locus-tag	class	description
VV93_v1c00020	COG0592	DNA-directed DNA polymerase activity
VV93_v1c00040	COG0187	DNA topoisomerase II activity
VV93_v1c00050	COG0071	Belongs to the small heat shock protein (HSP20) family
VV93_v1c00070	COG3977	Valine--pyruvate aminotransferase
VV93_v1c00110	COG2119	membrane
VV93_v1c00160	COG0604	alcohol dehydrogenase
VV93_v1c00170	COG0183	Belongs to the thiolase family
VV93_v1c00190	COG1739	Uncharacterized protein family UPF0029
VV93_v1c00200	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
VV93_v1c00300	COG0583	DNA-binding transcription factor activity
VV93_v1c00320	COG2960	long-chain fatty acid transporting porin activity
VV93_v1c00330	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
VV93_v1c00340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
VV93_v1c00350	COG1309	transcriptional regulator
VV93_v1c00380	COG4172	Belongs to the ABC transporter superfamily
VV93_v1c00390	COG4166	transmembrane transport
VV93_v1c00410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
VV93_v1c00480	COG2815	serine threonine protein kinase
VV93_v1c00480	COG0515	serine threonine protein kinase
VV93_v1c00510	COG1609	Transcriptional regulator
VV93_v1c00520	COG0129	dihydroxy-acid dehydratase activity
VV93_v1c00530	COG3265	gluconokinase activity
VV93_v1c00540	COG2610	gluconate transmembrane transporter activity
VV93_v1c00550	COG0800	Aldolase
VV93_v1c00580	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
VV93_v1c00590	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
VV93_v1c00610	COG1522	sequence-specific DNA binding
VV93_v1c00620	COG5002	protein histidine kinase activity
VV93_v1c00620	COG5001	Diguanylate cyclase
VV93_v1c00660	COG0589	response to stress
VV93_v1c00670	COG1528	Iron-storage protein
VV93_v1c00690	COG2081	HI0933 family
VV93_v1c00710	COG2959	enzyme of heme biosynthesis
VV93_v1c00740	COG3072	Adenylate cyclase
VV93_v1c00760	COG0019	diaminopimelate decarboxylase activity
VV93_v1c00800	COG1011	Hydrolase
VV93_v1c00810	COG3287	FIST C domain
VV93_v1c00810	COG2200	EAL domain
VV93_v1c00810	COG2199	diguanylate cyclase activity
VV93_v1c00850	COG0561	phosphatase activity
VV93_v1c00860	COG2267	carboxylic ester hydrolase activity
VV93_v1c00870	COG1280	lysine exporter protein (LysE YggA)
VV93_v1c00880	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
VV93_v1c00890	COG0640	Transcriptional regulator
VV93_v1c00900	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
VV93_v1c00980	COG2095	MarC family integral membrane protein
VV93_v1c01000	COG0742	ribosomal rna small subunit methyltransferase
VV93_v1c01010	COG0552	protein localization to endoplasmic reticulum
VV93_v1c01020	COG2884	Cell division ATP-binding protein ftsE
VV93_v1c01030	COG2177	Part of the ABC transporter FtsEX involved in
VV93_v1c01060	COG0705	Rhomboid family
VV93_v1c01070	COG1580	Controls the rotational direction of flagella during chemotaxis
VV93_v1c01100	COG2937	Belongs to the GPAT DAPAT family
VV93_v1c01220	COG0789	Transcriptional regulator
VV93_v1c01260	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c01400	COG3335	DDE superfamily endonuclease
VV93_v1c01410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
VV93_v1c01440	COG0346	lactoylglutathione lyase activity
VV93_v1c01460	COG0371	Dehydrogenase
VV93_v1c01470	COG5492	domain, Protein
VV93_v1c01470	COG4932	domain protein
VV93_v1c01510	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
VV93_v1c01540	COG4206	TonB-dependent receptor
VV93_v1c01630	COG1322	Protein conserved in bacteria
VV93_v1c01650	COG3165	ubiquinone biosynthetic process from chorismate
VV93_v1c01670	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
VV93_v1c01690	COG0805	protein transport
VV93_v1c01710	COG0084	hydrolase, TatD family'
VV93_v1c01730	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
VV93_v1c01730	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
VV93_v1c01770	COG3078	GTPase activator activity
VV93_v1c01790	COG0635	Involved in the biosynthesis of porphyrin-containing compound
VV93_v1c01800	COG3300	MHYT domain
VV93_v1c01800	COG5001	Diguanylate cyclase
VV93_v1c01810	COG2204	response regulator
VV93_v1c01820	COG3852	Histidine kinase
VV93_v1c01840	COG0174	glutamine synthetase
VV93_v1c01880	COG1295	ribonuclease BN
VV93_v1c01900	COG0456	acetyltransferase
VV93_v1c01940	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
VV93_v1c01950	COG3031	protein transport across the cell outer membrane
VV93_v1c01970	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
VV93_v1c01980	COG1459	type II secretion system
VV93_v1c01990	COG2165	general secretion pathway protein
VV93_v1c02000	COG2165	general secretion pathway protein
VV93_v1c02010	COG2165	general secretion pathway protein
VV93_v1c02020	COG4795	General secretion pathway protein
VV93_v1c02030	COG3156	type II secretion system protein K
VV93_v1c02040	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
VV93_v1c02050	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
VV93_v1c02070	COG1218	3'(2'),5'-bisphosphate nucleotidase
VV93_v1c02080	COG0494	nUDIX hydrolase
VV93_v1c02100	COG1040	competence protein
VV93_v1c02110	COG0596	Alpha beta hydrolase
VV93_v1c02130	COG2183	response to ionizing radiation
VV93_v1c02150	COG0745	RESPONSE REGULATOR receiver
VV93_v1c02160	COG2205	protein histidine kinase activity
VV93_v1c02170	COG2233	PERMEase
VV93_v1c02180	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
VV93_v1c02190	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
VV93_v1c02200	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
VV93_v1c02250	COG0848	biopolymer transport protein
VV93_v1c02260	COG0811	peptide transport
VV93_v1c02270	COG0811	peptide transport
VV93_v1c02290	COG4206	TonB-dependent receptor
VV93_v1c02300	COG4174	ABC transporter (Permease)
VV93_v1c02310	COG4239	(ABC) transporter, permease
VV93_v1c02320	COG0747	negative chemotaxis
VV93_v1c02330	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c02340	COG4608	Belongs to the ABC transporter superfamily
VV93_v1c02410	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c02540	COG1061	Type III restriction enzyme res subunit
VV93_v1c02700	COG1561	YicC-like family, N-terminal region
VV93_v1c02730	COG1560	Kdo2-lipid A biosynthetic process
VV93_v1c02760	COG0840	transmembrane signaling receptor activity
VV93_v1c02770	COG2003	Belongs to the UPF0758 family
VV93_v1c02840	COG0859	PFAM glycosyl transferase family 9
VV93_v1c02850	COG0463	Glycosyl transferase, family 2
VV93_v1c02860	COG0859	PFAM glycosyl transferase family 9
VV93_v1c02870	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
VV93_v1c02880	COG3642	lipopolysaccharide core region biosynthetic process
VV93_v1c02890	COG3083	sulfuric ester hydrolase activity
VV93_v1c02910	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
VV93_v1c02930	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
VV93_v1c02950	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
VV93_v1c02970	COG1215	transferase activity, transferring glycosyl groups
VV93_v1c02980	COG0438	transferase activity, transferring glycosyl groups
VV93_v1c03000	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
VV93_v1c03010	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
VV93_v1c03020	COG2089	acid synthase
VV93_v1c03060	COG1083	cytidylyl-transferase
VV93_v1c03070	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c03100	COG1519	Transferase
VV93_v1c03110	COG0859	PFAM glycosyl transferase family 9
VV93_v1c03120	COG1560	Kdo2-lipid A biosynthetic process
VV93_v1c03140	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
VV93_v1c03200	COG1596	polysaccharide export
VV93_v1c03230	COG0489	protein tyrosine kinase activity
VV93_v1c03230	COG3206	protein involved in exopolysaccharide biosynthesis
VV93_v1c03240	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
VV93_v1c03330	COG0438	transferase activity, transferring glycosyl groups
VV93_v1c03340	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
VV93_v1c03360	COG2030	dehydratase
VV93_v1c03370	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
VV93_v1c03390	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
VV93_v1c03420	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
VV93_v1c03440	COG3064	Membrane
VV93_v1c03660	COG0201	protein transport
VV93_v1c03690	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
VV93_v1c03740	COG0545	Peptidyl-prolyl cis-trans isomerase
VV93_v1c03750	COG3061	Opacity-associated protein A
VV93_v1c03750	COG3266	domain, Protein
VV93_v1c03770	COG2153	protein acetylation
VV93_v1c03790	COG0737	Belongs to the 5'-nucleotidase family
VV93_v1c03800	COG1648	precorrin-2 dehydrogenase activity
VV93_v1c03800	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
VV93_v1c03820	COG2895	sulfate adenylyltransferase (ATP) activity
VV93_v1c03830	COG0471	metal ion transport
VV93_v1c03830	COG3273	potassium ion transport
VV93_v1c03890	COG1136	(ABC) transporter
VV93_v1c03890	COG0577	efflux transmembrane transporter activity
VV93_v1c03920	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
VV93_v1c03950	COG0729	surface antigen
VV93_v1c03960	COG2911	Protein conserved in bacteria
VV93_v1c03970	COG2105	PFAM AIG2 family protein
VV93_v1c04010	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
VV93_v1c04020	COG0163	prenyltransferase activity
VV93_v1c04030	COG4143	(ABC) transporter
VV93_v1c04040	COG1178	ABC-type Fe3 transport system permease component
VV93_v1c04060	COG3028	Belongs to the UPF0307 family
VV93_v1c04110	COG2239	Acts as a magnesium transporter
VV93_v1c04120	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c04130	COG1660	Displays ATPase and GTPase activities
VV93_v1c04140	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c04150	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
VV93_v1c04170	COG1137	ATPase activity
VV93_v1c04180	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
VV93_v1c04200	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
VV93_v1c04210	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
VV93_v1c04210	COG0517	IMP dehydrogenase activity
VV93_v1c04230	COG1127	ABC transporter
VV93_v1c04240	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
VV93_v1c04250	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
VV93_v1c04260	COG2854	intermembrane phospholipid transfer
VV93_v1c04280	COG5007	Belongs to the BolA IbaG family
VV93_v1c04290	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
VV93_v1c04300	COG0204	Acyl-transferase
VV93_v1c04310	COG0589	response to stress
VV93_v1c04350	COG0039	L-malate dehydrogenase activity
VV93_v1c04360	COG0142	geranyltranstransferase activity
VV93_v1c04370	COG0261	This protein binds to 23S rRNA in the presence of protein L20
VV93_v1c04400	COG2966	Psort location CytoplasmicMembrane, score
VV93_v1c04410	COG3610	response to peptide
VV93_v1c04460	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
VV93_v1c04480	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
VV93_v1c04520	COG0066	3-isopropylmalate dehydratase activity
VV93_v1c04540	COG0473	3-isopropylmalate dehydrogenase activity
VV93_v1c04600	COG1022	Amp-dependent synthetase and ligase
VV93_v1c04610	COG0028	Belongs to the TPP enzyme family
VV93_v1c04620	COG0440	acetolactate synthase activity
VV93_v1c04630	COG3706	GGDEF domain
VV93_v1c04660	COG0469	pyruvate kinase activity
VV93_v1c04670	COG1349	DNA-binding transcription factor activity
VV93_v1c04690	COG3722	fumarate hydratase activity
VV93_v1c04730	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c04730	COG2213	PTS system mannitol-specific
VV93_v1c04740	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
VV93_v1c04790	COG1518	maintenance of DNA repeat elements
VV93_v1c04900	COG2003	Belongs to the UPF0758 family
VV93_v1c04930	COG3339	Conserved Protein
VV93_v1c05020	COG0582	viral genome integration into host DNA
VV93_v1c05030	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
VV93_v1c05050	COG1610	YqeY-like protein
VV93_v1c05060	COG0828	Belongs to the bacterial ribosomal protein bS21 family
VV93_v1c05080	COG0596	Alpha beta hydrolase
VV93_v1c05100	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
VV93_v1c05110	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
VV93_v1c05130	COG0617	tRNA 3'-terminal CCA addition
VV93_v1c05140	COG3409	Peptidoglycan-binding domain 1 protein
VV93_v1c05140	COG3267	Type II secretory pathway component ExeA
VV93_v1c05150	COG4991	sh3 domain protein
VV93_v1c05160	COG0306	phosphate transporter
VV93_v1c05170	COG1392	Phosphate transport regulator
VV93_v1c05180	COG3025	triphosphatase activity
VV93_v1c05190	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
VV93_v1c05230	COG1538	Outer membrane efflux protein
VV93_v1c05240	COG0494	nUDIX hydrolase
VV93_v1c05250	COG3151	Protein conserved in bacteria
VV93_v1c05270	COG3150	esterase
VV93_v1c05290	COG0187	DNA topoisomerase II activity
VV93_v1c05310	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
VV93_v1c05320	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
VV93_v1c05330	COG3105	Protein conserved in bacteria
VV93_v1c05340	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
VV93_v1c05370	COG0723	plastoquinol--plastocyanin reductase activity
VV93_v1c05380	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
VV93_v1c05390	COG2857	Cytochrome c1
VV93_v1c05400	COG0625	glutathione transferase activity
VV93_v1c05410	COG2969	positive regulation of protein catabolic process
VV93_v1c05430	COG2823	Periplasmic or secreted lipoprotein
VV93_v1c05440	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
VV93_v1c05460	COG3107	peptidoglycan biosynthetic process
VV93_v1c05470	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
VV93_v1c05500	COG3116	cell division
VV93_v1c05510	COG0768	penicillin binding
VV93_v1c05520	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
VV93_v1c05530	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
VV93_v1c05540	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
VV93_v1c05550	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
VV93_v1c05560	COG0772	Belongs to the SEDS family
VV93_v1c05580	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
VV93_v1c05590	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
VV93_v1c05600	COG0849	cell division
VV93_v1c05610	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
VV93_v1c05640	COG0653	protein targeting
VV93_v1c05650	COG0494	nUDIX hydrolase
VV93_v1c05670	COG0505	Belongs to the CarA family
VV93_v1c05700	COG0730	response to heat
VV93_v1c05710	COG0583	DNA-binding transcription factor activity
VV93_v1c05720	COG2860	membrane
VV93_v1c05730	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
VV93_v1c05750	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
VV93_v1c05770	COG0493	'glutamate synthase
VV93_v1c05780	COG0070	glutamate synthase
VV93_v1c05780	COG0069	glutamate synthase activity
VV93_v1c05780	COG0067	glutamate synthase
VV93_v1c05800	COG0067	glutamate synthase
VV93_v1c05800	COG0069	glutamate synthase activity
VV93_v1c05800	COG0070	glutamate synthase
VV93_v1c05810	COG1242	4 iron, 4 sulfur cluster binding
VV93_v1c05820	COG5001	Diguanylate cyclase
VV93_v1c05820	COG4251	negative regulation of phosphorylation
VV93_v1c05820	COG3706	GGDEF domain
VV93_v1c05820	COG2203	Gaf domain
VV93_v1c05830	COG0784	Response regulator, receiver
VV93_v1c05830	COG2198	Histidine kinase
VV93_v1c05830	COG5002	protein histidine kinase activity
VV93_v1c05850	COG0745	RESPONSE REGULATOR receiver
VV93_v1c05910	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
VV93_v1c05980	COG1115	amino acid carrier protein
VV93_v1c06000	COG0513	Belongs to the DEAD box helicase family
VV93_v1c06010	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
VV93_v1c06030	COG0716	FMN binding
VV93_v1c06050	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
VV93_v1c06060	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
VV93_v1c06070	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
VV93_v1c06080	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
VV93_v1c06120	COG0667	Aldo Keto reductase
VV93_v1c06170	COG0730	response to heat
VV93_v1c06210	COG1283	sodium-dependent phosphate transmembrane transporter activity
VV93_v1c06220	COG0583	DNA-binding transcription factor activity
VV93_v1c06230	COG0640	Transcriptional regulator
VV93_v1c06250	COG0728	peptidoglycan biosynthetic process
VV93_v1c06260	COG0196	riboflavin kinase activity
VV93_v1c06270	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
VV93_v1c06290	COG1047	Peptidyl-prolyl cis-trans
VV93_v1c06320	COG3275	phosphorelay sensor kinase activity
VV93_v1c06330	COG1966	Carbon starvation protein
VV93_v1c06360	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
VV93_v1c06370	COG1472	Belongs to the glycosyl hydrolase 3 family
VV93_v1c06380	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
VV93_v1c06390	COG0287	Prephenate dehydrogenase
VV93_v1c06390	COG1605	Chorismate mutase
VV93_v1c06400	COG0739	heme binding
VV93_v1c06420	COG0488	(ABC) transporter
VV93_v1c06450	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
VV93_v1c06460	COG0077	Prephenate dehydratase
VV93_v1c06460	COG1605	Chorismate mutase
VV93_v1c06470	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
VV93_v1c06480	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
VV93_v1c06670	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
VV93_v1c06700	COG0745	RESPONSE REGULATOR receiver
VV93_v1c06710	COG5002	protein histidine kinase activity
VV93_v1c06730	COG0248	Ppx GppA phosphatase
VV93_v1c06750	COG0573	inorganic phosphate transmembrane transporter activity
VV93_v1c06760	COG0581	inorganic phosphate transmembrane transporter activity
VV93_v1c06780	COG0704	Plays a role in the regulation of phosphate uptake
VV93_v1c06850	COG0450	alkyl hydroperoxide reductase
VV93_v1c06860	COG0583	DNA-binding transcription factor activity
VV93_v1c06870	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
VV93_v1c06890	COG0517	IMP dehydrogenase activity
VV93_v1c06910	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
VV93_v1c06930	COG1862	Preprotein translocase
VV93_v1c06940	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
VV93_v1c06950	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
VV93_v1c06980	COG0483	inositol monophosphate 1-phosphatase activity
VV93_v1c06990	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
VV93_v1c07020	COG0822	iron-sulfur transferase activity
VV93_v1c07050	COG0443	Heat shock 70 kDa protein
VV93_v1c07060	COG0633	Ferredoxin
VV93_v1c07070	COG2975	iron-sulfur cluster assembly
VV93_v1c07100	COG0820	rRNA (adenine-C2-)-methyltransferase activity
VV93_v1c07140	COG2976	Protein conserved in bacteria
VV93_v1c07150	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
VV93_v1c07160	COG1160	GTP binding
VV93_v1c07180	COG2199	diguanylate cyclase activity
VV93_v1c07180	COG2203	Gaf domain
VV93_v1c07210	COG0516	GMP reductase activity
VV93_v1c07210	COG0517	IMP dehydrogenase activity
VV93_v1c07240	COG1584	GPR1 FUN34 yaaH family protein
VV93_v1c07250	COG1115	amino acid carrier protein
VV93_v1c07270	COG0583	DNA-binding transcription factor activity
VV93_v1c07310	COG0009	L-threonylcarbamoyladenylate synthase
VV93_v1c07450	COG0328	RNA-DNA hybrid ribonuclease activity
VV93_v1c07520	COG2003	Belongs to the UPF0758 family
VV93_v1c07580	COG0582	viral genome integration into host DNA
VV93_v1c07600	COG2867	negative regulation of translational initiation
VV93_v1c07620	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
VV93_v1c07630	COG0497	DNA recombination
VV93_v1c07640	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
VV93_v1c07650	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
VV93_v1c07800	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
VV93_v1c07810	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
VV93_v1c07840	COG0583	DNA-binding transcription factor activity
VV93_v1c07850	COG0590	tRNA wobble adenosine to inosine editing
VV93_v1c07920	COG2195	Cleaves the N-terminal amino acid of tripeptides
VV93_v1c07930	COG2252	PERMEase
VV93_v1c07990	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
VV93_v1c08000	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
VV93_v1c08000	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
VV93_v1c08050	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
VV93_v1c08060	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
VV93_v1c08070	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
VV93_v1c08080	COG0142	geranyltranstransferase activity
VV93_v1c08100	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
VV93_v1c08150	COG0583	DNA-binding transcription factor activity
VV93_v1c08170	COG2363	Small membrane protein
VV93_v1c08200	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
VV93_v1c08210	COG1611	Belongs to the LOG family
VV93_v1c08220	COG3706	GGDEF domain
VV93_v1c08260	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
VV93_v1c08270	COG1464	Belongs to the NlpA lipoprotein family
VV93_v1c08280	COG2011	ABC-type metal ion transport system permease component
VV93_v1c08300	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
VV93_v1c08320	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
VV93_v1c08320	COG1263	PTS System
VV93_v1c08330	COG0366	Alpha amylase catalytic
VV93_v1c08380	COG0321	lipoyl(octanoyl) transferase activity
VV93_v1c08400	COG1686	Belongs to the peptidase S11 family
VV93_v1c08410	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
VV93_v1c08420	COG0772	Belongs to the SEDS family
VV93_v1c08430	COG0768	penicillin binding
VV93_v1c08450	COG0799	negative regulation of ribosome biogenesis
VV93_v1c08460	COG1466	dna polymerase III delta subunit
VV93_v1c08470	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
VV93_v1c08490	COG2888	peptidyl-tyrosine sulfation
VV93_v1c08510	COG4535	Mg2 and Co2 transporter CorC
VV93_v1c08520	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
VV93_v1c08530	COG1702	phosphate starvation-inducible protein PhoH
VV93_v1c08550	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
VV93_v1c08610	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
VV93_v1c08630	COG2890	protein-(glutamine-N5) methyltransferase activity
VV93_v1c08640	COG3094	Invasion gene expression up-regulator, SirB
VV93_v1c08650	COG2912	Transglutaminase-like superfamily
VV93_v1c08690	COG1187	pseudouridine synthase activity
VV93_v1c08700	COG2840	Smr protein MutS2
VV93_v1c08720	COG3735	TraB family
VV93_v1c08750	COG2217	Heavy metal translocating P-type atpase
VV93_v1c08750	COG2608	mercury ion transmembrane transporter activity
VV93_v1c08860	COG0835	chemotaxis
VV93_v1c08860	COG0784	Response regulator, receiver
VV93_v1c08870	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
VV93_v1c08880	COG1815	bacterial-type flagellum-dependent cell motility
VV93_v1c08890	COG1558	bacterial-type flagellum-dependent cell motility
VV93_v1c08900	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
VV93_v1c08910	COG1749	Flagellar hook protein flgE
VV93_v1c08920	COG4787	bacterial-type flagellum-dependent cell motility
VV93_v1c08930	COG4786	Flagellar basal body rod
VV93_v1c08940	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
VV93_v1c08960	COG1705	Flagellar rod assembly protein muramidase FlgJ
VV93_v1c08960	COG3951	Flagellar rod assembly protein muramidase FlgJ
VV93_v1c08980	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c08990	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c09000	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c09010	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c09020	COG2190	(PTS) system
VV93_v1c09030	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
VV93_v1c09040	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c09050	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
VV93_v1c09060	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
VV93_v1c09120	COG0330	HflC and HflK could
VV93_v1c09130	COG3118	belongs to the thioredoxin family
VV93_v1c09140	COG0300	oxidoreductase activity
VV93_v1c09150	COG1090	epimerase
VV93_v1c09200	COG0622	Phosphoesterase
VV93_v1c09240	COG3710	Transcriptional regulator
VV93_v1c09270	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
VV93_v1c09280	COG0840	transmembrane signaling receptor activity
VV93_v1c09290	COG3104	oligopeptide transport
VV93_v1c09310	COG0367	asparagine synthase
VV93_v1c09320	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
VV93_v1c09320	COG4651	solute:proton antiporter activity
VV93_v1c09330	COG1846	Transcriptional regulator
VV93_v1c09330	COG1940	carbohydrate kinase activity
VV93_v1c09340	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
VV93_v1c09350	COG1263	PTS System
VV93_v1c09350	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
VV93_v1c09350	COG2190	(PTS) system
VV93_v1c09360	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
VV93_v1c09390	COG0716	FMN binding
VV93_v1c09410	COG0596	Alpha beta hydrolase
VV93_v1c09420	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
VV93_v1c09430	COG0033	Phosphoglucomutase
VV93_v1c09440	COG2964	Protein conserved in bacteria
VV93_v1c09450	COG0251	oxidation-reduction process
VV93_v1c09470	COG0446	pyridine nucleotide-disulphide oxidoreductase
VV93_v1c09490	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
VV93_v1c09510	COG2009	succinate dehydrogenase
VV93_v1c09520	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
VV93_v1c09530	COG1053	succinate dehydrogenase
VV93_v1c09550	COG0567	Dehydrogenase, E1 component
VV93_v1c09560	COG0508	dehydrogenase complex catalyzes the overall conversion of
VV93_v1c09590	COG1108	ABC-type Mn2 Zn2 transport systems permease components
VV93_v1c09610	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
VV93_v1c09630	COG1918	ferrous iron import across plasma membrane
VV93_v1c09640	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
VV93_v1c09680	COG3102	Protein conserved in bacteria
VV93_v1c09690	COG0788	formyltetrahydrofolate deformylase activity
VV93_v1c09710	COG1199	ATP-dependent helicase activity
VV93_v1c09720	COG1214	PFAM Peptidase M22, glycoprotease
VV93_v1c09750	COG0596	Alpha beta hydrolase
VV93_v1c09760	COG0318	PFAM AMP-dependent synthetase and ligase
VV93_v1c09770	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
VV93_v1c09790	COG2894	cell division
VV93_v1c09820	COG2951	lytic endotransglycosylase activity
VV93_v1c09840	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
VV93_v1c09860	COG0745	RESPONSE REGULATOR receiver
VV93_v1c09870	COG5002	protein histidine kinase activity
VV93_v1c09890	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c09900	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
VV93_v1c09910	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
VV93_v1c09960	COG2986	histidine ammonia-lyase
VV93_v1c09970	COG1216	Glycosyl transferase, family 2
VV93_v1c09990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
VV93_v1c10010	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
VV93_v1c10020	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
VV93_v1c10110	COG0745	RESPONSE REGULATOR receiver
VV93_v1c10160	COG3842	ATPase activity
VV93_v1c10170	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
VV93_v1c10180	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
VV93_v1c10190	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
VV93_v1c10210	COG2204	response regulator
VV93_v1c10220	COG4191	Histidine kinase
VV93_v1c10270	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
VV93_v1c10280	COG0776	regulation of translation
VV93_v1c10290	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
VV93_v1c10300	COG1555	photosystem II stabilization
VV93_v1c10340	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
VV93_v1c10350	COG0436	Aminotransferase
VV93_v1c10360	COG1169	isochorismate synthase
VV93_v1c10390	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
VV93_v1c10400	COG1441	menaquinone biosynthetic process
VV93_v1c10410	COG0318	PFAM AMP-dependent synthetase and ligase
VV93_v1c10480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
VV93_v1c10490	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
VV93_v1c10520	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
VV93_v1c10530	COG1522	sequence-specific DNA binding
VV93_v1c10550	COG1946	Acyl-CoA thioesterase
VV93_v1c10560	COG3126	Type III secretion system lipoprotein chaperone (YscW)
VV93_v1c10590	COG5001	Diguanylate cyclase
VV93_v1c10650	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
VV93_v1c10680	COG3139	Protein of unknown function (DUF1315)
VV93_v1c10690	COG0252	asparaginase activity
VV93_v1c10700	COG0616	signal peptide processing
VV93_v1c10710	COG0446	pyridine nucleotide-disulphide oxidoreductase
VV93_v1c10710	COG1902	pentaerythritol trinitrate reductase activity
VV93_v1c10720	COG0778	Nitroreductase
VV93_v1c10730	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
VV93_v1c10740	COG0123	including yeast histone deacetylase and acetoin utilization protein
VV93_v1c10800	COG3706	GGDEF domain
VV93_v1c10800	COG0745	RESPONSE REGULATOR receiver
VV93_v1c10810	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
VV93_v1c10820	COG2731	YhcH YjgK YiaL family protein
VV93_v1c10830	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
VV93_v1c10840	COG0569	domain protein
VV93_v1c10850	COG3083	sulfuric ester hydrolase activity
VV93_v1c10870	COG3081	Nucleoid-associated protein
VV93_v1c10900	COG1757	Na H antiporter
VV93_v1c10910	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
VV93_v1c10930	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
VV93_v1c10940	COG2095	MarC family integral membrane protein
VV93_v1c10950	COG1454	alcohol dehydrogenase
VV93_v1c10950	COG1012	belongs to the aldehyde dehydrogenase family
VV93_v1c10960	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c10990	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
VV93_v1c11010	COG2056	Na+-H+ antiporter family
VV93_v1c11020	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
VV93_v1c11030	COG2885	chlorophyll binding
VV93_v1c11050	COG0346	lactoylglutathione lyase activity
VV93_v1c11060	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
VV93_v1c11080	COG4659	FMN binding
VV93_v1c11100	COG4656	Part of a membrane complex involved in electron transport
VV93_v1c11160	COG0391	Required for morphogenesis under gluconeogenic growth conditions
VV93_v1c11180	COG0521	Mo-molybdopterin cofactor biosynthetic process
VV93_v1c11200	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
VV93_v1c11210	COG0314	molybdopterin synthase activity
VV93_v1c11230	COG0601	transmembrane transport
VV93_v1c11240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
VV93_v1c11250	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c11270	COG0435	Glutathione S-transferase
VV93_v1c11290	COG2350	Protein conserved in bacteria
VV93_v1c11300	COG1607	acyl-coa hydrolase
VV93_v1c11330	COG1301	dicarboxylic acid transport
VV93_v1c11360	COG0134	indole-3-glycerol-phosphate synthase activity
VV93_v1c11360	COG0135	phosphoribosylanthranilate isomerase activity
VV93_v1c11380	COG0512	Glutamine amidotransferase of anthranilate synthase
VV93_v1c11390	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
VV93_v1c11410	COG0613	PHP domain protein
VV93_v1c11420	COG0009	L-threonylcarbamoyladenylate synthase
VV93_v1c11480	COG5001	Diguanylate cyclase
VV93_v1c11490	COG0417	DNA replication proofreading
VV93_v1c11500	COG2197	response regulator
VV93_v1c11630	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
VV93_v1c11640	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
VV93_v1c11700	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
VV93_v1c11710	COG0437	4 iron, 4 sulfur cluster binding
VV93_v1c11720	COG3301	Polysulphide reductase, NrfD
VV93_v1c11730	COG1138	Cytochrome C-type biogenesis protein
VV93_v1c11740	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
VV93_v1c11750	COG3088	subunit of a heme lyase
VV93_v1c11750	COG4235	cytochrome complex assembly
VV93_v1c11770	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
VV93_v1c11770	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
VV93_v1c11780	COG0489	protein tyrosine kinase activity
VV93_v1c11810	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
VV93_v1c11820	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
VV93_v1c11830	COG0659	secondary active sulfate transmembrane transporter activity
VV93_v1c11840	COG1530	ribonuclease E activity
VV93_v1c11870	COG1399	metal-binding, possibly nucleic acid-binding protein
VV93_v1c11900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
VV93_v1c11960	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
VV93_v1c11990	COG0084	hydrolase, TatD family'
VV93_v1c12000	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
VV93_v1c12000	COG1263	PTS System
VV93_v1c12030	COG0733	neurotransmitter:sodium symporter activity
VV93_v1c12060	COG4667	esterase of the alpha-beta hydrolase superfamily
VV93_v1c12070	COG0469	pyruvate kinase activity
VV93_v1c12080	COG1940	carbohydrate kinase activity
VV93_v1c12090	COG0784	Response regulator, receiver
VV93_v1c12090	COG0835	chemotaxis
VV93_v1c12130	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c12140	COG0616	signal peptide processing
VV93_v1c12160	COG0539	negative regulation of cytoplasmic translation
VV93_v1c12180	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
VV93_v1c12190	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
VV93_v1c12200	COG0284	orotidine-5'-phosphate decarboxylase activity
VV93_v1c12210	COG4174	ABC transporter (Permease)
VV93_v1c12220	COG4239	(ABC) transporter, permease
VV93_v1c12230	COG4166	transmembrane transport
VV93_v1c12240	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c12250	COG4608	Belongs to the ABC transporter superfamily
VV93_v1c12320	COG0583	DNA-binding transcription factor activity
VV93_v1c12340	COG0686	Belongs to the AlaDH PNT family
VV93_v1c12380	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
VV93_v1c12460	COG0501	Belongs to the peptidase M48B family
VV93_v1c12480	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c12510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
VV93_v1c12550	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
VV93_v1c12570	COG0482	sulfurtransferase activity
VV93_v1c12590	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
VV93_v1c12600	COG2916	Histone family protein nucleoid-structuring protein H-NS
VV93_v1c12620	COG1757	Na H antiporter
VV93_v1c12640	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
VV93_v1c12650	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
VV93_v1c12670	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
VV93_v1c12690	COG0107	imidazoleglycerol-phosphate synthase activity
VV93_v1c12710	COG3012	SEC-C Motif Domain Protein
VV93_v1c12720	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
VV93_v1c12730	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
VV93_v1c12740	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
VV93_v1c12760	COG1435	thymidine kinase activity
VV93_v1c12780	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
VV93_v1c12790	COG0583	DNA-binding transcription factor activity
VV93_v1c12830	COG2116	formate transmembrane transporter activity
VV93_v1c12850	COG0390	transport system, permease component
VV93_v1c12860	COG4459	periplasmic nitrate reductase
VV93_v1c12870	COG3005	denitrification pathway
VV93_v1c12940	COG1227	inorganic diphosphatase activity
VV93_v1c12970	COG4172	Belongs to the ABC transporter superfamily
VV93_v1c12990	COG4171	peptide transport system, permease
VV93_v1c13000	COG4168	peptide transport system, permease
VV93_v1c13020	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
VV93_v1c13030	COG1842	Phage shock protein A
VV93_v1c13050	COG1983	PspC domain protein
VV93_v1c13090	COG2818	Glycosylase
VV93_v1c13100	COG0626	cystathionine gamma-synthase activity
VV93_v1c13120	COG0733	neurotransmitter:sodium symporter activity
VV93_v1c13140	COG0564	pseudouridine synthase activity
VV93_v1c13180	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
VV93_v1c13190	COG1151	hydroxylamine reductase activity
VV93_v1c13200	COG3604	Transcriptional regulator
VV93_v1c13210	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
VV93_v1c13220	COG4136	ATPase activity
VV93_v1c13230	COG4135	transport system, permease component
VV93_v1c13240	COG4134	Bacterial extracellular solute-binding protein
VV93_v1c13260	COG3313	Fe-S protein
VV93_v1c13320	COG2205	protein histidine kinase activity
VV93_v1c13330	COG0745	RESPONSE REGULATOR receiver
VV93_v1c13350	COG1061	Type III restriction enzyme res subunit
VV93_v1c13390	COG2814	Major facilitator Superfamily
VV93_v1c13420	COG0702	epimerase
VV93_v1c13430	COG1136	(ABC) transporter
VV93_v1c13500	COG3273	potassium ion transport
VV93_v1c13500	COG2985	domain, Protein
VV93_v1c13510	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
VV93_v1c13520	COG1979	alcohol dehydrogenase
VV93_v1c13530	COG1737	Transcriptional regulator
VV93_v1c13540	COG0076	glutamate decarboxylase activity
VV93_v1c13560	COG2431	L-lysine efflux transmembrane transporter activity
VV93_v1c13580	COG3070	regulator of competence-specific genes
VV93_v1c13610	COG5002	protein histidine kinase activity
VV93_v1c13610	COG5002	protein histidine kinase activity
VV93_v1c13630	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
VV93_v1c13640	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
VV93_v1c13650	COG4988	ABC transporter
VV93_v1c13660	COG0492	ferredoxin-NADP+ reductase activity
VV93_v1c13700	COG0745	RESPONSE REGULATOR receiver
VV93_v1c13700	COG3706	GGDEF domain
VV93_v1c13710	COG0471	metal ion transport
VV93_v1c13720	COG2949	membrane
VV93_v1c13730	COG0281	malic enzyme
VV93_v1c13740	COG1643	Atp-dependent helicase
VV93_v1c13790	COG1346	cytolysis
VV93_v1c13800	COG1380	Effector of murein hydrolase LrgA
VV93_v1c13810	COG2925	Exonuclease
VV93_v1c13890	COG2988	succinylglutamate desuccinylase activity
VV93_v1c13910	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
VV93_v1c13950	COG0583	DNA-binding transcription factor activity
VV93_v1c13970	COG1451	nucleotide metabolic process
VV93_v1c14000	COG3063	Type IV pilus biogenesis stability protein PilW
VV93_v1c14030	COG2195	Cleaves the N-terminal amino acid of tripeptides
VV93_v1c14050	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
VV93_v1c14070	COG0625	glutathione transferase activity
VV93_v1c14120	COG3706	GGDEF domain
VV93_v1c14120	COG0745	RESPONSE REGULATOR receiver
VV93_v1c14130	COG1278	Cold shock
VV93_v1c14150	COG0584	glycerophosphoryl diester phosphodiesterase
VV93_v1c14160	COG1349	DNA-binding transcription factor activity
VV93_v1c14170	COG3842	ATPase activity
VV93_v1c14180	COG0395	ABC-type sugar transport system, permease component
VV93_v1c14190	COG1175	transmembrane transport
VV93_v1c14200	COG1653	transport
VV93_v1c14230	COG0730	response to heat
VV93_v1c14250	COG2197	response regulator
VV93_v1c14330	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
VV93_v1c14350	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
VV93_v1c14360	COG0372	Belongs to the citrate synthase family
VV93_v1c14370	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
VV93_v1c14380	COG2828	Protein conserved in bacteria
VV93_v1c14450	COG0561	phosphatase activity
VV93_v1c14460	COG0602	queuosine metabolic process
VV93_v1c14470	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
VV93_v1c14480	COG3706	GGDEF domain
VV93_v1c14530	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
VV93_v1c14550	COG1254	Belongs to the acylphosphatase family
VV93_v1c14560	COG2920	part of a sulfur-relay system
VV93_v1c14580	COG0670	Belongs to the BI1 family
VV93_v1c14590	COG1126	abc transporter atp-binding protein
VV93_v1c14600	COG0765	amino acid transport
VV93_v1c14610	COG4597	amino acid ABC transporter
VV93_v1c14620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
VV93_v1c14640	COG0437	4 iron, 4 sulfur cluster binding
VV93_v1c14650	COG0348	domain, Protein
VV93_v1c14660	COG0204	Acyl-transferase
VV93_v1c14670	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
VV93_v1c14700	COG1115	amino acid carrier protein
VV93_v1c14760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
VV93_v1c14790	COG3290	protein histidine kinase activity
VV93_v1c14800	COG4565	transcriptional regulatory protein
VV93_v1c14810	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
VV93_v1c14820	COG0363	glucosamine-6-phosphate deaminase activity
VV93_v1c14830	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
VV93_v1c14910	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
VV93_v1c14930	COG0438	transferase activity, transferring glycosyl groups
VV93_v1c15020	COG2204	response regulator
VV93_v1c15080	COG1366	Belongs to the anti-sigma-factor antagonist family
VV93_v1c15090	COG1793	dna ligase
VV93_v1c15100	COG3706	GGDEF domain
VV93_v1c15120	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
VV93_v1c15150	COG2996	Protein conserved in bacteria
VV93_v1c15170	COG3008	intermembrane lipid transfer
VV93_v1c15180	COG2995	paraquat-inducible protein a
VV93_v1c15190	COG1132	(ABC) transporter
VV93_v1c15200	COG1956	GAF domain-containing protein
VV93_v1c15240	COG0308	aminopeptidase N
VV93_v1c15260	COG2902	Dehydrogenase
VV93_v1c15290	COG0116	Belongs to the methyltransferase superfamily
VV93_v1c15290	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
VV93_v1c15350	COG1067	ATP-dependent peptidase activity
VV93_v1c15360	COG3120	sequence-specific DNA binding
VV93_v1c15610	COG3278	Belongs to the heme-copper respiratory oxidase family
VV93_v1c15640	COG2010	Cytochrome c
VV93_v1c15660	COG2217	Heavy metal translocating P-type atpase
VV93_v1c15690	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
VV93_v1c15700	COG0589	response to stress
VV93_v1c15710	COG0037	tRNA processing
VV93_v1c15730	COG2992	FlgJ-related protein
VV93_v1c15760	COG1176	ABC-type spermidine putrescine transport system, permease component I
VV93_v1c15770	COG1177	transmembrane transport
VV93_v1c15780	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
VV93_v1c15790	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
VV93_v1c15800	COG3385	transposase activity
VV93_v1c15810	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
VV93_v1c15820	COG0004	ammonium transporteR
VV93_v1c15910	COG0437	4 iron, 4 sulfur cluster binding
VV93_v1c15920	COG3383	formate dehydrogenase (NAD+) activity
VV93_v1c15920	COG0243	molybdopterin cofactor binding
VV93_v1c15980	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
VV93_v1c15990	COG0840	transmembrane signaling receptor activity
VV93_v1c16000	COG0488	(ABC) transporter
VV93_v1c16030	COG3852	Histidine kinase
VV93_v1c16040	COG2204	response regulator
VV93_v1c16060	COG4662	Binding-protein-dependent transport system inner membrane component
VV93_v1c16070	COG3842	ATPase activity
VV93_v1c16090	COG0303	'Molybdopterin
VV93_v1c16140	COG0840	transmembrane signaling receptor activity
VV93_v1c16150	COG0791	NLP P60 protein
VV93_v1c16170	COG3706	GGDEF domain
VV93_v1c16210	COG0307	riboflavin synthase, alpha
VV93_v1c16220	COG0534	Mate efflux family protein
VV93_v1c16280	COG2801	Transposase and inactivated derivatives
VV93_v1c16340	COG4115	mRNA cleavage
VV93_v1c16350	COG2161	toxin-antitoxin pair type II binding
VV93_v1c16380	COG2026	Addiction module toxin, RelE StbE family
VV93_v1c16510	COG4628	conserved protein (DUF2132)
VV93_v1c16580	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
VV93_v1c16870	COG2944	sequence-specific DNA binding
VV93_v1c16880	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
VV93_v1c17070	COG4326	sporulation control protein
VV93_v1c17090	COG1228	amidohydrolase
VV93_v1c17110	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
VV93_v1c17140	COG5640	endopeptidase activity
VV93_v1c17150	COG2020	methyltransferase activity
VV93_v1c17160	COG0247	lactate metabolic process
VV93_v1c17160	COG0277	FAD linked oxidase domain protein
VV93_v1c17190	COG2885	chlorophyll binding
VV93_v1c17320	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
VV93_v1c17320	COG0072	phenylalanine-tRNA ligase activity
VV93_v1c17340	COG0745	RESPONSE REGULATOR receiver
VV93_v1c17340	COG3706	GGDEF domain
VV93_v1c17480	COG0010	Belongs to the arginase family
VV93_v1c17490	COG0840	transmembrane signaling receptor activity
VV93_v1c17520	COG2814	Major facilitator Superfamily
VV93_v1c17530	COG5380	lipid catabolic process
VV93_v1c17540	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
VV93_v1c17590	COG1643	Atp-dependent helicase
VV93_v1c17610	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
VV93_v1c17690	COG2894	cell division
VV93_v1c17710	COG4964	Belongs to the GSP D family
VV93_v1c17760	COG3335	DDE superfamily endonuclease
VV93_v1c17800	COG3713	MltA-interacting MipA family protein
VV93_v1c17840	COG3706	GGDEF domain
VV93_v1c17860	COG0443	Heat shock 70 kDa protein
VV93_v1c17870	COG0443	Heat shock 70 kDa protein
VV93_v1c17960	COG0438	transferase activity, transferring glycosyl groups
VV93_v1c17960	COG0297	glycogen (starch) synthase activity
VV93_v1c18060	COG1596	polysaccharide export
VV93_v1c18090	COG1115	amino acid carrier protein
VV93_v1c18100	COG1132	(ABC) transporter
VV93_v1c18110	COG1132	(ABC) transporter
VV93_v1c18140	COG0783	Belongs to the Dps family
VV93_v1c18170	COG0814	amino acid
VV93_v1c18180	COG1597	lipid kinase activity
VV93_v1c18200	COG4667	esterase of the alpha-beta hydrolase superfamily
VV93_v1c18210	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
VV93_v1c18240	COG0583	DNA-binding transcription factor activity
VV93_v1c18250	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
VV93_v1c18260	COG1328	CTP reductase activity
VV93_v1c18270	COG5001	Diguanylate cyclase
VV93_v1c18270	COG3300	MHYT domain
VV93_v1c18310	COG2200	EAL domain
VV93_v1c18310	COG2199	diguanylate cyclase activity
VV93_v1c18320	COG3706	GGDEF domain
VV93_v1c18340	COG4191	Histidine kinase
VV93_v1c18340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
VV93_v1c18350	COG0471	metal ion transport
VV93_v1c18380	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
VV93_v1c18390	COG3283	Transcriptional regulator of aromatic amino acids metabolism
VV93_v1c18400	COG3768	UPF0283 membrane protein
VV93_v1c18410	COG3106	COG3106 Predicted ATPase
VV93_v1c18440	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
VV93_v1c18470	COG0494	nUDIX hydrolase
VV93_v1c18480	COG0814	amino acid
VV93_v1c18490	COG1760	l-serine dehydratase
VV93_v1c18500	COG2200	EAL domain
VV93_v1c18520	COG0720	synthase
VV93_v1c18530	COG0840	transmembrane signaling receptor activity
VV93_v1c18560	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
VV93_v1c18630	COG1448	Aminotransferase
VV93_v1c18670	COG0840	transmembrane signaling receptor activity
VV93_v1c18680	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
VV93_v1c18690	COG1846	Transcriptional regulator
VV93_v1c18740	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
VV93_v1c18770	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
VV93_v1c18780	COG3108	Peptidase M15
VV93_v1c18790	COG2989	Protein conserved in bacteria
VV93_v1c18860	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
VV93_v1c18880	COG0653	protein targeting
VV93_v1c18920	COG0366	Alpha amylase catalytic
VV93_v1c18940	COG4120	Belongs to the binding-protein-dependent transport system permease family
VV93_v1c18960	COG3092	negative regulation of chromosome organization
VV93_v1c18980	COG0280	phosphate acetyltransferase
VV93_v1c18980	COG0857	belongs to the CobB CobQ family
VV93_v1c19000	COG0583	DNA-binding transcription factor activity
VV93_v1c19050	COG1032	radical SAM domain protein
VV93_v1c19090	COG2207	Transcriptional regulator
VV93_v1c19140	COG0861	Integral membrane protein TerC family
VV93_v1c19150	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
VV93_v1c19160	COG1454	alcohol dehydrogenase
VV93_v1c19170	COG0235	Class ii aldolase
VV93_v1c19180	COG4154	Belongs to the RbsD FucU family
VV93_v1c19190	COG1070	Carbohydrate kinase
VV93_v1c19200	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
VV93_v1c19210	COG0738	Major facilitator superfamily
VV93_v1c19220	COG1349	DNA-binding transcription factor activity
VV93_v1c19240	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
VV93_v1c19270	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
VV93_v1c19410	COG2205	protein histidine kinase activity
VV93_v1c19490	COG2199	diguanylate cyclase activity
VV93_v1c19510	COG2610	gluconate transmembrane transporter activity
VV93_v1c19520	COG3622	Belongs to the hyi family
VV93_v1c19530	COG0235	Class ii aldolase
VV93_v1c19540	COG3395	kinase activity
VV93_v1c19550	COG2084	Dehydrogenase
VV93_v1c19560	COG1349	DNA-binding transcription factor activity
VV93_v1c19590	COG2003	Belongs to the UPF0758 family
VV93_v1c19620	COG0328	RNA-DNA hybrid ribonuclease activity
VV93_v1c19700	COG0582	viral genome integration into host DNA
VV93_v1c19760	COG0784	Response regulator, receiver
VV93_v1c19760	COG2205	protein histidine kinase activity
VV93_v1c19780	COG0754	glutathionylspermidine amidase activity
VV93_v1c19800	COG3766	membrane
VV93_v1c19820	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
VV93_v1c19830	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
VV93_v1c19840	COG2885	chlorophyll binding
VV93_v1c19850	COG0823	Involved in the tonB-independent uptake of proteins
VV93_v1c19880	COG0811	peptide transport
VV93_v1c19890	COG0824	Thioesterase
VV93_v1c19910	COG4890	Cyd operon protein YbgT
VV93_v1c19920	COG1294	oxidase, subunit
VV93_v1c19930	COG1271	oxidase subunit
VV93_v1c19940	COG2255	four-way junction helicase activity
VV93_v1c19960	COG0840	transmembrane signaling receptor activity
VV93_v1c19970	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
VV93_v1c19980	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
VV93_v1c20000	COG4106	trans-aconitate 2-methyltransferase activity
VV93_v1c20020	COG4067	protein conserved in archaea
VV93_v1c20020	COG0189	ligase activity
VV93_v1c20130	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
VV93_v1c20140	COG1434	Gram-negative-bacterium-type cell wall biogenesis
VV93_v1c20150	COG0745	RESPONSE REGULATOR receiver
VV93_v1c20160	COG3381	protein complex oligomerization
VV93_v1c20180	COG3070	regulator of competence-specific genes
VV93_v1c20220	COG0297	glycogen (starch) synthase activity
VV93_v1c20230	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
VV93_v1c20240	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
VV93_v1c20270	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
VV93_v1c20300	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
VV93_v1c20310	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
VV93_v1c20320	COG0542	response to heat
VV93_v1c20340	COG1278	Cold shock
VV93_v1c20380	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
VV93_v1c20390	COG1199	ATP-dependent helicase activity
VV93_v1c20410	COG3923	Primosomal replication protein n
VV93_v1c20430	COG0840	transmembrane signaling receptor activity
VV93_v1c20440	COG0708	Exodeoxyribonuclease III
VV93_v1c20470	COG4215	(ABC) transporter
VV93_v1c20520	COG1882	Formate acetyltransferase
VV93_v1c20550	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
VV93_v1c20580	COG3713	MltA-interacting MipA family protein
VV93_v1c20590	COG2766	serine protein kinase
VV93_v1c20600	COG2718	Belongs to the UPF0229 family
VV93_v1c20610	COG2719	SpoVR family
VV93_v1c20620	COG2199	diguanylate cyclase activity
VV93_v1c20630	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
VV93_v1c20650	COG1663	tetraacyldisaccharide 4'-kinase activity
VV93_v1c20670	COG2333	competence protein COMEC
VV93_v1c20670	COG0658	competence protein
VV93_v1c20690	COG4591	ABC-type transport system involved in lipoprotein release permease component
VV93_v1c20710	COG4591	ABC-type transport system involved in lipoprotein release permease component
VV93_v1c20730	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
VV93_v1c20760	COG1252	NADH dehydrogenase
VV93_v1c20820	COG0537	adenosine 5'-monophosphoramidase activity
VV93_v1c20870	COG4109	DRTGG domain
VV93_v1c20880	COG3706	GGDEF domain
VV93_v1c20890	COG1982	Orn Lys Arg decarboxylase major
VV93_v1c20900	COG0531	amino acid
VV93_v1c20920	COG3710	Transcriptional regulator
VV93_v1c20960	COG2199	diguanylate cyclase activity
VV93_v1c20960	COG2203	Gaf domain
VV93_v1c20970	COG2239	Acts as a magnesium transporter
VV93_v1c20990	COG2226	methyltransferase
VV93_v1c21020	COG1785	Belongs to the alkaline phosphatase family
VV93_v1c21040	COG0346	lactoylglutathione lyase activity
VV93_v1c21060	COG2983	Belongs to the UPF0260 family
VV93_v1c21090	COG0745	RESPONSE REGULATOR receiver
VV93_v1c21100	COG2205	protein histidine kinase activity
VV93_v1c21170	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
VV93_v1c21210	COG0745	RESPONSE REGULATOR receiver
VV93_v1c21220	COG0583	DNA-binding transcription factor activity
VV93_v1c21230	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
VV93_v1c21240	COG1286	toxin biosynthetic process
VV93_v1c21250	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
VV93_v1c21260	COG0285	dihydrofolate synthase activity
VV93_v1c21300	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
VV93_v1c21320	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
VV93_v1c21330	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
VV93_v1c21330	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
VV93_v1c21350	COG3101	peptidyl-lysine hydroxylation
VV93_v1c21360	COG2860	membrane
VV93_v1c21370	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
VV93_v1c21380	COG2890	protein-(glutamine-N5) methyltransferase activity
VV93_v1c21390	COG2840	Smr protein MutS2
VV93_v1c21400	COG2062	phosphohistidine phosphatase, SixA
VV93_v1c21410	COG1025	Belongs to the peptidase M16 family
VV93_v1c21430	COG1024	Enoyl-CoA hydratase
VV93_v1c21430	COG1250	3-hydroxyacyl-CoA dehydrogenase
VV93_v1c21440	COG0183	Belongs to the thiolase family
VV93_v1c21470	COG2067	long-chain fatty acid transport protein
VV93_v1c21490	COG2853	Lipoprotein
VV93_v1c21510	COG3088	subunit of a heme lyase
VV93_v1c21510	COG4235	cytochrome complex assembly
VV93_v1c21520	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
VV93_v1c21530	COG1138	Cytochrome C-type biogenesis protein
VV93_v1c21550	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
VV93_v1c21560	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
VV93_v1c21570	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
VV93_v1c21580	COG4133	protoheme IX ABC transporter activity
VV93_v1c21600	COG0835	chemotaxis
VV93_v1c21620	COG1192	Involved in chromosome partitioning
VV93_v1c21630	COG2201	protein-glutamate methylesterase activity
VV93_v1c21640	COG2198	Histidine kinase
VV93_v1c21640	COG0643	Histidine kinase
VV93_v1c21650	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
VV93_v1c21680	COG0455	bacterial-type flagellum organization
VV93_v1c21720	COG1684	flagellar biosynthetic protein fliR
VV93_v1c21730	COG1987	bacterial-type flagellum assembly
VV93_v1c21830	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
VV93_v1c21850	COG1677	Flagellar hook-basal body complex protein FliE
VV93_v1c21860	COG2204	response regulator
VV93_v1c21870	COG4191	Histidine kinase
VV93_v1c21880	COG2204	response regulator
VV93_v1c21890	COG1516	flagellar protein fliS
VV93_v1c21910	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
VV93_v1c21920	COG1334	flagellar protein FlaG
VV93_v1c21930	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c21940	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c21950	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
VV93_v1c21960	COG2837	iron assimilation
VV93_v1c22010	COG1393	Belongs to the ArsC family
VV93_v1c22060	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
VV93_v1c22070	COG2716	regulation of RNA biosynthetic process
VV93_v1c22080	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
VV93_v1c22130	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
VV93_v1c22160	COG0455	bacterial-type flagellum organization
VV93_v1c22190	COG3550	peptidyl-serine autophosphorylation
VV93_v1c22300	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
VV93_v1c22330	COG4783	chaperone-mediated protein folding
VV93_v1c22340	COG1393	Belongs to the ArsC family
VV93_v1c22380	COG2233	PERMEase
VV93_v1c22390	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
VV93_v1c22410	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
VV93_v1c22420	COG0121	glutamine amidotransferase
VV93_v1c22440	COG1960	acyl-CoA dehydrogenase activity
VV93_v1c22480	COG2249	NAD(P)H dehydrogenase (quinone) activity
VV93_v1c22500	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
VV93_v1c22520	COG2226	methyltransferase
VV93_v1c22530	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
VV93_v1c22540	COG1388	LysM domain
VV93_v1c22540	COG0741	lytic transglycosylase activity
VV93_v1c22570	COG0347	Belongs to the P(II) protein family
VV93_v1c22610	COG0587	DNA-directed DNA polymerase activity
VV93_v1c22660	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
VV93_v1c22670	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
VV93_v1c22680	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
VV93_v1c22690	COG0750	zinc metalloprotease
VV93_v1c22700	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
VV93_v1c22710	COG0575	Belongs to the CDS family
VV93_v1c22730	COG0233	cytoplasmic translational termination
VV93_v1c22770	COG0024	Methionine aminopeptidase
VV93_v1c22780	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
VV93_v1c22810	COG3098	single-species biofilm formation
VV93_v1c22860	COG1671	Belongs to the UPF0178 family
VV93_v1c22870	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
VV93_v1c22880	COG0254	rRNA binding
VV93_v1c22890	COG1720	tRNA m6t6A37 methyltransferase activity
VV93_v1c22940	COG0733	neurotransmitter:sodium symporter activity
VV93_v1c22980	COG0514	ATP-dependent DNA helicase (RecQ)
VV93_v1c23000	COG0745	RESPONSE REGULATOR receiver
VV93_v1c23000	COG3706	GGDEF domain
VV93_v1c23020	COG1477	protein flavinylation
VV93_v1c23090	COG0271	Belongs to the BolA IbaG family
VV93_v1c23130	COG2211	Major facilitator Superfamily
VV93_v1c23150	COG1595	DNA-templated transcription, initiation
VV93_v1c23170	COG3248	Nucleoside-binding outer membrane protein
VV93_v1c23180	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
VV93_v1c23190	COG0693	protein deglycase activity
VV93_v1c23200	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
VV93_v1c23220	COG2166	iron-sulfur cluster assembly
VV93_v1c23230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
VV93_v1c23240	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
VV93_v1c23280	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
VV93_v1c23290	COG1074	ATP-dependent DNA helicase activity
VV93_v1c23300	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
VV93_v1c23310	COG3083	sulfuric ester hydrolase activity
VV93_v1c23340	COG3141	response to X-ray
VV93_v1c23360	COG2171	N-acyltransferase activity
VV93_v1c23370	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
VV93_v1c23410	COG1349	DNA-binding transcription factor activity
VV93_v1c23420	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
VV93_v1c23440	COG0456	acetyltransferase
VV93_v1c23450	COG0569	domain protein
VV93_v1c23450	COG0189	ligase activity
VV93_v1c23480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
VV93_v1c23500	COG0840	transmembrane signaling receptor activity
VV93_v1c23510	COG2211	Major facilitator Superfamily
VV93_v1c23540	COG2017	converts alpha-aldose to the beta-anomer
VV93_v1c23570	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
VV93_v1c23580	COG1609	Transcriptional regulator
VV93_v1c23600	COG3250	beta-galactosidase activity
VV93_v1c23610	COG2731	YhcH YjgK YiaL family protein
VV93_v1c23620	COG0531	amino acid
VV93_v1c23630	COG0531	amino acid
VV93_v1c23640	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
VV93_v1c23640	COG3408	Glycogen debranching enzyme
VV93_v1c23660	COG0583	DNA-binding transcription factor activity
VV93_v1c23670	COG2059	Chromate
VV93_v1c23770	COG4964	Belongs to the GSP D family
VV93_v1c23840	COG1022	Amp-dependent synthetase and ligase
VV93_v1c23860	COG0583	DNA-binding transcription factor activity
VV93_v1c23890	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
VV93_v1c23930	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
VV93_v1c23950	COG0560	Phosphoserine phosphatase
VV93_v1c24000	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
VV93_v1c24010	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
VV93_v1c24020	COG0084	hydrolase, TatD family'
VV93_v1c24050	COG3706	GGDEF domain
VV93_v1c24070	COG0456	acetyltransferase
VV93_v1c24090	COG3153	acetyltransferase
VV93_v1c24140	COG0534	Mate efflux family protein
VV93_v1c24160	COG4785	May be involved in cell division
VV93_v1c24260	COG0195	Participates in both transcription termination and antitermination
VV93_v1c24280	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
VV93_v1c24290	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
VV93_v1c24300	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
VV93_v1c24310	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
VV93_v1c24330	COG1534	Rna-binding protein
VV93_v1c24360	COG2027	D-alanyl-D-alanine carboxypeptidase
VV93_v1c24370	COG2832	Protein of unknown function (DUF454)
VV93_v1c24390	COG0739	heme binding
VV93_v1c24440	COG0628	permease
VV93_v1c24450	COG2813	Specifically methylates the guanine in position
VV93_v1c24460	COG2205	protein histidine kinase activity
VV93_v1c24460	COG0784	Response regulator, receiver
VV93_v1c24480	COG0601	transmembrane transport
VV93_v1c24490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
VV93_v1c24500	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c24510	COG4608	Belongs to the ABC transporter superfamily
VV93_v1c24530	COG2971	BadF BadG BcrA BcrD
VV93_v1c24560	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
VV93_v1c24590	COG1840	ABC-type Fe3 transport system, periplasmic component
VV93_v1c24600	COG0004	ammonium transporteR
VV93_v1c24610	COG0347	Belongs to the P(II) protein family
VV93_v1c24630	COG3835	regulator
VV93_v1c24640	COG2610	gluconate transmembrane transporter activity
VV93_v1c24650	COG1929	Belongs to the glycerate kinase type-1 family
VV93_v1c24660	COG1049	propionate catabolic process, 2-methylcitrate cycle
VV93_v1c24670	COG1752	Esterase of the alpha-beta hydrolase superfamily
VV93_v1c24680	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
VV93_v1c24690	COG1643	Atp-dependent helicase
VV93_v1c24700	COG1489	DNA binding
VV93_v1c24710	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
VV93_v1c24740	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
VV93_v1c24770	COG0842	Transport permease protein
VV93_v1c24780	COG1131	(ABC) transporter
VV93_v1c24790	COG0659	secondary active sulfate transmembrane transporter activity
VV93_v1c24800	COG0288	reversible hydration of carbon dioxide
VV93_v1c24830	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
VV93_v1c24840	COG0508	dehydrogenase complex catalyzes the overall conversion of
VV93_v1c24850	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
VV93_v1c24860	COG2186	Transcriptional regulator
VV93_v1c24870	COG3023	N-Acetylmuramoyl-L-alanine amidase
VV93_v1c24900	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
VV93_v1c24910	COG1459	type II secretion system
VV93_v1c25000	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
VV93_v1c25010	COG4137	Cytochrome C assembly protein
VV93_v1c25020	COG4536	flavin adenine dinucleotide binding
VV93_v1c25050	COG2918	glutathione biosynthetic process
VV93_v1c25060	COG0612	Peptidase, M16
VV93_v1c25070	COG1238	metal cluster binding
VV93_v1c25090	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
VV93_v1c25100	COG0511	ligase activity, forming carbon-carbon bonds
VV93_v1c25100	COG5016	pyruvate
VV93_v1c25130	COG0527	aspartate kinase activity
VV93_v1c25180	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
VV93_v1c25190	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
VV93_v1c25200	COG4942	peptidase
VV93_v1c25200	COG1388	LysM domain
VV93_v1c25230	COG0585	pseudouridine synthase activity
VV93_v1c25240	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
VV93_v1c25290	COG3956	TIGRFAM MazG family protein
VV93_v1c25300	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
VV93_v1c25310	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
VV93_v1c25320	COG4999	Histidine kinase
VV93_v1c25320	COG3437	response regulator, receiver
VV93_v1c25320	COG3850	Histidine kinase
VV93_v1c25320	COG2205	protein histidine kinase activity
VV93_v1c25380	COG1381	Involved in DNA repair and RecF pathway recombination
VV93_v1c25410	COG0681	Belongs to the peptidase S26 family
VV93_v1c25430	COG3086	response to oxidative stress
VV93_v1c25460	COG1595	DNA-templated transcription, initiation
VV93_v1c25470	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
VV93_v1c25530	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
VV93_v1c25540	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
VV93_v1c25550	COG3079	Belongs to the UPF0149 family
VV93_v1c25560	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
VV93_v1c25570	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
VV93_v1c25590	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
VV93_v1c25620	COG1279	arginine transmembrane transporter activity
VV93_v1c25630	COG0668	transmembrane transport
VV93_v1c25640	COG0191	fructose-bisphosphate aldolase activity
VV93_v1c25720	COG2356	endonuclease I
VV93_v1c25740	COG1385	rRNA (uridine-N3-)-methyltransferase activity
VV93_v1c25800	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
VV93_v1c25810	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
VV93_v1c25820	COG0762	integral membrane protein
VV93_v1c25830	COG1872	DUF167
VV93_v1c25860	COG0635	Involved in the biosynthesis of porphyrin-containing compound
VV93_v1c25920	COG0741	lytic transglycosylase activity
VV93_v1c26000	COG3437	response regulator, receiver
VV93_v1c26020	COG1609	Transcriptional regulator
VV93_v1c26040	COG1486	melibiose metabolic process
VV93_v1c26050	COG1447	Phosphotransferase system cellobiose-specific component IIA
VV93_v1c26070	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
VV93_v1c26080	COG0726	polysaccharide deacetylase
VV93_v1c26290	COG0795	lipopolysaccharide-transporting ATPase activity
VV93_v1c26300	COG0795	lipopolysaccharide-transporting ATPase activity
VV93_v1c26320	COG3385	transposase activity
VV93_v1c26330	COG2927	DNA polymerase III (CHI subunit)
VV93_v1c26360	COG4269	membrane
VV93_v1c26380	COG0456	acetyltransferase
VV93_v1c26410	COG2235	arginine
VV93_v1c26440	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
VV93_v1c26450	COG0251	oxidation-reduction process
VV93_v1c26460	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
VV93_v1c26490	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
VV93_v1c26500	COG0312	modulator of DNA gyrase
VV93_v1c26510	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
VV93_v1c26520	COG3164	Protein of unknown function
VV93_v1c26530	COG1530	ribonuclease E activity
VV93_v1c26550	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
VV93_v1c26560	COG1792	Involved in formation and maintenance of cell shape
VV93_v1c26570	COG1077	Cell shape determining protein MreB Mrl
VV93_v1c26660	COG1459	type II secretion system
VV93_v1c26670	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
VV93_v1c26690	COG3267	Type II secretory pathway component ExeA
VV93_v1c26690	COG3409	Peptidoglycan-binding domain 1 protein
VV93_v1c26740	COG2200	EAL domain
VV93_v1c26740	COG2199	diguanylate cyclase activity
VV93_v1c26780	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
VV93_v1c26800	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
VV93_v1c26810	COG0527	aspartate kinase activity
VV93_v1c26820	COG1410	methionine synthase
VV93_v1c26820	COG0646	methionine synthase
VV93_v1c26840	COG3706	GGDEF domain
VV93_v1c26840	COG0745	RESPONSE REGULATOR receiver
VV93_v1c26960	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
VV93_v1c27020	COG0735	belongs to the Fur family
VV93_v1c27050	COG0432	Pfam Uncharacterised protein family UPF0047
VV93_v1c27070	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
VV93_v1c27080	COG0305	Participates in initiation and elongation during chromosome replication
VV93_v1c27140	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
VV93_v1c27150	COG0338	D12 class N6 adenine-specific DNA methyltransferase
VV93_v1c27240	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
VV93_v1c27310	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
VV93_v1c27320	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
VV93_v1c27340	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
VV93_v1c27350	COG0527	aspartate kinase activity
VV93_v1c27350	COG0460	homoserine dehydrogenase
VV93_v1c27360	COG0626	cystathionine gamma-synthase activity
VV93_v1c27380	COG0281	malic enzyme
VV93_v1c27390	COG0254	rRNA binding
VV93_v1c27400	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
VV93_v1c27410	COG1609	Transcriptional regulator
VV93_v1c27450	COG1575	Belongs to the MenA family. Type 1 subfamily
VV93_v1c27480	COG1494	fructose-1,6-bisphosphatase
VV93_v1c27540	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
VV93_v1c27560	COG2906	2 iron, 2 sulfur cluster binding
VV93_v1c27580	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
VV93_v1c27640	COG2964	Protein conserved in bacteria
VV93_v1c27650	COG0545	Peptidyl-prolyl cis-trans isomerase
VV93_v1c27690	COG1047	Peptidyl-prolyl cis-trans
VV93_v1c27720	COG2249	NAD(P)H dehydrogenase (quinone) activity
VV93_v1c27730	COG0488	(ABC) transporter
VV93_v1c27750	COG0429	hydrolase of the alpha beta-hydrolase fold
VV93_v1c27770	COG3954	Phosphoribulokinase
VV93_v1c27780	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
VV93_v1c27800	COG1012	belongs to the aldehyde dehydrogenase family
VV93_v1c27820	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
VV93_v1c27890	COG0557	exoribonuclease II activity
VV93_v1c27900	COG0402	S-adenosylhomocysteine deaminase activity
VV93_v1c27930	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
VV93_v1c27940	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
VV93_v1c27950	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
VV93_v1c27960	COG0330	HflC and HflK could
VV93_v1c27970	COG0330	HflC and HflK could
VV93_v1c27980	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
VV93_v1c28020	COG0860	N-Acetylmuramoyl-L-alanine amidase
VV93_v1c28030	COG0802	atpase or kinase
VV93_v1c28040	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
VV93_v1c28080	COG0471	metal ion transport
VV93_v1c28100	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
VV93_v1c28110	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
VV93_v1c28140	COG1045	serine acetyltransferase
VV93_v1c28150	COG4942	peptidase
VV93_v1c28200	COG1053	succinate dehydrogenase
VV93_v1c28210	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
VV93_v1c28230	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
VV93_v1c28260	COG1509	lysine 2,3-aminomutase activity
VV93_v1c28270	COG1285	pathogenesis
VV93_v1c28310	COG0534	Mate efflux family protein
VV93_v1c28340	COG3678	ATP-independent chaperone mediated protein folding
VV93_v1c28350	COG0745	RESPONSE REGULATOR receiver
VV93_v1c28360	COG2205	protein histidine kinase activity
VV93_v1c28380	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
VV93_v1c28400	COG1027	Aspartate ammonia-lyase
VV93_v1c28410	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
VV93_v1c28420	COG4232	protein-disulfide reductase activity
VV93_v1c28440	COG2095	MarC family integral membrane protein
VV93_v1c28460	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
VV93_v1c28470	COG2198	Histidine kinase
VV93_v1c28470	COG2205	protein histidine kinase activity
VV93_v1c28470	COG0784	Response regulator, receiver
VV93_v1c28480	COG2814	Major facilitator Superfamily
VV93_v1c28510	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
VV93_v1c28530	COG0511	ligase activity, forming carbon-carbon bonds
VV93_v1c28540	COG0439	Biotin carboxylase
VV93_v1c28570	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
VV93_v1c28580	COG0840	transmembrane signaling receptor activity
VV93_v1c28590	COG0789	Transcriptional regulator
VV93_v1c28610	COG0151	Belongs to the GarS family
VV93_v1c28660	COG1253	flavin adenine dinucleotide binding
VV93_v1c28670	COG3068	Protein conserved in bacteria
VV93_v1c28680	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
VV93_v1c28690	COG1573	uracil-dna glycosylase
VV93_v1c28740	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
VV93_v1c28800	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
VV93_v1c28820	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
VV93_v1c28860	COG0812	UDP-N-acetylmuramate dehydrogenase activity
VV93_v1c28880	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
VV93_v1c29020	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
VV93_v1c29030	COG3118	belongs to the thioredoxin family
VV93_v1c29060	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
VV93_v1c29080	COG0514	ATP-dependent DNA helicase (RecQ)
VV93_v1c29100	COG2962	Rard protein
VV93_v1c29120	COG1280	lysine exporter protein (LysE YggA)
VV93_v1c29130	COG0210	DNA helicase
VV93_v1c29150	COG3220	belongs to the UPF0276 family
VV93_v1c29200	COG0006	proline dipeptidase activity
VV93_v1c29200	COG0006	proline dipeptidase activity
VV93_v1c29240	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
VV93_v1c29280	COG2132	Multicopper oxidase
VV93_v1c29300	COG3335	DDE superfamily endonuclease
VV93_v1c29360	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
VV93_v1c29380	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
VV93_v1c29390	COG0408	coproporphyrinogen oxidase activity
VV93_v1c29430	COG0551	DNA topoisomerase type I activity
VV93_v1c29450	COG0758	DNA mediated transformation
VV93_v1c29480	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
VV93_v1c29490	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
VV93_v1c29490	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
VV93_v1c29500	COG0569	domain protein
VV93_v1c29510	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
VV93_v1c29520	COG1272	protein, Hemolysin III
VV93_v1c29530	COG4326	sporulation control protein
VV93_v1c29550	COG3084	Protein conserved in bacteria
VV93_v1c29570	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
VV93_v1c29580	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
VV93_v1c29590	COG0204	Acyl-transferase
VV93_v1c29610	COG0606	chelatase, subunit chli
VV93_v1c29630	COG3978	acetolactate synthase activity
VV93_v1c29640	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
VV93_v1c29650	COG0129	dihydroxy-acid dehydratase activity
VV93_v1c29670	COG0583	DNA-binding transcription factor activity
VV93_v1c29680	COG2814	Major facilitator Superfamily
VV93_v1c29700	COG0765	amino acid transport
VV93_v1c29710	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
VV93_v1c29800	COG3312	ion transport
VV93_v1c29810	COG1475	DNA binding
VV93_v1c29820	COG1192	Involved in chromosome partitioning
VV93_v1c29840	COG0445	tRNA wobble uridine modification
VV93_v1c29860	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
VV93_v1c30040	COG4974	Belongs to the 'phage' integrase family
VV93_v1c30060	COG0706	membrane insertase activity
VV93_v1c30090	COG1126	abc transporter atp-binding protein
VV93_v1c30140	COG4608	Belongs to the ABC transporter superfamily
VV93_v1c30150	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c30170	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
VV93_v1c30170	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
VV93_v1c30210	COG0217	transcriptional regulatory protein
VV93_v1c30230	COG0583	DNA-binding transcription factor activity
VV93_v1c30250	COG1136	(ABC) transporter
VV93_v1c30260	COG4591	ABC-type transport system involved in lipoprotein release permease component
VV93_v1c30290	COG3275	phosphorelay sensor kinase activity
VV93_v1c30330	COG0786	glutamate:sodium symporter activity
VV93_v1c30340	COG0786	glutamate:sodium symporter activity
VV93_v1c30390	COG0189	ligase activity
VV93_v1c30430	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
VV93_v1c30440	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
VV93_v1c30450	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
VV93_v1c30510	COG1309	transcriptional regulator
VV93_v1c30560	COG1741	Belongs to the pirin family
VV93_v1c30580	COG5001	Diguanylate cyclase
VV93_v1c30590	COG3706	GGDEF domain
VV93_v1c30650	COG1523	belongs to the glycosyl hydrolase 13 family
VV93_v1c30700	COG1982	Orn Lys Arg decarboxylase major
VV93_v1c30710	COG0531	amino acid
VV93_v1c30720	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
VV93_v1c30780	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
VV93_v1c30790	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
VV93_v1c30800	COG1162	GTPase activity
VV93_v1c30810	COG2847	Copper chaperone PCu(A)C
VV93_v1c30820	COG1999	signal sequence binding
VV93_v1c30890	COG0058	SHG alpha-glucan phosphorylase activity
VV93_v1c30900	COG1640	4-alpha-glucanotransferase
VV93_v1c30910	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
VV93_v1c30920	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
VV93_v1c31020	COG0560	Phosphoserine phosphatase
VV93_v1c31070	COG1012	belongs to the aldehyde dehydrogenase family
VV93_v1c31080	COG0625	glutathione transferase activity
VV93_v1c31090	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
VV93_v1c31100	COG1283	sodium-dependent phosphate transmembrane transporter activity
VV93_v1c31110	COG0612	Peptidase, M16
VV93_v1c31130	COG0583	DNA-binding transcription factor activity
VV93_v1c31150	COG0642	Histidine kinase
VV93_v1c31160	COG0745	RESPONSE REGULATOR receiver
VV93_v1c31180	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c31210	COG2199	diguanylate cyclase activity
VV93_v1c31250	COG1609	Transcriptional regulator
VV93_v1c31280	COG0395	ABC-type sugar transport system, permease component
VV93_v1c31310	COG1609	Transcriptional regulator
VV93_v1c31330	COG0747	negative chemotaxis
VV93_v1c31350	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
VV93_v1c31360	COG0444	Belongs to the ABC transporter superfamily
VV93_v1c31370	COG4608	Belongs to the ABC transporter superfamily
VV93_v1c31390	COG1609	Transcriptional regulator
VV93_v1c31420	COG4580	involved in the transport of maltose and maltodextrins
VV93_v1c31440	COG1472	Belongs to the glycosyl hydrolase 3 family
VV93_v1c31450	COG0534	Mate efflux family protein
VV93_v1c31470	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c31520	COG0564	pseudouridine synthase activity
VV93_v1c31530	COG3706	GGDEF domain
VV93_v1c31570	COG1609	Transcriptional regulator
VV93_v1c31590	COG1129	ABC transporter
VV93_v1c31640	COG2211	Major facilitator Superfamily
VV93_v1c31660	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
VV93_v1c31670	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
VV93_v1c31680	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
VV93_v1c31730	COG1482	cell wall glycoprotein biosynthetic process
VV93_v1c31740	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c31740	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c31740	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c31750	COG2207	Transcriptional regulator
VV93_v1c31770	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c31780	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c31790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
VV93_v1c31810	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c31850	COG3383	formate dehydrogenase (NAD+) activity
VV93_v1c31880	COG0583	DNA-binding transcription factor activity
VV93_v1c31890	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
VV93_v1c31970	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
VV93_v1c32010	COG0583	DNA-binding transcription factor activity
VV93_v1c32020	COG1733	regulation of RNA biosynthetic process
VV93_v1c32060	COG0137	argininosuccinate synthase activity
VV93_v1c32080	COG1301	dicarboxylic acid transport
VV93_v1c32190	COG2175	clavaminate synthase activity
VV93_v1c32250	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
VV93_v1c32270	COG3706	GGDEF domain
VV93_v1c32300	COG2356	endonuclease I
VV93_v1c32330	COG1368	sulfuric ester hydrolase activity
VV93_v1c32340	COG2194	sulfuric ester hydrolase activity
VV93_v1c32350	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
VV93_v1c32360	COG2205	protein histidine kinase activity
VV93_v1c32370	COG0745	RESPONSE REGULATOR receiver
VV93_v1c32400	COG4221	oxidoreductase activity
VV93_v1c32450	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
VV93_v1c32500	COG0561	phosphatase activity
VV93_v1c32530	COG0671	phosphoesterase, PA-phosphatase related
VV93_v1c32540	COG0351	phosphomethylpyrimidine kinase
VV93_v1c32630	COG3385	transposase activity
VV93_v1c32680	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
VV93_v1c32690	COG4771	TonB-dependent receptor
VV93_v1c32730	COG0393	Putative heavy-metal-binding
VV93_v1c32760	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
VV93_v1c32780	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
VV93_v1c32820	COG0753	catalase activity
VV93_v1c32850	COG0346	lactoylglutathione lyase activity
VV93_v1c32870	COG2211	Major facilitator Superfamily
VV93_v1c32900	COG3240	lipase activity
VV93_v1c33000	COG3040	lipid binding
VV93_v1c33070	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
VV93_v1c33090	COG2197	response regulator
VV93_v1c33130	COG0784	Response regulator, receiver
VV93_v1c33130	COG2205	protein histidine kinase activity
VV93_v1c33140	COG3111	PFAM Bacterial OB fold (BOF) protein
VV93_v1c33160	COG2274	protein secretion by the type I secretion system
VV93_v1c33180	COG1538	Outer membrane efflux protein
VV93_v1c33220	COG0668	transmembrane transport
VV93_v1c33290	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
VV93_v1c33300	COG0793	Belongs to the peptidase S41A family
VV93_v1c33300	COG4946	Tricorn protease homolog
VV93_v1c33330	COG1122	ATPase activity
VV93_v1c33340	COG4720	Psort location CytoplasmicMembrane, score
VV93_v1c33350	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c33370	COG3706	GGDEF domain
VV93_v1c33410	COG3272	Protein of unknown function (DUF1722)
VV93_v1c33420	COG0789	Transcriptional regulator
VV93_v1c33430	COG0415	Belongs to the DNA photolyase family
VV93_v1c33440	COG1376	ErfK ybiS ycfS ynhG family protein
VV93_v1c33440	COG1388	LysM domain
VV93_v1c33460	COG0513	Belongs to the DEAD box helicase family
VV93_v1c33560	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
VV93_v1c33570	COG0573	inorganic phosphate transmembrane transporter activity
VV93_v1c33580	COG0581	inorganic phosphate transmembrane transporter activity
VV93_v1c33600	COG2203	Gaf domain
VV93_v1c33600	COG3706	GGDEF domain
VV93_v1c33600	COG5001	Diguanylate cyclase
VV93_v1c33600	COG4251	negative regulation of phosphorylation
VV93_v1c33620	COG2304	oxidoreductase activity
VV93_v1c33660	COG0714	Associated with various cellular activities
VV93_v1c33790	COG3206	protein involved in exopolysaccharide biosynthesis
VV93_v1c33790	COG0489	protein tyrosine kinase activity
VV93_v1c33800	COG1596	polysaccharide export
VV93_v1c33820	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
VV93_v1c33920	COG2354	Protein conserved in bacteria
VV93_v1c33940	COG0418	dihydroorotase activity
VV93_v1c33950	COG3217	Mosc domain protein beta barrel domain protein
VV93_v1c33950	COG0633	Ferredoxin
VV93_v1c33950	COG0633	Ferredoxin
VV93_v1c33950	COG3217	Mosc domain protein beta barrel domain protein
VV93_v1c33960	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
VV93_v1c34060	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
VV93_v1c34080	COG0848	biopolymer transport protein
VV93_v1c34090	COG0811	peptide transport
VV93_v1c34100	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
VV93_v1c34120	COG3721	Heme iron utilization protein
VV93_v1c34130	COG0748	coenzyme F420 binding
VV93_v1c34150	COG0784	Response regulator, receiver
VV93_v1c34150	COG0835	chemotaxis
VV93_v1c34160	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
VV93_v1c34170	COG0589	response to stress
VV93_v1c34180	COG0366	Alpha amylase catalytic
VV93_v1c34200	COG0840	transmembrane signaling receptor activity
VV93_v1c34270	COG0739	heme binding
VV93_v1c34290	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
VV93_v1c34310	COG2084	Dehydrogenase
VV93_v1c34350	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
VV93_v1c34390	COG0840	transmembrane signaling receptor activity
VV93_v1c34420	COG3706	GGDEF domain
VV93_v1c34430	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
VV93_v1c34430	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
VV93_v1c34440	COG1765	OsmC-like protein
VV93_v1c34450	COG2171	N-acyltransferase activity
VV93_v1c34480	COG1011	Hydrolase
VV93_v1c34530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
VV93_v1c34540	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
VV93_v1c34540	COG2207	Transcriptional regulator
VV93_v1c34570	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
VV93_v1c34580	COG1840	ABC-type Fe3 transport system, periplasmic component
VV93_v1c34590	COG3842	ATPase activity
VV93_v1c34630	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
VV93_v1c34640	COG0583	DNA-binding transcription factor activity
VV93_v1c34670	COG1760	l-serine dehydratase
VV93_v1c34710	COG1686	Belongs to the peptidase S11 family
VV93_v1c34780	COG0789	Transcriptional regulator
VV93_v1c34820	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c34960	COG3335	DDE superfamily endonuclease
VV93_v1c34970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
VV93_v1c35000	COG0346	lactoylglutathione lyase activity
VV93_v1c35020	COG0371	Dehydrogenase
VV93_v1c35030	COG5492	domain, Protein
VV93_v1c35030	COG4932	domain protein
VV93_v1c35070	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
VV93_v1c35130	COG1309	transcriptional regulator
VV93_v1c35180	COG4175	Glycine betaine
VV93_v1c35260	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
VV93_v1c35280	COG0247	lactate metabolic process
VV93_v1c35290	COG0546	phosphoglycolate phosphatase activity
VV93_v1c35310	COG1619	proteins homologs of microcin C7 resistance protein MccF
VV93_v1c35320	COG2133	pyrroloquinoline quinone binding
VV93_v1c35340	COG1454	alcohol dehydrogenase
VV93_v1c35350	COG0443	Heat shock 70 kDa protein
VV93_v1c35370	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
VV93_v1c35430	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
VV93_v1c35440	COG3174	membrane
VV93_v1c35500	COG0814	amino acid
VV93_v1c35510	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
VV93_v1c35560	COG2962	Rard protein
VV93_v1c35590	COG0671	phosphoesterase, PA-phosphatase related
VV93_v1c35610	COG1288	antiporter activity
VV93_v1c35640	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
VV93_v1c35680	COG2315	Protein conserved in bacteria
VV93_v1c35720	COG1129	ABC transporter
VV93_v1c35730	COG1172	Belongs to the binding-protein-dependent transport system permease family
VV93_v1c35740	COG1879	ABC-type sugar transport system periplasmic component
VV93_v1c35750	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
VV93_v1c35760	COG1609	Transcriptional regulator
VV93_v1c35780	COG0835	chemotaxis
VV93_v1c35780	COG0784	Response regulator, receiver
VV93_v1c35800	COG0456	acetyltransferase
VV93_v1c35830	COG1366	Belongs to the anti-sigma-factor antagonist family
VV93_v1c35850	COG2172	sigma factor antagonist activity
VV93_v1c35880	COG3437	response regulator, receiver
VV93_v1c35890	COG0420	3'-5' exonuclease activity
VV93_v1c35900	COG0419	ATPase involved in DNA repair
VV93_v1c35930	COG0583	DNA-binding transcription factor activity
VV93_v1c35970	COG4964	Belongs to the GSP D family
VV93_v1c36120	COG0471	metal ion transport
VV93_v1c36130	COG3290	protein histidine kinase activity
VV93_v1c36150	COG0110	maltose O-acetyltransferase activity
VV93_v1c36200	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
VV93_v1c36210	COG4605	iron ion homeostasis
VV93_v1c36220	COG4604	ABC transporter, ATP-binding protein
VV93_v1c36230	COG0789	Transcriptional regulator
VV93_v1c36290	COG1289	transmembrane transporter activity
VV93_v1c36300	COG0210	DNA helicase
VV93_v1c36320	COG1879	ABC-type sugar transport system periplasmic component
VV93_v1c36370	COG1262	PFAM Formylglycine-generating sulfatase enzyme
VV93_v1c36380	COG3005	denitrification pathway
VV93_v1c36430	COG0513	Belongs to the DEAD box helicase family
VV93_v1c36450	COG5001	Diguanylate cyclase
VV93_v1c36450	COG1716	ATPase activity
VV93_v1c36540	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
VV93_v1c36570	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
VV93_v1c36580	COG0513	Belongs to the DEAD box helicase family
VV93_v1c36600	COG3119	arylsulfatase activity
VV93_v1c36620	COG3119	arylsulfatase activity
VV93_v1c36630	COG0641	radical SAM
VV93_v1c36640	COG0714	Associated with various cellular activities
VV93_v1c36710	COG1524	type I phosphodiesterase nucleotide pyrophosphatase
VV93_v1c36730	COG0641	radical SAM
VV93_v1c36790	COG2814	Major facilitator Superfamily
VV93_v1c36850	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
VV93_v1c36870	COG1132	(ABC) transporter
VV93_v1c36900	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
VV93_v1c36900	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
VV93_v1c36920	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
VV93_v1c37010	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c37010	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
VV93_v1c37010	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
VV93_v1c37020	COG1105	Belongs to the carbohydrate kinase PfkB family
VV93_v1c37030	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c37030	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c37040	COG1609	Transcriptional regulator
VV93_v1c37090	COG0469	pyruvate kinase activity
VV93_v1c37100	COG2271	Major facilitator Superfamily
VV93_v1c37110	COG1840	ABC-type Fe3 transport system, periplasmic component
VV93_v1c37120	COG4191	Histidine kinase
VV93_v1c37140	COG1979	alcohol dehydrogenase
VV93_v1c37150	COG2207	Transcriptional regulator
VV93_v1c37170	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
VV93_v1c37180	COG2759	Belongs to the formate--tetrahydrofolate ligase family
VV93_v1c37190	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
VV93_v1c37220	COG0784	Response regulator, receiver
VV93_v1c37220	COG3437	response regulator, receiver
VV93_v1c37230	COG0546	phosphoglycolate phosphatase activity
VV93_v1c37270	COG0513	Belongs to the DEAD box helicase family
VV93_v1c37300	COG3038	cytochrome b561
VV93_v1c37320	COG2116	formate transmembrane transporter activity
VV93_v1c37330	COG0583	DNA-binding transcription factor activity
VV93_v1c37350	COG3593	DNA synthesis involved in DNA repair
VV93_v1c37360	COG0737	Belongs to the 5'-nucleotidase family
VV93_v1c37380	COG0861	Integral membrane protein TerC family
VV93_v1c37440	COG2267	carboxylic ester hydrolase activity
VV93_v1c37450	COG2067	long-chain fatty acid transport protein
VV93_v1c37480	COG2050	protein possibly involved in aromatic compounds catabolism
VV93_v1c37500	COG4533	DNA binding
VV93_v1c37520	COG0366	Alpha amylase catalytic
VV93_v1c37530	COG0583	DNA-binding transcription factor activity
VV93_v1c37570	COG0484	heat shock protein binding
VV93_v1c37600	COG5001	Diguanylate cyclase
VV93_v1c37600	COG1716	ATPase activity
VV93_v1c37610	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
VV93_v1c37630	COG4181	ATPase activity
VV93_v1c37640	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
VV93_v1c37650	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
VV93_v1c37650	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
VV93_v1c37660	COG1984	allophanate hydrolase subunit 2
VV93_v1c37670	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
VV93_v1c37680	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
VV93_v1c37700	COG3447	MASE1 domain protein
VV93_v1c37700	COG5001	Diguanylate cyclase
VV93_v1c37700	COG5002	protein histidine kinase activity
VV93_v1c37720	COG0583	DNA-binding transcription factor activity
VV93_v1c37730	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
VV93_v1c37730	COG1042	CoA-binding domain protein
VV93_v1c37730	COG0045	succinate-CoA ligase (ADP-forming) activity
VV93_v1c37750	COG1181	Belongs to the D-alanine--D-alanine ligase family
VV93_v1c37770	COG0023	Translation Initiation Factor
VV93_v1c38130	COG3140	Belongs to the UPF0181 family
VV93_v1c38160	COG0745	RESPONSE REGULATOR receiver
VV93_v1c38180	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
VV93_v1c38190	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
VV93_v1c38220	COG3706	GGDEF domain
VV93_v1c38220	COG0745	RESPONSE REGULATOR receiver
VV93_v1c38240	COG0745	RESPONSE REGULATOR receiver
VV93_v1c38260	COG1846	Transcriptional regulator
VV93_v1c38270	COG0697	spore germination
VV93_v1c38280	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
VV93_v1c38290	COG4149	molybdate abc transporter
VV93_v1c38300	COG0725	ABC transporter, periplasmic molybdate-binding protein
VV93_v1c38340	COG0189	ligase activity
VV93_v1c38340	COG4067	protein conserved in archaea
VV93_v1c38360	COG0840	transmembrane signaling receptor activity
VV93_v1c38370	COG0602	queuosine metabolic process
VV93_v1c38380	COG1328	CTP reductase activity
VV93_v1c38490	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
VV93_v1c38500	COG3118	belongs to the thioredoxin family
VV93_v1c38510	COG0477	Major facilitator Superfamily
VV93_v1c38530	COG0534	Mate efflux family protein
VV93_v1c38560	COG0840	transmembrane signaling receptor activity
VV93_v1c38570	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
VV93_v1c38600	COG0848	biopolymer transport protein
VV93_v1c38610	COG0811	peptide transport
VV93_v1c38620	COG0811	peptide transport
VV93_v1c38680	COG2146	nitrite reductase [NAD(P)H] activity
VV93_v1c38690	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
VV93_v1c38700	COG0840	transmembrane signaling receptor activity
VV93_v1c38750	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
VV93_v1c38770	COG5001	Diguanylate cyclase
VV93_v1c38770	COG4251	negative regulation of phosphorylation
VV93_v1c38770	COG2203	Gaf domain
VV93_v1c38770	COG3706	GGDEF domain
VV93_v1c38790	COG0010	Belongs to the arginase family
VV93_v1c38800	COG0513	Belongs to the DEAD box helicase family
VV93_v1c38820	COG0523	cobalamin synthesis protein
VV93_v1c38840	COG2199	diguanylate cyclase activity
VV93_v1c38870	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
VV93_v1c38870	COG2146	nitrite reductase [NAD(P)H] activity
VV93_v1c38880	COG1116	anion transmembrane transporter activity
VV93_v1c38890	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
VV93_v1c38900	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
VV93_v1c38900	COG1116	anion transmembrane transporter activity
VV93_v1c38910	COG3707	response regulator
VV93_v1c38940	COG1648	precorrin-2 dehydrogenase activity
VV93_v1c38940	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
VV93_v1c38950	COG0243	molybdopterin cofactor binding
VV93_v1c38960	COG0456	acetyltransferase
VV93_v1c38970	COG0366	Alpha amylase catalytic
VV93_v1c38980	COG0840	transmembrane signaling receptor activity
VV93_v1c38990	COG0840	transmembrane signaling receptor activity
VV93_v1c39020	COG2271	Major facilitator Superfamily
VV93_v1c39040	COG0584	glycerophosphoryl diester phosphodiesterase
VV93_v1c39050	COG0312	modulator of DNA gyrase
VV93_v1c39080	COG3069	C4-dicarboxylate transmembrane transporter activity
VV93_v1c39090	COG1704	LemA family
VV93_v1c39100	COG0501	Belongs to the peptidase M48B family
VV93_v1c39140	COG3209	COG3209 Rhs family protein
VV93_v1c39190	COG3209	COG3209 Rhs family protein
VV93_v1c39220	COG3501	Rhs element vgr protein
VV93_v1c39320	COG0631	protein serine/threonine phosphatase activity
VV93_v1c39420	COG2815	serine threonine protein kinase
VV93_v1c39420	COG0515	serine threonine protein kinase
VV93_v1c39460	COG3530	Putative quorum-sensing-regulated virulence factor
VV93_v1c39510	COG3186	Phenylalanine-4-hydroxylase
VV93_v1c39520	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
VV93_v1c39580	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
VV93_v1c39600	COG4191	Histidine kinase
VV93_v1c39600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
VV93_v1c39610	COG3437	response regulator, receiver
VV93_v1c39610	COG0784	Response regulator, receiver
VV93_v1c39730	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
VV93_v1c39730	COG3064	Membrane
VV93_v1c39730	COG1073	alpha beta
VV93_v1c39740	COG2994	toxin metabolic process
VV93_v1c39790	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c39810	COG1024	Enoyl-CoA hydratase
VV93_v1c39820	COG1024	Enoyl-CoA hydratase
VV93_v1c39830	COG1960	acyl-CoA dehydrogenase activity
VV93_v1c39850	COG0183	Belongs to the thiolase family
VV93_v1c39880	COG1960	acyl-CoA dehydrogenase activity
VV93_v1c39890	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
VV93_v1c39920	COG0450	alkyl hydroperoxide reductase
VV93_v1c39940	COG1278	Cold shock
VV93_v1c39990	COG1309	transcriptional regulator
VV93_v1c40000	COG2130	NADP-dependent
VV93_v1c40040	COG2197	response regulator
VV93_v1c40050	COG3851	Histidine kinase
VV93_v1c40060	COG2271	Major facilitator Superfamily
VV93_v1c40070	COG1482	cell wall glycoprotein biosynthetic process
VV93_v1c40080	COG2199	diguanylate cyclase activity
VV93_v1c40080	COG2203	Gaf domain
VV93_v1c40100	COG3036	rescue of stalled ribosome
VV93_v1c40110	COG1278	Cold shock
VV93_v1c40170	COG0545	Peptidyl-prolyl cis-trans isomerase
VV93_v1c40180	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
VV93_v1c40190	COG0840	transmembrane signaling receptor activity
VV93_v1c40230	COG2195	Cleaves the N-terminal amino acid of tripeptides
VV93_v1c40250	COG4989	oxidoreductase activity
VV93_v1c40310	COG1914	H( )-stimulated, divalent metal cation uptake system
VV93_v1c40330	COG0303	'Molybdopterin
VV93_v1c40340	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
VV93_v1c40360	COG2897	thiosulfate sulfurtransferase activity
VV93_v1c40400	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
VV93_v1c40410	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
VV93_v1c40440	COG0840	transmembrane signaling receptor activity
VV93_v1c40450	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
VV93_v1c40460	COG2885	chlorophyll binding
VV93_v1c40470	COG0109	protoheme IX farnesyltransferase activity
VV93_v1c40480	COG1612	heme a metabolic process
VV93_v1c40530	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
VV93_v1c40540	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
VV93_v1c40550	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
VV93_v1c40560	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
VV93_v1c40580	COG1280	lysine exporter protein (LysE YggA)
VV93_v1c40630	COG1846	Transcriptional regulator
VV93_v1c40640	COG1764	response to oxidative stress
VV93_v1c40660	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
VV93_v1c40690	COG0697	spore germination
VV93_v1c40730	COG2814	Major facilitator Superfamily
VV93_v1c40740	COG0583	DNA-binding transcription factor activity
VV93_v1c40750	COG5001	Diguanylate cyclase
VV93_v1c40750	COG4251	negative regulation of phosphorylation
VV93_v1c40750	COG3706	GGDEF domain
VV93_v1c40750	COG2203	Gaf domain
VV93_v1c40760	COG0251	oxidation-reduction process
VV93_v1c40790	COG4145	pantothenate transmembrane transporter activity
VV93_v1c40810	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
VV93_v1c40830	COG0837	glucose binding
VV93_v1c40830	COG1737	Transcriptional regulator
VV93_v1c40850	COG1131	(ABC) transporter
VV93_v1c40860	COG0842	Transport permease protein
VV93_v1c40930	COG1846	Transcriptional regulator
VV93_v1c40940	COG2514	catechol 2,3-dioxygenase activity
VV93_v1c40960	COG0513	Belongs to the DEAD box helicase family
VV93_v1c41010	COG3568	Endonuclease Exonuclease Phosphatase
VV93_v1c41040	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
VV93_v1c41110	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
VV93_v1c41110	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
VV93_v1c41150	COG2197	response regulator
VV93_v1c41160	COG3850	Histidine kinase
VV93_v1c41170	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
VV93_v1c41190	COG0243	molybdopterin cofactor binding
VV93_v1c41210	COG3005	denitrification pathway
VV93_v1c41230	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
VV93_v1c41240	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
VV93_v1c41250	COG1737	Transcriptional regulator
VV93_v1c41260	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
VV93_v1c41270	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
VV93_v1c41280	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
VV93_v1c41290	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
VV93_v1c41310	COG1940	carbohydrate kinase activity
VV93_v1c41320	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
VV93_v1c41360	COG0183	Belongs to the thiolase family
VV93_v1c41380	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
VV93_v1c41390	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
VV93_v1c41470	COG1879	ABC-type sugar transport system periplasmic component
VV93_v1c41490	COG2827	Endonuclease containing a URI domain
VV93_v1c41500	COG3132	Protein of unknown function, DUF480
VV93_v1c41530	COG0534	Mate efflux family protein
VV93_v1c41540	COG5002	protein histidine kinase activity
VV93_v1c41540	COG0784	Response regulator, receiver
VV93_v1c41540	COG2205	protein histidine kinase activity
VV93_v1c41590	COG0583	DNA-binding transcription factor activity
VV93_v1c41640	COG1522	sequence-specific DNA binding
VV93_v1c41650	COG0531	amino acid
VV93_v1c41660	COG0121	glutamine amidotransferase
VV93_v1c41690	COG2205	protein histidine kinase activity
VV93_v1c41700	COG0745	RESPONSE REGULATOR receiver
VV93_v1c41750	COG2239	Acts as a magnesium transporter
VV93_v1c41770	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
VV93_v1c41780	COG0402	S-adenosylhomocysteine deaminase activity
VV93_v1c41790	COG1067	ATP-dependent peptidase activity
VV93_v1c41810	COG4172	Belongs to the ABC transporter superfamily
VV93_v1c41820	COG1505	serine-type exopeptidase activity
VV93_v1c41830	COG0583	DNA-binding transcription factor activity
VV93_v1c41840	COG1620	l-lactate permease
VV93_v1c41860	COG1139	Iron-sulfur cluster binding protein
VV93_v1c41910	COG2814	Major facilitator Superfamily
VV93_v1c41970	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
VV93_v1c42000	COG3015	lipoprotein NlpE involved in copper resistance
VV93_v1c42010	COG1126	abc transporter atp-binding protein
VV93_v1c42020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
VV93_v1c42030	COG4215	(ABC) transporter
VV93_v1c42040	COG4160	amino acid transport
VV93_v1c42070	COG5002	protein histidine kinase activity
VV93_v1c42070	COG5001	Diguanylate cyclase
VV93_v1c42080	COG2755	lipolytic protein G-D-S-L family
VV93_v1c42100	COG0840	transmembrane signaling receptor activity
VV93_v1c42110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
VV93_v1c42180	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
VV93_v1c42190	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c42200	COG1169	isochorismate synthase
VV93_v1c42210	COG1021	2,3-dihydroxybenzoate-AMP ligase
VV93_v1c42250	COG1021	2,3-dihydroxybenzoate-AMP ligase
VV93_v1c42270	COG4607	ABC-type enterochelin transport system periplasmic component
VV93_v1c42280	COG1629	transport
VV93_v1c42280	COG4774	siderophore transport
VV93_v1c42310	COG4067	protein conserved in archaea
VV93_v1c42310	COG0189	ligase activity
VV93_v1c42360	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
VV93_v1c42390	COG0814	amino acid
VV93_v1c42400	COG0488	(ABC) transporter
VV93_v1c42430	COG1609	Transcriptional regulator
VV93_v1c42440	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c42470	COG0242	peptide deformylase activity
VV93_v1c42500	COG1253	flavin adenine dinucleotide binding
VV93_v1c42520	COG1012	belongs to the aldehyde dehydrogenase family
VV93_v1c42530	COG3284	Transcriptional regulator
VV93_v1c42550	COG1879	ABC-type sugar transport system periplasmic component
VV93_v1c42560	COG0625	glutathione transferase activity
VV93_v1c42580	COG0384	phenazine biosynthesis protein PhzF
VV93_v1c42630	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
VV93_v1c42640	COG0673	inositol 2-dehydrogenase activity
VV93_v1c42650	COG2067	long-chain fatty acid transport protein
VV93_v1c42690	COG2015	COG2015, Alkyl sulfatase and related hydrolases
VV93_v1c42710	COG0583	DNA-binding transcription factor activity
VV93_v1c42720	COG2194	sulfuric ester hydrolase activity
VV93_v1c42760	COG0798	PFAM Bile acid sodium symporter
VV93_v1c42770	COG0640	Transcriptional regulator
VV93_v1c42810	COG0583	DNA-binding transcription factor activity
VV93_v1c42840	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
VV93_v1c42850	COG0700	Nucleoside recognition
VV93_v1c42860	COG3366	ferrous iron transmembrane transporter activity
VV93_v1c42880	COG0366	Alpha amylase catalytic
VV93_v1c42890	COG0823	Involved in the tonB-independent uptake of proteins
VV93_v1c42900	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
VV93_v1c42930	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
VV93_v1c42960	COG0800	Aldolase
VV93_v1c42970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
VV93_v1c42980	COG0697	spore germination
VV93_v1c43000	COG0583	DNA-binding transcription factor activity
VV93_v1c43030	COG1566	PFAM secretion protein HlyD family protein
VV93_v1c43060	COG1917	Cupin 2, conserved barrel domain protein
VV93_v1c43080	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c43140	COG3153	acetyltransferase
VV93_v1c43140	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
VV93_v1c43180	COG0668	transmembrane transport
VV93_v1c43260	COG0494	nUDIX hydrolase
VV93_v1c43270	COG1881	PFAM PEBP family protein
VV93_v1c43280	COG2207	Transcriptional regulator
VV93_v1c43290	COG3046	protein related to deoxyribodipyrimidine photolyase
VV93_v1c43330	COG0745	RESPONSE REGULATOR receiver
VV93_v1c43340	COG2205	protein histidine kinase activity
VV93_v1c43380	COG0454	-acetyltransferase
VV93_v1c43390	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
VV93_v1c43440	COG1858	cytochrome C peroxidase
VV93_v1c43480	COG2814	Major facilitator Superfamily
VV93_v1c43540	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
VV93_v1c43560	COG0583	DNA-binding transcription factor activity
VV93_v1c43600	COG0513	Belongs to the DEAD box helicase family
VV93_v1c43670	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
VV93_v1c43690	COG1357	PFAM Pentapeptide repeats (8 copies)
VV93_v1c43730	COG3437	response regulator, receiver
VV93_v1c43750	COG0579	oxidoreductase
VV93_v1c43810	COG2015	COG2015, Alkyl sulfatase and related hydrolases
VV93_v1c43840	COG2205	protein histidine kinase activity
VV93_v1c43880	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
VV93_v1c43900	COG3706	GGDEF domain
VV93_v1c43980	COG2176	DNA-directed DNA polymerase activity
VV93_v1c43990	COG0577	efflux transmembrane transporter activity
VV93_v1c43990	COG1136	(ABC) transporter
VV93_v1c44060	COG1120	ATPase activity
VV93_v1c44070	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
VV93_v1c44150	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
VV93_v1c44160	COG3716	PTS system mannose fructose sorbose family IID component
VV93_v1c44180	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
VV93_v1c44190	COG2222	sugar isomerase
VV93_v1c44210	COG1349	DNA-binding transcription factor activity
VV93_v1c44220	COG1349	DNA-binding transcription factor activity
VV93_v1c44230	COG2200	EAL domain
VV93_v1c44240	COG0697	spore germination
VV93_v1c44280	COG2015	COG2015, Alkyl sulfatase and related hydrolases
VV93_v1c44330	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
VV93_v1c44340	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
VV93_v1c44380	COG0840	transmembrane signaling receptor activity
VV93_v1c44410	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
VV93_v1c44450	COG0583	DNA-binding transcription factor activity
VV93_v1c44460	COG1486	melibiose metabolic process
VV93_v1c44500	COG2258	MOSC domain
VV93_v1c44570	COG0513	Belongs to the DEAD box helicase family
VV93_v1c44590	COG2186	Transcriptional regulator
VV93_v1c44610	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
VV93_v1c44630	COG0246	Mannitol dehydrogenase
VV93_v1c44640	COG1904	glucuronate isomerase
VV93_v1c44650	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
VV93_v1c44660	COG0800	Aldolase
VV93_v1c44690	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c44700	COG2999	glutathione oxidoreductase activity
VV93_v1c44710	COG1902	pentaerythritol trinitrate reductase activity
VV93_v1c44770	COG0561	phosphatase activity
VV93_v1c44780	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
VV93_v1c44790	COG3623	hexulose-6-phosphate isomerase
VV93_v1c44820	COG1132	(ABC) transporter
VV93_v1c44830	COG5492	domain, Protein
VV93_v1c44840	COG5426	von Willebrand factor, type A
VV93_v1c44860	COG1028	Short-chain dehydrogenase reductase Sdr
VV93_v1c44880	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
VV93_v1c44890	COG0659	secondary active sulfate transmembrane transporter activity
VV93_v1c44930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
VV93_v1c44940	COG0601	transmembrane transport
VV93_v1c44950	COG0747	negative chemotaxis
VV93_v1c44970	COG3119	arylsulfatase activity
VV93_v1c44980	COG0641	radical SAM
VV93_v1c44990	COG3119	arylsulfatase activity
VV93_v1c45000	COG3119	arylsulfatase activity
VV93_v1c45010	COG5492	domain, Protein
VV93_v1c45060	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
VV93_v1c45140	COG2204	response regulator
VV93_v1c45230	COG0110	maltose O-acetyltransferase activity
VV93_v1c45250	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
VV93_v1c45250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
VV93_v1c45260	COG1737	Transcriptional regulator
VV93_v1c45280	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
VV93_v1c45280	COG1263	PTS System
VV93_v1c45300	COG2199	diguanylate cyclase activity
VV93_v1c45300	COG2203	Gaf domain
VV93_v1c45300	COG2200	EAL domain
VV93_v1c45310	COG0406	alpha-ribazole phosphatase activity
VV93_v1c45340	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
VV93_v1c45400	COG3706	GGDEF domain
VV93_v1c45400	COG0745	RESPONSE REGULATOR receiver
VV93_v1c45420	COG0840	transmembrane signaling receptor activity
VV93_v1c45430	COG2201	protein-glutamate methylesterase activity
VV93_v1c45450	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
VV93_v1c45460	COG0840	transmembrane signaling receptor activity
VV93_v1c45470	COG0835	chemotaxis
VV93_v1c45500	COG0745	RESPONSE REGULATOR receiver
VV93_v1c45520	COG1444	tRNA N-acetyltransferase activity
VV93_v1c45610	COG3093	addiction module antidote protein HigA