold VV93_v1c15240 PF01433 Peptidase family M1 domain VV93_v1c15240 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VV93_v1c15260 PF05088 Bacterial NAD-glutamate dehydrogenase VV93_v1c15270 PF01180 Dihydroorotate dehydrogenase VV93_v1c15280 PF07126 Cell-division protein ZapC VV93_v1c15290 PF10672 S-adenosylmethionine-dependent methyltransferase VV93_v1c15290 PF01170 Putative RNA methylase family UPF0020 VV93_v1c15290 PF02926 THUMP domain VV93_v1c15330 PF04957 Ribosome modulation factor VV93_v1c15340 PF07977 FabA-like domain VV93_v1c15350 PF05362 Lon protease (S16) C-terminal proteolytic domain VV93_v1c15350 PF13654 AAA domain VV93_v1c15360 PF06303 MatP N-terminal domain VV93_v1c15360 PF17414 MatP C-terminal ribbon-helix-helix domain VV93_v1c15470 PF01381 Helix-turn-helix VV93_v1c15580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c15580 PF09308 LuxQ, periplasmic VV93_v1c15580 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c15580 PF00072 Response regulator receiver domain VV93_v1c15610 PF00115 Cytochrome C and Quinol oxidase polypeptide I VV93_v1c15640 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VV93_v1c15640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV93_v1c15660 PF00403 Heavy-metal-associated domain VV93_v1c15690 PF13545 Crp-like helix-turn-helix domain VV93_v1c15690 PF00027 Cyclic nucleotide-binding domain VV93_v1c15700 PF00582 Universal stress protein family VV93_v1c15710 PF01171 PP-loop family VV93_v1c15730 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV93_v1c15750 PF00005 ABC transporter VV93_v1c15750 PF08402 TOBE domain VV93_v1c15760 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c15770 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c15780 PF13416 Bacterial extracellular solute-binding protein VV93_v1c15790 PF13416 Bacterial extracellular solute-binding protein VV93_v1c15800 PF01609 Transposase DDE domain VV93_v1c15800 PF13006 Insertion element 4 transposase N-terminal VV93_v1c15810 PF02146 Sir2 family VV93_v1c15820 PF00909 Ammonium Transporter Family VV93_v1c15910 PF13247 4Fe-4S dicluster domain VV93_v1c15920 PF01568 Molydopterin dinucleotide binding domain VV93_v1c15920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV93_v1c15920 PF00384 Molybdopterin oxidoreductase VV93_v1c15980 PF02634 FdhD/NarQ family VV93_v1c15990 PF00672 HAMP domain VV93_v1c15990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c16000 PF12848 ABC transporter VV93_v1c16000 PF00005 ABC transporter VV93_v1c16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c16030 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c16030 PF00989 PAS fold VV93_v1c16040 PF02954 Bacterial regulatory protein, Fis family VV93_v1c16040 PF00158 Sigma-54 interaction domain VV93_v1c16040 PF00072 Response regulator receiver domain VV93_v1c16050 PF12849 PBP superfamily domain VV93_v1c16060 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c16070 PF00005 ABC transporter VV93_v1c16070 PF08402 TOBE domain VV93_v1c16080 PF12804 MobA-like NTP transferase domain VV93_v1c16090 PF03454 MoeA C-terminal region (domain IV) VV93_v1c16090 PF03453 MoeA N-terminal region (domain I and II) VV93_v1c16090 PF00994 Probable molybdopterin binding domain VV93_v1c16110 PF00480 ROK family VV93_v1c16140 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c16140 PF00672 HAMP domain VV93_v1c16140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c16150 PF00877 NlpC/P60 family VV93_v1c16170 PF05230 MASE2 domain VV93_v1c16170 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c16180 PF01339 CheB methylesterase VV93_v1c16180 PF00072 Response regulator receiver domain VV93_v1c16210 PF00677 Lumazine binding domain VV93_v1c16220 PF01554 MatE VV93_v1c16280 PF13333 Integrase core domain VV93_v1c16280 PF00665 Integrase core domain VV93_v1c16280 PF13276 HTH-like domain VV93_v1c16340 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VV93_v1c16350 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VV93_v1c16380 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VV93_v1c16510 PF09905 DNA-binding protein VF530 VV93_v1c16580 PF13302 Acetyltransferase (GNAT) domain VV93_v1c16790 PF08808 RES domain VV93_v1c16820 PF13302 Acetyltransferase (GNAT) domain VV93_v1c16870 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VV93_v1c16880 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VV93_v1c17010 PF13495 Phage integrase, N-terminal SAM-like domain VV93_v1c17010 PF00589 Phage integrase family VV93_v1c17020 PF00453 Ribosomal protein L20 VV93_v1c17030 PF01632 Ribosomal protein L35 VV93_v1c17040 PF05198 Translation initiation factor IF-3, N-terminal domain VV93_v1c17040 PF00707 Translation initiation factor IF-3, C-terminal domain VV93_v1c17050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_v1c17050 PF03129 Anticodon binding domain VV93_v1c17050 PF02824 TGS domain VV93_v1c17050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV93_v1c17070 PF07070 SpoOM protein VV93_v1c17080 PF07702 UTRA domain VV93_v1c17080 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c17090 PF01979 Amidohydrolase family VV93_v1c17100 PF00491 Arginase family VV93_v1c17110 PF01175 Urocanase Rossmann-like domain VV93_v1c17110 PF17391 Urocanase N-terminal domain VV93_v1c17110 PF17392 Urocanase C-terminal domain VV93_v1c17120 PF00221 Aromatic amino acid lyase VV93_v1c17140 PF00089 Trypsin VV93_v1c17160 PF02913 FAD linked oxidases, C-terminal domain VV93_v1c17160 PF13183 4Fe-4S dicluster domain VV93_v1c17160 PF01565 FAD binding domain VV93_v1c17190 PF13488 Glycine zipper VV93_v1c17190 PF00691 OmpA family VV93_v1c17220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_v1c17220 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_v1c17230 PF02222 ATP-grasp domain VV93_v1c17240 PF05724 Thiopurine S-methyltransferase (TPMT) VV93_v1c17260 PF00216 Bacterial DNA-binding protein VV93_v1c17290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VV93_v1c17290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VV93_v1c17320 PF03484 tRNA synthetase B5 domain VV93_v1c17320 PF03147 Ferredoxin-fold anticodon binding domain VV93_v1c17320 PF01588 Putative tRNA binding domain VV93_v1c17320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VV93_v1c17320 PF03483 B3/4 domain VV93_v1c17330 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VV93_v1c17330 PF01409 tRNA synthetases class II core domain (F) VV93_v1c17340 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c17340 PF00072 Response regulator receiver domain VV93_v1c17470 PF17810 Arginine decarboxylase helical bundle domain VV93_v1c17470 PF17944 Arginine decarboxylase C-terminal helical extension VV93_v1c17470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV93_v1c17480 PF00491 Arginase family VV93_v1c17490 PF00672 HAMP domain VV93_v1c17490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c17490 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c17520 PF07690 Major Facilitator Superfamily VV93_v1c17530 PF03280 Proteobacterial lipase chaperone protein VV93_v1c17540 PF00561 alpha/beta hydrolase fold VV93_v1c17590 PF04408 Helicase associated domain (HA2) VV93_v1c17590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VV93_v1c17590 PF11898 Domain of unknown function (DUF3418) VV93_v1c17590 PF00270 DEAD/DEAH box helicase VV93_v1c17590 PF00271 Helicase conserved C-terminal domain VV93_v1c17610 PF02525 Flavodoxin-like fold VV93_v1c17680 PF00437 Type II/IV secretion system protein VV93_v1c17690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_v1c17710 PF00263 Bacterial type II and III secretion system protein VV93_v1c17710 PF04972 BON domain VV93_v1c17710 PF13629 Pilus formation protein N terminal region VV93_v1c17760 PF13358 DDE superfamily endonuclease VV93_v1c17800 PF06629 MltA-interacting protein MipA VV93_v1c17840 PF17158 Membrane-associated sensor, integral membrane domain VV93_v1c17840 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c17860 PF00012 Hsp70 protein VV93_v1c17870 PF00012 Hsp70 protein VV93_v1c17910 PF00563 EAL domain VV93_v1c17910 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c17910 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c17960 PF00534 Glycosyl transferases group 1 VV93_v1c17960 PF13439 Glycosyltransferase Family 4 VV93_v1c18060 PF02563 Polysaccharide biosynthesis/export protein VV93_v1c18060 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV93_v1c18060 PF10531 SLBB domain VV93_v1c18080 PF02397 Bacterial sugar transferase VV93_v1c18090 PF01235 Sodium:alanine symporter family VV93_v1c18100 PF00664 ABC transporter transmembrane region VV93_v1c18100 PF00005 ABC transporter VV93_v1c18110 PF00664 ABC transporter transmembrane region VV93_v1c18110 PF00005 ABC transporter VV93_v1c18140 PF00210 Ferritin-like domain VV93_v1c18150 PF00072 Response regulator receiver domain VV93_v1c18160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c18170 PF03222 Tryptophan/tyrosine permease family VV93_v1c18180 PF00781 Diacylglycerol kinase catalytic domain VV93_v1c18200 PF01734 Patatin-like phospholipase VV93_v1c18210 PF01966 HD domain VV93_v1c18240 PF03466 LysR substrate binding domain VV93_v1c18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c18250 PF04055 Radical SAM superfamily VV93_v1c18260 PF11230 Protein of unknown function (DUF3029) VV93_v1c18270 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c18270 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c18270 PF00563 EAL domain VV93_v1c18270 PF13188 PAS domain VV93_v1c18280 PF11871 Domain of unknown function (DUF3391) VV93_v1c18280 PF01966 HD domain VV93_v1c18310 PF00563 EAL domain VV93_v1c18310 PF05231 MASE1 VV93_v1c18320 PF17158 Membrane-associated sensor, integral membrane domain VV93_v1c18320 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c18340 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c18340 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c18340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c18350 PF00939 Sodium:sulfate symporter transmembrane region VV93_v1c18380 PF13302 Acetyltransferase (GNAT) domain VV93_v1c18390 PF00158 Sigma-54 interaction domain VV93_v1c18390 PF18024 Helix-turn-helix domain VV93_v1c18390 PF13188 PAS domain VV93_v1c18400 PF05128 Domain of unknown function (DUF697) VV93_v1c18410 PF04317 YcjX-like family, DUF463 VV93_v1c18440 PF00425 chorismate binding enzyme VV93_v1c18440 PF04715 Anthranilate synthase component I, N terminal region VV93_v1c18450 PF00072 Response regulator receiver domain VV93_v1c18450 PF09308 LuxQ, periplasmic VV93_v1c18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c18450 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c18470 PF00293 NUDIX domain VV93_v1c18480 PF03222 Tryptophan/tyrosine permease family VV93_v1c18490 PF03315 Serine dehydratase beta chain VV93_v1c18490 PF03313 Serine dehydratase alpha chain VV93_v1c18500 PF00563 EAL domain VV93_v1c18500 PF04940 Sensors of blue-light using FAD VV93_v1c18520 PF01242 6-pyruvoyl tetrahydropterin synthase VV93_v1c18530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c18530 PF00672 HAMP domain VV93_v1c18530 PF17200 Single Cache domain 2 VV93_v1c18540 PF00152 tRNA synthetases class II (D, K and N) VV93_v1c18540 PF01336 OB-fold nucleic acid binding domain VV93_v1c18560 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c18560 PF00155 Aminotransferase class I and II VV93_v1c18630 PF00155 Aminotransferase class I and II VV93_v1c18670 PF02743 Cache domain VV93_v1c18670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c18670 PF00672 HAMP domain VV93_v1c18680 PF02028 BCCT, betaine/carnitine/choline family transporter VV93_v1c18690 PF01047 MarR family VV93_v1c18700 PF00072 Response regulator receiver domain VV93_v1c18700 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c18710 PF17200 Single Cache domain 2 VV93_v1c18710 PF07730 Histidine kinase VV93_v1c18720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_v1c18740 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_v1c18770 PF00753 Metallo-beta-lactamase superfamily VV93_v1c18780 PF05951 Bacterial protein of unknown function (DUF882) VV93_v1c18790 PF01471 Putative peptidoglycan binding domain VV93_v1c18790 PF03734 L,D-transpeptidase catalytic domain VV93_v1c18840 PF00925 GTP cyclohydrolase II VV93_v1c18850 PF07840 FadR C-terminal domain VV93_v1c18850 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c18860 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VV93_v1c18870 PF02600 Disulfide bond formation protein DsbB VV93_v1c18880 PF01043 SecA preprotein cross-linking domain VV93_v1c18880 PF07517 SecA DEAD-like domain VV93_v1c18880 PF02810 SEC-C motif VV93_v1c18880 PF07516 SecA Wing and Scaffold domain VV93_v1c18890 PF01207 Dihydrouridine synthase (Dus) VV93_v1c18920 PF02903 Alpha amylase, N-terminal ig-like domain VV93_v1c18920 PF00128 Alpha amylase, catalytic domain VV93_v1c18930 PF00005 ABC transporter VV93_v1c18940 PF02653 Branched-chain amino acid transport system / permease component VV93_v1c18960 PF04217 Protein of unknown function, DUF412 VV93_v1c18970 PF00871 Acetokinase family VV93_v1c18980 PF07085 DRTGG domain VV93_v1c18980 PF01515 Phosphate acetyl/butaryl transferase VV93_v1c18990 PF01717 Cobalamin-independent synthase, Catalytic domain VV93_v1c18990 PF08267 Cobalamin-independent synthase, N-terminal domain VV93_v1c19000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c19000 PF03466 LysR substrate binding domain VV93_v1c19030 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c19030 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c19030 PF00563 EAL domain VV93_v1c19040 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c19040 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c19040 PF00563 EAL domain VV93_v1c19050 PF08497 Radical SAM N-terminal VV93_v1c19050 PF04055 Radical SAM superfamily VV93_v1c19050 PF11842 Domain of unknown function (DUF3362) VV93_v1c19060 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c19060 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c19060 PF00563 EAL domain VV93_v1c19080 PF00916 Sulfate permease family VV93_v1c19080 PF01740 STAS domain VV93_v1c19090 PF02311 AraC-like ligand binding domain VV93_v1c19090 PF12833 Helix-turn-helix domain VV93_v1c19140 PF03741 Integral membrane protein TerC family VV93_v1c19150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c19150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c19160 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c19170 PF00596 Class II Aldolase and Adducin N-terminal domain VV93_v1c19180 PF05025 RbsD / FucU transport protein family VV93_v1c19190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VV93_v1c19190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VV93_v1c19200 PF07882 L-fucose isomerase, second N-terminal domain VV93_v1c19200 PF07881 L-fucose isomerase, first N-terminal domain VV93_v1c19200 PF02952 L-fucose isomerase, C-terminal domain VV93_v1c19210 PF07690 Major Facilitator Superfamily VV93_v1c19220 PF08220 DeoR-like helix-turn-helix domain VV93_v1c19220 PF00455 DeoR C terminal sensor domain VV93_v1c19230 PF00672 HAMP domain VV93_v1c19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c19240 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c19270 PF04229 GrpB protein VV93_v1c19340 PF00270 DEAD/DEAH box helicase VV93_v1c19340 PF08148 DSHCT (NUC185) domain VV93_v1c19340 PF00271 Helicase conserved C-terminal domain VV93_v1c19350 PF13737 Transposase DDE domain VV93_v1c19400 PF13737 Transposase DDE domain VV93_v1c19410 PF00672 HAMP domain VV93_v1c19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c19410 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c19430 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c19430 PF00072 Response regulator receiver domain VV93_v1c19440 PF13737 Transposase DDE domain VV93_v1c19450 PF02371 Transposase IS116/IS110/IS902 family VV93_v1c19450 PF01548 Transposase VV93_v1c19480 PF04542 Sigma-70 region 2 VV93_v1c19480 PF08281 Sigma-70, region 4 VV93_v1c19490 PF17156 Gammaproteobacterial periplasmic sensor domain VV93_v1c19490 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c19500 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c19500 PF00114 Pilin (bacterial filament) VV93_v1c19510 PF02447 GntP family permease VV93_v1c19520 PF01261 Xylose isomerase-like TIM barrel VV93_v1c19530 PF00596 Class II Aldolase and Adducin N-terminal domain VV93_v1c19540 PF17042 Nucleotide-binding C-terminal domain VV93_v1c19540 PF07005 Sugar-binding N-terminal domain VV93_v1c19550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV93_v1c19550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_v1c19560 PF08220 DeoR-like helix-turn-helix domain VV93_v1c19560 PF00455 DeoR C terminal sensor domain VV93_v1c19590 PF04002 RadC-like JAB domain VV93_v1c19620 PF00075 RNase H VV93_v1c19700 PF00589 Phage integrase family VV93_v1c19700 PF13356 Arm DNA-binding domain VV93_v1c19720 PF02796 Helix-turn-helix domain of resolvase VV93_v1c19720 PF00239 Resolvase, N terminal domain VV93_v1c19750 PF06610 L-alanine exporter VV93_v1c19760 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c19760 PF09308 LuxQ, periplasmic VV93_v1c19760 PF00072 Response regulator receiver domain VV93_v1c19760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c19780 PF03738 Glutathionylspermidine synthase preATP-grasp VV93_v1c19800 PF03994 Domain of Unknown Function (DUF350) VV93_v1c19820 PF02445 Quinolinate synthetase A protein VV93_v1c19830 PF16331 TolA binding protein trimerisation VV93_v1c19830 PF13174 Tetratricopeptide repeat VV93_v1c19840 PF00691 OmpA family VV93_v1c19850 PF04052 TolB amino-terminal domain VV93_v1c19850 PF07676 WD40-like Beta Propeller Repeat VV93_v1c19870 PF02472 Biopolymer transport protein ExbD/TolR VV93_v1c19880 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c19890 PF03061 Thioesterase superfamily VV93_v1c19910 PF08173 Membrane bound YbgT-like protein VV93_v1c19920 PF02322 Cytochrome bd terminal oxidase subunit II VV93_v1c19930 PF01654 Cytochrome bd terminal oxidase subunit I VV93_v1c19940 PF05496 Holliday junction DNA helicase RuvB P-loop domain VV93_v1c19940 PF05491 RuvB C-terminal winged helix domain VV93_v1c19940 PF17864 RuvB AAA lid domain VV93_v1c19950 PF07499 RuvA, C-terminal domain VV93_v1c19950 PF01330 RuvA N terminal domain VV93_v1c19960 PF00672 HAMP domain VV93_v1c19960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c19960 PF02203 Tar ligand binding domain homologue VV93_v1c19970 PF02075 Crossover junction endodeoxyribonuclease RuvC VV93_v1c19980 PF02938 GAD domain VV93_v1c19980 PF00152 tRNA synthetases class II (D, K and N) VV93_v1c19980 PF01336 OB-fold nucleic acid binding domain VV93_v1c20000 PF13649 Methyltransferase domain VV93_v1c20010 PF08003 Protein of unknown function (DUF1698) VV93_v1c20020 PF18030 RimK PreATP-grasp domain VV93_v1c20020 PF08443 RimK-like ATP-grasp domain VV93_v1c20070 PF05199 GMC oxidoreductase VV93_v1c20070 PF00732 GMC oxidoreductase VV93_v1c20080 PF00171 Aldehyde dehydrogenase family VV93_v1c20090 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VV93_v1c20090 PF12833 Helix-turn-helix domain VV93_v1c20100 PF16330 MukB hinge domain VV93_v1c20100 PF04310 MukB N-terminal VV93_v1c20110 PF04288 MukE-like family VV93_v1c20120 PF17192 MukF middle domain VV93_v1c20120 PF17193 MukF C-terminal domain VV93_v1c20120 PF03882 MukF winged-helix domain VV93_v1c20140 PF02698 DUF218 domain VV93_v1c20150 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c20150 PF00072 Response regulator receiver domain VV93_v1c20160 PF02613 Nitrate reductase delta subunit VV93_v1c20170 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c20180 PF04994 TfoX C-terminal domain VV93_v1c20180 PF04993 TfoX N-terminal domain VV93_v1c20210 PF00561 alpha/beta hydrolase fold VV93_v1c20220 PF00534 Glycosyl transferases group 1 VV93_v1c20220 PF08323 Starch synthase catalytic domain VV93_v1c20230 PF00483 Nucleotidyl transferase VV93_v1c20240 PF01751 Toprim domain VV93_v1c20240 PF01396 Topoisomerase DNA binding C4 zinc finger VV93_v1c20240 PF01131 DNA topoisomerase VV93_v1c20240 PF08272 Topoisomerase I zinc-ribbon-like VV93_v1c20260 PF10692 Protein of unknown function (DUF2498) VV93_v1c20270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV93_v1c20290 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VV93_v1c20300 PF04376 Arginine-tRNA-protein transferase, N terminus VV93_v1c20300 PF04377 Arginine-tRNA-protein transferase, C terminus VV93_v1c20310 PF01176 Translation initiation factor 1A / IF-1 VV93_v1c20320 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_v1c20320 PF07724 AAA domain (Cdc48 subfamily) VV93_v1c20320 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c20320 PF17871 AAA lid domain VV93_v1c20320 PF02861 Clp amino terminal domain, pathogenicity island component VV93_v1c20330 PF02617 ATP-dependent Clp protease adaptor protein ClpS VV93_v1c20340 PF00313 'Cold-shock' DNA-binding domain VV93_v1c20350 PF03971 Monomeric isocitrate dehydrogenase VV93_v1c20360 PF00849 RNA pseudouridylate synthase VV93_v1c20370 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV93_v1c20380 PF13609 Gram-negative porin VV93_v1c20390 PF13307 Helicase C-terminal domain VV93_v1c20390 PF06733 DEAD_2 VV93_v1c20400 PF01925 Sulfite exporter TauE/SafE VV93_v1c20410 PF07445 Primosomal replication protein priC VV93_v1c20420 PF10689 Protein of unknown function (DUF2496) VV93_v1c20430 PF00672 HAMP domain VV93_v1c20430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c20430 PF02743 Cache domain VV93_v1c20440 PF03372 Endonuclease/Exonuclease/phosphatase family VV93_v1c20460 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c20470 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c20480 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c20490 PF00005 ABC transporter VV93_v1c20520 PF02901 Pyruvate formate lyase-like VV93_v1c20520 PF01228 Glycine radical VV93_v1c20540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c20540 PF00672 HAMP domain VV93_v1c20550 PF04055 Radical SAM superfamily VV93_v1c20570 PF03887 YfbU domain VV93_v1c20580 PF06629 MltA-interacting protein MipA VV93_v1c20590 PF08298 PrkA AAA domain VV93_v1c20590 PF06798 PrkA serine protein kinase C-terminal domain VV93_v1c20600 PF04285 Protein of unknown function (DUF444) VV93_v1c20610 PF04293 SpoVR like protein VV93_v1c20620 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c20620 PF17155 Gammaproteobacterial periplasmic sensor domain VV93_v1c20630 PF02348 Cytidylyltransferase VV93_v1c20640 PF03966 Trm112p-like protein VV93_v1c20650 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VV93_v1c20660 PF00664 ABC transporter transmembrane region VV93_v1c20660 PF00005 ABC transporter VV93_v1c20670 PF03772 Competence protein VV93_v1c20670 PF13567 Domain of unknown function (DUF4131) VV93_v1c20670 PF00753 Metallo-beta-lactamase superfamily VV93_v1c20690 PF12704 MacB-like periplasmic core domain VV93_v1c20690 PF02687 FtsX-like permease family VV93_v1c20700 PF00005 ABC transporter VV93_v1c20710 PF12704 MacB-like periplasmic core domain VV93_v1c20710 PF02687 FtsX-like permease family VV93_v1c20730 PF03461 TRCF domain VV93_v1c20730 PF00271 Helicase conserved C-terminal domain VV93_v1c20730 PF00270 DEAD/DEAH box helicase VV93_v1c20730 PF02559 CarD-like/TRCF domain VV93_v1c20730 PF17757 UvrB interaction domain VV93_v1c20760 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c20770 PF05728 Uncharacterised protein family (UPF0227) VV93_v1c20790 PF13036 Peptidoglycan-synthase activator LpoB VV93_v1c20790 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VV93_v1c20820 PF01230 HIT domain VV93_v1c20830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c20830 PF00672 HAMP domain VV93_v1c20850 PF01048 Phosphorylase superfamily VV93_v1c20860 PF00403 Heavy-metal-associated domain VV93_v1c20870 PF07085 DRTGG domain VV93_v1c20870 PF00571 CBS domain VV93_v1c20870 PF03061 Thioesterase superfamily VV93_v1c20870 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c20880 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c20890 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VV93_v1c20890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VV93_v1c20890 PF01276 Orn/Lys/Arg decarboxylase, major domain VV93_v1c20900 PF13520 Amino acid permease VV93_v1c20920 PF18500 CadC C-terminal domain 1 VV93_v1c20920 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c20940 PF00672 HAMP domain VV93_v1c20940 PF02743 Cache domain VV93_v1c20940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c20960 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c20970 PF01769 Divalent cation transporter VV93_v1c20970 PF03448 MgtE intracellular N domain VV93_v1c20970 PF00571 CBS domain VV93_v1c20980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VV93_v1c20980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VV93_v1c20990 PF13847 Methyltransferase domain VV93_v1c21020 PF00245 Alkaline phosphatase VV93_v1c21040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c21060 PF03692 Putative zinc- or iron-chelating domain VV93_v1c21070 PF03692 Putative zinc- or iron-chelating domain VV93_v1c21080 PF00230 Major intrinsic protein VV93_v1c21090 PF00072 Response regulator receiver domain VV93_v1c21090 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c21100 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c21100 PF00672 HAMP domain VV93_v1c21100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c21160 PF13662 Toprim domain VV93_v1c21160 PF02132 RecR protein VV93_v1c21170 PF02575 YbaB/EbfC DNA-binding family VV93_v1c21180 PF12169 DNA polymerase III subunits gamma and tau domain III VV93_v1c21180 PF12170 DNA polymerase III tau subunit V interacting with alpha VV93_v1c21180 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VV93_v1c21190 PF00156 Phosphoribosyl transferase domain VV93_v1c21210 PF00072 Response regulator receiver domain VV93_v1c21220 PF03466 LysR substrate binding domain VV93_v1c21220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c21230 PF00156 Phosphoribosyl transferase domain VV93_v1c21240 PF02674 Colicin V production protein VV93_v1c21250 PF05036 Sporulation related domain VV93_v1c21260 PF02875 Mur ligase family, glutamate ligase domain VV93_v1c21260 PF08245 Mur ligase middle domain VV93_v1c21270 PF17848 Acetyl-coA carboxylase zinc finger domain VV93_v1c21270 PF01039 Carboxyl transferase domain VV93_v1c21280 PF01416 tRNA pseudouridine synthase VV93_v1c21300 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_v1c21300 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_v1c21310 PF11890 Domain of unknown function (DUF3410) VV93_v1c21310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c21310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c21320 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_v1c21320 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_v1c21330 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c21330 PF01266 FAD dependent oxidoreductase VV93_v1c21340 PF08891 YfcL protein VV93_v1c21350 PF04315 Elongation factor P hydroxylase VV93_v1c21360 PF03458 UPF0126 domain VV93_v1c21370 PF01264 Chorismate synthase VV93_v1c21380 PF05175 Methyltransferase small domain VV93_v1c21390 PF01713 Smr domain VV93_v1c21400 PF00300 Histidine phosphatase superfamily (branch 1) VV93_v1c21410 PF05193 Peptidase M16 inactive domain VV93_v1c21410 PF00675 Insulinase (Peptidase family M16) VV93_v1c21430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV93_v1c21430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV93_v1c21430 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c21440 PF02803 Thiolase, C-terminal domain VV93_v1c21440 PF00108 Thiolase, N-terminal domain VV93_v1c21450 PF08281 Sigma-70, region 4 VV93_v1c21450 PF04542 Sigma-70 region 2 VV93_v1c21470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c21480 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c21490 PF04333 MlaA lipoprotein VV93_v1c21500 PF03918 Cytochrome C biogenesis protein VV93_v1c21510 PF03918 Cytochrome C biogenesis protein VV93_v1c21520 PF08534 Redoxin VV93_v1c21530 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV93_v1c21530 PF01578 Cytochrome C assembly protein VV93_v1c21540 PF03100 CcmE VV93_v1c21550 PF04995 Heme exporter protein D (CcmD) VV93_v1c21560 PF01578 Cytochrome C assembly protein VV93_v1c21570 PF03379 CcmB protein VV93_v1c21580 PF00005 ABC transporter VV93_v1c21600 PF01584 CheW-like domain VV93_v1c21620 PF13614 AAA domain VV93_v1c21630 PF01339 CheB methylesterase VV93_v1c21630 PF00072 Response regulator receiver domain VV93_v1c21640 PF07194 P2 response regulator binding domain VV93_v1c21640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c21640 PF01584 CheW-like domain VV93_v1c21640 PF01627 Hpt domain VV93_v1c21640 PF02895 Signal transducing histidine kinase, homodimeric domain VV93_v1c21650 PF04344 Chemotaxis phosphatase, CheZ VV93_v1c21660 PF00072 Response regulator receiver domain VV93_v1c21670 PF04542 Sigma-70 region 2 VV93_v1c21670 PF04545 Sigma-70, region 4 VV93_v1c21670 PF04539 Sigma-70 region 3 VV93_v1c21680 PF10609 NUBPL iron-transfer P-loop NTPase VV93_v1c21690 PF00448 SRP54-type protein, GTPase domain VV93_v1c21700 PF00771 FHIPEP family VV93_v1c21710 PF01312 FlhB HrpN YscU SpaS Family VV93_v1c21720 PF01311 Bacterial export proteins, family 1 VV93_v1c21730 PF01313 Bacterial export proteins, family 3 VV93_v1c21740 PF00813 FliP family VV93_v1c21750 PF04347 Flagellar biosynthesis protein, FliO VV93_v1c21760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV93_v1c21770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV93_v1c21770 PF02154 Flagellar motor switch protein FliM VV93_v1c21810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_v1c21810 PF18269 T3SS EscN ATPase C-terminal domain VV93_v1c21830 PF14842 FliG N-terminal domain VV93_v1c21830 PF01706 FliG C-terminal domain VV93_v1c21830 PF14841 FliG middle domain VV93_v1c21840 PF08345 Flagellar M-ring protein C-terminal VV93_v1c21840 PF01514 Secretory protein of YscJ/FliF family VV93_v1c21850 PF02049 Flagellar hook-basal body complex protein FliE VV93_v1c21860 PF00158 Sigma-54 interaction domain VV93_v1c21860 PF00072 Response regulator receiver domain VV93_v1c21860 PF02954 Bacterial regulatory protein, Fis family VV93_v1c21870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c21870 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c21880 PF02954 Bacterial regulatory protein, Fis family VV93_v1c21880 PF00072 Response regulator receiver domain VV93_v1c21880 PF00158 Sigma-54 interaction domain VV93_v1c21890 PF02561 Flagellar protein FliS VV93_v1c21910 PF07196 Flagellin hook IN motif VV93_v1c21910 PF02465 Flagellar hook-associated protein 2 N-terminus VV93_v1c21910 PF07195 Flagellar hook-associated protein 2 C-terminus VV93_v1c21920 PF03646 FlaG protein VV93_v1c21930 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c21930 PF07196 Flagellin hook IN motif VV93_v1c21930 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c21940 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c21940 PF07196 Flagellin hook IN motif VV93_v1c21940 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c21950 PF00700 Bacterial flagellin C-terminal helical region VV93_v1c21950 PF07196 Flagellin hook IN motif VV93_v1c21950 PF00669 Bacterial flagellin N-terminal helical region VV93_v1c21960 PF04261 Dyp-type peroxidase family VV93_v1c22010 PF03960 ArsC family VV93_v1c22020 PF07687 Peptidase dimerisation domain VV93_v1c22020 PF01546 Peptidase family M20/M25/M40 VV93_v1c22060 PF00701 Dihydrodipicolinate synthetase family VV93_v1c22070 PF01842 ACT domain VV93_v1c22080 PF00578 AhpC/TSA family VV93_v1c22130 PF00578 AhpC/TSA family VV93_v1c22160 PF10609 NUBPL iron-transfer P-loop NTPase VV93_v1c22190 PF13657 HipA N-terminal domain VV93_v1c22190 PF07804 HipA-like C-terminal domain VV93_v1c22300 PF00578 AhpC/TSA family VV93_v1c22310 PF01594 AI-2E family transporter VV93_v1c22330 PF13181 Tetratricopeptide repeat VV93_v1c22330 PF01435 Peptidase family M48 VV93_v1c22340 PF03960 ArsC family VV93_v1c22350 PF03358 NADPH-dependent FMN reductase VV93_v1c22380 PF00860 Permease family VV93_v1c22400 PF02769 AIR synthase related protein, C-terminal domain VV93_v1c22400 PF00586 AIR synthase related protein, N-terminal domain VV93_v1c22410 PF00551 Formyl transferase VV93_v1c22420 PF13230 Glutamine amidotransferases class-II VV93_v1c22430 PF13580 SIS domain VV93_v1c22440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_v1c22440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_v1c22440 PF09317 Domain of unknown function (DUF1974) VV93_v1c22440 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_v1c22470 PF02254 TrkA-N domain VV93_v1c22470 PF00999 Sodium/hydrogen exchanger family VV93_v1c22480 PF02525 Flavodoxin-like fold VV93_v1c22500 PF00929 Exonuclease VV93_v1c22510 PF00075 RNase H VV93_v1c22520 PF08241 Methyltransferase domain VV93_v1c22530 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV93_v1c22530 PF00753 Metallo-beta-lactamase superfamily VV93_v1c22540 PF01464 Transglycosylase SLT domain VV93_v1c22540 PF01476 LysM domain VV93_v1c22560 PF03372 Endonuclease/Exonuclease/phosphatase family VV93_v1c22570 PF00543 Nitrogen regulatory protein P-II VV93_v1c22580 PF00034 Cytochrome c VV93_v1c22590 PF01171 PP-loop family VV93_v1c22590 PF09179 TilS substrate binding domain VV93_v1c22590 PF11734 TilS substrate C-terminal domain VV93_v1c22600 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VV93_v1c22610 PF02811 PHP domain VV93_v1c22610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_v1c22610 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_v1c22610 PF01336 OB-fold nucleic acid binding domain VV93_v1c22610 PF14579 Helix-hairpin-helix motif VV93_v1c22620 PF01351 Ribonuclease HII VV93_v1c22630 PF02684 Lipid-A-disaccharide synthetase VV93_v1c22640 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VV93_v1c22640 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c22650 PF07977 FabA-like domain VV93_v1c22660 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c22660 PF14602 Hexapeptide repeat of succinyl-transferase VV93_v1c22660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VV93_v1c22670 PF03938 Outer membrane protein (OmpH-like) VV93_v1c22680 PF07244 Surface antigen variable number repeat VV93_v1c22680 PF01103 Surface antigen VV93_v1c22690 PF17820 PDZ domain VV93_v1c22690 PF02163 Peptidase family M50 VV93_v1c22700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VV93_v1c22700 PF13288 DXP reductoisomerase C-terminal domain VV93_v1c22700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VV93_v1c22720 PF01255 Putative undecaprenyl diphosphate synthase VV93_v1c22730 PF01765 Ribosome recycling factor VV93_v1c22740 PF00696 Amino acid kinase family VV93_v1c22750 PF00889 Elongation factor TS VV93_v1c22760 PF00318 Ribosomal protein S2 VV93_v1c22770 PF00557 Metallopeptidase family M24 VV93_v1c22780 PF01909 Nucleotidyltransferase domain VV93_v1c22780 PF01966 HD domain VV93_v1c22780 PF08335 GlnD PII-uridylyltransferase VV93_v1c22790 PF11944 Protein of unknown function (DUF3461) VV93_v1c22800 PF00849 RNA pseudouridylate synthase VV93_v1c22810 PF04287 tRNA pseudouridine synthase C VV93_v1c22860 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VV93_v1c22870 PF03806 AbgT putative transporter family VV93_v1c22880 PF01197 Ribosomal protein L31 VV93_v1c22890 PF01980 tRNA-methyltransferase O VV93_v1c22890 PF18389 TrmO C-terminal domain VV93_v1c22900 PF03129 Anticodon binding domain VV93_v1c22900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_v1c22900 PF04073 Aminoacyl-tRNA editing domain VV93_v1c22920 PF06786 Uncharacterised protein family (UPF0253) VV93_v1c22940 PF00209 Sodium:neurotransmitter symporter family VV93_v1c22960 PF00704 Glycosyl hydrolases family 18 VV93_v1c22960 PF00041 Fibronectin type III domain VV93_v1c22980 PF09382 RQC domain VV93_v1c22980 PF00270 DEAD/DEAH box helicase VV93_v1c22980 PF00271 Helicase conserved C-terminal domain VV93_v1c22980 PF16124 RecQ zinc-binding VV93_v1c22980 PF00570 HRDC domain VV93_v1c22990 PF00817 impB/mucB/samB family VV93_v1c22990 PF11799 impB/mucB/samB family C-terminal domain VV93_v1c23000 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c23000 PF00072 Response regulator receiver domain VV93_v1c23020 PF02424 ApbE family VV93_v1c23030 PF00970 Oxidoreductase FAD-binding domain VV93_v1c23030 PF00175 Oxidoreductase NAD-binding domain VV93_v1c23030 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c23040 PF02508 Rnf-Nqr subunit, membrane protein VV93_v1c23050 PF02508 Rnf-Nqr subunit, membrane protein VV93_v1c23060 PF04205 FMN-binding domain VV93_v1c23070 PF03116 NQR2, RnfD, RnfE family VV93_v1c23080 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VV93_v1c23080 PF11973 NQRA C-terminal domain VV93_v1c23090 PF01722 BolA-like protein VV93_v1c23100 PF05175 Methyltransferase small domain VV93_v1c23120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV93_v1c23130 PF07690 Major Facilitator Superfamily VV93_v1c23150 PF04542 Sigma-70 region 2 VV93_v1c23150 PF04545 Sigma-70, region 4 VV93_v1c23170 PF03502 Nucleoside-specific channel-forming protein, Tsx VV93_v1c23180 PF08546 Ketopantoate reductase PanE/ApbA C terminal VV93_v1c23180 PF02558 Ketopantoate reductase PanE/ApbA VV93_v1c23190 PF01965 DJ-1/PfpI family VV93_v1c23200 PF00266 Aminotransferase class-V VV93_v1c23220 PF02657 Fe-S metabolism associated domain VV93_v1c23230 PF00899 ThiF family VV93_v1c23240 PF03562 MltA specific insert domain VV93_v1c23240 PF06725 3D domain VV93_v1c23260 PF00696 Amino acid kinase family VV93_v1c23260 PF00583 Acetyltransferase (GNAT) family VV93_v1c23280 PF13538 UvrD-like helicase C-terminal domain VV93_v1c23290 PF00580 UvrD/REP helicase N-terminal domain VV93_v1c23290 PF13361 UvrD-like helicase C-terminal domain VV93_v1c23290 PF12705 PD-(D/E)XK nuclease superfamily VV93_v1c23300 PF17946 RecC C-terminal domain VV93_v1c23310 PF11893 Domain of unknown function (DUF3413) VV93_v1c23310 PF00884 Sulfatase VV93_v1c23330 PF03466 LysR substrate binding domain VV93_v1c23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c23340 PF07130 YebG protein VV93_v1c23360 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VV93_v1c23360 PF14602 Hexapeptide repeat of succinyl-transferase VV93_v1c23370 PF00230 Major intrinsic protein VV93_v1c23380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VV93_v1c23380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VV93_v1c23410 PF00455 DeoR C terminal sensor domain VV93_v1c23410 PF08220 DeoR-like helix-turn-helix domain VV93_v1c23420 PF01266 FAD dependent oxidoreductase VV93_v1c23420 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VV93_v1c23430 PF01544 CorA-like Mg2+ transporter protein VV93_v1c23440 PF00583 Acetyltransferase (GNAT) family VV93_v1c23450 PF02080 TrkA-C domain VV93_v1c23450 PF18030 RimK PreATP-grasp domain VV93_v1c23450 PF08443 RimK-like ATP-grasp domain VV93_v1c23480 PF01588 Putative tRNA binding domain VV93_v1c23490 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c23500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c23500 PF00672 HAMP domain VV93_v1c23500 PF17200 Single Cache domain 2 VV93_v1c23530 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c23540 PF01263 Aldose 1-epimerase VV93_v1c23550 PF08544 GHMP kinases C terminal VV93_v1c23550 PF00288 GHMP kinases N terminal domain VV93_v1c23550 PF10509 Galactokinase galactose-binding signature VV93_v1c23560 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VV93_v1c23560 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VV93_v1c23570 PF16363 GDP-mannose 4,6 dehydratase VV93_v1c23580 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c23600 PF02929 Beta galactosidase small chain VV93_v1c23600 PF00703 Glycosyl hydrolases family 2 VV93_v1c23600 PF16353 Domain of unknown function(DUF4981) VV93_v1c23600 PF02837 Glycosyl hydrolases family 2, sugar binding domain VV93_v1c23600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VV93_v1c23610 PF04074 YhcH/YjgK/YiaL VV93_v1c23620 PF13520 Amino acid permease VV93_v1c23630 PF13520 Amino acid permease VV93_v1c23640 PF01204 Trehalase VV93_v1c23660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c23660 PF03466 LysR substrate binding domain VV93_v1c23670 PF02417 Chromate transporter VV93_v1c23710 PF00437 Type II/IV secretion system protein VV93_v1c23770 PF00263 Bacterial type II and III secretion system protein VV93_v1c23770 PF04972 BON domain VV93_v1c23770 PF13629 Pilus formation protein N terminal region VV93_v1c23830 PF02311 AraC-like ligand binding domain VV93_v1c23830 PF12833 Helix-turn-helix domain VV93_v1c23840 PF00501 AMP-binding enzyme VV93_v1c23860 PF03466 LysR substrate binding domain VV93_v1c23860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c23890 PF03144 Elongation factor Tu domain 2 VV93_v1c23890 PF00009 Elongation factor Tu GTP binding domain VV93_v1c23890 PF03764 Elongation factor G, domain IV VV93_v1c23890 PF14492 Elongation Factor G, domain II VV93_v1c23890 PF00679 Elongation factor G C-terminus VV93_v1c23920 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c23920 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c23920 PF00563 EAL domain VV93_v1c23930 PF18073 Rubredoxin metal binding domain VV93_v1c23950 PF18429 Domain of unknown function (DUF5609) VV93_v1c23970 PF01048 Phosphorylase superfamily VV93_v1c23980 PF01676 Metalloenzyme superfamily VV93_v1c23990 PF02885 Glycosyl transferase family, helical bundle domain VV93_v1c23990 PF00591 Glycosyl transferase family, a/b domain VV93_v1c23990 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VV93_v1c24000 PF01791 DeoC/LacD family aldolase VV93_v1c24010 PF07670 Nucleoside recognition VV93_v1c24010 PF01773 Na+ dependent nucleoside transporter N-terminus VV93_v1c24010 PF07662 Na+ dependent nucleoside transporter C-terminus VV93_v1c24020 PF01026 TatD related DNase VV93_v1c24040 PF00009 Elongation factor Tu GTP binding domain VV93_v1c24040 PF03144 Elongation factor Tu domain 2 VV93_v1c24040 PF16658 Class II release factor RF3, C-terminal domain VV93_v1c24050 PF08448 PAS fold VV93_v1c24050 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c24060 PF00563 EAL domain VV93_v1c24060 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c24060 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c24070 PF00583 Acetyltransferase (GNAT) family VV93_v1c24090 PF13508 Acetyltransferase (GNAT) domain VV93_v1c24110 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c24110 PF00563 EAL domain VV93_v1c24110 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c24140 PF01554 MatE VV93_v1c24160 PF13181 Tetratricopeptide repeat VV93_v1c24160 PF07719 Tetratricopeptide repeat VV93_v1c24170 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VV93_v1c24170 PF00575 S1 RNA binding domain VV93_v1c24170 PF03725 3' exoribonuclease family, domain 2 VV93_v1c24170 PF00013 KH domain VV93_v1c24170 PF01138 3' exoribonuclease family, domain 1 VV93_v1c24220 PF00312 Ribosomal protein S15 VV93_v1c24230 PF09157 Pseudouridine synthase II TruB, C-terminal VV93_v1c24230 PF16198 tRNA pseudouridylate synthase B C-terminal domain VV93_v1c24230 PF01509 TruB family pseudouridylate synthase (N terminal domain) VV93_v1c24240 PF02033 Ribosome-binding factor A VV93_v1c24250 PF00009 Elongation factor Tu GTP binding domain VV93_v1c24250 PF04760 Translation initiation factor IF-2, N-terminal region VV93_v1c24250 PF08364 Bacterial translation initiation factor IF-2 associated region VV93_v1c24250 PF11987 Translation-initiation factor 2 VV93_v1c24260 PF00575 S1 RNA binding domain VV93_v1c24260 PF08529 NusA N-terminal domain VV93_v1c24260 PF13184 NusA-like KH domain VV93_v1c24270 PF17384 RimP C-terminal SH3 domain VV93_v1c24270 PF02576 RimP N-terminal domain VV93_v1c24280 PF03840 Preprotein translocase SecG subunit VV93_v1c24290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_v1c24290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_v1c24290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_v1c24290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_v1c24300 PF00809 Pterin binding enzyme VV93_v1c24310 PF01434 Peptidase family M41 VV93_v1c24310 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c24310 PF17862 AAA+ lid domain VV93_v1c24310 PF06480 FtsH Extracellular VV93_v1c24320 PF01728 FtsJ-like methyltransferase VV93_v1c24330 PF01985 CRS1 / YhbY (CRM) domain VV93_v1c24340 PF03449 Transcription elongation factor, N-terminal VV93_v1c24340 PF01272 Transcription elongation factor, GreA/GreB, C-term VV93_v1c24350 PF13609 Gram-negative porin VV93_v1c24360 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VV93_v1c24370 PF04304 Protein of unknown function (DUF454) VV93_v1c24380 PF00579 tRNA synthetases class I (W and Y) VV93_v1c24390 PF01551 Peptidase family M23 VV93_v1c24390 PF04225 Opacity-associated protein A LysM-like domain VV93_v1c24400 PF00873 AcrB/AcrD/AcrF family VV93_v1c24410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c24420 PF01521 Iron-sulphur cluster biosynthesis VV93_v1c24430 PF00202 Aminotransferase class-III VV93_v1c24440 PF01594 AI-2E family transporter VV93_v1c24450 PF05175 Methyltransferase small domain VV93_v1c24450 PF08468 Methyltransferase small domain N-terminal VV93_v1c24460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c24460 PF09308 LuxQ, periplasmic VV93_v1c24460 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c24460 PF00072 Response regulator receiver domain VV93_v1c24470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c24480 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c24490 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c24490 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c24500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c24500 PF00005 ABC transporter VV93_v1c24510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c24510 PF00005 ABC transporter VV93_v1c24530 PF01869 BadF/BadG/BcrA/BcrD ATPase family VV93_v1c24540 PF02838 Glycosyl hydrolase family 20, domain 2 VV93_v1c24540 PF00728 Glycosyl hydrolase family 20, catalytic domain VV93_v1c24550 PF06165 Glycosyltransferase family 36 VV93_v1c24550 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VV93_v1c24560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_v1c24560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_v1c24560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_v1c24560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_v1c24570 PF00005 ABC transporter VV93_v1c24570 PF08402 TOBE domain VV93_v1c24590 PF13416 Bacterial extracellular solute-binding protein VV93_v1c24600 PF00909 Ammonium Transporter Family VV93_v1c24610 PF00543 Nitrogen regulatory protein P-II VV93_v1c24620 PF06062 Uncharacterised protein family (UPF0231) VV93_v1c24630 PF17853 GGDEF-like domain VV93_v1c24630 PF05651 Putative sugar diacid recognition VV93_v1c24630 PF13556 PucR C-terminal helix-turn-helix domain VV93_v1c24640 PF02447 GntP family permease VV93_v1c24650 PF02595 Glycerate kinase family VV93_v1c24660 PF00330 Aconitase family (aconitate hydratase) VV93_v1c24660 PF11791 Aconitate B N-terminal domain VV93_v1c24660 PF06434 Aconitate hydratase 2 N-terminus VV93_v1c24670 PF01734 Patatin-like phospholipase VV93_v1c24680 PF00905 Penicillin binding protein transpeptidase domain VV93_v1c24680 PF00912 Transglycosylase VV93_v1c24680 PF14814 Bifunctional transglycosylase second domain VV93_v1c24690 PF08482 ATP-dependent helicase C-terminal VV93_v1c24690 PF00271 Helicase conserved C-terminal domain VV93_v1c24690 PF04408 Helicase associated domain (HA2) VV93_v1c24690 PF00270 DEAD/DEAH box helicase VV93_v1c24700 PF17746 SfsA N-terminal OB domain VV93_v1c24700 PF03749 Sugar fermentation stimulation protein RE domain VV93_v1c24710 PF01258 Prokaryotic dksA/traR C4-type zinc finger VV93_v1c24720 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_v1c24730 PF01743 Poly A polymerase head domain VV93_v1c24730 PF12626 Polymerase A arginine-rich C-terminus VV93_v1c24730 PF12627 Probable RNA and SrmB- binding site of polymerase A VV93_v1c24740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV93_v1c24750 PF02548 Ketopantoate hydroxymethyltransferase VV93_v1c24760 PF02569 Pantoate-beta-alanine ligase VV93_v1c24770 PF01061 ABC-2 type transporter VV93_v1c24780 PF00005 ABC transporter VV93_v1c24790 PF00916 Sulfate permease family VV93_v1c24790 PF01740 STAS domain VV93_v1c24800 PF00484 Carbonic anhydrase VV93_v1c24810 PF00156 Phosphoribosyl transferase domain VV93_v1c24820 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c24830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_v1c24830 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c24840 PF02817 e3 binding domain VV93_v1c24840 PF00364 Biotin-requiring enzyme VV93_v1c24840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV93_v1c24850 PF00456 Transketolase, thiamine diphosphate binding domain VV93_v1c24850 PF17831 Pyruvate dehydrogenase E1 component middle domain VV93_v1c24860 PF07729 FCD domain VV93_v1c24860 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c24870 PF01510 N-acetylmuramoyl-L-alanine amidase VV93_v1c24880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VV93_v1c24880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VV93_v1c24890 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c24890 PF00114 Pilin (bacterial filament) VV93_v1c24900 PF00437 Type II/IV secretion system protein VV93_v1c24900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV93_v1c24910 PF00482 Type II secretion system (T2SS), protein F VV93_v1c24920 PF06750 Bacterial Peptidase A24 N-terminal domain VV93_v1c24920 PF01478 Type IV leader peptidase family VV93_v1c24930 PF01121 Dephospho-CoA kinase VV93_v1c24940 PF07072 Cell division protein VV93_v1c24950 PF03884 DNA gyrase inhibitor YacG VV93_v1c24960 PF01245 Ribosomal protein L19 VV93_v1c24970 PF01746 tRNA (Guanine-1)-methyltransferase VV93_v1c24980 PF01782 RimM N-terminal domain VV93_v1c24980 PF05239 PRC-barrel domain VV93_v1c24990 PF00886 Ribosomal protein S16 VV93_v1c25000 PF00448 SRP54-type protein, GTPase domain VV93_v1c25000 PF02881 SRP54-type protein, helical bundle domain VV93_v1c25000 PF02978 Signal peptide binding domain VV93_v1c25010 PF01578 Cytochrome C assembly protein VV93_v1c25020 PF01595 Cyclin M transmembrane N-terminal domain VV93_v1c25020 PF00571 CBS domain VV93_v1c25020 PF03471 Transporter associated domain VV93_v1c25030 PF02664 S-Ribosylhomocysteinase (LuxS) VV93_v1c25050 PF04262 Glutamate-cysteine ligase VV93_v1c25060 PF05193 Peptidase M16 inactive domain VV93_v1c25060 PF00675 Insulinase (Peptidase family M16) VV93_v1c25070 PF09335 SNARE associated Golgi protein VV93_v1c25080 PF08240 Alcohol dehydrogenase GroES-like domain VV93_v1c25080 PF00107 Zinc-binding dehydrogenase VV93_v1c25090 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VV93_v1c25100 PF02436 Conserved carboxylase domain VV93_v1c25100 PF00682 HMGL-like VV93_v1c25100 PF00364 Biotin-requiring enzyme VV93_v1c25110 PF04277 Oxaloacetate decarboxylase, gamma chain VV93_v1c25120 PF02599 Global regulator protein family VV93_v1c25130 PF13840 ACT domain VV93_v1c25130 PF00696 Amino acid kinase family VV93_v1c25130 PF01842 ACT domain VV93_v1c25140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV93_v1c25140 PF02272 DHHA1 domain VV93_v1c25140 PF01411 tRNA synthetases class II (A) VV93_v1c25150 PF02631 RecX family VV93_v1c25160 PF00154 recA bacterial DNA recombination protein VV93_v1c25170 PF02464 Competence-damaged protein VV93_v1c25180 PF05192 MutS domain III VV93_v1c25180 PF05188 MutS domain II VV93_v1c25180 PF05190 MutS family domain IV VV93_v1c25180 PF00488 MutS domain V VV93_v1c25180 PF01624 MutS domain I VV93_v1c25190 PF00140 Sigma-70 factor, region 1.2 VV93_v1c25190 PF04545 Sigma-70, region 4 VV93_v1c25190 PF04539 Sigma-70 region 3 VV93_v1c25190 PF04542 Sigma-70 region 2 VV93_v1c25200 PF01551 Peptidase family M23 VV93_v1c25200 PF01476 LysM domain VV93_v1c25220 PF01975 Survival protein SurE VV93_v1c25230 PF01142 tRNA pseudouridine synthase D (TruD) VV93_v1c25240 PF02542 YgbB family VV93_v1c25250 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VV93_v1c25260 PF04977 Septum formation initiator VV93_v1c25270 PF03952 Enolase, N-terminal domain VV93_v1c25270 PF00113 Enolase, C-terminal TIM barrel domain VV93_v1c25280 PF06418 CTP synthase N-terminus VV93_v1c25280 PF00117 Glutamine amidotransferase class-I VV93_v1c25290 PF03819 MazG nucleotide pyrophosphohydrolase domain VV93_v1c25300 PF13291 ACT domain VV93_v1c25300 PF04607 Region found in RelA / SpoT proteins VV93_v1c25300 PF02824 TGS domain VV93_v1c25310 PF05958 tRNA (Uracil-5-)-methyltransferase VV93_v1c25310 PF01938 TRAM domain VV93_v1c25320 PF00672 HAMP domain VV93_v1c25320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c25320 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c25320 PF01627 Hpt domain VV93_v1c25320 PF00072 Response regulator receiver domain VV93_v1c25320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c25330 PF00563 EAL domain VV93_v1c25330 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c25330 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c25360 PF01648 4'-phosphopantetheinyl transferase superfamily VV93_v1c25370 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VV93_v1c25380 PF02565 Recombination protein O C terminal VV93_v1c25380 PF11967 Recombination protein O N terminal VV93_v1c25390 PF07650 KH domain VV93_v1c25390 PF01926 50S ribosome-binding GTPase VV93_v1c25400 PF00035 Double-stranded RNA binding motif VV93_v1c25400 PF14622 Ribonuclease-III-like VV93_v1c25410 PF10502 Signal peptidase, peptidase S26 VV93_v1c25420 PF00679 Elongation factor G C-terminus VV93_v1c25420 PF03144 Elongation factor Tu domain 2 VV93_v1c25420 PF06421 GTP-binding protein LepA C-terminus VV93_v1c25420 PF00009 Elongation factor Tu GTP binding domain VV93_v1c25440 PF03888 MucB/RseB N-terminal domain VV93_v1c25440 PF17188 MucB/RseB C-terminal domain VV93_v1c25450 PF03873 Anti sigma-E protein RseA, C-terminal domain VV93_v1c25450 PF03872 Anti sigma-E protein RseA, N-terminal domain VV93_v1c25460 PF08281 Sigma-70, region 4 VV93_v1c25460 PF04542 Sigma-70 region 2 VV93_v1c25470 PF00890 FAD binding domain VV93_v1c25470 PF02910 Fumarate reductase flavoprotein C-term VV93_v1c25490 PF03937 Flavinator of succinate dehydrogenase VV93_v1c25500 PF01571 Aminomethyltransferase folate-binding domain VV93_v1c25530 PF01494 FAD binding domain VV93_v1c25540 PF01494 FAD binding domain VV93_v1c25550 PF03695 Uncharacterised protein family (UPF0149) VV93_v1c25560 PF05164 Cell division protein ZapA VV93_v1c25570 PF01812 5-formyltetrahydrofolate cyclo-ligase family VV93_v1c25580 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VV93_v1c25590 PF01842 ACT domain VV93_v1c25590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c25590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c25610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c25610 PF03466 LysR substrate binding domain VV93_v1c25620 PF01810 LysE type translocator VV93_v1c25630 PF00924 Mechanosensitive ion channel VV93_v1c25630 PF05552 Conserved TM helix VV93_v1c25640 PF01116 Fructose-bisphosphate aldolase class-II VV93_v1c25650 PF00162 Phosphoglycerate kinase VV93_v1c25660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_v1c25660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_v1c25680 PF02780 Transketolase, C-terminal domain VV93_v1c25680 PF02779 Transketolase, pyrimidine binding domain VV93_v1c25680 PF00456 Transketolase, thiamine diphosphate binding domain VV93_v1c25690 PF02772 S-adenosylmethionine synthetase, central domain VV93_v1c25690 PF00438 S-adenosylmethionine synthetase, N-terminal domain VV93_v1c25690 PF02773 S-adenosylmethionine synthetase, C-terminal domain VV93_v1c25710 PF10263 SprT-like family VV93_v1c25710 PF17283 SprT-like zinc ribbon domain VV93_v1c25720 PF04231 Endonuclease I VV93_v1c25740 PF04452 RNA methyltransferase VV93_v1c25750 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VV93_v1c25750 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VV93_v1c25760 PF02622 Uncharacterized ACR, COG1678 VV93_v1c25770 PF03652 Holliday junction resolvase VV93_v1c25780 PF00437 Type II/IV secretion system protein VV93_v1c25790 PF00437 Type II/IV secretion system protein VV93_v1c25800 PF01168 Alanine racemase, N-terminal domain VV93_v1c25810 PF14748 Pyrroline-5-carboxylate reductase dimerisation VV93_v1c25810 PF03807 NADP oxidoreductase coenzyme F420-dependent VV93_v1c25820 PF02325 YGGT family VV93_v1c25830 PF02594 Uncharacterised ACR, YggU family COG1872 VV93_v1c25850 PF01725 Ham1 family VV93_v1c25860 PF06969 HemN C-terminal domain VV93_v1c25860 PF04055 Radical SAM superfamily VV93_v1c25880 PF04960 Glutaminase VV93_v1c25890 PF02390 Putative methyltransferase VV93_v1c25900 PF00730 HhH-GPD superfamily base excision DNA repair protein VV93_v1c25900 PF14815 NUDIX domain VV93_v1c25900 PF00633 Helix-hairpin-helix motif VV93_v1c25910 PF04362 Bacterial Fe(2+) trafficking VV93_v1c25920 PF01464 Transglycosylase SLT domain VV93_v1c25920 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VV93_v1c25930 PF17200 Single Cache domain 2 VV93_v1c25930 PF00672 HAMP domain VV93_v1c25930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c26000 PF00072 Response regulator receiver domain VV93_v1c26020 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c26030 PF04794 YdjC-like protein VV93_v1c26040 PF11975 Family 4 glycosyl hydrolase C-terminal domain VV93_v1c26040 PF02056 Family 4 glycosyl hydrolase VV93_v1c26050 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VV93_v1c26060 PF02378 Phosphotransferase system, EIIC VV93_v1c26070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_v1c26080 PF01522 Polysaccharide deacetylase VV93_v1c26260 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c26260 PF00589 Phage integrase family VV93_v1c26290 PF03739 Lipopolysaccharide export system permease LptF/LptG VV93_v1c26300 PF03739 Lipopolysaccharide export system permease LptF/LptG VV93_v1c26310 PF00883 Cytosol aminopeptidase family, catalytic domain VV93_v1c26310 PF02789 Cytosol aminopeptidase family, N-terminal domain VV93_v1c26320 PF01609 Transposase DDE domain VV93_v1c26320 PF13006 Insertion element 4 transposase N-terminal VV93_v1c26330 PF04364 DNA polymerase III chi subunit, HolC VV93_v1c26340 PF00133 tRNA synthetases class I (I, L, M and V) VV93_v1c26340 PF10458 Valyl tRNA synthetase tRNA binding arm VV93_v1c26340 PF08264 Anticodon-binding domain of tRNA VV93_v1c26360 PF05987 Bacterial protein of unknown function (DUF898) VV93_v1c26380 PF00583 Acetyltransferase (GNAT) family VV93_v1c26400 PF06877 Regulator of ribonuclease activity B VV93_v1c26420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV93_v1c26420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV93_v1c26430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV93_v1c26430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV93_v1c26440 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VV93_v1c26440 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VV93_v1c26450 PF01042 Endoribonuclease L-PSP VV93_v1c26460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c26460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c26470 PF00849 RNA pseudouridylate synthase VV93_v1c26480 PF00176 SNF2 family N-terminal domain VV93_v1c26480 PF18339 RapA N-terminal Tudor like domain 1 VV93_v1c26480 PF18337 RapA N-terminal Tudor like domain VV93_v1c26480 PF00271 Helicase conserved C-terminal domain VV93_v1c26480 PF12137 RNA polymerase recycling family C-terminal VV93_v1c26490 PF13638 PIN domain VV93_v1c26490 PF02562 PhoH-like protein VV93_v1c26500 PF01523 Putative modulator of DNA gyrase VV93_v1c26510 PF00795 Carbon-nitrogen hydrolase VV93_v1c26520 PF13502 AsmA-like C-terminal region VV93_v1c26520 PF13116 Protein of unknown function VV93_v1c26530 PF00575 S1 RNA binding domain VV93_v1c26530 PF10150 Ribonuclease E/G family VV93_v1c26540 PF02545 Maf-like protein VV93_v1c26550 PF04093 rod shape-determining protein MreD VV93_v1c26560 PF04085 rod shape-determining protein MreC VV93_v1c26640 PF00114 Pilin (bacterial filament) VV93_v1c26640 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c26660 PF00482 Type II secretion system (T2SS), protein F VV93_v1c26670 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV93_v1c26670 PF00437 Type II/IV secretion system protein VV93_v1c26690 PF01471 Putative peptidoglycan binding domain VV93_v1c26690 PF13401 AAA domain VV93_v1c26700 PF00263 Bacterial type II and III secretion system protein VV93_v1c26700 PF11741 AMIN domain VV93_v1c26700 PF07660 Secretin and TonB N terminus short domain VV93_v1c26700 PF03958 Bacterial type II/III secretion system short domain VV93_v1c26740 PF00563 EAL domain VV93_v1c26740 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c26740 PF17157 Gammaproteobacterial periplasmic sensor domain VV93_v1c26750 PF00436 Single-strand binding protein family VV93_v1c26760 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c26770 PF00483 Nucleotidyl transferase VV93_v1c26780 PF00005 ABC transporter VV93_v1c26780 PF17760 UvrA interaction domain VV93_v1c26780 PF17755 UvrA DNA-binding domain VV93_v1c26800 PF00266 Aminotransferase class-V VV93_v1c26810 PF00696 Amino acid kinase family VV93_v1c26810 PF01842 ACT domain VV93_v1c26820 PF02574 Homocysteine S-methyltransferase VV93_v1c26820 PF02965 Vitamin B12 dependent methionine synthase, activation domain VV93_v1c26820 PF02607 B12 binding domain VV93_v1c26820 PF00809 Pterin binding enzyme VV93_v1c26820 PF02310 B12 binding domain VV93_v1c26830 PF00999 Sodium/hydrogen exchanger family VV93_v1c26840 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c26840 PF00072 Response regulator receiver domain VV93_v1c26950 PF01507 Phosphoadenosine phosphosulfate reductase family VV93_v1c26960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV93_v1c26960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV93_v1c26970 PF00175 Oxidoreductase NAD-binding domain VV93_v1c26970 PF00258 Flavodoxin VV93_v1c26970 PF00667 FAD binding domain VV93_v1c27010 PF01207 Dihydrouridine synthase (Dus) VV93_v1c27020 PF01475 Ferric uptake regulator family VV93_v1c27040 PF00342 Phosphoglucose isomerase VV93_v1c27050 PF01894 Uncharacterised protein family UPF0047 VV93_v1c27070 PF01168 Alanine racemase, N-terminal domain VV93_v1c27070 PF00842 Alanine racemase, C-terminal domain VV93_v1c27080 PF03796 DnaB-like helicase C terminal domain VV93_v1c27080 PF00772 DnaB-like helicase N terminal domain VV93_v1c27100 PF03948 Ribosomal protein L9, C-terminal domain VV93_v1c27100 PF01281 Ribosomal protein L9, N-terminal domain VV93_v1c27110 PF01084 Ribosomal protein S18 VV93_v1c27120 PF00436 Single-strand binding protein family VV93_v1c27130 PF01250 Ribosomal protein S6 VV93_v1c27140 PF00834 Ribulose-phosphate 3 epimerase family VV93_v1c27150 PF02086 D12 class N6 adenine-specific DNA methyltransferase VV93_v1c27170 PF01761 3-dehydroquinate synthase VV93_v1c27180 PF01202 Shikimate kinase VV93_v1c27190 PF07660 Secretin and TonB N terminus short domain VV93_v1c27190 PF03958 Bacterial type II/III secretion system short domain VV93_v1c27190 PF00263 Bacterial type II and III secretion system protein VV93_v1c27190 PF11741 AMIN domain VV93_v1c27240 PF00905 Penicillin binding protein transpeptidase domain VV93_v1c27240 PF17092 Penicillin-binding protein OB-like domain VV93_v1c27240 PF00912 Transglycosylase VV93_v1c27250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c27250 PF03466 LysR substrate binding domain VV93_v1c27270 PF00583 Acetyltransferase (GNAT) family VV93_v1c27270 PF14698 Argininosuccinate lyase C-terminal VV93_v1c27270 PF00206 Lyase VV93_v1c27280 PF00764 Arginosuccinate synthase VV93_v1c27290 PF00696 Amino acid kinase family VV93_v1c27300 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_v1c27300 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_v1c27310 PF07687 Peptidase dimerisation domain VV93_v1c27310 PF01546 Peptidase family M20/M25/M40 VV93_v1c27320 PF00311 Phosphoenolpyruvate carboxylase VV93_v1c27340 PF02219 Methylenetetrahydrofolate reductase VV93_v1c27350 PF00696 Amino acid kinase family VV93_v1c27350 PF00742 Homoserine dehydrogenase VV93_v1c27350 PF03447 Homoserine dehydrogenase, NAD binding domain VV93_v1c27360 PF01053 Cys/Met metabolism PLP-dependent enzyme VV93_v1c27370 PF01340 Met Apo-repressor, MetJ VV93_v1c27380 PF03949 Malic enzyme, NAD binding domain VV93_v1c27380 PF00390 Malic enzyme, N-terminal domain VV93_v1c27390 PF01197 Ribosomal protein L31 VV93_v1c27400 PF00271 Helicase conserved C-terminal domain VV93_v1c27400 PF18074 Primosomal protein N C-terminal domain VV93_v1c27400 PF17764 3′ DNA-binding domain (3′BD) VV93_v1c27400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VV93_v1c27400 PF00270 DEAD/DEAH box helicase VV93_v1c27410 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c27430 PF00227 Proteasome subunit VV93_v1c27440 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c27440 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_v1c27440 PF07724 AAA domain (Cdc48 subfamily) VV93_v1c27450 PF01040 UbiA prenyltransferase family VV93_v1c27460 PF03737 Aldolase/RraA VV93_v1c27470 PF06005 Cell division protein ZapB VV93_v1c27480 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VV93_v1c27530 PF00121 Triosephosphate isomerase VV93_v1c27540 PF16363 GDP-mannose 4,6 dehydratase VV93_v1c27550 PF00210 Ferritin-like domain VV93_v1c27560 PF04324 BFD-like [2Fe-2S] binding domain VV93_v1c27570 PF03143 Elongation factor Tu C-terminal domain VV93_v1c27570 PF00009 Elongation factor Tu GTP binding domain VV93_v1c27570 PF03144 Elongation factor Tu domain 2 VV93_v1c27580 PF03764 Elongation factor G, domain IV VV93_v1c27580 PF14492 Elongation Factor G, domain II VV93_v1c27580 PF00679 Elongation factor G C-terminus VV93_v1c27580 PF00009 Elongation factor Tu GTP binding domain VV93_v1c27580 PF03144 Elongation factor Tu domain 2 VV93_v1c27590 PF00177 Ribosomal protein S7p/S5e VV93_v1c27600 PF00164 Ribosomal protein S12/S23 VV93_v1c27620 PF02635 DsrE/DsrF-like family VV93_v1c27630 PF02635 DsrE/DsrF-like family VV93_v1c27640 PF08348 YheO-like PAS domain VV93_v1c27640 PF13309 HTH domain VV93_v1c27650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c27650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV93_v1c27670 PF04102 SlyX VV93_v1c27680 PF01112 Asparaginase VV93_v1c27690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c27710 PF00999 Sodium/hydrogen exchanger family VV93_v1c27710 PF02254 TrkA-N domain VV93_v1c27720 PF02525 Flavodoxin-like fold VV93_v1c27730 PF12848 ABC transporter VV93_v1c27730 PF00005 ABC transporter VV93_v1c27750 PF00561 alpha/beta hydrolase fold VV93_v1c27760 PF06794 Uncharacterised protein family (UPF0270) VV93_v1c27770 PF00485 Phosphoribulokinase / Uridine kinase family VV93_v1c27780 PF00027 Cyclic nucleotide-binding domain VV93_v1c27780 PF13545 Crp-like helix-turn-helix domain VV93_v1c27800 PF00171 Aldehyde dehydrogenase family VV93_v1c27810 PF04958 Arginine N-succinyltransferase beta subunit VV93_v1c27820 PF00202 Aminotransferase class-III VV93_v1c27830 PF00117 Glutamine amidotransferase class-I VV93_v1c27860 PF00579 tRNA synthetases class I (W and Y) VV93_v1c27870 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c27880 PF00588 SpoU rRNA Methylase family VV93_v1c27880 PF08032 RNA 2'-O ribose methyltransferase substrate binding VV93_v1c27890 PF08461 Ribonuclease R winged-helix domain VV93_v1c27890 PF08206 Ribonuclease B OB domain VV93_v1c27890 PF00575 S1 RNA binding domain VV93_v1c27890 PF00773 RNB domain VV93_v1c27890 PF17876 Cold shock domain VV93_v1c27900 PF01979 Amidohydrolase family VV93_v1c27910 PF02082 Transcriptional regulator VV93_v1c27920 PF00042 Globin VV93_v1c27920 PF00970 Oxidoreductase FAD-binding domain VV93_v1c27920 PF00175 Oxidoreductase NAD-binding domain VV93_v1c27930 PF08238 Sel1 repeat VV93_v1c27940 PF00709 Adenylosuccinate synthetase VV93_v1c27950 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VV93_v1c27960 PF01145 SPFH domain / Band 7 family VV93_v1c27970 PF01145 SPFH domain / Band 7 family VV93_v1c27970 PF12221 Bacterial membrane protein N terminal VV93_v1c27980 PF01926 50S ribosome-binding GTPase VV93_v1c27980 PF13167 GTP-binding GTPase N-terminal VV93_v1c27980 PF16360 GTP-binding GTPase Middle Region VV93_v1c27990 PF17209 Hfq protein VV93_v1c28010 PF08676 MutL C terminal dimerisation domain VV93_v1c28010 PF01119 DNA mismatch repair protein, C-terminal domain VV93_v1c28020 PF01520 N-acetylmuramoyl-L-alanine amidase VV93_v1c28030 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VV93_v1c28040 PF08331 Domain of unknown function (DUF1730) VV93_v1c28050 PF00929 Exonuclease VV93_v1c28060 PF03193 RsgA GTPase VV93_v1c28070 PF02666 Phosphatidylserine decarboxylase VV93_v1c28080 PF00939 Sodium:sulfate symporter transmembrane region VV93_v1c28100 PF01676 Metalloenzyme superfamily VV93_v1c28100 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VV93_v1c28110 PF00581 Rhodanese-like domain VV93_v1c28120 PF02556 Preprotein translocase subunit SecB VV93_v1c28130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VV93_v1c28130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VV93_v1c28140 PF06426 Serine acetyltransferase, N-terminal VV93_v1c28140 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c28150 PF01551 Peptidase family M23 VV93_v1c28170 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c28170 PF08360 QacR-like protein, C-terminal region VV93_v1c28190 PF00152 tRNA synthetases class II (D, K and N) VV93_v1c28200 PF00890 FAD binding domain VV93_v1c28200 PF02910 Fumarate reductase flavoprotein C-term VV93_v1c28210 PF13085 2Fe-2S iron-sulfur cluster binding domain VV93_v1c28210 PF13183 4Fe-4S dicluster domain VV93_v1c28220 PF02300 Fumarate reductase subunit C VV93_v1c28230 PF02313 Fumarate reductase subunit D VV93_v1c28250 PF09285 Elongation factor P, C-terminal VV93_v1c28250 PF01132 Elongation factor P (EF-P) OB domain VV93_v1c28250 PF08207 Elongation factor P (EF-P) KOW-like domain VV93_v1c28260 PF04055 Radical SAM superfamily VV93_v1c28270 PF02308 MgtC family VV93_v1c28290 PF00118 TCP-1/cpn60 chaperonin family VV93_v1c28300 PF00166 Chaperonin 10 Kd subunit VV93_v1c28310 PF01554 MatE VV93_v1c28320 PF00365 Phosphofructokinase VV93_v1c28330 PF01545 Cation efflux family VV93_v1c28330 PF16916 Dimerisation domain of Zinc Transporter VV93_v1c28340 PF07813 LTXXQ motif family protein VV93_v1c28350 PF00072 Response regulator receiver domain VV93_v1c28350 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c28360 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c28360 PF00672 HAMP domain VV93_v1c28360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c28360 PF16527 Two-component sensor protein CpxA, periplasmic domain VV93_v1c28370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV93_v1c28370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV93_v1c28380 PF00588 SpoU rRNA Methylase family VV93_v1c28390 PF04186 FxsA cytoplasmic membrane protein VV93_v1c28400 PF00206 Lyase VV93_v1c28400 PF10415 Fumarase C C-terminus VV93_v1c28410 PF03605 Anaerobic c4-dicarboxylate membrane transporter VV93_v1c28420 PF11412 Disulphide bond corrector protein DsbC VV93_v1c28420 PF02683 Cytochrome C biogenesis protein transmembrane region VV93_v1c28430 PF00072 Response regulator receiver domain VV93_v1c28430 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c28440 PF01914 MarC family integral membrane protein VV93_v1c28460 PF00474 Sodium:solute symporter family VV93_v1c28470 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c28470 PF01627 Hpt domain VV93_v1c28470 PF00072 Response regulator receiver domain VV93_v1c28470 PF00672 HAMP domain VV93_v1c28470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c28480 PF12832 MFS_1 like family VV93_v1c28510 PF00501 AMP-binding enzyme VV93_v1c28510 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c28510 PF16177 Acetyl-coenzyme A synthetase N-terminus VV93_v1c28520 PF01220 Dehydroquinase class II VV93_v1c28530 PF00364 Biotin-requiring enzyme VV93_v1c28540 PF02785 Biotin carboxylase C-terminal domain VV93_v1c28540 PF00289 Biotin carboxylase, N-terminal domain VV93_v1c28540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_v1c28560 PF01207 Dihydrouridine synthase (Dus) VV93_v1c28570 PF02954 Bacterial regulatory protein, Fis family VV93_v1c28580 PF00672 HAMP domain VV93_v1c28580 PF17200 Single Cache domain 2 VV93_v1c28580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c28590 PF13411 MerR HTH family regulatory protein VV93_v1c28600 PF01808 AICARFT/IMPCHase bienzyme VV93_v1c28600 PF02142 MGS-like domain VV93_v1c28610 PF02843 Phosphoribosylglycinamide synthetase, C domain VV93_v1c28610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VV93_v1c28610 PF02844 Phosphoribosylglycinamide synthetase, N domain VV93_v1c28650 PF00216 Bacterial DNA-binding protein VV93_v1c28660 PF00571 CBS domain VV93_v1c28660 PF01595 Cyclin M transmembrane N-terminal domain VV93_v1c28670 PF04222 Protein of unknown function (DUF416) VV93_v1c28680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c28680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c28690 PF03167 Uracil DNA glycosylase superfamily VV93_v1c28700 PF01208 Uroporphyrinogen decarboxylase (URO-D) VV93_v1c28730 PF00293 NUDIX domain VV93_v1c28730 PF09297 NADH pyrophosphatase zinc ribbon domain VV93_v1c28740 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VV93_v1c28750 PF04997 RNA polymerase Rpb1, domain 1 VV93_v1c28750 PF04983 RNA polymerase Rpb1, domain 3 VV93_v1c28750 PF04998 RNA polymerase Rpb1, domain 5 VV93_v1c28750 PF05000 RNA polymerase Rpb1, domain 4 VV93_v1c28750 PF00623 RNA polymerase Rpb1, domain 2 VV93_v1c28760 PF10385 RNA polymerase beta subunit external 1 domain VV93_v1c28760 PF04560 RNA polymerase Rpb2, domain 7 VV93_v1c28760 PF00562 RNA polymerase Rpb2, domain 6 VV93_v1c28760 PF04565 RNA polymerase Rpb2, domain 3 VV93_v1c28760 PF04561 RNA polymerase Rpb2, domain 2 VV93_v1c28760 PF04563 RNA polymerase beta subunit VV93_v1c28770 PF00542 Ribosomal protein L7/L12 C-terminal domain VV93_v1c28770 PF16320 Ribosomal protein L7/L12 dimerisation domain VV93_v1c28780 PF00466 Ribosomal protein L10 VV93_v1c28790 PF00687 Ribosomal protein L1p/L10e family VV93_v1c28800 PF03946 Ribosomal protein L11, N-terminal domain VV93_v1c28800 PF00298 Ribosomal protein L11, RNA binding domain VV93_v1c28810 PF02357 Transcription termination factor nusG VV93_v1c28810 PF00467 KOW motif VV93_v1c28820 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VV93_v1c28830 PF03143 Elongation factor Tu C-terminal domain VV93_v1c28830 PF03144 Elongation factor Tu domain 2 VV93_v1c28830 PF00009 Elongation factor Tu GTP binding domain VV93_v1c28840 PF00485 Phosphoribulokinase / Uridine kinase family VV93_v1c28850 PF08279 HTH domain VV93_v1c28850 PF02237 Biotin protein ligase C terminal domain VV93_v1c28850 PF03099 Biotin/lipoate A/B protein ligase family VV93_v1c28860 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VV93_v1c28860 PF01565 FAD binding domain VV93_v1c28880 PF13091 PLD-like domain VV93_v1c28980 PF00175 Oxidoreductase NAD-binding domain VV93_v1c28990 PF00970 Oxidoreductase FAD-binding domain VV93_v1c28990 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c28990 PF00175 Oxidoreductase NAD-binding domain VV93_v1c29000 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VV93_v1c29020 PF07497 Rho termination factor, RNA-binding domain VV93_v1c29020 PF07498 Rho termination factor, N-terminal domain VV93_v1c29020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_v1c29030 PF00085 Thioredoxin VV93_v1c29040 PF00271 Helicase conserved C-terminal domain VV93_v1c29040 PF00270 DEAD/DEAH box helicase VV93_v1c29050 PF02541 Ppx/GppA phosphatase family VV93_v1c29060 PF02592 Putative vitamin uptake transporter VV93_v1c29080 PF09382 RQC domain VV93_v1c29080 PF16124 RecQ zinc-binding VV93_v1c29080 PF00570 HRDC domain VV93_v1c29080 PF00271 Helicase conserved C-terminal domain VV93_v1c29080 PF00270 DEAD/DEAH box helicase VV93_v1c29100 PF00892 EamA-like transporter family VV93_v1c29120 PF01810 LysE type translocator VV93_v1c29130 PF13361 UvrD-like helicase C-terminal domain VV93_v1c29130 PF00580 UvrD/REP helicase N-terminal domain VV93_v1c29150 PF05114 Protein of unknown function (DUF692) VV93_v1c29180 PF07690 Major Facilitator Superfamily VV93_v1c29190 PF03466 LysR substrate binding domain VV93_v1c29190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c29200 PF00557 Metallopeptidase family M24 VV93_v1c29200 PF00557 Metallopeptidase family M24 VV93_v1c29200 PF01321 Creatinase/Prolidase N-terminal domain VV93_v1c29200 PF01321 Creatinase/Prolidase N-terminal domain VV93_v1c29210 PF04055 Radical SAM superfamily VV93_v1c29210 PF06968 Biotin and Thiamin Synthesis associated domain VV93_v1c29220 PF05690 Thiazole biosynthesis protein ThiG VV93_v1c29240 PF00899 ThiF family VV93_v1c29250 PF02581 Thiamine monophosphate synthase VV93_v1c29260 PF01964 Radical SAM ThiC family VV93_v1c29260 PF13667 ThiC-associated domain VV93_v1c29270 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VV93_v1c29280 PF07732 Multicopper oxidase VV93_v1c29280 PF07731 Multicopper oxidase VV93_v1c29280 PF00394 Multicopper oxidase VV93_v1c29300 PF13358 DDE superfamily endonuclease VV93_v1c29360 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c29370 PF07369 Protein of unknown function (DUF1488) VV93_v1c29380 PF08501 Shikimate dehydrogenase substrate binding domain VV93_v1c29380 PF01488 Shikimate / quinate 5-dehydrogenase VV93_v1c29380 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VV93_v1c29390 PF01218 Coproporphyrinogen III oxidase VV93_v1c29400 PF01300 Telomere recombination VV93_v1c29410 PF00731 AIR carboxylase VV93_v1c29420 PF02222 ATP-grasp domain VV93_v1c29420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VV93_v1c29430 PF01396 Topoisomerase DNA binding C4 zinc finger VV93_v1c29440 PF04361 Protein of unknown function (DUF494) VV93_v1c29450 PF02481 DNA recombination-mediator protein A VV93_v1c29450 PF17782 DprA winged helix domain VV93_v1c29470 PF01327 Polypeptide deformylase VV93_v1c29480 PF00551 Formyl transferase VV93_v1c29480 PF02911 Formyl transferase, C-terminal domain VV93_v1c29490 PF01189 16S rRNA methyltransferase RsmB/F VV93_v1c29490 PF01029 NusB family VV93_v1c29500 PF02080 TrkA-C domain VV93_v1c29500 PF02254 TrkA-N domain VV93_v1c29510 PF02386 Cation transport protein VV93_v1c29520 PF03006 Haemolysin-III related VV93_v1c29530 PF07070 SpoOM protein VV93_v1c29550 PF06288 Protein of unknown function (DUF1040) VV93_v1c29560 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VV93_v1c29560 PF12801 4Fe-4S binding domain VV93_v1c29560 PF13746 4Fe-4S dicluster domain VV93_v1c29570 PF01636 Phosphotransferase enzyme family VV93_v1c29580 PF01323 DSBA-like thioredoxin domain VV93_v1c29590 PF01553 Acyltransferase VV93_v1c29610 PF13335 Magnesium chelatase, subunit ChlI C-terminal VV93_v1c29610 PF01078 Magnesium chelatase, subunit ChlI VV93_v1c29620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_v1c29620 PF00205 Thiamine pyrophosphate enzyme, central domain VV93_v1c29620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_v1c29640 PF01063 Amino-transferase class IV VV93_v1c29650 PF00920 Dehydratase family VV93_v1c29660 PF00585 C-terminal regulatory domain of Threonine dehydratase VV93_v1c29660 PF00291 Pyridoxal-phosphate dependent enzyme VV93_v1c29670 PF03466 LysR substrate binding domain VV93_v1c29670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c29680 PF07690 Major Facilitator Superfamily VV93_v1c29690 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c29700 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c29710 PF12804 MobA-like NTP transferase domain VV93_v1c29710 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c29720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VV93_v1c29720 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VV93_v1c29730 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV93_v1c29730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_v1c29740 PF00231 ATP synthase VV93_v1c29750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_v1c29750 PF00306 ATP synthase alpha/beta chain, C terminal domain VV93_v1c29750 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV93_v1c29760 PF00213 ATP synthase delta (OSCP) subunit VV93_v1c29770 PF00430 ATP synthase B/B' CF(0) VV93_v1c29780 PF00137 ATP synthase subunit C VV93_v1c29790 PF00119 ATP synthase A chain VV93_v1c29800 PF03899 ATP synthase I chain VV93_v1c29810 PF02195 ParB-like nuclease domain VV93_v1c29810 PF17762 HTH domain found in ParB protein VV93_v1c29820 PF13614 AAA domain VV93_v1c29830 PF02527 rRNA small subunit methyltransferase G VV93_v1c29840 PF13932 GidA associated domain VV93_v1c29840 PF01134 Glucose inhibited division protein A VV93_v1c29860 PF00258 Flavodoxin VV93_v1c29970 PF12161 HsdM N-terminal domain VV93_v1c29970 PF02384 N-6 DNA Methylase VV93_v1c29990 PF00271 Helicase conserved C-terminal domain VV93_v1c29990 PF04851 Type III restriction enzyme, res subunit VV93_v1c29990 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VV93_v1c29990 PF08463 EcoEI R protein C-terminal VV93_v1c30040 PF00589 Phage integrase family VV93_v1c30040 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c30050 PF12631 MnmE helical domain VV93_v1c30050 PF01926 50S ribosome-binding GTPase VV93_v1c30050 PF10396 GTP-binding protein TrmE N-terminus VV93_v1c30060 PF02096 60Kd inner membrane protein VV93_v1c30060 PF14849 YidC periplasmic domain VV93_v1c30070 PF00825 Ribonuclease P VV93_v1c30080 PF00468 Ribosomal protein L34 VV93_v1c30090 PF00005 ABC transporter VV93_v1c30100 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c30110 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c30140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c30140 PF00005 ABC transporter VV93_v1c30150 PF00005 ABC transporter VV93_v1c30150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c30170 PF00925 GTP cyclohydrolase II VV93_v1c30170 PF08719 Domain of unknown function (DUF1768) VV93_v1c30190 PF00672 HAMP domain VV93_v1c30190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c30190 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c30190 PF01627 Hpt domain VV93_v1c30190 PF00072 Response regulator receiver domain VV93_v1c30190 PF17149 Periplasmic sensor domain found in signal transduction proteins VV93_v1c30210 PF01709 Transcriptional regulator VV93_v1c30230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c30230 PF03466 LysR substrate binding domain VV93_v1c30250 PF00005 ABC transporter VV93_v1c30260 PF02687 FtsX-like permease family VV93_v1c30260 PF12704 MacB-like periplasmic core domain VV93_v1c30290 PF06580 Histidine kinase VV93_v1c30290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c30290 PF07694 5TMR of 5TMR-LYT VV93_v1c30300 PF00072 Response regulator receiver domain VV93_v1c30300 PF04397 LytTr DNA-binding domain VV93_v1c30310 PF00672 HAMP domain VV93_v1c30310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c30310 PF17200 Single Cache domain 2 VV93_v1c30330 PF03616 Sodium/glutamate symporter VV93_v1c30340 PF03616 Sodium/glutamate symporter VV93_v1c30360 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VV93_v1c30390 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VV93_v1c30390 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VV93_v1c30410 PF03466 LysR substrate binding domain VV93_v1c30410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c30430 PF00730 HhH-GPD superfamily base excision DNA repair protein VV93_v1c30430 PF06029 AlkA N-terminal domain VV93_v1c30440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VV93_v1c30440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VV93_v1c30450 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VV93_v1c30480 PF03600 Citrate transporter VV93_v1c30510 PF08361 MAATS-type transcriptional repressor, C-terminal region VV93_v1c30510 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c30530 PF00704 Glycosyl hydrolases family 18 VV93_v1c30530 PF08329 Chitinase A, N-terminal domain VV93_v1c30550 PF06865 Pyrimidine/purine nucleoside phosphorylase VV93_v1c30560 PF02678 Pirin VV93_v1c30560 PF05726 Pirin C-terminal cupin domain VV93_v1c30580 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c30580 PF00563 EAL domain VV93_v1c30590 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c30590 PF17158 Membrane-associated sensor, integral membrane domain VV93_v1c30600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV93_v1c30600 PF00128 Alpha amylase, catalytic domain VV93_v1c30610 PF02264 LamB porin VV93_v1c30620 PF07148 Maltose operon periplasmic protein precursor (MalM) VV93_v1c30640 PF01547 Bacterial extracellular solute-binding protein VV93_v1c30650 PF17999 Pullulanase N1-terminal domain VV93_v1c30650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV93_v1c30650 PF00128 Alpha amylase, catalytic domain VV93_v1c30670 PF11852 Domain of unknown function (DUF3372) VV93_v1c30670 PF17967 Pullulanase N2 domain VV93_v1c30670 PF03714 Bacterial pullanase-associated domain VV93_v1c30670 PF18494 Pullulanase Ins domain VV93_v1c30670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV93_v1c30700 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VV93_v1c30700 PF01276 Orn/Lys/Arg decarboxylase, major domain VV93_v1c30700 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VV93_v1c30710 PF13520 Amino acid permease VV93_v1c30720 PF08543 Phosphomethylpyrimidine kinase VV93_v1c30780 PF13545 Crp-like helix-turn-helix domain VV93_v1c30780 PF00027 Cyclic nucleotide-binding domain VV93_v1c30790 PF00375 Sodium:dicarboxylate symporter family VV93_v1c30800 PF03193 RsgA GTPase VV93_v1c30810 PF04314 Copper chaperone PCu(A)C VV93_v1c30820 PF02630 SCO1/SenC VV93_v1c30870 PF17874 MalT-like TPR region VV93_v1c30870 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c30890 PF00343 Carbohydrate phosphorylase VV93_v1c30900 PF02446 4-alpha-glucanotransferase VV93_v1c30910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV93_v1c30910 PF00128 Alpha amylase, catalytic domain VV93_v1c30910 PF02806 Alpha amylase, C-terminal all-beta domain VV93_v1c30920 PF04055 Radical SAM superfamily VV93_v1c30920 PF18693 TRAM domain VV93_v1c30920 PF00919 Uncharacterized protein family UPF0004 VV93_v1c30930 PF01810 LysE type translocator VV93_v1c30940 PF01037 Lrp/AsnC ligand binding domain VV93_v1c30980 PF01470 Pyroglutamyl peptidase VV93_v1c31030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c31030 PF00672 HAMP domain VV93_v1c31030 PF02743 Cache domain VV93_v1c31070 PF00171 Aldehyde dehydrogenase family VV93_v1c31080 PF02798 Glutathione S-transferase, N-terminal domain VV93_v1c31090 PF01966 HD domain VV93_v1c31100 PF02690 Na+/Pi-cotransporter VV93_v1c31110 PF05193 Peptidase M16 inactive domain VV93_v1c31110 PF00675 Insulinase (Peptidase family M16) VV93_v1c31130 PF03466 LysR substrate binding domain VV93_v1c31130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c31150 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c31150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c31150 PF08521 Two-component sensor kinase N-terminal VV93_v1c31160 PF00072 Response regulator receiver domain VV93_v1c31160 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c31190 PF00501 AMP-binding enzyme VV93_v1c31210 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c31240 PF02264 LamB porin VV93_v1c31250 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c31270 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c31280 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c31290 PF00232 Glycosyl hydrolase family 1 VV93_v1c31310 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c31330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c31340 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c31350 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c31350 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c31360 PF00005 ABC transporter VV93_v1c31360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c31370 PF00005 ABC transporter VV93_v1c31370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c31390 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c31410 PF00722 Glycosyl hydrolases family 16 VV93_v1c31420 PF02264 LamB porin VV93_v1c31430 PF12833 Helix-turn-helix domain VV93_v1c31440 PF00933 Glycosyl hydrolase family 3 N terminal domain VV93_v1c31440 PF01915 Glycosyl hydrolase family 3 C-terminal domain VV93_v1c31440 PF14310 Fibronectin type III-like domain VV93_v1c31450 PF01554 MatE VV93_v1c31470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c31470 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c31520 PF00849 RNA pseudouridylate synthase VV93_v1c31530 PF17151 Periplasmic sensor domain VV93_v1c31530 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c31540 PF00873 AcrB/AcrD/AcrF family VV93_v1c31570 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c31580 PF02653 Branched-chain amino acid transport system / permease component VV93_v1c31590 PF00005 ABC transporter VV93_v1c31600 PF13407 Periplasmic binding protein domain VV93_v1c31610 PF02929 Beta galactosidase small chain VV93_v1c31610 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VV93_v1c31610 PF00703 Glycosyl hydrolases family 2 VV93_v1c31610 PF16353 Domain of unknown function(DUF4981) VV93_v1c31610 PF02837 Glycosyl hydrolases family 2, sugar binding domain VV93_v1c31630 PF16874 Glycosyl hydrolase family 36 C-terminal domain VV93_v1c31630 PF16875 Glycosyl hydrolase family 36 N-terminal domain VV93_v1c31660 PF00588 SpoU rRNA Methylase family VV93_v1c31660 PF08032 RNA 2'-O ribose methyltransferase substrate binding VV93_v1c31670 PF00037 4Fe-4S binding domain VV93_v1c31670 PF11953 Domain of unknown function (DUF3470) VV93_v1c31690 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c31690 PF00593 TonB dependent receptor VV93_v1c31700 PF12833 Helix-turn-helix domain VV93_v1c31730 PF01238 Phosphomannose isomerase type I VV93_v1c31740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c31740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_v1c31740 PF02378 Phosphotransferase system, EIIC VV93_v1c31750 PF12833 Helix-turn-helix domain VV93_v1c31770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_v1c31790 PF00155 Aminotransferase class I and II VV93_v1c31790 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c31850 PF00384 Molybdopterin oxidoreductase VV93_v1c31850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV93_v1c31850 PF12838 4Fe-4S dicluster domain VV93_v1c31850 PF01568 Molydopterin dinucleotide binding domain VV93_v1c31850 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VV93_v1c31880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c31880 PF03466 LysR substrate binding domain VV93_v1c31890 PF01048 Phosphorylase superfamily VV93_v1c31900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c31910 PF01752 Collagenase VV93_v1c31910 PF04151 Bacterial pre-peptidase C-terminal domain VV93_v1c31910 PF08453 Peptidase family M9 N-terminal VV93_v1c31960 PF04973 Nicotinamide mononucleotide transporter VV93_v1c31970 PF01048 Phosphorylase superfamily VV93_v1c32010 PF03466 LysR substrate binding domain VV93_v1c32010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32020 PF01638 HxlR-like helix-turn-helix VV93_v1c32060 PF00764 Arginosuccinate synthase VV93_v1c32070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32070 PF03466 LysR substrate binding domain VV93_v1c32080 PF00375 Sodium:dicarboxylate symporter family VV93_v1c32150 PF03466 LysR substrate binding domain VV93_v1c32150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32170 PF00881 Nitroreductase family VV93_v1c32180 PF05958 tRNA (Uracil-5-)-methyltransferase VV93_v1c32190 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VV93_v1c32250 PF00155 Aminotransferase class I and II VV93_v1c32250 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c32270 PF08448 PAS fold VV93_v1c32270 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c32300 PF04231 Endonuclease I VV93_v1c32310 PF16657 Maltogenic Amylase, C-terminal domain VV93_v1c32310 PF02903 Alpha amylase, N-terminal ig-like domain VV93_v1c32310 PF00128 Alpha amylase, catalytic domain VV93_v1c32330 PF00884 Sulfatase VV93_v1c32340 PF08019 Phosphoethanolamine transferase EptA/EptB VV93_v1c32340 PF00884 Sulfatase VV93_v1c32350 PF01219 Prokaryotic diacylglycerol kinase VV93_v1c32360 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c32360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c32360 PF00672 HAMP domain VV93_v1c32370 PF00072 Response regulator receiver domain VV93_v1c32370 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c32390 PF03466 LysR substrate binding domain VV93_v1c32390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32400 PF00106 short chain dehydrogenase VV93_v1c32410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32410 PF03466 LysR substrate binding domain VV93_v1c32450 PF01323 DSBA-like thioredoxin domain VV93_v1c32470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VV93_v1c32530 PF01569 PAP2 superfamily VV93_v1c32540 PF08543 Phosphomethylpyrimidine kinase VV93_v1c32550 PF04013 Putative SAM-dependent RNA methyltransferase VV93_v1c32610 PF10928 Protein of unknown function (DUF2810) VV93_v1c32630 PF01609 Transposase DDE domain VV93_v1c32630 PF13006 Insertion element 4 transposase N-terminal VV93_v1c32640 PF07690 Major Facilitator Superfamily VV93_v1c32680 PF13416 Bacterial extracellular solute-binding protein VV93_v1c32690 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c32690 PF00593 TonB dependent receptor VV93_v1c32710 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c32710 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c32710 PF00563 EAL domain VV93_v1c32730 PF01906 Putative heavy-metal-binding VV93_v1c32740 PF03466 LysR substrate binding domain VV93_v1c32740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32760 PF01966 HD domain VV93_v1c32800 PF00080 Copper/zinc superoxide dismutase (SODC) VV93_v1c32820 PF00199 Catalase VV93_v1c32820 PF06628 Catalase-related immune-responsive VV93_v1c32850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c32860 PF03466 LysR substrate binding domain VV93_v1c32860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c32870 PF07690 Major Facilitator Superfamily VV93_v1c32900 PF00657 GDSL-like Lipase/Acylhydrolase VV93_v1c32910 PF00155 Aminotransferase class I and II VV93_v1c32920 PF00107 Zinc-binding dehydrogenase VV93_v1c32920 PF08240 Alcohol dehydrogenase GroES-like domain VV93_v1c33000 PF08212 Lipocalin-like domain VV93_v1c33050 PF03466 LysR substrate binding domain VV93_v1c33050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c33070 PF01593 Flavin containing amine oxidoreductase VV93_v1c33090 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c33090 PF00072 Response regulator receiver domain VV93_v1c33100 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c33100 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c33100 PF00563 EAL domain VV93_v1c33110 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c33110 PF00072 Response regulator receiver domain VV93_v1c33120 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c33120 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c33120 PF00563 EAL domain VV93_v1c33130 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c33130 PF00072 Response regulator receiver domain VV93_v1c33130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c33130 PF09456 RcsC Alpha-Beta-Loop (ABL) VV93_v1c33140 PF04076 Bacterial OB fold (BOF) protein VV93_v1c33160 PF00005 ABC transporter VV93_v1c33160 PF00664 ABC transporter transmembrane region VV93_v1c33160 PF03412 Peptidase C39 family VV93_v1c33170 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c33180 PF02321 Outer membrane efflux protein VV93_v1c33200 PF12849 PBP superfamily domain VV93_v1c33210 PF00194 Eukaryotic-type carbonic anhydrase VV93_v1c33220 PF00924 Mechanosensitive ion channel VV93_v1c33270 PF12945 Flagellar protein YcgR VV93_v1c33270 PF07238 PilZ domain VV93_v1c33290 PF13302 Acetyltransferase (GNAT) domain VV93_v1c33300 PF14685 Tricorn protease PDZ domain VV93_v1c33300 PF07676 WD40-like Beta Propeller Repeat VV93_v1c33300 PF03572 Peptidase family S41 VV93_v1c33300 PF14684 Tricorn protease C1 domain VV93_v1c33330 PF00005 ABC transporter VV93_v1c33330 PF12558 ATP-binding cassette cobalt transporter VV93_v1c33340 PF07155 ECF-type riboflavin transporter, S component VV93_v1c33350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c33350 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c33360 PF11742 Protein of unknown function (DUF3302) VV93_v1c33370 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c33400 PF01048 Phosphorylase superfamily VV93_v1c33410 PF08349 Protein of unknown function (DUF1722) VV93_v1c33420 PF13411 MerR HTH family regulatory protein VV93_v1c33430 PF03441 FAD binding domain of DNA photolyase VV93_v1c33430 PF00875 DNA photolyase VV93_v1c33440 PF03734 L,D-transpeptidase catalytic domain VV93_v1c33440 PF01476 LysM domain VV93_v1c33440 PF17969 L,D-transpeptidase C-terminal domain VV93_v1c33460 PF00271 Helicase conserved C-terminal domain VV93_v1c33460 PF00270 DEAD/DEAH box helicase VV93_v1c33470 PF00326 Prolyl oligopeptidase family VV93_v1c33470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VV93_v1c33500 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c33500 PF00593 TonB dependent receptor VV93_v1c33540 PF02743 Cache domain VV93_v1c33540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c33540 PF00672 HAMP domain VV93_v1c33550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c33550 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c33550 PF00672 HAMP domain VV93_v1c33560 PF12849 PBP superfamily domain VV93_v1c33570 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c33580 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c33590 PF00005 ABC transporter VV93_v1c33600 PF00563 EAL domain VV93_v1c33600 PF01590 GAF domain VV93_v1c33600 PF00360 Phytochrome region VV93_v1c33600 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c33620 PF00092 von Willebrand factor type A domain VV93_v1c33620 PF07584 Aerotolerance regulator N-terminal VV93_v1c33650 PF01882 Protein of unknown function DUF58 VV93_v1c33660 PF17863 AAA lid domain VV93_v1c33660 PF07726 ATPase family associated with various cellular activities (AAA) VV93_v1c33670 PF02743 Cache domain VV93_v1c33670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c33670 PF00672 HAMP domain VV93_v1c33690 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c33700 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c33720 PF00664 ABC transporter transmembrane region VV93_v1c33720 PF00005 ABC transporter VV93_v1c33730 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c33760 PF13439 Glycosyltransferase Family 4 VV93_v1c33760 PF00534 Glycosyl transferases group 1 VV93_v1c33780 PF00534 Glycosyl transferases group 1 VV93_v1c33780 PF13439 Glycosyltransferase Family 4 VV93_v1c33790 PF02706 Chain length determinant protein VV93_v1c33790 PF13807 G-rich domain on putative tyrosine kinase VV93_v1c33790 PF13614 AAA domain VV93_v1c33800 PF10531 SLBB domain VV93_v1c33800 PF02563 Polysaccharide biosynthesis/export protein VV93_v1c33820 PF02397 Bacterial sugar transferase VV93_v1c33830 PF08402 TOBE domain VV93_v1c33830 PF00005 ABC transporter VV93_v1c33840 PF01547 Bacterial extracellular solute-binding protein VV93_v1c33850 PF14785 Maltose transport system permease protein MalF P2 domain VV93_v1c33850 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c33860 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c33920 PF05661 Protein of unknown function (DUF808) VV93_v1c33930 PF17151 Periplasmic sensor domain VV93_v1c33930 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c33940 PF01979 Amidohydrolase family VV93_v1c33950 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c33950 PF03473 MOSC domain VV93_v1c33950 PF03476 MOSC N-terminal beta barrel domain VV93_v1c33950 PF03476 MOSC N-terminal beta barrel domain VV93_v1c33950 PF03473 MOSC domain VV93_v1c33950 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c33960 PF02540 NAD synthase VV93_v1c34050 PF00005 ABC transporter VV93_v1c34060 PF01032 FecCD transport family VV93_v1c34080 PF02472 Biopolymer transport protein ExbD/TolR VV93_v1c34090 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c34100 PF03544 Gram-negative bacterial TonB protein C-terminal VV93_v1c34110 PF04055 Radical SAM superfamily VV93_v1c34120 PF06228 Haem utilisation ChuX/HutX VV93_v1c34130 PF01243 Pyridoxamine 5'-phosphate oxidase VV93_v1c34150 PF00072 Response regulator receiver domain VV93_v1c34150 PF01584 CheW-like domain VV93_v1c34170 PF00582 Universal stress protein family VV93_v1c34180 PF00128 Alpha amylase, catalytic domain VV93_v1c34190 PF00672 HAMP domain VV93_v1c34190 PF02743 Cache domain VV93_v1c34190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c34200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c34200 PF00672 HAMP domain VV93_v1c34200 PF02743 Cache domain VV93_v1c34270 PF01551 Peptidase family M23 VV93_v1c34270 PF08525 Opacity-associated protein A N-terminal motif VV93_v1c34270 PF01476 LysM domain VV93_v1c34280 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c34310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_v1c34310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV93_v1c34320 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c34320 PF00114 Pilin (bacterial filament) VV93_v1c34350 PF01773 Na+ dependent nucleoside transporter N-terminus VV93_v1c34350 PF07662 Na+ dependent nucleoside transporter C-terminus VV93_v1c34350 PF07670 Nucleoside recognition VV93_v1c34380 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c34380 PF00563 EAL domain VV93_v1c34380 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c34390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c34390 PF00672 HAMP domain VV93_v1c34390 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c34420 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c34430 PF01641 SelR domain VV93_v1c34430 PF01625 Peptide methionine sulfoxide reductase VV93_v1c34440 PF02566 OsmC-like protein VV93_v1c34450 PF14602 Hexapeptide repeat of succinyl-transferase VV93_v1c34450 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c34450 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VV93_v1c34480 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c34510 PF00672 HAMP domain VV93_v1c34510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c34530 PF00155 Aminotransferase class I and II VV93_v1c34540 PF01497 Periplasmic binding protein VV93_v1c34540 PF12833 Helix-turn-helix domain VV93_v1c34550 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c34570 PF00266 Aminotransferase class-V VV93_v1c34590 PF00005 ABC transporter VV93_v1c34600 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c34610 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c34610 PF07702 UTRA domain VV93_v1c34630 PF01266 FAD dependent oxidoreductase VV93_v1c34640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c34640 PF03466 LysR substrate binding domain VV93_v1c34660 PF00854 POT family VV93_v1c34670 PF03313 Serine dehydratase alpha chain VV93_v1c34670 PF03315 Serine dehydratase beta chain VV93_v1c34710 PF07943 Penicillin-binding protein 5, C-terminal domain VV93_v1c34710 PF00768 D-alanyl-D-alanine carboxypeptidase VV93_v1c34780 PF13411 MerR HTH family regulatory protein VV93_v1c34820 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c34820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c34860 PF00589 Phage integrase family VV93_v1c34860 PF02899 Phage integrase, N-terminal SAM-like domain VV93_v1c34870 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c34870 PF09308 LuxQ, periplasmic VV93_v1c34870 PF00072 Response regulator receiver domain VV93_v1c34870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c34960 PF13358 DDE superfamily endonuclease VV93_v1c34970 PF00753 Metallo-beta-lactamase superfamily VV93_v1c34970 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV93_v1c35000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c35020 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c35030 PF11999 Protein of unknown function (DUF3494) VV93_v1c35030 PF02368 Bacterial Ig-like domain (group 2) VV93_v1c35050 PF13737 Transposase DDE domain VV93_v1c35070 PF10544 T5orf172 domain VV93_v1c35130 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c35130 PF13977 BetI-type transcriptional repressor, C-terminal VV93_v1c35140 PF00171 Aldehyde dehydrogenase family VV93_v1c35150 PF05199 GMC oxidoreductase VV93_v1c35150 PF00732 GMC oxidoreductase VV93_v1c35160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VV93_v1c35170 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c35180 PF00571 CBS domain VV93_v1c35180 PF00005 ABC transporter VV93_v1c35210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VV93_v1c35210 PF02896 PEP-utilising enzyme, TIM barrel domain VV93_v1c35210 PF00391 PEP-utilising enzyme, mobile domain VV93_v1c35220 PF03618 Kinase/pyrophosphorylase VV93_v1c35260 PF01266 FAD dependent oxidoreductase VV93_v1c35260 PF04324 BFD-like [2Fe-2S] binding domain VV93_v1c35270 PF00890 FAD binding domain VV93_v1c35280 PF02754 Cysteine-rich domain VV93_v1c35280 PF13183 4Fe-4S dicluster domain VV93_v1c35290 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c35310 PF02016 LD-carboxypeptidase N-terminal domain VV93_v1c35310 PF17676 LD-carboxypeptidase C-terminal domain VV93_v1c35320 PF07995 Glucose / Sorbosone dehydrogenase VV93_v1c35340 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c35350 PF00012 Hsp70 protein VV93_v1c35370 PF00581 Rhodanese-like domain VV93_v1c35420 PF13533 Biotin-lipoyl like VV93_v1c35430 PF00873 AcrB/AcrD/AcrF family VV93_v1c35440 PF13194 Domain of unknown function (DUF4010) VV93_v1c35450 PF07504 Fungalysin/Thermolysin Propeptide Motif VV93_v1c35450 PF03413 Peptidase propeptide and YPEB domain VV93_v1c35450 PF01447 Thermolysin metallopeptidase, catalytic domain VV93_v1c35450 PF02868 Thermolysin metallopeptidase, alpha-helical domain VV93_v1c35500 PF03222 Tryptophan/tyrosine permease family VV93_v1c35510 PF00149 Calcineurin-like phosphoesterase VV93_v1c35530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c35530 PF00672 HAMP domain VV93_v1c35530 PF02743 Cache domain VV93_v1c35550 PF18416 N-acetylglucosamine binding protein domain 2 VV93_v1c35550 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VV93_v1c35560 PF00892 EamA-like transporter family VV93_v1c35590 PF01569 PAP2 superfamily VV93_v1c35610 PF03606 C4-dicarboxylate anaerobic carrier VV93_v1c35620 PF00171 Aldehyde dehydrogenase family VV93_v1c35630 PF00034 Cytochrome c VV93_v1c35640 PF01212 Beta-eliminating lyase VV93_v1c35660 PF17868 AAA lid domain VV93_v1c35660 PF07728 AAA domain (dynein-related subfamily) VV93_v1c35660 PF12592 Protein of unknown function (DUF3763) VV93_v1c35670 PF05762 VWA domain containing CoxE-like protein VV93_v1c35680 PF04237 YjbR VV93_v1c35710 PF05025 RbsD / FucU transport protein family VV93_v1c35720 PF00005 ABC transporter VV93_v1c35730 PF02653 Branched-chain amino acid transport system / permease component VV93_v1c35740 PF13407 Periplasmic binding protein domain VV93_v1c35750 PF00294 pfkB family carbohydrate kinase VV93_v1c35760 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c35780 PF00072 Response regulator receiver domain VV93_v1c35780 PF01584 CheW-like domain VV93_v1c35800 PF00583 Acetyltransferase (GNAT) family VV93_v1c35810 PF01926 50S ribosome-binding GTPase VV93_v1c35820 PF00672 HAMP domain VV93_v1c35820 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c35820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c35830 PF01740 STAS domain VV93_v1c35830 PF08678 Rsbr N terminal VV93_v1c35850 PF13581 Histidine kinase-like ATPase domain VV93_v1c35870 PF00672 HAMP domain VV93_v1c35870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c35870 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c35870 PF01627 Hpt domain VV93_v1c35870 PF00072 Response regulator receiver domain VV93_v1c35870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c35880 PF00072 Response regulator receiver domain VV93_v1c35890 PF00149 Calcineurin-like phosphoesterase VV93_v1c35890 PF12320 Type 5 capsule protein repressor C-terminal domain VV93_v1c35900 PF13476 AAA domain VV93_v1c35930 PF03466 LysR substrate binding domain VV93_v1c35930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c35970 PF00263 Bacterial type II and III secretion system protein VV93_v1c35970 PF04972 BON domain VV93_v1c35970 PF13629 Pilus formation protein N terminal region VV93_v1c36000 PF00437 Type II/IV secretion system protein VV93_v1c36120 PF00939 Sodium:sulfate symporter transmembrane region VV93_v1c36130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c36130 PF00989 PAS fold VV93_v1c36130 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VV93_v1c36130 PF17203 Single cache domain 3 VV93_v1c36140 PF00072 Response regulator receiver domain VV93_v1c36140 PF12431 Transcriptional regulator VV93_v1c36150 PF12464 Maltose acetyltransferase VV93_v1c36150 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c36200 PF01032 FecCD transport family VV93_v1c36210 PF01032 FecCD transport family VV93_v1c36220 PF00005 ABC transporter VV93_v1c36230 PF13411 MerR HTH family regulatory protein VV93_v1c36290 PF12805 FUSC-like inner membrane protein yccS VV93_v1c36300 PF13361 UvrD-like helicase C-terminal domain VV93_v1c36300 PF00580 UvrD/REP helicase N-terminal domain VV93_v1c36300 PF12462 DNA helicase IV / RNA helicase N terminal VV93_v1c36310 PF02142 MGS-like domain VV93_v1c36320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV93_v1c36330 PF00072 Response regulator receiver domain VV93_v1c36330 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c36330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c36330 PF00672 HAMP domain VV93_v1c36330 PF17149 Periplasmic sensor domain found in signal transduction proteins VV93_v1c36330 PF01627 Hpt domain VV93_v1c36370 PF03781 Sulfatase-modifying factor enzyme 1 VV93_v1c36380 PF03264 NapC/NirT cytochrome c family, N-terminal region VV93_v1c36410 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VV93_v1c36420 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB VV93_v1c36430 PF00271 Helicase conserved C-terminal domain VV93_v1c36430 PF00270 DEAD/DEAH box helicase VV93_v1c36430 PF03880 DbpA RNA binding domain VV93_v1c36440 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c36440 PF09456 RcsC Alpha-Beta-Loop (ABL) VV93_v1c36440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c36440 PF00072 Response regulator receiver domain VV93_v1c36450 PF00498 FHA domain VV93_v1c36450 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c36450 PF00563 EAL domain VV93_v1c36540 PF12849 PBP superfamily domain VV93_v1c36560 PF12833 Helix-turn-helix domain VV93_v1c36570 PF08206 Ribonuclease B OB domain VV93_v1c36570 PF00773 RNB domain VV93_v1c36570 PF00575 S1 RNA binding domain VV93_v1c36580 PF03880 DbpA RNA binding domain VV93_v1c36580 PF00270 DEAD/DEAH box helicase VV93_v1c36580 PF00271 Helicase conserved C-terminal domain VV93_v1c36590 PF00871 Acetokinase family VV93_v1c36600 PF00884 Sulfatase VV93_v1c36610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c36610 PF03466 LysR substrate binding domain VV93_v1c36620 PF00884 Sulfatase VV93_v1c36630 PF13186 Iron-sulfur cluster-binding domain VV93_v1c36630 PF04055 Radical SAM superfamily VV93_v1c36640 PF07726 ATPase family associated with various cellular activities (AAA) VV93_v1c36640 PF17863 AAA lid domain VV93_v1c36670 PF00092 von Willebrand factor type A domain VV93_v1c36700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c36700 PF03466 LysR substrate binding domain VV93_v1c36710 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VV93_v1c36720 PF03781 Sulfatase-modifying factor enzyme 1 VV93_v1c36730 PF13186 Iron-sulfur cluster-binding domain VV93_v1c36730 PF04055 Radical SAM superfamily VV93_v1c36750 PF08774 VRR-NUC domain VV93_v1c36750 PF18081 Fanconi anemia-associated nuclease SAP domain VV93_v1c36790 PF07690 Major Facilitator Superfamily VV93_v1c36800 PF13533 Biotin-lipoyl like VV93_v1c36850 PF00795 Carbon-nitrogen hydrolase VV93_v1c36870 PF00005 ABC transporter VV93_v1c36870 PF00664 ABC transporter transmembrane region VV93_v1c36900 PF02347 Glycine cleavage system P-protein VV93_v1c36910 PF01597 Glycine cleavage H-protein VV93_v1c36920 PF00464 Serine hydroxymethyltransferase VV93_v1c36940 PF08669 Glycine cleavage T-protein C-terminal barrel domain VV93_v1c36940 PF01571 Aminomethyltransferase folate-binding domain VV93_v1c36990 PF00873 AcrB/AcrD/AcrF family VV93_v1c37010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_v1c37010 PF02378 Phosphotransferase system, EIIC VV93_v1c37020 PF00294 pfkB family carbohydrate kinase VV93_v1c37030 PF00381 PTS HPr component phosphorylation site VV93_v1c37030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c37040 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c37040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV93_v1c37090 PF00224 Pyruvate kinase, barrel domain VV93_v1c37090 PF02887 Pyruvate kinase, alpha/beta domain VV93_v1c37100 PF07690 Major Facilitator Superfamily VV93_v1c37120 PF02743 Cache domain VV93_v1c37120 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c37120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c37130 PF14532 Sigma-54 interaction domain VV93_v1c37130 PF00072 Response regulator receiver domain VV93_v1c37130 PF02954 Bacterial regulatory protein, Fis family VV93_v1c37140 PF00465 Iron-containing alcohol dehydrogenase VV93_v1c37150 PF06719 AraC-type transcriptional regulator N-terminus VV93_v1c37150 PF12833 Helix-turn-helix domain VV93_v1c37160 PF06483 Chitinase C VV93_v1c37160 PF00704 Glycosyl hydrolases family 18 VV93_v1c37170 PF00483 Nucleotidyl transferase VV93_v1c37180 PF01268 Formate--tetrahydrofolate ligase VV93_v1c37190 PF00294 pfkB family carbohydrate kinase VV93_v1c37220 PF11849 Domain of unknown function (DUF3369) VV93_v1c37230 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c37240 PF00672 HAMP domain VV93_v1c37240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c37260 PF04336 Acyl carrier protein phosphodiesterase VV93_v1c37270 PF00270 DEAD/DEAH box helicase VV93_v1c37270 PF00271 Helicase conserved C-terminal domain VV93_v1c37300 PF01292 Prokaryotic cytochrome b561 VV93_v1c37310 PF04264 YceI-like domain VV93_v1c37320 PF01226 Formate/nitrite transporter VV93_v1c37330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c37330 PF03466 LysR substrate binding domain VV93_v1c37340 PF06496 Protein of unknown function (DUF1097) VV93_v1c37350 PF11398 Protein of unknown function (DUF2813) VV93_v1c37360 PF00149 Calcineurin-like phosphoesterase VV93_v1c37360 PF02872 5'-nucleotidase, C-terminal domain VV93_v1c37380 PF03741 Integral membrane protein TerC family VV93_v1c37400 PF00892 EamA-like transporter family VV93_v1c37410 PF00491 Arginase family VV93_v1c37440 PF12262 Bacterial virulence factor lipase N-terminal VV93_v1c37450 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c37480 PF03061 Thioesterase superfamily VV93_v1c37500 PF12793 Sugar transport-related sRNA regulator N-term VV93_v1c37500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c37520 PF00128 Alpha amylase, catalytic domain VV93_v1c37520 PF16657 Maltogenic Amylase, C-terminal domain VV93_v1c37530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c37530 PF03466 LysR substrate binding domain VV93_v1c37570 PF00684 DnaJ central domain VV93_v1c37570 PF01556 DnaJ C terminal domain VV93_v1c37570 PF00226 DnaJ domain VV93_v1c37600 PF00498 FHA domain VV93_v1c37600 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c37600 PF00563 EAL domain VV93_v1c37610 PF12241 Trans-2-enoyl-CoA reductase catalytic region VV93_v1c37610 PF07055 Enoyl reductase FAD binding domain VV93_v1c37610 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VV93_v1c37620 PF13472 GDSL-like Lipase/Acylhydrolase family VV93_v1c37630 PF00005 ABC transporter VV93_v1c37650 PF01266 FAD dependent oxidoreductase VV93_v1c37650 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c37660 PF02626 Carboxyltransferase domain, subdomain A and B VV93_v1c37670 PF02682 Carboxyltransferase domain, subdomain C and D VV93_v1c37680 PF03746 LamB/YcsF family VV93_v1c37700 PF00563 EAL domain VV93_v1c37700 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c37700 PF05231 MASE1 VV93_v1c37700 PF08447 PAS fold VV93_v1c37700 PF08448 PAS fold VV93_v1c37700 PF13426 PAS domain VV93_v1c37710 PF00593 TonB dependent receptor VV93_v1c37710 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c37720 PF03466 LysR substrate binding domain VV93_v1c37720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c37730 PF13380 CoA binding domain VV93_v1c37730 PF13607 Succinyl-CoA ligase like flavodoxin domain VV93_v1c37730 PF00583 Acetyltransferase (GNAT) family VV93_v1c37740 PF05036 Sporulation related domain VV93_v1c37750 PF07478 D-ala D-ala ligase C-terminus VV93_v1c37750 PF01820 D-ala D-ala ligase N-terminus VV93_v1c37770 PF01253 Translation initiation factor SUI1 VV93_v1c37880 PF01381 Helix-turn-helix VV93_v1c38130 PF03701 Uncharacterised protein family (UPF0181) VV93_v1c38160 PF00072 Response regulator receiver domain VV93_v1c38160 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c38180 PF02233 NAD(P) transhydrogenase beta subunit VV93_v1c38190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VV93_v1c38190 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VV93_v1c38190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VV93_v1c38220 PF00072 Response regulator receiver domain VV93_v1c38220 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c38240 PF00072 Response regulator receiver domain VV93_v1c38240 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c38260 PF01047 MarR family VV93_v1c38270 PF00892 EamA-like transporter family VV93_v1c38280 PF03459 TOBE domain VV93_v1c38280 PF00005 ABC transporter VV93_v1c38290 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c38310 PF07685 CobB/CobQ-like glutamine amidotransferase domain VV93_v1c38310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_v1c38340 PF18030 RimK PreATP-grasp domain VV93_v1c38340 PF08443 RimK-like ATP-grasp domain VV93_v1c38350 PF00155 Aminotransferase class I and II VV93_v1c38360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c38360 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c38360 PF00672 HAMP domain VV93_v1c38380 PF03477 ATP cone domain VV93_v1c38380 PF13597 Anaerobic ribonucleoside-triphosphate reductase VV93_v1c38400 PF00873 AcrB/AcrD/AcrF family VV93_v1c38430 PF04143 Sulphur transport VV93_v1c38460 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c38460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_v1c38490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VV93_v1c38490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VV93_v1c38500 PF00085 Thioredoxin VV93_v1c38510 PF07690 Major Facilitator Superfamily VV93_v1c38520 PF12833 Helix-turn-helix domain VV93_v1c38530 PF01554 MatE VV93_v1c38540 PF11756 Nitrous oxide-stimulated promoter VV93_v1c38560 PF00672 HAMP domain VV93_v1c38560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c38560 PF17200 Single Cache domain 2 VV93_v1c38570 PF03605 Anaerobic c4-dicarboxylate membrane transporter VV93_v1c38600 PF02472 Biopolymer transport protein ExbD/TolR VV93_v1c38610 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c38620 PF01618 MotA/TolQ/ExbB proton channel family VV93_v1c38660 PF14824 Sirohaem biosynthesis protein central VV93_v1c38660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_v1c38660 PF10414 Sirohaem synthase dimerisation region VV93_v1c38680 PF13806 Rieske-like [2Fe-2S] domain VV93_v1c38690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV93_v1c38690 PF18267 Rubredoxin NAD+ reductase C-terminal domain VV93_v1c38690 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c38690 PF04324 BFD-like [2Fe-2S] binding domain VV93_v1c38690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV93_v1c38700 PF17200 Single Cache domain 2 VV93_v1c38700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c38700 PF00672 HAMP domain VV93_v1c38740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c38740 PF01627 Hpt domain VV93_v1c38740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c38740 PF00072 Response regulator receiver domain VV93_v1c38740 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c38740 PF00672 HAMP domain VV93_v1c38750 PF01739 CheR methyltransferase, SAM binding domain VV93_v1c38750 PF03705 CheR methyltransferase, all-alpha domain VV93_v1c38760 PF01339 CheB methylesterase VV93_v1c38770 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c38770 PF00563 EAL domain VV93_v1c38770 PF01590 GAF domain VV93_v1c38770 PF00360 Phytochrome region VV93_v1c38790 PF00491 Arginase family VV93_v1c38800 PF00270 DEAD/DEAH box helicase VV93_v1c38800 PF00271 Helicase conserved C-terminal domain VV93_v1c38820 PF07683 Cobalamin synthesis protein cobW C-terminal domain VV93_v1c38820 PF02492 CobW/HypB/UreG, nucleotide-binding domain VV93_v1c38840 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c38870 PF18267 Rubredoxin NAD+ reductase C-terminal domain VV93_v1c38870 PF13806 Rieske-like [2Fe-2S] domain VV93_v1c38870 PF04324 BFD-like [2Fe-2S] binding domain VV93_v1c38870 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c38870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV93_v1c38870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV93_v1c38880 PF00005 ABC transporter VV93_v1c38890 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c38900 PF00005 ABC transporter VV93_v1c38910 PF03861 ANTAR domain VV93_v1c38910 PF08376 Nitrate and nitrite sensing VV93_v1c38920 PF01738 Dienelactone hydrolase family VV93_v1c38930 PF02885 Glycosyl transferase family, helical bundle domain VV93_v1c38930 PF00591 Glycosyl transferase family, a/b domain VV93_v1c38940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_v1c38940 PF14824 Sirohaem biosynthesis protein central VV93_v1c38940 PF10414 Sirohaem synthase dimerisation region VV93_v1c38950 PF04324 BFD-like [2Fe-2S] binding domain VV93_v1c38950 PF00384 Molybdopterin oxidoreductase VV93_v1c38950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV93_v1c38950 PF01568 Molydopterin dinucleotide binding domain VV93_v1c38960 PF00583 Acetyltransferase (GNAT) family VV93_v1c38970 PF00128 Alpha amylase, catalytic domain VV93_v1c38980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c38980 PF00672 HAMP domain VV93_v1c38990 PF00672 HAMP domain VV93_v1c38990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c39010 PF00652 Ricin-type beta-trefoil lectin domain VV93_v1c39010 PF07968 Leukocidin/Hemolysin toxin family VV93_v1c39020 PF07690 Major Facilitator Superfamily VV93_v1c39040 PF03009 Glycerophosphoryl diester phosphodiesterase family VV93_v1c39050 PF01523 Putative modulator of DNA gyrase VV93_v1c39070 PF07963 Prokaryotic N-terminal methylation motif VV93_v1c39070 PF08334 Type II secretion system (T2SS), protein G VV93_v1c39080 PF03606 C4-dicarboxylate anaerobic carrier VV93_v1c39090 PF04011 LemA family VV93_v1c39100 PF01435 Peptidase family M48 VV93_v1c39140 PF03527 RHS protein VV93_v1c39150 PF04634 Protein of unknown function, DUF600 VV93_v1c39170 PF13737 Transposase DDE domain VV93_v1c39190 PF03527 RHS protein VV93_v1c39220 PF04717 Type VI secretion system, phage-baseplate injector VV93_v1c39240 PF07724 AAA domain (Cdc48 subfamily) VV93_v1c39240 PF00004 ATPase family associated with various cellular activities (AAA) VV93_v1c39240 PF17871 AAA lid domain VV93_v1c39240 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_v1c39380 PF13677 Membrane MotB of proton-channel complex MotA/MotB VV93_v1c39380 PF00691 OmpA family VV93_v1c39420 PF03793 PASTA domain VV93_v1c39420 PF00069 Protein kinase domain VV93_v1c39460 PF12843 Putative quorum-sensing-regulated virulence factor VV93_v1c39490 PF00563 EAL domain VV93_v1c39490 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c39490 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c39500 PF01329 Pterin 4 alpha carbinolamine dehydratase VV93_v1c39510 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VV93_v1c39520 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c39520 PF00501 AMP-binding enzyme VV93_v1c39540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c39540 PF03466 LysR substrate binding domain VV93_v1c39560 PF00892 EamA-like transporter family VV93_v1c39600 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c39600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c39600 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c39610 PF11849 Domain of unknown function (DUF3369) VV93_v1c39630 PF00962 Adenosine/AMP deaminase VV93_v1c39640 PF00676 Dehydrogenase E1 component VV93_v1c39650 PF02780 Transketolase, C-terminal domain VV93_v1c39650 PF02779 Transketolase, pyrimidine binding domain VV93_v1c39660 PF00364 Biotin-requiring enzyme VV93_v1c39660 PF02817 e3 binding domain VV93_v1c39660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV93_v1c39670 PF01012 Electron transfer flavoprotein domain VV93_v1c39670 PF00766 Electron transfer flavoprotein FAD-binding domain VV93_v1c39680 PF01012 Electron transfer flavoprotein domain VV93_v1c39710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c39710 PF00672 HAMP domain VV93_v1c39720 PF00842 Alanine racemase, C-terminal domain VV93_v1c39720 PF01168 Alanine racemase, N-terminal domain VV93_v1c39730 PF16671 Actin cross-linking domain VV93_v1c39730 PF12146 Serine aminopeptidase, S33 VV93_v1c39730 PF11647 Membrane Localization Domain VV93_v1c39730 PF11713 Peptidase C80 family VV93_v1c39730 PF07634 RtxA repeat VV93_v1c39740 PF02794 RTX toxin acyltransferase family VV93_v1c39760 PF03412 Peptidase C39 family VV93_v1c39760 PF00664 ABC transporter transmembrane region VV93_v1c39760 PF00005 ABC transporter VV93_v1c39780 PF00005 ABC transporter VV93_v1c39780 PF03412 Peptidase C39 family VV93_v1c39780 PF00664 ABC transporter transmembrane region VV93_v1c39800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_v1c39800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV93_v1c39810 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c39820 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c39830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_v1c39830 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_v1c39830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_v1c39840 PF00171 Aldehyde dehydrogenase family VV93_v1c39850 PF02803 Thiolase, C-terminal domain VV93_v1c39850 PF00108 Thiolase, N-terminal domain VV93_v1c39870 PF09278 MerR, DNA binding VV93_v1c39870 PF00376 MerR family regulatory protein VV93_v1c39880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_v1c39880 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_v1c39880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_v1c39890 PF01039 Carboxyl transferase domain VV93_v1c39900 PF00378 Enoyl-CoA hydratase/isomerase VV93_v1c39910 PF00682 HMGL-like VV93_v1c39920 PF10417 C-terminal domain of 1-Cys peroxiredoxin VV93_v1c39920 PF00578 AhpC/TSA family VV93_v1c39930 PF13192 Thioredoxin domain VV93_v1c39930 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_v1c39940 PF00313 'Cold-shock' DNA-binding domain VV93_v1c39980 PF01699 Sodium/calcium exchanger protein VV93_v1c39990 PF00440 Bacterial regulatory proteins, tetR family VV93_v1c39990 PF16925 Tetracyclin repressor-like, C-terminal domain VV93_v1c40000 PF16884 N-terminal domain of oxidoreductase VV93_v1c40000 PF00107 Zinc-binding dehydrogenase VV93_v1c40030 PF07690 Major Facilitator Superfamily VV93_v1c40040 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c40040 PF00072 Response regulator receiver domain VV93_v1c40050 PF07730 Histidine kinase VV93_v1c40050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c40050 PF05231 MASE1 VV93_v1c40060 PF07690 Major Facilitator Superfamily VV93_v1c40070 PF01238 Phosphomannose isomerase type I VV93_v1c40080 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c40100 PF03889 Alternative ribosome-rescue factor A VV93_v1c40110 PF00313 'Cold-shock' DNA-binding domain VV93_v1c40170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_v1c40170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV93_v1c40180 PF13419 Haloacid dehalogenase-like hydrolase VV93_v1c40190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c40190 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c40190 PF00672 HAMP domain VV93_v1c40200 PF00873 AcrB/AcrD/AcrF family VV93_v1c40210 PF13533 Biotin-lipoyl like VV93_v1c40220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_v1c40230 PF07687 Peptidase dimerisation domain VV93_v1c40230 PF01546 Peptidase family M20/M25/M40 VV93_v1c40250 PF00248 Aldo/keto reductase family VV93_v1c40290 PF00654 Voltage gated chloride channel VV93_v1c40310 PF01566 Natural resistance-associated macrophage protein VV93_v1c40320 PF01227 GTP cyclohydrolase I VV93_v1c40330 PF00994 Probable molybdopterin binding domain VV93_v1c40330 PF03454 MoeA C-terminal region (domain IV) VV93_v1c40330 PF03453 MoeA N-terminal region (domain I and II) VV93_v1c40340 PF00899 ThiF family VV93_v1c40360 PF00581 Rhodanese-like domain VV93_v1c40370 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c40370 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c40370 PF00563 EAL domain VV93_v1c40380 PF08329 Chitinase A, N-terminal domain VV93_v1c40380 PF00704 Glycosyl hydrolases family 18 VV93_v1c40400 PF00923 Transaldolase/Fructose-6-phosphate aldolase VV93_v1c40410 PF02780 Transketolase, C-terminal domain VV93_v1c40410 PF00456 Transketolase, thiamine diphosphate binding domain VV93_v1c40410 PF02779 Transketolase, pyrimidine binding domain VV93_v1c40430 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c40430 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c40430 PF00563 EAL domain VV93_v1c40440 PF08447 PAS fold VV93_v1c40440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c40450 PF00793 DAHP synthetase I family VV93_v1c40460 PF00691 OmpA family VV93_v1c40460 PF13488 Glycine zipper VV93_v1c40470 PF01040 UbiA prenyltransferase family VV93_v1c40480 PF02628 Cytochrome oxidase assembly protein VV93_v1c40520 PF00510 Cytochrome c oxidase subunit III VV93_v1c40530 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VV93_v1c40540 PF00115 Cytochrome C and Quinol oxidase polypeptide I VV93_v1c40550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VV93_v1c40550 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VV93_v1c40560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_v1c40560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_v1c40560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_v1c40560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_v1c40580 PF01810 LysE type translocator VV93_v1c40620 PF01557 Fumarylacetoacetate (FAA) hydrolase family VV93_v1c40630 PF01047 MarR family VV93_v1c40640 PF02566 OsmC-like protein VV93_v1c40660 PF00578 AhpC/TSA family VV93_v1c40680 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c40680 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c40680 PF00563 EAL domain VV93_v1c40690 PF00892 EamA-like transporter family VV93_v1c40700 PF00462 Glutaredoxin VV93_v1c40730 PF07690 Major Facilitator Superfamily VV93_v1c40740 PF03466 LysR substrate binding domain VV93_v1c40740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c40750 PF01590 GAF domain VV93_v1c40750 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c40750 PF00360 Phytochrome region VV93_v1c40750 PF00563 EAL domain VV93_v1c40760 PF01042 Endoribonuclease L-PSP VV93_v1c40780 PF02838 Glycosyl hydrolase family 20, domain 2 VV93_v1c40780 PF00728 Glycosyl hydrolase family 20, catalytic domain VV93_v1c40790 PF00474 Sodium:solute symporter family VV93_v1c40810 PF07969 Amidohydrolase family VV93_v1c40830 PF01418 Helix-turn-helix domain, rpiR family VV93_v1c40830 PF02685 Glucokinase VV93_v1c40830 PF01380 SIS domain VV93_v1c40850 PF00005 ABC transporter VV93_v1c40870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VV93_v1c40890 PF12706 Beta-lactamase superfamily domain VV93_v1c40930 PF01047 MarR family VV93_v1c40940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_v1c40960 PF00270 DEAD/DEAH box helicase VV93_v1c40960 PF00271 Helicase conserved C-terminal domain VV93_v1c40980 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_v1c41010 PF03372 Endonuclease/Exonuclease/phosphatase family VV93_v1c41030 PF00583 Acetyltransferase (GNAT) family VV93_v1c41040 PF14760 Rnk N-terminus VV93_v1c41040 PF01272 Transcription elongation factor, GreA/GreB, C-term VV93_v1c41090 PF00478 IMP dehydrogenase / GMP reductase domain VV93_v1c41110 PF01256 Carbohydrate kinase VV93_v1c41110 PF03853 YjeF-related protein N-terminus VV93_v1c41150 PF00196 Bacterial regulatory proteins, luxR family VV93_v1c41150 PF00072 Response regulator receiver domain VV93_v1c41160 PF00672 HAMP domain VV93_v1c41160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c41160 PF07730 Histidine kinase VV93_v1c41160 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VV93_v1c41170 PF13187 4Fe-4S dicluster domain VV93_v1c41170 PF12838 4Fe-4S dicluster domain VV93_v1c41190 PF00384 Molybdopterin oxidoreductase VV93_v1c41190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV93_v1c41190 PF01568 Molydopterin dinucleotide binding domain VV93_v1c41200 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VV93_v1c41210 PF03264 NapC/NirT cytochrome c family, N-terminal region VV93_v1c41230 PF07646 Kelch motif VV93_v1c41240 PF01344 Kelch motif VV93_v1c41250 PF01418 Helix-turn-helix domain, rpiR family VV93_v1c41250 PF01380 SIS domain VV93_v1c41260 PF00701 Dihydrodipicolinate synthetase family VV93_v1c41270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_v1c41280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV93_v1c41290 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_v1c41300 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VV93_v1c41310 PF00480 ROK family VV93_v1c41320 PF01979 Amidohydrolase family VV93_v1c41340 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VV93_v1c41340 PF00561 alpha/beta hydrolase fold VV93_v1c41360 PF00108 Thiolase, N-terminal domain VV93_v1c41360 PF02803 Thiolase, C-terminal domain VV93_v1c41370 PF00106 short chain dehydrogenase VV93_v1c41380 PF02355 Protein export membrane protein VV93_v1c41380 PF07549 SecD/SecF GG Motif VV93_v1c41390 PF02355 Protein export membrane protein VV93_v1c41390 PF13721 SecD export protein N-terminal TM region VV93_v1c41390 PF07549 SecD/SecF GG Motif VV93_v1c41430 PF01037 Lrp/AsnC ligand binding domain VV93_v1c41460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c41460 PF00072 Response regulator receiver domain VV93_v1c41460 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c41460 PF09308 LuxQ, periplasmic VV93_v1c41470 PF13407 Periplasmic binding protein domain VV93_v1c41490 PF01541 GIY-YIG catalytic domain VV93_v1c41500 PF04337 Protein of unknown function, DUF480 VV93_v1c41520 PF04363 Protein of unknown function (DUF496) VV93_v1c41530 PF01554 MatE VV93_v1c41540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c41540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c41540 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c41540 PF00072 Response regulator receiver domain VV93_v1c41540 PF01627 Hpt domain VV93_v1c41540 PF00672 HAMP domain VV93_v1c41570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_v1c41570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_v1c41590 PF03466 LysR substrate binding domain VV93_v1c41590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c41610 PF08534 Redoxin VV93_v1c41610 PF00462 Glutaredoxin VV93_v1c41630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c41630 PF03466 LysR substrate binding domain VV93_v1c41640 PF01037 Lrp/AsnC ligand binding domain VV93_v1c41650 PF13520 Amino acid permease VV93_v1c41660 PF13230 Glutamine amidotransferases class-II VV93_v1c41670 PF00155 Aminotransferase class I and II VV93_v1c41670 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c41690 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c41690 PF16527 Two-component sensor protein CpxA, periplasmic domain VV93_v1c41690 PF00672 HAMP domain VV93_v1c41690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c41700 PF00072 Response regulator receiver domain VV93_v1c41700 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c41750 PF00571 CBS domain VV93_v1c41750 PF03448 MgtE intracellular N domain VV93_v1c41750 PF01769 Divalent cation transporter VV93_v1c41760 PF12833 Helix-turn-helix domain VV93_v1c41770 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VV93_v1c41780 PF07969 Amidohydrolase family VV93_v1c41790 PF05362 Lon protease (S16) C-terminal proteolytic domain VV93_v1c41790 PF13654 AAA domain VV93_v1c41810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c41810 PF00005 ABC transporter VV93_v1c41820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VV93_v1c41820 PF00326 Prolyl oligopeptidase family VV93_v1c41830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c41830 PF03466 LysR substrate binding domain VV93_v1c41840 PF02652 L-lactate permease VV93_v1c41850 PF02754 Cysteine-rich domain VV93_v1c41860 PF11870 Domain of unknown function (DUF3390) VV93_v1c41860 PF02589 LUD domain VV93_v1c41860 PF13183 4Fe-4S dicluster domain VV93_v1c41870 PF02589 LUD domain VV93_v1c41910 PF07690 Major Facilitator Superfamily VV93_v1c41970 PF02378 Phosphotransferase system, EIIC VV93_v1c42000 PF17185 NlpE C-terminal OB domain VV93_v1c42000 PF04170 NlpE N-terminal domain VV93_v1c42010 PF00005 ABC transporter VV93_v1c42020 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c42030 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c42040 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c42070 PF08448 PAS fold VV93_v1c42070 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c42070 PF00563 EAL domain VV93_v1c42080 PF17996 Carbohydrate esterase 2 N-terminal VV93_v1c42080 PF13472 GDSL-like Lipase/Acylhydrolase family VV93_v1c42100 PF00672 HAMP domain VV93_v1c42100 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c42100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c42110 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_v1c42150 PF01648 4'-phosphopantetheinyl transferase superfamily VV93_v1c42150 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VV93_v1c42160 PF07993 Male sterility protein VV93_v1c42160 PF00668 Condensation domain VV93_v1c42160 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c42160 PF00501 AMP-binding enzyme VV93_v1c42160 PF00550 Phosphopantetheine attachment site VV93_v1c42170 PF00501 AMP-binding enzyme VV93_v1c42170 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c42170 PF00668 Condensation domain VV93_v1c42170 PF00550 Phosphopantetheine attachment site VV93_v1c42170 PF00975 Thioesterase domain VV93_v1c42180 PF00793 DAHP synthetase I family VV93_v1c42200 PF00425 chorismate binding enzyme VV93_v1c42210 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c42210 PF00501 AMP-binding enzyme VV93_v1c42220 PF04954 Siderophore-interacting protein VV93_v1c42220 PF08021 Siderophore-interacting FAD-binding domain VV93_v1c42230 PF00857 Isochorismatase family VV93_v1c42230 PF00550 Phosphopantetheine attachment site VV93_v1c42250 PF00501 AMP-binding enzyme VV93_v1c42250 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c42270 PF01497 Periplasmic binding protein VV93_v1c42280 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c42290 PF00501 AMP-binding enzyme VV93_v1c42290 PF13193 AMP-binding enzyme C-terminal domain VV93_v1c42290 PF00550 Phosphopantetheine attachment site VV93_v1c42290 PF00975 Thioesterase domain VV93_v1c42290 PF00668 Condensation domain VV93_v1c42300 PF18030 RimK PreATP-grasp domain VV93_v1c42300 PF08443 RimK-like ATP-grasp domain VV93_v1c42310 PF08443 RimK-like ATP-grasp domain VV93_v1c42310 PF18030 RimK PreATP-grasp domain VV93_v1c42320 PF00753 Metallo-beta-lactamase superfamily VV93_v1c42350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c42360 PF00873 AcrB/AcrD/AcrF family VV93_v1c42380 PF01212 Beta-eliminating lyase VV93_v1c42390 PF03222 Tryptophan/tyrosine permease family VV93_v1c42400 PF16326 ABC transporter C-terminal domain VV93_v1c42400 PF00005 ABC transporter VV93_v1c42400 PF12848 ABC transporter VV93_v1c42420 PF00970 Oxidoreductase FAD-binding domain VV93_v1c42420 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_v1c42420 PF00175 Oxidoreductase NAD-binding domain VV93_v1c42430 PF00356 Bacterial regulatory proteins, lacI family VV93_v1c42440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c42460 PF03611 PTS system sugar-specific permease component VV93_v1c42470 PF01327 Polypeptide deformylase VV93_v1c42500 PF01595 Cyclin M transmembrane N-terminal domain VV93_v1c42500 PF00571 CBS domain VV93_v1c42500 PF03471 Transporter associated domain VV93_v1c42520 PF00171 Aldehyde dehydrogenase family VV93_v1c42530 PF00158 Sigma-54 interaction domain VV93_v1c42530 PF02954 Bacterial regulatory protein, Fis family VV93_v1c42530 PF01590 GAF domain VV93_v1c42540 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c42540 PF00563 EAL domain VV93_v1c42540 PF03707 Bacterial signalling protein N terminal repeat VV93_v1c42550 PF13407 Periplasmic binding protein domain VV93_v1c42560 PF14497 Glutathione S-transferase, C-terminal domain VV93_v1c42560 PF02798 Glutathione S-transferase, N-terminal domain VV93_v1c42570 PF03466 LysR substrate binding domain VV93_v1c42570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c42580 PF02567 Phenazine biosynthesis-like protein VV93_v1c42630 PF01479 S4 domain VV93_v1c42630 PF00579 tRNA synthetases class I (W and Y) VV93_v1c42640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VV93_v1c42640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VV93_v1c42650 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c42670 PF13533 Biotin-lipoyl like VV93_v1c42690 PF14863 Alkyl sulfatase dimerisation VV93_v1c42690 PF14864 Alkyl sulfatase C-terminal VV93_v1c42690 PF00753 Metallo-beta-lactamase superfamily VV93_v1c42710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c42710 PF03466 LysR substrate binding domain VV93_v1c42720 PF00884 Sulfatase VV93_v1c42720 PF08019 Phosphoethanolamine transferase EptA/EptB VV93_v1c42760 PF01758 Sodium Bile acid symporter family VV93_v1c42770 PF01022 Bacterial regulatory protein, arsR family VV93_v1c42810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c42810 PF03466 LysR substrate binding domain VV93_v1c42840 PF07687 Peptidase dimerisation domain VV93_v1c42840 PF01546 Peptidase family M20/M25/M40 VV93_v1c42850 PF07670 Nucleoside recognition VV93_v1c42860 PF07670 Nucleoside recognition VV93_v1c42880 PF00128 Alpha amylase, catalytic domain VV93_v1c42890 PF14583 Oligogalacturonate lyase VV93_v1c42900 PF00474 Sodium:solute symporter family VV93_v1c42910 PF13229 Right handed beta helix region VV93_v1c42930 PF00474 Sodium:solute symporter family VV93_v1c42940 PF06917 Periplasmic pectate lyase VV93_v1c42960 PF01081 KDPG and KHG aldolase VV93_v1c42970 PF00294 pfkB family carbohydrate kinase VV93_v1c42980 PF00892 EamA-like transporter family VV93_v1c43000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c43000 PF03466 LysR substrate binding domain VV93_v1c43020 PF00144 Beta-lactamase VV93_v1c43030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c43030 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c43060 PF07883 Cupin domain VV93_v1c43070 PF10688 Bacterial inner membrane protein VV93_v1c43090 PF01614 Bacterial transcriptional regulator VV93_v1c43090 PF09339 IclR helix-turn-helix domain VV93_v1c43140 PF00583 Acetyltransferase (GNAT) family VV93_v1c43140 PF00795 Carbon-nitrogen hydrolase VV93_v1c43180 PF00924 Mechanosensitive ion channel VV93_v1c43210 PF00873 AcrB/AcrD/AcrF family VV93_v1c43220 PF13533 Biotin-lipoyl like VV93_v1c43250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c43250 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c43250 PF00672 HAMP domain VV93_v1c43250 PF01627 Hpt domain VV93_v1c43250 PF00072 Response regulator receiver domain VV93_v1c43250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c43260 PF00293 NUDIX domain VV93_v1c43270 PF01161 Phosphatidylethanolamine-binding protein VV93_v1c43280 PF12833 Helix-turn-helix domain VV93_v1c43290 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VV93_v1c43300 PF00376 MerR family regulatory protein VV93_v1c43300 PF09278 MerR, DNA binding VV93_v1c43320 PF00367 phosphotransferase system, EIIB VV93_v1c43320 PF02378 Phosphotransferase system, EIIC VV93_v1c43330 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c43330 PF00072 Response regulator receiver domain VV93_v1c43340 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c43340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c43340 PF00672 HAMP domain VV93_v1c43370 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c43370 PF17151 Periplasmic sensor domain VV93_v1c43380 PF00583 Acetyltransferase (GNAT) family VV93_v1c43390 PF14492 Elongation Factor G, domain II VV93_v1c43390 PF03764 Elongation factor G, domain IV VV93_v1c43390 PF00009 Elongation factor Tu GTP binding domain VV93_v1c43390 PF03144 Elongation factor Tu domain 2 VV93_v1c43390 PF00679 Elongation factor G C-terminus VV93_v1c43420 PF02001 Protein of unknown function DUF134 VV93_v1c43440 PF00034 Cytochrome c VV93_v1c43440 PF03150 Di-haem cytochrome c peroxidase VV93_v1c43450 PF06942 GlpM protein VV93_v1c43470 PF02311 AraC-like ligand binding domain VV93_v1c43470 PF12833 Helix-turn-helix domain VV93_v1c43480 PF07690 Major Facilitator Superfamily VV93_v1c43520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV93_v1c43530 PF00892 EamA-like transporter family VV93_v1c43540 PF00175 Oxidoreductase NAD-binding domain VV93_v1c43540 PF00970 Oxidoreductase FAD-binding domain VV93_v1c43560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c43560 PF03466 LysR substrate binding domain VV93_v1c43580 PF00881 Nitroreductase family VV93_v1c43590 PF00561 alpha/beta hydrolase fold VV93_v1c43600 PF00270 DEAD/DEAH box helicase VV93_v1c43600 PF00271 Helicase conserved C-terminal domain VV93_v1c43660 PF04151 Bacterial pre-peptidase C-terminal domain VV93_v1c43660 PF02868 Thermolysin metallopeptidase, alpha-helical domain VV93_v1c43660 PF01447 Thermolysin metallopeptidase, catalytic domain VV93_v1c43660 PF07504 Fungalysin/Thermolysin Propeptide Motif VV93_v1c43660 PF03413 Peptidase propeptide and YPEB domain VV93_v1c43670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_v1c43670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_v1c43690 PF13599 Pentapeptide repeats (9 copies) VV93_v1c43710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c43710 PF12729 Four helix bundle sensory module for signal transduction VV93_v1c43710 PF00672 HAMP domain VV93_v1c43720 PF01627 Hpt domain VV93_v1c43720 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c43720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c43720 PF00672 HAMP domain VV93_v1c43720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_v1c43720 PF00072 Response regulator receiver domain VV93_v1c43730 PF00072 Response regulator receiver domain VV93_v1c43750 PF01266 FAD dependent oxidoreductase VV93_v1c43780 PF02954 Bacterial regulatory protein, Fis family VV93_v1c43780 PF00072 Response regulator receiver domain VV93_v1c43780 PF00158 Sigma-54 interaction domain VV93_v1c43790 PF02743 Cache domain VV93_v1c43790 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c43790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c43810 PF14864 Alkyl sulfatase C-terminal VV93_v1c43810 PF00753 Metallo-beta-lactamase superfamily VV93_v1c43810 PF14863 Alkyl sulfatase dimerisation VV93_v1c43830 PF00072 Response regulator receiver domain VV93_v1c43830 PF00486 Transcriptional regulatory protein, C terminal VV93_v1c43840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c43840 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c43840 PF00672 HAMP domain VV93_v1c43850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c43850 PF03466 LysR substrate binding domain VV93_v1c43860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_v1c43860 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c43880 PF08267 Cobalamin-independent synthase, N-terminal domain VV93_v1c43880 PF01717 Cobalamin-independent synthase, Catalytic domain VV93_v1c43900 PF17158 Membrane-associated sensor, integral membrane domain VV93_v1c43900 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c43960 PF05785 Rho-activating domain of cytotoxic necrotizing factor VV93_v1c43960 PF18807 Tripartite Tc toxins repeat VV93_v1c43980 PF11490 DNA polymerase III polC-type N-terminus II VV93_v1c43980 PF14579 Helix-hairpin-helix motif VV93_v1c43980 PF02811 PHP domain VV93_v1c43980 PF00929 Exonuclease VV93_v1c43980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_v1c43980 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_v1c43990 PF00005 ABC transporter VV93_v1c43990 PF02687 FtsX-like permease family VV93_v1c43990 PF12704 MacB-like periplasmic core domain VV93_v1c44000 PF12704 MacB-like periplasmic core domain VV93_v1c44000 PF02687 FtsX-like permease family VV93_v1c44000 PF00005 ABC transporter VV93_v1c44010 PF02687 FtsX-like permease family VV93_v1c44010 PF00005 ABC transporter VV93_v1c44010 PF12704 MacB-like periplasmic core domain VV93_v1c44060 PF00005 ABC transporter VV93_v1c44070 PF01497 Periplasmic binding protein VV93_v1c44080 PF01032 FecCD transport family VV93_v1c44100 PF07715 TonB-dependent Receptor Plug Domain VV93_v1c44100 PF00593 TonB dependent receptor VV93_v1c44110 PF01116 Fructose-bisphosphate aldolase class-II VV93_v1c44120 PF01979 Amidohydrolase family VV93_v1c44150 PF03610 PTS system fructose IIA component VV93_v1c44160 PF03613 PTS system mannose/fructose/sorbose family IID component VV93_v1c44170 PF03609 PTS system sorbose-specific iic component VV93_v1c44180 PF03830 PTS system sorbose subfamily IIB component VV93_v1c44190 PF01380 SIS domain VV93_v1c44200 PF08013 Tagatose 6 phosphate kinase VV93_v1c44210 PF08220 DeoR-like helix-turn-helix domain VV93_v1c44210 PF00455 DeoR C terminal sensor domain VV93_v1c44220 PF00455 DeoR C terminal sensor domain VV93_v1c44220 PF08220 DeoR-like helix-turn-helix domain VV93_v1c44230 PF12792 CSS motif domain associated with EAL VV93_v1c44230 PF00563 EAL domain VV93_v1c44240 PF00892 EamA-like transporter family VV93_v1c44250 PF12852 Cupin VV93_v1c44250 PF12833 Helix-turn-helix domain VV93_v1c44260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VV93_v1c44260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV93_v1c44270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c44270 PF03466 LysR substrate binding domain VV93_v1c44280 PF00753 Metallo-beta-lactamase superfamily VV93_v1c44280 PF14864 Alkyl sulfatase C-terminal VV93_v1c44280 PF14863 Alkyl sulfatase dimerisation VV93_v1c44330 PF01641 SelR domain VV93_v1c44340 PF01625 Peptide methionine sulfoxide reductase VV93_v1c44380 PF00672 HAMP domain VV93_v1c44380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c44410 PF00462 Glutaredoxin VV93_v1c44420 PF12833 Helix-turn-helix domain VV93_v1c44420 PF12852 Cupin VV93_v1c44450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c44450 PF03466 LysR substrate binding domain VV93_v1c44460 PF02056 Family 4 glycosyl hydrolase VV93_v1c44460 PF11975 Family 4 glycosyl hydrolase C-terminal domain VV93_v1c44500 PF03473 MOSC domain VV93_v1c44500 PF03475 3-alpha domain VV93_v1c44540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c44540 PF03466 LysR substrate binding domain VV93_v1c44570 PF00271 Helicase conserved C-terminal domain VV93_v1c44570 PF00270 DEAD/DEAH box helicase VV93_v1c44580 PF03786 D-mannonate dehydratase (UxuA) VV93_v1c44590 PF00392 Bacterial regulatory proteins, gntR family VV93_v1c44590 PF07729 FCD domain VV93_v1c44600 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_v1c44610 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV93_v1c44620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_v1c44630 PF08125 Mannitol dehydrogenase C-terminal domain VV93_v1c44630 PF01232 Mannitol dehydrogenase Rossmann domain VV93_v1c44640 PF02614 Glucuronate isomerase VV93_v1c44650 PF00294 pfkB family carbohydrate kinase VV93_v1c44660 PF01081 KDPG and KHG aldolase VV93_v1c44670 PF10688 Bacterial inner membrane protein VV93_v1c44680 PF03466 LysR substrate binding domain VV93_v1c44680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_v1c44700 PF13417 Glutathione S-transferase, N-terminal domain VV93_v1c44700 PF04399 Glutaredoxin 2, C terminal domain VV93_v1c44710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VV93_v1c44730 PF08220 DeoR-like helix-turn-helix domain VV93_v1c44730 PF00455 DeoR C terminal sensor domain VV93_v1c44740 PF03611 PTS system sugar-specific permease component VV93_v1c44750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_v1c44760 PF00596 Class II Aldolase and Adducin N-terminal domain VV93_v1c44780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VV93_v1c44790 PF01261 Xylose isomerase-like TIM barrel VV93_v1c44820 PF00664 ABC transporter transmembrane region VV93_v1c44820 PF00005 ABC transporter VV93_v1c44830 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain VV93_v1c44830 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VV93_v1c44830 PF02278 Polysaccharide lyase family 8, super-sandwich domain VV93_v1c44840 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain VV93_v1c44840 PF17386 Lacto-N-biose phosphorylase C-terminal domain VV93_v1c44840 PF17385 Lacto-N-biose phosphorylase central domain VV93_v1c44850 PF07470 Glycosyl Hydrolase Family 88 VV93_v1c44870 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VV93_v1c44870 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VV93_v1c44880 PF16363 GDP-mannose 4,6 dehydratase VV93_v1c44890 PF00916 Sulfate permease family VV93_v1c44890 PF01740 STAS domain VV93_v1c44910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c44910 PF00672 HAMP domain VV93_v1c44920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_v1c44920 PF00005 ABC transporter VV93_v1c44930 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c44930 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_v1c44940 PF00528 Binding-protein-dependent transport system inner membrane component VV93_v1c44950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_v1c44970 PF16347 Domain of unknown function (DUF4976) VV93_v1c44980 PF13186 Iron-sulfur cluster-binding domain VV93_v1c44980 PF04055 Radical SAM superfamily VV93_v1c44990 PF00884 Sulfatase VV93_v1c45000 PF00884 Sulfatase VV93_v1c45000 PF16385 Domain of unknown function VV93_v1c45010 PF02278 Polysaccharide lyase family 8, super-sandwich domain VV93_v1c45010 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VV93_v1c45010 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain VV93_v1c45030 PF01037 Lrp/AsnC ligand binding domain VV93_v1c45060 PF00474 Sodium:solute symporter family VV93_v1c45080 PF00171 Aldehyde dehydrogenase family VV93_v1c45080 PF01619 Proline dehydrogenase VV93_v1c45080 PF14850 DNA-binding domain of Proline dehydrogenase VV93_v1c45080 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VV93_v1c45090 PF12833 Helix-turn-helix domain VV93_v1c45120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VV93_v1c45120 PF01243 Pyridoxamine 5'-phosphate oxidase VV93_v1c45130 PF00512 His Kinase A (phospho-acceptor) domain VV93_v1c45130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c45130 PF02743 Cache domain VV93_v1c45140 PF00072 Response regulator receiver domain VV93_v1c45140 PF02954 Bacterial regulatory protein, Fis family VV93_v1c45140 PF00158 Sigma-54 interaction domain VV93_v1c45150 PF00529 HlyD membrane-fusion protein of T1SS VV93_v1c45180 PF00664 ABC transporter transmembrane region VV93_v1c45180 PF03412 Peptidase C39 family VV93_v1c45180 PF00005 ABC transporter VV93_v1c45210 PF00118 TCP-1/cpn60 chaperonin family VV93_v1c45220 PF00166 Chaperonin 10 Kd subunit VV93_v1c45230 PF14602 Hexapeptide repeat of succinyl-transferase VV93_v1c45230 PF12464 Maltose acetyltransferase VV93_v1c45250 PF01029 NusB family VV93_v1c45250 PF01189 16S rRNA methyltransferase RsmB/F VV93_v1c45260 PF01418 Helix-turn-helix domain, rpiR family VV93_v1c45260 PF01380 SIS domain VV93_v1c45270 PF13580 SIS domain VV93_v1c45280 PF02378 Phosphotransferase system, EIIC VV93_v1c45280 PF00367 phosphotransferase system, EIIB VV93_v1c45300 PF01590 GAF domain VV93_v1c45300 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c45300 PF00989 PAS fold VV93_v1c45300 PF00563 EAL domain VV93_v1c45310 PF00300 Histidine phosphatase superfamily (branch 1) VV93_v1c45320 PF01752 Collagenase VV93_v1c45320 PF08453 Peptidase family M9 N-terminal VV93_v1c45320 PF04151 Bacterial pre-peptidase C-terminal domain VV93_v1c45340 PF17848 Acetyl-coA carboxylase zinc finger domain VV93_v1c45340 PF01039 Carboxyl transferase domain VV93_v1c45400 PF00990 Diguanylate cyclase, GGDEF domain VV93_v1c45400 PF00072 Response regulator receiver domain VV93_v1c45420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c45420 PF00672 HAMP domain VV93_v1c45420 PF02203 Tar ligand binding domain homologue VV93_v1c45430 PF00072 Response regulator receiver domain VV93_v1c45430 PF01339 CheB methylesterase VV93_v1c45440 PF03975 CheD chemotactic sensory transduction VV93_v1c45450 PF01739 CheR methyltransferase, SAM binding domain VV93_v1c45450 PF03705 CheR methyltransferase, all-alpha domain VV93_v1c45460 PF02203 Tar ligand binding domain homologue VV93_v1c45460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_v1c45460 PF00672 HAMP domain VV93_v1c45470 PF01584 CheW-like domain VV93_v1c45480 PF01584 CheW-like domain VV93_v1c45490 PF09078 CheY binding VV93_v1c45490 PF02895 Signal transducing histidine kinase, homodimeric domain VV93_v1c45490 PF01584 CheW-like domain VV93_v1c45490 PF01627 Hpt domain VV93_v1c45490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_v1c45500 PF00072 Response regulator receiver domain VV93_v1c45520 PF13718 GNAT acetyltransferase 2 VV93_v1c45520 PF05127 Helicase VV93_v1c45530 PF08775 ParB family VV93_v1c45530 PF02195 ParB-like nuclease domain VV93_v1c45540 PF13614 AAA domain VV93_v1c45540 PF18607 ParA helix turn helix domain VV93_v1c45610 PF01381 Helix-turn-helix