VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 Pfam PF02441 Flavoprotein 7 179 9.0E-45 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 Gene3D G3DSA:3.40.50.1950 1 186 8.7E-57 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 SUPERFAMILY SSF102645 184 399 4.84E-81 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 395 8.8E-152 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 SUPERFAMILY SSF52507 1 182 1.27E-61 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 Gene3D G3DSA:3.40.50.10300 187 400 7.9E-86 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VV93_v1c02750 3e341408c05b17753b21507e4deeec5d 401 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 1.0E-76 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 SUPERFAMILY SSF53633 14 265 5.11E-67 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 Pfam PF00696 Amino acid kinase family 14 243 7.5E-45 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PIRSF PIRSF000729 9 378 2.2E-138 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 Hamap MF_00456 Glutamate 5-kinase [proB]. 14 268 36.186 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 Gene3D G3DSA:2.30.130.10 275 377 1.2E-33 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 ProSitePatterns PS00902 Glutamate 5-kinase signature. 216 233 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 SMART SM00359 286 369 1.1E-20 T 11-10-2018 IPR002478 PUA domain GO:0003723 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 Gene3D G3DSA:3.40.1160.10 6 274 9.3E-89 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 SUPERFAMILY SSF88697 286 376 3.37E-25 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 Pfam PF01472 PUA domain 286 360 3.1E-25 T 11-10-2018 IPR002478 PUA domain GO:0003723 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 TIGRFAM TIGR01027 proB: glutamate 5-kinase 14 376 1.6E-148 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PRINTS PR00474 Glutamate 5-kinase family signature 85 113 2.3E-55 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PRINTS PR00474 Glutamate 5-kinase family signature 157 184 2.3E-55 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 2.3E-55 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PRINTS PR00474 Glutamate 5-kinase family signature 125 146 2.3E-55 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VV93_v1c07970 5636ab591e88a17aac089e29544034c7 379 PRINTS PR00474 Glutamate 5-kinase family signature 51 65 2.3E-55 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.2090.10 180 270 1.7E-257 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82693 46 137 2.14E-18 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82714 719 793 2.75E-7 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82693 146 325 7.32E-9 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82714 185 266 6.15E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:1.20.1640.10 502 1013 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.70.1430 46 803 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.70.1440 659 856 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.2090.10 708 795 1.7E-257 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.70.1320 139 327 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82866 293 488 4.05E-36 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:1.20.1640.10 16 501 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Gene3D G3DSA:3.30.70.1430 559 658 1.7E-257 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 SUPERFAMILY SSF82866 791 1019 1.44E-50 T 11-10-2018 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 Pfam PF00873 AcrB/AcrD/AcrF family 10 1016 5.1E-162 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 16 40 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 44 62 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c43210 08c024a881e3f32ec80d63d9161b36bd 1045 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.6E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 Pfam PF02401 LytB protein 3 284 6.8E-92 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 Gene3D G3DSA:3.40.50.11270 12 96 7.2E-108 T 11-10-2018 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 37.803 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 Gene3D G3DSA:3.40.1010.20 6 282 7.2E-108 T 11-10-2018 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 286 1.3E-96 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 VV93_v1c06300 28fbe48b90cf061a99a4d14b01804fc5 316 Gene3D G3DSA:3.40.1010.20 97 198 7.2E-108 T 11-10-2018 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 Gene3D G3DSA:2.40.420.20 277 368 1.4E-20 T 11-10-2018 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 Gene3D G3DSA:2.40.50.100 58 201 1.0E-74 T 11-10-2018 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 368 1.2E-80 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 SUPERFAMILY SSF111369 50 291 1.44E-63 T 11-10-2018 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 Gene3D G3DSA:1.10.287.470 93 166 1.0E-74 T 11-10-2018 VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 283 2.4E-13 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c40210 c82a5f8930d7863df2ee8eda49c0ec08 375 Gene3D G3DSA:2.40.30.170 52 276 1.0E-74 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 ProSitePatterns PS00324 Aspartokinase signature. 7 15 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 647 669 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:3.30.360.10 612 782 2.9E-103 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 SUPERFAMILY SSF53633 5 291 2.62E-57 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:1.20.120.1320 44 137 4.5E-74 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 8 445 4.6E-64 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 457 593 4.5E-15 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:3.40.50.720 451 799 2.9E-103 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:3.30.70.260 381 443 1.8E-5 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Pfam PF00742 Homoserine dehydrogenase 601 796 1.2E-42 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 SUPERFAMILY SSF51735 448 623 1.11E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Pfam PF00696 Amino acid kinase family 5 272 3.4E-42 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:3.40.1160.10 8 290 4.5E-74 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 PIRSF PIRSF000727 5 803 6.3E-299 T 11-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 SUPERFAMILY SSF55347 601 784 5.23E-45 T 11-10-2018 VV93_v1c27350 36bfef94981fc847ecfa48809c4c866f 803 Gene3D G3DSA:3.30.70.260 366 380 1.8E-5 T 11-10-2018 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 SUPERFAMILY SSF53271 69 306 8.14E-67 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 49.586 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 Gene3D G3DSA:3.40.50.2020 7 302 9.1E-135 T 11-10-2018 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 5.4E-125 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 SMART SM01400 4 121 7.0E-78 T 11-10-2018 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 2.7E-30 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 Gene3D G3DSA:3.40.50.2020 148 290 9.1E-135 T 11-10-2018 VV93_v1c08580 b296dfb4f4d0aaf11e871dcbd2699f5e 314 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.3E-50 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 SUPERFAMILY SSF110324 2 80 1.43E-34 T 11-10-2018 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-18 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 9.9E-44 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.8E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.8E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.8E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.447 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 Pfam PF01016 Ribosomal L27 protein 2 82 1.1E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04380 c5a516981688324e960ebf8e25793526 85 Gene3D G3DSA:2.40.50.100 21 85 2.5E-31 T 11-10-2018 VV93_v1c04370 e3aad298f1f3d8c38241881c09c62f66 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.3E-44 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04370 e3aad298f1f3d8c38241881c09c62f66 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c04370 e3aad298f1f3d8c38241881c09c62f66 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.497 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04370 e3aad298f1f3d8c38241881c09c62f66 103 SUPERFAMILY SSF141091 1 102 9.94E-39 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c04370 e3aad298f1f3d8c38241881c09c62f66 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.8E-40 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Gene3D G3DSA:3.30.160.40 222 307 5.6E-29 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 6 298 40.214 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PRINTS PR00151 Porphobilinogen deaminase signature 46 66 3.6E-48 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PRINTS PR00151 Porphobilinogen deaminase signature 77 96 3.6E-48 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PRINTS PR00151 Porphobilinogen deaminase signature 125 142 3.6E-48 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PRINTS PR00151 Porphobilinogen deaminase signature 144 161 3.6E-48 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PRINTS PR00151 Porphobilinogen deaminase signature 231 248 3.6E-48 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Gene3D G3DSA:3.40.190.10 7 211 1.6E-85 T 11-10-2018 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 232 248 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 214 1.5E-80 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 SUPERFAMILY SSF53850 6 220 3.26E-87 T 11-10-2018 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 SUPERFAMILY SSF54782 221 310 2.75E-28 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Gene3D G3DSA:3.40.190.10 104 203 1.6E-85 T 11-10-2018 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 PIRSF PIRSF001438 1 312 3.8E-124 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 298 5.5E-116 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00730 dd113d522a19a533e11949c8f6051286 312 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 228 296 3.2E-20 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c19240 e4286c8a2dcc18f54ce097437c343b44 211 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 75 185 1.6E-18 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c19240 e4286c8a2dcc18f54ce097437c343b44 211 Gene3D G3DSA:1.10.150.240 17 86 2.2E-44 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c19240 e4286c8a2dcc18f54ce097437c343b44 211 Gene3D G3DSA:3.40.50.1000 8 196 2.2E-44 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c19240 e4286c8a2dcc18f54ce097437c343b44 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 186 3.9E-32 T 11-10-2018 VV93_v1c19240 e4286c8a2dcc18f54ce097437c343b44 211 SUPERFAMILY SSF56784 4 210 5.56E-46 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:2.120.10.60 334 410 5.0E-7 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:2.120.10.60 30 321 9.4E-53 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF03572 Peptidase family S41 903 1057 7.2E-20 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SUPERFAMILY SSF52096 708 1085 1.29E-60 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SMART SM00245 864 1059 2.5E-4 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SUPERFAMILY SSF82171 157 545 1.14E-31 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 129 146 0.1 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 73 105 7.1E-7 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 370 404 4.4E-7 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 517 548 2.8E-8 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 229 264 3.3E-6 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF07676 WD40-like Beta Propeller Repeat 43 56 0.059 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:2.120.10.30 411 586 1.3E-17 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:2.30.42.10 800 879 2.2E-8 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 PIRSF PIRSF036421 28 1088 6.1E-204 T 11-10-2018 IPR012393 Tricorn protease GO:0008236 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF14685 Tricorn protease PDZ domain 822 863 3.2E-6 T 11-10-2018 IPR029414 Tricorn protease, PDZ domain VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Pfam PF14684 Tricorn protease C1 domain 711 778 2.0E-25 T 11-10-2018 IPR028204 Tricorn protease C1 domain VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:3.90.226.10 880 1088 7.3E-49 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SUPERFAMILY SSF69304 42 306 1.26E-35 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 Gene3D G3DSA:3.30.750.44 708 778 3.1E-14 T 11-10-2018 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SMART SM00228 789 862 1.1E-4 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c33300 0f24b51f6c8c03f30e921b086f11abd6 1088 SUPERFAMILY SSF50156 793 871 5.78E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 213 220 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 Gene3D G3DSA:3.40.605.10 15 438 8.8E-148 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 Gene3D G3DSA:3.40.309.10 217 418 8.8E-148 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 SUPERFAMILY SSF53720 10 452 1.57E-109 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 Pfam PF00171 Aldehyde dehydrogenase family 12 437 5.3E-83 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 PIRSF PIRSF036492 1 481 4.1E-163 T 11-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 VV93_v1c35620 a3630070a0b0c61efcfdabf129e40b05 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 241 252 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 Gene3D G3DSA:1.10.1040.10 167 296 9.1E-42 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 SUPERFAMILY SSF48179 167 290 1.46E-35 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 167 290 6.6E-36 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 141 3.2E-32 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 Gene3D G3DSA:3.40.50.720 1 166 6.8E-51 T 11-10-2018 VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 292 4.5E-83 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 VV93_v1c23180 a8c6505c3d9448cc8e7daab73480605a 296 SUPERFAMILY SSF51735 2 165 1.55E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c06370 776b03429a73b73df7a1e4d12f008693 328 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 229 246 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 VV93_v1c06370 776b03429a73b73df7a1e4d12f008693 328 SUPERFAMILY SSF51445 2 284 2.42E-84 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c06370 776b03429a73b73df7a1e4d12f008693 328 Gene3D G3DSA:3.20.20.300 1 327 7.0E-123 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 VV93_v1c06370 776b03429a73b73df7a1e4d12f008693 328 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 284 3.1E-81 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c06370 776b03429a73b73df7a1e4d12f008693 328 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 327 45.419 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR01032 Gene IV protein signature 538 566 1.8E-11 T 11-10-2018 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR01032 Gene IV protein signature 591 613 1.8E-11 T 11-10-2018 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR01032 Gene IV protein signature 470 493 1.8E-11 T 11-10-2018 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Pfam PF00263 Bacterial type II and III secretion system protein 449 611 6.9E-51 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 556 589 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Pfam PF03958 Bacterial type II/III secretion system short domain 125 186 8.4E-9 T 11-10-2018 IPR005644 NolW-like VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Pfam PF03958 Bacterial type II/III secretion system short domain 191 258 3.6E-14 T 11-10-2018 IPR005644 NolW-like VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Pfam PF03958 Bacterial type II/III secretion system short domain 266 343 1.1E-16 T 11-10-2018 IPR005644 NolW-like VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Gene3D G3DSA:3.30.1370.120 263 341 2.5E-16 T 11-10-2018 IPR038591 NolW-like superfamily VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 30 620 4.4E-157 T 11-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 343 353 6.0E-37 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 575 593 6.0E-37 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 598 612 6.0E-37 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 445 469 6.0E-37 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 PRINTS PR00811 Bacterial general secretion pathway protein D signature 480 490 6.0E-37 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Gene3D G3DSA:3.30.1370.120 22 185 7.9E-52 T 11-10-2018 IPR038591 NolW-like superfamily VV93_v1c01960 0e0695a5632df5593e349d5e4445b3f9 673 Gene3D G3DSA:3.30.1370.120 188 258 5.8E-20 T 11-10-2018 IPR038591 NolW-like superfamily VV93_v1c23780 a57fb2649f22855f79daceadb29c35ae 248 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 113 215 4.5E-29 T 11-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain VV93_v1c23780 a57fb2649f22855f79daceadb29c35ae 248 Pfam PF08666 SAF domain 45 105 1.0E-7 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VV93_v1c23780 a57fb2649f22855f79daceadb29c35ae 248 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 7 225 3.0E-74 T 11-10-2018 IPR017592 Pilus assembly, Flp-type CpaB VV93_v1c23780 a57fb2649f22855f79daceadb29c35ae 248 SMART SM00858 44 106 3.6E-7 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 Gene3D G3DSA:2.30.30.40 23 147 1.5E-28 T 11-10-2018 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 PIRSF PIRSF002867 1 308 2.5E-103 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 SMART SM00260 17 153 6.3E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 Pfam PF00072 Response regulator receiver domain 184 302 8.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 SUPERFAMILY SSF50341 16 157 1.26E-35 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 Gene3D G3DSA:3.40.50.2300 170 308 1.3E-25 T 11-10-2018 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 SUPERFAMILY SSF52172 183 306 5.55E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 Pfam PF01584 CheW-like domain 21 155 8.5E-35 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 Gene3D G3DSA:2.40.50.180 39 153 1.5E-28 T 11-10-2018 VV93_v1c08860 95b9670cfe68907bb6694ab74ab9ef81 308 SMART SM00448 182 302 2.0E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c40450 7a3d1dfb7e2d24f0ba47d00d70a1910f 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 9.1E-171 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c40450 7a3d1dfb7e2d24f0ba47d00d70a1910f 350 PIRSF PIRSF001361 1 350 7.2E-163 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c40450 7a3d1dfb7e2d24f0ba47d00d70a1910f 350 Pfam PF00793 DAHP synthetase I family 38 337 2.1E-108 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c40450 7a3d1dfb7e2d24f0ba47d00d70a1910f 350 Gene3D G3DSA:3.20.20.70 1 349 1.9E-166 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c40450 7a3d1dfb7e2d24f0ba47d00d70a1910f 350 SUPERFAMILY SSF51569 6 347 1.15E-139 T 11-10-2018 VV93_v1c08260 6c6b727d73bdfe022a6f7b3b4c37e2a1 258 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 256 9.7E-114 T 11-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VV93_v1c08260 6c6b727d73bdfe022a6f7b3b4c37e2a1 258 PIRSF PIRSF029037 1 258 5.5E-115 T 11-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Gene3D G3DSA:3.30.70.270 250 422 1.9E-49 T 11-10-2018 VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SMART SM00052 420 666 3.1E-104 T 11-10-2018 IPR001633 EAL domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SUPERFAMILY SSF55785 118 201 2.27E-7 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 255 407 8.8E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Pfam PF13188 PAS domain 132 183 9.7E-7 T 11-10-2018 IPR000014 PAS domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Gene3D G3DSA:3.20.20.450 423 676 4.7E-94 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Gene3D G3DSA:3.30.450.20 3 128 5.6E-13 T 11-10-2018 VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SUPERFAMILY SSF55785 13 118 3.66E-10 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SMART SM00267 238 410 1.3E-51 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Gene3D G3DSA:3.30.450.20 129 239 3.2E-8 T 11-10-2018 VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Pfam PF08448 PAS fold 15 120 6.2E-9 T 11-10-2018 IPR013656 PAS fold-4 VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SMART SM00091 131 197 0.012 T 11-10-2018 IPR000014 PAS domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SMART SM00091 8 74 1.2E-4 T 11-10-2018 IPR000014 PAS domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 120 6.8E-9 T 11-10-2018 IPR000014 PAS domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SUPERFAMILY SSF141868 427 674 1.57E-84 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Pfam PF00990 Diguanylate cyclase, GGDEF domain 254 406 5.0E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 SUPERFAMILY SSF55073 258 412 1.49E-45 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c24110 15a8aa586565a4635a74109d14e558ab 679 Pfam PF00563 EAL domain 427 661 3.6E-72 T 11-10-2018 IPR001633 EAL domain VV93_v1c31210 10ebdcdd3a5dec87d5cb282acff0b2ee 363 Gene3D G3DSA:3.30.70.270 210 363 2.1E-38 T 11-10-2018 VV93_v1c31210 10ebdcdd3a5dec87d5cb282acff0b2ee 363 SUPERFAMILY SSF55073 219 361 7.77E-37 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c31210 10ebdcdd3a5dec87d5cb282acff0b2ee 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 215 360 8.5E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c31210 10ebdcdd3a5dec87d5cb282acff0b2ee 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 212 360 9.4E-31 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c31210 10ebdcdd3a5dec87d5cb282acff0b2ee 363 SMART SM00267 202 363 7.9E-32 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 SUPERFAMILY SSF90123 15 326 7.32E-75 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 Gene3D G3DSA:3.40.50.300 337 585 3.7E-94 T 11-10-2018 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 SMART SM00382 371 557 9.1E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 Gene3D G3DSA:1.20.1560.10 11 332 2.1E-84 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 7 582 1.8E-288 T 11-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 Pfam PF00664 ABC transporter transmembrane region 29 291 1.9E-49 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 Pfam PF00005 ABC transporter 363 511 6.6E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c36870 fd555689d830117301c22e6caa6a5d79 586 SUPERFAMILY SSF52540 336 582 6.91E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16500 576a723ac313ff5d639444cd7fe66c4e 154 Gene3D G3DSA:3.10.400.10 1 154 1.2E-60 T 11-10-2018 VV93_v1c16500 576a723ac313ff5d639444cd7fe66c4e 154 Pfam PF04266 ASCH domain 42 153 2.4E-24 T 11-10-2018 IPR007374 ASCH domain VV93_v1c16500 576a723ac313ff5d639444cd7fe66c4e 154 SUPERFAMILY SSF88697 4 153 7.46E-53 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c16500 576a723ac313ff5d639444cd7fe66c4e 154 PIRSF PIRSF021320 2 154 1.3E-42 T 11-10-2018 IPR009326 Protein of unknown function DUF984 VV93_v1c16500 576a723ac313ff5d639444cd7fe66c4e 154 SMART SM01022 30 153 2.3E-41 T 11-10-2018 IPR007374 ASCH domain VV93_v1c41270 242eccc1a5eba6920e25e86520325e29 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 15 419 1.4E-141 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c41270 242eccc1a5eba6920e25e86520325e29 427 PIRSF PIRSF006066 1 425 1.2E-140 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c41270 242eccc1a5eba6920e25e86520325e29 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 414 1.1E-118 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 Gene3D G3DSA:3.40.1380.10 61 207 3.3E-111 T 11-10-2018 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 SUPERFAMILY SSF52943 2 288 1.47E-96 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 Pfam PF00231 ATP synthase 5 287 5.7E-99 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 1.9E-112 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 36.971 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 5.5E-37 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 5.5E-37 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 5.5E-37 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 5.5E-37 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29740 835f58a5d222325893b5d904a80af08d 288 Gene3D G3DSA:1.10.287.80 6 284 3.3E-111 T 11-10-2018 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 SMART SM00448 14 125 8.0E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Gene3D G3DSA:1.10.8.60 323 384 1.3E-14 T 11-10-2018 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Pfam PF00158 Sigma-54 interaction domain 155 318 8.2E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Pfam PF00072 Response regulator receiver domain 16 125 2.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 361 370 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 SUPERFAMILY SSF52172 14 198 1.32E-41 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 SUPERFAMILY SSF46689 395 450 1.08E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Gene3D G3DSA:3.40.50.300 145 322 2.6E-56 T 11-10-2018 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Gene3D G3DSA:3.40.50.2300 12 144 2.5E-34 T 11-10-2018 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 241 256 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 179 192 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 SUPERFAMILY SSF52540 155 377 4.7E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 SMART SM00382 175 315 1.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Pfam PF02954 Bacterial regulatory protein, Fis family 409 448 7.5E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c43780 ddb639f46039e6f466eee2052df0a143 458 Gene3D G3DSA:1.10.10.60 402 452 1.5E-7 T 11-10-2018 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 SUPERFAMILY SSF48452 38 199 1.29E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 Gene3D G3DSA:1.25.40.10 37 243 9.1E-37 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 Pfam PF14559 Tetratricopeptide repeat 152 199 1.2E-6 T 11-10-2018 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 Pfam PF13431 Tetratricopeptide repeat 94 125 1.4E-7 T 11-10-2018 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 SMART SM00028 38 71 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 SMART SM00028 142 175 4.3 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 SMART SM00028 72 105 0.65 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 SMART SM00028 106 139 41.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14000 be0d1989d484c395a7629f1d532f2755 244 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 240 1.3E-87 T 11-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 Pfam PF13356 Arm DNA-binding domain 5 91 6.6E-20 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 Gene3D G3DSA:3.30.160.390 3 92 1.6E-27 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 SUPERFAMILY SSF56349 103 383 1.41E-56 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 Gene3D G3DSA:1.10.443.10 211 388 2.9E-19 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 Pfam PF00589 Phage integrase family 210 373 2.6E-24 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c19700 43354496473a42c2b1788e1c61fb8d95 410 Gene3D G3DSA:1.10.150.130 97 210 2.8E-27 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 SUPERFAMILY SSF51905 1 428 1.01E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 4 423 7.3E-192 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 2 427 50.724 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 PIRSF PIRSF000141 2 430 2.2E-183 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 Pfam PF00890 FAD binding domain 5 411 1.4E-71 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c35270 688bad3bc2e6f381a93a19b18f873495 438 Gene3D G3DSA:3.50.50.60 2 109 9.1E-8 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c34220 00bec445670812620ddb1997f9db18d4 407 Pfam PF04932 O-Antigen ligase 186 340 2.3E-13 T 11-10-2018 IPR007016 O-antigen ligase-related VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 Pfam PF00155 Aminotransferase class I and II 133 447 1.7E-32 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 9.1E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 SUPERFAMILY SSF46785 1 68 7.08E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 SUPERFAMILY SSF53383 83 463 6.78E-95 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 SMART SM00345 7 66 5.4E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 Gene3D G3DSA:3.40.640.10 138 357 2.6E-102 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 Gene3D G3DSA:1.10.10.10 1 68 3.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c18560 6f87f739ea9caa321603bc419ffcbc0f 468 Gene3D G3DSA:3.90.1150.10 98 462 2.6E-102 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 Pfam PF12973 ChrR Cupin-like domain 130 196 3.7E-14 T 11-10-2018 IPR025979 ChrR-like cupin domain VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 Pfam PF13490 Putative zinc-finger 9 37 4.5E-6 T 11-10-2018 IPR027383 Putative zinc-finger VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 Gene3D G3DSA:1.10.10.1320 1 108 9.0E-15 T 11-10-2018 VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 3 219 8.6E-88 T 11-10-2018 IPR012807 Anti-sigma factor ChrR, putative VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 SUPERFAMILY SSF51182 112 206 1.1E-14 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c23140 eed8ff7e8e63e01a10ff4713b44271f4 222 Gene3D G3DSA:2.60.120.10 110 200 1.5E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c17270 5bdc9209433e26a4f3e4473f67088cd3 214 SUPERFAMILY SSF52499 4 205 8.24E-25 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c17270 5bdc9209433e26a4f3e4473f67088cd3 214 Gene3D G3DSA:3.40.50.850 6 209 8.2E-32 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c17270 5bdc9209433e26a4f3e4473f67088cd3 214 Pfam PF00857 Isochorismatase family 9 204 6.6E-22 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Gene3D G3DSA:1.10.287.470 77 104 1.1E-9 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Gene3D G3DSA:1.10.287.470 107 191 6.4E-17 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Gene3D G3DSA:2.40.50.100 106 236 6.4E-17 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 SUPERFAMILY SSF111369 38 123 5.75E-8 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Gene3D G3DSA:2.40.30.170 237 319 6.4E-17 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Pfam PF13533 Biotin-lipoyl like 45 89 5.2E-10 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Pfam PF13437 HlyD family secretion protein 207 281 6.7E-5 T 11-10-2018 VV93_v1c14760 55097f22721eff887e42d1fe9bbe5d5d 324 Gene3D G3DSA:2.40.50.100 42 76 1.1E-9 T 11-10-2018 VV93_v1c13410 fabb479300a5f32f5267007298774ec8 831 Pfam PF00027 Cyclic nucleotide-binding domain 727 813 1.0E-6 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c13410 fabb479300a5f32f5267007298774ec8 831 SUPERFAMILY SSF51206 701 825 7.33E-14 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c13410 fabb479300a5f32f5267007298774ec8 831 Pfam PF00999 Sodium/hydrogen exchanger family 11 426 7.5E-62 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c13410 fabb479300a5f32f5267007298774ec8 831 Gene3D G3DSA:2.60.120.10 666 830 2.8E-13 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 368 44.946 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 301 330 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 368 2.4E-192 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 SUPERFAMILY SSF53335 10 367 4.26E-55 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 Gene3D G3DSA:3.40.50.150 13 363 3.2E-141 T 11-10-2018 VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 350 360 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 368 3.4E-196 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VV93_v1c01160 092ce2757f889ca0453a012c7c0d88ac 369 Gene3D G3DSA:3.40.1350.30 45 189 3.2E-141 T 11-10-2018 VV93_v1c18660 84a4ecc9f3730c6f0169674afdc7d17e 238 SMART SM00479 47 228 1.0E-19 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c18660 84a4ecc9f3730c6f0169674afdc7d17e 238 Gene3D G3DSA:3.30.420.10 44 230 7.9E-38 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c18660 84a4ecc9f3730c6f0169674afdc7d17e 238 Pfam PF00929 Exonuclease 49 219 2.4E-15 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c18660 84a4ecc9f3730c6f0169674afdc7d17e 238 SUPERFAMILY SSF53098 47 227 9.38E-39 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c05150 606604add7de180cd072e293bba3d709 203 Pfam PF08239 Bacterial SH3 domain 32 82 7.2E-7 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type VV93_v1c05150 606604add7de180cd072e293bba3d709 203 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 24 202 2.9E-53 T 11-10-2018 IPR016476 SH3 domain protein VV93_v1c05150 606604add7de180cd072e293bba3d709 203 SMART SM00287 20 86 1.2E-7 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type VV93_v1c05150 606604add7de180cd072e293bba3d709 203 PIRSF PIRSF006158 1 203 7.2E-73 T 11-10-2018 IPR016476 SH3 domain protein VV93_v1c05150 606604add7de180cd072e293bba3d709 203 Gene3D G3DSA:2.30.30.40 30 86 1.3E-7 T 11-10-2018 VV93_v1c24890 a0743be8046818597f05adf7d679d6df 155 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 7.2E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c24890 a0743be8046818597f05adf7d679d6df 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 33 1.8E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c24890 a0743be8046818597f05adf7d679d6df 155 Gene3D G3DSA:3.30.700.10 13 155 1.3E-25 T 11-10-2018 VV93_v1c24890 a0743be8046818597f05adf7d679d6df 155 SUPERFAMILY SSF54523 13 101 2.04E-20 T 11-10-2018 VV93_v1c24890 a0743be8046818597f05adf7d679d6df 155 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c13420 3378667bcac845b5489823bc88ff5d0a 502 Pfam PF13460 NAD(P)H-binding 28 137 1.5E-11 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c13420 3378667bcac845b5489823bc88ff5d0a 502 Pfam PF11066 Protein of unknown function (DUF2867) 352 485 2.2E-12 T 11-10-2018 IPR021295 Protein of unknown function DUF2867 VV93_v1c13420 3378667bcac845b5489823bc88ff5d0a 502 Gene3D G3DSA:3.40.50.720 22 286 1.3E-32 T 11-10-2018 VV93_v1c13420 3378667bcac845b5489823bc88ff5d0a 502 SUPERFAMILY SSF51735 21 314 2.5E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 Gene3D G3DSA:3.40.190.10 24 244 6.6E-72 T 11-10-2018 VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 Pfam PF13531 Bacterial extracellular solute-binding protein 23 244 2.0E-45 T 11-10-2018 VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 PIRSF PIRSF004846 3 248 1.1E-64 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 27 243 6.4E-60 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 Gene3D G3DSA:3.40.190.10 100 210 6.6E-72 T 11-10-2018 VV93_v1c38300 0f84eb22842062ca4e4c29f7fbbaab3b 250 SUPERFAMILY SSF53850 23 245 2.13E-59 T 11-10-2018 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 476 4.6E-147 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 Gene3D G3DSA:3.20.20.60 3 339 8.2E-141 T 11-10-2018 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 Pfam PF02887 Pyruvate kinase, alpha/beta domain 381 441 1.7E-8 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 SUPERFAMILY SSF52935 350 477 8.61E-21 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 SUPERFAMILY SSF50800 71 168 3.31E-23 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 Gene3D G3DSA:3.40.1380.20 340 472 8.2E-141 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 221 247 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 248 272 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 298 316 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 59 75 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 188 202 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 273 297 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 PRINTS PR01050 Pyruvate kinase family signature 317 333 4.4E-53 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 Gene3D G3DSA:2.40.33.10 70 170 8.2E-141 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 SUPERFAMILY SSF51621 3 345 4.71E-87 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c37090 3f98ec2c6e8ff5ced8ed31188f4430c9 489 Pfam PF00224 Pyruvate kinase, barrel domain 3 342 1.9E-125 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c29450 ddb9c860f95ae154ace8ab3fb34de2f9 367 SUPERFAMILY SSF102405 81 286 4.27E-40 T 11-10-2018 VV93_v1c29450 ddb9c860f95ae154ace8ab3fb34de2f9 367 Pfam PF02481 DNA recombination-mediator protein A 76 278 6.6E-75 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 VV93_v1c29450 ddb9c860f95ae154ace8ab3fb34de2f9 367 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 75 286 2.5E-77 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 VV93_v1c29450 ddb9c860f95ae154ace8ab3fb34de2f9 367 Gene3D G3DSA:3.40.50.450 1 291 1.0E-93 T 11-10-2018 VV93_v1c29450 ddb9c860f95ae154ace8ab3fb34de2f9 367 Gene3D G3DSA:1.10.10.10 295 362 5.0E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Gene3D G3DSA:3.40.1140.10 1383 1469 1.5E-38 T 11-10-2018 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 PIRSF PIRSF005246 1 1487 0.0 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Gene3D G3DSA:1.20.58.850 621 831 1.6E-133 T 11-10-2018 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Gene3D G3DSA:3.40.1140.10 1 227 1.5E-98 T 11-10-2018 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1472 11.115 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Pfam PF16330 MukB hinge domain 646 811 1.5E-71 T 11-10-2018 IPR032520 MukB, hinge domain VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Gene3D G3DSA:1.20.1060.30 668 779 1.6E-133 T 11-10-2018 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Pfam PF04310 MukB N-terminal 2 227 1.8E-121 T 11-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 SUPERFAMILY SSF52540 26 224 2.66E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1337 1425 1.3E-14 T 11-10-2018 VV93_v1c20100 31c377b43818238ec5d02209be54914a 1487 Gene3D G3DSA:1.20.58.850 583 853 1.6E-133 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SUPERFAMILY SSF50447 261 399 5.52E-32 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Gene3D G3DSA:3.40.50.300 1 290 6.4E-101 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SUPERFAMILY SSF52540 3 278 2.32E-99 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SUPERFAMILY SSF54980 401 478 1.65E-20 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.2E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.2E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.2E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.2E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Gene3D G3DSA:3.30.70.240 601 671 2.1E-84 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Pfam PF14492 Elongation Factor G, domain II 401 474 6.8E-29 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SUPERFAMILY SSF54980 600 689 2.34E-29 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Gene3D G3DSA:2.40.30.10 293 413 1.0E-42 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Pfam PF00679 Elongation factor G C-terminus 597 683 2.0E-28 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SUPERFAMILY SSF54211 476 596 1.09E-40 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 174 3.5E-25 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Pfam PF03764 Elongation factor G, domain IV 476 594 4.1E-44 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Gene3D G3DSA:3.30.70.870 430 480 2.0E-20 T 11-10-2018 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Gene3D G3DSA:3.30.230.10 481 684 2.1E-84 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Hamap MF_00054_B Elongation factor G [fusA]. 3 688 103.449 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SMART SM00889 477 595 1.2E-62 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Pfam PF03144 Elongation factor Tu domain 2 321 388 1.6E-16 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 TIGRFAM TIGR00484 EF-G: translation elongation factor G 3 689 2.4E-297 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 SMART SM00838 597 684 2.2E-46 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c23890 3462f156e8538d666a3fec1ce4af9fbc 695 Pfam PF00009 Elongation factor Tu GTP binding domain 6 278 4.2E-60 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c35300 13c4c38fc6828615e68a5523c81c075a 358 SUPERFAMILY SSF53383 27 349 1.33E-72 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c35300 13c4c38fc6828615e68a5523c81c075a 358 Pfam PF01212 Beta-eliminating lyase 28 292 6.0E-32 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VV93_v1c35300 13c4c38fc6828615e68a5523c81c075a 358 Gene3D G3DSA:3.90.1150.10 254 358 5.8E-10 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c35300 13c4c38fc6828615e68a5523c81c075a 358 Gene3D G3DSA:3.40.640.10 2 253 9.3E-64 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 Gene3D G3DSA:2.40.50.140 32 125 5.5E-32 T 11-10-2018 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 SMART SM00316 37 119 2.1E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 SUPERFAMILY SSF50249 40 124 1.26E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 Gene3D G3DSA:3.40.1260.20 400 508 1.1E-38 T 11-10-2018 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 Pfam PF00575 S1 RNA binding domain 37 118 1.3E-13 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 Pfam PF10150 Ribonuclease E/G family 121 390 5.2E-95 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 Hamap MF_00970 Ribonuclease E [rne]. 1 1023 35.526 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 VV93_v1c11840 14e44cc673d98e6f69fc6fc07e3eb305 1036 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 6.7E-171 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 VV93_v1c31520 07d918ecdbbebdf1fcdf7483f44829ed 565 Pfam PF00849 RNA pseudouridylate synthase 371 518 8.6E-29 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c31520 07d918ecdbbebdf1fcdf7483f44829ed 565 SUPERFAMILY SSF55120 355 562 2.08E-59 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c31520 07d918ecdbbebdf1fcdf7483f44829ed 565 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 409 423 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c31520 07d918ecdbbebdf1fcdf7483f44829ed 565 Gene3D G3DSA:3.30.2350.10 353 564 1.4E-62 T 11-10-2018 VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 SMART SM00220 78 325 7.9E-26 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 84 109 - T 11-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 Pfam PF00069 Protein kinase domain 78 272 3.9E-37 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 197 209 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 SUPERFAMILY SSF56112 72 273 5.4E-51 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c00480 2d9f59987442ac25f2db21ae407f7bec 444 Gene3D G3DSA:1.10.510.10 58 324 4.6E-49 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.70.1320 135 327 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.2090.10 178 268 3.8E-258 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.4E-28 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Pfam PF00873 AcrB/AcrD/AcrF family 9 1021 1.9E-169 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82693 41 133 2.17E-22 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82866 289 490 2.35E-41 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.70.1430 41 799 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:1.20.1640.10 12 509 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.70.1440 652 849 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.2090.10 703 791 3.8E-258 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82693 147 325 4.39E-13 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82866 787 1023 2.62E-49 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:3.30.70.1430 565 651 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 Gene3D G3DSA:1.20.1640.10 510 1018 3.8E-258 T 11-10-2018 VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82714 184 263 1.18E-10 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c24400 880387fd3b88135263ee4bc2b4e4a973 1060 SUPERFAMILY SSF82714 706 788 4.05E-5 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 193 2.3E-36 T 11-10-2018 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 98 189 6.1E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 6 225 35.098 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 9 223 7.2E-59 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 194 9.0E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 Gene3D G3DSA:1.10.150.240 21 94 1.2E-63 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 SUPERFAMILY SSF56784 5 224 4.07E-60 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 88 193 6.8E-15 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VV93_v1c27870 14e306c2c706d5a6a06bff3e73740bd3 228 Gene3D G3DSA:3.40.50.1000 9 216 1.2E-63 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c20840 dd0310852443d068231227fdc1f0e74e 386 Pfam PF09002 Domain of unknown function (DUF1887) 1 379 8.2E-169 T 11-10-2018 IPR015093 Protein of unknown function DUF1887 VV93_v1c20840 dd0310852443d068231227fdc1f0e74e 386 Gene3D G3DSA:3.40.1350.10 251 376 2.7E-78 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VV93_v1c20840 dd0310852443d068231227fdc1f0e74e 386 SUPERFAMILY SSF52980 1 382 6.97E-121 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c20840 dd0310852443d068231227fdc1f0e74e 386 Gene3D G3DSA:1.10.10.680 169 250 2.7E-78 T 11-10-2018 VV93_v1c20840 dd0310852443d068231227fdc1f0e74e 386 Gene3D G3DSA:3.40.50.10770 1 140 1.0E-58 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 784 3.6E-64 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Pfam PF00391 PEP-utilising enzyme, mobile domain 384 454 1.8E-26 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 SUPERFAMILY SSF52009 348 466 1.83E-34 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Gene3D G3DSA:3.30.1490.20 1 192 7.9E-73 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 787 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 PIRSF PIRSF000854 1 790 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Gene3D G3DSA:3.50.30.10 358 476 3.5E-41 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 342 3.8E-118 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 SUPERFAMILY SSF56059 1 383 3.53E-109 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 1.3E-5 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 1.3E-5 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 1.3E-5 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 SUPERFAMILY SSF51621 460 789 4.19E-101 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Gene3D G3DSA:3.20.20.60 477 787 1.9E-106 T 11-10-2018 VV93_v1c35210 87acb6e42ecfa9b52f720c24d5102e6e 790 Gene3D G3DSA:3.30.470.20 193 356 2.0E-57 T 11-10-2018 VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 Gene3D G3DSA:3.40.190.10 169 272 3.8E-59 T 11-10-2018 VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 Gene3D G3DSA:1.10.10.10 9 97 6.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 9.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 Gene3D G3DSA:3.40.190.10 98 298 3.8E-59 T 11-10-2018 VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 SUPERFAMILY SSF46785 10 117 1.21E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 SUPERFAMILY SSF53850 94 301 1.09E-39 T 11-10-2018 VV93_v1c32070 e590af39d0bbaaba05746b3e66133a5e 304 Pfam PF03466 LysR substrate binding domain 94 300 7.5E-41 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 SUPERFAMILY SSF81296 38 121 1.18E-11 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Gene3D G3DSA:2.60.40.1180 639 741 7.5E-29 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 149 223 6.5E-20 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Gene3D G3DSA:3.20.20.80 240 638 7.1E-162 T 11-10-2018 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 SUPERFAMILY SSF51011 639 741 4.68E-26 T 11-10-2018 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 SUPERFAMILY SSF81296 155 209 1.18E-6 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 PIRSF PIRSF000463 25 742 4.4E-279 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 SMART SM00642 266 611 2.6E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 132 738 3.0E-246 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Gene3D G3DSA:2.60.40.10 22 236 1.2E-50 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Pfam PF00128 Alpha amylase, catalytic domain 291 365 2.5E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 SUPERFAMILY SSF51445 199 632 2.25E-109 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 644 741 2.5E-16 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VV93_v1c30910 2d2fcebf0b5aa36f051675d1b9f5ab04 742 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 107 742 41.131 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 Pfam PF03466 LysR substrate binding domain 122 291 3.3E-13 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 Gene3D G3DSA:3.40.190.290 133 289 3.9E-7 T 11-10-2018 VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 Gene3D G3DSA:1.10.10.10 5 90 1.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 SUPERFAMILY SSF53850 96 291 1.19E-16 T 11-10-2018 VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37720 8aefa0c56309fe0a2ba8ce7c5c2f12c2 295 SUPERFAMILY SSF46785 6 86 1.34E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 9.2E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 499 528 9.2E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 Gene3D G3DSA:3.30.450.20 64 174 7.3E-24 T 11-10-2018 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 421 600 3.7E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 SUPERFAMILY SSF58104 325 634 4.97E-72 T 11-10-2018 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 SMART SM00283 372 633 4.9E-65 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 SUPERFAMILY SSF103190 119 185 1.62E-10 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 Gene3D G3DSA:3.30.450.20 57 276 7.3E-24 T 11-10-2018 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 Pfam PF02743 Cache domain 35 265 2.2E-21 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 Gene3D G3DSA:1.10.287.950 304 635 2.6E-67 T 11-10-2018 VV93_v1c35530 760bff629846f9ac91a440a3412c5b32 635 SMART SM00304 303 357 2.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c01050 8c1c7eca1d017aa3da3611961167a6bc 106 SMART SM00450 7 102 2.2E-17 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c01050 8c1c7eca1d017aa3da3611961167a6bc 106 Gene3D G3DSA:3.40.250.10 1 101 4.5E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c01050 8c1c7eca1d017aa3da3611961167a6bc 106 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 32.601 T 11-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 VV93_v1c01050 8c1c7eca1d017aa3da3611961167a6bc 106 SUPERFAMILY SSF52821 1 105 1.96E-28 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c01050 8c1c7eca1d017aa3da3611961167a6bc 106 Pfam PF00581 Rhodanese-like domain 13 98 4.4E-11 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 SUPERFAMILY SSF46785 3 84 8.5E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 Pfam PF04337 Protein of unknown function, DUF480 5 158 1.1E-65 T 11-10-2018 IPR007432 Protein of unknown function DUF480 VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 Gene3D G3DSA:1.10.10.10 1 90 9.3E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 214 35.272 T 11-10-2018 IPR007432 Protein of unknown function DUF480 VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 SUPERFAMILY SSF46785 90 174 4.62E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41500 34b6b2cf68ab1b138ae3a0938aa03947 220 Gene3D G3DSA:1.10.10.10 95 175 1.5E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 3.5E-144 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 SUPERFAMILY SSF55205 1 424 3.92E-146 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 Gene3D G3DSA:3.65.10.10 242 419 1.5E-160 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 421 4.9E-158 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 Gene3D G3DSA:3.65.10.10 20 224 1.5E-160 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 427 35.627 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VV93_v1c20270 c28396d56ee8641b11bf826bbbaf16d7 428 PIRSF PIRSF000505 1 427 9.1E-158 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 Pfam PF08238 Sel1 repeat 139 170 5.9 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 Pfam PF08238 Sel1 repeat 80 97 0.49 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 Pfam PF08238 Sel1 repeat 209 242 1.0E-5 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 Pfam PF08238 Sel1 repeat 172 206 4.7E-4 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 SUPERFAMILY SSF81901 79 283 7.24E-30 T 11-10-2018 VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 SMART SM00671 207 242 4.1E-5 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 SMART SM00671 171 206 0.0043 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 SMART SM00671 135 170 0.075 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c30660 d87149467180c4187d0848a57ff43109 393 Gene3D G3DSA:1.25.40.10 59 289 4.1E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02880 1a8309811bc1edf667ca9d3686901bc9 236 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 30 232 2.4E-79 T 11-10-2018 VV93_v1c02880 1a8309811bc1edf667ca9d3686901bc9 236 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 2 234 44.54 T 11-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 VV93_v1c02880 1a8309811bc1edf667ca9d3686901bc9 236 SUPERFAMILY SSF56112 44 195 4.99E-20 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c02880 1a8309811bc1edf667ca9d3686901bc9 236 Gene3D G3DSA:1.10.510.10 136 236 7.8E-15 T 11-10-2018 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Pfam PF13241 Putative NAD(P)-binding 6 116 5.8E-30 T 11-10-2018 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Gene3D G3DSA:1.10.8.210 150 206 5.8E-9 T 11-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Pfam PF10414 Sirohaem synthase dimerisation region 151 206 3.8E-14 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Gene3D G3DSA:3.30.160.110 114 149 2.5E-13 T 11-10-2018 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 SUPERFAMILY SSF51735 1 113 6.3E-27 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 SUPERFAMILY SSF53790 224 301 5.09E-5 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 197 1.0E-61 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Gene3D G3DSA:3.40.1010.10 210 306 1.7E-5 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Gene3D G3DSA:3.40.50.720 1 113 8.4E-34 T 11-10-2018 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 SUPERFAMILY SSF75615 115 201 7.72E-23 T 11-10-2018 VV93_v1c14630 84078d3f0a078f1840ea48071974ef0b 306 Pfam PF14824 Sirohaem biosynthesis protein central 120 146 3.1E-6 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 Pfam PF00814 Glycoprotease family 30 227 1.3E-31 T 11-10-2018 IPR000905 Gcp-like domain VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 SUPERFAMILY SSF53067 4 106 3.37E-31 T 11-10-2018 VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 Gene3D G3DSA:3.30.420.40 96 190 5.3E-84 T 11-10-2018 VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 SUPERFAMILY SSF53067 111 219 6.22E-29 T 11-10-2018 VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 2.3E-69 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 VV93_v1c09720 ef6f023752df95fd339344d8d6d79542 233 Gene3D G3DSA:3.30.420.40 5 201 5.3E-84 T 11-10-2018 VV93_v1c28460 ee14484e30af3ebbfc532e45e0d1a817 567 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 8 558 2.0E-262 T 11-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily VV93_v1c28460 ee14484e30af3ebbfc532e45e0d1a817 567 Gene3D G3DSA:1.20.1730.10 5 328 1.6E-34 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c28460 ee14484e30af3ebbfc532e45e0d1a817 567 Gene3D G3DSA:1.20.1730.10 348 556 5.1E-27 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c28460 ee14484e30af3ebbfc532e45e0d1a817 567 Pfam PF00474 Sodium:solute symporter family 368 489 3.0E-19 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c28460 ee14484e30af3ebbfc532e45e0d1a817 567 Pfam PF00474 Sodium:solute symporter family 33 302 2.8E-33 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.367 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 3.4E-16 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Gene3D G3DSA:3.30.930.10 118 578 6.7E-197 T 11-10-2018 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 5.4E-266 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 SUPERFAMILY SSF55681 108 582 1.05E-102 T 11-10-2018 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 2.3E-105 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 SUPERFAMILY SSF55261 288 419 2.78E-48 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Gene3D G3DSA:2.40.50.140 1 106 2.7E-35 T 11-10-2018 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Pfam PF02938 GAD domain 307 406 1.5E-31 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 Gene3D G3DSA:3.30.1360.30 271 420 6.7E-197 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 SUPERFAMILY SSF50249 1 105 6.29E-34 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 2.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 2.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 2.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c19980 2ece08cf7f47efea7daed7e7b759a122 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 2.7E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c00990 757f88f5203c97f1a3a871e2bc40d859 88 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 3.6E-18 T 11-10-2018 IPR009525 Protein of unknown function DUF1145 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 Pfam PF02357 Transcription termination factor nusG 7 112 4.4E-27 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 6.8E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 6.8E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 6.8E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 SUPERFAMILY SSF50104 126 181 1.05E-19 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 Gene3D G3DSA:3.30.70.940 1 122 9.1E-48 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 Gene3D G3DSA:2.30.30.30 123 181 8.6E-26 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 26.01 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 Pfam PF00467 KOW motif 130 162 2.3E-7 T 11-10-2018 IPR005824 KOW VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 181 1.1E-70 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 SMART SM00738 6 115 3.2E-51 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 SMART SM00739 127 154 7.0E-5 T 11-10-2018 IPR005824 KOW VV93_v1c28810 98f17b9fee2d42ba618b2b0eb6663b30 182 SUPERFAMILY SSF82679 6 116 1.44E-40 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c36170 801e8c6712749beb9ae47d895f5dddd7 123 Gene3D G3DSA:1.10.287.1080 1 121 2.2E-11 T 11-10-2018 VV93_v1c36170 801e8c6712749beb9ae47d895f5dddd7 123 SUPERFAMILY SSF101386 1 102 1.57E-13 T 11-10-2018 VV93_v1c36170 801e8c6712749beb9ae47d895f5dddd7 123 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 93 3.5E-17 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Pfam PF00750 tRNA synthetases class I (R) 98 447 1.7E-162 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 SUPERFAMILY SSF47323 455 577 1.77E-35 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 28.132 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 SUPERFAMILY SSF55190 2 96 5.89E-22 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 SMART SM01016 5 87 2.2E-28 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Pfam PF05746 DALR anticodon binding domain 461 577 3.7E-36 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Gene3D G3DSA:3.40.50.620 108 454 4.8E-108 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 SMART SM00836 461 577 2.1E-41 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 3.8E-20 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 3.8E-199 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Gene3D G3DSA:3.30.1360.70 1 106 2.5E-33 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 3.6E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 3.6E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 3.6E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 304 325 3.6E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 SUPERFAMILY SSF52374 111 454 2.22E-93 T 11-10-2018 VV93_v1c09670 cdc91226a37a3415e7b64362a9e2d732 577 Gene3D G3DSA:1.10.730.10 455 577 1.0E-35 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.30.300.30 1327 1434 3.7E-24 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.40.50.12780 931 1325 4.2E-99 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 SUPERFAMILY SSF52777 673 900 8.89E-22 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1075 1086 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.30.559.10 34 216 1.9E-39 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.30.559.10 485 657 1.8E-23 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 SUPERFAMILY SSF52777 39 215 3.67E-20 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 SUPERFAMILY SSF56801 912 1427 4.19E-125 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 SUPERFAMILY SSF52777 222 475 1.22E-33 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 957 1356 2.1E-108 T 11-10-2018 IPR010071 Amino acid adenylation domain VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.30.559.30 221 481 5.1E-59 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Gene3D G3DSA:3.30.559.30 668 908 2.5E-32 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 SUPERFAMILY SSF52777 493 679 3.34E-10 T 11-10-2018 VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Pfam PF13193 AMP-binding enzyme C-terminal domain 1341 1415 3.4E-5 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Pfam PF00668 Condensation domain 518 759 2.4E-14 T 11-10-2018 IPR001242 Condensation domain VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Pfam PF00668 Condensation domain 39 468 2.9E-31 T 11-10-2018 IPR001242 Condensation domain VV93_v1c42170 45d1d05758de5af03d6cb7ce6b3bc9ef 1520 Pfam PF00501 AMP-binding enzyme 941 1332 2.7E-80 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 396 6.7E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 SUPERFAMILY SSF161098 194 382 2.22E-23 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 Gene3D G3DSA:1.10.3720.10 190 397 1.3E-31 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 Gene3D G3DSA:1.10.3720.10 79 182 1.2E-14 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 92 155 1.2E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c14610 f8cd2ceec354cd7bfb7c3845c80d4b3f 401 SUPERFAMILY SSF161098 92 160 7.03E-12 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Gene3D G3DSA:2.40.30.10 206 334 4.0E-52 T 11-10-2018 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 SUPERFAMILY SSF50465 298 393 2.19E-35 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 8.1E-231 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 7.0E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.521 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Gene3D G3DSA:2.40.30.10 338 393 5.9E-29 T 11-10-2018 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 SUPERFAMILY SSF50447 205 301 3.14E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Gene3D G3DSA:3.40.50.300 1 203 2.3E-69 T 11-10-2018 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 6.2E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.4E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 4.5E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VV93_v1c28830 34d2e8ce305ab543a684dd2789b7bbc5 394 SUPERFAMILY SSF52540 6 219 3.89E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02380 11f44bc131c18a6bec572d0c9e2c9cbf 323 SUPERFAMILY SSF103481 46 147 6.67E-13 T 11-10-2018 VV93_v1c02380 11f44bc131c18a6bec572d0c9e2c9cbf 323 Pfam PF00892 EamA-like transporter family 160 292 1.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c02380 11f44bc131c18a6bec572d0c9e2c9cbf 323 Pfam PF00892 EamA-like transporter family 13 145 2.8E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 SUPERFAMILY SSF46785 5 58 4.68E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.7E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.7E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 SMART SM00420 6 58 9.8E-19 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 3.6E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 SMART SM01134 73 233 7.8E-62 T 11-10-2018 VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 SUPERFAMILY SSF100950 75 233 2.93E-25 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 Gene3D G3DSA:1.10.10.10 1 60 6.8E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19560 24dfb39975d888a9feb9ab42f613cb88 262 Pfam PF00455 DeoR C terminal sensor domain 75 232 2.1E-48 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c29360 3403f9fd01f749119b9c7efe4d4d9de1 184 SUPERFAMILY SSF51161 4 174 1.66E-43 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c29360 3403f9fd01f749119b9c7efe4d4d9de1 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 40 6.6E-6 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c29360 3403f9fd01f749119b9c7efe4d4d9de1 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 129 1.9E-5 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c29360 3403f9fd01f749119b9c7efe4d4d9de1 184 Gene3D G3DSA:2.160.10.10 1 183 5.4E-55 T 11-10-2018 VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16780 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c22950 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16530 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16800 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16860 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c18300 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16470 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16610 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16680 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16360 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16720 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c35920 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c19380 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF00665 Integrase core domain 172 279 3.7E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Gene3D G3DSA:3.30.420.10 167 321 1.7E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16920 01bb4084474cf792dd11a0d7a6a2bf1f 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c40520 be23ee9685fdcd9802f03095a660dae7 294 Pfam PF00510 Cytochrome c oxidase subunit III 8 293 1.7E-49 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40520 be23ee9685fdcd9802f03095a660dae7 294 SUPERFAMILY SSF81452 3 294 7.72E-78 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40520 be23ee9685fdcd9802f03095a660dae7 294 Gene3D G3DSA:1.10.287.70 1 78 2.2E-18 T 11-10-2018 VV93_v1c40520 be23ee9685fdcd9802f03095a660dae7 294 Gene3D G3DSA:1.20.120.80 79 294 2.4E-62 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 Gene3D G3DSA:1.10.10.10 147 259 6.9E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 SMART SM00862 176 252 7.3E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 Pfam PF00486 Transcriptional regulatory protein, C terminal 177 252 9.4E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 SMART SM00448 29 139 3.0E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 Pfam PF00072 Response regulator receiver domain 31 139 5.4E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 SUPERFAMILY SSF52172 21 151 8.97E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 Gene3D G3DSA:3.40.50.2300 22 146 3.0E-32 T 11-10-2018 VV93_v1c21090 4b63d0cff65ef8d6f1bd93ee583c1bb9 261 SUPERFAMILY SSF46894 153 253 1.98E-28 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:1.10.287.470 168 195 2.7E-8 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Pfam PF13437 HlyD family secretion protein 195 274 2.5E-6 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:2.40.50.100 32 65 7.1E-8 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:2.40.50.100 196 230 2.7E-8 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 SUPERFAMILY SSF111369 100 157 1.23E-6 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 SUPERFAMILY SSF111369 34 87 3.79E-5 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Pfam PF13533 Biotin-lipoyl like 44 77 1.7E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:1.10.287.470 66 86 7.1E-8 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:1.10.287.470 97 161 7.1E-12 T 11-10-2018 VV93_v1c40840 4123cb94604c478b18a9f4889d386868 316 Gene3D G3DSA:2.40.30.170 231 307 2.7E-8 T 11-10-2018 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 Pfam PF00072 Response regulator receiver domain 186 303 1.2E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 SMART SM00448 184 305 2.2E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 PIRSF PIRSF002867 1 312 6.7E-104 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 Pfam PF01584 CheW-like domain 21 160 1.5E-35 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 SUPERFAMILY SSF52172 183 309 6.69E-22 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 Gene3D G3DSA:2.40.50.180 39 158 2.8E-28 T 11-10-2018 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 Gene3D G3DSA:2.30.30.40 24 152 2.8E-28 T 11-10-2018 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 Gene3D G3DSA:3.40.50.2300 182 311 1.0E-21 T 11-10-2018 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 SUPERFAMILY SSF50341 16 161 1.57E-33 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c12090 40279ae3a7f65c301d0a2cfae81c0c02 313 SMART SM00260 17 158 3.1E-30 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c18840 89406cd2677a62afd3de6317412f454b 215 Gene3D G3DSA:3.40.50.10990 21 191 9.8E-64 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c18840 89406cd2677a62afd3de6317412f454b 215 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 20 215 38.487 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c18840 89406cd2677a62afd3de6317412f454b 215 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 40 212 7.3E-62 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c18840 89406cd2677a62afd3de6317412f454b 215 SUPERFAMILY SSF142695 36 189 9.42E-54 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c18840 89406cd2677a62afd3de6317412f454b 215 Pfam PF00925 GTP cyclohydrolase II 36 188 4.2E-59 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 PIRSF PIRSF037565 1 376 4.7E-175 T 11-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 376 50.001 T 11-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 Pfam PF05175 Methyltransferase small domain 200 373 2.0E-52 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 Gene3D G3DSA:3.40.50.150 8 182 5.5E-53 T 11-10-2018 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 Pfam PF08468 Methyltransferase small domain N-terminal 49 168 2.0E-5 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 SUPERFAMILY SSF53335 193 355 2.71E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c23100 7c166e55175cf4c164c15c500e5b1a58 376 Gene3D G3DSA:3.40.50.150 186 376 4.8E-48 T 11-10-2018 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 SUPERFAMILY SSF101904 499 743 4.19E-51 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 691 2.1E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 600 637 0.0075 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 SUPERFAMILY SSF56719 33 485 5.75E-154 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Gene3D G3DSA:2.120.10.90 497 735 1.4E-14 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Gene3D G3DSA:3.30.1360.40 240 333 1.7E-178 T 11-10-2018 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Gene3D G3DSA:1.10.268.10 371 456 1.7E-178 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 34 469 1.0E-135 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 6 745 33.661 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 Gene3D G3DSA:3.90.199.10 34 483 1.7E-178 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 SMART SM00434 13 463 1.1E-227 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05300 5517cb6ea9a9e77c997207428963281a 761 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 744 0.0 T 11-10-2018 VV93_v1c31350 67bbe64b1542cf9716de3da8df9df648 330 Gene3D G3DSA:1.10.3720.10 92 308 3.8E-15 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31350 67bbe64b1542cf9716de3da8df9df648 330 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 308 1.1E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c31350 67bbe64b1542cf9716de3da8df9df648 330 SUPERFAMILY SSF161098 99 287 3.92E-19 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 Pfam PF00990 Diguanylate cyclase, GGDEF domain 229 381 1.8E-19 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 SUPERFAMILY SSF55073 233 386 1.18E-17 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 Gene3D G3DSA:3.20.20.450 397 637 1.7E-36 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 Pfam PF00563 EAL domain 430 636 3.2E-45 T 11-10-2018 IPR001633 EAL domain VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 SMART SM00052 397 639 3.3E-16 T 11-10-2018 IPR001633 EAL domain VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 SMART SM00267 216 386 1.4E-7 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 SUPERFAMILY SSF141868 428 636 1.7E-36 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 39 133 6.8E-28 T 11-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 VV93_v1c26740 2f48cef9044b34e1dacf2b216e873af9 665 Gene3D G3DSA:3.30.70.270 212 387 1.1E-21 T 11-10-2018 VV93_v1c19780 6756a8977f5c1c888d6385f70f3ec00f 402 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 27 401 2.0E-157 T 11-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain VV93_v1c19780 6756a8977f5c1c888d6385f70f3ec00f 402 SUPERFAMILY SSF52440 189 295 3.45E-40 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c19780 6756a8977f5c1c888d6385f70f3ec00f 402 SUPERFAMILY SSF56059 14 400 7.77E-88 T 11-10-2018 VV93_v1c19780 6756a8977f5c1c888d6385f70f3ec00f 402 Gene3D G3DSA:3.30.1490.330 279 360 1.5E-23 T 11-10-2018 VV93_v1c13090 fbba954e8b62a80665a17feccd0364d7 188 Gene3D G3DSA:1.10.340.30 4 188 1.9E-77 T 11-10-2018 VV93_v1c13090 fbba954e8b62a80665a17feccd0364d7 188 SUPERFAMILY SSF48150 5 184 7.85E-76 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c13090 fbba954e8b62a80665a17feccd0364d7 188 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 6 182 5.9E-70 T 11-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 VV93_v1c13090 fbba954e8b62a80665a17feccd0364d7 188 Pfam PF03352 Methyladenine glycosylase 9 183 2.5E-74 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 VV93_v1c03970 d9c45f9b0f30c9628309cda56433c916 115 SUPERFAMILY SSF110857 3 114 3.79E-33 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily VV93_v1c03970 d9c45f9b0f30c9628309cda56433c916 115 Gene3D G3DSA:3.10.490.10 4 115 2.5E-40 T 11-10-2018 VV93_v1c03970 d9c45f9b0f30c9628309cda56433c916 115 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 112 1.1E-25 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 SUPERFAMILY SSF51445 16 441 4.64E-158 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 350 358 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 TIGRFAM TIGR03356 BGL: beta-galactosidase 14 437 2.4E-188 T 11-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 408 4.6E-23 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 427 4.6E-23 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 381 4.6E-23 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 PRINTS PR00131 Glycosyl hydrolase family 1 signature 289 303 4.6E-23 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 PRINTS PR00131 Glycosyl hydrolase family 1 signature 350 358 4.6E-23 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 17 31 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 Pfam PF00232 Glycosyl hydrolase family 1 15 440 3.3E-151 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 VV93_v1c31290 0247cbb490e76baa192968f519e983bc 449 Gene3D G3DSA:3.20.20.80 9 446 2.6E-163 T 11-10-2018 VV93_v1c03210 02ed26211fba643254012fe67e499296 119 SUPERFAMILY SSF158446 4 112 1.15E-33 T 11-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VV93_v1c03210 02ed26211fba643254012fe67e499296 119 Gene3D G3DSA:1.20.1440.60 2 117 4.2E-35 T 11-10-2018 IPR036583 23S rRNA-intervening sequence superfamily VV93_v1c03210 02ed26211fba643254012fe67e499296 119 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 11 112 6.6E-32 T 11-10-2018 IPR012657 23S rRNA-intervening sequence protein VV93_v1c03210 02ed26211fba643254012fe67e499296 119 Pfam PF05635 23S rRNA-intervening sequence protein 7 108 3.3E-31 T 11-10-2018 IPR012657 23S rRNA-intervening sequence protein VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 SUPERFAMILY SSF55060 206 382 2.88E-53 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 ProSitePatterns PS00106 Galactokinase signature. 28 39 - T 11-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Pfam PF10509 Galactokinase galactose-binding signature 12 59 7.4E-21 T 11-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PIRSF PIRSF000530 1 385 3.1E-127 T 11-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 122 133 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00959 Mevalonate kinase family signature 26 50 4.3E-44 T 11-10-2018 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00959 Mevalonate kinase family signature 120 142 4.3E-44 T 11-10-2018 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00959 Mevalonate kinase family signature 329 346 4.3E-44 T 11-10-2018 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00959 Mevalonate kinase family signature 163 182 4.3E-44 T 11-10-2018 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Gene3D G3DSA:3.30.70.890 203 358 4.6E-133 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 TIGRFAM TIGR00131 gal_kin: galactokinase 6 381 3.5E-148 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00473 Galactokinase signature 93 104 9.4E-30 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00473 Galactokinase signature 264 278 9.4E-30 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00473 Galactokinase signature 113 131 9.4E-30 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 PRINTS PR00473 Galactokinase signature 28 46 9.4E-30 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Gene3D G3DSA:3.30.230.10 23 202 4.6E-133 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Hamap MF_00246 Galactokinase [galK]. 26 382 44.266 T 11-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 SUPERFAMILY SSF54211 2 204 8.35E-64 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Pfam PF00288 GHMP kinases N terminal domain 115 181 7.9E-11 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VV93_v1c23550 277502474f956d2c3295cb51ad6b2b15 386 Pfam PF08544 GHMP kinases C terminal 280 361 7.5E-11 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 SMART SM00487 17 310 0.0069 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 SMART SM00491 477 606 1.4E-45 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 Gene3D G3DSA:3.40.50.300 19 287 4.8E-51 T 11-10-2018 VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 Pfam PF13307 Helicase C-terminal domain 462 619 4.7E-35 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 SUPERFAMILY SSF52540 14 237 1.27E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 Gene3D G3DSA:3.40.50.300 446 636 4.1E-37 T 11-10-2018 VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 Pfam PF04851 Type III restriction enzyme, res subunit 19 251 7.8E-6 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c09710 583c43b1817e50781fe716bf10cf3a03 639 SUPERFAMILY SSF52540 41 600 3.32E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Gene3D G3DSA:3.40.50.360 71 233 5.6E-47 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Pfam PF00667 FAD binding domain 250 441 1.8E-26 T 11-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Pfam PF00258 Flavodoxin 82 206 6.0E-28 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PIRSF PIRSF000207 13 616 8.2E-269 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 SUPERFAMILY SSF52343 461 616 7.07E-52 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Gene3D G3DSA:1.20.990.10 297 401 5.0E-71 T 11-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 SUPERFAMILY SSF52218 79 226 1.56E-46 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Pfam PF00175 Oxidoreductase NAD-binding domain 474 580 2.2E-18 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Gene3D G3DSA:3.40.50.80 462 616 8.8E-60 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 21 616 3.9E-254 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 511 522 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 542 558 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 498 507 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 565 573 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 473 492 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 287 297 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 403 410 2.5E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00369 Flavodoxin signature 81 94 6.7E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00369 Flavodoxin signature 185 204 6.7E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00369 Flavodoxin signature 129 140 6.7E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 PRINTS PR00369 Flavodoxin signature 161 171 6.7E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 SUPERFAMILY SSF63380 247 462 1.88E-60 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Gene3D G3DSA:2.40.30.10 249 456 5.0E-71 T 11-10-2018 VV93_v1c26970 44f1761d1f258e52e074305fdc5b8158 616 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 13 616 49.958 T 11-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c37350 e79d7d2ad9ae2adb9c76894fff42064e 543 SUPERFAMILY SSF52540 1 323 2.26E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37350 e79d7d2ad9ae2adb9c76894fff42064e 543 Pfam PF11398 Protein of unknown function (DUF2813) 1 369 2.8E-152 T 11-10-2018 IPR022602 Protein of unknown function DUF2813 VV93_v1c37350 e79d7d2ad9ae2adb9c76894fff42064e 543 Gene3D G3DSA:3.40.50.300 1 336 6.1E-17 T 11-10-2018 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 SUPERFAMILY SSF50249 9 69 7.42E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Gene3D G3DSA:3.40.1350.30 135 271 7.8E-117 T 11-10-2018 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Gene3D G3DSA:3.40.50.150 89 433 7.8E-117 T 11-10-2018 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 SUPERFAMILY SSF53335 76 438 7.13E-85 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 25 431 8.3E-131 T 11-10-2018 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 97 437 4.7E-32 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Gene3D G3DSA:2.40.50.140 1 88 9.2E-28 T 11-10-2018 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 370 400 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 19 438 63.304 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 Pfam PF01938 TRAM domain 17 68 3.4E-12 T 11-10-2018 IPR002792 TRAM domain VV93_v1c25310 4d4caefddc715c5b1fdc7aa8131d792f 438 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 421 431 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 PIRSF PIRSF036431 1 595 5.6E-205 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Pfam PF02743 Cache domain 34 271 8.2E-14 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 SMART SM00387 483 592 5.6E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 440 1.0E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Gene3D G3DSA:1.10.287.130 348 435 6.3E-20 T 11-10-2018 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 589 6.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Gene3D G3DSA:3.30.450.20 41 279 8.8E-84 T 11-10-2018 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 SUPERFAMILY SSF103190 48 187 9.42E-31 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 SUPERFAMILY SSF47384 367 440 2.94E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 SUPERFAMILY SSF55874 440 590 1.22E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Gene3D G3DSA:3.30.450.20 54 175 8.8E-84 T 11-10-2018 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 Gene3D G3DSA:3.30.565.10 444 594 1.0E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 551 9.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 537 9.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 570 9.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 589 9.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10220 1f07fa34a56418a9ee1a4d2322a83235 595 SMART SM00388 372 440 2.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1295 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF109736 155 220 7.59E-22 T 11-10-2018 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF56042 825 1035 2.84E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1297 21.344 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1041 1294 5.6E-105 T 11-10-2018 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF55326 221 428 1.15E-65 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF56042 432 615 7.03E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:3.40.50.880 983 1297 1.1E-138 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:3.30.1330.10 615 808 1.8E-25 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:1.10.8.750 153 213 6.7E-28 T 11-10-2018 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:3.90.650.10 420 606 3.5E-59 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF52317 1037 1295 9.35E-98 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:3.30.1330.10 214 419 1.9E-41 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SMART SM01211 1041 1296 2.9E-156 T 11-10-2018 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF82697 1 151 4.29E-51 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 SUPERFAMILY SSF55326 620 816 7.33E-69 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 967 1.1E-13 T 11-10-2018 IPR010918 PurM-like, C-terminal domain VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 432 589 2.8E-28 T 11-10-2018 IPR010918 PurM-like, C-terminal domain VV93_v1c07870 cef0561e54380ef9d4a3e9b72a424805 1297 Gene3D G3DSA:3.90.650.10 809 982 2.0E-30 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 Pfam PF06725 3D domain 272 348 1.9E-20 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 SUPERFAMILY SSF50685 20 350 5.93E-100 T 11-10-2018 IPR036908 RlpA-like domain superfamily VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 Gene3D G3DSA:2.40.40.10 51 348 3.9E-134 T 11-10-2018 IPR036908 RlpA-like domain superfamily VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 Pfam PF03562 MltA specific insert domain 108 252 7.8E-36 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 SMART SM00925 119 252 1.9E-62 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 VV93_v1c23240 5a682558fb84685f62f19e98fbdc7f75 367 Gene3D G3DSA:2.40.240.50 119 257 3.9E-134 T 11-10-2018 VV93_v1c41920 a4201e2fdb3bda3fb36d1b3b0176bc64 210 SUPERFAMILY SSF53474 3 187 2.23E-15 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41920 a4201e2fdb3bda3fb36d1b3b0176bc64 210 Pfam PF07819 PGAP1-like protein 55 161 4.3E-6 T 11-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 Pfam PF06628 Catalase-related immune-responsive 442 500 4.6E-18 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 38 61 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 122 139 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 336 362 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 141 159 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 304 331 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PRINTS PR00067 Catalase signature 101 119 4.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 ProSitePatterns PS00438 Catalase proximal active site signature. 61 77 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 Gene3D G3DSA:2.40.180.10 21 514 1.4E-203 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 PIRSF PIRSF038928 15 507 1.5E-185 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 SMART SM01060 25 417 1.6E-240 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 SUPERFAMILY SSF56634 21 508 1.96E-188 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 Pfam PF00199 Catalase 25 390 5.4E-166 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c32820 2a267285bd61d89b5b8bbba7ba222dad 514 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 349 357 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 VV93_v1c39890 eb852b6f1fbacf262810f7a58f55604f 534 Pfam PF01039 Carboxyl transferase domain 48 523 4.1E-143 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 VV93_v1c39890 eb852b6f1fbacf262810f7a58f55604f 534 Gene3D G3DSA:3.90.226.10 1 268 7.4E-92 T 11-10-2018 VV93_v1c39890 eb852b6f1fbacf262810f7a58f55604f 534 SUPERFAMILY SSF52096 25 267 4.83E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c39890 eb852b6f1fbacf262810f7a58f55604f 534 Gene3D G3DSA:3.90.226.10 273 534 1.7E-97 T 11-10-2018 VV93_v1c39890 eb852b6f1fbacf262810f7a58f55604f 534 SUPERFAMILY SSF52096 237 517 7.69E-82 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 SMART SM00342 201 285 8.2E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 SUPERFAMILY SSF46689 240 287 2.58E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 Gene3D G3DSA:1.10.10.60 181 289 1.6E-28 T 11-10-2018 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 Gene3D G3DSA:2.60.120.10 3 91 1.0E-10 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 SUPERFAMILY SSF46689 186 235 7.89E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 269 4.0E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 269 285 4.0E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 SUPERFAMILY SSF51215 27 171 9.81E-16 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 Pfam PF12833 Helix-turn-helix domain 207 286 2.9E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31430 2f907bcdc6e44fe8248c7576bb5969b7 289 Pfam PF02311 AraC-like ligand binding domain 22 164 2.6E-8 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 267 6.8E-86 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 260 1.5E-19 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 Gene3D G3DSA:3.60.10.10 1 268 2.8E-78 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 198 214 - T 11-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 267 1.4E-98 T 11-10-2018 VV93_v1c20440 86b435b890f0fd49683b85c7c399dfaf 268 SUPERFAMILY SSF56219 1 268 6.81E-85 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 Pfam PF00266 Aminotransferase class-V 8 352 1.2E-65 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 191 210 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 SUPERFAMILY SSF53383 8 362 1.16E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 8 362 6.9E-164 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 PIRSF PIRSF000525 2 364 5.0E-155 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 Gene3D G3DSA:3.40.640.10 21 261 9.0E-92 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 Gene3D G3DSA:3.90.1150.10 262 364 4.6E-41 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c13630 c201e01cf666b3e37bdc65666493e204 364 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 6 363 52.349 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 SMART SM00382 284 479 2.1 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 SMART SM00382 34 221 3.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 SUPERFAMILY SSF52540 244 490 1.16E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 Pfam PF00005 ABC transporter 25 174 4.6E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 Pfam PF00005 ABC transporter 276 430 2.3E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 Gene3D G3DSA:3.40.50.300 258 498 6.2E-39 T 11-10-2018 VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 SUPERFAMILY SSF52540 8 229 1.11E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c31590 b768a4f2506bc58c3ed9fd24fddd1ae2 502 Gene3D G3DSA:3.40.50.300 1 250 2.2E-54 T 11-10-2018 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 569 1.8E-245 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 2.2E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 SUPERFAMILY SSF55681 10 478 5.9E-97 T 11-10-2018 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Gene3D G3DSA:3.30.930.10 11 465 2.7E-234 T 11-10-2018 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 SUPERFAMILY SSF52954 463 570 8.61E-34 T 11-10-2018 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Gene3D G3DSA:3.40.50.800 4 554 2.7E-234 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.6E-16 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.6E-16 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.6E-16 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.6E-16 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 PIRSF PIRSF001535 1 571 2.7E-266 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 6.0E-41 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 41.002 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Gene3D G3DSA:3.90.960.10 240 389 2.7E-234 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 SUPERFAMILY SSF55826 218 390 1.28E-30 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c22900 21c2cb852a67fbcf416256720349d9d7 571 Pfam PF03129 Anticodon binding domain 475 568 6.2E-23 T 11-10-2018 IPR004154 Anticodon-binding VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 SUPERFAMILY SSF58104 314 621 1.7E-73 T 11-10-2018 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Gene3D G3DSA:3.30.450.20 62 173 2.0E-64 T 11-10-2018 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 SMART SM00304 292 346 1.4E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 423 589 1.5E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Pfam PF02743 Cache domain 38 254 2.8E-29 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Gene3D G3DSA:3.30.450.20 49 266 2.0E-64 T 11-10-2018 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Pfam PF00672 HAMP domain 293 343 6.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 SUPERFAMILY SSF103190 98 184 1.18E-18 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 Gene3D G3DSA:1.10.287.950 291 623 4.4E-68 T 11-10-2018 VV93_v1c20940 abfe4da4b83874d8c6d66af033b049f2 623 SMART SM00283 361 622 1.7E-72 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c19730 804f59fee9c03764103b8a3d29ee2bd2 316 SUPERFAMILY SSF110849 42 89 3.66E-7 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VV93_v1c25440 07314a9d2712ad01f4f3f5a320f88053 325 Gene3D G3DSA:2.50.20.10 24 208 6.3E-51 T 11-10-2018 VV93_v1c25440 07314a9d2712ad01f4f3f5a320f88053 325 Pfam PF03888 MucB/RseB N-terminal domain 26 195 2.1E-57 T 11-10-2018 IPR033434 MucB/RseB, N-terminal VV93_v1c25440 07314a9d2712ad01f4f3f5a320f88053 325 PIRSF PIRSF005427 1 318 2.4E-81 T 11-10-2018 IPR005588 MucB/RseB VV93_v1c25440 07314a9d2712ad01f4f3f5a320f88053 325 Gene3D G3DSA:3.30.200.100 217 316 4.7E-27 T 11-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily VV93_v1c25440 07314a9d2712ad01f4f3f5a320f88053 325 Pfam PF17188 MucB/RseB C-terminal domain 217 311 2.6E-27 T 11-10-2018 IPR033436 MucB/RseB, C-terminal VV93_v1c29180 c8758809de7731043f7210fd512a3da1 397 Pfam PF07690 Major Facilitator Superfamily 16 352 5.6E-48 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c29180 c8758809de7731043f7210fd512a3da1 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 81 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VV93_v1c29180 c8758809de7731043f7210fd512a3da1 397 SUPERFAMILY SSF103473 9 383 3.79E-60 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c29180 c8758809de7731043f7210fd512a3da1 397 Gene3D G3DSA:1.20.1720.10 12 385 5.9E-90 T 11-10-2018 VV93_v1c29180 c8758809de7731043f7210fd512a3da1 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 359 5.3E-69 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 SUPERFAMILY SSF90123 7 325 2.62E-70 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 SUPERFAMILY SSF52540 336 572 2.92E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 SMART SM00382 361 547 8.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 Pfam PF00005 ABC transporter 353 500 6.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 Pfam PF00664 ABC transporter transmembrane region 21 291 1.8E-45 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 Gene3D G3DSA:3.40.50.300 331 581 3.4E-72 T 11-10-2018 VV93_v1c18100 7c4920d4f2d7aee072afa102464828cc 581 Gene3D G3DSA:1.20.1560.10 6 318 3.6E-73 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 SUPERFAMILY SSF52833 3 84 2.32E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 Gene3D G3DSA:3.40.30.10 1 89 4.6E-26 T 11-10-2018 VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 5.4E-33 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 Pfam PF00462 Glutaredoxin 4 63 7.1E-22 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 PRINTS PR00160 Glutaredoxin signature 60 73 3.4E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 PRINTS PR00160 Glutaredoxin signature 46 59 3.4E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c44410 b007148a00fdedf07de7606d695e472b 89 PRINTS PR00160 Glutaredoxin signature 4 22 3.4E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c37770 01b56923edc33ef40ab7a1ace7cbb668 103 SUPERFAMILY SSF55159 3 99 4.84E-27 T 11-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 VV93_v1c37770 01b56923edc33ef40ab7a1ace7cbb668 103 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 3 103 1.1E-38 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 VV93_v1c37770 01b56923edc33ef40ab7a1ace7cbb668 103 Pfam PF01253 Translation initiation factor SUI1 27 96 1.9E-19 T 11-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 VV93_v1c37770 01b56923edc33ef40ab7a1ace7cbb668 103 Gene3D G3DSA:3.30.780.10 23 103 8.5E-34 T 11-10-2018 VV93_v1c37770 01b56923edc33ef40ab7a1ace7cbb668 103 PIRSF PIRSF037511 1 103 5.2E-33 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 VV93_v1c16120 e8031c92c6a694451e537b5fb0de8ced 196 Pfam PF03942 DTW domain 2 166 3.5E-33 T 11-10-2018 IPR005636 DTW VV93_v1c16120 e8031c92c6a694451e537b5fb0de8ced 196 SMART SM01144 1 172 5.2E-40 T 11-10-2018 IPR005636 DTW VV93_v1c31510 4ab9d7d27dc25c79096d159a84b41a71 305 SUPERFAMILY SSF53474 126 250 3.2E-7 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c31510 4ab9d7d27dc25c79096d159a84b41a71 305 Gene3D G3DSA:3.40.50.1820 127 259 1.1E-5 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c10450 ce75288484d3bc69757f6d515bc785e8 196 SUPERFAMILY SSF48498 87 193 1.78E-20 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c10450 ce75288484d3bc69757f6d515bc785e8 196 Pfam PF13305 WHG domain 92 172 9.7E-13 T 11-10-2018 IPR025996 WHG domain VV93_v1c10450 ce75288484d3bc69757f6d515bc785e8 196 Gene3D G3DSA:1.10.357.10 1 192 5.8E-41 T 11-10-2018 VV93_v1c10450 ce75288484d3bc69757f6d515bc785e8 196 SUPERFAMILY SSF46689 2 77 1.75E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c24490 1e3b0098971ff9f1eb1913edb2990131 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 306 7.5E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24490 1e3b0098971ff9f1eb1913edb2990131 341 SUPERFAMILY SSF161098 96 287 1.1E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24490 1e3b0098971ff9f1eb1913edb2990131 341 Gene3D G3DSA:1.10.3720.10 90 299 2.7E-17 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24930 94ed2996efc9d53e5d5807a6cde29b16 202 Gene3D G3DSA:3.40.50.300 1 202 1.4E-67 T 11-10-2018 VV93_v1c24930 94ed2996efc9d53e5d5807a6cde29b16 202 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 197 27.877 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VV93_v1c24930 94ed2996efc9d53e5d5807a6cde29b16 202 Pfam PF01121 Dephospho-CoA kinase 3 181 4.7E-77 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VV93_v1c24930 94ed2996efc9d53e5d5807a6cde29b16 202 SUPERFAMILY SSF52540 1 193 3.33E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24930 94ed2996efc9d53e5d5807a6cde29b16 202 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 188 1.3E-68 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Pfam PF00271 Helicase conserved C-terminal domain 232 340 1.3E-29 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 550 41.641 T 11-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Pfam PF03880 DbpA RNA binding domain 478 545 9.5E-17 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 SMART SM00487 25 223 2.6E-60 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Pfam PF00270 DEAD/DEAH box helicase 30 195 1.0E-48 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 SMART SM00490 259 340 2.2E-34 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 SUPERFAMILY SSF52540 74 361 3.84E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Gene3D G3DSA:3.30.70.330 479 548 9.8E-11 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Gene3D G3DSA:3.40.50.300 1 211 2.1E-73 T 11-10-2018 VV93_v1c36580 974b4ff1e28e0d448a8b95490fd55684 637 Gene3D G3DSA:3.40.50.300 215 434 3.5E-52 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 569 771 1.6E-99 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Gene3D G3DSA:1.10.8.60 490 583 3.4E-32 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 351 488 4.2E-17 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 SUPERFAMILY SSF52540 312 586 1.27E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 196 3.2E-41 T 11-10-2018 IPR003111 Lon, substrate-binding domain VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Gene3D G3DSA:3.30.230.10 584 771 5.2E-86 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 675 683 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PIRSF PIRSF001174 1 774 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 SMART SM00464 10 201 4.9E-76 T 11-10-2018 IPR003111 Lon, substrate-binding domain VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 SMART SM00382 347 491 1.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 594 610 6.0E-56 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 702 721 6.0E-56 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 355 374 6.0E-56 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 672 691 6.0E-56 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 725 743 6.0E-56 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Hamap MF_01973 Lon protease [lon]. 11 771 72.185 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 SUPERFAMILY SSF88697 10 200 2.49E-48 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 SUPERFAMILY SSF54211 594 769 1.82E-59 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Gene3D G3DSA:2.30.130.40 1 116 1.5E-35 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Gene3D G3DSA:3.40.50.300 312 489 9.7E-61 T 11-10-2018 VV93_v1c10270 d6f79399b224b6a710a0261a4a1ce652 783 Gene3D G3DSA:1.20.58.1480 119 244 4.9E-45 T 11-10-2018 VV93_v1c09790 6f941cf8ecd23e71c31a095abc75e1bf 270 PIRSF PIRSF003092 1 270 4.2E-94 T 11-10-2018 IPR025501 ATP binding protein MinD VV93_v1c09790 6f941cf8ecd23e71c31a095abc75e1bf 270 SUPERFAMILY SSF52540 1 268 1.01E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09790 6f941cf8ecd23e71c31a095abc75e1bf 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.5E-109 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 VV93_v1c09790 6f941cf8ecd23e71c31a095abc75e1bf 270 Pfam PF13614 AAA domain 3 159 8.4E-20 T 11-10-2018 IPR025669 AAA domain VV93_v1c09790 6f941cf8ecd23e71c31a095abc75e1bf 270 Gene3D G3DSA:3.40.50.300 1 260 2.1E-72 T 11-10-2018 VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 551 2.7E-171 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 507 1.3E-17 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 PIRSF PIRSF003128 1 554 1.2E-160 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 SUPERFAMILY SSF52540 1 510 9.7E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 Gene3D G3DSA:3.40.50.300 1 251 4.3E-46 T 11-10-2018 VV93_v1c07630 f85b5261416901e1160363a1b9715a2b 554 Gene3D G3DSA:3.40.50.300 270 553 2.2E-51 T 11-10-2018 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 3.9E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 57 6.2E-10 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 SMART SM00138 8 272 3.0E-133 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 SUPERFAMILY SSF53335 76 269 6.0E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 269 1.8E-68 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 Gene3D G3DSA:3.40.50.150 75 274 6.8E-60 T 11-10-2018 VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 Gene3D G3DSA:1.10.155.10 1 74 8.1E-11 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily VV93_v1c08870 71ee03f0f4bf779a4bb982b57aedc63d 275 SUPERFAMILY SSF47757 3 75 1.27E-14 T 11-10-2018 VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 SUPERFAMILY SSF51161 22 202 7.35E-52 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 Gene3D G3DSA:2.160.10.10 18 204 3.4E-68 T 11-10-2018 VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 Pfam PF12464 Maltose acetyltransferase 26 68 3.8E-12 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 SMART SM01266 24 77 2.4E-13 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 5.4E-10 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c45230 e0101f0684f8784f5d41e41602cb908b 206 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 157 185 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 Gene3D G3DSA:3.40.190.10 93 254 1.2E-37 T 11-10-2018 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 Pfam PF03466 LysR substrate binding domain 88 274 7.1E-20 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 Gene3D G3DSA:3.40.190.10 159 249 1.2E-37 T 11-10-2018 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 SUPERFAMILY SSF53850 88 277 8.14E-20 T 11-10-2018 VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 Gene3D G3DSA:1.10.10.10 1 90 2.9E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c42570 e38898acb8d991dee940d285d23564d8 283 SUPERFAMILY SSF46785 1 87 1.25E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 Pfam PF01795 MraW methylase family 5 315 4.7E-111 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 Gene3D G3DSA:1.10.150.170 112 218 2.3E-101 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 SUPERFAMILY SSF53335 7 316 2.15E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 315 1.4E-119 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 Gene3D G3DSA:3.40.50.150 10 315 2.3E-101 T 11-10-2018 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 316 37.968 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 SUPERFAMILY SSF81799 113 216 7.98E-31 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 VV93_v1c05490 90d0bbb10b4f04564c4576d4c99cf46e 316 PIRSF PIRSF004486 1 316 6.0E-102 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 PIRSF PIRSF000477 2 273 5.3E-103 T 11-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 23 271 1.6E-124 T 11-10-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 Gene3D G3DSA:3.40.50.1580 2 274 4.7E-101 T 11-10-2018 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 SUPERFAMILY SSF53167 4 272 3.62E-81 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 23 270 1.1E-96 T 11-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 Pfam PF01048 Phosphorylase superfamily 23 270 1.6E-41 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c31890 7209e4cd42190675f01572bc78eeba66 277 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 76 117 - T 11-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 VV93_v1c25430 2922fcc59715036b038ea790a86694b2 156 PIRSF PIRSF004923 1 156 2.7E-38 T 11-10-2018 IPR026268 Protein RseC VV93_v1c25430 2922fcc59715036b038ea790a86694b2 156 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 19 149 4.6E-31 T 11-10-2018 VV93_v1c27840 f4f72f905f31472d7089ca39159df1cf 1102 SUPERFAMILY SSF56219 554 944 5.44E-25 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c27840 f4f72f905f31472d7089ca39159df1cf 1102 Gene3D G3DSA:3.60.10.10 575 945 2.5E-17 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c27840 f4f72f905f31472d7089ca39159df1cf 1102 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 583 938 1.2E-5 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c43700 3fc013a57d9939f943ca030ec08bab45 105 Gene3D G3DSA:2.60.120.10 15 105 4.0E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c43700 3fc013a57d9939f943ca030ec08bab45 105 SUPERFAMILY SSF51182 4 104 2.7E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c43700 3fc013a57d9939f943ca030ec08bab45 105 Pfam PF07883 Cupin domain 46 103 2.0E-8 T 11-10-2018 IPR013096 Cupin 2, conserved barrel VV93_v1c15620 e92f0c5d37c2cd3d4e3f54cbe7491bd0 206 SUPERFAMILY SSF46626 21 202 2.81E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15620 e92f0c5d37c2cd3d4e3f54cbe7491bd0 206 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 9 187 1.1E-80 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO VV93_v1c15620 e92f0c5d37c2cd3d4e3f54cbe7491bd0 206 Gene3D G3DSA:1.10.760.10 46 206 4.8E-72 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15620 e92f0c5d37c2cd3d4e3f54cbe7491bd0 206 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 9 186 2.4E-81 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 347 370 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 53 71 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 25 49 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 454 477 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 401 425 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 PRINTS PR00702 Acriflavin resistance protein family signature 479 502 5.8E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82693 55 150 3.31E-23 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.70.1440 672 873 1.5E-256 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82714 729 804 1.7E-8 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.2090.10 194 286 1.5E-256 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.70.1430 573 671 1.5E-256 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:1.20.1640.10 25 521 1.5E-256 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.70.1320 151 343 1.5E-256 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82866 810 1032 4.05E-47 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:1.20.1640.10 522 1025 1.5E-256 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82866 307 506 5.49E-34 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82714 199 282 8.37E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.2090.10 723 813 1.5E-256 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 SUPERFAMILY SSF82693 151 338 2.33E-18 T 11-10-2018 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Pfam PF00873 AcrB/AcrD/AcrF family 19 1029 2.1E-171 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c13080 a1785d6fe0b3eefb70ea22d265b49792 1035 Gene3D G3DSA:3.30.70.1430 55 821 1.5E-256 T 11-10-2018 VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 164 297 3.2E-44 T 11-10-2018 IPR012660 Thioesterase, putative VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 Gene3D G3DSA:3.40.630.30 3 145 6.4E-28 T 11-10-2018 VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 Pfam PF00583 Acetyltransferase (GNAT) family 34 122 8.7E-11 T 11-10-2018 IPR000182 GNAT domain VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 SUPERFAMILY SSF55729 2 148 5.23E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 157 296 2.8E-52 T 11-10-2018 IPR012660 Thioesterase, putative VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 SUPERFAMILY SSF54637 154 296 7.07E-40 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c01900 948b78350db72dec2c4af9728548af9a 308 Gene3D G3DSA:3.10.129.10 147 298 5.6E-46 T 11-10-2018 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 212 231 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 173 196 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 15 32 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 238 257 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 108 128 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 88 105 2.3E-59 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 Gene3D G3DSA:3.40.50.720 2 261 1.5E-72 T 11-10-2018 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 11 261 3.6E-111 T 11-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 259 2.1E-55 T 11-10-2018 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c42190 1919692942886fd57dbd07e275697942 262 SUPERFAMILY SSF51735 8 260 1.1E-68 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 SMART SM00563 451 567 2.9E-32 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 Pfam PF01553 Acyltransferase 436 564 8.7E-26 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 Pfam PF07690 Major Facilitator Superfamily 47 380 1.7E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 SUPERFAMILY SSF69593 372 617 3.27E-33 T 11-10-2018 VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 SUPERFAMILY SSF103473 40 423 2.75E-24 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c41910 4e0bc07212c7bc66b7a54642bf701be5 623 Gene3D G3DSA:1.20.1250.20 6 416 1.9E-24 T 11-10-2018 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 SUPERFAMILY SSF52540 4 580 8.44E-219 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 345 356 - T 11-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 Gene3D G3DSA:3.10.410.10 469 558 6.6E-32 T 11-10-2018 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 Gene3D G3DSA:3.30.1510.10 129 264 1.5E-188 T 11-10-2018 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 Pfam PF01268 Formate--tetrahydrofolate ligase 3 581 1.1E-240 T 11-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 Gene3D G3DSA:3.40.50.300 4 454 1.5E-188 T 11-10-2018 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 582 42.734 T 11-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VV93_v1c37180 077540a251e0f09b471df07d7cb14f49 582 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 103 113 - T 11-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VV93_v1c00840 9d2adcc16012999036b37bf85ba29f61 156 SUPERFAMILY SSF88697 1 148 1.56E-60 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c00840 9d2adcc16012999036b37bf85ba29f61 156 Pfam PF01878 EVE domain 2 148 1.1E-55 T 11-10-2018 IPR002740 EVE domain VV93_v1c00840 9d2adcc16012999036b37bf85ba29f61 156 Gene3D G3DSA:3.10.590.10 1 153 1.7E-65 T 11-10-2018 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.0E-48 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 151 7.2E-64 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 1.1E-163 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 SUPERFAMILY SSF52096 5 318 3.83E-104 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.427 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c22600 8d437094930fbca336600d3432fa0ca5 319 Gene3D G3DSA:3.90.226.10 2 318 1.5E-119 T 11-10-2018 VV93_v1c09660 9f2ce4805bf1dce668f3b122d06ca71c 142 Gene3D G3DSA:3.30.428.10 1 142 9.5E-44 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c09660 9f2ce4805bf1dce668f3b122d06ca71c 142 SUPERFAMILY SSF54197 3 133 2.34E-34 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c09660 9f2ce4805bf1dce668f3b122d06ca71c 142 Pfam PF01230 HIT domain 11 99 2.4E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c09660 9f2ce4805bf1dce668f3b122d06ca71c 142 PIRSF PIRSF000714 2 141 7.4E-54 T 11-10-2018 IPR026026 Histidine triad hydrolase, Hint-type VV93_v1c43280 558e3c6bd9428f30e4869de7b48c6984 264 SUPERFAMILY SSF46689 212 260 3.58E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c43280 558e3c6bd9428f30e4869de7b48c6984 264 SMART SM00342 177 259 1.3E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c43280 558e3c6bd9428f30e4869de7b48c6984 264 Pfam PF12833 Helix-turn-helix domain 184 260 9.4E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c43280 558e3c6bd9428f30e4869de7b48c6984 264 Gene3D G3DSA:1.10.10.60 158 262 5.8E-24 T 11-10-2018 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 92 106 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 SUPERFAMILY SSF55120 55 233 2.24E-44 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 Gene3D G3DSA:3.30.70.1560 121 220 1.0E-39 T 11-10-2018 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 61 231 9.8E-59 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 Pfam PF00849 RNA pseudouridylate synthase 57 201 4.9E-16 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c20360 cbc081a555c7088149aa859047bbc95d 234 Gene3D G3DSA:3.30.70.580 45 120 8.8E-27 T 11-10-2018 VV93_v1c25560 7b1ed4ca84ac9637c21b9fec3b168965 103 Gene3D G3DSA:1.10.20.30 1 47 7.7E-20 T 11-10-2018 VV93_v1c25560 7b1ed4ca84ac9637c21b9fec3b168965 103 Pfam PF05164 Cell division protein ZapA 6 89 3.8E-19 T 11-10-2018 IPR007838 Cell division protein ZapA-like VV93_v1c25560 7b1ed4ca84ac9637c21b9fec3b168965 103 Gene3D G3DSA:1.20.5.50 53 102 2.7E-5 T 11-10-2018 VV93_v1c25560 7b1ed4ca84ac9637c21b9fec3b168965 103 SUPERFAMILY SSF102829 6 94 6.28E-23 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 Gene3D G3DSA:3.30.9.50 80 266 9.4E-99 T 11-10-2018 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 9.5E-19 T 11-10-2018 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 9.5E-19 T 11-10-2018 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 9.5E-19 T 11-10-2018 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 9.5E-19 T 11-10-2018 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 Gene3D G3DSA:3.50.50.60 5 328 9.4E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 Pfam PF01494 FAD binding domain 151 309 7.2E-20 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 381 1.5E-112 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VV93_v1c08550 6308f373ae79b2f4ed3bb59b53b9a145 382 SUPERFAMILY SSF51905 3 375 3.18E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 Gene3D G3DSA:3.40.50.720 129 462 1.4E-115 T 11-10-2018 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 SUPERFAMILY SSF51735 128 304 5.22E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 SMART SM00846 127 288 1.8E-52 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 129 462 1.2E-113 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 128 238 1.2E-21 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 246 259 1.5E-17 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 282 300 1.5E-17 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 365 382 1.5E-17 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 309 325 1.5E-17 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 293 450 4.9E-47 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 SUPERFAMILY SSF55347 288 451 9.35E-55 T 11-10-2018 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 286 293 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c41570 bdf1881f9bbc8624a161415fc3920a4d 478 Gene3D G3DSA:3.30.360.10 287 452 1.4E-115 T 11-10-2018 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 222 234 2.0E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 72 87 2.0E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 129 143 2.0E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 Pfam PF00089 Trypsin 41 272 4.2E-59 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 SMART SM00020 40 272 1.2E-76 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 SUPERFAMILY SSF50494 9 277 1.13E-71 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 82 87 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 Gene3D G3DSA:2.60.40.10 278 377 2.8E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 Pfam PF07610 Protein of unknown function (DUF1573) 290 364 1.1E-4 T 11-10-2018 IPR011467 Protein of unknown function DUF1573 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 Gene3D G3DSA:2.40.10.10 33 277 1.4E-69 T 11-10-2018 VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 522 541 9.2E-5 T 11-10-2018 IPR020008 GlyGly-CTERM domain VV93_v1c17140 0137a4c45da9cba231bc1a6ebb464316 543 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 223 234 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 77 99 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 PIRSF PIRSF002741 3 525 8.1E-90 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 Gene3D G3DSA:3.10.105.10 268 506 2.5E-168 T 11-10-2018 VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 447 3.9E-87 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 Gene3D G3DSA:3.90.76.10 60 167 2.5E-168 T 11-10-2018 VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 SUPERFAMILY SSF53850 26 534 8.31E-117 T 11-10-2018 VV93_v1c31330 da0d3e6b30b53f1db2583a7e688ec0c4 545 Gene3D G3DSA:3.40.190.10 44 529 2.5E-168 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 SMART SM01097 3 133 2.1E-93 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 2.2E-149 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.871 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 6.3E-53 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 Gene3D G3DSA:3.50.30.20 2 151 4.0E-62 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.5E-5 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.5E-5 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.5E-5 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 SUPERFAMILY SSF52317 153 377 8.41E-64 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 Pfam PF00117 Glutamine amidotransferase class-I 197 372 3.9E-47 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 Gene3D G3DSA:3.40.50.880 152 378 2.1E-76 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 SUPERFAMILY SSF52021 4 142 9.68E-58 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 4.8E-11 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 4.8E-11 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 4.8E-11 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 7.1E-40 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 7.1E-40 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 7.1E-40 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 7.1E-40 T 11-10-2018 VV93_v1c05670 3fb8ff16d4cceb550d45d555bf96cba3 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 7.1E-40 T 11-10-2018 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.6E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.6E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.6E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 Gene3D G3DSA:3.40.190.10 108 305 1.3E-47 T 11-10-2018 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 Pfam PF03466 LysR substrate binding domain 96 308 1.1E-33 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 SUPERFAMILY SSF46785 15 118 4.83E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 Gene3D G3DSA:1.10.10.10 12 98 5.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 72 7.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 Gene3D G3DSA:3.40.190.10 168 279 1.3E-47 T 11-10-2018 VV93_v1c44450 a42b658289c1b89ef587672a6024b021 311 SUPERFAMILY SSF53850 96 309 2.17E-33 T 11-10-2018 VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 452 1.1E-204 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Pfam PF12804 MobA-like NTP transferase domain 5 122 1.3E-22 T 11-10-2018 IPR025877 MobA-like NTP transferase VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Gene3D G3DSA:3.90.550.10 1 224 5.2E-68 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.619 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Gene3D G3DSA:2.160.10.10 225 453 2.2E-70 T 11-10-2018 VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 SUPERFAMILY SSF51161 252 434 3.54E-51 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.7E-7 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 268 296 4.6E-5 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 9.0E-4 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c29710 b2d92e3a8b70fd8a05d22a0ad3779cda 453 SUPERFAMILY SSF53448 1 249 8.76E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:1.20.1640.10 502 1005 0.0 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 3.3E-71 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.70.1320 134 326 0.0 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82714 704 788 7.06E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:1.20.1640.10 10 501 0.0 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82693 40 134 6.28E-25 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.70.1430 40 799 0.0 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.70.1430 556 654 0.0 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82866 290 489 4.45E-46 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82866 794 1011 2.49E-49 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.2090.10 178 269 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82714 183 266 4.45E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82693 554 657 5.75E-17 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.2090.10 703 791 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 2.2E-277 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 SUPERFAMILY SSF82693 139 324 3.4E-19 T 11-10-2018 VV93_v1c10490 c9efd399e0a4fa5d4537c90390eaf242 1037 Gene3D G3DSA:3.30.70.1440 655 848 0.0 T 11-10-2018 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 SMART SM00354 1 72 3.2E-34 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 Gene3D G3DSA:1.10.260.40 3 60 7.2E-22 T 11-10-2018 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 SUPERFAMILY SSF47413 1 61 8.59E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 45 4.1E-19 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.7E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.7E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.5E-42 T 11-10-2018 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 Gene3D G3DSA:3.40.50.2300 70 323 7.1E-89 T 11-10-2018 VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 SUPERFAMILY SSF53822 62 332 5.5E-95 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c35760 b9cac3d872371f5e9ee87846e8c65e09 339 Gene3D G3DSA:3.40.50.2300 162 291 7.1E-89 T 11-10-2018 VV93_v1c29240 9f38b2d2646a8dff7b9847a20e25152f 278 Gene3D G3DSA:3.40.50.720 3 271 4.7E-80 T 11-10-2018 VV93_v1c29240 9f38b2d2646a8dff7b9847a20e25152f 278 SUPERFAMILY SSF69572 7 264 4.58E-70 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VV93_v1c29240 9f38b2d2646a8dff7b9847a20e25152f 278 Pfam PF00899 ThiF family 10 261 3.9E-54 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 SUPERFAMILY SSF46785 2 108 1.11E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 Gene3D G3DSA:3.40.190.10 175 251 8.8E-7 T 11-10-2018 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 4.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 Pfam PF03466 LysR substrate binding domain 87 283 4.6E-26 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 Gene3D G3DSA:3.40.190.10 80 174 5.2E-14 T 11-10-2018 VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 Gene3D G3DSA:1.10.10.10 1 79 7.1E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41590 b7f1df9a87e0e093a5e28d3d082b25e1 290 SUPERFAMILY SSF53850 89 287 6.98E-27 T 11-10-2018 VV93_v1c32030 9f18fab57b1d7745e71f0611472f632c 136 Pfam PF14534 Domain of unknown function (DUF4440) 29 126 7.9E-7 T 11-10-2018 IPR027843 Domain of unknown function DUF4440 VV93_v1c32030 9f18fab57b1d7745e71f0611472f632c 136 SUPERFAMILY SSF54427 25 135 1.44E-15 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c32030 9f18fab57b1d7745e71f0611472f632c 136 Gene3D G3DSA:3.10.450.50 28 136 6.6E-18 T 11-10-2018 VV93_v1c11550 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c11550 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c11550 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c01600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c01600 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c01600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c25960 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c25960 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c25960 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c16840 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c16840 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c16840 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c04700 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c04700 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c04700 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c28630 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c28630 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c28630 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c13360 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c13360 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c13360 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c39360 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c39360 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c39360 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c10780 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c10780 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c10780 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c42610 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c42610 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c42610 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c28930 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c28930 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c28930 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c23870 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c23870 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c23870 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c28910 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c28910 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c28910 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c28890 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c28890 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c28890 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c26890 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c26890 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c26890 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c00270 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c00270 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c00270 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c18040 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c18040 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c18040 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c26910 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c26910 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c26910 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c07670 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c07670 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c07670 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c04090 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c04090 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c04090 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c26870 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c26870 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c26870 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c00250 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c00250 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c00250 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c44140 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c44140 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44140 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c13160 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c13160 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c13160 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c30960 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c30960 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c30960 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c18600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c18600 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c18600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c32600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c32600 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c32600 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c17300 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c17300 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c17300 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c29310 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c29310 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c29310 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c36500 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c36500 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c36500 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c29330 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c29330 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c29330 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c33490 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c33490 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c33490 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c23400 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c23400 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c23400 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c20060 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13592 Winged helix-turn helix 99 156 3.1E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c20060 71bf2ee74835a960a37bab4a2e41cd3e 203 SUPERFAMILY SSF46689 16 132 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c20060 71bf2ee74835a960a37bab4a2e41cd3e 203 Pfam PF13551 Winged helix-turn helix 24 83 1.2E-13 T 11-10-2018 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 Gene3D G3DSA:3.10.20.30 1 112 8.2E-37 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 SUPERFAMILY SSF54292 5 107 1.57E-32 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 1.2E-14 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 PRINTS PR00355 Adrenodoxin signature 42 52 3.2E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 PRINTS PR00355 Adrenodoxin signature 60 74 3.2E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 PRINTS PR00355 Adrenodoxin signature 83 91 3.2E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 3.0E-61 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 VV93_v1c07060 923d80f3de09dae1110833f7466c22bc 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 Gene3D G3DSA:2.130.10.10 18 385 1.2E-98 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 Pfam PF13360 PQQ-like domain 76 311 2.7E-53 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SUPERFAMILY SSF50998 31 374 1.88E-81 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 384 40.646 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 243 274 0.022 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 192 223 130.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 280 312 27.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 107 138 0.011 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 146 178 5.2E-4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 322 353 1.2 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 SMART SM00564 63 94 0.004 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VV93_v1c07150 a0f462c0c99c11958aea8d1a53f98640 386 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 382 9.2E-140 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB VV93_v1c36710 53d5303cc0e817cc27dc5219c3b13e3b 566 PIRSF PIRSF031924 1 566 6.2E-224 T 11-10-2018 IPR026263 Alkaline phosphatase, prokaryotic GO:0004035 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c36710 53d5303cc0e817cc27dc5219c3b13e3b 566 SUPERFAMILY SSF53649 15 545 6.54E-63 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c36710 53d5303cc0e817cc27dc5219c3b13e3b 566 Gene3D G3DSA:3.40.720.10 26 556 3.3E-182 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c36710 53d5303cc0e817cc27dc5219c3b13e3b 566 Gene3D G3DSA:3.30.1360.150 374 496 3.3E-182 T 11-10-2018 VV93_v1c36710 53d5303cc0e817cc27dc5219c3b13e3b 566 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 30 505 1.1E-81 T 11-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 VV93_v1c00660 cd1d33a529ccb3837dca586275e76bad 141 PIRSF PIRSF006276 1 141 4.4E-53 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c00660 cd1d33a529ccb3837dca586275e76bad 141 Pfam PF00582 Universal stress protein family 3 138 1.5E-21 T 11-10-2018 IPR006016 UspA VV93_v1c00660 cd1d33a529ccb3837dca586275e76bad 141 Gene3D G3DSA:3.40.50.620 2 141 6.3E-48 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c00660 cd1d33a529ccb3837dca586275e76bad 141 SUPERFAMILY SSF52402 3 138 4.19E-33 T 11-10-2018 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.04 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 3.0E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 Gene3D G3DSA:3.40.50.720 6 259 3.6E-107 T 11-10-2018 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 SUPERFAMILY SSF51735 123 280 1.06E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 6 121 6.8E-39 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 Gene3D G3DSA:3.40.50.10860 8 276 3.6E-107 T 11-10-2018 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 SUPERFAMILY SSF53223 1 122 1.25E-39 T 11-10-2018 VV93_v1c20980 704950e0fae3b6e7bfeb5c0a3beb668f 285 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 4.0E-68 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 SUPERFAMILY SSF109604 309 495 1.48E-41 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 Gene3D G3DSA:1.10.3210.10 306 497 7.9E-47 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 Gene3D G3DSA:3.30.420.150 114 291 5.3E-84 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 4 495 52.886 T 11-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 SUPERFAMILY SSF53067 134 305 9.99E-43 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 Gene3D G3DSA:3.30.420.40 11 298 5.3E-84 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 Pfam PF02541 Ppx/GppA phosphatase family 23 303 3.7E-88 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 SUPERFAMILY SSF53067 9 129 8.42E-37 T 11-10-2018 VV93_v1c29050 084de3d5b17779dcd4e7b808d88474d3 497 PIRSF PIRSF001267 1 497 4.7E-178 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 VV93_v1c04890 c486d8cf78d3692d299640426749958d 361 Gene3D G3DSA:3.40.50.300 3 345 4.0E-24 T 11-10-2018 VV93_v1c04890 c486d8cf78d3692d299640426749958d 361 PIRSF PIRSF029347 2 100 2.0E-14 T 11-10-2018 IPR014555 RecF-like VV93_v1c04890 c486d8cf78d3692d299640426749958d 361 PIRSF PIRSF029347 103 345 2.1E-28 T 11-10-2018 IPR014555 RecF-like VV93_v1c04890 c486d8cf78d3692d299640426749958d 361 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 154 309 1.1E-18 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c04890 c486d8cf78d3692d299640426749958d 361 SUPERFAMILY SSF52540 1 347 1.92E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15910 fc058b08a756259ed6bccc6c096b453c 202 Gene3D G3DSA:3.30.70.20 63 120 1.3E-33 T 11-10-2018 VV93_v1c15910 fc058b08a756259ed6bccc6c096b453c 202 Pfam PF13247 4Fe-4S dicluster domain 54 125 9.7E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c15910 fc058b08a756259ed6bccc6c096b453c 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c15910 fc058b08a756259ed6bccc6c096b453c 202 Gene3D G3DSA:3.30.70.20 5 181 1.3E-33 T 11-10-2018 VV93_v1c15910 fc058b08a756259ed6bccc6c096b453c 202 SUPERFAMILY SSF54862 1 183 3.24E-48 T 11-10-2018 VV93_v1c36650 7d1841abb337ddf01d1aea408ec32774 320 Pfam PF01882 Protein of unknown function DUF58 58 143 3.8E-21 T 11-10-2018 IPR002881 Domain of unknown function DUF58 VV93_v1c36650 7d1841abb337ddf01d1aea408ec32774 320 SUPERFAMILY SSF53300 94 256 6.23E-6 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c01770 10e216d7d9937075392fc9d61290649b 181 Pfam PF04220 Der GTPase activator (YihI) 21 171 1.6E-43 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 VV93_v1c01770 10e216d7d9937075392fc9d61290649b 181 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 174 16.362 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Gene3D G3DSA:4.10.320.10 322 367 1.1E-20 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Pfam PF00364 Biotin-requiring enzyme 102 171 6.7E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Pfam PF00364 Biotin-requiring enzyme 206 276 2.4E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Pfam PF00364 Biotin-requiring enzyme 4 73 6.0E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 123 152 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 SUPERFAMILY SSF51230 100 192 1.44E-22 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Gene3D G3DSA:2.40.50.100 205 282 4.4E-21 T 11-10-2018 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Gene3D G3DSA:2.40.50.100 1 80 1.7E-20 T 11-10-2018 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Gene3D G3DSA:2.40.50.100 100 177 1.2E-20 T 11-10-2018 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 399 629 1.3E-79 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 187 630 9.1E-204 T 11-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Gene3D G3DSA:3.30.559.10 383 630 2.2E-96 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 SUPERFAMILY SSF47005 316 361 1.11E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 SUPERFAMILY SSF51230 1 90 3.93E-22 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 SUPERFAMILY SSF51230 206 297 2.22E-23 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 SUPERFAMILY SSF52777 388 629 3.51E-81 T 11-10-2018 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 Pfam PF02817 e3 binding domain 323 357 3.3E-14 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c24840 c528779aba00d74c57e400f63a3bc1e0 630 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 228 257 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VV93_v1c30250 4ae1ace0105ffa88a6e9e2ff15f1abfc 231 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c30250 4ae1ace0105ffa88a6e9e2ff15f1abfc 231 Pfam PF00005 ABC transporter 21 169 1.5E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c30250 4ae1ace0105ffa88a6e9e2ff15f1abfc 231 Gene3D G3DSA:3.40.50.300 1 228 2.0E-64 T 11-10-2018 VV93_v1c30250 4ae1ace0105ffa88a6e9e2ff15f1abfc 231 SMART SM00382 30 217 5.2E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c30250 4ae1ace0105ffa88a6e9e2ff15f1abfc 231 SUPERFAMILY SSF52540 1 224 5.32E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 224 240 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 12 285 3.4E-106 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 184 191 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 SUPERFAMILY SSF51658 12 287 2.88E-98 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 Pfam PF01261 Xylose isomerase-like TIM barrel 29 248 4.1E-39 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 Hamap MF_00152 Probable endonuclease 4 [nfo]. 11 288 42.127 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 SMART SM00518 12 288 3.6E-121 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 78 86 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 VV93_v1c05930 1125b3d6a2ecb94834bfa0caa3b2f86a 293 Gene3D G3DSA:3.20.20.150 10 291 4.7E-110 T 11-10-2018 VV93_v1c08890 1a0657c02b7dc05812b710f6dbe9875a 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VV93_v1c08890 1a0657c02b7dc05812b710f6dbe9875a 138 Pfam PF00460 Flagella basal body rod protein 7 32 1.8E-7 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VV93_v1c08890 1a0657c02b7dc05812b710f6dbe9875a 138 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 1.9E-51 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 VV93_v1c08890 1a0657c02b7dc05812b710f6dbe9875a 138 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 136 3.1E-12 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VV93_v1c11220 ab8025e258330f2983f739534167c203 543 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 461 6.8E-95 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c11220 ab8025e258330f2983f739534167c203 543 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 88 109 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site VV93_v1c11220 ab8025e258330f2983f739534167c203 543 PIRSF PIRSF002741 1 543 1.9E-118 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c11220 ab8025e258330f2983f739534167c203 543 Gene3D G3DSA:3.10.105.10 297 512 5.2E-194 T 11-10-2018 VV93_v1c11220 ab8025e258330f2983f739534167c203 543 Gene3D G3DSA:3.90.76.10 72 195 5.2E-194 T 11-10-2018 VV93_v1c11220 ab8025e258330f2983f739534167c203 543 SUPERFAMILY SSF53850 35 530 4.52E-150 T 11-10-2018 VV93_v1c11220 ab8025e258330f2983f739534167c203 543 Gene3D G3DSA:3.40.190.10 42 524 5.2E-194 T 11-10-2018 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 7 199 2.7E-75 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.0E-84 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.678 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 Pfam PF00925 GTP cyclohydrolase II 207 367 7.1E-40 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 Gene3D G3DSA:3.90.870.10 1 206 1.6E-88 T 11-10-2018 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 PIRSF PIRSF001259 3 369 1.4E-129 T 11-10-2018 VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 SUPERFAMILY SSF55821 3 202 8.47E-87 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VV93_v1c08020 dfad7f6aaad0e0ed8b9bea01969a8ea0 369 SUPERFAMILY SSF142695 205 367 2.22E-48 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 SUPERFAMILY SSF52777 31 176 1.11E-12 T 11-10-2018 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Gene3D G3DSA:3.30.559.10 19 193 5.7E-9 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Gene3D G3DSA:3.30.559.10 554 934 3.7E-64 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 SUPERFAMILY SSF52777 551 751 9.64E-34 T 11-10-2018 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 SUPERFAMILY SSF52777 739 997 4.78E-30 T 11-10-2018 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Gene3D G3DSA:3.30.559.30 735 984 3.7E-64 T 11-10-2018 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Pfam PF00550 Phosphopantetheine attachment site 469 520 7.5E-8 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Gene3D G3DSA:1.10.1200.10 440 528 1.4E-14 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 SMART SM00823 Phosphopantetheine attachment site 454 526 0.006 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 Pfam PF00668 Condensation domain 552 989 2.1E-43 T 11-10-2018 IPR001242 Condensation domain VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 SUPERFAMILY SSF47336 452 520 7.46E-11 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c42160 1923fd43a588c0fddf33b84f3debd5ef 1017 ProSitePatterns PS00012 Phosphopantetheine attachment site. 481 496 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 6.6E-74 T 11-10-2018 IPR017757 Transcriptional repressor BetI VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 SUPERFAMILY SSF46689 5 77 9.75E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 198 95.266 T 11-10-2018 IPR017757 Transcriptional repressor BetI VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.1E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 SUPERFAMILY SSF48498 86 192 2.78E-16 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 Gene3D G3DSA:1.10.357.10 6 195 3.4E-43 T 11-10-2018 VV93_v1c35130 68bdf16d1ed3a798108be1ddb827987e 198 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 85 192 2.7E-31 T 11-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 125 135 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 Pfam PF01026 TatD related DNase 3 253 5.6E-79 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 SUPERFAMILY SSF51556 1 253 5.41E-87 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 Gene3D G3DSA:3.20.20.140 1 255 2.3E-100 T 11-10-2018 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 5.6E-93 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VV93_v1c11990 eb4c5e1447a00b9a46c120230e780139 255 PIRSF PIRSF005902 1 255 4.4E-83 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Gene3D G3DSA:2.60.40.3470 21 136 3.1E-14 T 11-10-2018 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Pfam PF07660 Secretin and TonB N terminus short domain 180 228 8.6E-7 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Pfam PF03958 Bacterial type II/III secretion system short domain 254 319 1.6E-11 T 11-10-2018 IPR005644 NolW-like VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 155 586 1.6E-162 T 11-10-2018 IPR013355 Type IV pilus secretin PilQ VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Gene3D G3DSA:3.30.1370.120 252 315 2.9E-11 T 11-10-2018 IPR038591 NolW-like superfamily VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 SMART SM00965 180 228 7.2E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Pfam PF00263 Bacterial type II and III secretion system protein 428 586 1.8E-45 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 532 565 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 Gene3D G3DSA:3.55.50.30 137 251 3.2E-38 T 11-10-2018 VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 PRINTS PR00811 Bacterial general secretion pathway protein D signature 551 569 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 PRINTS PR00811 Bacterial general secretion pathway protein D signature 574 588 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 PRINTS PR00811 Bacterial general secretion pathway protein D signature 319 329 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 PRINTS PR00811 Bacterial general secretion pathway protein D signature 459 469 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c27190 84ba6079aef391483d6284f11de565b7 588 PRINTS PR00811 Bacterial general secretion pathway protein D signature 424 448 9.0E-21 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Pfam PF02347 Glycine cleavage system P-protein 17 438 3.8E-179 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Pfam PF02347 Glycine cleavage system P-protein 458 734 2.8E-8 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Gene3D G3DSA:3.40.640.10 95 353 8.4E-103 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Gene3D G3DSA:3.40.640.10 522 747 2.7E-58 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 SUPERFAMILY SSF53383 17 438 7.33E-101 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 946 0.0 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 SUPERFAMILY SSF53383 454 947 4.08E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 952 25.602 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 VV93_v1c36900 d9a2ef74cae0672cc17a42d78ffb9edb 954 Gene3D G3DSA:3.90.1150.10 760 896 1.1E-42 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Gene3D G3DSA:3.40.50.970 317 490 4.1E-66 T 11-10-2018 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 1.3E-119 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Pfam PF02780 Transketolase, C-terminal domain 495 611 1.1E-28 T 11-10-2018 IPR033248 Transketolase, C-terminal domain VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Pfam PF02779 Transketolase, pyrimidine binding domain 319 479 4.9E-37 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 SMART SM00861 319 483 5.5E-64 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 SUPERFAMILY SSF52922 492 619 1.02E-33 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 SUPERFAMILY SSF52518 317 504 4.79E-58 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 0.0 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.131 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 SUPERFAMILY SSF52518 9 381 3.69E-76 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c08070 bd22b890b14486b78a01d85e5ff6ad0e 621 Gene3D G3DSA:3.40.50.920 495 621 4.9E-46 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c18030 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c18030 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c20050 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c20050 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c25970 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c25970 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c04710 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c04710 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c11540 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c11540 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c17310 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c17310 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c16830 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c16830 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c13370 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c13370 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c28620 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c28620 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c42600 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c42600 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c28940 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c28940 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c01590 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c01590 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c23880 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c23880 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c26920 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c26920 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c10770 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c10770 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c39350 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c39350 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c26880 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c26880 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c04080 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c04080 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c13170 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c13170 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c00240 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c00240 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c44130 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c44130 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c07660 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c07660 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c30950 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c30950 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c33480 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c33480 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c18610 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c18610 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c29320 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c29320 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c32590 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c32590 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c36510 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c36510 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c29340 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c29340 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c23390 6770b3e70b0143bddd4d71c29edc1f4a 118 Gene3D G3DSA:3.30.420.470 5 113 1.3E-10 T 11-10-2018 VV93_v1c23390 6770b3e70b0143bddd4d71c29edc1f4a 118 Pfam PF13358 DDE superfamily endonuclease 6 87 3.0E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 SUPERFAMILY SSF53335 5 268 2.71E-76 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 PIRSF PIRSF000398 1 274 3.1E-71 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 Gene3D G3DSA:1.10.1020.10 57 156 1.9E-83 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 4.1E-94 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 Gene3D G3DSA:3.40.50.150 7 239 1.9E-83 T 11-10-2018 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 8.7E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 8.7E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 8.7E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 8.7E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c27150 818b64702f7c56c878a1b64bf45b3631 275 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 1.9E-69 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 VV93_v1c44060 0209ea536b41cca33f8cac8ef5c86f23 255 SMART SM00382 26 214 1.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c44060 0209ea536b41cca33f8cac8ef5c86f23 255 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c44060 0209ea536b41cca33f8cac8ef5c86f23 255 SUPERFAMILY SSF52540 6 231 1.2E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44060 0209ea536b41cca33f8cac8ef5c86f23 255 Gene3D G3DSA:3.40.50.300 3 253 3.6E-67 T 11-10-2018 VV93_v1c44060 0209ea536b41cca33f8cac8ef5c86f23 255 Pfam PF00005 ABC transporter 18 166 1.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 SUPERFAMILY SSF56519 58 254 5.49E-56 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 SUPERFAMILY SSF56601 256 620 2.18E-94 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 617 2.5E-75 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Gene3D G3DSA:3.40.710.10 251 629 1.4E-92 T 11-10-2018 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 241 7.6E-51 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Gene3D G3DSA:3.90.1310.10 66 250 5.5E-53 T 11-10-2018 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 22 620 1.6E-239 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 5 624 53.387 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c08430 370679795b467abc64e2f5fb06a1f824 630 Gene3D G3DSA:3.30.1390.30 87 162 5.5E-53 T 11-10-2018 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 Gene3D G3DSA:1.10.1060.10 107 244 2.2E-50 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 5.4E-94 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 SUPERFAMILY SSF54292 5 106 1.84E-29 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 2.6E-33 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 Gene3D G3DSA:3.10.20.30 4 106 7.1E-35 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 SUPERFAMILY SSF46548 107 226 1.08E-30 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c28210 dd30c02467fd081d9af975b314c2cc2f 252 Pfam PF13183 4Fe-4S dicluster domain 147 219 6.4E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 SMART SM00937 23 133 2.6E-54 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 3 303 32.304 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 183 199 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Gene3D G3DSA:3.30.160.20 164 259 1.3E-96 T 11-10-2018 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 301 7.0E-151 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Gene3D G3DSA:1.20.58.410 1 54 1.9E-12 T 11-10-2018 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 SUPERFAMILY SSF75620 2 302 4.97E-127 T 11-10-2018 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Pfam PF03462 PCRF domain 1 157 9.5E-49 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Pfam PF00472 RF-1 domain 167 275 1.9E-40 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VV93_v1c06070 c15662bc7bc1a6ea36d45455932ea6e5 303 Gene3D G3DSA:3.30.70.1660 68 296 1.3E-96 T 11-10-2018 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 3 107 4.0E-42 T 11-10-2018 IPR011298 FeS assembly scaffold SufA GO:0097428 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 SUPERFAMILY SSF89360 1 96 5.76E-35 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 5.2E-39 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 3.9E-58 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 9.9E-27 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 Gene3D G3DSA:2.60.300.12 2 107 1.9E-39 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c07030 c089f6bc9682123be14fb20a648c64b1 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 Pfam PF02545 Maf-like protein 3 184 1.5E-61 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 Gene3D G3DSA:3.90.950.10 2 186 1.0E-70 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 182 1.8E-54 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 Hamap MF_00528 Septum formation protein Maf [maf]. 3 186 29.926 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 PIRSF PIRSF006305 1 186 3.7E-58 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c26540 7843cd87a094cf71704982cd808a0e38 186 SUPERFAMILY SSF52972 1 184 2.09E-63 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 SUPERFAMILY SSF54747 3 73 1.07E-30 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 Gene3D G3DSA:1.10.10.250 73 141 1.3E-25 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 SMART SM00649 9 141 3.7E-83 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 11-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 11-10-2018 VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 Gene3D G3DSA:3.30.1550.10 2 72 1.7E-35 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 SUPERFAMILY SSF46906 68 141 3.27E-25 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.906 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.9E-23 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 2.6E-30 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal VV93_v1c28800 75ebcefca62bf77b9bcb1579362666c0 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 5.1E-65 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c36550 5a9d24c1b3ee3d4869c956a5133c13ad 116 Pfam PF11225 Protein of unknown function (DUF3024) 58 116 4.1E-18 T 11-10-2018 IPR021388 Bacteriophage 933W, L0084 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 Pfam PF09190 DALR domain 390 451 8.1E-25 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 51 508 1.1E-192 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 Gene3D G3DSA:3.40.50.620 40 354 3.8E-139 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 SUPERFAMILY SSF52374 50 362 2.18E-104 T 11-10-2018 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 SMART SM00840 390 451 6.9E-28 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 51 509 39.297 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 74 85 5.1E-29 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 271 292 5.1E-29 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 240 258 5.1E-29 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 110 119 5.1E-29 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 SUPERFAMILY SSF47323 365 508 4.05E-40 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 64 362 3.1E-142 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 VV93_v1c12750 8b3d0d78454fdc170d917d315bc1c361 509 Gene3D G3DSA:1.20.120.640 355 509 7.2E-52 T 11-10-2018 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 8.7E-80 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 Gene3D G3DSA:3.20.20.60 4 332 6.3E-147 T 11-10-2018 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 1.8E-154 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 Gene3D G3DSA:3.40.1380.20 336 467 3.0E-41 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 Gene3D G3DSA:2.40.33.10 71 167 6.3E-147 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 SUPERFAMILY SSF51621 1 339 1.4E-101 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 1.4E-27 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 SUPERFAMILY SSF50800 70 167 4.88E-29 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 8.9E-186 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c04660 f53eaed6827a280771a34539a42cef05 470 SUPERFAMILY SSF52935 323 469 7.59E-34 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 109 5.6E-30 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 SUPERFAMILY SSF54292 1 104 1.78E-29 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 SUPERFAMILY SSF46548 105 233 8.72E-40 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 228 2.8E-85 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 1.4E-10 T 11-10-2018 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 Gene3D G3DSA:1.10.1060.10 105 236 8.6E-56 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 Gene3D G3DSA:3.10.20.30 1 104 6.0E-33 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c09540 2d18228f54f593bc4b03cce3d413cd04 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 Pfam PF13727 CoA-binding domain 62 245 1.3E-29 T 11-10-2018 VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 21 471 1.1E-140 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 Pfam PF02397 Bacterial sugar transferase 281 463 3.0E-64 T 11-10-2018 IPR003362 Bacterial sugar transferase VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 Gene3D G3DSA:3.40.50.720 144 265 1.2E-13 T 11-10-2018 VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 SUPERFAMILY SSF51735 145 272 5.31E-8 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c18080 4b78ab2f485bd3fc623cbb83d634b51e 471 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 22 471 1.2E-156 T 11-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 VV93_v1c04410 a4cafd72caaf12f3998d3e226e7a65ad 154 Pfam PF12821 Threonine/Serine exporter, ThrE 10 144 1.3E-36 T 11-10-2018 IPR024528 Threonine/Serine exporter, ThrE VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF52440 556 675 3.02E-49 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:3.40.50.1380 937 1072 3.5E-33 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:3.30.470.20 665 934 3.9E-125 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 8.1E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF52440 1 127 3.17E-50 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF56059 673 932 3.54E-104 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.107 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:3.30.470.20 119 403 3.7E-129 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF56059 128 401 2.12E-108 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:3.40.50.20 1 116 8.1E-51 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF48108 397 554 3.01E-52 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SMART SM01096 424 547 5.8E-76 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1050 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:3.40.50.20 554 662 2.6E-49 T 11-10-2018 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Pfam PF02142 MGS-like domain 956 1041 1.5E-15 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SMART SM00851 955 1041 2.0E-25 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.389 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 3.1E-41 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.5E-72 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 1.2E-37 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 Gene3D G3DSA:1.10.1030.10 404 553 6.7E-53 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c05680 f98cba2fdf6b9af53f5f65ced5bde0bd 1077 SUPERFAMILY SSF52335 936 1071 2.62E-34 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c43060 73241dbdce3f209963762d019eb2dfae 106 SUPERFAMILY SSF51182 10 104 4.59E-23 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c43060 73241dbdce3f209963762d019eb2dfae 106 PIRSF PIRSF029883 1 106 1.9E-37 T 11-10-2018 IPR025499 Pectin degradation protein KdgF VV93_v1c43060 73241dbdce3f209963762d019eb2dfae 106 Pfam PF07883 Cupin domain 32 87 2.8E-14 T 11-10-2018 IPR013096 Cupin 2, conserved barrel VV93_v1c43060 73241dbdce3f209963762d019eb2dfae 106 Gene3D G3DSA:2.60.120.10 1 106 4.6E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 SUPERFAMILY SSF74731 2 116 5.62E-50 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 Gene3D G3DSA:1.10.1900.20 56 117 1.0E-28 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 Gene3D G3DSA:1.10.720.90 2 55 1.1E-24 T 11-10-2018 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 Pfam PF00453 Ribosomal protein L20 3 108 9.9E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.596 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.5E-52 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.8E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.8E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.8E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17020 070ac683e597a207494e9cfb26acddbf 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-22 T 11-10-2018 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 Gene3D G3DSA:1.50.10.10 306 784 6.5E-257 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 Gene3D G3DSA:1.10.287.100 261 299 5.7E-20 T 11-10-2018 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 SUPERFAMILY SSF48208 275 783 1.6E-83 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 Gene3D G3DSA:3.30.1390.40 485 516 6.5E-257 T 11-10-2018 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 Pfam PF01204 Trehalase 419 766 4.8E-11 T 11-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 VV93_v1c23640 111d54909ee642b239af25231c7867c2 788 Gene3D G3DSA:2.70.98.50 29 260 3.2E-97 T 11-10-2018 VV93_v1c27990 f0f4661fee8256388bbf2cd58172022a 86 SUPERFAMILY SSF50182 7 69 1.16E-24 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c27990 f0f4661fee8256388bbf2cd58172022a 86 Pfam PF17209 Hfq protein 7 69 1.7E-31 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VV93_v1c27990 f0f4661fee8256388bbf2cd58172022a 86 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.727 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VV93_v1c27990 f0f4661fee8256388bbf2cd58172022a 86 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 6.6E-30 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 VV93_v1c27990 f0f4661fee8256388bbf2cd58172022a 86 Gene3D G3DSA:2.30.30.100 1 72 4.5E-35 T 11-10-2018 VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 Gene3D G3DSA:3.30.110.60 1 98 6.0E-36 T 11-10-2018 IPR035920 YhbY-like superfamily VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 7.9E-37 T 11-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 1.5E-19 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 SUPERFAMILY SSF75471 1 94 1.19E-28 T 11-10-2018 IPR035920 YhbY-like superfamily VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 SMART SM01103 3 86 4.9E-39 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VV93_v1c24330 5418892a26625bab18b36374e780d90c 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 98 3.0E-44 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 VV93_v1c24070 0e79d572abea75b8bb0e8233c9ac6b51 150 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 143 1.5E-37 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 VV93_v1c24070 0e79d572abea75b8bb0e8233c9ac6b51 150 SUPERFAMILY SSF55729 1 145 3.38E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c24070 0e79d572abea75b8bb0e8233c9ac6b51 150 Pfam PF00583 Acetyltransferase (GNAT) family 15 121 4.4E-14 T 11-10-2018 IPR000182 GNAT domain VV93_v1c24070 0e79d572abea75b8bb0e8233c9ac6b51 150 Gene3D G3DSA:3.40.630.30 3 147 3.9E-40 T 11-10-2018 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 SUPERFAMILY SSF58104 259 513 4.05E-74 T 11-10-2018 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 SMART SM00091 5 72 0.0059 T 11-10-2018 IPR000014 PAS domain VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 Pfam PF08447 PAS fold 28 112 1.5E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 267 296 2.2E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 380 409 2.2E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 SUPERFAMILY SSF55785 17 112 1.42E-24 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 481 5.9E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 SMART SM00283 256 514 2.7E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 Gene3D G3DSA:3.30.450.20 7 145 1.2E-23 T 11-10-2018 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 Gene3D G3DSA:1.10.287.950 195 514 3.8E-62 T 11-10-2018 VV93_v1c38700 01e7366490cf117a4b8232f01e16be3d 514 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 109 7.9E-10 T 11-10-2018 IPR000014 PAS domain VV93_v1c27020 ff606523d95c1124a7c1f2a11f3d2144 149 Pfam PF01475 Ferric uptake regulator family 20 138 3.4E-19 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VV93_v1c27020 ff606523d95c1124a7c1f2a11f3d2144 149 Gene3D G3DSA:1.10.10.10 2 89 2.4E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c27020 ff606523d95c1124a7c1f2a11f3d2144 149 SUPERFAMILY SSF46785 11 144 3.09E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c27020 ff606523d95c1124a7c1f2a11f3d2144 149 Gene3D G3DSA:3.30.1490.190 91 149 1.4E-15 T 11-10-2018 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 27 1308 0.0 T 11-10-2018 IPR010222 RNA helicase HrpA GO:0004004 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Gene3D G3DSA:3.40.50.300 266 433 2.0E-55 T 11-10-2018 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 SMART SM00490 316 416 7.2E-15 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Pfam PF04408 Helicase associated domain (HA2) 478 569 1.4E-19 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 634 710 4.8E-22 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Pfam PF00270 DEAD/DEAH box helicase 101 246 2.4E-7 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Pfam PF00271 Helicase conserved C-terminal domain 302 415 3.1E-11 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Gene3D G3DSA:3.40.50.300 40 265 4.6E-78 T 11-10-2018 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 SUPERFAMILY SSF52540 87 610 1.69E-115 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Pfam PF11898 Domain of unknown function (DUF3418) 724 1308 5.1E-232 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 Gene3D G3DSA:1.20.120.1080 460 562 8.1E-20 T 11-10-2018 VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 SMART SM00487 85 272 1.9E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 SMART SM00382 105 396 3.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c17590 3418fae62368a888934f5d04453d4b39 1310 SMART SM00847 476 571 1.4E-39 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 SUPERFAMILY SSF56784 3 157 2.0E-39 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 147 2.6E-48 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 169 357 37.608 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 SUPERFAMILY SSF54211 254 344 4.05E-31 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 SUPERFAMILY SSF54211 169 253 4.3E-32 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 321 333 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Gene3D G3DSA:3.40.50.1000 1 165 9.0E-47 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Gene3D G3DSA:3.30.230.40 166 256 2.5E-35 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 198 339 8.8E-66 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Pfam PF08645 Polynucleotide kinase 3 phosphatase 6 132 6.0E-6 T 11-10-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Gene3D G3DSA:3.30.230.40 257 357 7.4E-37 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 6 151 4.4E-28 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 228 241 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 4 357 51.114 T 11-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 VV93_v1c12660 054932b80a69caa326d2a8b9db7367b9 357 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 5 164 1.5E-79 T 11-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 VV93_v1c15340 19c7678048ed505b437e504a8907d8b4 172 Pfam PF07977 FabA-like domain 29 158 2.8E-54 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c15340 19c7678048ed505b437e504a8907d8b4 172 SUPERFAMILY SSF54637 4 169 1.31E-56 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c15340 19c7678048ed505b437e504a8907d8b4 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.736 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c15340 19c7678048ed505b437e504a8907d8b4 172 Gene3D G3DSA:3.10.129.10 2 172 1.8E-66 T 11-10-2018 VV93_v1c15340 19c7678048ed505b437e504a8907d8b4 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 172 2.2E-93 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 SUPERFAMILY SSF46894 130 191 1.09E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 Gene3D G3DSA:1.10.10.10 129 194 3.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 SMART SM00448 4 117 4.8E-9 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 Gene3D G3DSA:3.40.50.2300 1 128 1.4E-17 T 11-10-2018 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 7.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 7.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 7.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 191 1.3E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 SMART SM00421 136 193 1.1E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 SUPERFAMILY SSF52172 5 131 6.12E-19 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 Pfam PF00072 Response regulator receiver domain 6 117 1.9E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33090 d3d813de4aa1478c2eed98a5c31f38fc 195 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c07440 b67b144ca836a879162f4d323d650033 66 SUPERFAMILY SSF46955 2 55 2.38E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c07440 b67b144ca836a879162f4d323d650033 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 52 7.4E-26 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 Gene3D G3DSA:3.20.20.80 18 388 2.0E-79 T 11-10-2018 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 Pfam PF00128 Alpha amylase, catalytic domain 40 247 3.2E-17 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 SUPERFAMILY SSF51445 20 373 4.49E-60 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 SUPERFAMILY SSF51011 395 457 1.66E-7 T 11-10-2018 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 PRINTS PR00110 Alpha-amylase signature 97 108 1.3E-16 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 PRINTS PR00110 Alpha-amylase signature 305 317 1.3E-16 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 PRINTS PR00110 Alpha-amylase signature 210 221 1.3E-16 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 PRINTS PR00110 Alpha-amylase signature 239 257 1.3E-16 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 PRINTS PR00110 Alpha-amylase signature 64 81 1.3E-16 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c34180 3d6699a1428b1783785b63c554a05433 459 SMART SM00642 22 383 4.4E-27 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 SMART SM00388 220 286 8.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 Gene3D G3DSA:1.10.287.130 206 285 2.6E-11 T 11-10-2018 VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 Gene3D G3DSA:3.30.565.10 293 417 9.4E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 SUPERFAMILY SSF47384 205 284 3.92E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 Pfam PF00512 His Kinase A (phospho-acceptor) domain 222 284 2.1E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c09870 57fcccacb37550d8e65aaa8c72af2600 418 SUPERFAMILY SSF55874 286 407 1.28E-11 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c34860 099ef605b8a6d781987a34a58fbc1429 117 Pfam PF00589 Phage integrase family 13 102 8.3E-11 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c34860 099ef605b8a6d781987a34a58fbc1429 117 Gene3D G3DSA:1.10.443.10 2 116 2.2E-16 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c34860 099ef605b8a6d781987a34a58fbc1429 117 SUPERFAMILY SSF56349 3 115 3.53E-24 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c01300 099ef605b8a6d781987a34a58fbc1429 117 Pfam PF00589 Phage integrase family 13 102 8.3E-11 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c01300 099ef605b8a6d781987a34a58fbc1429 117 Gene3D G3DSA:1.10.443.10 2 116 2.2E-16 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c01300 099ef605b8a6d781987a34a58fbc1429 117 SUPERFAMILY SSF56349 3 115 3.53E-24 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 7.7E-7 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 7.7E-7 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 7.7E-7 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 333 7.3E-62 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 SUPERFAMILY SSF51905 3 219 2.59E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 Gene3D G3DSA:3.50.50.100 1 406 5.0E-115 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.8E-13 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 1.8E-13 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 1.8E-13 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.8E-13 T 11-10-2018 VV93_v1c20760 167efaeb5db1b141d87198f00a25229c 429 SUPERFAMILY SSF51905 165 347 3.42E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 241 6.9E-79 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 Pfam PF00121 Triosephosphate isomerase 5 247 1.8E-87 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 SUPERFAMILY SSF51351 2 250 3.67E-89 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 Gene3D G3DSA:3.20.20.70 1 256 5.5E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c27530 64397f510c23b01e22dadb72f321b8af 256 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 250 59.393 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Gene3D G3DSA:1.20.58.760 406 609 3.3E-72 T 11-10-2018 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Pfam PF01434 Peptidase family M41 386 595 4.3E-81 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 SMART SM00382 188 327 3.6E-26 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 324 6.7E-46 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Gene3D G3DSA:2.40.50.920 27 103 2.0E-29 T 11-10-2018 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Gene3D G3DSA:3.40.50.300 140 326 9.9E-70 T 11-10-2018 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 SUPERFAMILY SSF52540 147 395 1.2E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 SUPERFAMILY SSF140990 406 601 4.97E-75 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 628 37.213 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Pfam PF06480 FtsH Extracellular 8 96 4.5E-12 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 105 597 1.0E-241 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 VV93_v1c24310 e01a3ded979a6451f7a8b58399c6ee94 653 Gene3D G3DSA:1.10.8.60 327 403 2.1E-27 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:1.10.132.30 641 790 3.4E-66 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:2.40.50.100 1151 1214 5.2E-64 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:2.40.50.100 1022 1126 1.2E-29 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 3.5E-77 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 5.1E-27 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 395 4.5E-8 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 1.9E-27 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 SUPERFAMILY SSF64484 16 1362 0.0 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:1.10.150.390 1315 1376 1.2E-28 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:1.10.40.90 374 416 3.1E-22 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 SMART SM00663 235 514 1.1E-184 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:1.10.1790.20 1135 1313 5.2E-64 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:1.10.274.100 490 640 3.9E-39 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1376 18.988 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Gene3D G3DSA:2.40.50.100 948 1021 5.0E-24 T 11-10-2018 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 5.9E-88 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28750 db0f23d854db8ad77d704d80793993d2 1400 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 5.0E-19 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c18740 66271d19eb322dfb8d80076fc0f019b5 362 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 327 6.0E-71 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VV93_v1c18740 66271d19eb322dfb8d80076fc0f019b5 362 PIRSF PIRSF039026 4 362 2.4E-141 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like VV93_v1c18740 66271d19eb322dfb8d80076fc0f019b5 362 Gene3D G3DSA:3.40.190.10 156 327 3.7E-117 T 11-10-2018 VV93_v1c18740 66271d19eb322dfb8d80076fc0f019b5 362 Gene3D G3DSA:3.40.190.170 38 348 3.7E-117 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.1E-22 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SMART SM00959 5 47 1.3E-18 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Gene3D G3DSA:1.10.720.10 1 47 5.6E-23 T 11-10-2018 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SMART SM00382 170 355 9.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.4E-220 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Gene3D G3DSA:3.40.50.300 130 417 2.0E-134 T 11-10-2018 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SUPERFAMILY SSF52540 90 371 1.6E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Gene3D G3DSA:2.40.50.140 48 117 1.1E-34 T 11-10-2018 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.4E-18 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 253.558 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SUPERFAMILY SSF68912 1 46 2.24E-12 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SUPERFAMILY SSF50249 48 125 7.42E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 SMART SM00357 52 118 1.7E-17 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c29020 b0f9c75157877c3206a06719a952484b 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 7.7E-32 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 ProSitePatterns PS00195 Glutaredoxin active site. 110 126 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 Gene3D G3DSA:3.40.30.10 109 185 3.1E-19 T 11-10-2018 VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 Pfam PF00462 Glutaredoxin 109 174 2.3E-15 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 PRINTS PR00160 Glutaredoxin signature 157 170 6.1E-8 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 PRINTS PR00160 Glutaredoxin signature 171 184 6.1E-8 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 PRINTS PR00160 Glutaredoxin signature 108 126 6.1E-8 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c40700 ff68741185b140ce24e7a6080917a923 201 SUPERFAMILY SSF52833 109 189 3.17E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 Pfam PF00491 Arginase family 46 325 1.0E-61 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 ProSitePatterns PS01053 Arginase family signature. 255 276 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 PRINTS PR00116 Arginase signature 125 140 1.6E-5 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 PRINTS PR00116 Arginase signature 252 281 1.6E-5 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 TIGRFAM TIGR01227 hutG: formimidoylglutamase 13 327 2.9E-116 T 11-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 Hamap MF_00737 Formimidoylglutamase [hutG]. 8 327 44.541 T 11-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 PIRSF PIRSF036979 25 333 8.5E-26 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 Gene3D G3DSA:3.40.800.10 5 336 3.0E-130 T 11-10-2018 VV93_v1c17100 f99f1dcbbef15684baa676ba2a9189c5 336 SUPERFAMILY SSF52768 13 330 1.03E-84 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily VV93_v1c29930 1dc3c99f84fc64d8e94fb97409f2685d 344 Pfam PF13310 Virulence protein RhuM family 69 322 1.2E-114 T 11-10-2018 IPR011204 Virulence protein RhuM-like VV93_v1c29930 1dc3c99f84fc64d8e94fb97409f2685d 344 PIRSF PIRSF015268 3 344 6.4E-149 T 11-10-2018 IPR011204 Virulence protein RhuM-like VV93_v1c12290 416a5a811ffbbb8382e1cfa38c9258fb 254 SUPERFAMILY SSF47240 6 250 2.84E-72 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c12290 416a5a811ffbbb8382e1cfa38c9258fb 254 PIRSF PIRSF020736 1 252 4.2E-90 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VV93_v1c12290 416a5a811ffbbb8382e1cfa38c9258fb 254 Gene3D G3DSA:1.20.1260.10 102 254 7.4E-55 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c12290 416a5a811ffbbb8382e1cfa38c9258fb 254 Gene3D G3DSA:1.20.1260.10 2 79 2.3E-15 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c12290 416a5a811ffbbb8382e1cfa38c9258fb 254 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 5 247 6.5E-104 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 Gene3D G3DSA:3.40.50.300 918 980 1.1E-15 T 11-10-2018 VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 13 284 2.7E-86 T 11-10-2018 IPR014059 Conjugative relaxase, N-terminal VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 SUPERFAMILY SSF55464 1 285 2.06E-82 T 11-10-2018 VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 SUPERFAMILY SSF52540 617 970 5.58E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 Pfam PF13604 AAA domain 445 695 7.2E-43 T 11-10-2018 VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 Gene3D G3DSA:2.30.30.940 853 917 1.1E-15 T 11-10-2018 VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 Pfam PF08751 TrwC relaxase 10 284 5.2E-87 T 11-10-2018 IPR014862 TrwC relaxase VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 SUPERFAMILY SSF52540 440 657 1.2E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02580 3fa22cfb714694a002642c1473cfc6e1 1037 Pfam PF13538 UvrD-like helicase C-terminal domain 916 963 2.3E-8 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 SMART SM00864 13 205 1.6E-112 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 328 3.2E-136 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 Gene3D G3DSA:3.40.50.1440 5 220 1.5E-79 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 Gene3D G3DSA:3.30.1330.20 221 327 1.3E-34 T 11-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 Pfam PF12327 FtsZ family, C-terminal domain 222 316 2.4E-36 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 SUPERFAMILY SSF52490 13 208 8.11E-69 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 5.2E-39 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 PRINTS PR00423 Cell division protein FtsZ signature 126 147 5.1E-52 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 PRINTS PR00423 Cell division protein FtsZ signature 212 233 5.1E-52 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 PRINTS PR00423 Cell division protein FtsZ signature 189 211 5.1E-52 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 PRINTS PR00423 Cell division protein FtsZ signature 98 118 5.1E-52 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 391 38.123 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 SUPERFAMILY SSF55307 204 320 9.61E-43 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 VV93_v1c05610 70de125df46cb9b5966a26c3266c15ee 404 SMART SM00865 207 325 1.4E-55 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 Gene3D G3DSA:2.170.130.10 48 178 1.8E-32 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 Gene3D G3DSA:2.40.170.20 179 721 1.0E-131 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 Pfam PF00593 TonB dependent receptor 248 719 2.1E-59 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 SUPERFAMILY SSF56935 38 721 6.99E-135 T 11-10-2018 VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 50 - T 11-10-2018 IPR010916 TonB box, conserved site VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 167 6.0E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c31690 820ec34de90ee72b6c706c35b7139db2 721 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 721 7.3E-117 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 SUPERFAMILY SSF141868 366 605 7.98E-70 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 Pfam PF00563 EAL domain 365 594 7.9E-56 T 11-10-2018 IPR001633 EAL domain VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 SMART SM00052 347 599 2.5E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 Gene3D G3DSA:3.20.20.450 350 607 1.5E-72 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 SMART SM00267 172 337 3.4E-28 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 183 336 2.1E-25 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 Pfam PF00990 Diguanylate cyclase, GGDEF domain 184 333 3.5E-28 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 SUPERFAMILY SSF55073 188 338 4.0E-33 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40750 d84d1462b74cc95405b611b62ad2f90d 613 Gene3D G3DSA:3.30.70.270 182 349 3.5E-35 T 11-10-2018 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SUPERFAMILY SSF50341 555 687 4.05E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Gene3D G3DSA:1.10.287.560 305 367 5.0E-17 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SMART SM00387 412 556 1.2E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SUPERFAMILY SSF47226 4 128 1.01E-30 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 415 555 1.0E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Gene3D G3DSA:2.40.50.180 579 642 1.4E-37 T 11-10-2018 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Gene3D G3DSA:3.30.565.10 368 555 3.8E-59 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SUPERFAMILY SSF47384 306 368 2.24E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 306 367 7.3E-16 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Pfam PF01627 Hpt domain 7 96 1.1E-17 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Gene3D G3DSA:2.30.30.40 556 683 1.4E-37 T 11-10-2018 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SUPERFAMILY SSF55874 371 554 3.14E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Gene3D G3DSA:1.20.120.160 1 144 5.4E-36 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SMART SM01231 304 367 4.1E-19 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SMART SM00073 5 102 8.0E-21 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 510 3.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 3.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 534 3.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 553 3.0E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 Pfam PF01584 CheW-like domain 563 688 3.0E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c45490 dacc9d67628a018382e09f2f61d4748b 704 SMART SM00260 548 687 1.1E-37 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c36120 3ec44618b971d42e262f5ae6a1044eda 467 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 22 461 4.4E-116 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c36120 3ec44618b971d42e262f5ae6a1044eda 467 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 467 2.7E-139 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c36120 3ec44618b971d42e262f5ae6a1044eda 467 PIRSF PIRSF002457 2 467 4.5E-138 T 11-10-2018 IPR030676 Citrate carrier CitT-related VV93_v1c11190 f67dc53443c6134e35583f79e95bc03c 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 36.017 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11190 f67dc53443c6134e35583f79e95bc03c 159 Pfam PF01967 MoaC family 15 150 1.9E-55 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11190 f67dc53443c6134e35583f79e95bc03c 159 Gene3D G3DSA:3.30.70.640 1 159 6.1E-70 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11190 f67dc53443c6134e35583f79e95bc03c 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 5.0E-72 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11190 f67dc53443c6134e35583f79e95bc03c 159 SUPERFAMILY SSF55040 11 155 3.4E-61 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Gene3D G3DSA:3.40.50.1000 482 719 1.3E-66 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 783 6.8E-161 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 274 785 1.4E-123 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 SUPERFAMILY SSF81653 318 402 3.14E-23 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Pfam PF00122 E1-E2 ATPase 318 478 2.6E-44 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00943 Copper-transporting ATPase signature 276 295 1.7E-5 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00943 Copper-transporting ATPase signature 296 314 1.7E-5 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00943 Copper-transporting ATPase signature 135 155 1.7E-5 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00943 Copper-transporting ATPase signature 659 676 1.7E-5 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 279 761 9.4E-73 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Gene3D G3DSA:3.30.70.100 90 173 2.0E-13 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Pfam PF00403 Heavy-metal-associated domain 96 154 1.6E-9 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 4 86 4.3E-27 T 11-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Gene3D G3DSA:2.70.150.20 292 407 2.3E-31 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 SUPERFAMILY SSF56784 500 781 4.71E-48 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 228 783 5.4E-153 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Gene3D G3DSA:3.40.1110.10 511 614 1.3E-66 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 SUPERFAMILY SSF81665 251 764 6.28E-11 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 SUPERFAMILY SSF55008 84 162 1.96E-17 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 ProSitePatterns PS01229 Hypothetical cof family signature 2. 681 703 - T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 Pfam PF00702 haloacid dehalogenase-like hydrolase 497 694 8.2E-30 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 503 509 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 681 700 5.1E-24 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 704 716 5.1E-24 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 353 367 5.1E-24 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 629 639 5.1E-24 T 11-10-2018 VV93_v1c15660 7cc9e3a5b1f4bd1e23df4db8eed766a8 789 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 501 515 5.1E-24 T 11-10-2018 VV93_v1c23310 7650205fc56aa4cbdb198fc7d98a09ea 607 SUPERFAMILY SSF53649 246 571 1.23E-55 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c23310 7650205fc56aa4cbdb198fc7d98a09ea 607 Pfam PF00884 Sulfatase 250 521 2.0E-32 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c23310 7650205fc56aa4cbdb198fc7d98a09ea 607 Gene3D G3DSA:3.40.720.10 241 536 2.2E-51 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c23310 7650205fc56aa4cbdb198fc7d98a09ea 607 Pfam PF11893 Domain of unknown function (DUF3413) 2 242 6.5E-59 T 11-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VV93_v1c23310 7650205fc56aa4cbdb198fc7d98a09ea 607 PIRSF PIRSF004950 1 606 1.3E-233 T 11-10-2018 IPR012159 Inner membrane protein YejM VV93_v1c18280 40076757e29f60192721ff812d094f28 410 SMART SM00471 168 304 1.2E-8 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c18280 40076757e29f60192721ff812d094f28 410 Gene3D G3DSA:1.10.3210.10 16 334 1.0E-67 T 11-10-2018 VV93_v1c18280 40076757e29f60192721ff812d094f28 410 SUPERFAMILY SSF109604 163 334 1.57E-31 T 11-10-2018 VV93_v1c18280 40076757e29f60192721ff812d094f28 410 Pfam PF01966 HD domain 173 294 1.2E-14 T 11-10-2018 IPR006674 HD domain VV93_v1c18280 40076757e29f60192721ff812d094f28 410 Pfam PF11871 Domain of unknown function (DUF3391) 16 140 2.7E-20 T 11-10-2018 IPR021812 Protein of unknown function DUF3391 VV93_v1c35520 6037045d93406cd7eb6b07e5bff999af 237 Pfam PF01925 Sulfite exporter TauE/SafE 10 230 2.1E-23 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 SUPERFAMILY SSF117457 317 489 3.4E-63 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 Pfam PF05683 Fumarase C-terminus 289 490 3.1E-83 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 284 1.2E-61 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 487 4.5E-50 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 Gene3D G3DSA:3.20.130.10 308 490 1.3E-61 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 PIRSF PIRSF001394 1 507 1.3E-213 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 VV93_v1c18430 40d51ce700459293dd7a7d72e869edd7 507 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 1.4E-97 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 VV93_v1c36290 1efec038c7e8b6411d55d9edcfc9b88e 717 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 10 711 5.3E-245 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK VV93_v1c36290 1efec038c7e8b6411d55d9edcfc9b88e 717 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 10 711 0.0 T 11-10-2018 IPR010019 Integral membrane protein, YccS VV93_v1c36290 1efec038c7e8b6411d55d9edcfc9b88e 717 Pfam PF12805 FUSC-like inner membrane protein yccS 68 347 3.8E-114 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal VV93_v1c36290 1efec038c7e8b6411d55d9edcfc9b88e 717 Pfam PF13515 Fusaric acid resistance protein-like 405 524 4.8E-23 T 11-10-2018 VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 Pfam PF01205 Uncharacterized protein family UPF0029 20 127 6.8E-27 T 11-10-2018 IPR001498 Impact, N-terminal VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 Pfam PF09186 Domain of unknown function (DUF1949) 143 198 2.8E-12 T 11-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 82 111 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 SUPERFAMILY SSF54980 139 201 1.58E-9 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 5 199 5.2E-70 T 11-10-2018 IPR015796 Impact family, bacterial/archaeal VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 Gene3D G3DSA:3.30.230.30 2 136 9.4E-51 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily VV93_v1c00190 f199b1b5b68a0a5c82a8e0cd84f99a0b 207 SUPERFAMILY SSF54211 5 134 1.9E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 SMART SM00267 467 633 6.2E-47 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Gene3D G3DSA:3.30.70.270 472 639 7.0E-50 T 11-10-2018 VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 475 631 1.4E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Pfam PF13426 PAS domain 259 352 0.053 T 11-10-2018 IPR000014 PAS domain VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Pfam PF13426 PAS domain 387 466 0.13 T 11-10-2018 IPR000014 PAS domain VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Pfam PF00990 Diguanylate cyclase, GGDEF domain 478 629 2.9E-40 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 SMART SM00304 180 233 0.0062 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Pfam PF17152 Periplasmic sensor domain 50 142 1.4E-6 T 11-10-2018 IPR033417 Periplasmic sensor domain CHASE8 VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Gene3D G3DSA:3.30.450.20 238 360 8.9E-7 T 11-10-2018 VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 Gene3D G3DSA:1.20.1480.50 144 237 3.2E-7 T 11-10-2018 VV93_v1c32710 4b38c62452185e4b2ebbc6853b7dd8df 639 SUPERFAMILY SSF55073 483 635 9.42E-42 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c19690 248ae111ec5a5e6d850697a9fcde1bd7 69 SUPERFAMILY SSF46955 7 59 2.75E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c19690 248ae111ec5a5e6d850697a9fcde1bd7 69 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 7 56 1.4E-21 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c25010 93b1e80d53bf13e8c1a22e6eb123f8c8 275 Pfam PF01578 Cytochrome C assembly protein 48 273 2.1E-45 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Gene3D G3DSA:3.30.200.210 41 666 0.0 T 11-10-2018 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Gene3D G3DSA:3.40.228.10 177 702 0.0 T 11-10-2018 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 SUPERFAMILY SSF53706 38 698 1.44E-198 T 11-10-2018 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 8.8E-28 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 63 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Gene3D G3DSA:2.40.40.20 705 828 6.5E-47 T 11-10-2018 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 42 94 1.9E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Gene3D G3DSA:3.40.50.740 98 623 0.0 T 11-10-2018 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Pfam PF00384 Molybdopterin oxidoreductase 98 570 1.4E-87 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.584 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 SUPERFAMILY SSF50692 688 828 5.18E-44 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VV93_v1c41190 c487ae51724ab22dcb5a437f7e752fe1 829 SMART SM00926 41 95 1.9E-13 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 Gene3D G3DSA:1.10.150.240 16 95 6.3E-61 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 Gene3D G3DSA:3.40.50.1000 5 218 6.3E-61 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 SUPERFAMILY SSF56784 2 222 6.94E-50 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 222 1.0E-79 T 11-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 22 194 2.7E-21 T 11-10-2018 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 195 7.5E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 98 189 1.1E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 1.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 1.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34480 219abedb1ae3f32749b0df7f62ecbc9e 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 1.5E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c07610 aca715e8489e12eadf615407f291e825 117 Hamap MF_00460 Protein RnfH [rnfH]. 8 98 25.694 T 11-10-2018 IPR005346 RnfH protein VV93_v1c07610 aca715e8489e12eadf615407f291e825 117 Pfam PF03658 RnfH family Ubiquitin 8 90 4.0E-34 T 11-10-2018 IPR005346 RnfH protein VV93_v1c07610 aca715e8489e12eadf615407f291e825 117 Gene3D G3DSA:3.10.20.280 2 92 1.8E-33 T 11-10-2018 IPR037021 RnfH superfamily VV93_v1c07610 aca715e8489e12eadf615407f291e825 117 SUPERFAMILY SSF54285 6 82 2.05E-26 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VV93_v1c40250 7eb60f3e996c22f8c39e8246a524b5a7 302 PRINTS PR00069 Aldo-keto reductase signature 145 162 2.9E-6 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VV93_v1c40250 7eb60f3e996c22f8c39e8246a524b5a7 302 PRINTS PR00069 Aldo-keto reductase signature 114 132 2.9E-6 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 VV93_v1c40250 7eb60f3e996c22f8c39e8246a524b5a7 302 SUPERFAMILY SSF51430 7 293 1.7E-68 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VV93_v1c40250 7eb60f3e996c22f8c39e8246a524b5a7 302 Gene3D G3DSA:3.20.20.100 1 302 1.8E-98 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VV93_v1c40250 7eb60f3e996c22f8c39e8246a524b5a7 302 Pfam PF00248 Aldo/keto reductase family 16 291 4.9E-59 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 SUPERFAMILY SSF50129 16 153 6.92E-26 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 SMART SM00829 15 328 7.3E-7 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 98 2.3E-7 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 Gene3D G3DSA:3.90.180.10 14 313 4.4E-66 T 11-10-2018 VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 Pfam PF13602 Zinc-binding dehydrogenase 209 328 3.0E-6 T 11-10-2018 VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 Gene3D G3DSA:3.40.50.720 129 296 4.4E-66 T 11-10-2018 VV93_v1c44470 24d58e3ebf701941cb3978fc260455a8 330 SUPERFAMILY SSF51735 123 289 8.09E-22 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 Gene3D G3DSA:3.30.70.990 9 94 4.9E-27 T 11-10-2018 IPR035570 UPF0234, N-terminal VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 Gene3D G3DSA:3.30.70.860 95 160 2.2E-30 T 11-10-2018 IPR035571 UPF0234-like, C-terminal VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 4.3E-63 T 11-10-2018 IPR007551 Protein of unknown function DUF520 VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 SUPERFAMILY SSF89963 2 85 1.44E-29 T 11-10-2018 IPR036183 YajQ-like superfamily VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 29.225 T 11-10-2018 IPR007551 Protein of unknown function DUF520 VV93_v1c15110 df2dc2af7e313a188c96f457ae174288 160 SUPERFAMILY SSF89963 88 160 1.83E-28 T 11-10-2018 IPR036183 YajQ-like superfamily VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Pfam PF08180 B melanoma antigen family 9 36 7.2E-13 T 11-10-2018 IPR012530 B melanoma antigen-like VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 239 320 1.6E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 SUPERFAMILY SSF50156 217 337 2.23E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 SMART SM00245 326 527 8.5E-67 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 530 662 7.0E-39 T 11-10-2018 IPR020992 Tail specific protease, C-terminal VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Gene3D G3DSA:2.30.42.10 236 320 4.2E-12 T 11-10-2018 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 SUPERFAMILY SSF52096 165 532 2.98E-72 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 547 2.2E-112 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Pfam PF03572 Peptidase family S41 356 525 1.5E-50 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 Gene3D G3DSA:3.90.226.10 324 545 2.4E-57 T 11-10-2018 VV93_v1c15220 13112f9ab7e94fcfa4fde8d745c9a22c 666 SMART SM00228 246 323 3.4E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c44290 d5393eef52aa298d78053ef3a0fc523c 178 Gene3D G3DSA:3.40.630.30 2 176 1.1E-29 T 11-10-2018 VV93_v1c44290 d5393eef52aa298d78053ef3a0fc523c 178 Pfam PF13508 Acetyltransferase (GNAT) domain 52 131 1.1E-9 T 11-10-2018 IPR000182 GNAT domain VV93_v1c44290 d5393eef52aa298d78053ef3a0fc523c 178 SUPERFAMILY SSF55729 1 137 6.52E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c08490 f3ebf12ed6738097df6cd4824bf4559d 156 Pfam PF07295 Zinc-ribbon containing domain 14 152 2.6E-47 T 11-10-2018 IPR009912 Zinc-ribbon containing domain VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 Gene3D G3DSA:3.40.190.10 103 288 4.1E-60 T 11-10-2018 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 Pfam PF03466 LysR substrate binding domain 91 289 7.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 Gene3D G3DSA:3.40.190.10 163 261 4.1E-60 T 11-10-2018 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 SUPERFAMILY SSF53850 92 294 6.7E-38 T 11-10-2018 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 SUPERFAMILY SSF46785 3 85 4.54E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.8E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 Gene3D G3DSA:1.10.10.10 7 95 2.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c08150 9e327cdb9c562b2cba980c003c810799 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 Gene3D G3DSA:3.40.190.10 163 271 6.5E-46 T 11-10-2018 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 Pfam PF03466 LysR substrate binding domain 94 294 1.5E-24 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 SUPERFAMILY SSF46785 9 113 9.95E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 SUPERFAMILY SSF53850 95 299 9.41E-26 T 11-10-2018 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 Gene3D G3DSA:1.10.10.10 6 99 1.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07270 fe4dae2bc4c695bce4fc0a32f7f9e6d3 300 Gene3D G3DSA:3.40.190.10 103 294 6.5E-46 T 11-10-2018 VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 SUPERFAMILY SSF54197 5 177 3.4E-72 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 347 5.7E-178 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 6 177 8.3E-69 T 11-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 Gene3D G3DSA:3.30.428.10 177 353 1.0E-67 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 152 169 - T 11-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 Gene3D G3DSA:3.30.428.10 45 176 2.1E-55 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 184 347 9.3E-63 T 11-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 SUPERFAMILY SSF54197 180 346 4.08E-51 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c44870 879c82f9efbe6776894879ffe10694ce 353 PIRSF PIRSF000808 1 343 2.4E-122 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 SUPERFAMILY SSF50677 226 414 3.14E-56 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 3.1E-79 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Gene3D G3DSA:3.40.50.620 33 564 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 617 649 1.8E-7 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 570 5.0E-9 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 172 1.4E-25 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Gene3D G3DSA:3.10.20.590 796 856 8.8E-24 T 11-10-2018 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 856 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 856 23.409 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Pfam PF08264 Anticodon-binding domain of tRNA 699 820 2.0E-16 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 484 502 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 522 544 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 555 565 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 7.2E-52 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Gene3D G3DSA:1.10.730.10 8 788 0.0 T 11-10-2018 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Gene3D G3DSA:3.90.740.10 227 413 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 SUPERFAMILY SSF47323 660 856 2.8E-34 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 SUPERFAMILY SSF52374 4 666 2.91E-147 T 11-10-2018 VV93_v1c08480 78c003f14d1fc3b33b87db7736cea3ac 857 Gene3D G3DSA:3.10.330.110 565 626 0.0 T 11-10-2018 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 SMART SM01185 69 123 3.5E-25 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 SUPERFAMILY SSF50104 2 64 3.51E-20 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Gene3D G3DSA:2.30.30.30 1 64 3.7E-25 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 1.4E-23 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Gene3D G3DSA:2.40.50.140 66 129 2.0E-28 T 11-10-2018 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 SUPERFAMILY SSF50249 130 187 4.45E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 9.2E-25 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 PIRSF PIRSF005901 2 188 7.9E-63 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 2.8E-22 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 187 2.9E-76 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Gene3D G3DSA:2.40.50.140 130 188 3.4E-27 T 11-10-2018 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.852 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 SMART SM00841 131 186 2.2E-31 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VV93_v1c28250 0f651e82fdceb4457c02a0594962846f 188 SUPERFAMILY SSF50249 70 128 4.71E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Pfam PF02142 MGS-like domain 19 132 8.1E-31 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Gene3D G3DSA:3.40.50.1380 1 200 1.0E-86 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 PIRSF PIRSF000414 1 530 3.6E-227 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 SMART SM00798 137 462 8.1E-218 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 530 1.2E-259 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Gene3D G3DSA:3.40.140.20 220 375 4.5E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 530 45.666 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Gene3D G3DSA:3.40.140.20 394 530 1.5E-60 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 SUPERFAMILY SSF52335 7 197 5.76E-71 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 461 6.3E-119 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 SMART SM00851 19 132 2.5E-59 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c28600 3bbcd9b8fde959a49e8a33b4cf640feb 530 SUPERFAMILY SSF53927 222 530 9.33E-131 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Gene3D G3DSA:1.10.520.10 434 723 1.3E-147 T 11-10-2018 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Gene3D G3DSA:1.10.520.10 28 432 1.1E-218 T 11-10-2018 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 SUPERFAMILY SSF48113 432 722 4.42E-112 T 11-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 11 723 0.0 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 2.4E-18 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 2.4E-18 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 2.4E-18 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 2.4E-18 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 2.4E-18 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Gene3D G3DSA:1.10.420.20 191 397 1.1E-218 T 11-10-2018 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 6.4E-52 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 6.4E-52 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 6.4E-52 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 6.4E-52 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 6.4E-52 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Pfam PF00141 Peroxidase 405 698 1.4E-37 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Pfam PF00141 Peroxidase 71 398 1.3E-52 T 11-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 SUPERFAMILY SSF48113 19 431 5.89E-153 T 11-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Gene3D G3DSA:1.10.420.10 578 699 1.3E-147 T 11-10-2018 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 Hamap MF_01961 Catalase-peroxidase [katG]. 7 723 39.98 T 11-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 VV93_v1c14140 2fb6623f0cf0180f13320b680d200ecc 723 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 11-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 Gene3D G3DSA:3.40.190.290 89 296 3.8E-65 T 11-10-2018 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 298 54.759 T 11-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 SUPERFAMILY SSF46785 4 113 1.4E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 SUPERFAMILY SSF53850 95 295 4.52E-21 T 11-10-2018 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 Pfam PF03466 LysR substrate binding domain 95 274 2.5E-12 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 1.3E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 Gene3D G3DSA:1.10.10.10 2 85 3.8E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c25610 5662f1d48d2410929b59934af3c346af 298 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 4 295 1.2E-106 T 11-10-2018 IPR017685 HTH-type transcriptional regulator ArgP VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 PIRSF PIRSF002181 1 142 1.3E-51 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.345 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 SUPERFAMILY SSF52161 1 140 9.42E-60 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 Gene3D G3DSA:3.90.1180.10 1 142 4.3E-63 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 Pfam PF00572 Ribosomal protein L13 15 138 4.5E-56 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.2E-64 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05350 d5e2ae1ce539f711d682c6bdf8534ef8 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 11-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 SMART SM00387 368 466 5.1E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 Gene3D G3DSA:3.30.565.10 328 463 5.2E-18 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 464 4.8E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 Gene3D G3DSA:1.10.287.130 270 327 5.2E-18 T 11-10-2018 VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 SUPERFAMILY SSF55874 351 467 1.15E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 SUPERFAMILY SSF47384 258 330 3.34E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 Pfam PF11884 Domain of unknown function (DUF3404) 6 262 1.1E-109 T 11-10-2018 IPR021821 Protein of unknown function DUF3404 VV93_v1c38170 c62fdc84762d59d9e71718c06ffb8ac3 471 SMART SM00388 263 330 5.9E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c10820 5b4ef0fe3fd8dcd7b9592bd02fb6f3b4 155 Pfam PF04074 Domain of unknown function (DUF386) 4 150 3.2E-37 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family VV93_v1c10820 5b4ef0fe3fd8dcd7b9592bd02fb6f3b4 155 Gene3D G3DSA:2.60.120.370 2 153 1.5E-35 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VV93_v1c10820 5b4ef0fe3fd8dcd7b9592bd02fb6f3b4 155 SUPERFAMILY SSF51197 3 151 7.14E-38 T 11-10-2018 VV93_v1c10820 5b4ef0fe3fd8dcd7b9592bd02fb6f3b4 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 2 151 6.9E-36 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 4.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 4.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 4.0E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 Gene3D G3DSA:1.10.287.950 206 537 4.4E-66 T 11-10-2018 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 501 1.2E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 SMART SM00304 205 259 9.5E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 SUPERFAMILY SSF58104 227 536 2.09E-68 T 11-10-2018 VV93_v1c17490 ce3346e80527d5b4a2339c88d351effd 537 SMART SM00283 274 535 7.0E-65 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 PIRSF PIRSF005650 4 241 1.4E-88 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.126 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 SUPERFAMILY SSF53633 7 240 1.31E-72 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 Gene3D G3DSA:3.40.1160.10 3 241 1.6E-76 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 4.6E-102 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 VV93_v1c22740 b8bf7f841ce7b7360b2f82a9f4ce2ea1 241 Pfam PF00696 Amino acid kinase family 11 219 6.7E-27 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 80 5.6E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 SUPERFAMILY SSF48008 100 237 2.12E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 Pfam PF07729 FCD domain 102 228 1.2E-21 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 SMART SM00345 21 80 6.3E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 SUPERFAMILY SSF46785 14 107 8.65E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 Gene3D G3DSA:1.10.10.10 12 83 2.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 3.9E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 3.9E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 Gene3D G3DSA:1.20.120.530 101 238 1.4E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c44590 6a4bb913e24d7ef840813ceb5917e8fe 263 SMART SM00895 102 229 9.5E-21 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SUPERFAMILY SSF54106 474 519 5.62E-10 T 11-10-2018 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Gene3D G3DSA:3.10.350.10 473 521 8.0E-13 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Pfam PF01476 LysM domain 476 518 6.9E-12 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Pfam PF01476 LysM domain 345 387 6.3E-11 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Pfam PF01476 LysM domain 419 461 4.2E-12 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SUPERFAMILY SSF54106 417 462 1.44E-10 T 11-10-2018 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SUPERFAMILY SSF54106 343 387 1.57E-10 T 11-10-2018 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SMART SM00257 344 387 1.0E-12 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SMART SM00257 475 519 1.0E-10 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SMART SM00257 418 462 2.0E-13 T 11-10-2018 IPR018392 LysM domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Pfam PF06474 MltD lipid attachment motif 1 19 5.9E-8 T 11-10-2018 IPR010511 Lytic murein transglycosylase D , lipid attachment domain VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Gene3D G3DSA:3.10.350.10 401 470 1.5E-14 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Gene3D G3DSA:3.10.350.10 341 395 1.6E-14 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Gene3D G3DSA:1.10.530.10 111 263 1.9E-29 T 11-10-2018 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 134 162 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 Pfam PF01464 Transglycosylase SLT domain 128 227 9.1E-23 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 VV93_v1c22540 b1d700b3b2d2677e71efe2e2c38e08e6 527 SUPERFAMILY SSF53955 113 268 1.8E-41 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 4.6E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 4.6E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 4.6E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 4.6E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 4.6E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 1.0E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 1.0E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 1.0E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 SUPERFAMILY SSF51735 9 242 1.01E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 Gene3D G3DSA:3.40.50.720 2 246 1.2E-72 T 11-10-2018 VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 178 0.0061 T 11-10-2018 VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c12130 0f67260f66722c2c51bdd61a3b638971 247 Pfam PF00106 short chain dehydrogenase 13 208 5.8E-53 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 PRINTS PR01438 Universal stress protein signature 2 20 9.5E-12 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 PRINTS PR01438 Universal stress protein signature 102 114 9.5E-12 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 PRINTS PR01438 Universal stress protein signature 120 142 9.5E-12 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 Gene3D G3DSA:3.40.50.620 1 142 1.5E-37 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 Pfam PF00582 Universal stress protein family 1 142 1.1E-32 T 11-10-2018 IPR006016 UspA VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 PIRSF PIRSF006276 1 145 6.1E-21 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c04310 c458952e90dc4cd0483e38fa427438a0 145 SUPERFAMILY SSF52402 2 144 2.85E-36 T 11-10-2018 VV93_v1c03620 daaa3ab88a31c0ee04775d685cefcddc 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 7.4E-44 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03620 daaa3ab88a31c0ee04775d685cefcddc 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 4.9E-43 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03620 daaa3ab88a31c0ee04775d685cefcddc 117 SUPERFAMILY SSF53137 3 115 1.66E-51 T 11-10-2018 VV93_v1c03620 daaa3ab88a31c0ee04775d685cefcddc 117 Gene3D G3DSA:3.30.420.100 1 117 1.6E-43 T 11-10-2018 VV93_v1c03620 daaa3ab88a31c0ee04775d685cefcddc 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.753 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 SUPERFAMILY SSF100920 384 537 4.58E-52 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 SUPERFAMILY SSF53067 20 196 3.37E-50 T 11-10-2018 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Gene3D G3DSA:3.30.420.40 23 374 6.9E-110 T 11-10-2018 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 152 172 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 466 482 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 211 221 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 385 404 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 48 60 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.0E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Gene3D G3DSA:3.30.420.40 194 361 6.9E-110 T 11-10-2018 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 SUPERFAMILY SSF53067 200 377 5.73E-48 T 11-10-2018 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Gene3D G3DSA:2.60.34.10 379 519 7.9E-50 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 7.0E-266 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 617 46.279 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Gene3D G3DSA:3.90.640.10 238 311 6.9E-110 T 11-10-2018 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Pfam PF00012 Hsp70 protein 22 601 4.6E-187 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 SUPERFAMILY SSF100934 504 615 6.08E-34 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VV93_v1c07050 d7dc4d462f96dfcfe32f5bb6924f94b2 617 Gene3D G3DSA:1.20.1270.10 520 616 6.8E-26 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82866 299 500 1.7E-47 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:1.20.1640.10 513 1027 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Pfam PF00873 AcrB/AcrD/AcrF family 3 1030 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.70.1430 39 820 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.70.1440 672 869 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82866 808 1035 1.7E-43 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.70.1430 567 671 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82693 565 674 2.3E-21 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82693 136 332 7.5E-22 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82693 39 132 8.89E-26 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1034 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 11-10-2018 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 1.1E-88 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82714 725 809 1.23E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c40200 f8be2e866911492f1e4107d73ccc46d4 1050 SUPERFAMILY SSF82714 184 273 4.32E-23 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 371 389 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 152 177 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 316 338 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 178 201 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 270 289 1.9E-95 T 11-10-2018 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 PIRSF PIRSF004557 10 442 1.4E-121 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 Pfam PF00344 SecY translocase 76 418 5.6E-118 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 Gene3D G3DSA:1.10.3370.10 10 430 1.9E-160 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 SUPERFAMILY SSF103491 15 425 7.06E-131 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 434 29.188 T 11-10-2018 IPR026593 Protein translocase subunit SecY VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 ProSitePatterns PS00756 Protein secY signature 2. 171 188 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c03660 bdad69aaaab1403a5c9fcb34ac7b740f 444 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 430 5.7E-134 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 SMART SM00481 4 73 5.3E-4 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Pfam PF01336 OB-fold nucleic acid binding domain 934 1003 1.3E-7 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Gene3D G3DSA:3.20.20.140 2 247 1.5E-42 T 11-10-2018 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 3 1024 13.51 T 11-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Pfam PF14579 Helix-hairpin-helix motif 768 854 2.7E-11 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 4 969 1.3E-156 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Pfam PF02811 PHP domain 8 101 4.5E-9 T 11-10-2018 IPR004013 PHP domain GO:0003824 VV93_v1c12100 3733b53ea9e2120f9fff5f3b740767fc 1024 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 270 694 4.3E-145 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 SUPERFAMILY SSF58104 236 518 3.01E-70 T 11-10-2018 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 383 412 3.1E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 270 299 3.1E-5 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 SMART SM00086 80 121 0.0037 T 11-10-2018 IPR001610 PAC motif VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 Gene3D G3DSA:1.10.287.950 226 518 5.0E-65 T 11-10-2018 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 Pfam PF08447 PAS fold 31 115 2.5E-20 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 SMART SM00283 256 517 1.6E-64 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 300 483 1.9E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 SUPERFAMILY SSF55785 22 115 5.03E-26 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 111 2.7E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c35820 62ab7249fa9476b7715d8a4cfb1e76e5 519 Gene3D G3DSA:3.30.450.20 15 117 1.7E-25 T 11-10-2018 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 SUPERFAMILY SSF51246 331 444 9.94E-44 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 SMART SM00878 336 441 6.3E-65 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.9E-43 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 446 1.5E-243 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Gene3D G3DSA:3.30.1490.20 131 203 2.4E-156 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Gene3D G3DSA:3.30.470.20 86 433 2.4E-156 T 11-10-2018 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 SUPERFAMILY SSF56059 83 346 9.9E-70 T 11-10-2018 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Gene3D G3DSA:3.40.50.20 1 85 5.7E-34 T 11-10-2018 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 SUPERFAMILY SSF52440 1 113 4.6E-46 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 8.9E-38 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c28540 86c0f566d08f35c10d9213dbb913a6b8 448 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 4.4E-83 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 PIRSF PIRSF001423 1 563 1.0E-294 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 TIGRFAM TIGR01228 hutU: urocanate hydratase 15 556 2.0E-291 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Pfam PF17392 Urocanase C-terminal domain 354 547 2.1E-91 T 11-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Gene3D G3DSA:3.40.1770.10 22 544 1.8E-257 T 11-10-2018 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Hamap MF_00577 Urocanate hydratase [hutU]. 2 558 49.321 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 SUPERFAMILY SSF111326 11 557 1.57E-258 T 11-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 ProSitePatterns PS01233 Urocanase signature. 444 459 - T 11-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Pfam PF17391 Urocanase N-terminal domain 17 143 2.1E-62 T 11-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Pfam PF01175 Urocanase Rossmann-like domain 146 351 9.7E-85 T 11-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17110 5480ce2e2867399f29063837ce9e00e8 565 Gene3D G3DSA:3.40.50.10730 147 351 1.8E-257 T 11-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 Pfam PF00117 Glutamine amidotransferase class-I 8 202 2.1E-18 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 6 203 7.2E-69 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 PIRSF PIRSF000495 4 204 1.2E-64 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 Gene3D G3DSA:3.40.50.880 2 204 2.0E-73 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 5 204 33.561 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 VV93_v1c12670 89a104763fec5c31109c20271decb40f 204 SUPERFAMILY SSF52317 5 203 8.56E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c36240 17dee2a9433dcd825784c74c44c00b53 82 Gene3D G3DSA:1.20.1280.290 27 76 2.5E-6 T 11-10-2018 VV93_v1c36240 17dee2a9433dcd825784c74c44c00b53 82 ProDom PD058023 TRANSMEMBRANE SO1069 MEMBRANE VCA0743 SO4196 VVA0623 VPA0666 HI1736 PM0424 3 73 4.0E-34 T 11-10-2018 IPR020137 Uncharacterised protein family HI1736 VV93_v1c36240 17dee2a9433dcd825784c74c44c00b53 82 Pfam PF10688 Bacterial inner membrane protein 4 73 3.5E-8 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV VV93_v1c42340 b0881b2d3bf54dbe6a260fdfdc8a1d69 455 Gene3D G3DSA:1.20.1600.10 34 439 9.9E-40 T 11-10-2018 VV93_v1c42340 b0881b2d3bf54dbe6a260fdfdc8a1d69 455 Pfam PF02321 Outer membrane efflux protein 258 436 1.5E-14 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c42340 b0881b2d3bf54dbe6a260fdfdc8a1d69 455 Pfam PF02321 Outer membrane efflux protein 42 221 3.1E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c42340 b0881b2d3bf54dbe6a260fdfdc8a1d69 455 SUPERFAMILY SSF56954 2 438 5.89E-51 T 11-10-2018 VV93_v1c35890 d15714a6e024293b77c8e2e8cb35326f 377 Gene3D G3DSA:3.60.21.10 1 265 5.6E-78 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c35890 d15714a6e024293b77c8e2e8cb35326f 377 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 244 2.0E-53 T 11-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 VV93_v1c35890 d15714a6e024293b77c8e2e8cb35326f 377 Pfam PF00149 Calcineurin-like phosphoesterase 1 218 9.4E-15 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c35890 d15714a6e024293b77c8e2e8cb35326f 377 SUPERFAMILY SSF56300 1 320 1.97E-58 T 11-10-2018 VV93_v1c35890 d15714a6e024293b77c8e2e8cb35326f 377 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 268 353 3.2E-10 T 11-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain VV93_v1c29590 0986226045d40a547aee5614c76bf702 293 SUPERFAMILY SSF69593 15 289 2.22E-26 T 11-10-2018 VV93_v1c29590 0986226045d40a547aee5614c76bf702 293 SMART SM00563 85 227 4.4E-20 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c29590 0986226045d40a547aee5614c76bf702 293 Pfam PF01553 Acyltransferase 73 226 1.2E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c43150 ddd4b1a0e2f74eb0ff42c292684b5b0e 198 Pfam PF00924 Mechanosensitive ion channel 78 174 1.4E-9 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c43150 ddd4b1a0e2f74eb0ff42c292684b5b0e 198 Gene3D G3DSA:2.30.30.60 124 175 1.0E-5 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c43150 ddd4b1a0e2f74eb0ff42c292684b5b0e 198 SUPERFAMILY SSF50182 109 175 3.92E-11 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 SUPERFAMILY SSF51445 32 411 1.9E-62 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 SMART SM00642 24 382 1.2E-41 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 Pfam PF00128 Alpha amylase, catalytic domain 48 255 1.2E-14 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 SUPERFAMILY SSF51011 404 464 4.68E-5 T 11-10-2018 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 PRINTS PR00110 Alpha-amylase signature 240 258 4.4E-15 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 PRINTS PR00110 Alpha-amylase signature 98 109 4.4E-15 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 PRINTS PR00110 Alpha-amylase signature 211 222 4.4E-15 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 PRINTS PR00110 Alpha-amylase signature 65 82 4.4E-15 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 PRINTS PR00110 Alpha-amylase signature 306 318 4.4E-15 T 11-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 VV93_v1c38970 a1d386489715b9d3373446fc61d6ea76 466 Gene3D G3DSA:3.20.20.80 20 387 4.2E-83 T 11-10-2018 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SUPERFAMILY SSF52210 295 455 3.53E-40 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SUPERFAMILY SSF56059 492 698 9.49E-31 T 11-10-2018 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.30.470.20 491 700 1.2E-55 T 11-10-2018 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SUPERFAMILY SSF55729 732 876 6.69E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.30.1490.20 509 586 1.2E-55 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Pfam PF13380 CoA binding domain 12 136 1.3E-22 T 11-10-2018 IPR003781 CoA-binding GO:0048037 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SMART SM00881 7 102 2.1E-23 T 11-10-2018 IPR003781 CoA-binding GO:0048037 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Pfam PF13549 ATP-grasp domain 486 704 2.1E-66 T 11-10-2018 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.40.50.261 132 291 6.8E-46 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.40.50.261 293 463 6.9E-52 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Pfam PF00583 Acetyltransferase (GNAT) family 771 873 3.8E-10 T 11-10-2018 IPR000182 GNAT domain VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SUPERFAMILY SSF51735 3 141 5.91E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.40.50.720 1 131 3.9E-33 T 11-10-2018 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 153 288 2.3E-44 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 SUPERFAMILY SSF52210 131 290 3.4E-35 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c37730 08f585740863ad1085380aa9d3e580d9 892 Gene3D G3DSA:3.40.630.30 727 892 8.1E-41 T 11-10-2018 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 715 0.0 T 11-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 628 711 2.8E-5 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 593 1.3E-25 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 716 52.41 T 11-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Gene3D G3DSA:1.10.1040.50 498 710 1.9E-73 T 11-10-2018 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Gene3D G3DSA:3.40.50.720 314 497 4.6E-65 T 11-10-2018 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 SUPERFAMILY SSF48179 625 715 1.19E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 SUPERFAMILY SSF51735 314 496 7.3E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 209 2.4E-40 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Gene3D G3DSA:3.90.226.10 1 312 1.8E-90 T 11-10-2018 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 SUPERFAMILY SSF52096 2 304 8.89E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 SUPERFAMILY SSF48179 496 607 1.02E-28 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c00180 c9c450ab6ae0fb8b118332b670a26027 723 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 8.6E-59 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c09490 677a666731a8bccb0d3c7de5a1c10e87 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 251 2.1E-68 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VV93_v1c09490 677a666731a8bccb0d3c7de5a1c10e87 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 238 3.1E-59 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VV93_v1c09490 677a666731a8bccb0d3c7de5a1c10e87 252 SUPERFAMILY SSF102705 1 251 2.35E-82 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily VV93_v1c09490 677a666731a8bccb0d3c7de5a1c10e87 252 Gene3D G3DSA:3.40.1390.30 14 237 7.0E-82 T 11-10-2018 VV93_v1c09490 677a666731a8bccb0d3c7de5a1c10e87 252 Gene3D G3DSA:3.40.1390.30 97 223 7.0E-82 T 11-10-2018 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 Gene3D G3DSA:3.20.20.10 13 220 2.0E-132 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 34 44 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 SUPERFAMILY SSF50621 230 359 8.72E-48 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 Hamap MF_01201 Alanine racemase. 4 360 35.359 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 Pfam PF00842 Alanine racemase, C-terminal domain 236 359 3.6E-43 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 Gene3D G3DSA:2.40.37.10 11 355 2.0E-132 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 Pfam PF01168 Alanine racemase, N-terminal domain 11 222 5.1E-69 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 342 355 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 29 45 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 290 307 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 269 284 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 195 222 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 123 135 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 158 169 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 252 267 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 PRINTS PR00992 Alanine racemase signature 63 81 1.4E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 SMART SM01005 236 360 6.9E-70 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 TIGRFAM TIGR00492 alr: alanine racemase 6 359 4.4E-129 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c27070 9a6809eac87f0733adea01a8239b9c05 361 SUPERFAMILY SSF51419 11 237 2.62E-69 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 SUPERFAMILY SSF53901 1 251 2.47E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.5E-46 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 Gene3D G3DSA:3.40.47.10 1 253 1.3E-68 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 SMART SM00825 Beta-ketoacyl synthase 4 403 2.0E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 358 1.5E-28 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 Gene3D G3DSA:3.40.47.10 258 401 8.0E-51 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21320 1dc1c3598dfc7e2979b08837f52abcb1 403 SUPERFAMILY SSF53901 213 401 1.19E-62 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c05730 99dfa815afe9da66c1afdf171dd58311 289 Gene3D G3DSA:3.40.50.1980 157 284 1.2E-26 T 11-10-2018 VV93_v1c05730 99dfa815afe9da66c1afdf171dd58311 289 Pfam PF01497 Periplasmic binding protein 40 261 5.4E-23 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain VV93_v1c05730 99dfa815afe9da66c1afdf171dd58311 289 SUPERFAMILY SSF53807 36 282 6.28E-57 T 11-10-2018 VV93_v1c05730 99dfa815afe9da66c1afdf171dd58311 289 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 18 286 51.391 T 11-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 VV93_v1c05730 99dfa815afe9da66c1afdf171dd58311 289 Gene3D G3DSA:3.40.50.1980 37 152 1.3E-32 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.40.50.300 478 990 4.5E-235 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Pfam PF03461 TRCF domain 1010 1101 4.1E-28 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SMART SM00490 826 910 5.3E-19 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SMART SM00487 600 790 2.5E-34 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.40.50.11180 26 335 8.9E-119 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:2.30.30.840 483 541 4.5E-235 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.90.1150.50 1004 1150 3.8E-45 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Pfam PF00271 Helicase conserved C-terminal domain 806 909 4.7E-16 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1081 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Pfam PF00270 DEAD/DEAH box helicase 605 765 5.1E-21 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF52540 524 783 4.76E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF52540 782 990 5.59E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF143517 998 1146 8.76E-43 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.40.50.300 542 781 4.5E-235 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SMART SM00982 1008 1108 7.2E-47 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SMART SM01058 479 576 6.7E-50 T 11-10-2018 IPR003711 CarD-like/TRCF domain VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 28 1108 27.872 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF141259 470 548 7.98E-24 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.40.50.11140 356 453 3.0E-34 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Gene3D G3DSA:3.30.2060.10 130 215 8.9E-119 T 11-10-2018 VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF52540 11 340 7.97E-99 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 SUPERFAMILY SSF52540 352 466 7.97E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20730 638904f02c432b85c814ad4de9b320c8 1153 Pfam PF02559 CarD-like/TRCF domain 480 575 8.3E-25 T 11-10-2018 IPR003711 CarD-like/TRCF domain VV93_v1c22140 1bc35b704c2cb3e2deebab021ac09af9 218 SUPERFAMILY SSF53041 2 145 3.14E-15 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VV93_v1c22140 1bc35b704c2cb3e2deebab021ac09af9 218 Gene3D G3DSA:3.40.50.1390 1 156 1.1E-17 T 11-10-2018 VV93_v1c22140 1bc35b704c2cb3e2deebab021ac09af9 218 SMART SM00857 1 146 2.2E-17 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VV93_v1c22140 1bc35b704c2cb3e2deebab021ac09af9 218 Pfam PF00239 Resolvase, N terminal domain 2 144 5.3E-18 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 Gene3D G3DSA:3.40.50.720 2 167 4.1E-40 T 11-10-2018 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 PIRSF PIRSF000103 1 293 5.9E-57 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 SUPERFAMILY SSF51735 6 167 1.2E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 Gene3D G3DSA:1.10.1040.10 168 292 1.6E-38 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 SUPERFAMILY SSF48179 168 291 5.78E-36 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 9 22 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 169 288 5.2E-32 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VV93_v1c19550 4527ca9ebca6028d1d4d27d1c9f3eb35 302 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 165 3.4E-38 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 Gene3D G3DSA:3.40.50.1010 1 166 1.5E-51 T 11-10-2018 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 SUPERFAMILY SSF47807 164 254 2.69E-17 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 159 7.7E-32 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 SMART SM00475 3 254 1.0E-64 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 SMART SM00279 167 202 2.1E-8 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 Gene3D G3DSA:1.10.150.20 167 255 1.1E-17 T 11-10-2018 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 165 255 8.8E-19 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 255 46.176 T 11-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 VV93_v1c08200 a1220bbda89dbe1a4e760372c4e1f52d 259 SUPERFAMILY SSF88723 4 164 8.83E-39 T 11-10-2018 IPR029060 PIN-like domain superfamily VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 Gene3D G3DSA:1.10.1660.10 1 130 1.6E-35 T 11-10-2018 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 Pfam PF09278 MerR, DNA binding 47 109 2.5E-17 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 132 1.6E-65 T 11-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 SMART SM00422 2 71 1.4E-28 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 Pfam PF00376 MerR family regulatory protein 4 40 5.1E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 6.8E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 6.8E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 6.8E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c28590 f9305061ee877795d7bbb06bf7d6c2e6 132 SUPERFAMILY SSF46955 2 121 1.68E-33 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c10140 8dd2d08057b1d9f3960f023716a56447 307 SUPERFAMILY SSF161098 68 294 2.35E-47 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c10140 8dd2d08057b1d9f3960f023716a56447 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 294 1.4E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c10140 8dd2d08057b1d9f3960f023716a56447 307 Gene3D G3DSA:1.10.3720.10 64 305 8.5E-56 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 515 542 1.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 544 573 1.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 1.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 SUPERFAMILY SSF58104 378 677 1.44E-64 T 11-10-2018 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 Pfam PF17201 Cache 3/Cache 2 fusion domain 40 323 3.3E-64 T 11-10-2018 IPR033462 Cache 3/Cache 2 fusion domain VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 Gene3D G3DSA:1.10.287.950 348 678 1.5E-67 T 11-10-2018 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 SMART SM00283 417 678 1.5E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 SUPERFAMILY SSF103190 115 211 1.26E-12 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 490 644 3.5E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c10630 529ff1095a6fab80bac3b9f057e305a1 678 Gene3D G3DSA:3.30.450.20 180 328 2.3E-12 T 11-10-2018 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 7 389 3.9E-171 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 388 7.8E-117 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 SUPERFAMILY SSF53383 21 388 1.48E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 199 213 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 Gene3D G3DSA:3.40.640.10 3 255 1.0E-79 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 PIRSF PIRSF001434 1 391 1.1E-124 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c13100 58e18ab1053fa47d37e65acdd4bb830f 402 Gene3D G3DSA:3.90.1150.10 256 390 1.7E-39 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 Gene3D G3DSA:3.90.1150.10 4 336 1.7E-120 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 6 343 4.9E-118 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 206 215 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 Pfam PF00155 Aminotransferase class I and II 44 337 1.2E-55 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 SUPERFAMILY SSF53383 12 343 6.88E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 Gene3D G3DSA:3.40.640.10 49 253 1.7E-120 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c12650 8b4a24e3727023f58ca18ca5b0d5509c 346 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 345 53.32 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Pfam PF00664 ABC transporter transmembrane region 145 411 5.7E-46 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 SUPERFAMILY SSF90123 130 441 2.49E-63 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 19 692 1.4E-241 T 11-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 SUPERFAMILY SSF52540 448 691 2.36E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Pfam PF03412 Peptidase C39 family 23 123 1.7E-5 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 SMART SM00382 481 667 2.8E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Gene3D G3DSA:1.20.1560.10 129 443 4.5E-69 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 ProSitePatterns PS00211 ABC transporters family signature. 593 607 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Gene3D G3DSA:3.90.70.10 7 128 9.7E-11 T 11-10-2018 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Gene3D G3DSA:3.40.50.300 446 701 1.8E-90 T 11-10-2018 VV93_v1c39760 ae8441ebf3e79335fae64ba909d1da14 701 Pfam PF00005 ABC transporter 473 621 4.8E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Pfam PF07549 SecD/SecF GG Motif 115 141 3.6E-7 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Gene3D G3DSA:1.20.1640.10 451 603 7.8E-8 T 11-10-2018 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.4E-37 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Gene3D G3DSA:3.30.70.3400 222 440 1.6E-50 T 11-10-2018 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Pfam PF02355 Protein export membrane protein 436 597 5.3E-19 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 348 597 1.3E-82 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 SUPERFAMILY SSF82866 413 609 4.32E-45 T 11-10-2018 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Gene3D G3DSA:3.30.1360.200 281 434 1.6E-50 T 11-10-2018 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 604 2.1E-151 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 618 47.212 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 PRINTS PR00702 Acriflavin resistance protein family signature 581 604 3.6E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 PRINTS PR00702 Acriflavin resistance protein family signature 452 475 3.6E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c06940 fc06ee1bd44288a4fa60aac6ae7d5eee 618 PRINTS PR00702 Acriflavin resistance protein family signature 506 530 3.6E-5 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c11720 1fff55bcf3a0c3d4d89beb307a1623b8 318 Gene3D G3DSA:1.20.1630.10 7 227 1.1E-14 T 11-10-2018 VV93_v1c11720 1fff55bcf3a0c3d4d89beb307a1623b8 318 Pfam PF03916 Polysulphide reductase, NrfD 6 317 3.9E-75 T 11-10-2018 IPR005614 NrfD family VV93_v1c11720 1fff55bcf3a0c3d4d89beb307a1623b8 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 6 318 2.4E-149 T 11-10-2018 IPR017566 NrfD VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 SMART SM00636 523 825 1.7E-4 T 11-10-2018 IPR011583 Chitinase II GO:0008061 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 ProSitePatterns PS01095 Chitinases family 18 active site. 637 645 - T 11-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 SUPERFAMILY SSF51055 19 78 8.63E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Pfam PF00704 Glycosyl hydrolases family 18 525 825 2.9E-26 T 11-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:2.60.40.10 84 173 2.6E-21 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:2.60.40.10 178 271 2.5E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:2.60.40.10 335 427 3.4E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 SMART SM00495 277 326 0.02 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 SMART SM00495 28 74 1.1E-10 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:3.20.20.80 522 842 1.5E-76 T 11-10-2018 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 SUPERFAMILY SSF51445 522 833 6.88E-49 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:2.10.10.20 8 79 3.0E-10 T 11-10-2018 VV93_v1c22960 4caed3320098a5dd92b54b9a9572b28c 846 Gene3D G3DSA:2.60.40.10 429 521 3.7E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 SUPERFAMILY SSF48208 78 566 6.8E-95 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 SUPERFAMILY SSF81296 2 90 4.13E-14 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 Gene3D G3DSA:2.60.40.10 1 93 1.3E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 Gene3D G3DSA:1.50.10.10 94 572 3.0E-225 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 Pfam PF02927 Cellulase N-terminal ig-like domain 5 83 7.1E-9 T 11-10-2018 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 VV93_v1c24520 96b8e41ea90bb6549ce78553d1be7b99 573 Pfam PF00759 Glycosyl hydrolase family 9 98 500 8.6E-24 T 11-10-2018 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VV93_v1c25920 92c1c59b832d5cc17ac3490433646b3e 379 Pfam PF01464 Transglycosylase SLT domain 211 332 1.3E-27 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 VV93_v1c25920 92c1c59b832d5cc17ac3490433646b3e 379 Gene3D G3DSA:1.10.530.10 190 371 4.4E-49 T 11-10-2018 VV93_v1c25920 92c1c59b832d5cc17ac3490433646b3e 379 SUPERFAMILY SSF53955 183 371 3.38E-37 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c25920 92c1c59b832d5cc17ac3490433646b3e 379 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 228 256 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VV93_v1c25920 92c1c59b832d5cc17ac3490433646b3e 379 Pfam PF11873 Domain of unknown function (DUF3393) 6 206 3.5E-79 T 11-10-2018 IPR024570 Murein transglycosylase-C, N-terminal VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 ProSitePatterns PS00761 Signal peptidases I signature 3. 237 250 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 6.0E-27 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 6.0E-27 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 232 251 6.0E-27 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 Gene3D G3DSA:2.10.109.10 78 272 7.0E-75 T 11-10-2018 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 Gene3D G3DSA:2.170.230.10 155 231 7.0E-75 T 11-10-2018 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 Pfam PF00717 Peptidase S24-like 86 166 1.8E-21 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 SUPERFAMILY SSF51306 78 298 3.56E-69 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 Pfam PF10502 Signal peptidase, peptidase S26 209 269 1.8E-8 T 11-10-2018 IPR019533 Peptidase S26 VV93_v1c25410 d2ce172a74c15c2121baa886d3ca5604 299 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 272 5.0E-47 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 SMART SM00116 275 322 5.0 T 11-10-2018 IPR000644 CBS domain VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 SMART SM00116 210 258 0.0077 T 11-10-2018 IPR000644 CBS domain VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 313 2.9E-113 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 SUPERFAMILY SSF53697 9 316 9.79E-69 T 11-10-2018 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 Pfam PF01380 SIS domain 41 172 7.3E-32 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 Gene3D G3DSA:3.10.580.10 196 320 1.5E-44 T 11-10-2018 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 Gene3D G3DSA:3.40.50.10490 6 195 5.9E-66 T 11-10-2018 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 PIRSF PIRSF004692 1 323 1.5E-130 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 Pfam PF00571 CBS domain 203 258 5.7E-5 T 11-10-2018 IPR000644 CBS domain VV93_v1c04210 b1f4e83fd4fd197ffdba3c5546ac6c14 323 Pfam PF00571 CBS domain 268 320 2.1E-5 T 11-10-2018 IPR000644 CBS domain VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 SUPERFAMILY SSF103190 92 177 1.57E-8 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 SMART SM00304 359 405 110.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 SMART SM00304 298 352 4.2E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Pfam PF02743 Cache domain 46 260 6.5E-31 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Gene3D G3DSA:3.30.450.20 67 171 6.8E-43 T 11-10-2018 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 SUPERFAMILY SSF58104 320 629 2.22E-74 T 11-10-2018 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Gene3D G3DSA:1.10.287.950 299 629 3.5E-70 T 11-10-2018 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 465 492 1.4E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 494 523 1.4E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 276 296 1.4E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 SMART SM00283 367 628 2.5E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 439 595 6.3E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Gene3D G3DSA:3.30.450.20 57 271 6.8E-43 T 11-10-2018 VV93_v1c33540 ad5657aedd6c4f4d5ecba28a4b02280f 629 Pfam PF00672 HAMP domain 307 348 1.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 8.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 8.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 8.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 SUPERFAMILY SSF53850 92 291 2.35E-28 T 11-10-2018 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 SUPERFAMILY SSF46785 3 83 1.68E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c34640 946510afe30bec5b82669b511be868af 292 Gene3D G3DSA:3.40.190.10 102 285 9.2E-42 T 11-10-2018 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 6.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 Gene3D G3DSA:1.10.10.10 6 95 5.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c34640 946510afe30bec5b82669b511be868af 292 Gene3D G3DSA:3.40.190.10 162 260 9.2E-42 T 11-10-2018 VV93_v1c34640 946510afe30bec5b82669b511be868af 292 Pfam PF03466 LysR substrate binding domain 90 287 1.8E-27 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Pfam PF12705 PD-(D/E)XK nuclease superfamily 964 1162 5.5E-8 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Gene3D G3DSA:1.10.486.10 587 735 7.1E-159 T 11-10-2018 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Gene3D G3DSA:3.40.50.300 446 852 7.1E-159 T 11-10-2018 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Gene3D G3DSA:3.40.50.300 10 437 2.4E-160 T 11-10-2018 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 SUPERFAMILY SSF52540 16 848 2.42E-109 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 SUPERFAMILY SSF52980 909 1190 5.9E-84 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Gene3D G3DSA:1.10.3170.10 158 350 2.4E-160 T 11-10-2018 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Gene3D G3DSA:3.90.320.10 897 1194 1.9E-99 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 437 5.3E-60 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 11 1188 0.0 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Pfam PF13361 UvrD-like helicase C-terminal domain 442 816 1.1E-19 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VV93_v1c23290 4ee619a912986d52de05c33f70876dd0 1206 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1189 22.872 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 VV93_v1c42320 e91954487bbfcdd63bcd86a4e228ff8d 260 SMART SM00849 17 216 6.0E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c42320 e91954487bbfcdd63bcd86a4e228ff8d 260 Gene3D G3DSA:3.60.15.10 5 237 7.5E-33 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c42320 e91954487bbfcdd63bcd86a4e228ff8d 260 Pfam PF00753 Metallo-beta-lactamase superfamily 20 216 2.5E-18 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c42320 e91954487bbfcdd63bcd86a4e228ff8d 260 SUPERFAMILY SSF56281 6 239 7.6E-38 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 7 487 2.4E-202 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 194 487 1.4E-114 T 11-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 Gene3D G3DSA:3.30.360.10 181 489 3.0E-124 T 11-10-2018 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 11 192 3.8E-63 T 11-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 7 488 84.376 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 Gene3D G3DSA:3.40.50.720 5 180 1.1E-58 T 11-10-2018 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 SUPERFAMILY SSF51735 4 195 2.23E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PIRSF PIRSF000110 2 490 1.7E-176 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 224 241 3.4E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 333 359 3.4E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 242 258 3.4E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 148 161 3.4E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 172 200 3.4E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 SUPERFAMILY SSF55347 182 490 4.58E-113 T 11-10-2018 VV93_v1c14810 bb1b6f4c2a5d6b7b7f7df41bd963d7f0 501 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 182 188 - T 11-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 SMART SM00495 381 427 5.0 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 SMART SM00495 332 378 2.2E-4 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 SUPERFAMILY SSF51055 383 426 2.94E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 Gene3D G3DSA:2.10.10.90 333 427 1.3E-33 T 11-10-2018 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 SUPERFAMILY SSF51055 334 377 2.75E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 SUPERFAMILY SSF88713 24 338 5.93E-27 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 Gene3D G3DSA:3.20.20.370 27 332 2.1E-103 T 11-10-2018 VV93_v1c26080 067d2a9d3a32db299a3769c575a085a9 427 Pfam PF01522 Polysaccharide deacetylase 23 129 8.2E-14 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 Gene3D G3DSA:3.30.565.10 382 528 4.9E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 Gene3D G3DSA:1.10.287.130 256 371 1.9E-22 T 11-10-2018 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 SMART SM00387 417 527 1.9E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 524 1.5E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 SMART SM00388 305 371 8.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 Pfam PF00512 His Kinase A (phospho-acceptor) domain 306 367 6.3E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 SMART SM00304 252 304 1.3E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 SUPERFAMILY SSF47384 288 369 5.49E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 1.7E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 1.7E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 1.7E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 1.7E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21100 7d2962c532979efeabffff5cf708eaa0 535 SUPERFAMILY SSF55874 361 529 9.43E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c20160 1a069ddbad295ba984773485f72185b2 215 Gene3D G3DSA:1.20.1280.20 130 215 1.1E-20 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c20160 1a069ddbad295ba984773485f72185b2 215 Hamap MF_01150 Chaperone protein TorD [torD]. 4 213 34.236 T 11-10-2018 IPR023069 Chaperone TorD VV93_v1c20160 1a069ddbad295ba984773485f72185b2 215 SUPERFAMILY SSF89155 9 213 6.15E-51 T 11-10-2018 IPR036411 TorD-like superfamily VV93_v1c20160 1a069ddbad295ba984773485f72185b2 215 Pfam PF02613 Nitrate reductase delta subunit 51 183 1.4E-38 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VV93_v1c20160 1a069ddbad295ba984773485f72185b2 215 Gene3D G3DSA:1.20.120.1820 4 127 6.8E-41 T 11-10-2018 VV93_v1c02530 f7a5d3a454946e1396adc6987e3e3d92 706 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 163 169 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c02530 f7a5d3a454946e1396adc6987e3e3d92 706 Pfam PF01555 DNA methylase 160 517 6.1E-22 T 11-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 VV93_v1c02530 f7a5d3a454946e1396adc6987e3e3d92 706 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 487 501 2.4E-6 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 VV93_v1c02530 f7a5d3a454946e1396adc6987e3e3d92 706 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 160 172 2.4E-6 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 VV93_v1c02530 f7a5d3a454946e1396adc6987e3e3d92 706 SUPERFAMILY SSF53335 136 525 1.2E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 143 353 2.6E-57 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 32.116 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 SUPERFAMILY SSF51735 1 146 1.04E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 SMART SM00859 2 121 1.4E-23 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 Gene3D G3DSA:3.30.360.10 134 350 7.2E-148 T 11-10-2018 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 120 1.0E-21 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 PIRSF PIRSF000148 1 371 1.4E-66 T 11-10-2018 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 SUPERFAMILY SSF55347 133 354 4.76E-78 T 11-10-2018 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 Gene3D G3DSA:3.40.50.720 3 356 7.2E-148 T 11-10-2018 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c10910 97085a0ba0d9127803fa6a1674e0fb25 371 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 366 2.1E-190 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82693 138 328 2.88E-23 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82714 185 269 4.97E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82714 716 800 3.14E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1037 0.0 T 11-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Pfam PF00873 AcrB/AcrD/AcrF family 5 1032 4.0E-246 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:1.20.1640.10 509 1030 6.2E-274 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 2.1E-31 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82693 46 127 6.8E-20 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:1.20.1640.10 15 508 6.2E-274 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.70.1440 665 862 6.2E-274 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.70.1430 42 812 6.2E-274 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82866 798 1037 1.06E-51 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 SUPERFAMILY SSF82866 294 498 1.44E-42 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.70.1320 135 328 6.2E-274 T 11-10-2018 VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.2090.10 182 274 6.2E-274 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.2090.10 716 804 6.2E-274 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c42360 155e8627e7c8949103621d4f200eefde 1042 Gene3D G3DSA:3.30.70.1430 562 664 6.2E-274 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 6.8E-202 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Pfam PF00206 Lyase 6 301 1.5E-88 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Gene3D G3DSA:3.40.630.30 463 604 4.5E-24 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PIRSF PIRSF036456 1 624 0.0 T 11-10-2018 IPR011244 Bifunctional argininosuccinate lyase/acetyltransferase GO:0004056|GO:0005737|GO:0006526|GO:0016746 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.0E-24 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.384 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.0E-67 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 SUPERFAMILY SSF48557 3 456 2.67E-141 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Pfam PF00583 Acetyltransferase (GNAT) family 498 572 2.2E-7 T 11-10-2018 IPR000182 GNAT domain VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 SUPERFAMILY SSF55729 461 588 4.43E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Gene3D G3DSA:1.20.200.10 108 446 2.8E-147 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Gene3D G3DSA:1.10.40.30 363 433 2.8E-147 T 11-10-2018 VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 6.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 6.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 6.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 6.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c27270 8be5ebac9f0b34d6de2f035633d24645 624 Gene3D G3DSA:1.10.275.10 1 107 1.5E-35 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Pfam PF09308 LuxQ, periplasmic 40 277 5.4E-102 T 11-10-2018 IPR015387 LuxQ, periplasmic GO:0004673|GO:0016791 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SMART SM00448 734 846 6.1E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 711 1.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:3.40.50.2300 722 855 9.3E-35 T 11-10-2018 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SUPERFAMILY SSF103190 51 269 2.9E-69 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SUPERFAMILY SSF55874 537 710 8.51E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:3.30.450.20 343 474 9.5E-7 T 11-10-2018 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:2.20.20.100 207 270 2.1E-6 T 11-10-2018 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SMART SM00388 483 548 1.9E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SMART SM00387 595 712 9.6E-40 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:1.10.287.130 475 548 5.7E-21 T 11-10-2018 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SUPERFAMILY SSF55785 347 461 3.64E-6 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SUPERFAMILY SSF47384 471 549 6.28E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 651 2.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 665 2.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 690 2.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 PRINTS PR00344 Bacterial sensor protein C-terminal signature 696 709 2.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Pfam PF00072 Response regulator receiver domain 736 845 1.2E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 SUPERFAMILY SSF52172 732 853 1.85E-32 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:3.30.565.10 549 715 3.3E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 ProDom PD142495 MEMBRANE SENSOR TRANSFERASE LUXQ 2.7.3.- TRANSMEMBRANE INNER PHOSPHORYLATION SENSORY AUTOINDUCER 12 360 0.0 T 11-10-2018 IPR015387 LuxQ, periplasmic GO:0004673|GO:0016791 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Pfam PF00512 His Kinase A (phospho-acceptor) domain 484 548 2.0E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c41460 9c339b10d7df7926fc504d58db9936ab 857 Gene3D G3DSA:3.30.450.220 50 206 8.3E-58 T 11-10-2018 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 4.4E-58 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 SUPERFAMILY SSF75445 127 198 5.49E-24 T 11-10-2018 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 33.919 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 214 1.3E-68 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 Gene3D G3DSA:3.40.50.1360 7 207 2.7E-81 T 11-10-2018 VV93_v1c25580 64988a8721523ba729331b955ac05639 218 SUPERFAMILY SSF100950 1 146 1.49E-46 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c25580 64988a8721523ba729331b955ac05639 218 Gene3D G3DSA:3.30.70.260 125 196 2.7E-81 T 11-10-2018 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 Gene3D G3DSA:3.30.40.70 439 462 5.8E-20 T 11-10-2018 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 PRINTS PR00113 Alkaline phosphatase signature 122 142 6.5E-38 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 PRINTS PR00113 Alkaline phosphatase signature 166 176 6.5E-38 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 PRINTS PR00113 Alkaline phosphatase signature 26 46 6.5E-38 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 PRINTS PR00113 Alkaline phosphatase signature 85 100 6.5E-38 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 PRINTS PR00113 Alkaline phosphatase signature 267 296 6.5E-38 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 Gene3D G3DSA:1.10.1200.140 388 438 6.7E-22 T 11-10-2018 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 Pfam PF00245 Alkaline phosphatase 26 503 5.3E-83 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 Gene3D G3DSA:3.40.720.10 463 525 2.9E-7 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 Gene3D G3DSA:3.40.720.10 24 371 1.7E-135 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 SUPERFAMILY SSF53649 11 504 3.45E-112 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 SMART SM00098 27 415 1.4E-54 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c21020 14e18ab3b626e18386975f7b328612af 525 ProSitePatterns PS00123 Alkaline phosphatase active site. 85 93 - T 11-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 PIRSF PIRSF028774 1 362 4.1E-193 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 Pfam PF01728 FtsJ-like methyltransferase 188 251 6.7E-6 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 357 84.432 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 Gene3D G3DSA:3.30.70.2810 1 78 2.3E-31 T 11-10-2018 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 SUPERFAMILY SSF53335 186 281 2.22E-11 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 Gene3D G3DSA:3.30.2300.20 80 177 7.1E-37 T 11-10-2018 VV93_v1c08180 3e2983a56e0ac54f355b29798fab0be3 363 Gene3D G3DSA:3.40.50.150 178 358 1.2E-52 T 11-10-2018 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Gene3D G3DSA:2.40.50.140 77 155 4.9E-11 T 11-10-2018 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Gene3D G3DSA:2.40.50.140 653 764 1.7E-26 T 11-10-2018 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SMART SM00316 650 733 6.0E-14 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SMART SM00955 267 595 3.5E-184 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SMART SM00357 90 152 1.9E-15 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SUPERFAMILY SSF50249 227 650 2.97E-143 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Pfam PF08206 Ribonuclease B OB domain 91 151 1.4E-21 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Pfam PF08461 Ribonuclease R winged-helix domain 27 88 2.8E-12 T 11-10-2018 IPR013668 Ribonuclease R winged-helix domain VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Pfam PF00773 RNB domain 267 594 1.7E-107 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 71 733 1.0E-255 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Hamap MF_01895 Ribonuclease R [rnr]. 42 733 58.864 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 ProSitePatterns PS01175 Ribonuclease II family signature. 562 586 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 Pfam PF00575 S1 RNA binding domain 650 731 9.2E-13 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SUPERFAMILY SSF50249 145 244 3.47E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SUPERFAMILY SSF50249 651 739 7.86E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 SUPERFAMILY SSF50249 71 153 2.4E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27890 761ce51804aff4498d42118229df1bb0 817 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 733 2.4E-274 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 VV93_v1c16890 ed5dbc867b7da4f62ecdf50e5a471014 185 Pfam PF13671 AAA domain 23 155 4.2E-10 T 11-10-2018 VV93_v1c16890 ed5dbc867b7da4f62ecdf50e5a471014 185 SUPERFAMILY SSF52540 18 182 4.64E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16890 ed5dbc867b7da4f62ecdf50e5a471014 185 Gene3D G3DSA:3.40.50.300 14 183 1.1E-24 T 11-10-2018 VV93_v1c09520 4e40f88986ebad73401cd567c031c963 114 SUPERFAMILY SSF81343 4 113 9.65E-25 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09520 4e40f88986ebad73401cd567c031c963 114 PIRSF PIRSF000169 1 114 7.7E-37 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VV93_v1c09520 4e40f88986ebad73401cd567c031c963 114 Gene3D G3DSA:1.20.1300.10 1 114 1.0E-27 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09520 4e40f88986ebad73401cd567c031c963 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 112 7.1E-34 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 Gene3D G3DSA:1.10.10.60 226 278 1.3E-17 T 11-10-2018 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 SMART SM00342 192 275 7.3E-32 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 SUPERFAMILY SSF46689 178 225 2.69E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 Pfam PF12833 Helix-turn-helix domain 198 276 1.9E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 SUPERFAMILY SSF46689 228 277 1.03E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 275 1.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 259 1.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31750 22166e3de80b0028635d075e82ae5a87 278 Gene3D G3DSA:1.10.10.60 175 225 5.0E-13 T 11-10-2018 VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 Pfam PF04266 ASCH domain 7 93 1.6E-15 T 11-10-2018 IPR007374 ASCH domain VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 Gene3D G3DSA:2.30.130.30 2 104 3.8E-47 T 11-10-2018 VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 SMART SM01022 7 103 2.4E-25 T 11-10-2018 IPR007374 ASCH domain VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 3 104 32.173 T 11-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 SUPERFAMILY SSF88697 4 104 2.29E-34 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c35580 dd35dcbb2ff00385a4a0b8912e52ab92 104 PIRSF PIRSF029143 2 104 3.1E-49 T 11-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Gene3D G3DSA:1.20.50.20 374 432 1.4E-22 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Pfam PF08275 DNA primase catalytic core, N-terminal domain 132 256 1.5E-41 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SUPERFAMILY SSF117023 454 585 4.71E-43 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Gene3D G3DSA:3.40.1360.10 247 373 1.3E-41 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SUPERFAMILY SSF57783 4 101 4.76E-38 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Pfam PF13155 Toprim-like 269 356 5.9E-14 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Hamap MF_00974 DNA primase [dnaG]. 4 583 29.616 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Pfam PF08278 DNA primase DnaG DnaB-binding 458 581 5.5E-35 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Pfam PF10410 DnaB-helicase binding domain of primase 375 427 1.8E-9 T 11-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Gene3D G3DSA:3.90.580.10 1 102 1.0E-39 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SMART SM00766 457 582 1.7E-53 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Pfam PF01807 CHC2 zinc finger 6 101 2.5E-41 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Gene3D G3DSA:1.10.860.10 445 587 1.1E-53 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SMART SM00493 265 336 5.6E-19 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SMART SM00400 36 90 2.1E-36 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 Gene3D G3DSA:3.90.980.10 121 246 1.4E-44 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 TIGRFAM TIGR01391 dnaG: DNA primase 5 422 3.0E-147 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 SUPERFAMILY SSF56731 121 433 3.75E-113 T 11-10-2018 VV93_v1c05040 a41a7d55db1aaa1c1b3264acdaf6fa41 587 PIRSF PIRSF002811 2 586 6.0E-144 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 56 5.5E-11 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 Gene3D G3DSA:3.40.50.12780 41 494 3.7E-99 T 11-10-2018 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 589 1.7E-26 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 Gene3D G3DSA:3.30.300.30 497 623 3.1E-25 T 11-10-2018 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 Pfam PF00501 AMP-binding enzyme 65 501 3.2E-80 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 SUPERFAMILY SSF56801 3 619 2.22E-152 T 11-10-2018 VV93_v1c14390 01057e7d5b96474231190c511ab3b0ad 626 ProSitePatterns PS00455 Putative AMP-binding domain signature. 237 248 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Gene3D G3DSA:3.30.70.3280 390 529 1.8E-52 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 3.3E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 3.3E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 3.3E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 3.3E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Gene3D G3DSA:3.40.50.300 110 275 6.6E-116 T 11-10-2018 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 1.1E-303 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 8.5E-8 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 163 1.9E-19 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 SUPERFAMILY SSF50447 262 393 3.77E-27 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 SUPERFAMILY SSF54980 393 468 3.6E-17 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 1.7E-46 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Gene3D G3DSA:3.40.50.300 72 379 6.6E-116 T 11-10-2018 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 SUPERFAMILY SSF52540 10 277 1.5E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.029 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c24040 d27cec415e5ad1cdcc07aa03dadda16d 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 3.7E-46 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 Gene3D G3DSA:1.25.40.10 37 145 4.1E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SUPERFAMILY SSF48452 213 386 8.1E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SUPERFAMILY SSF48452 72 247 1.25E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 Gene3D G3DSA:1.25.40.10 269 390 2.7E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 Gene3D G3DSA:1.25.40.10 146 255 9.8E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 Pfam PF13181 Tetratricopeptide repeat 149 180 0.025 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SMART SM00028 72 105 26.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SMART SM00028 358 391 190.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SMART SM00028 149 182 0.72 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c02230 46826afa0d724fe4d665844e9c9caf13 405 SMART SM00028 292 322 89.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c37590 dcab7248b74a136b5e52ce6d6f659023 551 SUPERFAMILY SSF52540 227 407 2.13E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37590 dcab7248b74a136b5e52ce6d6f659023 551 Pfam PF09818 Predicted ATPase of the ABC class 2 433 3.5E-180 T 11-10-2018 IPR019195 ABC transporter, ATPase, putative VV93_v1c29680 2cdc677246ebee0ecbcbce5e1298b054 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 368 3.6E-81 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VV93_v1c29680 2cdc677246ebee0ecbcbce5e1298b054 401 SUPERFAMILY SSF103473 6 373 4.58E-51 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c29680 2cdc677246ebee0ecbcbce5e1298b054 401 Gene3D G3DSA:1.20.1720.10 8 377 4.4E-72 T 11-10-2018 VV93_v1c29680 2cdc677246ebee0ecbcbce5e1298b054 401 Pfam PF07690 Major Facilitator Superfamily 13 349 1.6E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c45240 7c89df00df246dca986e4e1a5fa8f6c0 361 SUPERFAMILY SSF48452 81 144 1.84E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c45240 7c89df00df246dca986e4e1a5fa8f6c0 361 Gene3D G3DSA:1.25.40.10 28 230 6.9E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c45240 7c89df00df246dca986e4e1a5fa8f6c0 361 Pfam PF02698 DUF218 domain 189 309 3.4E-20 T 11-10-2018 IPR003848 Domain of unknown function DUF218 VV93_v1c45240 7c89df00df246dca986e4e1a5fa8f6c0 361 SMART SM00028 91 124 0.008 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 9 412 4.0E-117 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 Gene3D G3DSA:3.40.50.720 202 425 4.7E-56 T 11-10-2018 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 SMART SM00984 319 419 9.1E-36 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 9 182 1.1E-30 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 319 419 1.2E-22 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 PIRSF PIRSF500136 2 426 3.8E-150 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 SUPERFAMILY SSF48179 203 293 4.42E-25 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 PIRSF PIRSF000124 8 425 3.3E-49 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 Gene3D G3DSA:3.40.50.720 4 198 2.3E-55 T 11-10-2018 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 SUPERFAMILY SSF51735 9 192 3.21E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 292 9.3E-24 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03240 8a91445cc6e68ea01e6da266bed5a3d7 426 SUPERFAMILY SSF52413 304 421 5.49E-29 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:3.30.565.10 286 446 1.0E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 443 2.6E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 287 2.0E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:1.10.287.130 194 285 7.0E-24 T 11-10-2018 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SMART SM00387 335 448 3.4E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Pfam PF00072 Response regulator receiver domain 469 578 1.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SMART SM00388 222 287 3.5E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF47384 208 288 1.29E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF52172 465 583 1.57E-31 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF55874 276 441 6.16E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:3.40.50.2300 450 584 1.6E-32 T 11-10-2018 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 445 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01310 a31fc624628d45d07b37cec9068c9904 598 SMART SM00448 467 579 1.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:3.30.565.10 286 446 1.0E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 443 2.6E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 287 2.0E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:1.10.287.130 194 285 7.0E-24 T 11-10-2018 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SMART SM00387 335 448 3.4E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Pfam PF00072 Response regulator receiver domain 469 578 1.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SMART SM00388 222 287 3.5E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF47384 208 288 1.29E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF52172 465 583 1.57E-31 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SUPERFAMILY SSF55874 276 441 6.16E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 Gene3D G3DSA:3.40.50.2300 450 584 1.6E-32 T 11-10-2018 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 445 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c34870 a31fc624628d45d07b37cec9068c9904 598 SMART SM00448 467 579 1.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 Gene3D G3DSA:1.20.5.510 1 40 1.4E-5 T 11-10-2018 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 190 7.9E-75 T 11-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 5 40 1.6E-14 T 11-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 Pfam PF00355 Rieske [2Fe-2S] domain 54 174 1.3E-11 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 3.0E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 3.0E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 3.0E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 SUPERFAMILY SSF50022 30 191 1.14E-43 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c05370 d9efd21e1f7348f6ff1f27d707d5993e 196 Gene3D G3DSA:2.102.10.10 43 190 1.9E-47 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 Gene3D G3DSA:1.20.58.340 252 309 4.5E-9 T 11-10-2018 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 SUPERFAMILY SSF143865 26 235 1.44E-29 T 11-10-2018 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 Gene3D G3DSA:3.30.460.20 1 124 7.2E-43 T 11-10-2018 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 Gene3D G3DSA:1.20.58.340 125 249 6.3E-24 T 11-10-2018 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 SUPERFAMILY SSF144083 246 306 2.75E-12 T 11-10-2018 VV93_v1c23430 19284097879ceadd5064130f5e6217f8 309 Pfam PF01544 CorA-like Mg2+ transporter protein 28 304 6.5E-42 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Pfam PF08245 Mur ligase middle domain 127 307 1.4E-29 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 417 8.5E-23 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 479 43.217 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 SUPERFAMILY SSF53623 108 321 5.23E-72 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Gene3D G3DSA:3.40.1190.10 111 325 7.6E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 SUPERFAMILY SSF51984 23 109 6.28E-29 T 11-10-2018 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Gene3D G3DSA:3.40.50.720 23 110 7.9E-34 T 11-10-2018 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 25 473 4.1E-187 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Pfam PF01225 Mur ligase family, catalytic domain 25 121 4.0E-29 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 Gene3D G3DSA:3.90.190.20 326 484 2.1E-49 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05580 956c8630bb4bd57ea9799ff695a17657 486 SUPERFAMILY SSF53244 326 474 5.68E-49 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 2.0E-17 T 11-10-2018 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 SMART SM00344 6 115 2.3E-46 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 Pfam PF01037 Lrp/AsnC ligand binding domain 72 146 4.5E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 SUPERFAMILY SSF46785 4 65 8.27E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 Gene3D G3DSA:1.10.10.10 2 57 6.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 SUPERFAMILY SSF54909 66 151 1.47E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 Gene3D G3DSA:3.30.70.920 58 152 7.2E-27 T 11-10-2018 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 6.9E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 6.9E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c45030 50b8a4fc6323fc651a89ce38cbd0ce9f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 6.9E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 Pfam PF13807 G-rich domain on putative tyrosine kinase 396 467 1.3E-7 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 SUPERFAMILY SSF52540 539 715 5.57E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 522 722 9.5E-43 T 11-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 Gene3D G3DSA:3.40.50.300 462 726 4.4E-68 T 11-10-2018 VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 Pfam PF13614 AAA domain 552 669 1.4E-10 T 11-10-2018 IPR025669 AAA domain VV93_v1c33790 b2909aaf58d61f7e7d676ba313bd7813 726 Pfam PF02706 Chain length determinant protein 21 106 8.8E-10 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 448 496 6.4E-11 T 11-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 215 226 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Gene3D G3DSA:2.30.130.90 338 501 7.4E-66 T 11-10-2018 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 36 132 7.5E-29 T 11-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Pfam PF01189 16S rRNA methyltransferase RsmB/F 140 335 3.6E-48 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Gene3D G3DSA:3.40.50.150 30 337 5.6E-97 T 11-10-2018 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 SUPERFAMILY SSF53335 34 337 2.81E-61 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 69 337 2.1E-99 T 11-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 34 501 66.449 T 11-10-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 149 159 3.8E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 320 337 3.8E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 216 228 3.8E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 266 282 3.8E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c15160 7b59975e39b3ae8db6c143e930c6299a 501 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 118 132 3.8E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 Hamap MF_00219 Dihydroorotase [pyrC]. 2 342 47.131 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 ProSitePatterns PS00483 Dihydroorotase signature 2. 244 255 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 9.6E-140 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 Gene3D G3DSA:3.20.20.140 2 342 1.6E-110 T 11-10-2018 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 PIRSF PIRSF001237 1 342 9.6E-143 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 Pfam PF01979 Amidohydrolase family 11 317 7.2E-17 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c33940 ba0d0751ecd589f6ce16e0f4e0d96afe 342 SUPERFAMILY SSF51556 1 342 8.51E-147 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 Gene3D G3DSA:3.30.379.10 28 163 9.2E-22 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 Gene3D G3DSA:3.20.20.80 164 445 5.3E-90 T 11-10-2018 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 SUPERFAMILY SSF51445 165 617 3.63E-102 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 Gene3D G3DSA:3.20.20.80 519 642 5.3E-15 T 11-10-2018 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 188 209 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 290 308 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 159 176 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 312 325 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 240 257 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 PRINTS PR00738 Glycosyl hydrolase family 20 signature 124 144 2.4E-39 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 SUPERFAMILY SSF55545 30 164 2.09E-29 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 165 604 7.2E-120 T 11-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c40780 0a5c5b446ff3d64d69982aa033e05881 823 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 30 162 1.1E-13 T 11-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VV93_v1c17380 ae10b670b825619efa03bb17e35fbb50 262 SUPERFAMILY SSF46689 28 86 2.0E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c17380 ae10b670b825619efa03bb17e35fbb50 262 Gene3D G3DSA:1.10.357.10 28 212 1.2E-12 T 11-10-2018 VV93_v1c17380 ae10b670b825619efa03bb17e35fbb50 262 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 81 1.0E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 Pfam PF05954 Phage late control gene D protein (GPD) 30 333 1.4E-73 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 SUPERFAMILY SSF69255 372 460 3.14E-33 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 24 513 2.2E-105 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 11 531 1.5E-178 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 Gene3D G3DSA:2.30.110.50 15 331 7.0E-65 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 SUPERFAMILY SSF69349 450 601 1.1E-38 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 Gene3D G3DSA:2.40.50.230 363 465 1.5E-42 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 SUPERFAMILY SSF69279 209 367 6.12E-11 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 SUPERFAMILY SSF69279 13 195 1.93E-41 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 Gene3D G3DSA:3.55.50.10 109 199 7.0E-65 T 11-10-2018 VV93_v1c39220 d98b632609f32691af673d1e1226661b 611 Gene3D G3DSA:3.30.1920.30 230 293 7.0E-65 T 11-10-2018 VV93_v1c00860 6eedf1d7cca8ca62ffc9a370d3954199 332 SUPERFAMILY SSF53474 35 324 4.26E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c00860 6eedf1d7cca8ca62ffc9a370d3954199 332 Pfam PF12146 Serine aminopeptidase, S33 53 310 1.1E-57 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 VV93_v1c00860 6eedf1d7cca8ca62ffc9a370d3954199 332 Gene3D G3DSA:3.40.50.1820 26 329 1.1E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 PIRSF PIRSF005496 1 819 0.0 T 11-10-2018 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 SUPERFAMILY SSF52540 17 338 5.5E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Pfam PF08482 ATP-dependent helicase C-terminal 673 805 9.6E-53 T 11-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Gene3D G3DSA:3.40.50.300 180 346 1.1E-52 T 11-10-2018 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 817 0.0 T 11-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 SMART SM00847 387 476 1.3E-7 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Pfam PF00270 DEAD/DEAH box helicase 14 163 8.0E-9 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Pfam PF00271 Helicase conserved C-terminal domain 204 326 1.2E-15 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Gene3D G3DSA:3.40.50.300 1 179 1.5E-53 T 11-10-2018 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 Pfam PF04408 Helicase associated domain (HA2) 388 461 5.5E-7 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 SMART SM00490 226 327 1.2E-19 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c24690 5f59b46b58f90cb692c6002094ca0c90 820 SMART SM00487 2 186 3.1E-16 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 Pfam PF00107 Zinc-binding dehydrogenase 176 303 6.4E-28 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 Gene3D G3DSA:3.40.50.720 155 288 1.2E-116 T 11-10-2018 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 SUPERFAMILY SSF50129 3 175 1.13E-51 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 5 342 3.3E-180 T 11-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 SUPERFAMILY SSF51735 143 307 8.02E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 3 342 60.335 T 11-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 Gene3D G3DSA:3.90.180.10 22 330 1.2E-116 T 11-10-2018 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 SMART SM00829 14 340 6.2E-5 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VV93_v1c32920 9a883ca4143ba23ef58b470d5780a88b 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 136 1.0E-30 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VV93_v1c00530 ed8e0e40a400f9cd2b7ff0aad1be3dac 173 Pfam PF01202 Shikimate kinase 13 129 9.8E-13 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VV93_v1c00530 ed8e0e40a400f9cd2b7ff0aad1be3dac 173 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 7 165 7.1E-64 T 11-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 VV93_v1c00530 ed8e0e40a400f9cd2b7ff0aad1be3dac 173 SUPERFAMILY SSF52540 4 166 2.84E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00530 ed8e0e40a400f9cd2b7ff0aad1be3dac 173 Gene3D G3DSA:3.40.50.300 2 167 8.0E-65 T 11-10-2018 VV93_v1c02820 6e433778def44842e9b2aaf3c3d6b004 658 Gene3D G3DSA:3.40.720.10 276 583 1.2E-34 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c02820 6e433778def44842e9b2aaf3c3d6b004 658 Pfam PF00884 Sulfatase 282 572 4.7E-22 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c02820 6e433778def44842e9b2aaf3c3d6b004 658 SUPERFAMILY SSF53649 280 589 2.16E-25 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 Gene3D G3DSA:1.20.1080.10 1 228 3.9E-85 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 229 35.093 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 136 154 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 166 188 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 79 98 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 2 21 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 42 66 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 PRINTS PR00783 Major intrinsic protein family signature 205 225 3.8E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 222 4.4E-60 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 ProSitePatterns PS00221 MIP family signature. 60 68 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 Pfam PF00230 Major intrinsic protein 2 222 1.8E-47 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c21080 e2e5c8746811fa0372fe4925592edd72 231 SUPERFAMILY SSF81338 2 227 2.49E-68 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c42510 b17e71197a2159499af05210af79aa5b 144 Gene3D G3DSA:3.40.630.30 2 137 1.1E-36 T 11-10-2018 VV93_v1c42510 b17e71197a2159499af05210af79aa5b 144 SUPERFAMILY SSF55729 1 134 2.78E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c42510 b17e71197a2159499af05210af79aa5b 144 Pfam PF00583 Acetyltransferase (GNAT) family 34 125 1.4E-15 T 11-10-2018 IPR000182 GNAT domain VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 Gene3D G3DSA:3.40.50.300 43 231 2.6E-6 T 11-10-2018 VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 SUPERFAMILY SSF52540 35 220 8.07E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 Pfam PF14331 ImcF-related N-terminal domain 109 366 4.2E-90 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 Pfam PF06744 Type VI secretion protein IcmF C-terminal 844 1037 5.4E-57 T 11-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 Pfam PF06761 Intracellular multiplication and human macrophage-killing 420 719 3.2E-71 T 11-10-2018 IPR009612 ImcF-related VV93_v1c39340 4f3caf72ab89addbb45b2bb0d098c18e 1089 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 6 1087 0.0 T 11-10-2018 IPR017731 Type VI secretion system, IcmF VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 374 2.5E-73 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 143 1.3E-46 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 SUPERFAMILY SSF52283 1 174 1.02E-52 T 11-10-2018 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 SMART SM01003 4 143 6.0E-69 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 Gene3D G3DSA:3.40.50.720 143 324 6.6E-157 T 11-10-2018 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 PIRSF PIRSF000203 1 516 2.3E-269 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 Gene3D G3DSA:3.40.50.720 3 371 6.6E-157 T 11-10-2018 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 SMART SM01002 152 317 1.8E-80 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 11-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 SUPERFAMILY SSF51735 143 320 3.4E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 516 4.8E-272 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VV93_v1c38190 5e835e920d2d2f9638cba68fbc93a4ab 518 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 433 516 1.4E-36 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 SUPERFAMILY SSF52518 358 545 4.11E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 SUPERFAMILY SSF52518 1 178 1.72E-62 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Gene3D G3DSA:3.40.50.1220 180 349 3.5E-51 T 11-10-2018 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 523 1.8E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Gene3D G3DSA:3.40.50.970 350 548 5.2E-67 T 11-10-2018 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 167 1.0E-55 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 322 8.6E-40 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 SUPERFAMILY SSF52467 182 342 1.08E-54 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 Gene3D G3DSA:3.40.50.970 1 175 3.6E-67 T 11-10-2018 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 546 6.5E-210 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VV93_v1c29620 728de29c2030514ff833d43ee4246f6b 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 412 431 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SMART SM00388 207 272 5.5E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SUPERFAMILY SSF55874 261 432 5.63E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Pfam PF00072 Response regulator receiver domain 455 560 4.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SMART SM00387 319 430 1.6E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SUPERFAMILY SSF52172 452 568 3.56E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SMART SM00448 453 564 1.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Gene3D G3DSA:1.10.287.130 181 270 1.8E-21 T 11-10-2018 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 319 429 2.7E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 427 1.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 1.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 408 1.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 383 1.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 SUPERFAMILY SSF47384 195 272 1.41E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Gene3D G3DSA:3.40.50.2300 437 566 2.1E-35 T 11-10-2018 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 272 3.9E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c18450 07e0bc91125e44926cb61f583e320662 571 Gene3D G3DSA:3.30.565.10 271 433 7.1E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Gene3D G3DSA:3.30.70.240 582 653 9.3E-78 T 11-10-2018 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SUPERFAMILY SSF50447 243 371 7.07E-22 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SUPERFAMILY SSF52540 2 259 2.81E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SUPERFAMILY SSF54211 457 577 3.54E-39 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SUPERFAMILY SSF54980 581 669 1.44E-20 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Gene3D G3DSA:2.40.30.10 268 383 2.6E-22 T 11-10-2018 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Pfam PF14492 Elongation Factor G, domain II 382 455 3.2E-24 T 11-10-2018 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Gene3D G3DSA:3.40.50.300 2 264 1.3E-52 T 11-10-2018 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Pfam PF03764 Elongation factor G, domain IV 457 575 1.1E-38 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SMART SM00838 578 666 2.3E-23 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Gene3D G3DSA:3.30.230.10 463 666 9.3E-78 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Pfam PF00679 Elongation factor G C-terminus 579 665 2.0E-24 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 142 2.3E-12 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Gene3D G3DSA:3.30.70.870 384 461 2.9E-23 T 11-10-2018 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 Pfam PF00009 Elongation factor Tu GTP binding domain 5 259 4.5E-28 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SUPERFAMILY SSF54980 380 457 4.68E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c43390 9b727acfab843612342b6580ef1591f2 672 SMART SM00889 458 576 1.2E-55 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 Pfam PF01371 Trp repressor protein 9 94 5.2E-34 T 11-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 4 81 2.0E-39 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 TIGRFAM TIGR01321 TrpR: trp operon repressor 2 84 4.1E-27 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 Hamap MF_00475 Trp operon repressor [trpR]. 6 99 23.735 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 PIRSF PIRSF003196 1 100 4.7E-41 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 Gene3D G3DSA:1.10.1270.10 1 98 5.2E-34 T 11-10-2018 IPR038116 TrpR-like superfamily VV93_v1c06440 2bd2ec621959bdccc47ff03ff29b2ec1 102 SUPERFAMILY SSF48295 2 95 1.78E-30 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VV93_v1c29220 70191408e10f5144b78f270d408fc114 257 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 247 5.0E-112 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VV93_v1c29220 70191408e10f5144b78f270d408fc114 257 Gene3D G3DSA:3.20.20.70 1 253 2.6E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c29220 70191408e10f5144b78f270d408fc114 257 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 43.256 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 VV93_v1c29220 70191408e10f5144b78f270d408fc114 257 SUPERFAMILY SSF110399 1 236 4.58E-87 T 11-10-2018 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 Pfam PF00701 Dihydrodipicolinate synthetase family 3 290 3.7E-48 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 2.5E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 2.5E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 2.5E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 SUPERFAMILY SSF51569 2 296 1.26E-71 T 11-10-2018 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 PIRSF PIRSF001365 1 298 3.0E-67 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 Gene3D G3DSA:3.20.20.70 1 298 3.0E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c41260 0a755ed87faea4b8b50ba65df5bffd4a 298 SMART SM01130 3 294 7.6E-66 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Pfam PF13361 UvrD-like helicase C-terminal domain 271 615 1.6E-73 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Gene3D G3DSA:3.40.50.300 274 634 1.1E-124 T 11-10-2018 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Gene3D G3DSA:1.10.10.160 108 181 8.8E-99 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Gene3D G3DSA:1.10.486.10 377 546 1.1E-124 T 11-10-2018 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 669 0.0 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Gene3D G3DSA:3.40.50.300 4 266 8.8E-99 T 11-10-2018 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 SUPERFAMILY SSF52540 1 640 1.06E-162 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 1.3E-76 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VV93_v1c00360 69f64ae955cf2d7509529b1ccdd27a8b 672 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 670 40.76 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PIRSF PIRSF001369 10 380 7.0E-116 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 SUPERFAMILY SSF48256 14 380 1.16E-124 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 15 380 2.2E-162 T 11-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 130 143 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 256 276 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 333 347 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 181 196 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 313 329 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 PRINTS PR00143 Citrate synthase signature 203 231 9.1E-36 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 Pfam PF00285 Citrate synthase, C-terminal domain 15 362 3.9E-113 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 Gene3D G3DSA:1.10.580.10 36 360 1.9E-118 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 ProSitePatterns PS00480 Citrate synthase signature. 263 275 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VV93_v1c14360 81d12a5861edfde9abef7a589205d246 380 Gene3D G3DSA:1.10.230.10 229 327 1.9E-118 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 Pfam PF08448 PAS fold 285 395 5.8E-18 T 11-10-2018 IPR013656 PAS fold-4 VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SUPERFAMILY SSF55785 169 261 8.9E-6 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 Pfam PF00990 Diguanylate cyclase, GGDEF domain 413 573 6.6E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SMART SM00267 401 577 1.7E-68 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 Gene3D G3DSA:3.30.450.20 268 406 5.5E-24 T 11-10-2018 VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SUPERFAMILY SSF55073 417 576 1.54E-46 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 Gene3D G3DSA:3.30.450.20 160 267 5.4E-7 T 11-10-2018 VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 276 401 1.7E-13 T 11-10-2018 IPR000014 PAS domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 Gene3D G3DSA:3.30.70.270 407 579 8.5E-53 T 11-10-2018 VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 408 576 1.7E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SUPERFAMILY SSF55785 266 392 1.73E-19 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SMART SM00091 158 223 25.0 T 11-10-2018 IPR000014 PAS domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SMART SM00091 38 101 200.0 T 11-10-2018 IPR000014 PAS domain VV93_v1c05820 7a76184f149fe2e67c51db1941df69f5 599 SMART SM00091 279 346 0.0026 T 11-10-2018 IPR000014 PAS domain VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 1.4E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 1.4E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 1.4E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 356 364 1.4E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 SUPERFAMILY SSF52343 256 393 3.01E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Pfam PF00175 Oxidoreductase NAD-binding domain 264 370 4.9E-17 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Gene3D G3DSA:2.40.30.10 149 254 2.5E-33 T 11-10-2018 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 SUPERFAMILY SSF63380 149 254 5.68E-29 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Hamap MF_01252 Flavohemoprotein [hmp]. 1 394 56.852 T 11-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 356 364 4.2E-10 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 4.2E-10 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 4.2E-10 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 4.2E-10 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Gene3D G3DSA:3.40.50.80 257 394 4.3E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Pfam PF00042 Globin 8 102 2.4E-14 T 11-10-2018 IPR000971 Globin GO:0020037 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Pfam PF00970 Oxidoreductase FAD-binding domain 155 252 5.1E-11 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 SUPERFAMILY SSF46458 1 142 3.49E-37 T 11-10-2018 IPR009050 Globin-like superfamily VV93_v1c27920 4c2a2e8584328e2d774227dbaf5f7749 394 Gene3D G3DSA:1.10.490.10 1 142 1.4E-49 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 VV93_v1c15710 db70e59d91115265ec255da69b01d9b4 310 Pfam PF01171 PP-loop family 43 203 1.7E-14 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VV93_v1c15710 db70e59d91115265ec255da69b01d9b4 310 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 11 270 57.707 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 VV93_v1c15710 db70e59d91115265ec255da69b01d9b4 310 Gene3D G3DSA:3.40.50.620 2 265 3.5E-50 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c15710 db70e59d91115265ec255da69b01d9b4 310 PIRSF PIRSF004976 1 274 3.7E-76 T 11-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 VV93_v1c15710 db70e59d91115265ec255da69b01d9b4 310 SUPERFAMILY SSF52402 29 255 2.0E-56 T 11-10-2018 VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 116 5.2E-35 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 111 26.226 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 SUPERFAMILY SSF89919 2 105 1.31E-31 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 Gene3D G3DSA:3.30.300.20 1 106 8.8E-35 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 98 3.0E-47 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 ProSitePatterns PS01319 Ribosome-binding factor A signature. 77 98 - T 11-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 VV93_v1c24240 b0efab3a0c141ef5c730bf3bb9c8cfba 131 Pfam PF02033 Ribosome-binding factor A 7 110 4.0E-30 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 VV93_v1c39640 5afe901e8bed28cf88a4e2ecb30fb0f2 364 Gene3D G3DSA:3.40.50.970 1 351 8.6E-104 T 11-10-2018 VV93_v1c39640 5afe901e8bed28cf88a4e2ecb30fb0f2 364 Pfam PF00676 Dehydrogenase E1 component 36 320 4.3E-78 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 VV93_v1c39640 5afe901e8bed28cf88a4e2ecb30fb0f2 364 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 8 350 3.3E-137 T 11-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VV93_v1c39640 5afe901e8bed28cf88a4e2ecb30fb0f2 364 SUPERFAMILY SSF52518 7 352 9.4E-95 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 SUPERFAMILY SSF111369 39 267 3.14E-26 T 11-10-2018 VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 326 5.8E-60 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 Gene3D G3DSA:2.40.420.20 32 324 5.6E-57 T 11-10-2018 VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 Gene3D G3DSA:2.40.50.100 48 188 5.6E-57 T 11-10-2018 VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 259 5.4E-16 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 Gene3D G3DSA:2.40.30.170 36 266 5.6E-57 T 11-10-2018 VV93_v1c38410 451354e9945634e065a0ad6a3cca483e 334 Gene3D G3DSA:1.10.287.470 86 153 5.6E-57 T 11-10-2018 VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 SUPERFAMILY SSF56801 33 650 1.28E-121 T 11-10-2018 VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 ProSitePatterns PS00455 Putative AMP-binding domain signature. 277 288 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 Pfam PF00501 AMP-binding enzyme 103 532 2.8E-46 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 6 650 1.2E-240 T 11-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 Gene3D G3DSA:3.30.300.30 532 657 1.0E-14 T 11-10-2018 VV93_v1c39520 dc77cddcc393f2d6ec6b2edc1fc3f495 658 Gene3D G3DSA:3.40.50.12780 79 528 1.4E-55 T 11-10-2018 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 SUPERFAMILY SSF52172 4 135 5.69E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 Gene3D G3DSA:3.40.50.12740 5 211 3.0E-67 T 11-10-2018 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 SMART SM00448 5 118 7.9E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 Pfam PF00072 Response regulator receiver domain 7 119 2.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 5.8E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 5.8E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 5.8E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 7.2E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 SMART SM00421 148 205 5.6E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c18700 e39e2688071dde0348c18fea5c4ef5bb 212 SUPERFAMILY SSF46894 139 211 1.29E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c33800 efd2ac30cae72aab83607f03227034a5 177 Gene3D G3DSA:3.10.560.10 19 172 1.0E-26 T 11-10-2018 VV93_v1c33800 efd2ac30cae72aab83607f03227034a5 177 Gene3D G3DSA:3.30.1950.10 31 103 1.0E-26 T 11-10-2018 VV93_v1c33800 efd2ac30cae72aab83607f03227034a5 177 Pfam PF10531 SLBB domain 105 152 9.2E-16 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c33800 efd2ac30cae72aab83607f03227034a5 177 Pfam PF02563 Polysaccharide biosynthesis/export protein 25 99 2.5E-19 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VV93_v1c18250 0df88d60cd7ec1d42ec47f657e3a2489 192 SUPERFAMILY SSF102114 2 140 2.08E-10 T 11-10-2018 VV93_v1c18250 0df88d60cd7ec1d42ec47f657e3a2489 192 Gene3D G3DSA:3.20.20.70 1 175 2.2E-28 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c18250 0df88d60cd7ec1d42ec47f657e3a2489 192 Pfam PF04055 Radical SAM superfamily 7 130 1.8E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 Gene3D G3DSA:1.10.10.10 74 158 1.2E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 155 42.961 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 76 154 7.5E-35 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 71 3.0E-6 T 11-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 154 1.3E-39 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 125 131 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 SUPERFAMILY SSF46767 74 154 7.46E-34 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 SUPERFAMILY SSF53155 3 80 7.26E-20 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c30440 a6d2de07e26b90a593b1afa2a7ee4404 161 Gene3D G3DSA:3.30.160.70 1 70 6.2E-19 T 11-10-2018 VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 SUPERFAMILY SSF53850 89 290 5.25E-26 T 11-10-2018 VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 SUPERFAMILY SSF46785 6 87 1.2E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 Gene3D G3DSA:3.40.190.290 93 278 5.2E-12 T 11-10-2018 VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 Pfam PF03466 LysR substrate binding domain 88 289 3.0E-23 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c29670 a22768ec3f4a58b3782bf29533130120 306 Gene3D G3DSA:1.10.10.10 3 90 1.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 SUPERFAMILY SSF103473 10 431 9.02E-81 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 PIRSF PIRSF002808 6 443 2.3E-145 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 11-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 Pfam PF07690 Major Facilitator Superfamily 36 396 5.5E-49 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 Gene3D G3DSA:1.20.1250.20 238 438 6.4E-44 T 11-10-2018 VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 Gene3D G3DSA:1.20.1250.20 19 223 6.8E-53 T 11-10-2018 VV93_v1c40060 45a33a8a75c9a9b61f0b4cc6692cdd1e 446 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 5.1E-141 T 11-10-2018 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 Pfam PF00072 Response regulator receiver domain 6 112 1.5E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 SMART SM00862 147 218 1.1E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 Gene3D G3DSA:3.40.50.2300 1 120 4.1E-29 T 11-10-2018 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 SUPERFAMILY SSF52172 4 116 1.42E-27 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 SMART SM00448 3 111 9.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 Gene3D G3DSA:1.10.10.10 126 220 1.5E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 218 2.2E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c38160 79a2c2f71121f1899d02e02e6ecb7db1 220 SUPERFAMILY SSF46894 124 218 2.64E-29 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF01751 Toprim domain 5 148 5.0E-32 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 712 749 4.4E-9 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 602 627 1.0E-4 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:2.70.20.10 219 478 1.4E-161 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:2.20.25.10 812 869 2.0E-27 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF08272 Topoisomerase I zinc-ribbon-like 828 868 9.8E-19 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF08272 Topoisomerase I zinc-ribbon-like 761 797 8.9E-11 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SUPERFAMILY SSF57783 748 811 2.72E-18 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SMART SM00436 139 227 1.3E-47 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SMART SM00437 278 532 2.9E-119 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 1.9E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 495 509 1.9E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 1.9E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 1.9E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 1.9E-35 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 639 1.2E-246 T 11-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:3.30.65.10 749 811 2.6E-30 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:3.30.65.10 701 748 2.7E-6 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:1.10.290.10 286 410 1.4E-161 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SUPERFAMILY SSF56712 3 614 7.06E-198 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:3.40.50.140 1 169 5.4E-66 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SMART SM00493 3 138 9.0E-37 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Pfam PF01131 DNA topoisomerase 163 569 5.5E-128 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 736 53.915 T 11-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 Gene3D G3DSA:1.10.460.10 171 576 1.4E-161 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SUPERFAMILY SSF57783 813 869 3.57E-21 T 11-10-2018 VV93_v1c20240 47d2b1ac7568145eab2c78a22e7d81a8 874 SUPERFAMILY SSF57783 704 746 2.21E-5 T 11-10-2018 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SMART SM01231 325 385 2.2E-17 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SUPERFAMILY SSF55874 388 571 1.44E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Pfam PF01584 CheW-like domain 579 708 4.2E-22 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SMART SM00260 565 706 5.1E-33 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SUPERFAMILY SSF47384 327 386 4.71E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 557 570 5.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 5.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 551 5.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 5.2E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SMART SM00073 6 103 1.4E-18 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Gene3D G3DSA:3.30.565.10 386 572 8.3E-57 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Gene3D G3DSA:1.20.120.160 2 143 6.5E-36 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Pfam PF01627 Hpt domain 8 99 3.3E-17 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Gene3D G3DSA:1.10.287.560 326 385 2.8E-19 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 326 385 1.6E-12 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 572 5.9E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SUPERFAMILY SSF50341 572 706 1.31E-28 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SUPERFAMILY SSF47226 6 128 9.55E-31 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Gene3D G3DSA:2.40.50.180 596 661 1.9E-34 T 11-10-2018 VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 SMART SM00387 430 573 1.4E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21640 e3084b6aa7c178682a7db911ddcf5f9c 715 Gene3D G3DSA:2.30.30.40 573 702 1.9E-34 T 11-10-2018 VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 SMART SM00052 502 747 3.6E-101 T 11-10-2018 IPR001633 EAL domain VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 Pfam PF00563 EAL domain 508 742 7.5E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 SUPERFAMILY SSF141868 507 754 1.15E-83 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 SMART SM00267 325 492 1.9E-52 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 Pfam PF00990 Diguanylate cyclase, GGDEF domain 336 486 8.7E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 Gene3D G3DSA:3.30.450.20 81 182 8.5E-7 T 11-10-2018 VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 SUPERFAMILY SSF55073 341 489 1.65E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 Gene3D G3DSA:3.20.20.450 505 758 8.2E-89 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 332 488 8.1E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40370 7b0e3d2570ca5d20d700284efd0692d9 758 Gene3D G3DSA:3.30.70.270 330 504 5.0E-50 T 11-10-2018 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 Pfam PF00579 tRNA synthetases class I (W and Y) 30 316 4.6E-78 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 Gene3D G3DSA:3.10.290.10 326 394 9.4E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 4 394 3.3E-127 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 SUPERFAMILY SSF55174 320 394 4.32E-15 T 11-10-2018 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 Gene3D G3DSA:1.10.240.10 218 325 2.2E-33 T 11-10-2018 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 SUPERFAMILY SSF52374 6 316 7.04E-98 T 11-10-2018 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 Gene3D G3DSA:3.40.50.620 5 217 5.5E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 394 48.418 T 11-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.7E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.7E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 1.7E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c24380 2754658c3a1d1d976f61f0cf0c09a977 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 1.7E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Pfam PF00072 Response regulator receiver domain 35 145 4.5E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 384 393 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Gene3D G3DSA:3.40.50.2300 34 151 6.8E-29 T 11-10-2018 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 196 209 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Pfam PF02954 Bacterial regulatory protein, Fis family 451 492 7.0E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Pfam PF00158 Sigma-54 interaction domain 172 338 7.4E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 SUPERFAMILY SSF46689 384 491 9.86E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Gene3D G3DSA:1.10.8.60 342 406 1.7E-17 T 11-10-2018 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Gene3D G3DSA:3.40.50.300 157 341 3.9E-64 T 11-10-2018 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 SUPERFAMILY SSF52172 33 214 7.83E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 Gene3D G3DSA:1.10.10.60 446 491 4.6E-12 T 11-10-2018 VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 SMART SM00382 192 335 6.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 SUPERFAMILY SSF52540 171 401 3.27E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16040 0e55e2a7b70afc8afabf8aa7a2b53de7 501 SMART SM00448 33 144 1.6E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.40.50.2300 137 258 3.2E-5 T 11-10-2018 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Pfam PF13426 PAS domain 502 600 6.9E-9 T 11-10-2018 IPR000014 PAS domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SUPERFAMILY SSF55785 354 477 1.74E-8 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 489 609 9.2E-15 T 11-10-2018 IPR000014 PAS domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SUPERFAMILY SSF141868 792 1040 4.58E-68 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Pfam PF00563 EAL domain 794 1028 1.6E-54 T 11-10-2018 IPR001633 EAL domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Pfam PF00990 Diguanylate cyclase, GGDEF domain 613 770 2.1E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.40.50.2300 79 277 3.2E-5 T 11-10-2018 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SUPERFAMILY SSF55785 476 599 6.6E-19 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SMART SM00052 786 1033 7.4E-54 T 11-10-2018 IPR001633 EAL domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.20.20.450 775 1035 8.7E-75 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.30.450.20 491 603 2.0E-18 T 11-10-2018 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SMART SM00091 366 432 12.0 T 11-10-2018 IPR000014 PAS domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SMART SM00091 491 556 0.0099 T 11-10-2018 IPR000014 PAS domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.30.450.20 352 490 1.5E-9 T 11-10-2018 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SMART SM00267 602 774 6.0E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 Gene3D G3DSA:3.30.70.270 604 774 3.5E-46 T 11-10-2018 VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 609 773 2.2E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00620 27e1c4d9a7b2ea89460bd67070c17e31 1048 SUPERFAMILY SSF55073 618 774 4.08E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SMART SM00267 454 619 4.5E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SUPERFAMILY SSF55073 470 618 8.63E-37 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Gene3D G3DSA:3.30.70.270 469 624 1.6E-42 T 11-10-2018 VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Gene3D G3DSA:3.30.450.20 207 302 1.6E-35 T 11-10-2018 VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SUPERFAMILY SSF55785 352 462 4.89E-16 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 462 617 1.4E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Gene3D G3DSA:3.30.450.20 73 206 6.7E-30 T 11-10-2018 VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Gene3D G3DSA:3.30.450.20 339 468 7.0E-20 T 11-10-2018 VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Pfam PF13426 PAS domain 352 452 1.4E-9 T 11-10-2018 IPR000014 PAS domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SMART SM00091 340 407 7.4E-4 T 11-10-2018 IPR000014 PAS domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Pfam PF00990 Diguanylate cyclase, GGDEF domain 467 615 1.9E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 344 461 8.9E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SUPERFAMILY SSF103190 207 298 3.06E-22 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 Gene3D G3DSA:1.20.5.170 26 72 5.3E-22 T 11-10-2018 VV93_v1c04630 389f190cd630fad4b3bbc1ada5148ad5 626 SUPERFAMILY SSF103190 36 206 1.88E-42 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 Pfam PF13416 Bacterial extracellular solute-binding protein 45 315 1.9E-40 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 Gene3D G3DSA:3.40.190.10 134 323 1.5E-119 T 11-10-2018 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 SUPERFAMILY SSF53850 29 347 2.17E-92 T 11-10-2018 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 Gene3D G3DSA:3.40.190.10 34 317 1.5E-119 T 11-10-2018 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 94 107 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 250 269 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 295 321 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 169 188 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 51 72 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 206 225 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 78 92 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 151 165 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 35 51 4.1E-86 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15790 933bd58525301f6ce38b8a9d95d10bd0 350 PIRSF PIRSF019574 3 350 3.7E-123 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 SMART SM00267 515 692 4.2E-47 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 Gene3D G3DSA:3.30.450.40 165 338 5.2E-8 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 Pfam PF00990 Diguanylate cyclase, GGDEF domain 527 688 4.2E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 SUPERFAMILY SSF55781 335 505 5.23E-7 T 11-10-2018 VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 SUPERFAMILY SSF55073 531 693 6.12E-38 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 SUPERFAMILY SSF55781 172 325 4.8E-7 T 11-10-2018 VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 522 690 1.5E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33600 7dc26315cca7defc6ee34a74ca1f87d0 700 Gene3D G3DSA:3.30.70.270 511 694 2.7E-46 T 11-10-2018 VV93_v1c22050 b5eaeac73ed76c566baf8c41ef97f865 339 Gene3D G3DSA:3.30.530.50 96 206 1.5E-11 T 11-10-2018 VV93_v1c22050 b5eaeac73ed76c566baf8c41ef97f865 339 Gene3D G3DSA:3.30.310.170 220 339 2.2E-42 T 11-10-2018 VV93_v1c22050 b5eaeac73ed76c566baf8c41ef97f865 339 Pfam PF06804 NlpB/DapX lipoprotein 36 335 9.6E-107 T 11-10-2018 IPR010653 NlpB/DapX lipoprotein VV93_v1c22050 b5eaeac73ed76c566baf8c41ef97f865 339 PIRSF PIRSF026343 4 339 2.8E-127 T 11-10-2018 IPR014524 Outer membrane protein assembly factor BamC VV93_v1c22050 b5eaeac73ed76c566baf8c41ef97f865 339 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 4 337 33.995 T 11-10-2018 IPR014524 Outer membrane protein assembly factor BamC VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PIRSF PIRSF000099 1 427 3.7E-169 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 Pfam PF00815 Histidinol dehydrogenase 26 424 5.4E-171 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 1.0E-101 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 Gene3D G3DSA:3.40.50.1980 30 229 2.8E-125 T 11-10-2018 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 2.9E-166 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 SUPERFAMILY SSF53720 3 424 1.49E-92 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 42.345 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 VV93_v1c12640 fc9ece3f56f81c8aaeff455cf8fe8e67 431 Gene3D G3DSA:3.40.50.1980 231 346 2.8E-125 T 11-10-2018 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 194 427 2.0E-10 T 11-10-2018 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 34 423 4.2E-154 T 11-10-2018 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 Gene3D G3DSA:3.20.20.70 31 427 2.3E-111 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 316 405 1.0E-16 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 Pfam PF04055 Radical SAM superfamily 43 211 1.5E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 Pfam PF13353 4Fe-4S single cluster domain 43 160 1.0E-4 T 11-10-2018 VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 Pfam PF13186 Iron-sulfur cluster-binding domain 317 377 5.8E-7 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c36630 4d9dc377bea7336be4e43f3854a7fb25 434 SUPERFAMILY SSF102114 43 386 5.36E-39 T 11-10-2018 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 10 142 2.8E-48 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Pfam PF00994 Probable molybdopterin binding domain 366 502 7.6E-26 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:2.170.190.11 236 327 7.4E-134 T 11-10-2018 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 SUPERFAMILY SSF53218 363 508 1.06E-42 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 10 166 5.8E-44 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:3.90.105.10 213 360 7.4E-134 T 11-10-2018 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 439 472 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 362 499 1.0E-31 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 SMART SM00852 366 503 2.9E-39 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 SUPERFAMILY SSF63867 512 590 1.44E-22 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Pfam PF03454 MoeA C-terminal region (domain IV) 517 588 9.3E-21 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:2.20.25.120 53 85 7.5E-56 T 11-10-2018 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 SUPERFAMILY SSF52540 8 169 2.25E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:2.40.340.10 513 583 7.4E-134 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Pfam PF03453 MoeA N-terminal region (domain I and II) 194 353 3.3E-38 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 PIRSF PIRSF036618 1 592 0.0 T 11-10-2018 IPR012182 Bifunctional molybdenum cofactor biosynthesis MobB/MoeA VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:3.40.980.10 361 512 7.4E-134 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 SUPERFAMILY SSF63882 191 362 8.9E-48 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c16090 76f6a3ec6eebe25a21785587dd816644 592 Gene3D G3DSA:3.40.50.300 10 165 7.5E-56 T 11-10-2018 VV93_v1c38480 6e5f4ec53f1d8a05562f5132462ce345 438 Pfam PF07394 Protein of unknown function (DUF1501) 34 421 1.1E-71 T 11-10-2018 IPR010869 Protein of unknown function DUF1501 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 Pfam PF03466 LysR substrate binding domain 87 302 5.3E-13 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 SUPERFAMILY SSF53850 90 302 4.21E-16 T 11-10-2018 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 5.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 3.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 3.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 3.9E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 SUPERFAMILY SSF46785 4 86 1.75E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 Gene3D G3DSA:3.40.190.10 92 165 3.4E-12 T 11-10-2018 VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 Gene3D G3DSA:1.10.10.10 2 83 4.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c37530 95a116af9e447349b59b093c50dc91c9 304 Gene3D G3DSA:3.40.190.10 166 271 3.4E-12 T 11-10-2018 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Gene3D G3DSA:1.10.287.130 175 272 3.9E-26 T 11-10-2018 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SUPERFAMILY SSF55874 263 431 4.98E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SMART SM00448 451 564 2.8E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SUPERFAMILY SSF52172 451 568 1.17E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Gene3D G3DSA:3.40.50.2300 435 567 1.1E-38 T 11-10-2018 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SMART SM00387 321 432 9.5E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Gene3D G3DSA:3.30.565.10 273 434 8.9E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 5.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 5.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 5.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 429 5.8E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Pfam PF00072 Response regulator receiver domain 453 565 3.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 430 3.2E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SUPERFAMILY SSF47384 194 275 2.55E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 274 1.1E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c15580 df4d5874a7946d5c225bfd78d78f91bd 569 SMART SM00388 209 274 1.4E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 6.5E-24 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 SUPERFAMILY SSF46561 1 61 2.62E-23 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 Gene3D G3DSA:1.10.287.310 1 63 1.2E-31 T 11-10-2018 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 Pfam PF00831 Ribosomal L29 protein 4 60 2.5E-25 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03540 5273cc45afa3f4f8b8c3e126ef70d552 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 19.125 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03050 eda70a310348d8d43394624cc53a2c97 332 Gene3D G3DSA:3.40.50.720 2 119 2.4E-19 T 11-10-2018 VV93_v1c03050 eda70a310348d8d43394624cc53a2c97 332 SUPERFAMILY SSF55347 127 296 7.19E-24 T 11-10-2018 VV93_v1c03050 eda70a310348d8d43394624cc53a2c97 332 Gene3D G3DSA:3.30.360.10 120 319 2.0E-31 T 11-10-2018 VV93_v1c03050 eda70a310348d8d43394624cc53a2c97 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 118 5.3E-17 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VV93_v1c03050 eda70a310348d8d43394624cc53a2c97 332 SUPERFAMILY SSF51735 3 153 8.15E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c32320 25d9eb432360444e9ec8e9951bd035dc 144 PIRSF PIRSF028777 1 138 3.6E-52 T 11-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 VV93_v1c32320 25d9eb432360444e9ec8e9951bd035dc 144 Pfam PF03733 Inner membrane component domain 76 126 9.9E-18 T 11-10-2018 IPR005185 Inner membrane component domain VV93_v1c32320 25d9eb432360444e9ec8e9951bd035dc 144 Pfam PF03733 Inner membrane component domain 4 53 6.9E-14 T 11-10-2018 IPR005185 Inner membrane component domain VV93_v1c44600 8bc19ca9100b30e252cb30ce5573a250 327 SUPERFAMILY SSF53850 137 277 3.39E-10 T 11-10-2018 VV93_v1c44600 8bc19ca9100b30e252cb30ce5573a250 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 311 3.9E-88 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VV93_v1c44600 8bc19ca9100b30e252cb30ce5573a250 327 PIRSF PIRSF006470 1 326 2.9E-94 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c44600 8bc19ca9100b30e252cb30ce5573a250 327 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 285 2.1E-80 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c44600 8bc19ca9100b30e252cb30ce5573a250 327 Gene3D G3DSA:3.40.190.170 29 327 1.4E-107 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 Pfam PF02313 Fumarate reductase subunit D 11 123 5.0E-43 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 7 125 24.318 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 SUPERFAMILY SSF81343 7 125 1.44E-49 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 Gene3D G3DSA:1.20.1300.10 6 125 2.0E-43 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 PIRSF PIRSF000179 6 125 8.1E-55 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VV93_v1c28230 1bcf40be8f9cb235170140badf70c64f 125 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 11 125 1.0E-60 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 VV93_v1c40190 8711bb7b621d1050ea86aaf053846bab 590 SUPERFAMILY SSF58104 280 587 3.4E-68 T 11-10-2018 VV93_v1c40190 8711bb7b621d1050ea86aaf053846bab 590 SMART SM00283 325 586 1.1E-58 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c40190 8711bb7b621d1050ea86aaf053846bab 590 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 372 553 3.9E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c40190 8711bb7b621d1050ea86aaf053846bab 590 SMART SM01358 25 276 4.2E-6 T 11-10-2018 IPR032255 Helical bimodular sensor domain VV93_v1c40190 8711bb7b621d1050ea86aaf053846bab 590 Gene3D G3DSA:1.10.287.950 256 588 2.3E-65 T 11-10-2018 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 116 2.2E-29 T 11-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 SUPERFAMILY SSF55620 3 117 6.12E-37 T 11-10-2018 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 Gene3D G3DSA:3.30.1130.10 1 118 7.3E-46 T 11-10-2018 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 SMART SM00905 6 116 1.7E-48 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 Pfam PF02152 Dihydroneopterin aldolase 6 115 1.5E-32 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VV93_v1c05100 a8c4dba4229d4acbc2252b966b50eb01 119 TIGRFAM TIGR00526 folB_dom: FolB domain 4 117 1.9E-35 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 SUPERFAMILY SSF81271 3 61 4.9E-16 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 319 530 2.8E-50 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 73 632 6.2E-242 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 220 1.7E-13 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 SMART SM00863 171 220 1.6E-18 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Gene3D G3DSA:3.40.50.800 533 642 4.1E-30 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 535 547 6.1E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 363 386 6.1E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 465 493 6.1E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 330 358 6.1E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 508 521 6.1E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Pfam PF02824 TGS domain 4 61 1.3E-12 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 67 635 34.089 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Gene3D G3DSA:3.10.20.30 3 62 1.4E-22 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 SUPERFAMILY SSF52954 530 637 1.96E-32 T 11-10-2018 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 SUPERFAMILY SSF55681 244 527 1.38E-100 T 11-10-2018 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Pfam PF03129 Anticodon binding domain 542 631 4.5E-22 T 11-10-2018 IPR004154 Anticodon-binding VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Gene3D G3DSA:3.30.54.20 131 188 1.2E-62 T 11-10-2018 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Gene3D G3DSA:3.30.980.10 70 223 1.2E-62 T 11-10-2018 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 Gene3D G3DSA:3.30.930.10 224 532 1.3E-130 T 11-10-2018 VV93_v1c17050 fcf6b36e66f497db663cc92ed5bfb2a5 642 SUPERFAMILY SSF55186 65 242 6.93E-63 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SUPERFAMILY SSF55073 481 637 4.0E-38 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 153 186 61.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 315 348 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 113 146 18.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 275 308 270.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 355 388 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00028 193 226 380.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 Gene3D G3DSA:1.25.40.10 81 268 7.2E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 472 638 1.6E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SUPERFAMILY SSF48452 112 236 6.42E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 Pfam PF00990 Diguanylate cyclase, GGDEF domain 477 634 5.4E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SUPERFAMILY SSF48452 262 390 2.69E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 Gene3D G3DSA:3.30.70.270 461 639 4.9E-46 T 11-10-2018 VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 SMART SM00267 465 639 7.2E-47 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c15100 8bdcabb72f5330fcadb9f3c1149196ff 639 Gene3D G3DSA:1.25.40.10 273 384 1.8E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 Pfam PF00501 AMP-binding enzyme 34 397 3.7E-52 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 Gene3D G3DSA:3.40.50.12780 24 392 6.6E-65 T 11-10-2018 VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 53 485 2.8E-128 T 11-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 Gene3D G3DSA:3.30.300.30 393 493 5.5E-15 T 11-10-2018 VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 ProSitePatterns PS00455 Putative AMP-binding domain signature. 180 191 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c10410 38619e400dce9f43092222983d6ae7b3 494 SUPERFAMILY SSF56801 30 489 1.27E-82 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SUPERFAMILY SSF109604 899 995 1.98E-7 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Gene3D G3DSA:1.20.1480.50 562 651 3.4E-7 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SUPERFAMILY SSF109604 665 749 2.04E-7 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Gene3D G3DSA:3.40.190.10 376 467 1.8E-26 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SUPERFAMILY SSF53850 291 505 5.0E-20 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SMART SM00304 596 649 0.0054 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 296 506 3.6E-17 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SMART SM00471 669 980 0.0014 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Pfam PF13487 HD domain 897 962 5.1E-19 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Gene3D G3DSA:3.40.190.10 288 504 1.8E-26 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 SMART SM00062 293 503 0.0056 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Gene3D G3DSA:1.10.3210.10 880 1018 7.6E-23 T 11-10-2018 VV93_v1c14330 f497c538ece5a0f036e59c1888639df2 1042 Gene3D G3DSA:1.10.3210.10 652 755 2.6E-17 T 11-10-2018 VV93_v1c22430 9893f94b78209468f7797bbb410d013a 191 SUPERFAMILY SSF53697 1 189 1.48E-52 T 11-10-2018 VV93_v1c22430 9893f94b78209468f7797bbb410d013a 191 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 37.794 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VV93_v1c22430 9893f94b78209468f7797bbb410d013a 191 Gene3D G3DSA:3.40.50.10490 1 191 5.1E-72 T 11-10-2018 VV93_v1c22430 9893f94b78209468f7797bbb410d013a 191 Pfam PF13580 SIS domain 25 146 1.2E-30 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c22430 9893f94b78209468f7797bbb410d013a 191 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 1.9E-82 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Gene3D G3DSA:1.10.287.470 104 177 6.3E-9 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Gene3D G3DSA:2.40.50.100 295 333 5.2E-14 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Pfam PF13533 Biotin-lipoyl like 78 116 1.7E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Pfam PF13437 HlyD family secretion protein 302 413 6.8E-18 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 39 62 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 347 371 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 425 445 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 81 101 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 314 335 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 371 394 3.2E-39 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Gene3D G3DSA:1.10.287.470 237 294 5.2E-14 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 34 446 1.8E-94 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Gene3D G3DSA:2.40.30.170 334 422 5.2E-14 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 Gene3D G3DSA:2.40.50.100 76 181 6.3E-9 T 11-10-2018 VV93_v1c33730 6e0d515c99db59aeebd0f1e6e33790cb 446 SUPERFAMILY SSF111369 78 140 1.7E-5 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 187 268 5.6E-27 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 88 174 6.86E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 6 98 5.9E-17 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 18 86 1.2E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 189 260 2.7E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 104 171 1.2E-7 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 362 434 1.8E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 275 347 4.1E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Pfam PF00575 S1 RNA binding domain 449 520 8.9E-16 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 255 364 2.65E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PIRSF PIRSF002111 1 534 6.4E-218 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.0E-96 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 275 347 8.1E-27 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 190 260 7.7E-28 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 103 171 1.8E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 362 434 2.3E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 19 87 4.9E-4 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SMART SM00316 449 520 1.1E-20 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 189 277 1.42E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 444 528 2.5E-20 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 99 178 2.9E-5 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 347 438 5.97E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 4 112 1.97E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.6E-230 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 SUPERFAMILY SSF50249 429 539 7.38E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 358 443 1.5E-23 T 11-10-2018 VV93_v1c12160 838da8b9b914e31d0ca55317053f3798 556 Gene3D G3DSA:2.40.50.140 269 357 2.2E-31 T 11-10-2018 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 7.2E-14 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 Pfam PF00367 phosphotransferase system, EIIB 11 43 5.4E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 Gene3D G3DSA:3.30.1360.60 3 78 2.7E-23 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 7 461 3.2E-203 T 11-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 Pfam PF02378 Phosphotransferase system, EIIC 112 404 1.4E-33 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c08320 7d0c33cead9a8708a96fc41f3874e707 474 SUPERFAMILY SSF55604 9 81 1.29E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c12250 9c4aa559cde1a5911a6f8d1aace7ea81 276 Pfam PF00005 ABC transporter 31 180 5.7E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c12250 9c4aa559cde1a5911a6f8d1aace7ea81 276 SUPERFAMILY SSF52540 5 253 1.85E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12250 9c4aa559cde1a5911a6f8d1aace7ea81 276 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c12250 9c4aa559cde1a5911a6f8d1aace7ea81 276 SMART SM00382 39 239 7.4E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c12250 9c4aa559cde1a5911a6f8d1aace7ea81 276 Gene3D G3DSA:3.40.50.300 2 275 6.7E-86 T 11-10-2018 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 SUPERFAMILY SSF160544 250 355 2.49E-39 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 Gene3D G3DSA:3.40.1690.10 218 358 5.9E-57 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 1.3E-121 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 1.2E-134 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 7.9E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 7.9E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 7.9E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 7.9E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c21710 69ddf80cd6db2542c6e3b8bb80c5030b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 7.9E-40 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 VV93_v1c00970 cee0305e2caa23656aebb6e65f331949 73 Pfam PF10678 Protein of unknown function (DUF2492) 2 72 9.2E-24 T 11-10-2018 IPR019620 Putative metal-binding protein VV93_v1c00970 cee0305e2caa23656aebb6e65f331949 73 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 3 73 2.5E-24 T 11-10-2018 IPR019620 Putative metal-binding protein VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 SUPERFAMILY SSF53335 27 258 2.01E-52 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 Pfam PF01209 ubiE/COQ5 methyltransferase family 26 259 1.1E-102 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 45 60 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 34 259 1.5E-82 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 25 259 38.268 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 Gene3D G3DSA:3.40.50.150 40 260 7.5E-75 T 11-10-2018 VV93_v1c01640 41c80f1048dbf1dfb2635d000dd2a34b 260 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 167 181 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Pfam PF13437 HlyD family secretion protein 296 396 1.5E-16 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Gene3D G3DSA:2.40.50.100 58 88 2.4E-7 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 SUPERFAMILY SSF111369 57 127 1.09E-5 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Gene3D G3DSA:1.10.287.470 89 152 2.4E-7 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Gene3D G3DSA:1.10.287.470 220 295 2.5E-14 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 308 329 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 341 365 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 441 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 365 388 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 24 47 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 406 421 4.2E-40 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 17 441 2.5E-112 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Gene3D G3DSA:2.40.50.100 215 332 2.5E-14 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Gene3D G3DSA:2.40.30.170 333 417 2.5E-14 T 11-10-2018 VV93_v1c33170 c4383629d7e364d8751ae45f7eb00a34 442 Pfam PF13533 Biotin-lipoyl like 55 94 4.2E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c06750 960032bdd351cb09aacce7be23802d30 730 SUPERFAMILY SSF69322 68 372 2.48E-9 T 11-10-2018 VV93_v1c06750 960032bdd351cb09aacce7be23802d30 730 SUPERFAMILY SSF161098 408 516 2.45E-7 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c06750 960032bdd351cb09aacce7be23802d30 730 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 536 724 1.0E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c06750 960032bdd351cb09aacce7be23802d30 730 SUPERFAMILY SSF161098 504 716 1.44E-17 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c06750 960032bdd351cb09aacce7be23802d30 730 Gene3D G3DSA:1.10.3720.10 497 727 9.9E-21 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 18 347 1.9E-104 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 PIRSF PIRSF002465 14 351 4.5E-124 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 SUPERFAMILY SSF53659 16 348 3.29E-102 T 11-10-2018 VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 Gene3D G3DSA:3.40.718.10 14 352 2.9E-119 T 11-10-2018 VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 352 132.829 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 VV93_v1c11890 84d315ea3c00323bfb87e6df5bc8e524 353 Pfam PF02504 Fatty acid synthesis protein 17 339 2.4E-98 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Gene3D G3DSA:1.10.287.130 340 436 1.6E-26 T 11-10-2018 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SUPERFAMILY SSF47384 358 439 1.61E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SMART SM00388 373 438 3.2E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Gene3D G3DSA:3.40.50.12330 752 815 4.8E-20 T 11-10-2018 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Gene3D G3DSA:3.40.50.2300 816 880 9.7E-19 T 11-10-2018 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 8.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 8.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 8.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 8.0E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SUPERFAMILY SSF55874 427 604 1.83E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 601 3.5E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Gene3D G3DSA:3.30.565.10 437 606 5.8E-53 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Pfam PF00072 Response regulator receiver domain 760 873 9.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 438 1.6E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SMART SM00387 485 602 5.1E-39 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SUPERFAMILY SSF52172 756 876 2.28E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c41540 8fa3bdd72d5c417623256b27de25d570 881 SMART SM00448 758 875 3.0E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 205 312 1.2E-19 T 11-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 Gene3D G3DSA:1.20.272.10 209 317 2.3E-6 T 11-10-2018 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 11 194 4.7E-59 T 11-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 Gene3D G3DSA:3.40.50.300 1 166 8.8E-49 T 11-10-2018 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 SUPERFAMILY SSF48019 205 317 2.72E-23 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 SUPERFAMILY SSF52540 3 192 1.5E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11980 acc0e9311ec2522729ef075f9552c587 318 Pfam PF13177 DNA polymerase III, delta subunit 10 165 4.7E-43 T 11-10-2018 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 SUPERFAMILY SSF161070 3 472 2.62E-148 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 Pfam PF00209 Sodium:neurotransmitter symporter family 3 120 9.3E-41 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 Pfam PF00209 Sodium:neurotransmitter symporter family 121 468 7.7E-77 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 84 110 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 388 408 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 257 277 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 429 449 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c12030 8a29465d2b003250a380c064502ab24a 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 311 330 1.2E-36 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c11960 884cff06517efce79d1ea1619dac2a5d 338 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 6 334 32.696 T 11-10-2018 IPR003770 Endolytic murein transglycosylase VV93_v1c11960 884cff06517efce79d1ea1619dac2a5d 338 Pfam PF02618 YceG-like family 43 329 3.0E-81 T 11-10-2018 IPR003770 Endolytic murein transglycosylase VV93_v1c11960 884cff06517efce79d1ea1619dac2a5d 338 Gene3D G3DSA:3.30.160.60 303 338 2.9E-18 T 11-10-2018 VV93_v1c11960 884cff06517efce79d1ea1619dac2a5d 338 Gene3D G3DSA:1.10.8.1150 40 111 1.6E-5 T 11-10-2018 VV93_v1c11960 884cff06517efce79d1ea1619dac2a5d 338 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 6 337 5.8E-99 T 11-10-2018 IPR003770 Endolytic murein transglycosylase VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 418 531 2.4E-5 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 12 436 1.9E-137 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 SUPERFAMILY SSF52467 220 347 9.45E-9 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Gene3D G3DSA:3.40.50.1220 216 342 1.0E-41 T 11-10-2018 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 6 560 32.728 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 SUPERFAMILY SSF52518 9 179 1.07E-30 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Gene3D G3DSA:3.40.50.970 4 198 5.0E-58 T 11-10-2018 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 142 1.7E-27 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Gene3D G3DSA:3.40.50.970 376 564 7.2E-46 T 11-10-2018 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 Pfam PF16582 Middle domain of thiamine pyrophosphate 190 394 6.9E-44 T 11-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 SUPERFAMILY SSF52518 381 553 5.89E-24 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c10370 c5c09145ef6da5a7d87ce307c89e8bdc 564 PIRSF PIRSF004983 3 564 1.1E-192 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 VV93_v1c29700 de485050d70e5f78e2cd8c0fecf5fd3e 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 52 232 3.2E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c29700 de485050d70e5f78e2cd8c0fecf5fd3e 238 SUPERFAMILY SSF161098 33 219 3.01E-46 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c29700 de485050d70e5f78e2cd8c0fecf5fd3e 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 30 128 1.5E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c29700 de485050d70e5f78e2cd8c0fecf5fd3e 238 Gene3D G3DSA:1.10.3720.10 25 234 7.1E-55 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 360 77.266 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 Gene3D G3DSA:3.40.50.150 2 353 3.6E-76 T 11-10-2018 VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 359 1.6E-169 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 Gene3D G3DSA:3.40.1350.30 40 196 3.6E-76 T 11-10-2018 VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 292 323 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 SUPERFAMILY SSF53335 2 359 1.39E-54 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c32180 e95199f728dd26461e5554f65ee06a03 360 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 193 359 3.9E-21 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 VV93_v1c09930 523bb08b3ecbf60cbfe56f3784ac350f 769 Pfam PF03176 MMPL family 195 399 4.2E-15 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 VV93_v1c09930 523bb08b3ecbf60cbfe56f3784ac350f 769 Gene3D G3DSA:1.20.1640.10 602 709 3.7E-6 T 11-10-2018 VV93_v1c09930 523bb08b3ecbf60cbfe56f3784ac350f 769 SUPERFAMILY SSF82866 192 398 1.44E-18 T 11-10-2018 VV93_v1c09930 523bb08b3ecbf60cbfe56f3784ac350f 769 SUPERFAMILY SSF82866 637 763 5.62E-21 T 11-10-2018 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Pfam PF01627 Hpt domain 665 747 1.9E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SMART SM00388 239 304 8.2E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Gene3D G3DSA:3.30.565.10 306 470 6.3E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Gene3D G3DSA:1.20.1480.50 136 227 2.8E-9 T 11-10-2018 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Gene3D G3DSA:1.20.120.160 636 751 1.1E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SUPERFAMILY SSF47226 640 753 2.36E-19 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Gene3D G3DSA:3.40.50.2300 471 617 3.2E-40 T 11-10-2018 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 6.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 6.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 463 6.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 6.9E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SUPERFAMILY SSF158472 175 221 1.12E-5 T 11-10-2018 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SMART SM00304 172 224 2.4E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 303 6.3E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SMART SM00387 351 466 3.6E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SMART SM00448 490 605 2.7E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SUPERFAMILY SSF55874 293 462 8.38E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SUPERFAMILY SSF47384 223 304 3.34E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Pfam PF00072 Response regulator receiver domain 492 605 2.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 351 463 6.9E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 Gene3D G3DSA:1.10.287.130 228 305 6.3E-21 T 11-10-2018 VV93_v1c15030 5cce0abc85250be8e7920d01f3539930 762 SUPERFAMILY SSF52172 487 610 7.83E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SUPERFAMILY SSF55021 1 68 5.6E-6 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Gene3D G3DSA:3.40.50.300 192 375 6.1E-57 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 290 305 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SMART SM00382 225 368 5.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Pfam PF00158 Sigma-54 interaction domain 206 370 1.2E-57 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SUPERFAMILY SSF55785 84 174 2.27E-10 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Gene3D G3DSA:3.30.450.20 82 186 7.1E-21 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 417 426 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Pfam PF00989 PAS fold 84 132 4.2E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Gene3D G3DSA:1.10.8.60 377 451 8.0E-16 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 465 513 2.7E-28 T 11-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 83 139 8.4E-6 T 11-10-2018 IPR000014 PAS domain VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SMART SM00091 80 146 3.9E-8 T 11-10-2018 IPR000014 PAS domain VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SUPERFAMILY SSF52540 205 445 3.48E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Gene3D G3DSA:3.30.70.260 1 80 8.7E-26 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 Gene3D G3DSA:1.10.10.60 455 513 2.0E-25 T 11-10-2018 VV93_v1c18390 68115f82865cba8454887f992adcc845 514 SUPERFAMILY SSF46689 460 512 6.57E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PIRSF PIRSF000350 1 445 2.7E-82 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 451 6.2E-215 T 11-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 Gene3D G3DSA:3.30.390.30 339 451 1.3E-47 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 SUPERFAMILY SSF51905 1 362 5.51E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 SUPERFAMILY SSF55424 337 451 1.39E-35 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 425 445 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 403 418 8.4E-65 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 319 9.9E-70 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 Gene3D G3DSA:3.50.50.60 144 261 1.5E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 Gene3D G3DSA:3.50.50.60 5 315 1.5E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 450 1.4E-33 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 2.1E-28 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.1E-28 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 2.1E-28 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 2.1E-28 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 2.1E-28 T 11-10-2018 VV93_v1c00580 cf0c53489ebc03ed9d405788d819ed49 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 SMART SM00421 141 198 6.9E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 Pfam PF00072 Response regulator receiver domain 5 114 6.5E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 1.3E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 1.3E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 1.3E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 SUPERFAMILY SSF52172 1 126 4.41E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 SMART SM00448 3 113 3.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 Gene3D G3DSA:3.40.50.12740 3 203 1.3E-52 T 11-10-2018 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 197 1.6E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 SUPERFAMILY SSF46894 126 199 5.44E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c40040 b7302b14228a7bd780039f74872a71a3 203 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c37070 b506c07c94639a198ffa15c9d99d9e24 184 Pfam PF13275 S4 domain 29 91 3.8E-22 T 11-10-2018 VV93_v1c37070 b506c07c94639a198ffa15c9d99d9e24 184 SUPERFAMILY SSF55174 18 92 5.15E-17 T 11-10-2018 VV93_v1c37070 b506c07c94639a198ffa15c9d99d9e24 184 Gene3D G3DSA:3.10.290.10 20 93 8.0E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Gene3D G3DSA:3.30.450.20 9 108 1.9E-5 T 11-10-2018 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 SUPERFAMILY SSF55874 177 338 1.44E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Gene3D G3DSA:3.30.565.10 190 343 2.6E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Pfam PF13188 PAS domain 18 59 1.9E-6 T 11-10-2018 IPR000014 PAS domain VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Gene3D G3DSA:1.10.287.130 109 185 1.2E-9 T 11-10-2018 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 SUPERFAMILY SSF47384 117 188 3.34E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 336 2.3E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 315 1.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 334 1.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 268 282 1.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 296 1.2E-17 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 SMART SM00388 122 188 6.8E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 SMART SM00387 231 337 2.9E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 Pfam PF00512 His Kinase A (phospho-acceptor) domain 122 186 4.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c21870 5fedfe8774dc4cd16f584f8c7f2def1b 344 SUPERFAMILY SSF55785 18 85 2.3E-7 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c19280 ce6e87830eb0e3407bb952e27643e203 176 SUPERFAMILY SSF52540 4 171 8.07E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c19280 ce6e87830eb0e3407bb952e27643e203 176 Pfam PF13521 AAA domain 4 167 5.3E-39 T 11-10-2018 IPR038727 NadR/Ttd14, AAA domain VV93_v1c42760 cb4f54c53702e17c14d811fd2b3fbc6c 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 16 345 3.2E-142 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VV93_v1c42760 cb4f54c53702e17c14d811fd2b3fbc6c 354 Gene3D G3DSA:1.20.1530.20 9 345 5.3E-26 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily VV93_v1c42760 cb4f54c53702e17c14d811fd2b3fbc6c 354 PIRSF PIRSF005508 3 354 4.7E-139 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 VV93_v1c42760 cb4f54c53702e17c14d811fd2b3fbc6c 354 Pfam PF01758 Sodium Bile acid symporter family 61 257 5.9E-61 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 Pfam PF13599 Pentapeptide repeats (9 copies) 99 166 2.7E-11 T 11-10-2018 IPR001646 Pentapeptide repeat VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 SUPERFAMILY SSF141571 2 51 7.46E-10 T 11-10-2018 VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 SUPERFAMILY SSF141571 53 216 1.18E-38 T 11-10-2018 VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 Pfam PF00805 Pentapeptide repeats (8 copies) 55 83 0.0036 T 11-10-2018 IPR001646 Pentapeptide repeat VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 Pfam PF00805 Pentapeptide repeats (8 copies) 12 42 3.7E-6 T 11-10-2018 IPR001646 Pentapeptide repeat VV93_v1c43690 75dc2567f73af0cce00625dc69317ee4 218 Gene3D G3DSA:2.160.20.80 3 217 2.5E-63 T 11-10-2018 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SMART SM00304 157 209 8.2E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SMART SM00387 318 426 1.9E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SUPERFAMILY SSF47384 194 275 2.55E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SUPERFAMILY SSF55874 265 424 7.86E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 Gene3D G3DSA:1.10.287.130 161 276 8.7E-22 T 11-10-2018 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 424 1.7E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SMART SM00388 210 275 1.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 Gene3D G3DSA:3.30.565.10 280 426 4.4E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 Pfam PF00672 HAMP domain 159 204 2.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 274 6.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 SUPERFAMILY SSF158472 158 208 9.81E-5 T 11-10-2018 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 9.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 9.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c32360 2300aa73418af9dec7ee8e15ab7437a3 426 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 9.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c32350 58449d72008d52be5cfffdc1fdf4e954 118 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c32350 58449d72008d52be5cfffdc1fdf4e954 118 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 117 1.4E-34 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c32350 58449d72008d52be5cfffdc1fdf4e954 118 Gene3D G3DSA:1.10.3830.10 3 118 4.8E-39 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 697 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 113.307 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SMART SM00889 485 603 8.5E-76 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SUPERFAMILY SSF50447 271 409 5.08E-36 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 PRINTS PR00315 GTP-binding elongation factor signature 58 66 9.4E-17 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 PRINTS PR00315 GTP-binding elongation factor signature 101 112 9.4E-17 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 PRINTS PR00315 GTP-binding elongation factor signature 85 95 9.4E-17 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 PRINTS PR00315 GTP-binding elongation factor signature 137 146 9.4E-17 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 PRINTS PR00315 GTP-binding elongation factor signature 12 25 9.4E-17 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SUPERFAMILY SSF54211 484 604 7.59E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Gene3D G3DSA:3.30.230.10 489 693 9.5E-92 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Pfam PF03144 Elongation factor Tu domain 2 329 396 4.6E-18 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SUPERFAMILY SSF52540 6 288 1.97E-107 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Pfam PF14492 Elongation Factor G, domain II 409 483 2.4E-33 T 11-10-2018 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 8.0E-35 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Gene3D G3DSA:2.40.30.10 299 405 3.3E-48 T 11-10-2018 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Gene3D G3DSA:3.30.70.240 609 680 9.5E-92 T 11-10-2018 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SUPERFAMILY SSF54980 608 695 6.71E-30 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Pfam PF03764 Elongation factor G, domain IV 484 603 1.6E-48 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SMART SM00838 605 693 1.5E-57 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 3.4E-67 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 SUPERFAMILY SSF54980 407 485 8.99E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Gene3D G3DSA:3.40.50.300 1 298 9.9E-117 T 11-10-2018 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Gene3D G3DSA:3.30.70.870 410 488 4.1E-32 T 11-10-2018 VV93_v1c27580 5a62b31effbd9ea7c0bb8e1d2e377e0e 699 Pfam PF00679 Elongation factor G C-terminus 605 691 5.8E-31 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 SUPERFAMILY SSF47819 315 390 7.85E-20 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Pfam PF00570 HRDC domain 232 298 1.6E-10 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 SUPERFAMILY SSF47819 212 320 8.94E-24 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Gene3D G3DSA:3.30.420.10 20 212 5.8E-68 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Gene3D G3DSA:1.10.150.80 215 312 8.9E-18 T 11-10-2018 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 TIGRFAM TIGR01388 rnd: ribonuclease D 24 389 3.2E-142 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Pfam PF01612 3'-5' exonuclease 22 189 2.3E-41 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 SMART SM00474 22 190 5.3E-46 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 SUPERFAMILY SSF53098 17 228 4.32E-71 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Hamap MF_01899 Ribonuclease D [rnd]. 22 389 42.861 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 VV93_v1c09770 97438856bfaf6c9181ab113fbfc6dcc5 390 Gene3D G3DSA:1.10.150.80 313 390 4.8E-26 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.70.1430 40 794 5.2E-288 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82714 182 263 1.44E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82693 553 650 8.89E-22 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.2090.10 178 268 5.2E-288 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.70.1440 648 843 5.2E-288 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82866 782 1008 2.88E-46 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82693 136 323 1.2E-21 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.2E-75 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82693 41 130 2.25E-23 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 3.8E-277 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.70.1430 555 647 5.2E-288 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.70.1320 134 325 5.2E-288 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82714 701 783 1.96E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:3.30.2090.10 698 786 5.2E-288 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:1.20.1640.10 501 1001 5.2E-288 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 SUPERFAMILY SSF82866 290 489 7.32E-47 T 11-10-2018 VV93_v1c00330 d619a0851d1155aaff31794ea382d443 1039 Gene3D G3DSA:1.20.1640.10 10 500 5.2E-288 T 11-10-2018 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Pfam PF00009 Elongation factor Tu GTP binding domain 8 197 9.3E-57 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Gene3D G3DSA:3.40.50.300 5 202 2.2E-68 T 11-10-2018 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 SUPERFAMILY SSF52540 5 211 1.06E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 PRINTS PR00315 GTP-binding elongation factor signature 91 102 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 SUPERFAMILY SSF50447 155 303 1.04E-35 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 SUPERFAMILY SSF54980 402 516 1.39E-27 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Gene3D G3DSA:2.40.30.10 203 303 4.9E-35 T 11-10-2018 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Gene3D G3DSA:3.30.70.240 393 486 1.4E-129 T 11-10-2018 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 9 603 1.1E-295 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Pfam PF00679 Elongation factor G C-terminus 399 480 7.0E-23 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Gene3D G3DSA:2.40.50.250 487 603 1.4E-129 T 11-10-2018 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 154 1.1E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 SUPERFAMILY SSF54980 306 391 3.35E-15 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Pfam PF03144 Elongation factor Tu domain 2 223 293 1.4E-10 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c01850 fdc7b275982ad846a937d4ddd3f1a9f6 609 Gene3D G3DSA:3.30.70.870 310 594 1.4E-129 T 11-10-2018 VV93_v1c28870 1f1148fd4f9a5f1ca9b79336f0eee913 145 SUPERFAMILY SSF55729 10 118 3.92E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c28870 1f1148fd4f9a5f1ca9b79336f0eee913 145 Gene3D G3DSA:3.40.630.30 15 138 2.3E-10 T 11-10-2018 VV93_v1c28870 1f1148fd4f9a5f1ca9b79336f0eee913 145 Pfam PF13673 Acetyltransferase (GNAT) domain 32 117 4.7E-10 T 11-10-2018 IPR000182 GNAT domain VV93_v1c07410 9a4634c6512a81064ec265f9c76da78f 211 Pfam PF11726 Inovirus Gp2 35 210 4.4E-55 T 11-10-2018 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 Pfam PF04542 Sigma-70 region 2 33 99 1.0E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 SUPERFAMILY SSF88946 27 109 2.38E-21 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 179 1.9E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 Gene3D G3DSA:1.10.1740.10 12 95 1.0E-18 T 11-10-2018 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 SUPERFAMILY SSF88659 120 180 3.18E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 Pfam PF08281 Sigma-70, region 4 123 175 5.8E-10 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 Gene3D G3DSA:1.10.10.10 117 181 1.3E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19480 551f998f6e449c5e4708d33b9cf0d3a7 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 55 86 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 Pfam PF04542 Sigma-70 region 2 33 99 1.0E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 SUPERFAMILY SSF88946 27 109 2.38E-21 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 179 1.9E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 Gene3D G3DSA:1.10.1740.10 12 95 1.0E-18 T 11-10-2018 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 SUPERFAMILY SSF88659 120 180 3.18E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 Pfam PF08281 Sigma-70, region 4 123 175 5.8E-10 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 Gene3D G3DSA:1.10.10.10 117 181 1.3E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c21450 551f998f6e449c5e4708d33b9cf0d3a7 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 55 86 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 96 107 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 TIGRFAM TIGR00191 thrB: homoserine kinase 3 313 8.5E-109 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 Gene3D G3DSA:3.30.70.890 174 283 1.0E-89 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 Hamap MF_00384 Homoserine kinase [thrB]. 5 314 29.288 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PRINTS PR00958 Homoserine kinase signature 181 198 2.1E-31 T 11-10-2018 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PRINTS PR00958 Homoserine kinase signature 103 118 2.1E-31 T 11-10-2018 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PRINTS PR00958 Homoserine kinase signature 10 25 2.1E-31 T 11-10-2018 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PRINTS PR00958 Homoserine kinase signature 143 156 2.1E-31 T 11-10-2018 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PRINTS PR00958 Homoserine kinase signature 260 275 2.1E-31 T 11-10-2018 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 SUPERFAMILY SSF54211 3 191 2.2E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 Pfam PF08544 GHMP kinases C terminal 218 292 1.2E-9 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 Gene3D G3DSA:3.30.230.10 5 173 1.0E-89 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 Pfam PF00288 GHMP kinases N terminal domain 90 156 5.5E-13 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 SUPERFAMILY SSF55060 178 294 9.35E-33 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c05900 7406f65fcf7ebc3bc6456e9a985eb701 318 PIRSF PIRSF000676 1 316 9.3E-79 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:3.30.420.10 329 544 1.7E-68 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:3.30.70.370 666 927 7.8E-114 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:3.40.50.1010 9 284 9.5E-95 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SMART SM00474 332 519 9.8E-41 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 657 679 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 702 725 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 756 781 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 815 826 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 793 804 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 680 695 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 878 891 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 732 745 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 PRINTS PR00868 DNA-polymerase family A (pol I) signature 847 863 2.1E-78 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SMART SM00482 688 895 5.6E-119 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Pfam PF01612 3'-5' exonuclease 332 516 2.5E-38 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SUPERFAMILY SSF56672 526 931 5.56E-159 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:1.20.1060.10 545 660 1.7E-42 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 TIGRFAM TIGR00593 pola: DNA polymerase I 9 931 1.4E-288 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:1.10.150.20 174 253 9.5E-95 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 6.5E-55 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SMART SM00475 7 267 9.8E-123 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SUPERFAMILY SSF88723 7 170 1.86E-58 T 11-10-2018 IPR029060 PIN-like domain superfamily VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 5.6E-28 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Pfam PF00476 DNA polymerase family A 553 928 3.7E-157 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SUPERFAMILY SSF47807 171 291 2.54E-29 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 ProSitePatterns PS00447 DNA polymerase family A signature. 756 775 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SMART SM00279 173 208 1.2E-13 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 Gene3D G3DSA:1.10.150.20 711 854 7.8E-114 T 11-10-2018 VV93_v1c01730 80f34bf5ad1ff879346e8bc5a5073679 931 SUPERFAMILY SSF53098 335 520 5.24E-54 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 Gene3D G3DSA:1.10.10.920 371 463 4.5E-34 T 11-10-2018 VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 Pfam PF04055 Radical SAM superfamily 63 234 3.7E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 Gene3D G3DSA:3.80.30.20 7 369 8.3E-138 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 Pfam PF06969 HemN C-terminal domain 369 437 7.5E-11 T 11-10-2018 IPR010723 HemN, C-terminal VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 PIRSF PIRSF000167 9 460 2.7E-172 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 SUPERFAMILY SSF102114 12 450 4.58E-143 T 11-10-2018 VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 14 463 5.9E-208 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 VV93_v1c01790 3640fd3cc66637adc4aae7f82389ce89 463 SMART SM00729 58 278 3.1E-52 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c02050 f6d8666eee78817e4fafc6ea1f77e75a 163 Pfam PF04612 Type II secretion system (T2SS), protein M 7 162 2.7E-55 T 11-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VV93_v1c02050 f6d8666eee78817e4fafc6ea1f77e75a 163 PIRSF PIRSF006291 2 162 2.4E-40 T 11-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VV93_v1c02050 f6d8666eee78817e4fafc6ea1f77e75a 163 Gene3D G3DSA:3.30.1360.100 85 163 8.0E-31 T 11-10-2018 VV93_v1c02050 f6d8666eee78817e4fafc6ea1f77e75a 163 SUPERFAMILY SSF103054 85 162 5.23E-24 T 11-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 PIRSF PIRSF028788 1 197 1.2E-50 T 11-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 SUPERFAMILY SSF159894 5 103 1.54E-30 T 11-10-2018 VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 Pfam PF04994 TfoX C-terminal domain 115 194 1.0E-31 T 11-10-2018 IPR007077 TfoX, C-terminal VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 Pfam PF04993 TfoX N-terminal domain 12 103 5.6E-30 T 11-10-2018 IPR007076 TfoX, N-terminal VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 Gene3D G3DSA:3.30.1460.30 1 104 5.0E-36 T 11-10-2018 VV93_v1c20180 014fdb82d3532240dad03560edd86b49 197 Gene3D G3DSA:1.10.150.20 114 196 1.2E-23 T 11-10-2018 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 Pfam PF00216 Bacterial DNA-binding protein 1 91 9.0E-31 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 92 4.3E-49 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 SMART SM00411 1 91 5.8E-43 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 Gene3D G3DSA:4.10.520.10 40 92 1.8E-29 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 Gene3D G3DSA:4.10.520.10 2 39 1.2E-11 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 93 30.501 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 SUPERFAMILY SSF47729 1 91 4.12E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c12170 84361339b5b8d15a8be4c0eec922102b 93 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VV93_v1c41300 c64c95690062d6073d5f5775a6f09b0c 238 SUPERFAMILY SSF51366 14 224 4.71E-50 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c41300 c64c95690062d6073d5f5775a6f09b0c 238 Gene3D G3DSA:3.20.20.70 3 230 1.3E-79 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c41300 c64c95690062d6073d5f5775a6f09b0c 238 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 13 227 34.515 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 VV93_v1c41300 c64c95690062d6073d5f5775a6f09b0c 238 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 37 227 1.9E-83 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 5 489 34.791 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 SUPERFAMILY SSF63418 5 107 1.44E-22 T 11-10-2018 IPR035911 MurE/MurF, N-terminal VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Pfam PF01225 Mur ligase family, catalytic domain 25 103 2.5E-13 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 SUPERFAMILY SSF53244 338 489 9.62E-51 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Gene3D G3DSA:3.40.1190.10 108 340 2.5E-81 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 SUPERFAMILY SSF53623 109 335 7.85E-74 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 421 1.7E-24 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Gene3D G3DSA:3.90.190.20 345 492 6.6E-57 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Pfam PF08245 Mur ligase middle domain 115 316 3.9E-53 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 Gene3D G3DSA:3.40.1390.10 3 107 1.7E-28 T 11-10-2018 VV93_v1c05520 9583c3866665270078c0eb5f4c148844 493 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 489 1.0E-174 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 Gene3D G3DSA:1.10.3880.10 1 90 2.1E-39 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.3E-42 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 6.0E-40 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 SUPERFAMILY SSF111148 1 89 7.98E-41 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.501 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VV93_v1c25910 0fc62c55139b9efeae00918bf75a3b08 90 PIRSF PIRSF029827 1 90 1.9E-43 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 VV93_v1c42290 6135199c37406a20b5344c8f91951301 427 Gene3D G3DSA:3.30.559.10 9 199 2.0E-39 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c42290 6135199c37406a20b5344c8f91951301 427 SUPERFAMILY SSF52777 9 183 5.63E-31 T 11-10-2018 VV93_v1c42290 6135199c37406a20b5344c8f91951301 427 Gene3D G3DSA:3.30.559.30 214 424 4.4E-21 T 11-10-2018 VV93_v1c42290 6135199c37406a20b5344c8f91951301 427 SUPERFAMILY SSF52777 189 418 2.22E-18 T 11-10-2018 VV93_v1c42290 6135199c37406a20b5344c8f91951301 427 Pfam PF00668 Condensation domain 7 417 2.5E-44 T 11-10-2018 IPR001242 Condensation domain VV93_v1c27200 885acbdb4538752545a3b8cc0a6a4526 170 Gene3D G3DSA:2.30.30.830 90 170 1.1E-23 T 11-10-2018 VV93_v1c27200 885acbdb4538752545a3b8cc0a6a4526 170 PIRSF PIRSF016481 1 170 1.8E-48 T 11-10-2018 IPR007446 Pilus assembly protein PilP VV93_v1c27200 885acbdb4538752545a3b8cc0a6a4526 170 Pfam PF04351 Pilus assembly protein, PilP 24 169 3.2E-40 T 11-10-2018 IPR007446 Pilus assembly protein PilP VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 SUPERFAMILY SSF103088 157 287 2.22E-27 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 Gene3D G3DSA:2.60.40.2540 22 175 1.4E-57 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 ProSitePatterns PS01068 OmpA-like domain. 220 264 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 45 63 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 104 121 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 3 27 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 204 230 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 271 291 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 123 145 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 28 44 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 85 103 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 174 201 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 233 250 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 251 270 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 148 167 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 66 84 1.2E-154 T 11-10-2018 VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 Pfam PF00691 OmpA family 187 282 5.1E-19 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c11030 07d62250433da42d71eea9be6ee65468 293 Gene3D G3DSA:3.30.1330.60 176 293 5.7E-39 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 5.3E-16 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 5.3E-16 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 5.3E-16 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 5.3E-16 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 5.3E-16 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00397 Sirohaem Fe-binding site signature 670 688 8.5E-7 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00397 Sirohaem Fe-binding site signature 627 645 8.5E-7 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Gene3D G3DSA:3.30.413.10 622 788 3.2E-35 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Gene3D G3DSA:3.50.50.60 108 243 1.1E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PIRSF PIRSF037149 1 826 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 1.1E-10 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 1.1E-10 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.1E-10 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 1.1E-10 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 SUPERFAMILY SSF51905 3 189 4.85E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 SUPERFAMILY SSF51905 147 305 1.67E-24 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 670 686 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 283 5.7E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 4 791 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 SUPERFAMILY SSF55124 493 632 1.1E-27 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Gene3D G3DSA:3.50.50.60 5 280 1.1E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 551 612 5.9E-11 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 SUPERFAMILY SSF56014 624 799 1.83E-50 T 11-10-2018 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Pfam PF04324 BFD-like [2Fe-2S] binding domain 414 462 2.1E-14 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 623 748 3.0E-19 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38870 c15ce1951fc00438936256d1a5f299fe 827 Gene3D G3DSA:1.10.10.1100 414 468 9.5E-13 T 11-10-2018 VV93_v1c34140 c1bb6371e90c1636af6edfd216de1634 183 Pfam PF01923 Cobalamin adenosyltransferase 26 162 4.0E-14 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VV93_v1c34140 c1bb6371e90c1636af6edfd216de1634 183 SUPERFAMILY SSF89028 13 175 9.42E-36 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VV93_v1c34140 c1bb6371e90c1636af6edfd216de1634 183 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 34 155 1.0E-47 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VV93_v1c34140 c1bb6371e90c1636af6edfd216de1634 183 Gene3D G3DSA:1.20.1200.10 23 179 3.3E-22 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 SUPERFAMILY SSF53850 92 301 4.75E-30 T 11-10-2018 VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 Gene3D G3DSA:3.40.190.10 92 298 2.8E-33 T 11-10-2018 VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 Pfam PF03466 LysR substrate binding domain 98 300 5.0E-14 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 SUPERFAMILY SSF46785 6 87 2.92E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 Gene3D G3DSA:1.10.10.10 3 89 8.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c18240 7fc81630b065229d1b89458f12c20d10 305 Gene3D G3DSA:3.40.190.10 176 274 2.8E-33 T 11-10-2018 VV93_v1c29270 79b5a9b63c5d95360ab7c6895d97309d 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 9 120 4.6E-23 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 VV93_v1c29270 79b5a9b63c5d95360ab7c6895d97309d 126 TIGRFAM TIGR00494 crcB: protein CrcB 10 123 4.1E-29 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 VV93_v1c29270 79b5a9b63c5d95360ab7c6895d97309d 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 7 125 19.031 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 VV93_v1c22520 1b88d323597e7069d69226ba1fb42586 255 Gene3D G3DSA:3.40.50.150 53 188 1.3E-14 T 11-10-2018 VV93_v1c22520 1b88d323597e7069d69226ba1fb42586 255 SUPERFAMILY SSF53335 73 212 1.54E-20 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c22520 1b88d323597e7069d69226ba1fb42586 255 Pfam PF08241 Methyltransferase domain 74 125 2.9E-9 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 SMART SM00448 6 118 1.5E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 SUPERFAMILY SSF109604 146 348 1.16E-32 T 11-10-2018 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 Gene3D G3DSA:3.40.50.2300 2 139 7.1E-41 T 11-10-2018 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 Gene3D G3DSA:1.10.3210.10 145 362 6.0E-80 T 11-10-2018 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 SUPERFAMILY SSF52172 6 160 2.28E-42 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 Pfam PF13487 HD domain 230 300 2.0E-18 T 11-10-2018 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 Pfam PF00072 Response regulator receiver domain 8 118 4.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35880 910de4f7f24f2a5604792e992aca9662 378 SMART SM00471 167 318 6.8E-9 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Gene3D G3DSA:1.10.150.20 174 232 2.1E-14 T 11-10-2018 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 341 4.9E-6 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 SUPERFAMILY SSF100879 245 353 3.14E-24 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 SUPERFAMILY SSF56672 4 238 3.11E-93 T 11-10-2018 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Hamap MF_01113 DNA polymerase IV [dinB]. 5 353 37.163 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Gene3D G3DSA:2.30.40.20 15 72 1.9E-27 T 11-10-2018 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Gene3D G3DSA:3.30.1490.100 241 354 5.9E-25 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Pfam PF00817 impB/mucB/samB family 11 158 8.7E-49 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VV93_v1c22990 f85618fe7953e9f5fe6218e3d4d1b977 354 Gene3D G3DSA:3.30.70.270 73 173 6.5E-38 T 11-10-2018 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Gene3D G3DSA:3.30.499.10 683 865 2.3E-71 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Gene3D G3DSA:3.30.499.10 402 529 3.7E-148 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 SUPERFAMILY SSF53732 379 860 1.44E-146 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 2.2E-40 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 SUPERFAMILY SSF52016 162 372 4.12E-71 T 11-10-2018 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 PIRSF PIRSF036687 1 859 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.7E-99 T 11-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 853 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Gene3D G3DSA:1.25.40.310 1 161 3.7E-71 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Gene3D G3DSA:3.20.19.10 162 361 3.5E-82 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Gene3D G3DSA:3.40.1060.10 385 681 3.7E-148 T 11-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 SUPERFAMILY SSF74778 2 160 1.57E-67 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c24660 133bfd27fd35089d653766d89397bbff 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 1.3E-65 T 11-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 VV93_v1c42700 f3434264b63f0d2fdf11bc677b2da44e 163 Gene3D G3DSA:1.25.40.10 49 154 1.2E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c42700 f3434264b63f0d2fdf11bc677b2da44e 163 Pfam PF12688 Tetratrico peptide repeat 44 156 2.6E-12 T 11-10-2018 VV93_v1c42700 f3434264b63f0d2fdf11bc677b2da44e 163 SMART SM00028 72 105 0.0054 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c42700 f3434264b63f0d2fdf11bc677b2da44e 163 SMART SM00028 35 68 220.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c42700 f3434264b63f0d2fdf11bc677b2da44e 163 SUPERFAMILY SSF48452 5 152 1.61E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c04740 8943d2a3ff956ba5a45bc71c89c67162 360 Gene3D G3DSA:3.40.190.170 36 346 6.8E-118 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VV93_v1c04740 8943d2a3ff956ba5a45bc71c89c67162 360 PIRSF PIRSF039026 5 360 2.0E-133 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like VV93_v1c04740 8943d2a3ff956ba5a45bc71c89c67162 360 Gene3D G3DSA:3.40.190.10 154 325 6.8E-118 T 11-10-2018 VV93_v1c04740 8943d2a3ff956ba5a45bc71c89c67162 360 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 325 6.5E-74 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SMART SM00278 447 466 100.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SMART SM00278 545 564 5.1 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SMART SM00278 481 500 6.7 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SMART SM00532 4 449 1.1E-275 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 665 4.9E-263 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:2.40.50.140 319 391 1.3E-34 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF14520 Helix-hairpin-helix domain 447 501 1.1E-5 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF12826 Helix-hairpin-helix motif 511 574 7.3E-24 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:3.40.50.10190 586 669 4.6E-25 T 11-10-2018 IPR036420 BRCT domain superfamily VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:1.10.150.20 507 585 1.8E-29 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SUPERFAMILY SSF50249 319 401 3.43E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SUPERFAMILY SSF56091 5 317 4.8E-123 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:1.10.150.20 433 506 1.1E-28 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SUPERFAMILY SSF47781 404 584 5.19E-61 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 409 435 1.6E-10 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 595 669 3.1E-11 T 11-10-2018 IPR001357 BRCT domain VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SUPERFAMILY SSF52113 596 668 4.86E-17 T 11-10-2018 IPR036420 BRCT domain superfamily VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:2.20.70.80 392 432 1.6E-18 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 116 145 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Hamap MF_01588 DNA ligase [ligA]. 3 669 53.514 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:3.30.470.90 70 318 2.7E-101 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 SMART SM00292 595 669 4.3E-9 T 11-10-2018 IPR001357 BRCT domain VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 332 347 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Gene3D G3DSA:1.10.287.610 3 69 1.7E-26 T 11-10-2018 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 319 2.7E-132 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 PIRSF PIRSF001604 1 669 2.7E-252 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 VV93_v1c09080 bfcca4f69939e2d2e00fb741b48064f8 669 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 323 399 8.0E-36 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 230 7.4E-77 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 106 113 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 231 2.6E-80 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 230 43.896 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 Gene3D G3DSA:3.90.550.10 2 235 9.9E-78 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c25250 7bba8ec61468c4a03c71d7d02596cbb0 237 SUPERFAMILY SSF53448 8 231 2.71E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c10360 97cbd1f9082d3a74f5762d3209145dd9 435 Gene3D G3DSA:3.60.120.10 2 427 1.1E-127 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c10360 97cbd1f9082d3a74f5762d3209145dd9 435 SUPERFAMILY SSF56322 25 425 2.49E-103 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c10360 97cbd1f9082d3a74f5762d3209145dd9 435 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 427 31.892 T 11-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VV93_v1c10360 97cbd1f9082d3a74f5762d3209145dd9 435 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 85 424 9.4E-101 T 11-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VV93_v1c10360 97cbd1f9082d3a74f5762d3209145dd9 435 Pfam PF00425 chorismate binding enzyme 164 417 4.0E-71 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VV93_v1c42450 a77c1f5622fc85859c62fe6774a90c44 96 Gene3D G3DSA:3.40.50.2300 1 91 1.6E-21 T 11-10-2018 VV93_v1c42450 a77c1f5622fc85859c62fe6774a90c44 96 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 83 5.8E-14 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c42450 a77c1f5622fc85859c62fe6774a90c44 96 SUPERFAMILY SSF52794 1 86 2.17E-22 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:3.40.50.2300 704 839 1.1E-33 T 11-10-2018 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 692 1.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 673 1.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 635 1.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 PRINTS PR00344 Bacterial sensor protein C-terminal signature 639 649 1.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Pfam PF00072 Response regulator receiver domain 715 828 1.9E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SUPERFAMILY SSF52172 712 835 4.13E-32 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 582 694 2.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Pfam PF00512 His Kinase A (phospho-acceptor) domain 470 535 6.0E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SMART SM00387 582 695 7.1E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SMART SM00448 713 828 6.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SUPERFAMILY SSF47226 860 969 4.19E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:1.10.287.130 404 533 5.3E-25 T 11-10-2018 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SUPERFAMILY SSF47384 459 536 1.14E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:1.20.120.160 855 970 5.9E-21 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 TIGRFAM TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS 7 966 0.0 T 11-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Pfam PF01627 Hpt domain 883 955 1.2E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SMART SM00388 470 535 8.8E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SMART SM00073 873 969 1.2E-5 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:1.20.58.920 47 182 3.0E-45 T 11-10-2018 IPR038188 TorS, sensor domain superfamily VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:1.20.58.920 183 323 4.0E-52 T 11-10-2018 IPR038188 TorS, sensor domain superfamily VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 Gene3D G3DSA:3.30.565.10 534 697 4.0E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 SUPERFAMILY SSF55874 524 699 8.77E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36330 2aa599180d6480e66fa61c78e3b68aac 970 PIRSF PIRSF036437 1 970 0.0 T 11-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c32750 2855a594a8dac0d47c4af36372cd601c 307 SUPERFAMILY SSF103481 182 292 7.59E-8 T 11-10-2018 VV93_v1c32750 2855a594a8dac0d47c4af36372cd601c 307 SUPERFAMILY SSF103481 41 139 1.83E-13 T 11-10-2018 VV93_v1c32750 2855a594a8dac0d47c4af36372cd601c 307 Pfam PF00892 EamA-like transporter family 7 136 2.9E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32750 2855a594a8dac0d47c4af36372cd601c 307 Pfam PF00892 EamA-like transporter family 156 290 1.8E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 265 35.679 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 Gene3D G3DSA:3.30.360.10 127 234 3.0E-102 T 11-10-2018 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 Gene3D G3DSA:3.40.50.720 3 264 3.0E-102 T 11-10-2018 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 265 1.5E-99 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 6.1E-44 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 125 6.6E-41 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 SUPERFAMILY SSF55347 127 236 1.46E-37 T 11-10-2018 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 PIRSF PIRSF000161 1 268 3.7E-90 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c05660 0f943a3971d77de1d91f10ccbecb5d73 269 SUPERFAMILY SSF51735 1 268 2.68E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 Gene3D G3DSA:3.30.70.920 64 159 2.5E-24 T 11-10-2018 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 9.1E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 9.1E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 9.1E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 6.2E-22 T 11-10-2018 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 SUPERFAMILY SSF54909 74 158 8.98E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 Gene3D G3DSA:1.10.10.10 1 63 3.8E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.5E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 SMART SM00344 12 121 4.3E-55 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c12350 a4fc7a799e91ad484a7962701988234f 164 SUPERFAMILY SSF46785 12 70 2.17E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 Pfam PF07687 Peptidase dimerisation domain 175 273 6.9E-22 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 Gene3D G3DSA:3.30.70.360 177 286 3.8E-105 T 11-10-2018 VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 Pfam PF01546 Peptidase family M20/M25/M40 74 370 8.5E-25 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 SUPERFAMILY SSF55031 177 285 1.44E-23 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 PIRSF PIRSF037238 1 373 1.4E-147 T 11-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 Gene3D G3DSA:3.40.630.10 11 361 3.8E-105 T 11-10-2018 VV93_v1c42840 8fd89c704ed95022b862d635692a186a 374 SUPERFAMILY SSF53187 2 373 9.84E-39 T 11-10-2018 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Pfam PF13581 Histidine kinase-like ATPase domain 438 555 4.5E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Gene3D G3DSA:3.30.565.10 415 558 9.4E-6 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Gene3D G3DSA:3.60.40.10 166 384 1.6E-39 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 SUPERFAMILY SSF81606 180 376 2.01E-5 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Gene3D G3DSA:3.40.50.12740 1 165 3.9E-33 T 11-10-2018 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 SMART SM00448 1 115 5.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 SUPERFAMILY SSF52172 1 150 3.84E-31 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Pfam PF00072 Response regulator receiver domain 3 115 1.4E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 SMART SM00331 167 379 1.5E-17 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c45400 99676109dec2bce907de772a1e3224bc 558 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 192 379 1.0E-39 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c03080 4a1c2c2ba922c79c5223fca6e02eb87b 386 Gene3D G3DSA:3.40.50.2000 18 375 3.4E-37 T 11-10-2018 VV93_v1c03080 4a1c2c2ba922c79c5223fca6e02eb87b 386 Pfam PF00534 Glycosyl transferases group 1 197 361 1.1E-29 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c03080 4a1c2c2ba922c79c5223fca6e02eb87b 386 SUPERFAMILY SSF53756 1 377 4.55E-44 T 11-10-2018 VV93_v1c03080 4a1c2c2ba922c79c5223fca6e02eb87b 386 Gene3D G3DSA:3.40.50.2000 194 366 3.4E-37 T 11-10-2018 VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 Gene3D G3DSA:1.10.10.10 126 222 2.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 SMART SM00862 146 220 3.6E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 SUPERFAMILY SSF52172 1 166 1.11E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 Gene3D G3DSA:3.40.50.2300 1 124 3.4E-36 T 11-10-2018 VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 Pfam PF00072 Response regulator receiver domain 3 112 3.0E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 2.9E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c09860 f1b1df7298bec907dd4f1d05f58192a7 222 SMART SM00448 1 113 6.2E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 SUPERFAMILY SSF51261 145 392 1.1E-67 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 Gene3D G3DSA:3.10.450.350 161 265 2.3E-33 T 11-10-2018 VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 Pfam PF04225 Opacity-associated protein A LysM-like domain 74 156 6.6E-8 T 11-10-2018 IPR007340 Opacity-associated protein A VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 Gene3D G3DSA:2.70.70.10 266 397 2.2E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 Gene3D G3DSA:3.10.450.350 68 160 7.6E-32 T 11-10-2018 VV93_v1c34270 49d3b38ff7913536f04a6346420f10ae 429 Pfam PF01551 Peptidase family M23 296 390 1.1E-30 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 Pfam PF01228 Glycine radical 15 106 1.4E-22 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 ProSitePatterns PS00850 Glycine radical domain signature. 95 103 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 125 41.06 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 125 7.8E-69 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 PIRSF PIRSF000378 2 125 5.9E-54 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 SUPERFAMILY SSF51998 65 124 1.1E-23 T 11-10-2018 VV93_v1c05920 cf5fa6a009932b9a53602d9529847a13 125 Gene3D G3DSA:3.20.70.20 49 125 1.6E-25 T 11-10-2018 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 3.0E-30 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 Pfam PF00137 ATP synthase subunit C 10 72 2.6E-10 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 2.3E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 2.3E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 2.3E-6 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.438 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 SUPERFAMILY SSF81333 3 78 3.53E-19 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 Gene3D G3DSA:1.20.20.10 2 77 1.7E-27 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29780 f7543cd3f12c408657867d72e0c5ae46 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 Pfam PF00294 pfkB family carbohydrate kinase 1 294 7.7E-75 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 Hamap MF_01987 Ribokinase [rbsK]. 2 301 26.139 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 PRINTS PR00990 Ribokinase signature 217 228 3.2E-36 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 PRINTS PR00990 Ribokinase signature 173 188 3.2E-36 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 PRINTS PR00990 Ribokinase signature 6 27 3.2E-36 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 PRINTS PR00990 Ribokinase signature 33 52 3.2E-36 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 PRINTS PR00990 Ribokinase signature 105 118 3.2E-36 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 8.0E-111 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 SUPERFAMILY SSF53613 1 302 3.9E-85 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 Gene3D G3DSA:3.40.1190.20 1 301 3.2E-105 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c35750 fec0f95c97ea4c88f23f6490bb4cd4f3 306 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 4.5E-136 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 3.9E-68 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 SUPERFAMILY SSF53686 3 313 2.36E-96 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 Gene3D G3DSA:3.40.50.1100 43 145 1.1E-126 T 11-10-2018 VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 Gene3D G3DSA:3.40.50.1100 12 306 1.1E-126 T 11-10-2018 VV93_v1c09050 1270934fb842d2a3fdfddd6c1b9d292b 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 4.7E-143 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 VV93_v1c45060 6f1625d0a27ad100fffbdf422777348c 497 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 437 1.7E-95 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c45060 6f1625d0a27ad100fffbdf422777348c 497 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 488 3.2E-220 T 11-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 VV93_v1c45060 6f1625d0a27ad100fffbdf422777348c 497 Gene3D G3DSA:1.20.1730.10 12 494 5.9E-96 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c45060 6f1625d0a27ad100fffbdf422777348c 497 Pfam PF00474 Sodium:solute symporter family 36 437 9.5E-107 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 Gene3D G3DSA:3.40.50.620 9 177 2.1E-145 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 395 1.4E-136 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 Pfam PF00764 Arginosuccinate synthase 10 396 1.2E-145 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 Gene3D G3DSA:1.20.5.470 368 402 7.7E-8 T 11-10-2018 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 SUPERFAMILY SSF69864 177 402 4.58E-87 T 11-10-2018 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 402 51.975 T 11-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 Gene3D G3DSA:3.90.1260.10 68 356 2.1E-145 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 121 132 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c27280 e803661cf799baff01bb7d87a2c23027 403 SUPERFAMILY SSF52402 7 170 2.43E-47 T 11-10-2018 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 SUPERFAMILY SSF56784 15 239 1.57E-50 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 Gene3D G3DSA:1.10.150.240 44 107 1.9E-50 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 193 9.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 30 41 9.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 124 137 9.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 171 9.7E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 103 209 5.3E-16 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 Gene3D G3DSA:3.40.50.1000 32 212 1.9E-50 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c34280 3686d599808ff6ebf5411b2489303c6b 242 Pfam PF13419 Haloacid dehalogenase-like hydrolase 34 208 1.8E-32 T 11-10-2018 VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 SMART SM00116 84 131 6.1E-6 T 11-10-2018 IPR000644 CBS domain VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 SMART SM00116 11 59 5.9E-9 T 11-10-2018 IPR000644 CBS domain VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 Gene3D G3DSA:3.10.580.10 1 150 4.0E-53 T 11-10-2018 VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 Pfam PF00571 CBS domain 4 58 1.3E-13 T 11-10-2018 IPR000644 CBS domain VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 Pfam PF00571 CBS domain 79 127 9.8E-10 T 11-10-2018 IPR000644 CBS domain VV93_v1c06890 29663e566b35fc77d5ac55b69ea0bd2a 151 SUPERFAMILY SSF54631 1 132 1.77E-33 T 11-10-2018 VV93_v1c25880 299161419ea7dcafa0c3050a6f27149a 306 TIGRFAM TIGR03814 Gln_ase: glutaminase A 8 306 1.8E-129 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VV93_v1c25880 299161419ea7dcafa0c3050a6f27149a 306 Hamap MF_00313 Glutaminase [glsA]. 4 306 47.389 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VV93_v1c25880 299161419ea7dcafa0c3050a6f27149a 306 SUPERFAMILY SSF56601 3 306 7.92E-115 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c25880 299161419ea7dcafa0c3050a6f27149a 306 Gene3D G3DSA:3.40.710.10 1 306 1.7E-109 T 11-10-2018 VV93_v1c25880 299161419ea7dcafa0c3050a6f27149a 306 Pfam PF04960 Glutaminase 22 306 4.7E-112 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 VV93_v1c35160 b0c7de7529af359b08451ba2b863357e 312 Gene3D G3DSA:3.40.190.100 109 218 4.6E-97 T 11-10-2018 VV93_v1c35160 b0c7de7529af359b08451ba2b863357e 312 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 280 6.0E-63 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 VV93_v1c35160 b0c7de7529af359b08451ba2b863357e 312 Gene3D G3DSA:3.40.190.10 28 289 4.6E-97 T 11-10-2018 VV93_v1c35160 b0c7de7529af359b08451ba2b863357e 312 SUPERFAMILY SSF53850 20 295 2.12E-90 T 11-10-2018 VV93_v1c35160 b0c7de7529af359b08451ba2b863357e 312 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 19 306 1.6E-147 T 11-10-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 166 4.6E-26 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 SMART SM00852 4 171 1.9E-28 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 SUPERFAMILY SSF142433 251 385 8.63E-6 T 11-10-2018 IPR036653 CinA-like, C-terminal VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 411 102.054 T 11-10-2018 IPR008135 Competence-induced protein CinA VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 Gene3D G3DSA:3.40.980.10 1 171 8.7E-45 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 Pfam PF00994 Probable molybdopterin binding domain 4 169 1.2E-29 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 PIRSF PIRSF006728 1 391 1.3E-109 T 11-10-2018 IPR008135 Competence-induced protein CinA VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 2 353 3.8E-80 T 11-10-2018 IPR008135 Competence-induced protein CinA VV93_v1c11610 cf3ac182431df4806d970d6cce8be71f 411 SUPERFAMILY SSF53218 2 204 1.14E-33 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c08040 af56929e8f868c7031a22642affb9a2e 155 SUPERFAMILY SSF48013 7 153 1.7E-38 T 11-10-2018 IPR035926 NusB-like superfamily VV93_v1c08040 af56929e8f868c7031a22642affb9a2e 155 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 10 150 1.3E-42 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 VV93_v1c08040 af56929e8f868c7031a22642affb9a2e 155 Pfam PF01029 NusB family 11 149 2.7E-35 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VV93_v1c08040 af56929e8f868c7031a22642affb9a2e 155 Gene3D G3DSA:1.10.940.10 3 155 1.2E-47 T 11-10-2018 IPR035926 NusB-like superfamily VV93_v1c08040 af56929e8f868c7031a22642affb9a2e 155 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 8 153 22.977 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 VV93_v1c01880 9566908c94fe77aa5f22552ad1b93c35 313 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 20 296 23.94 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial VV93_v1c01880 9566908c94fe77aa5f22552ad1b93c35 313 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 21 279 2.8E-82 T 11-10-2018 IPR017039 Virulence factor BrkB VV93_v1c01880 9566908c94fe77aa5f22552ad1b93c35 313 Pfam PF03631 Virulence factor BrkB 32 280 7.5E-58 T 11-10-2018 IPR017039 Virulence factor BrkB VV93_v1c01880 9566908c94fe77aa5f22552ad1b93c35 313 PIRSF PIRSF035875 7 300 2.3E-55 T 11-10-2018 IPR017039 Virulence factor BrkB VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 Pfam PF00990 Diguanylate cyclase, GGDEF domain 370 522 6.6E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 SMART SM00267 358 526 2.1E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 SUPERFAMILY SSF55073 374 525 3.69E-36 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 366 525 6.0E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 Gene3D G3DSA:1.25.40.10 33 357 5.9E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 SUPERFAMILY SSF48452 38 245 2.75E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33370 d2622445b49703b037ccf0f2e52c4a10 527 Gene3D G3DSA:3.30.70.270 358 526 1.7E-42 T 11-10-2018 VV93_v1c19250 dfc2306f3416e797f8d5629204527d48 129 Pfam PF12680 SnoaL-like domain 7 102 5.6E-8 T 11-10-2018 IPR037401 SnoaL-like domain VV93_v1c19250 dfc2306f3416e797f8d5629204527d48 129 Gene3D G3DSA:3.10.450.50 1 128 2.3E-32 T 11-10-2018 VV93_v1c19250 dfc2306f3416e797f8d5629204527d48 129 SUPERFAMILY SSF54427 1 123 2.17E-31 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 Gene3D G3DSA:3.30.9.10 86 318 1.9E-79 T 11-10-2018 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 10 537 1.5E-267 T 11-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 Pfam PF01266 FAD dependent oxidoreductase 11 359 2.0E-51 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 Gene3D G3DSA:1.10.10.1100 418 489 2.7E-20 T 11-10-2018 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 SUPERFAMILY SSF51905 9 319 1.19E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 Pfam PF04324 BFD-like [2Fe-2S] binding domain 431 482 1.7E-10 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 Gene3D G3DSA:3.50.50.60 11 366 1.9E-79 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 9 21 2.9E-20 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 2.9E-20 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 311 317 2.9E-20 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 32 2.9E-20 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 2.9E-20 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c35260 eaf2412163090b9e262dca8319044c08 547 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c09810 2962952f5d112bd91cd37a52033e2787 93 Hamap MF_01866 Protein YcgL [ycgL]. 1 87 27.24 T 11-10-2018 IPR027354 YcgL domain VV93_v1c09810 2962952f5d112bd91cd37a52033e2787 93 SUPERFAMILY SSF160191 1 92 1.27E-37 T 11-10-2018 IPR038068 YcgL-like superfamily VV93_v1c09810 2962952f5d112bd91cd37a52033e2787 93 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 69 5.0E-35 T 11-10-2018 IPR027354 YcgL domain VV93_v1c09810 2962952f5d112bd91cd37a52033e2787 93 Gene3D G3DSA:3.10.510.20 1 73 9.7E-30 T 11-10-2018 IPR038068 YcgL-like superfamily VV93_v1c09810 2962952f5d112bd91cd37a52033e2787 93 Pfam PF05166 YcgL domain 3 74 1.8E-31 T 11-10-2018 IPR027354 YcgL domain VV93_v1c42070 f3121adf4f0e2fa6fdd4f2cd94ccb320 725 SUPERFAMILY SSF141868 474 717 2.48E-66 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c42070 f3121adf4f0e2fa6fdd4f2cd94ccb320 725 Gene3D G3DSA:3.20.20.450 459 716 1.6E-71 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c42070 f3121adf4f0e2fa6fdd4f2cd94ccb320 725 Pfam PF00563 EAL domain 475 709 2.8E-57 T 11-10-2018 IPR001633 EAL domain VV93_v1c42070 f3121adf4f0e2fa6fdd4f2cd94ccb320 725 SMART SM00052 466 714 3.5E-63 T 11-10-2018 IPR001633 EAL domain VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 SUPERFAMILY SSF109604 238 409 1.59E-32 T 11-10-2018 VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 SUPERFAMILY SSF109604 25 193 2.3E-14 T 11-10-2018 VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 SMART SM00471 244 379 1.5E-10 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 SMART SM00471 30 159 21.0 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 Pfam PF01966 HD domain 248 369 6.6E-18 T 11-10-2018 IPR006674 HD domain VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 Gene3D G3DSA:1.10.3210.10 230 420 3.0E-50 T 11-10-2018 VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 Gene3D G3DSA:1.10.3210.10 19 197 5.0E-19 T 11-10-2018 VV93_v1c18210 b29d847e73ec051ce2c310cbf7701aeb 422 TIGRFAM TIGR00277 HDIG: HDIG domain 248 338 3.0E-7 T 11-10-2018 IPR006675 HDIG domain VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Gene3D G3DSA:3.40.50.20 1 129 1.6E-52 T 11-10-2018 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 SUPERFAMILY SSF52440 2 122 6.91E-47 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 311 3.8E-140 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Gene3D G3DSA:3.30.1490.20 137 196 2.2E-29 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 1.6E-48 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 179.225 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 9.7E-80 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 Gene3D G3DSA:3.30.470.20 197 300 3.1E-40 T 11-10-2018 VV93_v1c25750 12ce290505dce7b97c37ee22056633e8 317 SUPERFAMILY SSF56059 123 313 1.7E-58 T 11-10-2018 VV93_v1c21290 333da875a6f927594f72de6b1ca3b89d 1954 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 1909 1949 5.1E-15 T 11-10-2018 IPR020011 Motility protein FimV, C-terminal VV93_v1c21290 333da875a6f927594f72de6b1ca3b89d 1954 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 71 142 1.4E-26 T 11-10-2018 IPR020012 Motility protein FimV, N-terminal VV93_v1c21290 333da875a6f927594f72de6b1ca3b89d 1954 Gene3D G3DSA:1.20.58.2200 1890 1951 4.8E-13 T 11-10-2018 IPR038440 FimV, C-terminal domain superfamily VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 Gene3D G3DSA:3.40.50.2300 156 263 8.5E-39 T 11-10-2018 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 167 256 3.4E-15 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 Gene3D G3DSA:3.40.930.10 1 147 1.8E-41 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 131 2.2E-42 T 11-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 SUPERFAMILY SSF55804 1 146 9.81E-39 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 147 1.7E-35 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 165 247 5.8E-29 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 276 618 1.9E-84 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 Pfam PF02378 Phosphotransferase system, EIIC 290 565 5.9E-16 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c31740 ae79a5e6c63a90a03fb5b8ec1e67ce86 633 SUPERFAMILY SSF52794 164 259 1.1E-33 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c31420 c80d656db48150e2fbe14f1041ec3145 427 Gene3D G3DSA:2.40.170.10 31 427 1.0E-66 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VV93_v1c31420 c80d656db48150e2fbe14f1041ec3145 427 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 62 408 0.0 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c31420 c80d656db48150e2fbe14f1041ec3145 427 Pfam PF02264 LamB porin 33 427 4.2E-84 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c31420 c80d656db48150e2fbe14f1041ec3145 427 SUPERFAMILY SSF56935 31 427 3.02E-87 T 11-10-2018 VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Pfam PF08463 EcoEI R protein C-terminal 607 768 6.5E-23 T 11-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Pfam PF04851 Type III restriction enzyme, res subunit 147 320 8.1E-36 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Gene3D G3DSA:3.40.50.300 337 544 2.0E-52 T 11-10-2018 VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 SUPERFAMILY SSF52540 163 518 3.08E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Pfam PF00271 Helicase conserved C-terminal domain 403 510 4.5E-6 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 44 113 4.8E-7 T 11-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Gene3D G3DSA:3.90.1570.30 1 128 2.6E-40 T 11-10-2018 VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 SMART SM00487 145 356 7.3E-16 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c29990 0d66923474375e4d7195262e2d0f709e 771 Gene3D G3DSA:3.40.50.300 130 336 2.4E-71 T 11-10-2018 VV93_v1c14080 a8337b53dc9b0a9c3b1d58c114145fa0 253 Gene3D G3DSA:3.40.190.10 31 236 2.6E-23 T 11-10-2018 VV93_v1c14080 a8337b53dc9b0a9c3b1d58c114145fa0 253 Gene3D G3DSA:3.40.190.10 111 207 2.6E-23 T 11-10-2018 VV93_v1c14080 a8337b53dc9b0a9c3b1d58c114145fa0 253 SUPERFAMILY SSF53850 26 236 3.91E-31 T 11-10-2018 VV93_v1c14080 a8337b53dc9b0a9c3b1d58c114145fa0 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 235 8.0E-20 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Pfam PF07085 DRTGG domain 233 344 1.3E-27 T 11-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 SUPERFAMILY SSF75138 229 353 4.58E-24 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Gene3D G3DSA:3.40.1390.20 225 365 2.3E-13 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Gene3D G3DSA:3.40.50.10950 398 709 6.6E-134 T 11-10-2018 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 7.7E-132 T 11-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 PIRSF PIRSF006107 1 714 0.0 T 11-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 SUPERFAMILY SSF52540 1 240 1.93E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Pfam PF13500 AAA domain 3 229 7.7E-50 T 11-10-2018 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Gene3D G3DSA:3.40.50.300 5 219 2.2E-12 T 11-10-2018 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 SUPERFAMILY SSF53659 392 709 3.08E-96 T 11-10-2018 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 6.9E-125 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 VV93_v1c18980 5e50bca2c2ad87947a01a0daf2011bc7 714 Gene3D G3DSA:3.40.50.10750 529 682 6.6E-134 T 11-10-2018 VV93_v1c30010 83f3bcdcd54e1f36318b34b69d793b5a 63 SUPERFAMILY SSF46955 10 62 2.87E-10 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c30010 83f3bcdcd54e1f36318b34b69d793b5a 63 Gene3D G3DSA:1.10.1660.10 6 62 1.2E-6 T 11-10-2018 VV93_v1c30010 83f3bcdcd54e1f36318b34b69d793b5a 63 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 10 60 6.1E-8 T 11-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 VV93_v1c30010 83f3bcdcd54e1f36318b34b69d793b5a 63 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 9 60 2.9E-11 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 SUPERFAMILY SSF50447 579 661 3.12E-24 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 1.3E-8 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 331 381 4.0E-15 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 SUPERFAMILY SSF50447 808 904 2.55E-34 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 410 565 8.8E-34 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Gene3D G3DSA:2.40.30.10 808 905 5.5E-34 T 11-10-2018 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 904 17.694 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Gene3D G3DSA:3.30.56.50 2 50 4.1E-24 T 11-10-2018 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Gene3D G3DSA:3.40.50.10050 701 807 5.5E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 324 906 1.1E-285 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Pfam PF00009 Elongation factor Tu GTP binding domain 410 567 7.5E-33 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Gene3D G3DSA:3.40.50.300 403 577 9.3E-71 T 11-10-2018 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 SUPERFAMILY SSF52156 684 813 1.83E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 SUPERFAMILY SSF52540 400 573 4.29E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 100 1.6E-15 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 ProSitePatterns PS01176 Initiation factor 2 signature. 857 879 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Pfam PF11987 Translation-initiation factor 2 691 796 9.7E-37 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 SUPERFAMILY SSF46955 3 50 1.43E-12 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c24250 06e6fb9f07f0441b51436bc7878862b3 907 Gene3D G3DSA:2.40.30.10 578 696 1.5E-40 T 11-10-2018 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 SMART SM00382 300 444 2.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Pfam PF02954 Bacterial regulatory protein, Fis family 555 580 1.1E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 SUPERFAMILY SSF46689 489 584 6.4E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Gene3D G3DSA:3.40.50.300 266 452 2.3E-55 T 11-10-2018 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 304 317 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Gene3D G3DSA:1.10.8.60 455 526 2.1E-10 T 11-10-2018 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 SUPERFAMILY SSF52540 284 510 3.0E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 367 382 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Pfam PF01590 GAF domain 91 185 8.5E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Pfam PF00158 Sigma-54 interaction domain 285 447 1.6E-60 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 565 585 5.6E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 548 565 5.6E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Gene3D G3DSA:1.10.10.60 541 582 5.0E-10 T 11-10-2018 VV93_v1c42530 d66429cda8599658258f5b7b5ec0bcc6 589 Gene3D G3DSA:3.30.450.40 4 188 3.0E-46 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c08500 a8f28e7b67ee3c60ec2022d939e72658 506 Gene3D G3DSA:3.60.110.10 207 481 7.2E-16 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c08500 a8f28e7b67ee3c60ec2022d939e72658 506 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 8 490 23.949 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VV93_v1c08500 a8f28e7b67ee3c60ec2022d939e72658 506 SUPERFAMILY SSF56317 214 486 2.35E-43 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c08500 a8f28e7b67ee3c60ec2022d939e72658 506 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 453 2.8E-98 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 VV93_v1c08500 a8f28e7b67ee3c60ec2022d939e72658 506 Pfam PF00795 Carbon-nitrogen hydrolase 221 470 2.2E-37 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 ProSitePatterns PS01229 Hypothetical cof family signature 2. 660 682 - T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 215 762 4.3E-170 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Gene3D G3DSA:3.40.1110.10 477 594 4.1E-80 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00941 Cadmium-transporting ATPase signature 85 106 3.5E-6 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00941 Cadmium-transporting ATPase signature 250 270 3.5E-6 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00941 Cadmium-transporting ATPase signature 350 364 3.5E-6 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 238 739 7.1E-82 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 ProSitePatterns PS01047 Heavy-metal-associated domain. 76 105 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Gene3D G3DSA:3.40.50.1000 447 712 4.1E-80 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 SUPERFAMILY SSF56784 465 760 1.13E-50 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Pfam PF00403 Heavy-metal-associated domain 76 126 7.1E-10 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 683 695 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 466 480 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 619 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 679 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 587 598 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 315 329 9.7E-28 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Gene3D G3DSA:2.70.150.20 265 370 5.6E-29 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 SUPERFAMILY SSF81665 218 748 9.68E-19 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 468 474 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Gene3D G3DSA:3.30.70.100 70 135 1.9E-12 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Pfam PF00702 haloacid dehalogenase-like hydrolase 463 673 2.2E-38 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 Pfam PF00122 E1-E2 ATPase 267 446 2.8E-47 T 11-10-2018 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 SUPERFAMILY SSF81653 271 365 1.57E-20 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VV93_v1c20860 5d7f656b942c45f31aee99db34b09a5c 770 SUPERFAMILY SSF55008 73 138 2.88E-13 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Gene3D G3DSA:3.10.50.40 278 380 4.6E-73 T 11-10-2018 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Pfam PF13616 PPIC-type PPIASE domain 163 269 8.3E-21 T 11-10-2018 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 SUPERFAMILY SSF109998 24 197 1.02E-37 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Gene3D G3DSA:1.10.4030.10 20 147 1.9E-34 T 11-10-2018 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Pfam PF00639 PPIC-type PPIASE domain 284 375 1.7E-21 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Gene3D G3DSA:3.10.50.40 174 381 4.6E-73 T 11-10-2018 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Pfam PF09312 SurA N-terminal domain 24 141 5.1E-44 T 11-10-2018 IPR015391 SurA N-terminal VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 Hamap MF_01183 Chaperone SurA [surA]. 8 423 32.326 T 11-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 SUPERFAMILY SSF54534 278 380 5.89E-29 T 11-10-2018 VV93_v1c04470 c00b35f3ed6c4ce0c5eed5a49bd84528 428 SUPERFAMILY SSF54534 172 270 9.81E-25 T 11-10-2018 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 302 1.1E-170 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 294 61.709 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 SUPERFAMILY SSF55681 8 293 1.88E-132 T 11-10-2018 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 2.7E-70 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 293 3.1E-149 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 Gene3D G3DSA:3.30.930.10 1 215 4.5E-110 T 11-10-2018 VV93_v1c00100 e54b52217855bf0942705c1e3b3cdebf 305 Gene3D G3DSA:1.20.58.180 216 298 1.6E-34 T 11-10-2018 VV93_v1c35610 7cc17dbc34941f893a125d2a1cc1a5b7 510 Pfam PF03606 C4-dicarboxylate anaerobic carrier 20 505 1.6E-135 T 11-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SMART SM00267 418 582 1.6E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Pfam PF02743 Cache domain 43 318 3.5E-19 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SUPERFAMILY SSF158472 371 420 3.14E-8 T 11-10-2018 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Gene3D G3DSA:3.30.450.20 153 221 4.0E-19 T 11-10-2018 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Pfam PF00563 EAL domain 599 834 8.0E-72 T 11-10-2018 IPR001633 EAL domain VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Gene3D G3DSA:3.20.20.450 595 843 6.3E-89 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SUPERFAMILY SSF55073 434 575 4.32E-29 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Gene3D G3DSA:3.30.450.20 222 338 4.0E-19 T 11-10-2018 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Pfam PF00990 Diguanylate cyclase, GGDEF domain 431 575 2.1E-27 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Gene3D G3DSA:1.10.8.500 370 422 3.4E-7 T 11-10-2018 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SMART SM00304 370 423 1.5E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SUPERFAMILY SSF141868 600 841 1.83E-80 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 426 575 1.4E-21 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 Gene3D G3DSA:3.30.70.270 424 594 6.1E-33 T 11-10-2018 VV93_v1c01800 aefac896d0239228e78c16e5a1200122 843 SMART SM00052 592 839 4.9E-98 T 11-10-2018 IPR001633 EAL domain VV93_v1c28450 6b5eb49ef223c26e7da3ca64bf90f315 88 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 11 87 3.7E-35 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted VV93_v1c28450 6b5eb49ef223c26e7da3ca64bf90f315 88 Pfam PF13937 Domain of unknown function (DUF4212) 9 85 1.4E-34 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 Gene3D G3DSA:1.10.10.10 1 83 9.4E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 SUPERFAMILY SSF46785 1 75 7.77E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 SUPERFAMILY SSF53850 85 293 2.71E-40 T 11-10-2018 VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 Gene3D G3DSA:3.40.190.10 168 266 6.7E-50 T 11-10-2018 VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 59 1.9E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 Gene3D G3DSA:3.40.190.10 85 289 6.7E-50 T 11-10-2018 VV93_v1c44270 366ba6f812d7653fc1599fac6cfb74ab 299 Pfam PF03466 LysR substrate binding domain 91 294 1.1E-20 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 Pfam PF02954 Bacterial regulatory protein, Fis family 305 333 1.7E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 SUPERFAMILY SSF52540 4 237 1.65E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 Pfam PF00158 Sigma-54 interaction domain 5 168 8.4E-58 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 SUPERFAMILY SSF46689 285 341 3.58E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 5 339 8.5E-167 T 11-10-2018 IPR014317 Transcription activator PspF VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 91 106 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 Gene3D G3DSA:3.40.50.300 1 176 1.8E-57 T 11-10-2018 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 219 228 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 PRINTS PR00819 CbxX/CfqX superfamily signature 1 7 8.5E-5 T 11-10-2018 IPR000641 CbxX/CfqX GO:0005524 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 PRINTS PR00819 CbxX/CfqX superfamily signature 88 107 8.5E-5 T 11-10-2018 IPR000641 CbxX/CfqX GO:0005524 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 PRINTS PR00819 CbxX/CfqX superfamily signature 222 234 8.5E-5 T 11-10-2018 IPR000641 CbxX/CfqX GO:0005524 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 Gene3D G3DSA:1.10.8.60 177 262 2.3E-25 T 11-10-2018 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 SMART SM00382 25 177 8.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 Gene3D G3DSA:1.10.10.60 271 342 1.2E-5 T 11-10-2018 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 322 342 5.3E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c13020 bd5f206e32d4f350ea25be46af70a59d 345 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 305 322 5.3E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c24600 b12aceee6f8ec91b93babe74612682d5 409 SUPERFAMILY SSF111352 12 383 1.83E-105 T 11-10-2018 VV93_v1c24600 b12aceee6f8ec91b93babe74612682d5 409 Pfam PF00909 Ammonium Transporter Family 18 402 4.7E-101 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 VV93_v1c24600 b12aceee6f8ec91b93babe74612682d5 409 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 12 405 5.2E-205 T 11-10-2018 IPR019879 Ammonium transporter, marine subtype VV93_v1c24600 b12aceee6f8ec91b93babe74612682d5 409 ProSitePatterns PS01219 Ammonium transporters signature. 163 188 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 VV93_v1c24600 b12aceee6f8ec91b93babe74612682d5 409 Gene3D G3DSA:1.10.3430.10 2 408 2.0E-118 T 11-10-2018 IPR029020 Ammonium/urea transporter VV93_v1c42370 b8e501e08c196e54fd98a40dfa98db4a 191 Gene3D G3DSA:2.60.40.420 73 191 2.3E-18 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c42370 b8e501e08c196e54fd98a40dfa98db4a 191 SUPERFAMILY SSF49503 82 189 8.26E-23 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c25170 fbee32162a4ff48f2b4224739e18af43 167 SUPERFAMILY SSF142433 3 160 4.18E-55 T 11-10-2018 IPR036653 CinA-like, C-terminal VV93_v1c25170 fbee32162a4ff48f2b4224739e18af43 167 Pfam PF02464 Competence-damaged protein 6 158 3.4E-56 T 11-10-2018 IPR008136 CinA, C-terminal VV93_v1c25170 fbee32162a4ff48f2b4224739e18af43 167 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 11 156 5.1E-48 T 11-10-2018 IPR008136 CinA, C-terminal VV93_v1c25170 fbee32162a4ff48f2b4224739e18af43 167 Gene3D G3DSA:3.90.950.20 1 162 6.4E-56 T 11-10-2018 IPR036653 CinA-like, C-terminal VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Gene3D G3DSA:3.30.360.80 714 786 2.1E-30 T 11-10-2018 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 SMART SM00490 519 603 2.7E-17 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Gene3D G3DSA:2.30.30.140 1 53 1.6E-23 T 11-10-2018 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 SUPERFAMILY SSF52540 273 651 2.66E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Pfam PF12137 RNA polymerase recycling family C-terminal 607 966 4.9E-150 T 11-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 SUPERFAMILY SSF52540 118 378 2.4E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Pfam PF00271 Helicase conserved C-terminal domain 494 603 1.8E-15 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Gene3D G3DSA:3.40.50.10810 150 430 2.2E-102 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Gene3D G3DSA:3.40.50.300 431 635 2.4E-47 T 11-10-2018 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 SMART SM00487 150 346 1.1E-12 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 967 29.229 T 11-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Pfam PF00176 SNF2 family N-terminal domain 174 342 2.5E-14 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 VV93_v1c26480 2d97b38caebd90b480d6551031a51bae 969 Gene3D G3DSA:2.30.30.930 55 114 4.2E-28 T 11-10-2018 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 SMART SM00382 36 219 9.4E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 Pfam PF08402 TOBE domain 286 365 1.3E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 Gene3D G3DSA:2.40.50.140 293 314 6.3E-11 T 11-10-2018 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 SUPERFAMILY SSF50331 245 365 3.8E-8 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 Gene3D G3DSA:2.40.50.940 230 292 6.3E-11 T 11-10-2018 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 Gene3D G3DSA:3.40.50.300 11 229 5.7E-69 T 11-10-2018 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 SUPERFAMILY SSF52540 12 249 3.59E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 Pfam PF00005 ABC transporter 29 168 3.7E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c15750 8cd86137eb2e9df26caf240026c9fe59 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 42 365 6.2E-156 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 SUPERFAMILY SSF49493 115 263 1.83E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Gene3D G3DSA:2.10.230.10 141 211 3.3E-25 T 11-10-2018 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Pfam PF01556 DnaJ C terminal domain 123 335 4.9E-45 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 3.3E-141 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Gene3D G3DSA:1.10.287.110 1 115 2.5E-36 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Gene3D G3DSA:2.60.260.20 257 365 6.5E-29 T 11-10-2018 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 375 42.93 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Pfam PF00684 DnaJ central domain 149 209 6.4E-15 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 SUPERFAMILY SSF49493 261 346 6.28E-23 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 SUPERFAMILY SSF57938 136 212 4.05E-23 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 SMART SM00271 4 62 1.7E-31 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 SUPERFAMILY SSF46565 1 110 3.79E-36 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 PRINTS PR00625 DnaJ domain signature 25 40 1.8E-32 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 PRINTS PR00625 DnaJ domain signature 42 62 1.8E-32 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 PRINTS PR00625 DnaJ domain signature 62 81 1.8E-32 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 PRINTS PR00625 DnaJ domain signature 7 25 1.8E-32 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 Pfam PF00226 DnaJ domain 5 67 2.5E-27 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07740 f22db398e269900baa066e335ee4ff4f 381 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 Pfam PF06969 HemN C-terminal domain 314 374 3.2E-6 T 11-10-2018 IPR010723 HemN, C-terminal VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 Pfam PF04055 Radical SAM superfamily 11 181 3.0E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 SUPERFAMILY SSF102114 4 386 1.96E-109 T 11-10-2018 VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 378 2.0E-135 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 Gene3D G3DSA:3.80.30.20 2 306 1.6E-96 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c25860 8a659b7eca7e9d2000eebaacf71e6fdb 389 SMART SM00729 6 227 8.1E-56 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:3.30.56.10 7 179 4.6E-69 T 11-10-2018 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Pfam PF03483 B3/4 domain 212 385 3.9E-71 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SUPERFAMILY SSF55681 467 689 2.44E-54 T 11-10-2018 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SMART SM00896 701 794 4.0E-45 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Pfam PF01588 Putative tRNA binding domain 45 145 1.0E-25 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SUPERFAMILY SSF50249 38 197 3.92E-46 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 7.2E-278 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:3.30.930.10 485 691 3.6E-63 T 11-10-2018 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SUPERFAMILY SSF54991 697 794 5.62E-30 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:3.30.56.10 401 475 2.2E-25 T 11-10-2018 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SMART SM00874 403 471 2.0E-28 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:3.50.40.10 197 395 1.6E-82 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.1E-28 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.424 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SUPERFAMILY SSF46955 403 475 1.37E-19 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:2.40.50.140 39 154 4.6E-69 T 11-10-2018 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Gene3D G3DSA:3.30.70.380 702 795 9.2E-30 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SMART SM00873 212 385 1.6E-100 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 2.5E-17 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VV93_v1c17320 271df5fcfc3e041ab9b71ce2ed0b80a3 795 SUPERFAMILY SSF56037 195 394 2.38E-77 T 11-10-2018 VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 SUPERFAMILY SSF52540 353 512 8.04E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 Pfam PF00005 ABC transporter 22 169 3.4E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 SUPERFAMILY SSF52540 3 234 1.03E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 ProSitePatterns PS00211 ABC transporters family signature. 451 465 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 Gene3D G3DSA:3.40.50.300 2 270 2.0E-45 T 11-10-2018 VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 SMART SM00382 28 213 4.2E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 SMART SM00382 360 522 6.8E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 Gene3D G3DSA:3.40.50.300 293 520 2.9E-34 T 11-10-2018 VV93_v1c42400 01fc2f45579f8c3e685d1a792d835e71 522 Pfam PF00005 ABC transporter 353 480 1.2E-16 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 102 116 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 Gene3D G3DSA:3.10.290.10 1 61 8.1E-23 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 Pfam PF00849 RNA pseudouridylate synthase 67 193 5.2E-14 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 224 1.4E-47 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 SUPERFAMILY SSF55174 8 61 1.18E-14 T 11-10-2018 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 Gene3D G3DSA:3.30.70.580 68 227 3.4E-54 T 11-10-2018 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 Gene3D G3DSA:3.30.70.1560 132 205 3.4E-54 T 11-10-2018 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 Pfam PF01479 S4 domain 8 52 7.6E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 SMART SM00363 7 65 2.6E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c08690 7d3597cefa7e42b470340c37b6bb8107 347 SUPERFAMILY SSF55120 66 227 1.04E-38 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c34450 5ff22a74366ae19f69a9e0078dc9c2e9 182 Pfam PF12464 Maltose acetyltransferase 6 55 4.3E-9 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c34450 5ff22a74366ae19f69a9e0078dc9c2e9 182 SMART SM01266 4 56 6.3E-15 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c34450 5ff22a74366ae19f69a9e0078dc9c2e9 182 SUPERFAMILY SSF51161 2 181 7.07E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c34450 5ff22a74366ae19f69a9e0078dc9c2e9 182 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 127 161 3.4E-8 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c34450 5ff22a74366ae19f69a9e0078dc9c2e9 182 Gene3D G3DSA:2.160.10.10 1 182 1.5E-63 T 11-10-2018 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 SMART SM00342 190 272 9.6E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 Pfam PF02311 AraC-like ligand binding domain 18 150 1.1E-25 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 227 268 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 SUPERFAMILY SSF46689 227 274 2.15E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 Gene3D G3DSA:1.10.10.60 233 276 1.4E-16 T 11-10-2018 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 SUPERFAMILY SSF51215 31 156 1.7E-17 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 Pfam PF12833 Helix-turn-helix domain 196 273 1.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 SUPERFAMILY SSF46689 174 224 1.79E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 1.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 1.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c40590 c61937dfef5cc3091a217db1f3016592 276 Gene3D G3DSA:1.10.10.60 173 232 1.6E-14 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 7.3E-247 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 SUPERFAMILY SSF51621 249 549 4.45E-110 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Gene3D G3DSA:1.10.274.10 21 146 2.1E-80 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 1.2E-31 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Gene3D G3DSA:3.50.30.10 4 233 2.1E-80 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 SUPERFAMILY SSF52009 125 243 9.29E-35 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 SUPERFAMILY SSF47831 24 143 1.1E-32 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 PIRSF PIRSF000732 1 574 1.9E-219 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 541 5.4E-124 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 2.6E-30 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 2.6E-30 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 2.6E-30 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 2.6E-30 T 11-10-2018 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 1.5E-20 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VV93_v1c09030 a6d3e053ef91435a421ab798b30efe5b 574 Gene3D G3DSA:3.20.20.60 234 574 1.6E-125 T 11-10-2018 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 Gene3D G3DSA:1.20.210.10 25 543 2.1E-219 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 47 489 2.1E-151 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 267 321 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 SUPERFAMILY SSF81442 36 542 6.02E-194 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 38 63 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 311 326 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 448 469 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 112 136 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 265 286 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 155 167 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 370 388 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 398 417 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 214 233 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 85 108 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 335 356 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 185 203 8.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40540 6e708fb0c14fd9ffac8ec4a30a3149b1 543 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 39 542 8.5E-214 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 PIRSF PIRSF000728 2 262 4.8E-70 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 TIGRFAM TIGR00761 argB: acetylglutamate kinase 9 235 2.1E-64 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 Hamap MF_00082 Acetylglutamate kinase [argB]. 6 255 42.794 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 Pfam PF00696 Amino acid kinase family 9 231 1.6E-36 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 SUPERFAMILY SSF53633 8 262 4.19E-59 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c27290 fe9e6791bdc55a6e9f8a4ed056232fcf 263 Gene3D G3DSA:3.40.1160.10 5 260 7.7E-67 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 SUPERFAMILY SSF48600 5 97 2.44E-26 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 Pfam PF01817 Chorismate mutase type II 17 93 9.0E-17 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 SMART SM00830 17 96 8.7E-25 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 PIRSF PIRSF029775 1 104 1.8E-43 T 11-10-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 TIGRFAM TIGR01803 CM-like: chorismate mutase related enzymes 13 93 4.7E-26 T 11-10-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c42240 a15bee330da47be60f2cf56e4635611b 109 Gene3D G3DSA:1.20.59.10 4 104 1.5E-36 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c36420 1e9b6b15bfb14f98b791b05bfc4b32f5 660 TIGRFAM TIGR03509 OMP_MtrB_PioB: decaheme-associated outer membrane protein, MtrB/PioB family 49 657 9.5E-159 T 11-10-2018 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB VV93_v1c36420 1e9b6b15bfb14f98b791b05bfc4b32f5 660 SUPERFAMILY SSF56935 126 435 9.52E-7 T 11-10-2018 VV93_v1c36420 1e9b6b15bfb14f98b791b05bfc4b32f5 660 SUPERFAMILY SSF56935 424 656 1.28E-5 T 11-10-2018 VV93_v1c36420 1e9b6b15bfb14f98b791b05bfc4b32f5 660 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 57 659 4.9E-165 T 11-10-2018 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 Gene3D G3DSA:1.10.3860.10 2 418 5.2E-117 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 228 247 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 1.1E-52 T 11-10-2018 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 Pfam PF00375 Sodium:dicarboxylate symporter family 13 401 2.4E-118 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VV93_v1c11330 84bd488ba4e9de98fbd837f8ffdc96b6 418 SUPERFAMILY SSF118215 13 401 1.26E-109 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 Gene3D G3DSA:3.20.20.70 1 206 9.0E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 Pfam PF01081 KDPG and KHG aldolase 6 197 1.2E-70 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 SUPERFAMILY SSF51569 3 205 6.96E-66 T 11-10-2018 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 204 3.9E-82 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c42960 1dc726c2809c4da3e9c39e1c28a8b13c 207 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 Pfam PF08497 Radical SAM N-terminal 24 370 1.8E-143 T 11-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 371 391 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 24 638 49.169 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 SMART SM00729 367 617 9.5E-5 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 24 636 9.4E-263 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 Pfam PF04055 Radical SAM superfamily 371 576 3.9E-20 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 Gene3D G3DSA:3.80.30.20 367 624 4.5E-13 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 Pfam PF11842 Domain of unknown function (DUF3362) 585 728 1.9E-42 T 11-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal VV93_v1c19050 70087d7fbb3e3a880e6ca5a889a17c0a 768 SUPERFAMILY SSF102114 370 605 2.22E-11 T 11-10-2018 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 Pfam PF06445 GyrI-like small molecule binding domain 154 294 2.0E-27 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 Gene3D G3DSA:1.10.10.60 59 114 5.8E-15 T 11-10-2018 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 SUPERFAMILY SSF46689 8 59 3.27E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 SMART SM00871 152 301 3.0E-19 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 SMART SM00342 25 108 1.8E-33 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 SUPERFAMILY SSF46689 61 109 9.32E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 SUPERFAMILY SSF55136 155 300 1.06E-28 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 Pfam PF12833 Helix-turn-helix domain 32 109 5.8E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 Gene3D G3DSA:3.20.80.10 153 302 2.6E-34 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 62 104 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 Gene3D G3DSA:1.10.10.60 3 58 5.9E-17 T 11-10-2018 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 92 108 1.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c41760 bca032364b52f3e8248cbe3fc4f112ed 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 77 92 1.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c36600 a53a468c9a901d9e3f9ef634c425e300 521 SUPERFAMILY SSF53649 23 470 3.34E-121 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c36600 a53a468c9a901d9e3f9ef634c425e300 521 Pfam PF00884 Sulfatase 27 353 2.0E-65 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c36600 a53a468c9a901d9e3f9ef634c425e300 521 Gene3D G3DSA:3.40.720.10 24 428 1.2E-98 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00097 Anthranilate synthase component II signature 54 63 2.1E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00097 Anthranilate synthase component II signature 81 92 2.1E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00097 Anthranilate synthase component II signature 169 182 2.1E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 197 6.8E-85 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 SUPERFAMILY SSF54810 397 517 4.71E-51 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Pfam PF00117 Glutamine amidotransferase class-I 12 191 1.8E-42 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 205 517 2.4E-156 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 SUPERFAMILY SSF52402 189 412 3.75E-58 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Gene3D G3DSA:3.40.50.880 6 201 4.4E-55 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 SUPERFAMILY SSF52317 8 229 3.97E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 4.0E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 4.0E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 4.0E-6 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Pfam PF00958 GMP synthase C terminal domain 425 516 1.3E-43 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 517 56.658 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Gene3D G3DSA:3.30.300.10 398 517 6.7E-51 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.4E-7 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.4E-7 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.4E-7 T 11-10-2018 VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Gene3D G3DSA:3.40.50.620 202 397 1.9E-75 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c07220 7a23e14b40a9a5368f6f6717d9f9c74d 517 Pfam PF02540 NAD synthase 212 285 1.1E-7 T 11-10-2018 IPR022310 NAD/GMP synthase VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 SUPERFAMILY SSF51338 4 55 5.44E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 PIRSF PIRSF038994 3 378 1.0E-90 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 SUPERFAMILY SSF51556 56 345 3.4E-83 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 4 373 8.6E-85 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 Pfam PF01979 Amidohydrolase family 52 371 1.5E-11 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 Gene3D G3DSA:3.20.20.140 57 342 6.8E-101 T 11-10-2018 VV93_v1c41320 7ce4fc1d30a8a005188ad905026e551a 378 Gene3D G3DSA:2.30.40.10 10 373 6.8E-101 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c39460 45378275428d680a1dfcba19ac301c24 74 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 4 69 3.8E-29 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VV93_v1c39460 45378275428d680a1dfcba19ac301c24 74 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 15 69 2.0E-25 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor VV93_v1c03320 0ed32a44c3a01bc9fb5b12a0814b300b 375 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 362 2.5E-75 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 VV93_v1c03320 0ed32a44c3a01bc9fb5b12a0814b300b 375 Gene3D G3DSA:3.40.50.2000 6 187 2.2E-106 T 11-10-2018 VV93_v1c03320 0ed32a44c3a01bc9fb5b12a0814b300b 375 Gene3D G3DSA:3.40.50.2000 188 328 2.2E-106 T 11-10-2018 VV93_v1c03320 0ed32a44c3a01bc9fb5b12a0814b300b 375 SUPERFAMILY SSF53756 3 373 3.77E-112 T 11-10-2018 VV93_v1c03320 0ed32a44c3a01bc9fb5b12a0814b300b 375 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 29 361 1.0E-90 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c18260 ff6ade3ed80431617221fc1bea7b25a7 519 Pfam PF11230 Protein of unknown function (DUF3029) 21 502 5.9E-227 T 11-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VV93_v1c18260 ff6ade3ed80431617221fc1bea7b25a7 519 PIRSF PIRSF028991 5 514 7.5E-288 T 11-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VV93_v1c18260 ff6ade3ed80431617221fc1bea7b25a7 519 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 10 502 1.5E-240 T 11-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted VV93_v1c18260 ff6ade3ed80431617221fc1bea7b25a7 519 SUPERFAMILY SSF51998 24 468 7.32E-89 T 11-10-2018 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Pfam PF00501 AMP-binding enzyme 84 523 1.7E-94 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 646 52.972 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 SUPERFAMILY SSF56801 10 644 4.45E-184 T 11-10-2018 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Pfam PF13193 AMP-binding enzyme C-terminal domain 532 610 2.0E-26 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Gene3D G3DSA:3.30.300.30 519 650 1.3E-31 T 11-10-2018 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Gene3D G3DSA:3.40.50.12780 50 516 2.5E-105 T 11-10-2018 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 644 0.0 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 VV93_v1c28510 d328504f450c6154afc396a81be55a7e 650 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 2.5E-20 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:2.40.50.100 79 213 1.7E-6 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:2.40.50.100 299 335 2.2E-14 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:1.10.287.470 113 191 1.7E-6 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:1.10.287.470 230 298 2.2E-14 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 48 71 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 432 452 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 374 397 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 417 432 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 90 110 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 350 374 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 317 338 1.1E-55 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 37 453 1.3E-134 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:2.40.30.170 66 78 1.7E-6 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Gene3D G3DSA:2.40.30.170 336 429 2.2E-14 T 11-10-2018 VV93_v1c39770 d09947b74976bbb53f8b6d5fd4ff479d 453 Pfam PF13437 HlyD family secretion protein 305 420 5.1E-19 T 11-10-2018 VV93_v1c21130 1390b412d193be117aa957cb9cf0deee 2424 Pfam PF05593 RHS Repeat 1350 1381 3.8E-5 T 11-10-2018 IPR031325 RHS repeat VV93_v1c21130 1390b412d193be117aa957cb9cf0deee 2424 Gene3D G3DSA:2.180.10.10 1661 2111 4.7E-35 T 11-10-2018 VV93_v1c21130 1390b412d193be117aa957cb9cf0deee 2424 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 2023 2112 4.1E-17 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VV93_v1c21130 1390b412d193be117aa957cb9cf0deee 2424 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1350 1381 2.3E-5 T 11-10-2018 IPR006530 YD repeat VV93_v1c21130 1390b412d193be117aa957cb9cf0deee 2424 SUPERFAMILY SSF69318 296 639 1.31E-8 T 11-10-2018 VV93_v1c12470 1c29d00bd65fda9a2f9dd4e71fe20722 139 SUPERFAMILY SSF54427 8 125 8.07E-23 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c12470 1c29d00bd65fda9a2f9dd4e71fe20722 139 Gene3D G3DSA:3.10.450.50 6 124 2.6E-23 T 11-10-2018 VV93_v1c12470 1c29d00bd65fda9a2f9dd4e71fe20722 139 Pfam PF12680 SnoaL-like domain 8 108 1.4E-13 T 11-10-2018 IPR037401 SnoaL-like domain VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 SUPERFAMILY SSF55804 129 250 1.31E-18 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 SUPERFAMILY SSF55594 9 89 2.22E-12 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 Gene3D G3DSA:3.30.1340.10 2 90 1.2E-6 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 Pfam PF00381 PTS HPr component phosphorylation site 12 85 2.1E-4 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 Gene3D G3DSA:3.40.930.10 106 252 5.0E-17 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 129 252 1.7E-21 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c31760 3efc0d058f6e36044342a0f4d968fb77 259 PIRSF PIRSF029195 1 259 1.0E-178 T 11-10-2018 IPR016910 Uncharacterised conserved protein UCP029195, PTS-EIIA 2 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 262 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 Gene3D G3DSA:1.10.10.60 163 272 9.6E-25 T 11-10-2018 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 Pfam PF12852 Cupin 2 153 5.1E-21 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 Pfam PF12833 Helix-turn-helix domain 190 266 1.7E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 SUPERFAMILY SSF51215 31 150 3.4E-7 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 SUPERFAMILY SSF46689 220 265 5.82E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 SMART SM00342 184 266 8.0E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c19090 240578cf8980ab78c603e0909d9e63c6 279 SUPERFAMILY SSF46689 167 218 1.75E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c01860 eab559bed466147fef573ffb99126a64 173 Pfam PF13521 AAA domain 4 164 8.5E-41 T 11-10-2018 IPR038727 NadR/Ttd14, AAA domain VV93_v1c01860 eab559bed466147fef573ffb99126a64 173 Gene3D G3DSA:3.40.50.300 3 168 1.4E-9 T 11-10-2018 VV93_v1c01860 eab559bed466147fef573ffb99126a64 173 SUPERFAMILY SSF52540 4 171 6.71E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 SUPERFAMILY SSF47203 301 453 1.24E-20 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Pfam PF09317 Domain of unknown function (DUF1974) 455 739 4.2E-110 T 11-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 SUPERFAMILY SSF56645 65 296 1.1E-45 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Gene3D G3DSA:2.40.110.10 177 300 2.6E-90 T 11-10-2018 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 301 447 4.1E-9 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 178 277 1.6E-9 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Gene3D G3DSA:1.10.540.10 64 176 2.6E-90 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 67 173 5.9E-15 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VV93_v1c13480 3b6bc394e701fc12a2547164d5f2892d 761 Gene3D G3DSA:1.20.140.10 301 446 2.6E-90 T 11-10-2018 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 Gene3D G3DSA:3.90.110.10 171 437 3.5E-94 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 142 172 - T 11-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 412 1.3E-51 T 11-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 Gene3D G3DSA:3.40.50.720 1 170 3.3E-64 T 11-10-2018 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 SUPERFAMILY SSF56327 173 436 3.54E-85 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 SUPERFAMILY SSF51735 3 170 1.01E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 99 112 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 78 94 1.7E-41 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c44460 c41e0240fe568afb4cd4d4f3da456797 437 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 4.1E-58 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 SUPERFAMILY SSF46785 10 86 6.48E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 2.1E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 SUPERFAMILY SSF53383 97 475 2.02E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 Gene3D G3DSA:3.90.1150.10 116 473 7.1E-77 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 Gene3D G3DSA:3.40.640.10 145 361 7.1E-77 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 Gene3D G3DSA:1.10.10.10 9 76 2.3E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 Pfam PF00155 Aminotransferase class I and II 146 458 9.3E-24 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c32250 b7383240cacb14ae5369b771613d9d56 477 SMART SM00345 16 75 5.8E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 418 503 1.5E-13 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:2.60.40.1130 290 407 9.6E-14 T 11-10-2018 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF51011 1095 1203 1.08E-27 T 11-10-2018 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:2.60.40.10 409 517 1.3E-27 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Pfam PF11852 Domain of unknown function (DUF3372) 1030 1201 9.3E-51 T 11-10-2018 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:3.20.20.80 518 1126 7.6E-202 T 11-10-2018 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:2.60.40.1110 28 161 8.8E-26 T 11-10-2018 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:2.60.40.1110 166 277 2.0E-27 T 11-10-2018 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF49452 168 278 9.16E-32 T 11-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF81296 418 521 1.63E-21 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF51445 515 1093 1.89E-130 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Pfam PF03714 Bacterial pullanase-associated domain 48 161 5.3E-12 T 11-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Pfam PF03714 Bacterial pullanase-associated domain 174 278 4.1E-12 T 11-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF81296 284 408 5.88E-20 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 Gene3D G3DSA:2.60.40.1180 1127 1203 4.2E-19 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 TIGRFAM TIGR02103 pullul_strch: alpha-1,6-glucosidases, pullulanase-type 291 1203 0.0 T 11-10-2018 IPR011839 Alpha-1,6-glucosidases, pullulanase-type GO:0005975|GO:0051060 VV93_v1c30670 53c91e2c7e77d3f8dc4838aef642c0be 1203 SUPERFAMILY SSF49452 14 161 6.87E-27 T 11-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 250 319 1.8E-16 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 SUPERFAMILY SSF103039 4 230 5.75E-21 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 SUPERFAMILY SSF101801 247 322 3.53E-13 T 11-10-2018 IPR036429 SpoA-like superfamily VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 320 1.8E-121 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 Gene3D G3DSA:3.40.1550.10 43 230 1.3E-55 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 Pfam PF02154 Flagellar motor switch protein FliM 37 229 2.2E-83 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 PIRSF PIRSF002888 1 328 9.6E-90 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 9.9E-19 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 9.9E-19 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 9.9E-19 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21770 d67282e3477ed193a02037ec3685e49d 347 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 9.9E-19 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Gene3D G3DSA:3.40.50.720 93 258 9.0E-115 T 11-10-2018 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Pfam PF11890 Domain of unknown function (DUF3410) 290 370 1.2E-28 T 11-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 SUPERFAMILY SSF52283 1 109 4.25E-23 T 11-10-2018 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 257 1.9E-34 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 284 1.3E-22 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 SUPERFAMILY SSF51735 93 258 1.13E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Gene3D G3DSA:3.40.50.720 1 278 9.0E-115 T 11-10-2018 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 358 46.198 T 11-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 Gene3D G3DSA:3.30.1370.170 294 377 7.1E-34 T 11-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 VV93_v1c21310 043a7b58e29991d5accad7f63f7a0e23 377 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 198 214 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 454 7.1E-162 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 430 8.7E-160 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 480 568 2.6E-17 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 SUPERFAMILY SSF143968 323 459 9.94E-51 T 11-10-2018 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 Gene3D G3DSA:3.40.1670.10 479 583 1.4E-20 T 11-10-2018 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 Gene3D G3DSA:3.40.1670.10 337 453 1.2E-43 T 11-10-2018 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 SUPERFAMILY SSF50475 3 322 1.45E-122 T 11-10-2018 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 Gene3D G3DSA:1.20.5.570 584 617 1.9E-14 T 11-10-2018 VV93_v1c29000 2224fbc90489ee3262d14202ee1b3fcd 617 SUPERFAMILY SSF143968 480 615 1.28E-31 T 11-10-2018 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 Gene3D G3DSA:3.20.20.70 2 232 2.3E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 SUPERFAMILY SSF51366 1 228 4.08E-76 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 231 40.474 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 225 3.9E-51 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 SMART SM00934 5 226 2.6E-100 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c12200 b2d914574c51cc81b7834fbedbd6862d 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 226 4.7E-57 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 Gene3D G3DSA:3.40.50.2300 62 308 1.4E-83 T 11-10-2018 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.1E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 SMART SM00354 1 71 1.1E-26 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 SUPERFAMILY SSF53822 61 329 1.36E-86 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 Gene3D G3DSA:3.40.50.2300 160 289 1.4E-83 T 11-10-2018 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 Gene3D G3DSA:1.10.260.40 1 59 6.1E-21 T 11-10-2018 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 SUPERFAMILY SSF47413 2 59 3.07E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 8.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 8.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31250 0f29168e407f2cda35b3955f1d9e27ea 334 Pfam PF13377 Periplasmic binding protein-like domain 168 328 5.8E-37 T 11-10-2018 VV93_v1c17540 f400750d6a100c06dc9c877f703ec69c 302 Gene3D G3DSA:3.40.50.1820 20 301 2.4E-86 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c17540 f400750d6a100c06dc9c877f703ec69c 302 Pfam PF00561 alpha/beta hydrolase fold 25 126 2.2E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c17540 f400750d6a100c06dc9c877f703ec69c 302 SUPERFAMILY SSF53474 20 298 4.28E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c03370 a66dd4cb821d9762b6cf4b8195d1e793 391 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 380 4.9E-96 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c03370 a66dd4cb821d9762b6cf4b8195d1e793 391 PIRSF PIRSF000390 3 389 1.4E-119 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c03370 a66dd4cb821d9762b6cf4b8195d1e793 391 SUPERFAMILY SSF53383 8 386 5.38E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c03370 a66dd4cb821d9762b6cf4b8195d1e793 391 Gene3D G3DSA:3.40.640.10 3 256 2.5E-86 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c03370 a66dd4cb821d9762b6cf4b8195d1e793 391 Gene3D G3DSA:3.90.1150.10 257 388 5.1E-15 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 3.2E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 Gene3D G3DSA:3.50.50.60 10 312 7.4E-128 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 2.9E-123 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 SUPERFAMILY SSF51905 4 313 5.65E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.9E-38 T 11-10-2018 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.9E-38 T 11-10-2018 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.9E-38 T 11-10-2018 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.9E-38 T 11-10-2018 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.9E-38 T 11-10-2018 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 Gene3D G3DSA:3.50.50.60 118 244 7.4E-128 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 4.8E-48 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c13660 0ba974a77feeb02f679f517d1e32c016 319 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 SMART SM01382 124 252 1.7E-91 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 7.7E-34 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 5.3E-130 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 SUPERFAMILY SSF50249 2 125 2.64E-49 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 PIRSF PIRSF002158 13 274 1.0E-100 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.889 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 SMART SM01383 42 118 1.0E-46 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 6.1E-56 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Gene3D G3DSA:4.10.950.10 196 274 5.8E-37 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Gene3D G3DSA:2.40.50.140 1 114 5.1E-50 T 11-10-2018 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 Gene3D G3DSA:2.30.30.30 115 195 1.1E-31 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 VV93_v1c03490 bd3ad6b1483c2618e66f682baeac1342 274 SUPERFAMILY SSF50104 127 272 4.03E-61 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c22130 f13f4da042476cf4f5e35f9cbf046db0 154 Pfam PF00578 AhpC/TSA family 6 133 5.9E-37 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c22130 f13f4da042476cf4f5e35f9cbf046db0 154 SUPERFAMILY SSF52833 3 153 5.53E-48 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c22130 f13f4da042476cf4f5e35f9cbf046db0 154 PIRSF PIRSF000239 1 144 1.2E-18 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c22130 f13f4da042476cf4f5e35f9cbf046db0 154 Gene3D G3DSA:3.40.30.10 2 153 6.3E-47 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Gene3D G3DSA:2.20.25.90 5 50 2.0E-11 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 6 50 1.0E-13 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Pfam PF04324 BFD-like [2Fe-2S] binding domain 823 872 1.3E-13 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 PIRSF PIRSF036643 3 703 4.7E-130 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Pfam PF00384 Molybdopterin oxidoreductase 64 479 3.1E-77 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 SMART SM00926 5 51 8.2E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 SUPERFAMILY SSF53706 5 561 7.72E-171 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 7 24 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Gene3D G3DSA:1.10.10.1100 823 877 4.5E-13 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Gene3D G3DSA:3.40.50.740 63 534 2.7E-159 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Gene3D G3DSA:2.40.40.20 577 700 2.2E-24 T 11-10-2018 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Pfam PF01568 Molydopterin dinucleotide binding domain 579 689 8.0E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 SUPERFAMILY SSF50692 579 698 8.36E-26 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VV93_v1c38950 5bc2255f1c96e1de95a7d908b62afce7 880 Gene3D G3DSA:3.40.228.10 128 334 2.7E-159 T 11-10-2018 VV93_v1c17990 430135bcef850d741e3cc9a8b74574c4 332 Pfam PF00535 Glycosyl transferase family 2 8 124 2.9E-15 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VV93_v1c17990 430135bcef850d741e3cc9a8b74574c4 332 Gene3D G3DSA:3.90.550.10 1 206 3.9E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c17990 430135bcef850d741e3cc9a8b74574c4 332 SUPERFAMILY SSF53448 3 216 2.44E-37 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c14680 4a14988f440e0da0bc4660d19180dac9 211 PIRSF PIRSF006324 1 210 4.8E-56 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c14680 4a14988f440e0da0bc4660d19180dac9 211 Pfam PF01810 LysE type translocator 15 208 9.8E-32 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 90 6.9E-27 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 6.9E-27 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 76 6.9E-27 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 6.9E-27 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 6.9E-27 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 Gene3D G3DSA:3.20.20.10 35 277 1.8E-151 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 58 76 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 SUPERFAMILY SSF50621 261 414 1.05E-51 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 5 412 4.2E-167 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 16 413 40.891 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 2.5E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 165 174 2.5E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 2.5E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 76 93 2.5E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 Gene3D G3DSA:2.40.37.10 17 404 1.8E-151 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 282 6.8E-73 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 31 370 5.0E-25 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 229 242 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site VV93_v1c00760 8988b19f4f52871ba040ad74cb42552d 417 SUPERFAMILY SSF51419 27 284 7.07E-82 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c21780 e85f880b046b9a7ebf1428064f2e314c 165 Pfam PF03748 Flagellar basal body-associated protein FliL 64 165 4.2E-21 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 Gene3D G3DSA:3.40.50.300 344 592 1.8E-67 T 11-10-2018 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 SUPERFAMILY SSF52540 350 579 8.36E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 Gene3D G3DSA:1.20.1560.10 2 333 2.4E-51 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 20 554 1.6E-175 T 11-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 SUPERFAMILY SSF90123 12 330 3.14E-55 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 Pfam PF00664 ABC transporter transmembrane region 25 292 1.4E-42 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 SMART SM00382 375 566 3.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13650 2316252d29a46ee7cd8291e3cd03d173 595 Pfam PF00005 ABC transporter 368 512 1.6E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c04970 21d71f4209c63428d2e9a3e3dae5faa4 329 SUPERFAMILY SSF52540 26 174 5.16E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04970 21d71f4209c63428d2e9a3e3dae5faa4 329 Gene3D G3DSA:3.40.50.300 2 202 1.8E-23 T 11-10-2018 VV93_v1c04970 21d71f4209c63428d2e9a3e3dae5faa4 329 Pfam PF01926 50S ribosome-binding GTPase 42 137 1.7E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 SUPERFAMILY SSF54523 12 90 9.42E-8 T 11-10-2018 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 7 21 7.6E-21 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 22 36 7.6E-21 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 PRINTS PR00885 Bacterial general secretion pathway protein H signature 148 163 7.6E-21 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 Pfam PF12019 Type II transport protein GspH 47 185 3.8E-12 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 Gene3D G3DSA:3.55.40.10 39 199 2.6E-48 T 11-10-2018 VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 4.4E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02000 c7fa92c0dbdba2cbc20908816c21d228 200 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 8 186 7.4E-17 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c33410 0eb3a55341506038359f94e0f23dd4c3 317 Pfam PF08349 Protein of unknown function (DUF1722) 192 308 6.3E-43 T 11-10-2018 IPR013560 Domain of unknown function DUF1722 VV93_v1c33410 0eb3a55341506038359f94e0f23dd4c3 317 PIRSF PIRSF037004 1 317 9.8E-140 T 11-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 VV93_v1c33410 0eb3a55341506038359f94e0f23dd4c3 317 Pfam PF04463 Protein of unknown function (DUF523) 8 149 1.5E-37 T 11-10-2018 IPR007553 Domain of unknown function DUF523 VV93_v1c35100 77449b8ae27c550f1da7fa6b280314e9 644 Gene3D G3DSA:2.60.40.10 151 223 3.0E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c35100 77449b8ae27c550f1da7fa6b280314e9 644 Gene3D G3DSA:2.60.40.10 45 124 3.8E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c35100 77449b8ae27c550f1da7fa6b280314e9 644 Gene3D G3DSA:2.60.40.10 225 319 3.6E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c35100 77449b8ae27c550f1da7fa6b280314e9 644 Gene3D G3DSA:3.80.10.10 327 638 1.7E-41 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily VV93_v1c35100 77449b8ae27c550f1da7fa6b280314e9 644 SUPERFAMILY SSF52058 351 626 2.35E-23 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 Pfam PF00375 Sodium:dicarboxylate symporter family 15 397 9.5E-66 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 Gene3D G3DSA:1.10.3860.10 3 405 3.3E-71 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 SUPERFAMILY SSF118215 15 399 4.84E-97 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 3.8E-13 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 PRINTS PR00173 Glutamate-aspartate symporter signature 220 239 3.8E-13 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 PRINTS PR00173 Glutamate-aspartate symporter signature 185 204 3.8E-13 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 PRINTS PR00173 Glutamate-aspartate symporter signature 13 33 3.8E-13 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 3.8E-13 T 11-10-2018 VV93_v1c30790 2ed563618a56cbdf4c101946cbf0f071 406 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 3 404 36.377 T 11-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 VV93_v1c11590 3de0ae36398ec23173e287959b313a24 170 SUPERFAMILY SSF55021 89 167 5.04E-10 T 11-10-2018 VV93_v1c11590 3de0ae36398ec23173e287959b313a24 170 Gene3D G3DSA:3.30.70.260 84 170 7.1E-13 T 11-10-2018 VV93_v1c11590 3de0ae36398ec23173e287959b313a24 170 Pfam PF13740 ACT domain 5 66 2.3E-9 T 11-10-2018 VV93_v1c11590 3de0ae36398ec23173e287959b313a24 170 PIRSF PIRSF028103 1 169 3.9E-42 T 11-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 VV93_v1c33560 c70b6a1a332dfe8759ac605af157bc01 273 Pfam PF12849 PBP superfamily domain 19 258 1.2E-40 T 11-10-2018 IPR024370 PBP domain VV93_v1c33560 c70b6a1a332dfe8759ac605af157bc01 273 SUPERFAMILY SSF53850 16 273 9.92E-72 T 11-10-2018 VV93_v1c33560 c70b6a1a332dfe8759ac605af157bc01 273 Gene3D G3DSA:3.40.190.10 99 233 2.1E-83 T 11-10-2018 VV93_v1c33560 c70b6a1a332dfe8759ac605af157bc01 273 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 11 271 3.9E-77 T 11-10-2018 IPR011862 Phosphate binding protein GO:0042301 VV93_v1c33560 c70b6a1a332dfe8759ac605af157bc01 273 Gene3D G3DSA:3.40.190.10 30 270 2.1E-83 T 11-10-2018 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SUPERFAMILY SSF52540 159 545 1.73E-100 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Gene3D G3DSA:1.10.8.60 766 857 7.9E-26 T 11-10-2018 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Gene3D G3DSA:3.40.50.300 348 544 6.4E-67 T 11-10-2018 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 2.2E-11 T 11-10-2018 IPR004176 Clp, N-terminal VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 2.5E-13 T 11-10-2018 IPR004176 Clp, N-terminal VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 4.8E-26 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SUPERFAMILY SSF52540 546 854 4.77E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SUPERFAMILY SSF81923 4 156 4.05E-42 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Gene3D G3DSA:3.40.50.300 158 347 4.5E-75 T 11-10-2018 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 335 3.2E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SMART SM01086 766 855 4.4E-36 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 759 4.6E-57 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SMART SM00382 198 344 3.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 SMART SM00382 597 748 1.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Gene3D G3DSA:1.10.1780.10 1 148 4.9E-33 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c06510 2e7ddf68a77beae48832270cbcfb26d6 857 Gene3D G3DSA:3.40.50.300 550 764 6.2E-90 T 11-10-2018 VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 247 2.0E-39 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 SUPERFAMILY SSF53901 216 406 1.75E-59 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 Gene3D G3DSA:3.40.47.10 1 255 1.7E-58 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 Gene3D G3DSA:3.40.47.10 261 408 1.5E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 SUPERFAMILY SSF53901 2 252 1.34E-53 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 363 6.8E-28 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VV93_v1c09880 cbe74f9825a5d8f1fe19c7a5f66f5dcd 409 SMART SM00825 Beta-ketoacyl synthase 5 409 1.6E-10 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VV93_v1c25490 cf94e5abcf860c05958c00651f5e8c00 86 SUPERFAMILY SSF109910 2 79 6.15E-26 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VV93_v1c25490 cf94e5abcf860c05958c00651f5e8c00 86 Gene3D G3DSA:1.10.150.250 1 86 5.4E-37 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily VV93_v1c25490 cf94e5abcf860c05958c00651f5e8c00 86 Pfam PF03937 Flavinator of succinate dehydrogenase 7 77 2.4E-24 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 663 25.358 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Pfam PF08676 MutL C terminal dimerisation domain 480 619 7.9E-31 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 120 1.8E-11 T 11-10-2018 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 SUPERFAMILY SSF118116 479 662 8.76E-38 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Gene3D G3DSA:3.30.230.10 217 329 8.3E-40 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 SUPERFAMILY SSF55874 1 204 6.68E-53 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 SMART SM01340 212 330 1.7E-57 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 SMART SM00853 483 625 5.3E-19 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Gene3D G3DSA:2.30.42.20 480 661 5.2E-55 T 11-10-2018 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Gene3D G3DSA:3.30.565.10 1 216 5.7E-71 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 1.6E-39 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 SUPERFAMILY SSF54211 191 330 8.34E-37 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 6.6E-101 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 VV93_v1c28010 cbd5c05067d662fb2e905e239edf31e2 664 Gene3D G3DSA:3.30.1370.100 524 617 5.2E-55 T 11-10-2018 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Pfam PF13183 4Fe-4S dicluster domain 570 681 3.1E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Pfam PF01565 FAD binding domain 52 191 3.0E-35 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Gene3D G3DSA:3.30.70.2740 414 495 4.9E-5 T 11-10-2018 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 SUPERFAMILY SSF56176 18 277 3.6E-50 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 SUPERFAMILY SSF55103 253 538 1.11E-51 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 SUPERFAMILY SSF46548 571 685 1.26E-6 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Gene3D G3DSA:1.10.45.10 514 535 4.9E-5 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Gene3D G3DSA:3.30.465.40 16 212 1.8E-46 T 11-10-2018 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 Pfam PF02913 FAD linked oxidases, C-terminal domain 276 534 5.0E-60 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 VV93_v1c17160 0533dfd854680315e881de06367d89f0 1014 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 667 678 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 1.4E-58 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 101 2.7E-31 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 108 121 3.8E-28 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 3.8E-28 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 3.8E-28 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 3.8E-28 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 3.8E-28 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 SUPERFAMILY SSF51735 1 180 5.11E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 SMART SM00846 3 152 1.3E-67 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 Gene3D G3DSA:3.30.360.10 151 315 9.2E-125 T 11-10-2018 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 SUPERFAMILY SSF55347 152 314 8.04E-63 T 11-10-2018 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 323 4.3E-119 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 PIRSF PIRSF000149 1 333 5.3E-113 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c00900 3a927b85d74bd30de403ff7f4e4d1888 333 Gene3D G3DSA:3.40.50.720 4 327 9.2E-125 T 11-10-2018 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 PRINTS PR00094 Adenylate kinase signature 4 17 1.7E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 PRINTS PR00094 Adenylate kinase signature 32 46 1.7E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 PRINTS PR00094 Adenylate kinase signature 156 171 1.7E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 PRINTS PR00094 Adenylate kinase signature 173 187 1.7E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 PRINTS PR00094 Adenylate kinase signature 81 97 1.7E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 SUPERFAMILY SSF52540 1 202 1.6E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 Gene3D G3DSA:3.40.50.300 1 214 9.7E-78 T 11-10-2018 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.669 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 9.0E-15 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 Pfam PF00406 Adenylate kinase 5 185 2.4E-59 T 11-10-2018 VV93_v1c09260 32c81eb975716cbad88d853d04efb903 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 9.6E-75 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 3.0E-198 T 11-10-2018 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 1.2E-29 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Gene3D G3DSA:3.40.50.12160 3 138 1.8E-34 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 1.7E-152 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Gene3D G3DSA:3.80.30.20 145 377 2.7E-83 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 72.818 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Pfam PF04055 Radical SAM superfamily 151 325 3.9E-28 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 Pfam PF01938 TRAM domain 379 440 4.8E-18 T 11-10-2018 IPR002792 TRAM domain VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 SMART SM00729 147 367 1.5E-64 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c08540 6bef780a12ccc37de8a57abdd4fc74fe 474 SUPERFAMILY SSF102114 123 374 4.05E-62 T 11-10-2018 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Gene3D G3DSA:3.20.20.70 431 793 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Pfam PF00310 Glutamine amidotransferases class-II 13 426 3.1E-177 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 SUPERFAMILY SSF51395 434 1191 1.71E-247 T 11-10-2018 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 SUPERFAMILY SSF69336 1213 1465 6.8E-88 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Pfam PF04898 Glutamate synthase central domain 458 738 1.7E-100 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Pfam PF01493 GXGXG motif 1236 1419 3.4E-73 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Gene3D G3DSA:3.20.20.70 484 1173 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Gene3D G3DSA:2.160.20.60 1200 1468 6.2E-101 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Gene3D G3DSA:3.60.20.10 13 546 0.0 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 SUPERFAMILY SSF56235 13 429 7.02E-150 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c05780 815c92830563a4c67cb8777725ed4c96 1487 Pfam PF01645 Conserved region in glutamate synthase 794 1157 4.8E-152 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 VV93_v1c33040 04f0f93273425b4d42e1829ebc41ee01 376 Gene3D G3DSA:3.60.15.10 71 312 1.3E-32 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c33040 04f0f93273425b4d42e1829ebc41ee01 376 Pfam PF00753 Metallo-beta-lactamase superfamily 94 268 1.1E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c33040 04f0f93273425b4d42e1829ebc41ee01 376 SUPERFAMILY SSF56281 75 315 3.5E-39 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c33040 04f0f93273425b4d42e1829ebc41ee01 376 SMART SM00849 93 287 9.6E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c42720 ef663e55e1f773c555f8d6498222c493 546 Pfam PF00884 Sulfatase 240 529 4.3E-48 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c42720 ef663e55e1f773c555f8d6498222c493 546 SUPERFAMILY SSF53649 239 531 2.43E-18 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c42720 ef663e55e1f773c555f8d6498222c493 546 Gene3D G3DSA:3.40.720.10 218 546 5.0E-85 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c42720 ef663e55e1f773c555f8d6498222c493 546 Pfam PF08019 Domain of unknown function (DUF1705) 58 209 2.4E-51 T 11-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 VV93_v1c09450 357580ae679ac91485871a09d001ba56 127 SUPERFAMILY SSF55298 3 126 1.57E-47 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c09450 357580ae679ac91485871a09d001ba56 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 125 7.0E-50 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VV93_v1c09450 357580ae679ac91485871a09d001ba56 127 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 VV93_v1c09450 357580ae679ac91485871a09d001ba56 127 Gene3D G3DSA:3.30.1330.40 1 127 8.0E-53 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c09450 357580ae679ac91485871a09d001ba56 127 Pfam PF01042 Endoribonuclease L-PSP 9 125 3.1E-43 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 Gene3D G3DSA:3.40.50.1820 5 254 1.0E-67 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 SUPERFAMILY SSF53474 5 253 2.13E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 2.2E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 95 2.2E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 2.2E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 2.2E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 Pfam PF12697 Alpha/beta hydrolase family 16 247 2.0E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00412 Epoxide hydrolase signature 230 252 3.5E-7 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00412 Epoxide hydrolase signature 82 95 3.5E-7 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00412 Epoxide hydrolase signature 96 109 3.5E-7 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c09410 432ae79c5add3c7b6aa72c6cb024d192 255 PRINTS PR00412 Epoxide hydrolase signature 39 54 3.5E-7 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 51.168 T 11-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 Gene3D G3DSA:3.40.140.10 180 295 3.8E-29 T 11-10-2018 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 Gene3D G3DSA:3.40.140.10 29 179 1.8E-43 T 11-10-2018 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 60 140 2.9E-12 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 277 3.3E-44 T 11-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 PIRSF PIRSF006334 14 295 9.7E-113 T 11-10-2018 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 SUPERFAMILY SSF53927 152 290 9.89E-41 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 SUPERFAMILY SSF53927 1 147 3.51E-41 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c17220 d18e9cbfc7ac06bad42529d3822fc3b5 295 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 29 295 7.8E-101 T 11-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SUPERFAMILY SSF55271 1 106 7.85E-40 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 1 842 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Gene3D G3DSA:1.10.1420.10 257 549 1.3E-105 T 11-10-2018 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SMART SM00533 274 581 3.7E-105 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Gene3D G3DSA:3.40.1170.10 1 112 1.7E-49 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Pfam PF05190 MutS family domain IV 418 508 7.7E-29 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Gene3D G3DSA:3.30.420.110 118 252 5.6E-35 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SUPERFAMILY SSF53150 105 257 1.16E-40 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Pfam PF01624 MutS domain I 1 110 7.6E-40 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Gene3D G3DSA:3.40.50.300 558 842 1.3E-100 T 11-10-2018 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Pfam PF05188 MutS domain II 119 244 1.3E-30 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Gene3D G3DSA:1.10.1420.10 377 493 1.3E-105 T 11-10-2018 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SUPERFAMILY SSF48334 258 555 1.44E-89 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Pfam PF05192 MutS domain III 260 549 3.1E-40 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SMART SM00534 597 784 7.8E-119 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Pfam PF00488 MutS domain V 600 787 5.7E-87 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 SUPERFAMILY SSF52540 557 787 3.99E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 1 836 24.829 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 PIRSF PIRSF037677 179 824 1.4E-130 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 PIRSF PIRSF037677 1 172 7.8E-25 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 VV93_v1c25180 2032523c0876d262012b5dc519fc8e50 844 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 678 694 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 VV93_v1c30580 26f388b1a602cd9f96af100be7526767 398 SUPERFAMILY SSF55073 196 363 1.18E-39 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c30580 26f388b1a602cd9f96af100be7526767 398 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 358 2.1E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c30580 26f388b1a602cd9f96af100be7526767 398 Gene3D G3DSA:3.30.70.270 186 373 5.6E-48 T 11-10-2018 VV93_v1c30580 26f388b1a602cd9f96af100be7526767 398 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 188 361 3.6E-40 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c30580 26f388b1a602cd9f96af100be7526767 398 SMART SM00267 180 362 4.9E-48 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Pfam PF01565 FAD binding domain 23 144 2.2E-19 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Gene3D G3DSA:3.90.78.10 223 346 2.7E-43 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Gene3D G3DSA:3.30.43.10 1 72 2.1E-22 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 210 332 4.0E-32 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Gene3D G3DSA:3.30.465.10 73 222 3.6E-52 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 333 6.8E-91 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 SUPERFAMILY SSF56176 8 197 1.83E-41 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 347 80.927 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c28860 4ffef68136ed31c07d263871ffe88a46 347 SUPERFAMILY SSF56194 207 342 1.83E-46 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 Pfam PF02567 Phenazine biosynthesis-like protein 10 264 3.2E-62 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 Gene3D G3DSA:3.10.310.10 8 264 5.1E-85 T 11-10-2018 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 227 9.9E-38 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 PIRSF PIRSF016184 3 268 4.8E-51 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 SUPERFAMILY SSF54506 4 268 3.02E-66 T 11-10-2018 VV93_v1c42580 489314fdc8805ed038688b70c492b56a 268 Gene3D G3DSA:3.10.310.10 118 256 5.1E-85 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 9 91 1.5E-28 T 11-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Gene3D G3DSA:3.30.70.260 296 383 3.8E-25 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Gene3D G3DSA:1.20.59.10 3 112 1.9E-31 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Gene3D G3DSA:3.40.190.10 113 287 4.1E-53 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 SMART SM00830 12 93 1.4E-21 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 SUPERFAMILY SSF55021 284 381 1.37E-25 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 329 336 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Gene3D G3DSA:3.40.190.10 193 278 4.1E-53 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 265 287 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 PIRSF PIRSF001500 1 384 5.0E-141 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Pfam PF00800 Prephenate dehydratase 110 291 8.4E-58 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 SUPERFAMILY SSF53850 109 294 1.52E-54 T 11-10-2018 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 SUPERFAMILY SSF48600 7 95 4.4E-19 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06460 ea7f3d983d648b94cffaf27b815d66d3 392 Pfam PF01817 Chorismate mutase type II 12 91 8.5E-17 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 160 9.6E-49 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 3.0E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 3.0E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 3.0E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 SUPERFAMILY SSF50891 1 162 2.05E-59 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 PIRSF PIRSF001467 1 163 2.8E-28 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 Gene3D G3DSA:2.40.100.10 1 164 2.3E-66 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c12740 84dcdbe82852e26ee97659fd430753fe 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VV93_v1c12870 032b8123a60733bba4755a92114feddb 394 PIRSF PIRSF000014 1 394 4.1E-162 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VV93_v1c12870 032b8123a60733bba4755a92114feddb 394 Gene3D G3DSA:1.10.3820.10 15 192 1.0E-38 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VV93_v1c12870 032b8123a60733bba4755a92114feddb 394 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 7 394 5.9E-189 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 VV93_v1c12870 032b8123a60733bba4755a92114feddb 394 SUPERFAMILY SSF48695 13 187 9.53E-61 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c12870 032b8123a60733bba4755a92114feddb 394 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 16 187 1.9E-72 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 25 147 30.218 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 Gene3D G3DSA:1.20.120.910 17 147 5.5E-36 T 11-10-2018 VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 PRINTS PR00618 DksA/TraR zinc finger signature 123 135 9.7E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 PRINTS PR00618 DksA/TraR zinc finger signature 111 122 9.7E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 SUPERFAMILY SSF109635 7 107 3.01E-37 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 108 140 3.0E-10 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 111 135 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 29 137 9.9E-52 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 VV93_v1c24710 f616ea71206e1830dc6d9336140e6b9f 148 SUPERFAMILY SSF57716 108 146 5.84E-10 T 11-10-2018 VV93_v1c09320 3c203cd53d734a85e7504b184c1dc7a0 530 Pfam PF00999 Sodium/hydrogen exchanger family 3 350 2.5E-35 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c09320 3c203cd53d734a85e7504b184c1dc7a0 530 Pfam PF02254 TrkA-N domain 388 504 3.9E-19 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c09320 3c203cd53d734a85e7504b184c1dc7a0 530 Gene3D G3DSA:1.20.1530.20 2 362 2.7E-44 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily VV93_v1c09320 3c203cd53d734a85e7504b184c1dc7a0 530 SUPERFAMILY SSF51735 387 518 1.36E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c09320 3c203cd53d734a85e7504b184c1dc7a0 530 Gene3D G3DSA:3.40.50.720 379 527 5.1E-32 T 11-10-2018 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 19 96 3.9E-9 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 SUPERFAMILY SSF81296 16 132 5.32E-24 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 16 637 1.1E-200 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 Gene3D G3DSA:2.60.40.1180 564 656 4.2E-7 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 SMART SM00642 142 548 9.1E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 SUPERFAMILY SSF51011 565 656 5.11E-15 T 11-10-2018 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 SUPERFAMILY SSF51445 121 551 6.63E-97 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 Pfam PF00128 Alpha amylase, catalytic domain 209 260 6.1E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 Gene3D G3DSA:2.60.40.10 3 123 1.4E-20 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30600 a2c6717c61f1bbd32bf0d1e53dded433 670 Gene3D G3DSA:3.20.20.80 125 558 2.7E-140 T 11-10-2018 VV93_v1c10520 1ab42626d01af3bef875476f85dce974 361 Gene3D G3DSA:3.40.50.1100 25 324 1.7E-67 T 11-10-2018 VV93_v1c10520 1ab42626d01af3bef875476f85dce974 361 Gene3D G3DSA:3.40.50.1100 51 157 1.7E-67 T 11-10-2018 VV93_v1c10520 1ab42626d01af3bef875476f85dce974 361 SUPERFAMILY SSF53686 23 335 5.5E-70 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c10520 1ab42626d01af3bef875476f85dce974 361 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 32 316 3.4E-40 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Pfam PF01103 Surface antigen 448 804 2.2E-89 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:2.40.160.50 425 804 4.4E-121 T 11-10-2018 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:3.10.20.310 264 346 3.9E-14 T 11-10-2018 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 PIRSF PIRSF006076 1 804 3.5E-245 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:3.10.20.310 18 91 3.9E-20 T 11-10-2018 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Pfam PF07244 Surface antigen variable number repeat 176 263 2.5E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Pfam PF07244 Surface antigen variable number repeat 347 420 5.4E-16 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Pfam PF07244 Surface antigen variable number repeat 92 172 3.5E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Pfam PF07244 Surface antigen variable number repeat 266 344 2.2E-11 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:3.10.20.310 175 263 2.3E-22 T 11-10-2018 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 804 25.725 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:3.10.20.310 347 424 6.6E-26 T 11-10-2018 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 804 2.0E-278 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 VV93_v1c22680 4db732d1029a526c34050a99684c84d1 804 Gene3D G3DSA:3.10.20.310 92 174 1.4E-17 T 11-10-2018 VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 PRINTS PR00412 Epoxide hydrolase signature 237 259 1.2E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 PRINTS PR00412 Epoxide hydrolase signature 24 42 1.2E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 PRINTS PR00412 Epoxide hydrolase signature 205 221 1.2E-6 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 Pfam PF00561 alpha/beta hydrolase fold 19 121 6.1E-22 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 Gene3D G3DSA:3.40.50.1820 7 262 6.7E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c20210 a14c9ee10b905c4857706d2477406846 264 SUPERFAMILY SSF53474 12 261 7.1E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 Pfam PF02881 SRP54-type protein, helical bundle domain 111 172 7.6E-14 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 SUPERFAMILY SSF52540 189 392 3.02E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 119 392 65.184 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 Gene3D G3DSA:1.20.120.140 93 390 8.8E-118 T 11-10-2018 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 Pfam PF00448 SRP54-type protein, GTPase domain 192 391 4.5E-78 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 Gene3D G3DSA:3.40.50.300 187 380 8.8E-118 T 11-10-2018 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 SUPERFAMILY SSF47364 91 170 1.07E-22 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 119 391 3.2E-116 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 SMART SM00382 190 370 2.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 SMART SM00962 191 392 1.1E-124 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 365 378 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c01010 fc84372d37d7f69442923dbca83b6673 395 SMART SM00963 96 176 2.0E-26 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 Pfam PF01196 Ribosomal protein L17 20 116 1.1E-34 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 Gene3D G3DSA:3.90.1030.10 1 117 4.2E-48 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 SUPERFAMILY SSF64263 1 119 5.49E-51 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.798 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03720 dbae8455d88ce1c4540f06f7422c52ec 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 5.7E-49 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c22340 8e6bed86bf8fb1f41e4614bccb90bf1a 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 116 1.3E-46 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 VV93_v1c22340 8e6bed86bf8fb1f41e4614bccb90bf1a 116 Gene3D G3DSA:3.40.30.10 1 116 1.1E-47 T 11-10-2018 VV93_v1c22340 8e6bed86bf8fb1f41e4614bccb90bf1a 116 SUPERFAMILY SSF52833 2 116 3.17E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c22340 8e6bed86bf8fb1f41e4614bccb90bf1a 116 Pfam PF03960 ArsC family 6 115 1.4E-19 T 11-10-2018 IPR006660 Arsenate reductase-like VV93_v1c17910 9fb89b6b3b8e07107876bb139895d9a0 437 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 415 6.0E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17910 9fb89b6b3b8e07107876bb139895d9a0 437 Gene3D G3DSA:3.30.70.270 254 423 4.7E-53 T 11-10-2018 VV93_v1c17910 9fb89b6b3b8e07107876bb139895d9a0 437 SMART SM00267 250 422 2.0E-56 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17910 9fb89b6b3b8e07107876bb139895d9a0 437 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 260 416 5.3E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17910 9fb89b6b3b8e07107876bb139895d9a0 437 SUPERFAMILY SSF55073 266 420 1.49E-46 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c20010 b97bc7ad337e892afa485d0c44d483b9 323 Gene3D G3DSA:3.40.50.150 63 296 1.7E-21 T 11-10-2018 VV93_v1c20010 b97bc7ad337e892afa485d0c44d483b9 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 13 322 54.342 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VV93_v1c20010 b97bc7ad337e892afa485d0c44d483b9 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 2.3E-172 T 11-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like VV93_v1c20010 b97bc7ad337e892afa485d0c44d483b9 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 12 321 1.1E-146 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 VV93_v1c20010 b97bc7ad337e892afa485d0c44d483b9 323 SUPERFAMILY SSF53335 91 323 2.81E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Gene3D G3DSA:3.30.565.10 859 1011 4.6E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SMART SM00387 897 1006 1.0E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 PRINTS PR00344 Bacterial sensor protein C-terminal signature 966 984 1.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 PRINTS PR00344 Bacterial sensor protein C-terminal signature 933 947 1.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 PRINTS PR00344 Bacterial sensor protein C-terminal signature 990 1003 1.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 PRINTS PR00344 Bacterial sensor protein C-terminal signature 951 961 1.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SUPERFAMILY SSF52172 1025 1143 4.41E-20 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Pfam PF12860 PAS fold 634 748 8.0E-44 T 11-10-2018 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SMART SM00388 788 853 1.1E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Gene3D G3DSA:3.40.50.2300 1022 1143 7.9E-19 T 11-10-2018 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SUPERFAMILY SSF47384 775 854 6.28E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SUPERFAMILY SSF55785 626 741 2.93E-9 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SUPERFAMILY SSF55874 843 1002 3.01E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Gene3D G3DSA:1.20.1730.10 33 510 4.1E-9 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Gene3D G3DSA:3.30.450.20 616 746 6.6E-12 T 11-10-2018 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 SMART SM00448 1026 1139 8.6E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Gene3D G3DSA:1.10.287.130 747 851 4.1E-14 T 11-10-2018 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 898 1004 4.3E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Pfam PF00072 Response regulator receiver domain 1028 1139 1.5E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28470 0d2eac0f5ac074f8e9d7ba15a65ede23 1143 Pfam PF00512 His Kinase A (phospho-acceptor) domain 788 853 1.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.4E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.4E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.4E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.0E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.0E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.0E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 Gene3D G3DSA:3.40.50.720 1 265 2.2E-54 T 11-10-2018 VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 Pfam PF00106 short chain dehydrogenase 7 195 1.5E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 186 0.002 T 11-10-2018 VV93_v1c31180 7c58550fdde4628e1611d858b7c06b71 268 SUPERFAMILY SSF51735 1 264 1.0E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 623 45.819 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 386 622 1.5E-120 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 PRINTS PR00046 Major sigma-70 factor signature 414 427 3.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 PRINTS PR00046 Major sigma-70 factor signature 583 598 3.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 PRINTS PR00046 Major sigma-70 factor signature 438 446 3.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 PRINTS PR00046 Major sigma-70 factor signature 562 574 3.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 PRINTS PR00046 Major sigma-70 factor signature 598 609 3.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 SUPERFAMILY SSF88946 115 457 6.93E-98 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF04542 Sigma-70 region 2 390 459 1.7E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.8E-12 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Gene3D G3DSA:1.10.10.10 463 539 2.6E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 386 611 1.5E-37 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Gene3D G3DSA:1.10.601.10 113 459 2.8E-139 T 11-10-2018 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 SUPERFAMILY SSF88659 463 536 2.25E-20 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF04545 Sigma-70, region 4 558 611 1.8E-19 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Gene3D G3DSA:1.10.220.120 1 64 5.3E-29 T 11-10-2018 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF04539 Sigma-70 region 3 469 544 1.3E-28 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 SUPERFAMILY SSF88659 520 622 1.37E-25 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 414 427 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 583 609 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF03979 Sigma-70 factor, region 1.1 5 80 2.2E-28 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Gene3D G3DSA:1.10.10.10 540 624 4.8E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c05030 e5bdf2ebb31e1c48f15500dba46bcc8e 624 Pfam PF04546 Sigma-70, non-essential region 139 359 4.4E-68 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 SUPERFAMILY SSF111369 122 284 3.01E-8 T 11-10-2018 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:1.10.287.470 116 184 2.5E-11 T 11-10-2018 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:2.40.30.170 227 345 3.7E-24 T 11-10-2018 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:2.40.50.100 58 89 1.1E-8 T 11-10-2018 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 286 4.7E-19 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:1.10.287.470 90 113 1.1E-8 T 11-10-2018 VV93_v1c01260 7010311ab219a375e33fb9d302c647ae 368 SUPERFAMILY SSF111369 56 130 1.1E-9 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 SUPERFAMILY SSF111369 122 284 3.01E-8 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:1.10.287.470 116 184 2.5E-11 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:2.40.30.170 227 345 3.7E-24 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:2.40.50.100 58 89 1.1E-8 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 286 4.7E-19 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 Gene3D G3DSA:1.10.287.470 90 113 1.1E-8 T 11-10-2018 VV93_v1c34820 7010311ab219a375e33fb9d302c647ae 368 SUPERFAMILY SSF111369 56 130 1.1E-9 T 11-10-2018 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 Gene3D G3DSA:1.10.287.950 305 637 7.4E-78 T 11-10-2018 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 SUPERFAMILY SSF58104 328 637 9.02E-80 T 11-10-2018 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 439 603 3.1E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 SMART SM00283 375 636 2.5E-85 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 Gene3D G3DSA:3.30.450.20 158 282 5.8E-23 T 11-10-2018 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 SMART SM00304 306 360 3.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 Pfam PF02743 Cache domain 52 268 5.0E-13 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 502 531 7.1E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 7.1E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 473 500 7.1E-23 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c33670 1f459db516c432f4268ac1b4ba316991 637 Pfam PF00672 HAMP domain 307 356 1.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20470 b9ba131deb99f4b8883650f36f9b0e10 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 74 1.7E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c20470 b9ba131deb99f4b8883650f36f9b0e10 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 241 5.2E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c20470 b9ba131deb99f4b8883650f36f9b0e10 246 Gene3D G3DSA:1.10.3720.10 3 243 3.5E-48 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c20470 b9ba131deb99f4b8883650f36f9b0e10 246 SUPERFAMILY SSF161098 11 227 9.55E-39 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c10660 653fd7cdaf2eb7405bc5aec8d58ab0d4 138 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 11 134 37.051 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c10660 653fd7cdaf2eb7405bc5aec8d58ab0d4 138 Pfam PF01641 SelR domain 14 132 1.1E-52 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c10660 653fd7cdaf2eb7405bc5aec8d58ab0d4 138 SUPERFAMILY SSF51316 9 135 4.97E-57 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c10660 653fd7cdaf2eb7405bc5aec8d58ab0d4 138 Gene3D G3DSA:2.170.150.20 2 138 1.2E-59 T 11-10-2018 VV93_v1c10660 653fd7cdaf2eb7405bc5aec8d58ab0d4 138 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 10 135 1.4E-54 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 8.9E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 8.9E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 8.9E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 Gene3D G3DSA:3.40.190.10 174 274 1.8E-22 T 11-10-2018 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 Pfam PF03466 LysR substrate binding domain 99 302 7.3E-18 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 8.9E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 SUPERFAMILY SSF46785 6 88 2.27E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 SUPERFAMILY SSF53850 93 302 9.77E-27 T 11-10-2018 VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 Gene3D G3DSA:1.10.10.10 3 92 4.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c42800 0f797a0803fa091ce8e7900c8323aab1 313 Gene3D G3DSA:3.40.190.10 93 298 1.8E-22 T 11-10-2018 VV93_v1c24700 cd69dbb6157485d75a00cdd69dec06a2 238 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 237 53.857 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein VV93_v1c24700 cd69dbb6157485d75a00cdd69dec06a2 238 Gene3D G3DSA:3.40.1350.60 81 236 5.6E-56 T 11-10-2018 VV93_v1c24700 cd69dbb6157485d75a00cdd69dec06a2 238 Gene3D G3DSA:2.40.50.580 1 80 2.8E-26 T 11-10-2018 VV93_v1c24700 cd69dbb6157485d75a00cdd69dec06a2 238 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 1 229 1.9E-75 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein VV93_v1c24700 cd69dbb6157485d75a00cdd69dec06a2 238 Pfam PF03749 Sugar fermentation stimulation protein 14 229 1.8E-76 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Pfam PF01752 Collagenase 273 557 1.9E-110 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 601 672 3.3E-9 T 11-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 457 472 4.5E-31 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 391 407 4.5E-31 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 433 451 4.5E-31 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 373 387 4.5E-31 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 97 115 4.5E-31 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Gene3D G3DSA:1.10.1740.190 302 449 1.7E-31 T 11-10-2018 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Gene3D G3DSA:2.60.120.380 583 685 3.7E-12 T 11-10-2018 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Gene3D G3DSA:2.60.120.380 705 806 3.1E-6 T 11-10-2018 VV93_v1c45320 855bc1f50ccba90cdeecd6e7075f45ab 807 Pfam PF08453 Peptidase family M9 N-terminal 31 211 2.3E-55 T 11-10-2018 IPR013661 Peptidase M9, collagenase, N-terminal domain VV93_v1c40850 fb4110df589e97ee6cd4e1a17cc14bea 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c40850 fb4110df589e97ee6cd4e1a17cc14bea 308 Pfam PF00005 ABC transporter 22 165 5.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c40850 fb4110df589e97ee6cd4e1a17cc14bea 308 Gene3D G3DSA:3.40.50.300 2 239 1.9E-71 T 11-10-2018 VV93_v1c40850 fb4110df589e97ee6cd4e1a17cc14bea 308 SUPERFAMILY SSF52540 4 227 3.33E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c40850 fb4110df589e97ee6cd4e1a17cc14bea 308 SMART SM00382 30 212 3.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31050 b41d3c9724fc97c01204b521c053a547 259 Gene3D G3DSA:3.20.20.450 5 254 6.8E-64 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c31050 b41d3c9724fc97c01204b521c053a547 259 SMART SM00052 7 247 1.2E-16 T 11-10-2018 IPR001633 EAL domain VV93_v1c31050 b41d3c9724fc97c01204b521c053a547 259 SUPERFAMILY SSF141868 25 242 8.37E-58 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c31050 b41d3c9724fc97c01204b521c053a547 259 Pfam PF00563 EAL domain 24 242 6.3E-47 T 11-10-2018 IPR001633 EAL domain VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 Pfam PF07715 TonB-dependent Receptor Plug Domain 42 152 4.9E-26 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 Pfam PF00593 TonB dependent receptor 245 710 2.8E-61 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 Gene3D G3DSA:2.40.170.20 168 712 2.5E-113 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 Gene3D G3DSA:2.170.130.10 27 157 8.0E-36 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 27 712 6.5E-197 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 28 712 6.9E-197 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VV93_v1c37710 711067d4b98ef9f7a4b9364e9e670d27 712 SUPERFAMILY SSF56935 30 712 1.36E-113 T 11-10-2018 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 PIRSF PIRSF500064 3 809 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 SUPERFAMILY SSF69593 281 488 4.71E-25 T 11-10-2018 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 799 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 Pfam PF01553 Acyltransferase 289 424 9.2E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 SMART SM00563 300 427 3.2E-27 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 PIRSF PIRSF000437 19 809 0.0 T 11-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 VV93_v1c01100 3d4bf18cd1605f556046365099266f90 809 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 807 31.626 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 SUPERFAMILY SSF53671 4 333 2.23E-97 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 Gene3D G3DSA:3.40.50.1370 151 319 1.5E-145 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 3.8E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 3.8E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 3.8E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 3.8E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 3.6E-133 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 7.0E-44 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 330 4.0E-58 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 82.489 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.3E-31 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.3E-31 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.3E-31 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.3E-31 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 1.3E-31 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 VV93_v1c26420 f27c2057868300b60857452c8e19ab0e 334 Gene3D G3DSA:3.40.50.1370 5 329 1.5E-145 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 SUPERFAMILY SSF52540 3 441 4.72E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 100 8.7E-7 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 SMART SM01086 335 429 1.1E-19 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 Gene3D G3DSA:1.10.8.60 335 440 4.7E-40 T 11-10-2018 VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 1.0E-222 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 404 3.9E-5 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 SMART SM00382 49 332 7.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.115 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 VV93_v1c27440 c1b927494de027c96d21e91ad90216a0 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 171 329 1.5E-43 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 138 2.0E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Gene3D G3DSA:3.30.450.20 17 131 2.9E-16 T 11-10-2018 VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Gene3D G3DSA:3.30.70.270 140 309 6.3E-17 T 11-10-2018 VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SUPERFAMILY SSF141868 318 564 2.22E-72 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Gene3D G3DSA:3.20.20.450 313 566 1.5E-77 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SMART SM00052 313 559 2.2E-66 T 11-10-2018 IPR001633 EAL domain VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SMART SM00267 134 303 1.2E-7 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SUPERFAMILY SSF55785 26 136 1.5E-16 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SUPERFAMILY SSF55073 152 304 1.18E-14 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Pfam PF00990 Diguanylate cyclase, GGDEF domain 145 296 4.1E-12 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Pfam PF08447 PAS fold 45 121 4.8E-11 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 Pfam PF00563 EAL domain 320 554 5.8E-63 T 11-10-2018 IPR001633 EAL domain VV93_v1c18310 83f786b32a4ec2a81202433198133ae1 571 SMART SM00086 94 134 1.0E-5 T 11-10-2018 IPR001610 PAC motif VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 Pfam PF05547 Immune inhibitor A peptidase M6 170 378 2.2E-13 T 11-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 PIRSF PIRSF036597 968 1285 1.2E-134 T 11-10-2018 IPR012045 Peptidase M6, unassigned InhA-related VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 PIRSF PIRSF036597 7 977 0.0 T 11-10-2018 IPR012045 Peptidase M6, unassigned InhA-related VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 SUPERFAMILY SSF55486 277 360 2.2E-6 T 11-10-2018 VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 Gene3D G3DSA:2.60.40.10 794 876 5.3E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 Gene3D G3DSA:2.60.40.10 1068 1150 2.0E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c35910 2a766aa9df6ac78d07f2e353d0d5f7d6 1286 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 150 437 2.9E-80 T 11-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 215 290 4.32E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 302 394 5.6E-23 T 11-10-2018 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 128 214 1.8E-23 T 11-10-2018 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 33 127 1.1E-15 T 11-10-2018 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 215 301 1.6E-23 T 11-10-2018 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 129 201 9.8E-12 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 216 288 9.8E-12 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 303 373 1.6E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 302 375 4.32E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 128 203 5.1E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 215 296 2.2E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 128 209 2.2E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 43 122 1.5E-4 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c01470 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 302 383 2.4E-10 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 215 290 4.32E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 302 394 5.6E-23 T 11-10-2018 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 128 214 1.8E-23 T 11-10-2018 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 33 127 1.1E-15 T 11-10-2018 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Gene3D G3DSA:2.60.40.1080 215 301 1.6E-23 T 11-10-2018 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 129 201 9.8E-12 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 216 288 9.8E-12 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 Pfam PF02368 Bacterial Ig-like domain (group 2) 303 373 1.6E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 302 375 4.32E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SUPERFAMILY SSF49373 128 203 5.1E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 215 296 2.2E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 128 209 2.2E-11 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 43 122 1.5E-4 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c35030 4940a1104f5faf73c81a1a62b9c9eb6c 602 SMART SM00635 302 383 2.4E-10 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 Gene3D G3DSA:3.10.580.10 308 467 1.1E-21 T 11-10-2018 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 85 94 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 29 281 1.2E-74 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 Pfam PF01226 Formate/nitrite transporter 17 277 3.8E-70 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 Gene3D G3DSA:1.20.1080.10 4 270 1.3E-86 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 170 180 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 SUPERFAMILY SSF54631 292 464 1.62E-21 T 11-10-2018 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 16 281 1.1E-113 T 11-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 SMART SM00116 418 465 11.0 T 11-10-2018 IPR000644 CBS domain VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 SMART SM00116 320 368 0.017 T 11-10-2018 IPR000644 CBS domain VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 Pfam PF00571 CBS domain 313 364 6.8E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c37320 6796244ab9d3124c9378e3ae3b56b734 483 Pfam PF00571 CBS domain 382 464 0.0013 T 11-10-2018 IPR000644 CBS domain VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 5 203 5.2E-50 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 190 1.5E-24 T 11-10-2018 VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 Gene3D G3DSA:3.40.50.1000 6 216 5.1E-55 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 189 1.7E-26 T 11-10-2018 VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 SUPERFAMILY SSF56784 4 209 3.15E-27 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c31830 c93e2f9f9ddef0e5e522519bdeb3f9b2 219 Gene3D G3DSA:1.20.1440.100 17 90 5.1E-55 T 11-10-2018 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 Pfam PF13936 Helix-turn-helix domain 151 182 4.2E-7 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 SMART SM00857 3 140 1.8E-38 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 Gene3D G3DSA:3.40.50.1390 1 123 8.4E-36 T 11-10-2018 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 Gene3D G3DSA:1.10.10.60 139 184 1.0E-6 T 11-10-2018 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 SUPERFAMILY SSF53041 1 140 3.4E-36 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 VV93_v1c19720 c4ba3740a3c3b17709f17eddc6346023 184 Pfam PF00239 Resolvase, N terminal domain 4 140 1.3E-33 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 SUPERFAMILY SSF47616 72 204 1.28E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 SUPERFAMILY SSF52833 1 88 2.77E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 5.7E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 Gene3D G3DSA:3.40.30.10 1 77 5.2E-23 T 11-10-2018 VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 199 2.6E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal VV93_v1c39430 976d2665549f41e745ea8be18c3d7dc0 205 Gene3D G3DSA:1.20.1050.10 83 199 1.6E-30 T 11-10-2018 VV93_v1c39630 fe52300adc65ca927b76c077d1390724 331 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 328 5.1E-89 T 11-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 VV93_v1c39630 fe52300adc65ca927b76c077d1390724 331 SUPERFAMILY SSF51556 5 328 7.36E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c39630 fe52300adc65ca927b76c077d1390724 331 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.69 T 11-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 VV93_v1c39630 fe52300adc65ca927b76c077d1390724 331 Pfam PF00962 Adenosine/AMP deaminase 6 327 6.2E-71 T 11-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 VV93_v1c39630 fe52300adc65ca927b76c077d1390724 331 Gene3D G3DSA:3.20.20.140 3 331 1.6E-104 T 11-10-2018 VV93_v1c19470 62cb69740aeb69fe773c74dee1f622b0 243 Pfam PF11859 Protein of unknown function (DUF3379) 1 239 5.2E-84 T 11-10-2018 IPR021806 Protein of unknown function DUF3379 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 251 308 2.9E-20 T 11-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Gene3D G3DSA:3.30.2350.10 1 248 4.7E-95 T 11-10-2018 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 218 1.4E-88 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Gene3D G3DSA:2.30.130.10 249 311 4.5E-21 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 SUPERFAMILY SSF55120 9 247 2.79E-83 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 308 18.986 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 179 2.0E-57 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 VV93_v1c24230 f56993dc49403c5add248028f758021b 314 SUPERFAMILY SSF88697 250 310 9.94E-15 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c24230 f56993dc49403c5add248028f758021b 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 180 247 2.0E-23 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 Gene3D G3DSA:3.40.47.10 246 389 5.6E-42 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 SMART SM00825 Beta-ketoacyl synthase 35 338 2.6E-7 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 SUPERFAMILY SSF53901 7 236 5.21E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 Gene3D G3DSA:3.40.47.10 2 242 1.5E-34 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 76 236 6.4E-21 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 244 344 5.6E-27 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VV93_v1c09910 01ef4768e2edbebe54c299ceec1af850 395 SUPERFAMILY SSF53901 210 391 3.03E-45 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Gene3D G3DSA:3.30.1490.20 142 211 2.3E-91 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Gene3D G3DSA:3.30.470.20 116 304 2.3E-91 T 11-10-2018 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Gene3D G3DSA:3.40.50.20 6 115 2.3E-91 T 11-10-2018 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Hamap MF_00162 Glutathione synthetase [gshB]. 1 325 99.051 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 SUPERFAMILY SSF56059 125 321 2.75E-43 T 11-10-2018 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 121 2.7E-21 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 SUPERFAMILY SSF52440 1 121 3.45E-24 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c30390 9e5ff56b0ec97bf68d4b77923ff636fd 346 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 126 306 3.2E-59 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SUPERFAMILY SSF58104 473 754 3.66E-75 T 11-10-2018 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Pfam PF13188 PAS domain 40 94 0.0077 T 11-10-2018 IPR000014 PAS domain VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Pfam PF13188 PAS domain 165 217 0.0047 T 11-10-2018 IPR000014 PAS domain VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SUPERFAMILY SSF55785 153 271 5.06E-6 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Gene3D G3DSA:1.10.287.950 452 754 3.7E-89 T 11-10-2018 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 565 721 7.3E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 527 556 1.6E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 604 631 1.6E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 681 710 1.6E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 633 662 1.6E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00283 506 753 1.9E-97 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00304 453 505 8.1E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00304 506 558 74.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Gene3D G3DSA:3.30.450.20 163 283 4.4E-34 T 11-10-2018 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Gene3D G3DSA:3.30.450.20 289 408 2.6E-33 T 11-10-2018 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Gene3D G3DSA:3.30.450.20 36 157 1.2E-30 T 11-10-2018 VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 Pfam PF13426 PAS domain 306 408 0.045 T 11-10-2018 IPR000014 PAS domain VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00091 292 361 6.7 T 11-10-2018 IPR000014 PAS domain VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00091 38 101 13.0 T 11-10-2018 IPR000014 PAS domain VV93_v1c45460 bf244fc0a260df0c4694b46f9255d800 807 SMART SM00091 165 232 2.2 T 11-10-2018 IPR000014 PAS domain VV93_v1c23790 e9e5e3a23801199aa57d916ad36405c7 448 SUPERFAMILY SSF52540 152 436 1.25E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23790 e9e5e3a23801199aa57d916ad36405c7 448 Gene3D G3DSA:3.40.50.300 148 358 4.8E-11 T 11-10-2018 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 SUPERFAMILY SSF52777 172 401 2.22E-89 T 11-10-2018 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Gene3D G3DSA:2.40.50.100 1 78 6.2E-22 T 11-10-2018 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 402 4.5E-186 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Gene3D G3DSA:4.10.320.10 102 152 2.0E-22 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Gene3D G3DSA:3.30.559.10 170 402 1.9E-96 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 172 400 2.6E-80 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Pfam PF02817 e3 binding domain 113 146 2.3E-12 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 SUPERFAMILY SSF47005 106 149 1.23E-11 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 Pfam PF00364 Biotin-requiring enzyme 4 76 1.0E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c09560 017fe796f8533c02ba628652a27d8e24 402 SUPERFAMILY SSF51230 1 96 5.5E-24 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c39500 814c93333308f28ce9edfe7b8b35fea0 110 Gene3D G3DSA:3.30.1360.20 15 110 1.7E-33 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VV93_v1c39500 814c93333308f28ce9edfe7b8b35fea0 110 SUPERFAMILY SSF55248 16 109 4.58E-34 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VV93_v1c39500 814c93333308f28ce9edfe7b8b35fea0 110 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 14 109 21.734 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VV93_v1c39500 814c93333308f28ce9edfe7b8b35fea0 110 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 17 108 2.2E-32 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 SUPERFAMILY SSF52540 5 262 4.9E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 SMART SM00382 326 524 1.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 SMART SM00382 34 241 1.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 275 1.1E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 527 555 0.0079 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Pfam PF00005 ABC transporter 26 191 1.8E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 SUPERFAMILY SSF52540 292 547 6.98E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Gene3D G3DSA:3.40.50.300 3 291 1.1E-78 T 11-10-2018 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Gene3D G3DSA:3.40.50.300 292 566 1.2E-75 T 11-10-2018 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 Pfam PF00005 ABC transporter 318 476 2.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c44920 9deee1b9b13b4dee0e7a2774496c6aa4 566 ProSitePatterns PS00211 ABC transporters family signature. 448 462 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 Pfam PF00005 ABC transporter 20 164 8.1E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 SUPERFAMILY SSF50331 263 342 3.53E-8 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 SMART SM00382 29 214 3.2E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 Gene3D G3DSA:3.40.50.300 1 240 5.1E-76 T 11-10-2018 VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 SUPERFAMILY SSF52540 5 242 1.5E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24570 c3b40247a30c6fb04001ba8ed2407831 342 Pfam PF08402 TOBE domain 276 342 2.0E-7 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 SUPERFAMILY SSF55729 1 338 9.21E-130 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 338 8.1E-140 T 11-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 Gene3D G3DSA:3.40.630.30 1 274 1.0E-112 T 11-10-2018 VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 2.1E-132 T 11-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 2.2E-130 T 11-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 VV93_v1c27810 cdd0ffdf8165f16d19c21c3411c07eb7 339 Gene3D G3DSA:2.40.40.20 275 339 5.0E-7 T 11-10-2018 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 PIRSF PIRSF001434 1 385 2.6E-130 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 4 383 8.1E-199 T 11-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 191 205 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 Gene3D G3DSA:3.90.1150.10 249 387 2.6E-50 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 382 1.6E-135 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 SUPERFAMILY SSF53383 9 383 6.19E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c27360 ceb2d3efa36459a750f6f6b208aa71aa 388 Gene3D G3DSA:3.40.640.10 3 248 2.1E-82 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 SUPERFAMILY SSF63411 281 469 4.0E-30 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 SUPERFAMILY SSF63411 519 721 1.67E-48 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Gene3D G3DSA:3.30.830.10 525 730 1.0E-47 T 11-10-2018 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Gene3D G3DSA:3.30.830.10 48 271 8.4E-67 T 11-10-2018 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Gene3D G3DSA:3.30.830.10 743 937 5.6E-35 T 11-10-2018 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Gene3D G3DSA:3.30.830.10 275 475 3.7E-32 T 11-10-2018 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 SUPERFAMILY SSF63411 738 942 2.07E-40 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 SUPERFAMILY SSF63411 50 259 1.5E-55 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Pfam PF05193 Peptidase M16 inactive domain 687 858 1.0E-19 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Pfam PF05193 Peptidase M16 inactive domain 220 394 8.4E-30 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Pfam PF00675 Insulinase (Peptidase family M16) 541 654 1.7E-16 T 11-10-2018 IPR011765 Peptidase M16, N-terminal VV93_v1c25060 c1ce142d706cc97ca3a8dda7d35ff3d7 952 Pfam PF00675 Insulinase (Peptidase family M16) 63 179 1.7E-17 T 11-10-2018 IPR011765 Peptidase M16, N-terminal VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Pfam PF00970 Oxidoreductase FAD-binding domain 202 266 9.7E-9 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.129 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 43 115 2.4E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 385 2.8E-16 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Gene3D G3DSA:3.10.20.30 34 125 8.7E-33 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 9.3E-228 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Gene3D G3DSA:3.40.50.80 275 393 4.2E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 SUPERFAMILY SSF52343 258 402 2.62E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 SUPERFAMILY SSF54292 36 124 6.56E-22 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 SUPERFAMILY SSF63380 105 272 1.7E-34 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 Gene3D G3DSA:2.40.30.10 126 264 2.7E-50 T 11-10-2018 VV93_v1c23030 8338632259edc8db2aa6e332d7bc94ea 407 PIRSF PIRSF000044 1 407 2.5E-217 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 419 43.009 T 11-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Gene3D G3DSA:3.10.290.10 329 421 8.5E-22 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 SUPERFAMILY SSF52374 7 326 3.74E-99 T 11-10-2018 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Gene3D G3DSA:3.40.50.620 4 225 1.2E-84 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 186 208 3.7E-30 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 3.7E-30 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 3.7E-30 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 219 231 3.7E-30 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 418 9.5E-119 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Pfam PF00579 tRNA synthetases class I (W and Y) 32 326 6.3E-83 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Pfam PF01479 S4 domain 359 388 9.8E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 SUPERFAMILY SSF55174 324 418 5.76E-14 T 11-10-2018 VV93_v1c42630 d7de587016797cbfe8680399b7817743 422 Gene3D G3DSA:1.10.240.10 226 328 3.2E-36 T 11-10-2018 VV93_v1c05050 d1a8296260fbd2c689f80b8f61ff8292 147 SUPERFAMILY SSF89095 1 146 1.73E-44 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 VV93_v1c05050 d1a8296260fbd2c689f80b8f61ff8292 147 Gene3D G3DSA:1.10.10.410 91 147 8.9E-20 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal VV93_v1c05050 d1a8296260fbd2c689f80b8f61ff8292 147 Pfam PF09424 Yqey-like protein 5 146 9.5E-58 T 11-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 VV93_v1c05050 d1a8296260fbd2c689f80b8f61ff8292 147 Gene3D G3DSA:1.10.1510.10 1 90 2.2E-28 T 11-10-2018 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 9.8E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 147 201 2.4E-13 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 SUPERFAMILY SSF46689 4 75 3.09E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.7E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.7E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 Gene3D G3DSA:1.10.10.60 4 61 3.6E-21 T 11-10-2018 VV93_v1c40880 0fa33adce99de1424aa663256d7a54ea 209 Gene3D G3DSA:1.10.357.10 63 204 3.3E-27 T 11-10-2018 VV93_v1c32470 12013c083083b1e323ee335628b6449f 218 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 12 214 42.826 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c32470 12013c083083b1e323ee335628b6449f 218 SUPERFAMILY SSF55821 10 213 2.11E-81 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VV93_v1c32470 12013c083083b1e323ee335628b6449f 218 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 14 210 2.0E-76 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c32470 12013c083083b1e323ee335628b6449f 218 Gene3D G3DSA:3.90.870.10 6 218 6.8E-88 T 11-10-2018 VV93_v1c32470 12013c083083b1e323ee335628b6449f 218 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 18 209 1.8E-78 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c16950 25fce657bb9fb53d45cf66dfd8b13fe3 122 SUPERFAMILY SSF54593 3 121 6.88E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c16950 25fce657bb9fb53d45cf66dfd8b13fe3 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 118 9.3E-7 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c16950 25fce657bb9fb53d45cf66dfd8b13fe3 122 Gene3D G3DSA:3.10.180.10 1 122 6.9E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 44 277 2.8E-51 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 SUPERFAMILY SSF50621 260 387 1.34E-32 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 223 237 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 5.9E-21 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 366 379 5.9E-21 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 5.9E-21 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 267 286 5.9E-21 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 185 198 5.9E-21 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 Gene3D G3DSA:3.20.20.10 42 279 3.9E-123 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 Gene3D G3DSA:2.40.37.10 30 381 3.9E-123 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 61 88 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 135 157 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 105 129 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 35 59 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 302 315 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 353 366 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 PRINTS PR01182 Ornithine decarboxylase signature 333 343 2.3E-20 T 11-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 278 366 6.5E-15 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 VV93_v1c44260 5f7ab966633a5029057687c5001298a2 399 SUPERFAMILY SSF51419 41 279 2.04E-59 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 SMART SM00267 270 445 1.1E-47 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 Pfam PF03924 CHASE domain 96 208 5.4E-13 T 11-10-2018 IPR006189 CHASE domain VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 SMART SM01079 34 210 1.3E-28 T 11-10-2018 IPR006189 CHASE domain VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 SUPERFAMILY SSF55073 286 442 4.24E-44 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 Gene3D G3DSA:3.30.70.270 277 445 8.6E-52 T 11-10-2018 VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 Pfam PF00990 Diguanylate cyclase, GGDEF domain 282 440 1.1E-43 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34380 336c0bf884fad2d09854f3ca266f28fb 446 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 280 441 2.4E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 SUPERFAMILY SSF46785 5 61 1.39E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 SUPERFAMILY SSF100950 75 234 1.67E-24 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 SMART SM01134 74 232 2.2E-42 T 11-10-2018 VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 SMART SM00420 6 58 3.6E-17 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 Gene3D G3DSA:1.10.10.10 1 59 6.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 Pfam PF00455 DeoR C terminal sensor domain 76 230 2.1E-39 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c44730 e1f01a2fdf68d1c1400abdda63322b1e 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 3.6E-16 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 SMART SM00965 93 141 1.9E-5 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 Pfam PF00263 Bacterial type II and III secretion system protein 347 524 7.4E-41 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 Pfam PF07655 Secretin N-terminal domain 145 243 4.6E-25 T 11-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 238 524 7.8E-91 T 11-10-2018 IPR013358 Pilus biogenesis, MshL VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 PRINTS PR00811 Bacterial general secretion pathway protein D signature 489 507 6.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 PRINTS PR00811 Bacterial general secretion pathway protein D signature 512 526 6.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 PRINTS PR00811 Bacterial general secretion pathway protein D signature 272 282 6.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 PRINTS PR00811 Bacterial general secretion pathway protein D signature 342 366 6.6E-18 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c26700 6d989d70288ece02e7a5dee47a90b8e5 548 Gene3D G3DSA:3.55.50.30 49 145 1.9E-9 T 11-10-2018 VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 SUPERFAMILY SSF141986 173 324 9.02E-39 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 Pfam PF02016 LD-carboxypeptidase 13 318 9.1E-72 T 11-10-2018 IPR003507 Peptidase family S66 VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 SUPERFAMILY SSF52317 1 158 1.14E-45 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 Gene3D G3DSA:3.40.50.10740 1 163 7.4E-61 T 11-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 PIRSF PIRSF028757 1 329 2.5E-87 T 11-10-2018 IPR003507 Peptidase family S66 VV93_v1c35310 46eb5e1d79abe22f15e0f015cb611411 330 Gene3D G3DSA:3.50.30.60 165 329 2.2E-46 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.2E-34 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SUPERFAMILY SSF81301 180 393 1.31E-59 T 11-10-2018 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 27 701 5.3E-268 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Gene3D G3DSA:3.10.20.30 382 456 3.0E-29 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Gene3D G3DSA:3.30.70.260 627 706 3.1E-12 T 11-10-2018 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Pfam PF02824 TGS domain 389 447 3.8E-19 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SUPERFAMILY SSF81271 376 448 1.64E-20 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SMART SM00471 41 153 2.6E-10 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Pfam PF13291 ACT domain 627 703 2.3E-13 T 11-10-2018 IPR002912 ACT domain VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SMART SM00954 235 345 2.7E-59 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Pfam PF13328 HD domain 28 175 4.2E-53 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SUPERFAMILY SSF55021 633 703 2.83E-6 T 11-10-2018 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Gene3D G3DSA:1.10.3210.10 3 190 6.8E-79 T 11-10-2018 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 SUPERFAMILY SSF109604 3 190 4.71E-74 T 11-10-2018 VV93_v1c02200 8f7fc84a3ae947dc0d05bc8b665c4ea1 706 Gene3D G3DSA:3.30.460.10 193 325 6.9E-47 T 11-10-2018 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Gene3D G3DSA:3.30.830.10 254 465 2.0E-7 T 11-10-2018 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Gene3D G3DSA:3.30.830.10 7 248 4.1E-58 T 11-10-2018 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 SUPERFAMILY SSF63411 503 718 5.4E-25 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 SUPERFAMILY SSF63411 26 237 6.29E-43 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Pfam PF05193 Peptidase M16 inactive domain 198 374 2.3E-13 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Pfam PF05193 Peptidase M16 inactive domain 669 847 2.0E-6 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 60 83 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Gene3D G3DSA:3.30.830.10 740 913 9.5E-13 T 11-10-2018 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Gene3D G3DSA:3.30.830.10 507 716 3.6E-13 T 11-10-2018 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 SUPERFAMILY SSF63411 758 908 2.62E-13 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c31110 dd3cc057adb28e9b0cece2256dc05da6 915 Pfam PF00675 Insulinase (Peptidase family M16) 48 160 1.9E-25 T 11-10-2018 IPR011765 Peptidase M16, N-terminal VV93_v1c05250 aceb12196e48e3b0aa5d5ba35e6d5071 149 Pfam PF06853 Protein of unknown function (DUF1249) 27 139 2.0E-38 T 11-10-2018 IPR009659 Protein of unknown function DUF1249 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF12838 4Fe-4S dicluster domain 634 700 8.5E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF46548 89 200 2.3E-17 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 PRINTS PR00419 Adrenodoxin reductase family signature 192 214 1.6E-16 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 PRINTS PR00419 Adrenodoxin reductase family signature 323 337 1.6E-16 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 PRINTS PR00419 Adrenodoxin reductase family signature 257 267 1.6E-16 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 PRINTS PR00419 Adrenodoxin reductase family signature 215 228 1.6E-16 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 716 769 7.8E-17 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF53706 711 1247 1.57E-203 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.30.70.20 614 703 8.0E-19 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 75 1.7E-11 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF51971 190 430 2.53E-62 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.40.50.740 778 1240 1.3E-178 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:2.20.25.90 715 770 3.6E-20 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.40.50.720 186 295 7.4E-20 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 1145 1162 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.40.228.10 851 1052 1.3E-178 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF50692 1250 1392 1.81E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 686 697 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 96 175 8.5E-18 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 191 488 1.5E-29 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:2.40.40.20 1272 1393 3.2E-42 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 720 1390 1.8E-246 T 11-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 720 737 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.50.50.60 296 431 4.6E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF01568 Molydopterin dinucleotide binding domain 1282 1386 4.0E-30 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Pfam PF00384 Molybdopterin oxidoreductase 773 1199 1.6E-88 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SMART SM00926 715 770 1.2E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF54862 566 706 9.49E-22 T 11-10-2018 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 SUPERFAMILY SSF54292 1 98 5.06E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c31850 f4d05724014a686d0b4964ad248d5b7c 1399 Gene3D G3DSA:3.10.20.740 1 123 1.4E-25 T 11-10-2018 VV93_v1c12460 9effa1a6e912e492fae10fe6ec62321e 288 Hamap MF_00188 Protease HtpX [htpX]. 1 288 25.464 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 VV93_v1c12460 9effa1a6e912e492fae10fe6ec62321e 288 Gene3D G3DSA:3.30.2010.10 68 161 4.0E-38 T 11-10-2018 VV93_v1c12460 9effa1a6e912e492fae10fe6ec62321e 288 Pfam PF01435 Peptidase family M48 78 287 9.6E-40 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VV93_v1c28400 d776d46c063259183c09fab216694503 483 SUPERFAMILY SSF48557 14 467 1.28E-143 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 VV93_v1c28400 d776d46c063259183c09fab216694503 483 Gene3D G3DSA:1.10.40.30 421 470 4.3E-29 T 11-10-2018 VV93_v1c28400 d776d46c063259183c09fab216694503 483 Gene3D G3DSA:1.20.200.10 153 420 2.2E-113 T 11-10-2018 VV93_v1c28400 d776d46c063259183c09fab216694503 483 ProSitePatterns PS00163 Fumarate lyases signature. 330 339 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VV93_v1c28400 d776d46c063259183c09fab216694503 483 Pfam PF10415 Fumarase C C-terminus 421 473 3.9E-17 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c28400 d776d46c063259183c09fab216694503 483 Gene3D G3DSA:1.10.275.10 16 152 9.4E-59 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal VV93_v1c28400 d776d46c063259183c09fab216694503 483 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 16 482 1.6E-254 T 11-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 VV93_v1c28400 d776d46c063259183c09fab216694503 483 Pfam PF00206 Lyase 23 355 5.9E-103 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal VV93_v1c28400 d776d46c063259183c09fab216694503 483 PRINTS PR00149 Fumarate lyase superfamily signature 193 211 4.6E-26 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c28400 d776d46c063259183c09fab216694503 483 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 4.6E-26 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c28400 d776d46c063259183c09fab216694503 483 PRINTS PR00149 Fumarate lyase superfamily signature 330 346 4.6E-26 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c28400 d776d46c063259183c09fab216694503 483 PRINTS PR00149 Fumarate lyase superfamily signature 284 311 4.6E-26 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 322 53.63 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 Gene3D G3DSA:3.20.20.70 4 245 6.1E-73 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 87 105 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 6 320 1.1E-162 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 Pfam PF01207 Dihydrouridine synthase (Dus) 9 316 5.6E-95 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 SUPERFAMILY SSF51395 6 319 8.06E-75 T 11-10-2018 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 PIRSF PIRSF006621 1 323 2.4E-76 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c27010 891771c5b5551c147d3e0cd9903e7ff7 326 Gene3D G3DSA:1.20.120.1460 249 325 1.4E-22 T 11-10-2018 VV93_v1c22420 7e67f38a60d6f9a08c3eee363c7ff0a6 281 Pfam PF13230 Glutamine amidotransferases class-II 1 256 4.5E-113 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 VV93_v1c22420 7e67f38a60d6f9a08c3eee363c7ff0a6 281 SUPERFAMILY SSF56235 2 253 1.12E-51 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c22420 7e67f38a60d6f9a08c3eee363c7ff0a6 281 Gene3D G3DSA:3.60.20.10 1 258 9.7E-100 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 62 6.6E-10 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 Gene3D G3DSA:3.40.50.620 1 179 1.0E-78 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 1.1E-99 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 281 9.4E-104 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 SUPERFAMILY SSF52374 1 281 3.75E-105 T 11-10-2018 VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 Gene3D G3DSA:3.30.1300.10 181 283 6.2E-27 T 11-10-2018 VV93_v1c24760 2b5e4453c878c7e42638551cd88fe835 301 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.592 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 84 95 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Gene3D G3DSA:3.30.1490.20 133 200 2.0E-78 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 331 32.424 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 273 301 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 PIRSF PIRSF039102 1 331 4.2E-78 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Gene3D G3DSA:3.40.50.20 18 327 2.0E-78 T 11-10-2018 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 329 1.4E-98 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Gene3D G3DSA:3.30.470.20 106 321 2.0E-78 T 11-10-2018 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Pfam PF07478 D-ala D-ala ligase C-terminus 127 327 3.0E-54 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 SUPERFAMILY SSF56059 117 328 1.73E-43 T 11-10-2018 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 Pfam PF01820 D-ala D-ala ligase N-terminus 4 107 4.4E-20 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c37750 5236bf0fb11de095c95e17c1dda33af8 331 SUPERFAMILY SSF52440 4 116 1.44E-25 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 4 214 5.6E-92 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PIRSF PIRSF002764 1 218 1.9E-83 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 Pfam PF03379 CcmB protein 1 215 4.1E-90 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 1.6E-69 T 11-10-2018 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 1.6E-69 T 11-10-2018 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 191 214 1.6E-69 T 11-10-2018 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 25 46 1.6E-69 T 11-10-2018 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 1.6E-69 T 11-10-2018 VV93_v1c21570 5032c7c6a06d0e93f7143146c76b6de8 218 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 154 173 1.6E-69 T 11-10-2018 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Gene3D G3DSA:3.60.20.10 21 560 0.0 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Pfam PF00310 Glutamine amidotransferases class-II 21 443 5.8E-186 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Pfam PF04898 Glutamate synthase central domain 472 756 2.0E-115 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Pfam PF01493 GXGXG motif 1267 1452 4.1E-84 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Gene3D G3DSA:3.20.20.70 448 815 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 SUPERFAMILY SSF56235 21 446 1.26E-151 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Gene3D G3DSA:3.20.20.70 498 1204 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Gene3D G3DSA:2.160.20.60 1239 1510 3.5E-109 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 Pfam PF01645 Conserved region in glutamate synthase 817 1187 9.9E-152 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 SUPERFAMILY SSF51395 461 1220 3.66E-270 T 11-10-2018 VV93_v1c05800 170a57c5d66e256632b7fef1ed92eed8 1512 SUPERFAMILY SSF69336 1235 1498 4.05E-95 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 VV93_v1c02950 96cf2b5f0ee2293bbabc3399f559be5b 379 Gene3D G3DSA:3.30.470.20 107 374 1.0E-26 T 11-10-2018 VV93_v1c02950 96cf2b5f0ee2293bbabc3399f559be5b 379 Pfam PF13535 ATP-grasp domain 132 265 9.0E-7 T 11-10-2018 VV93_v1c02950 96cf2b5f0ee2293bbabc3399f559be5b 379 SUPERFAMILY SSF56059 132 297 1.77E-17 T 11-10-2018 VV93_v1c02950 96cf2b5f0ee2293bbabc3399f559be5b 379 Gene3D G3DSA:3.40.50.20 2 106 4.6E-6 T 11-10-2018 VV93_v1c23090 326e136dd227e1d05ec484dbb779a794 103 Gene3D G3DSA:3.30.300.90 1 89 5.2E-35 T 11-10-2018 VV93_v1c23090 326e136dd227e1d05ec484dbb779a794 103 SUPERFAMILY SSF82657 1 88 1.83E-32 T 11-10-2018 IPR036065 BolA-like superfamily VV93_v1c23090 326e136dd227e1d05ec484dbb779a794 103 Pfam PF01722 BolA-like protein 10 83 3.1E-31 T 11-10-2018 IPR002634 BolA protein VV93_v1c23090 326e136dd227e1d05ec484dbb779a794 103 PIRSF PIRSF003113 1 99 3.0E-38 T 11-10-2018 IPR002634 BolA protein VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 PIRSF PIRSF000137 1 536 3.8E-148 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 SUPERFAMILY SSF51905 1 534 7.77E-89 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 3 553 64.845 T 11-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Pfam PF05199 GMC oxidoreductase 388 526 1.9E-42 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Gene3D G3DSA:4.10.450.10 38 198 3.8E-179 T 11-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Pfam PF00732 GMC oxidoreductase 5 297 1.0E-91 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Gene3D G3DSA:3.30.410.40 151 471 3.8E-179 T 11-10-2018 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 TIGRFAM TIGR01810 betA: choline dehydrogenase 6 536 4.5E-239 T 11-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 SUPERFAMILY SSF54373 292 474 2.16E-63 T 11-10-2018 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Gene3D G3DSA:1.10.1220.110 97 150 3.8E-179 T 11-10-2018 VV93_v1c35150 21c61ce660a80596c0ff1e746c51e4de 560 Gene3D G3DSA:3.50.50.60 4 530 3.8E-179 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 Gene3D G3DSA:3.40.50.880 254 443 5.9E-19 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 Gene3D G3DSA:3.40.50.300 4 247 8.0E-55 T 11-10-2018 VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 SUPERFAMILY SSF52540 7 241 8.86E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 SUPERFAMILY SSF52317 254 447 3.11E-40 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 233 5.8E-22 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 254 438 1.8E-57 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 480 6.5E-153 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 VV93_v1c38310 9912dc08a7407756eb32ac4229f454df 483 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 483 196.363 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 SMART SM00100 23 142 9.9E-12 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 SUPERFAMILY SSF46785 159 232 3.14E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 Pfam PF13545 Crp-like helix-turn-helix domain 162 230 5.9E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 Pfam PF00027 Cyclic nucleotide-binding domain 42 130 8.3E-17 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 SUPERFAMILY SSF51206 17 157 2.23E-29 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 SMART SM00419 176 224 1.3E-9 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 Gene3D G3DSA:1.10.10.10 157 231 1.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30780 de2d0fd7a61fc56ad16d30739e7abac0 260 Gene3D G3DSA:2.60.120.10 6 156 3.3E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Gene3D G3DSA:2.40.160.50 263 571 9.8E-99 T 11-10-2018 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Gene3D G3DSA:3.10.20.310 186 262 6.7E-20 T 11-10-2018 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Gene3D G3DSA:3.10.20.310 98 185 1.5E-30 T 11-10-2018 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Gene3D G3DSA:3.10.20.310 22 97 9.8E-20 T 11-10-2018 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Pfam PF17243 POTRA domain TamA domain 1 26 95 7.9E-18 T 11-10-2018 IPR035243 TamA, POTRA domain 1 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Pfam PF07244 Surface antigen variable number repeat 106 178 4.7E-5 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c03950 33eb552f9136952c6c93ada77091b861 571 Pfam PF01103 Surface antigen 275 568 2.0E-29 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VV93_v1c12150 775e880d27e5b25d5775057e9a369c3b 226 SUPERFAMILY SSF52540 6 223 2.93E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12150 775e880d27e5b25d5775057e9a369c3b 226 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 2.5E-85 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VV93_v1c12150 775e880d27e5b25d5775057e9a369c3b 226 Gene3D G3DSA:3.40.50.300 1 226 1.7E-83 T 11-10-2018 VV93_v1c12150 775e880d27e5b25d5775057e9a369c3b 226 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.6 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VV93_v1c12150 775e880d27e5b25d5775057e9a369c3b 226 Pfam PF02224 Cytidylate kinase 8 221 1.7E-78 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 241 1.1E-124 T 11-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 SUPERFAMILY SSF51735 3 240 1.64E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 240 1.3E-57 T 11-10-2018 VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 Gene3D G3DSA:3.40.50.720 3 240 7.3E-73 T 11-10-2018 VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09890 278611f15c3eaa41853f68d1d74f6844 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.7E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 SUPERFAMILY SSF48179 191 287 3.06E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 SUPERFAMILY SSF52413 283 387 1.7E-28 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 PIRSF PIRSF500134 338 388 0.014 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 PIRSF PIRSF500134 1 343 1.1E-117 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 4.2E-28 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 SUPERFAMILY SSF51735 1 194 3.32E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Gene3D G3DSA:3.40.50.720 1 193 2.1E-55 T 11-10-2018 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Gene3D G3DSA:3.40.50.720 222 388 3.0E-68 T 11-10-2018 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 373 1.7E-8 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 SMART SM00984 300 387 6.6E-14 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Gene3D G3DSA:1.20.5.100 194 220 8.8E-20 T 11-10-2018 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 PIRSF PIRSF000124 1 388 9.3E-136 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 170 4.8E-32 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 VV93_v1c03390 c68b3f298759975c262ba9826a3e58e2 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 378 6.7E-113 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.30.170 245 318 1.6E-25 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:1.10.287.470 161 175 6.2E-10 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 212 390 7.0E-32 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.50.100 195 244 1.6E-25 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.30.170 112 125 6.2E-10 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.420.20 324 413 2.3E-23 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.420.20 100 111 6.2E-10 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 SUPERFAMILY SSF111369 130 322 6.15E-15 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.50.100 126 160 6.2E-10 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.50.320 414 486 3.6E-21 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Gene3D G3DSA:2.40.50.320 493 564 9.2E-13 T 11-10-2018 VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 109 317 1.9E-76 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Pfam PF11604 Copper binding periplasmic protein CusF 417 483 1.3E-24 T 11-10-2018 IPR021647 Copper binding periplasmic protein CusF VV93_v1c42350 cf5d6e57b56c27bdbf4b948f6dfc22b1 567 Pfam PF11604 Copper binding periplasmic protein CusF 497 562 8.4E-16 T 11-10-2018 IPR021647 Copper binding periplasmic protein CusF VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 226 245 1.0E-7 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 293 308 1.0E-7 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 138 152 1.0E-7 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 SUPERFAMILY SSF53738 203 311 5.1E-21 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Gene3D G3DSA:3.40.120.10 323 443 2.2E-31 T 11-10-2018 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 41 180 4.8E-43 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Gene3D G3DSA:3.40.120.10 203 322 1.7E-20 T 11-10-2018 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 321 438 1.0E-17 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 SUPERFAMILY SSF53738 30 218 7.85E-45 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 139 148 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Gene3D G3DSA:3.40.120.10 32 184 4.9E-48 T 11-10-2018 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 SUPERFAMILY SSF53738 301 445 6.67E-32 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 487 535 5.8E-8 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 205 309 1.6E-23 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 SUPERFAMILY SSF55957 434 537 3.79E-14 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c40560 34ed889de00fbc672757d03d07e556e7 568 Gene3D G3DSA:3.30.310.50 448 550 1.6E-8 T 11-10-2018 VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 SUPERFAMILY SSF52172 6 159 1.71E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 SMART SM00448 8 120 7.0E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 SUPERFAMILY SSF55073 156 316 1.1E-47 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 Pfam PF00072 Response regulator receiver domain 10 117 7.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 Gene3D G3DSA:3.40.50.2300 3 139 1.2E-34 T 11-10-2018 VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 147 315 4.1E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 SMART SM00267 140 316 5.2E-59 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 Gene3D G3DSA:3.30.70.270 140 315 6.8E-53 T 11-10-2018 VV93_v1c38240 6b7ff87b73c4fa66eb0d427725dd5bb9 319 Pfam PF00990 Diguanylate cyclase, GGDEF domain 151 312 2.4E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 SUPERFAMILY SSF103263 4 354 3.53E-151 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 Pfam PF01264 Chorismate synthase 10 345 2.1E-145 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 Gene3D G3DSA:3.60.150.10 1 361 4.0E-162 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 PIRSF PIRSF001456 3 360 8.5E-145 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 9.2E-145 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c21370 ee32bd45e834d7e4596fc6e6a1483a4c 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 38.041 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 SUPERFAMILY SSF52733 3 341 1.18E-114 T 11-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 1 342 36.515 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 Gene3D G3DSA:1.10.1610.10 13 340 7.0E-121 T 11-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 Pfam PF02277 Phosphoribosyltransferase 2 340 5.9E-128 T 11-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3 340 2.1E-128 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 VV93_v1c13840 ead6cfe02db8cdb42b2dd3eb44cdc754 342 Gene3D G3DSA:3.40.50.10210 51 323 7.0E-121 T 11-10-2018 VV93_v1c14550 a7d75c8f4d28c6a1f4f8bc8d10528eb3 90 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VV93_v1c14550 a7d75c8f4d28c6a1f4f8bc8d10528eb3 90 Gene3D G3DSA:3.30.70.100 1 90 6.8E-30 T 11-10-2018 VV93_v1c14550 a7d75c8f4d28c6a1f4f8bc8d10528eb3 90 Pfam PF00708 Acylphosphatase 7 89 2.1E-24 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VV93_v1c14550 a7d75c8f4d28c6a1f4f8bc8d10528eb3 90 SUPERFAMILY SSF54975 5 89 3.49E-27 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VV93_v1c14550 a7d75c8f4d28c6a1f4f8bc8d10528eb3 90 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 SUPERFAMILY SSF52794 119 220 3.14E-36 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 225 564 5.2E-140 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 4.9E-15 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 122 204 6.9E-16 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 Gene3D G3DSA:3.40.50.2300 1 103 1.1E-25 T 11-10-2018 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 SUPERFAMILY SSF52794 2 102 6.45E-29 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 121 204 6.0E-36 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 Pfam PF02378 Phosphotransferase system, EIIC 245 508 2.0E-14 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c37010 9d1f2a55cb90ddf5ff984ca87236d966 575 Gene3D G3DSA:3.40.50.2300 109 220 2.1E-40 T 11-10-2018 VV93_v1c16930 2cdcedbba09532d4d2d3af6d35abaaf3 316 Pfam PF11185 Protein of unknown function (DUF2971) 172 249 4.7E-13 T 11-10-2018 IPR021352 Protein of unknown function DUF2971 VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 SMART SM00487 22 224 1.3E-56 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 Gene3D G3DSA:3.40.50.300 1 211 2.5E-71 T 11-10-2018 VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 Pfam PF00271 Helicase conserved C-terminal domain 234 341 4.8E-32 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 Gene3D G3DSA:3.40.50.300 216 408 5.2E-52 T 11-10-2018 VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 SMART SM00490 260 341 2.8E-31 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 3 408 50.046 T 11-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 SUPERFAMILY SSF52540 76 358 2.02E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06000 331df90a2346f2d990575ba9eaff93df 408 Pfam PF00270 DEAD/DEAH box helicase 27 195 8.7E-46 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c36820 c4d07de41e64b858c0723d405ab96138 368 Pfam PF13776 Domain of unknown function (DUF4172) 2 82 9.7E-28 T 11-10-2018 IPR025230 Domain of unknown function DUF4172 VV93_v1c36820 c4d07de41e64b858c0723d405ab96138 368 SUPERFAMILY SSF140931 94 293 6.02E-38 T 11-10-2018 IPR036597 Fido-like domain superfamily VV93_v1c36820 c4d07de41e64b858c0723d405ab96138 368 Gene3D G3DSA:1.10.3290.10 37 291 5.8E-45 T 11-10-2018 IPR036597 Fido-like domain superfamily VV93_v1c36820 c4d07de41e64b858c0723d405ab96138 368 Pfam PF02661 Fic/DOC family 111 223 2.6E-15 T 11-10-2018 IPR003812 Fido domain VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 SMART SM01358 39 292 6.9E-56 T 11-10-2018 IPR032255 Helical bimodular sensor domain VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 SMART SM00283 389 651 1.3E-77 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 434 618 9.9E-47 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 SUPERFAMILY SSF58104 343 652 1.31E-76 T 11-10-2018 VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 SMART SM00304 321 375 3.8E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c09280 b1439bb291de4bc279bb9f9abd13778f 652 Gene3D G3DSA:1.10.287.950 321 652 1.5E-73 T 11-10-2018 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 SUPERFAMILY SSF55120 7 339 4.6E-97 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 9 171 6.3E-42 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 186 337 4.5E-20 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 78 91 - T 11-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 6 342 29.159 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 9 225 1.6E-54 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 Gene3D G3DSA:3.30.2340.10 170 302 1.7E-105 T 11-10-2018 VV93_v1c25230 ea7f0e00fe6efa787680d4bd9eb0229c 347 Gene3D G3DSA:3.30.2350.20 18 337 1.7E-105 T 11-10-2018 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.0E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.0E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 SUPERFAMILY SSF55811 1 128 3.79E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 Pfam PF00293 NUDIX domain 7 126 3.8E-22 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 Gene3D G3DSA:3.90.79.10 1 132 1.1E-42 T 11-10-2018 VV93_v1c05650 f957db08b5df5b36f30b25b128eca278 132 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 127 2.0E-43 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 430 1.0E-125 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 Pfam PF13520 Amino acid permease 9 414 2.4E-46 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 Hamap MF_02073 Putrescine transporter PotE [potE]. 8 435 34.638 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 4 431 6.8E-203 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 PIRSF PIRSF006060 1 432 1.9E-51 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c30710 1ffc79f4d64f12537ea0479a05d9ea10 436 Gene3D G3DSA:1.20.1740.10 1 435 1.0E-61 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Gene3D G3DSA:3.10.150.10 1 122 2.9E-42 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 1.7E-38 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Gene3D G3DSA:3.10.150.10 248 366 1.4E-38 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 SUPERFAMILY SSF55979 1 118 1.48E-29 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 243 5.9E-35 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 SUPERFAMILY SSF55979 245 366 7.85E-36 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 SUPERFAMILY SSF55979 126 244 3.23E-28 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 PIRSF PIRSF000804 1 366 1.5E-118 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 SMART SM00480 17 362 3.6E-146 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 5.9E-38 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 Gene3D G3DSA:3.10.150.10 124 247 6.0E-37 T 11-10-2018 VV93_v1c00020 738bd0703c240eb1dbc30eff50fc8240 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 2.4E-108 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 VV93_v1c44740 2d7089fb35f09f662de6e2c699cd4611 586 Pfam PF03611 PTS system sugar-specific permease component 15 415 8.3E-123 T 11-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 VV93_v1c44740 2d7089fb35f09f662de6e2c699cd4611 586 PIRSF PIRSF037343 1 582 9.8E-284 T 11-10-2018 IPR017180 Phosphotransferase system component IIBC, sugar-specific, predicted VV93_v1c44740 2d7089fb35f09f662de6e2c699cd4611 586 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 491 564 5.4E-12 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c44740 2d7089fb35f09f662de6e2c699cd4611 586 Gene3D G3DSA:3.40.50.2300 489 579 7.0E-18 T 11-10-2018 VV93_v1c44740 2d7089fb35f09f662de6e2c699cd4611 586 SUPERFAMILY SSF52794 490 580 2.88E-14 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c01950 80b1aaa526ea4140fc26196153cc6f47 309 TIGRFAM TIGR01713 typeII_sec_gspC: type II secretion system protein C 35 309 6.2E-81 T 11-10-2018 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 VV93_v1c01950 80b1aaa526ea4140fc26196153cc6f47 309 SUPERFAMILY SSF50156 213 308 3.06E-17 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c01950 80b1aaa526ea4140fc26196153cc6f47 309 Gene3D G3DSA:2.30.30.830 112 179 2.6E-28 T 11-10-2018 VV93_v1c01950 80b1aaa526ea4140fc26196153cc6f47 309 Pfam PF11356 Type II secretion system protein C 37 178 3.0E-41 T 11-10-2018 IPR024961 Type II secretion system protein C, N-terminal VV93_v1c01950 80b1aaa526ea4140fc26196153cc6f47 309 Gene3D G3DSA:2.30.42.10 206 309 1.7E-27 T 11-10-2018 VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 Gene3D G3DSA:3.90.1380.10 1 79 8.8E-31 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 85 368 1.7E-23 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 Gene3D G3DSA:3.40.50.1100 101 399 1.2E-137 T 11-10-2018 VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 SUPERFAMILY SSF53686 1 424 7.33E-132 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 Gene3D G3DSA:3.40.50.1100 83 392 1.2E-137 T 11-10-2018 VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 TIGRFAM TIGR00260 thrC: threonine synthase 53 391 4.3E-115 T 11-10-2018 IPR004450 Threonine synthase-like VV93_v1c05910 8100d32452f124378b9334b2130ed0e9 426 Pfam PF14821 Threonine synthase N terminus 8 78 5.1E-8 T 11-10-2018 IPR029144 Threonine synthase, N-terminal VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 SUPERFAMILY SSF54913 1 112 2.22E-47 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 PRINTS PR00340 P-II protein signature 52 75 5.7E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 PRINTS PR00340 P-II protein signature 23 41 5.7E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 PRINTS PR00340 P-II protein signature 83 103 5.7E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 PRINTS PR00340 P-II protein signature 2 17 5.7E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 PIRSF PIRSF039144 1 112 2.7E-58 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.4E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 SMART SM00938 4 105 8.5E-70 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c22570 27a1fc9fb352c40e15ac50e6e66361fb 112 Gene3D G3DSA:3.30.70.120 1 112 1.1E-48 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VV93_v1c36960 f23750b05e820ccc44e04c5ba174b0b0 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 2.1E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c36960 f23750b05e820ccc44e04c5ba174b0b0 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 2.1E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c36960 f23750b05e820ccc44e04c5ba174b0b0 241 SUPERFAMILY SSF46689 9 86 1.69E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c36960 f23750b05e820ccc44e04c5ba174b0b0 241 Gene3D G3DSA:1.10.357.10 1 201 8.2E-24 T 11-10-2018 VV93_v1c36960 f23750b05e820ccc44e04c5ba174b0b0 241 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 1.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c42730 1b0e865b93930e6564b3a977034dc6d1 166 Gene3D G3DSA:1.20.950.20 1 156 9.4E-7 T 11-10-2018 VV93_v1c42730 1b0e865b93930e6564b3a977034dc6d1 166 SUPERFAMILY SSF81342 4 166 3.22E-30 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VV93_v1c42730 1b0e865b93930e6564b3a977034dc6d1 166 Pfam PF01292 Prokaryotic cytochrome b561 6 166 2.9E-21 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 79 8.2E-19 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 SUPERFAMILY SSF55315 3 77 2.35E-19 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 243 1.4E-85 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 SUPERFAMILY SSF75217 69 244 6.15E-48 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 244 43.55 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 Gene3D G3DSA:3.30.1330.30 1 77 2.3E-26 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 Gene3D G3DSA:3.40.1280.10 78 244 2.2E-63 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 Pfam PF00588 SpoU rRNA Methylase family 97 237 1.0E-38 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c27880 d436216a85a44f80a113ac22181402c4 247 SMART SM00967 5 81 4.6E-19 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Gene3D G3DSA:1.20.1330.10 44 327 1.1E-74 T 11-10-2018 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Pfam PF07196 Flagellin hook IN motif 195 249 2.2E-9 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Gene3D G3DSA:1.10.8.410 328 376 2.1E-20 T 11-10-2018 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 1.4E-25 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 6.9E-43 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 SUPERFAMILY SSF64518 1 376 1.44E-97 T 11-10-2018 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 Gene3D G3DSA:3.30.70.2120 174 275 1.1E-74 T 11-10-2018 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 PRINTS PR00207 Flagellin signature 37 54 1.9E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 PRINTS PR00207 Flagellin signature 111 134 1.9E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c09000 8e9d3be736b69f769e7f161856cfa00d 377 PRINTS PR00207 Flagellin signature 76 95 1.9E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 503 6.4E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 Gene3D G3DSA:3.30.450.20 33 186 2.2E-30 T 11-10-2018 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 SMART SM00283 277 538 1.5E-69 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 SUPERFAMILY SSF58104 243 539 5.49E-70 T 11-10-2018 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 Gene3D G3DSA:1.10.287.950 218 540 7.0E-65 T 11-10-2018 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 SMART SM01049 30 124 2.3E-18 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 Pfam PF17200 Single Cache domain 2 36 185 4.9E-33 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 6.4E-26 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 6.4E-26 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 204 6.4E-26 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c25930 5c7a3c4196d00776083ce7f996bbd4bd 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 6.4E-26 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 Gene3D G3DSA:3.40.190.10 217 525 8.0E-143 T 11-10-2018 VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 454 7.5E-81 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 PIRSF PIRSF002741 1 537 3.3E-88 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 SUPERFAMILY SSF53850 35 534 5.79E-128 T 11-10-2018 VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 Gene3D G3DSA:3.90.76.10 44 216 8.0E-143 T 11-10-2018 VV93_v1c13010 602e4074347795b4c3e6939ad5b25f99 538 Gene3D G3DSA:3.10.105.10 296 513 8.0E-143 T 11-10-2018 VV93_v1c29100 45676b3ebb959eb82e84f4049e047f07 304 TIGRFAM TIGR00688 rarD: protein RarD 11 264 2.4E-87 T 11-10-2018 IPR004626 RarD protein GO:0005887 VV93_v1c29100 45676b3ebb959eb82e84f4049e047f07 304 SUPERFAMILY SSF103481 192 291 3.4E-8 T 11-10-2018 VV93_v1c29100 45676b3ebb959eb82e84f4049e047f07 304 Pfam PF00892 EamA-like transporter family 12 145 9.7E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c29100 45676b3ebb959eb82e84f4049e047f07 304 Pfam PF00892 EamA-like transporter family 155 287 1.6E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c29100 45676b3ebb959eb82e84f4049e047f07 304 SUPERFAMILY SSF103481 50 146 4.84E-13 T 11-10-2018 VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 SMART SM00382 33 230 1.1E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 Gene3D G3DSA:3.40.50.300 1 317 7.7E-95 T 11-10-2018 VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 Pfam PF00005 ABC transporter 24 180 5.8E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 9.6E-27 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 SUPERFAMILY SSF52540 4 251 7.73E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c31360 a2be917e667b7aa5b5ef1102daa8a97d 317 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 6.9E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c17550 ec21e42d5f4b14ffe2af43467e89294c 153 Pfam PF02566 OsmC-like protein 55 152 6.3E-16 T 11-10-2018 IPR003718 OsmC/Ohr family VV93_v1c17550 ec21e42d5f4b14ffe2af43467e89294c 153 Gene3D G3DSA:3.30.300.20 1 153 1.3E-51 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c17550 ec21e42d5f4b14ffe2af43467e89294c 153 SUPERFAMILY SSF82784 1 152 3.8E-50 T 11-10-2018 IPR036102 OsmC/Ohr superfamily VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Gene3D G3DSA:1.10.260.40 3 59 1.0E-24 T 11-10-2018 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 334 62.684 T 11-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.0E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.0E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Gene3D G3DSA:3.40.50.2300 69 322 7.7E-92 T 11-10-2018 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Pfam PF13377 Periplasmic binding protein-like domain 170 330 4.7E-45 T 11-10-2018 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 SUPERFAMILY SSF47413 1 59 8.61E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 SUPERFAMILY SSF53822 60 331 1.88E-95 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Gene3D G3DSA:3.40.50.2300 161 323 7.7E-92 T 11-10-2018 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 SMART SM00354 1 71 2.9E-38 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c20170 e17eb14391d609dd55ca3d207e2cbc43 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.8E-21 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 Pfam PF17206 SeqA protein N-terminal domain 1 36 1.3E-24 T 11-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 PIRSF PIRSF019401 1 69 1.3E-18 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 PIRSF PIRSF019401 63 177 9.4E-35 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 Pfam PF03925 SeqA protein C-terminal domain 68 175 3.1E-46 T 11-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 177 41.617 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 SUPERFAMILY SSF47598 1 34 5.78E-14 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 Gene3D G3DSA:1.10.1220.10 1 40 1.6E-24 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 SUPERFAMILY SSF82808 62 176 2.48E-49 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VV93_v1c09420 a02260ed3ecd7986c302934f53fd8119 177 Gene3D G3DSA:1.20.1380.10 62 177 3.2E-47 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Gene3D G3DSA:2.40.50.140 1 65 1.7E-27 T 11-10-2018 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Gene3D G3DSA:1.10.8.10 157 204 1.2E-23 T 11-10-2018 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 SUPERFAMILY SSF50249 2 63 9.14E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Pfam PF01330 RuvA N terminal domain 2 62 1.3E-20 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 SUPERFAMILY SSF46929 158 203 1.96E-12 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 5.0E-15 T 11-10-2018 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 1.3E-65 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Gene3D G3DSA:1.10.150.20 67 143 9.6E-26 T 11-10-2018 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 SMART SM00278 108 127 0.071 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 SMART SM00278 73 92 180.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 31.8 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 SUPERFAMILY SSF47781 66 137 7.23E-20 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c19950 a56582d243e739fad42fb11cc85c7dae 204 Pfam PF07499 RuvA, C-terminal domain 160 203 5.0E-17 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 2.3E-72 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 SUPERFAMILY SSF50615 10 94 3.73E-26 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.539 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Gene3D G3DSA:3.40.50.300 94 382 5.0E-130 T 11-10-2018 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Gene3D G3DSA:1.20.150.20 383 513 1.6E-47 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.1E-43 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 5.5E-14 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 SUPERFAMILY SSF47917 383 511 6.02E-45 T 11-10-2018 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 Gene3D G3DSA:2.40.30.20 1 93 4.3E-30 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 1.7E-250 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29750 2f1da5cb47d2bb0b69897fb1bd444af8 513 SUPERFAMILY SSF52540 96 381 1.16E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37740 c7d200863cb9e98fbe5eea44bb28433d 191 SUPERFAMILY SSF110997 101 164 9.15E-8 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c37740 c7d200863cb9e98fbe5eea44bb28433d 191 Gene3D G3DSA:3.30.70.1070 88 182 3.5E-20 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c37740 c7d200863cb9e98fbe5eea44bb28433d 191 Pfam PF05036 Sporulation related domain 101 173 3.0E-12 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Gene3D G3DSA:2.40.30.10 5 109 9.3E-24 T 11-10-2018 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 SUPERFAMILY SSF52343 119 250 6.68E-32 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 271 337 5.6E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 296 304 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Pfam PF00970 Oxidoreductase FAD-binding domain 18 109 1.6E-14 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 8.4E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 41 53 8.4E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 125 144 8.4E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Gene3D G3DSA:3.40.50.80 119 255 4.2E-28 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Gene3D G3DSA:3.10.20.30 260 347 1.6E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 SUPERFAMILY SSF54292 238 346 5.11E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 SUPERFAMILY SSF63380 4 110 3.57E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c13180 d7c752a4b5479a2287c7da3baa47a720 347 Pfam PF00175 Oxidoreductase NAD-binding domain 126 229 4.5E-11 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c40690 431c4b3597891518b12885a09d7e3c1e 308 SUPERFAMILY SSF103481 63 161 5.89E-9 T 11-10-2018 VV93_v1c40690 431c4b3597891518b12885a09d7e3c1e 308 Pfam PF00892 EamA-like transporter family 25 160 3.5E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c40690 431c4b3597891518b12885a09d7e3c1e 308 Pfam PF00892 EamA-like transporter family 171 300 4.0E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c40690 431c4b3597891518b12885a09d7e3c1e 308 SUPERFAMILY SSF103481 207 303 1.57E-9 T 11-10-2018 VV93_v1c14050 b448bb5817dfb1b68fa89b781c2c6419 378 Gene3D G3DSA:2.60.120.10 68 167 5.4E-12 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c14050 b448bb5817dfb1b68fa89b781c2c6419 378 Pfam PF04209 homogentisate 1,2-dioxygenase 88 375 1.1E-20 T 11-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 VV93_v1c14050 b448bb5817dfb1b68fa89b781c2c6419 378 SUPERFAMILY SSF51182 57 375 9.71E-89 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 Gene3D G3DSA:1.10.287.470 90 212 2.2E-38 T 11-10-2018 VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 Gene3D G3DSA:2.40.50.100 57 247 2.2E-38 T 11-10-2018 VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 Gene3D G3DSA:2.40.30.170 248 289 2.2E-38 T 11-10-2018 VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 286 5.5E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 SUPERFAMILY SSF111369 122 284 1.7E-8 T 11-10-2018 VV93_v1c02410 8fb76651bf10c34f6e255d727dcbaaf5 368 SUPERFAMILY SSF111369 56 130 1.1E-9 T 11-10-2018 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 Gene3D G3DSA:3.40.50.620 1 215 3.7E-94 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 Gene3D G3DSA:2.40.30.10 287 372 2.7E-33 T 11-10-2018 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 365 3.9E-152 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 SUPERFAMILY SSF52402 5 247 3.09E-56 T 11-10-2018 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 Pfam PF03054 tRNA methyl transferase 7 365 3.4E-143 T 11-10-2018 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 366 40.093 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VV93_v1c12570 21ea8d9a2ef008ae6c42b648466e558f 374 Gene3D G3DSA:2.30.30.280 216 286 1.2E-25 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 SUPERFAMILY SSF46689 5 79 2.78E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 Pfam PF01380 SIS domain 124 250 6.0E-15 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 SUPERFAMILY SSF53697 95 264 2.04E-35 T 11-10-2018 VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 Gene3D G3DSA:1.10.10.10 3 82 4.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 Gene3D G3DSA:3.40.50.10490 94 273 3.4E-37 T 11-10-2018 VV93_v1c40830 62fe37401601c4cbd096ae4fd1236964 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 78 1.1E-15 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 Gene3D G3DSA:3.40.50.150 126 401 2.5E-75 T 11-10-2018 VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 Pfam PF01189 16S rRNA methyltransferase RsmB/F 219 384 1.6E-43 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 384 401 5.4E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 297 309 5.4E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 347 363 5.4E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 230 240 5.4E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 201 215 5.4E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c45250 2445d8b77faa6ff06c3812d25d57f274 404 SUPERFAMILY SSF53335 117 402 7.86E-66 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 214 2.1E-39 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 SUPERFAMILY SSF48179 610 704 2.55E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 1 703 54.147 T 11-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 616 690 4.2E-5 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 494 587 7.4E-24 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 SUPERFAMILY SSF51735 313 491 3.1E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Gene3D G3DSA:3.40.50.720 312 496 8.8E-59 T 11-10-2018 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Gene3D G3DSA:1.10.1040.50 497 698 9.7E-71 T 11-10-2018 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 491 516 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 SUPERFAMILY SSF48179 494 593 2.64E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 313 491 7.2E-55 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 SUPERFAMILY SSF52096 3 302 6.9E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 Gene3D G3DSA:3.90.226.10 1 309 1.6E-97 T 11-10-2018 VV93_v1c21430 e9c03cf4eca84765523a39f67f22c6b7 705 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 6 703 0.0 T 11-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 SUPERFAMILY SSF63380 1 93 1.7E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 5.2E-77 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 Pfam PF00677 Lumazine binding domain 3 87 1.3E-20 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 Pfam PF00677 Lumazine binding domain 100 185 1.8E-21 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 PIRSF PIRSF000498 1 204 1.2E-67 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 Gene3D G3DSA:2.40.30.20 1 89 5.1E-30 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 Gene3D G3DSA:2.40.30.20 94 191 9.3E-28 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c16210 3c0a44541b31f957e3a55e10961ad6da 206 SUPERFAMILY SSF63380 93 198 8.42E-31 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 Gene3D G3DSA:3.30.300.160 1 78 2.2E-39 T 11-10-2018 VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 SUPERFAMILY SSF52540 106 496 1.4E-108 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 SMART SM00382 252 375 2.9E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 SUPERFAMILY SSF160246 12 78 9.68E-17 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 Pfam PF00437 Type II/IV secretion system protein 126 391 4.4E-91 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 12 496 7.9E-229 T 11-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 319 333 - T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 Gene3D G3DSA:3.30.450.90 89 224 4.5E-54 T 11-10-2018 VV93_v1c01970 cd86bc3e540f2cb073112140066c62fd 499 Gene3D G3DSA:3.40.50.300 226 499 6.1E-132 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Gene3D G3DSA:1.20.1330.10 45 173 2.4E-74 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Gene3D G3DSA:1.20.1330.10 285 336 1.6E-40 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Gene3D G3DSA:1.20.58.1830 342 376 1.6E-40 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Gene3D G3DSA:1.20.58.1830 5 33 2.4E-74 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Gene3D G3DSA:2.170.280.10 188 284 1.6E-40 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 293 376 4.9E-24 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 SUPERFAMILY SSF64518 5 376 2.48E-94 T 11-10-2018 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Pfam PF07196 Flagellin hook IN motif 204 246 3.3E-11 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 PRINTS PR00207 Flagellin signature 37 54 3.0E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 PRINTS PR00207 Flagellin signature 76 95 3.0E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 PRINTS PR00207 Flagellin signature 111 134 3.0E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21950 c5dd4aa84bcac1a6c9925d8d63cc0fed 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 5.3E-43 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c04770 98fef4f25cc6e445dd284b8180af96e9 174 Gene3D G3DSA:1.10.443.10 1 149 2.3E-23 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c04770 98fef4f25cc6e445dd284b8180af96e9 174 Pfam PF00589 Phage integrase family 1 141 3.5E-20 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c04770 98fef4f25cc6e445dd284b8180af96e9 174 SUPERFAMILY SSF56349 1 146 2.53E-30 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 SUPERFAMILY SSF56042 141 303 1.24E-35 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 PIRSF PIRSF005303 1 320 5.0E-83 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 320 27.201 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 Gene3D G3DSA:3.90.650.10 144 321 3.4E-50 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 SUPERFAMILY SSF55326 3 137 9.16E-33 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 Pfam PF02769 AIR synthase related protein, C-terminal domain 149 297 1.4E-10 T 11-10-2018 IPR010918 PurM-like, C-terminal domain VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 320 5.3E-104 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 Pfam PF00586 AIR synthase related protein, N-terminal domain 28 137 4.4E-21 T 11-10-2018 IPR016188 PurM-like, N-terminal domain VV93_v1c08050 d610dce020cf2bff8cc86c2f3e681e50 322 Gene3D G3DSA:3.30.1330.10 1 143 5.7E-42 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c42080 6b5b1401d9b89516834ab362a8f83dcb 361 Gene3D G3DSA:3.40.50.1110 139 357 1.2E-48 T 11-10-2018 IPR036514 SGNH hydrolase superfamily VV93_v1c42080 6b5b1401d9b89516834ab362a8f83dcb 361 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 146 323 9.9E-11 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain VV93_v1c42080 6b5b1401d9b89516834ab362a8f83dcb 361 Gene3D G3DSA:2.60.120.260 15 134 7.2E-18 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c42080 6b5b1401d9b89516834ab362a8f83dcb 361 SUPERFAMILY SSF52266 140 354 3.36E-15 T 11-10-2018 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 Pfam PF13580 SIS domain 44 166 6.5E-7 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 11-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 Gene3D G3DSA:3.40.50.10490 1 220 8.1E-81 T 11-10-2018 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 SUPERFAMILY SSF53697 8 250 1.85E-68 T 11-10-2018 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 43.651 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 Gene3D G3DSA:1.10.8.1080 221 299 3.8E-30 T 11-10-2018 VV93_v1c45270 55a3c905e14fa2aaba6eaf61c234734f 300 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 297 1.1E-133 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 VV93_v1c26500 eae6bf91e6b6a46ce42d5dfef730f1de 481 PIRSF PIRSF004919 15 481 1.8E-141 T 11-10-2018 IPR025502 TldD VV93_v1c26500 eae6bf91e6b6a46ce42d5dfef730f1de 481 Gene3D G3DSA:3.30.2290.10 14 240 2.6E-13 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VV93_v1c26500 eae6bf91e6b6a46ce42d5dfef730f1de 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 9.7E-65 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VV93_v1c26500 eae6bf91e6b6a46ce42d5dfef730f1de 481 SUPERFAMILY SSF111283 18 480 4.45E-127 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VV93_v1c43900 68139b76ece8d0553e00c496948528fe 333 SUPERFAMILY SSF55073 184 332 1.49E-37 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c43900 68139b76ece8d0553e00c496948528fe 333 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 176 332 1.1E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43900 68139b76ece8d0553e00c496948528fe 333 SMART SM00267 168 333 2.6E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43900 68139b76ece8d0553e00c496948528fe 333 Pfam PF00990 Diguanylate cyclase, GGDEF domain 179 330 1.7E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43900 68139b76ece8d0553e00c496948528fe 333 Gene3D G3DSA:3.30.70.270 168 333 1.2E-45 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 Gene3D G3DSA:1.10.287.470 79 93 3.4E-11 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 Gene3D G3DSA:1.10.287.470 103 172 4.1E-10 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 274 1.0E-19 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 Gene3D G3DSA:2.40.30.170 215 335 1.0E-23 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 SUPERFAMILY SSF111369 181 275 2.09E-6 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 Gene3D G3DSA:2.40.50.100 46 78 3.4E-11 T 11-10-2018 VV93_v1c43030 1c9ddc037bbf7df420c3452e3cfff58d 354 SUPERFAMILY SSF111369 45 113 5.89E-9 T 11-10-2018 VV93_v1c01610 d1024fba42d825302df78b92e28ac8b8 275 Gene3D G3DSA:1.10.3210.10 1 270 1.1E-64 T 11-10-2018 VV93_v1c01610 d1024fba42d825302df78b92e28ac8b8 275 SUPERFAMILY SSF109604 5 254 2.95E-56 T 11-10-2018 VV93_v1c01610 d1024fba42d825302df78b92e28ac8b8 275 Pfam PF08668 HDOD domain 13 203 2.6E-52 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 SMART SM01390 3 95 6.4E-50 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 SMART SM00363 96 160 8.9E-20 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 Gene3D G3DSA:1.10.1050.10 1 102 1.4E-44 T 11-10-2018 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.3 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 Gene3D G3DSA:3.10.290.10 103 191 1.1E-36 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 Pfam PF01479 S4 domain 97 143 2.5E-18 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 SUPERFAMILY SSF55174 3 206 1.83E-72 T 11-10-2018 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 2.6E-32 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 VV93_v1c03700 cfb35c2928f81406c567ef4683af5262 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 4.6E-85 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 Gene3D G3DSA:3.40.190.10 108 270 5.0E-26 T 11-10-2018 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 60 6.2E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 SUPERFAMILY SSF46785 1 80 6.23E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.2E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 Gene3D G3DSA:1.10.10.10 1 83 3.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 Gene3D G3DSA:3.40.190.10 148 246 5.0E-26 T 11-10-2018 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 SUPERFAMILY SSF53850 84 272 2.71E-26 T 11-10-2018 VV93_v1c36610 b266799ac6b7ca5d099943ea395a2063 285 Pfam PF03466 LysR substrate binding domain 115 275 9.6E-14 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 Gene3D G3DSA:3.40.50.300 1 285 1.7E-133 T 11-10-2018 VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 8.7E-64 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 Pfam PF06418 CTP synthase N-terminus 5 265 7.1E-125 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 Gene3D G3DSA:3.40.50.880 286 543 4.6E-106 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 SUPERFAMILY SSF52317 289 538 6.66E-89 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 SUPERFAMILY SSF52540 3 269 1.9E-121 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.404 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VV93_v1c25280 b4162f12567cd6edc544d67fe053e061 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 3.2E-262 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 Gene3D G3DSA:1.10.8.260 263 323 2.3E-132 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 SUPERFAMILY SSF51905 1 395 3.84E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 1.2E-8 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 370 1.2E-8 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.2E-8 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 Gene3D G3DSA:3.50.50.60 8 389 2.3E-132 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 SUPERFAMILY SSF160996 191 339 9.29E-44 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 348 370 4.3E-6 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.3E-6 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.3E-6 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 Pfam PF03486 HI0933-like protein 5 393 4.2E-156 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 Gene3D G3DSA:2.40.30.10 189 340 2.3E-132 T 11-10-2018 VV93_v1c00690 a532e81dff31e8465562988b980ba3e6 395 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 393 3.8E-132 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like VV93_v1c40730 dd0470d2baa103e9bab745795c978898 397 SUPERFAMILY SSF103473 4 384 5.49E-57 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c40730 dd0470d2baa103e9bab745795c978898 397 Pfam PF07690 Major Facilitator Superfamily 21 351 1.6E-42 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c40730 dd0470d2baa103e9bab745795c978898 397 Gene3D G3DSA:1.20.1720.10 10 385 3.7E-83 T 11-10-2018 VV93_v1c16580 05736732ddf8d50ee821d249b577c3b0 168 SUPERFAMILY SSF55729 3 165 9.57E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c16580 05736732ddf8d50ee821d249b577c3b0 168 Gene3D G3DSA:3.40.630.30 1 167 3.6E-28 T 11-10-2018 VV93_v1c16580 05736732ddf8d50ee821d249b577c3b0 168 Pfam PF13302 Acetyltransferase (GNAT) domain 7 143 1.7E-19 T 11-10-2018 IPR000182 GNAT domain VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Pfam PF00589 Phage integrase family 120 291 6.1E-52 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 13 305 56.17 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 15 97 5.1E-19 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 16 305 5.3E-116 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 SUPERFAMILY SSF47823 11 107 2.55E-34 T 11-10-2018 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 SUPERFAMILY SSF56349 113 303 1.85E-57 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 11 305 60.974 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Gene3D G3DSA:1.10.443.10 118 299 2.6E-73 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c06040 48283f596cf2afb44ad34c987e8deb63 305 Gene3D G3DSA:1.10.150.130 10 105 3.6E-22 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 396 45.747 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 SUPERFAMILY SSF51735 2 150 3.27E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 SUPERFAMILY SSF55347 126 274 1.24E-62 T 11-10-2018 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 SUPERFAMILY SSF69055 302 399 7.19E-30 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 391 2.0E-39 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Gene3D G3DSA:3.40.50.720 1 150 2.7E-52 T 11-10-2018 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Gene3D G3DSA:1.10.1740.10 312 401 1.2E-27 T 11-10-2018 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 397 6.3E-163 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 5.3E-37 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 1.4E-46 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c22700 8f71aca3282d3bd6256323d6acd5bc8c 402 PIRSF PIRSF006205 1 402 3.3E-152 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 825 850 3.9E-5 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 794 810 3.9E-5 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF55008 2 62 2.23E-7 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 817 829 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 596 610 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 794 813 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 719 730 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 741 751 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 444 458 2.8E-27 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF55008 66 125 7.59E-8 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:3.40.1110.10 607 726 9.0E-93 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF81665 342 590 4.45E-9 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF55008 171 237 3.8E-15 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 598 604 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Pfam PF00122 E1-E2 ATPase 395 575 7.4E-50 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 309 904 4.0E-185 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:3.30.70.100 171 238 7.4E-18 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 327 903 9.2E-184 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:3.40.50.1000 577 846 9.0E-93 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 366 871 3.8E-89 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:2.70.150.20 382 498 1.1E-37 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:3.30.70.100 67 124 5.7E-6 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Gene3D G3DSA:3.30.70.100 4 63 3.9E-7 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Pfam PF00403 Heavy-metal-associated domain 5 61 8.9E-7 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Pfam PF00403 Heavy-metal-associated domain 175 234 1.7E-12 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 ProSitePatterns PS01047 Heavy-metal-associated domain. 175 204 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 36 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF81653 397 494 5.62E-26 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 Pfam PF00702 haloacid dehalogenase-like hydrolase 592 808 4.8E-45 T 11-10-2018 VV93_v1c08750 defb2b5d56713074697a97eb062dcafd 912 SUPERFAMILY SSF56784 594 900 5.5E-60 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c17960 b8535810c2446946694c632f24cc4bad 368 Gene3D G3DSA:3.40.50.2000 184 366 6.4E-34 T 11-10-2018 VV93_v1c17960 b8535810c2446946694c632f24cc4bad 368 SUPERFAMILY SSF53756 5 367 2.08E-61 T 11-10-2018 VV93_v1c17960 b8535810c2446946694c632f24cc4bad 368 Pfam PF00534 Glycosyl transferases group 1 199 342 1.9E-26 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c17960 b8535810c2446946694c632f24cc4bad 368 Gene3D G3DSA:3.40.50.2000 2 183 1.0E-19 T 11-10-2018 VV93_v1c17960 b8535810c2446946694c632f24cc4bad 368 Pfam PF13439 Glycosyltransferase Family 4 18 177 7.3E-16 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c35680 3bb2fee51ce546c22d522bc3f18bdb82 113 Gene3D G3DSA:3.90.1150.30 1 113 9.3E-42 T 11-10-2018 IPR038056 YjbR-like superfamily VV93_v1c35680 3bb2fee51ce546c22d522bc3f18bdb82 113 Pfam PF04237 YjbR 14 102 6.7E-25 T 11-10-2018 IPR007351 Uncharacterised protein YjbR VV93_v1c35680 3bb2fee51ce546c22d522bc3f18bdb82 113 SUPERFAMILY SSF142906 1 112 5.49E-37 T 11-10-2018 IPR038056 YjbR-like superfamily VV93_v1c40170 5ca78d91b56ab43c7efa6ab2513f1b1f 157 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 66 154 9.6E-27 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c40170 5ca78d91b56ab43c7efa6ab2513f1b1f 157 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 24 59 5.4E-11 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VV93_v1c40170 5ca78d91b56ab43c7efa6ab2513f1b1f 157 Gene3D G3DSA:3.10.50.40 20 157 2.1E-52 T 11-10-2018 VV93_v1c40170 5ca78d91b56ab43c7efa6ab2513f1b1f 157 SUPERFAMILY SSF54534 19 156 6.29E-50 T 11-10-2018 VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 46.917 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 Gene3D G3DSA:3.30.9.10 134 362 1.0E-53 T 11-10-2018 VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 Gene3D G3DSA:3.50.50.60 93 405 1.0E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 Pfam PF01266 FAD dependent oxidoreductase 3 397 2.3E-70 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 Gene3D G3DSA:3.50.50.60 1 79 1.8E-8 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 SUPERFAMILY SSF51905 1 413 6.47E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c07260 858133d5c97783504ff38a9c5477da74 417 SUPERFAMILY SSF54373 270 360 1.7E-17 T 11-10-2018 VV93_v1c35370 ec6a35c04f0cc18fc1543ea856860834 129 Pfam PF00581 Rhodanese-like domain 39 117 8.5E-16 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c35370 ec6a35c04f0cc18fc1543ea856860834 129 SMART SM00450 34 128 4.2E-20 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c35370 ec6a35c04f0cc18fc1543ea856860834 129 Gene3D G3DSA:3.40.250.10 36 123 3.8E-27 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c35370 ec6a35c04f0cc18fc1543ea856860834 129 SUPERFAMILY SSF52821 14 124 1.05E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 261 1.7E-115 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 SUPERFAMILY SSF117143 93 223 5.75E-33 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 137 3.7E-38 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 1.1E-30 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 Pfam PF00460 Flagella basal body rod protein 5 35 6.9E-11 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 260 4.5E-24 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VV93_v1c08930 982f589fee58374ffa26f77c1b2896f3 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 Gene3D G3DSA:3.40.50.300 4 211 1.3E-63 T 11-10-2018 VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 Hamap MF_00165 Thymidylate kinase [tmk]. 5 207 27.325 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 199 8.0E-64 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 ProSitePatterns PS01331 Thymidylate kinase signature. 96 108 - T 11-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 SUPERFAMILY SSF52540 1 210 1.4E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11970 b62b83239ba9604b43b9d961b205db76 212 Pfam PF02223 Thymidylate kinase 9 199 3.7E-58 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 VV93_v1c30650 080fa2b87f299ecc75af911d3056e969 596 Gene3D G3DSA:3.20.20.80 2 151 3.0E-22 T 11-10-2018 VV93_v1c30650 080fa2b87f299ecc75af911d3056e969 596 Gene3D G3DSA:3.20.20.80 231 451 3.0E-41 T 11-10-2018 VV93_v1c30650 080fa2b87f299ecc75af911d3056e969 596 SUPERFAMILY SSF51445 4 487 3.51E-85 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30650 080fa2b87f299ecc75af911d3056e969 596 Pfam PF00128 Alpha amylase, catalytic domain 48 427 1.3E-21 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c30650 080fa2b87f299ecc75af911d3056e969 596 SMART SM00642 10 481 1.4E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 SUPERFAMILY SSF54197 6 179 6.81E-73 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 SUPERFAMILY SSF54197 181 348 3.06E-55 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 4 349 5.5E-186 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 153 170 - T 11-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 186 349 2.3E-65 T 11-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 Gene3D G3DSA:3.30.428.10 178 350 2.9E-72 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 PIRSF PIRSF000808 2 345 2.4E-124 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 Gene3D G3DSA:3.30.428.10 46 177 1.2E-55 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c23560 36f30fe4a1e3b3cc1dbf24e01162ec80 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 6 178 2.5E-67 T 11-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 SUPERFAMILY SSF51161 1 262 1.6E-84 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 PIRSF PIRSF000456 4 262 2.0E-111 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.1E-111 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 6 32 4.5E-6 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.6E-8 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Gene3D G3DSA:2.160.10.10 1 196 5.0E-55 T 11-10-2018 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 4.9E-31 T 11-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Gene3D G3DSA:1.20.1180.10 197 262 2.0E-26 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 VV93_v1c22640 64459c7ce6fb23096a0594373061d83d 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 48.33 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 143 8.2E-37 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 SUPERFAMILY SSF52788 1 146 1.83E-41 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 8.2E-27 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 45 61 8.2E-27 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 101 114 8.2E-27 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 8.2E-27 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 117 132 8.2E-27 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 Gene3D G3DSA:3.40.50.2300 1 146 1.3E-50 T 11-10-2018 VV93_v1c03220 f15b20be53f135e75c346e6e8be58e77 146 SMART SM00226 3 145 3.2E-51 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VV93_v1c39580 b8e39c7adc4ac99ac798483659ff7ee3 216 Gene3D G3DSA:3.40.50.880 1 216 4.6E-89 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c39580 b8e39c7adc4ac99ac798483659ff7ee3 216 SUPERFAMILY SSF52317 1 215 2.21E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c39580 b8e39c7adc4ac99ac798483659ff7ee3 216 PIRSF PIRSF006320 1 216 3.7E-105 T 11-10-2018 IPR026041 Glyoxalase ElbB VV93_v1c37650 60093c674d2bd0a1ebf2690269359f1d 481 Gene3D G3DSA:3.50.50.60 8 134 3.3E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c37650 60093c674d2bd0a1ebf2690269359f1d 481 Pfam PF01266 FAD dependent oxidoreductase 12 344 3.5E-11 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c37650 60093c674d2bd0a1ebf2690269359f1d 481 SUPERFAMILY SSF51905 11 308 1.47E-20 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 PIRSF PIRSF006648 7 253 2.7E-24 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 Pfam PF01061 ABC-2 type transporter 8 218 6.4E-39 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 9.4E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 102 127 9.4E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 9.4E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c24770 7cd08ccea99baef8a5a932b4eac4bb62 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 9.4E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 Gene3D G3DSA:3.20.20.60 6 341 1.8E-154 T 11-10-2018 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 4.5E-130 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 Gene3D G3DSA:2.40.33.10 74 172 1.8E-154 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 SUPERFAMILY SSF50800 74 169 7.15E-25 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 SUPERFAMILY SSF52935 329 480 1.09E-37 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 250 274 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 63 79 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 275 299 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 190 204 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 300 318 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 223 249 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 PRINTS PR01050 Pyruvate kinase family signature 319 335 2.2E-55 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 478 3.8E-28 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 SUPERFAMILY SSF51621 4 345 9.81E-86 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 3.7E-167 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c12070 cdb63c039a02f31e1940b41f21752b3a 482 Gene3D G3DSA:3.40.1380.20 342 476 1.8E-154 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 47.142 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 Gene3D G3DSA:3.40.50.450 4 287 1.1E-115 T 11-10-2018 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 SUPERFAMILY SSF53784 3 310 1.2E-112 T 11-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 11-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 6.5E-129 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PIRSF PIRSF000532 1 320 2.9E-126 T 11-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 5.9E-83 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 Gene3D G3DSA:3.40.50.460 143 252 1.1E-115 T 11-10-2018 VV93_v1c28320 ae815f0be22e5f1c50de6257ccaffd52 320 Pfam PF00365 Phosphofructokinase 4 276 2.5E-108 T 11-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 VV93_v1c30860 e26953414639c602c32d6d1f91092668 321 Pfam PF15575 Immunity protein 49 102 295 1.0E-6 T 11-10-2018 IPR029074 Immunity protein 49 VV93_v1c31560 2354d7346f26c4d4b86b6e0a38e581c3 218 SUPERFAMILY SSF48498 91 207 9.53E-6 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c31560 2354d7346f26c4d4b86b6e0a38e581c3 218 SUPERFAMILY SSF46689 7 85 7.7E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31560 2354d7346f26c4d4b86b6e0a38e581c3 218 Gene3D G3DSA:1.10.357.10 2 216 8.2E-59 T 11-10-2018 VV93_v1c31560 2354d7346f26c4d4b86b6e0a38e581c3 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 65 3.7E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 Gene3D G3DSA:3.90.228.20 236 526 5.1E-236 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 SUPERFAMILY SSF68923 11 228 4.19E-87 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 SUPERFAMILY SSF53795 230 541 3.14E-127 T 11-10-2018 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 Gene3D G3DSA:3.40.449.10 25 235 5.1E-236 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 Pfam PF01293 Phosphoenolpyruvate carboxykinase 24 491 7.2E-212 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 266 281 - T 11-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 11 541 1.1E-274 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 18 539 54.967 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 PIRSF PIRSF006294 4 541 7.3E-228 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 VV93_v1c01920 7087796ae5f5ea13fd07c6eb2a269c5a 542 Gene3D G3DSA:2.170.8.10 49 351 5.1E-236 T 11-10-2018 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 SMART SM01240 7 473 0.0 T 11-10-2018 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 SUPERFAMILY SSF54631 94 203 1.89E-26 T 11-10-2018 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 SUPERFAMILY SSF51412 1 477 8.37E-126 T 11-10-2018 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 1.0E-196 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 PIRSF PIRSF000130 1 487 3.3E-202 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.4E-163 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 SMART SM00116 96 144 1.0E-12 T 11-10-2018 IPR000644 CBS domain VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 SMART SM00116 158 206 2.3E-5 T 11-10-2018 IPR000644 CBS domain VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 Gene3D G3DSA:3.20.20.70 1 486 1.2E-212 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 85.456 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 Pfam PF00571 CBS domain 95 140 7.2E-10 T 11-10-2018 IPR000644 CBS domain VV93_v1c07210 28cecf7c5624474eb3ba91cc7883c5ba 487 Pfam PF00571 CBS domain 149 201 4.7E-4 T 11-10-2018 IPR000644 CBS domain VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Gene3D G3DSA:1.10.238.260 280 393 2.3E-32 T 11-10-2018 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 508 42.356 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 498 2.9E-30 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 SMART SM00917 369 499 4.1E-28 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 SUPERFAMILY SSF110921 392 498 8.24E-21 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 SUPERFAMILY SSF51569 1 291 2.38E-100 T 11-10-2018 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 496 1.8E-237 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Gene3D G3DSA:3.30.160.270 394 500 2.9E-7 T 11-10-2018 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Pfam PF00682 HMGL-like 4 273 2.3E-101 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VV93_v1c04550 e500defb8be47ecceda6043b560fa6e1 515 Gene3D G3DSA:3.20.20.70 1 277 7.1E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 Pfam PF00005 ABC transporter 22 191 8.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 Gene3D G3DSA:3.40.50.300 286 555 5.1E-76 T 11-10-2018 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 SMART SM00382 348 518 1.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 SMART SM00382 31 236 5.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 Pfam PF12848 ABC transporter 230 306 4.1E-13 T 11-10-2018 IPR032781 ABC-transporter extension domain VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 SUPERFAMILY SSF52540 9 243 4.46E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 553 4.6E-292 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 SUPERFAMILY SSF52540 303 525 2.48E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 Pfam PF00005 ABC transporter 340 473 1.5E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 Gene3D G3DSA:3.40.50.300 1 285 8.1E-88 T 11-10-2018 VV93_v1c06420 393887e583d923cf797a002ebe00b22e 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 515 587 3.0E-21 T 11-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 234 360 1.8E-31 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 589 727 3.4E-50 T 11-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Gene3D G3DSA:3.40.50.300 13 177 7.5E-102 T 11-10-2018 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 SUPERFAMILY SSF52540 34 222 2.0E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 SMART SM00382 37 179 2.1E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Gene3D G3DSA:1.20.272.10 242 361 4.0E-40 T 11-10-2018 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.8E-132 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Pfam PF13177 DNA polymerase III, delta subunit 20 178 6.0E-44 T 11-10-2018 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 SUPERFAMILY SSF48019 243 362 5.7E-33 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Gene3D G3DSA:1.10.8.60 8 240 7.5E-102 T 11-10-2018 VV93_v1c21180 54bd9c6cd85325791c253b8c2e82d26a 730 Gene3D G3DSA:3.30.300.150 574 712 1.6E-40 T 11-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 Pfam PF00929 Exonuclease 11 190 3.5E-23 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 PIRSF PIRSF000977 1 473 1.2E-198 T 11-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 Gene3D G3DSA:2.30.30.450 212 350 1.6E-55 T 11-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 Pfam PF08411 Exonuclease C-terminal 210 469 1.3E-103 T 11-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 SUPERFAMILY SSF53098 7 471 7.59E-136 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 Gene3D G3DSA:1.20.1280.70 357 418 1.6E-28 T 11-10-2018 VV93_v1c13810 06ac64d65dd393c25370a73b36ef1a0a 473 Gene3D G3DSA:3.30.420.10 1 199 6.9E-73 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Pfam PF00563 EAL domain 411 635 3.4E-40 T 11-10-2018 IPR001633 EAL domain VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 SUPERFAMILY SSF55073 243 391 4.55E-17 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Gene3D G3DSA:3.30.1040.50 102 151 4.3E-17 T 11-10-2018 VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Gene3D G3DSA:3.30.70.270 223 393 1.5E-21 T 11-10-2018 VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 SMART SM00052 403 635 8.0E-12 T 11-10-2018 IPR001633 EAL domain VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Gene3D G3DSA:3.20.20.450 401 636 2.6E-40 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 SUPERFAMILY SSF141868 411 636 2.88E-40 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 387 1.0E-13 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 Pfam PF16448 LapD/MoxY periplasmic domain 23 146 9.5E-37 T 11-10-2018 IPR032244 LapD/MoxY, periplasmic domain VV93_v1c45170 2992ec7db6ee49d527717b0e3c376d63 637 SMART SM00267 226 393 4.3E-13 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 37.793 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 SUPERFAMILY SSF53335 13 204 4.56E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 Gene3D G3DSA:3.40.50.150 1 206 1.6E-74 T 11-10-2018 VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 203 2.1E-67 T 11-10-2018 VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 3 206 2.1E-76 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VV93_v1c25210 2d7f84d93094f4888391bee6bf842399 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 VV93_v1c21000 417a7acf0c881af764baa85ec218fcc3 308 SUPERFAMILY SSF159501 28 277 9.42E-72 T 11-10-2018 VV93_v1c21000 417a7acf0c881af764baa85ec218fcc3 308 Gene3D G3DSA:3.40.50.11550 40 261 1.8E-26 T 11-10-2018 VV93_v1c21000 417a7acf0c881af764baa85ec218fcc3 308 Gene3D G3DSA:1.10.8.760 148 212 1.8E-26 T 11-10-2018 VV93_v1c21000 417a7acf0c881af764baa85ec218fcc3 308 PIRSF PIRSF020419 1 292 1.5E-75 T 11-10-2018 IPR016773 Ferric uptake regulator, CjrA, predicted VV93_v1c21000 417a7acf0c881af764baa85ec218fcc3 308 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 49 248 1.9E-58 T 11-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 SUPERFAMILY SSF58104 229 538 9.55E-68 T 11-10-2018 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 Pfam PF17200 Single Cache domain 2 41 183 2.4E-39 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 SMART SM00304 209 261 1.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 SMART SM00283 276 537 1.6E-59 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 SMART SM01049 35 127 2.1E-31 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 501 2.3E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 Pfam PF00672 HAMP domain 211 257 2.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 Gene3D G3DSA:1.10.287.950 208 538 2.2E-67 T 11-10-2018 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 Gene3D G3DSA:3.30.450.20 37 183 3.6E-44 T 11-10-2018 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 304 333 1.7E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c38560 df41cd5fe2d6e22bb92ef4abd84f11ed 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 1.7E-7 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 Gene3D G3DSA:1.10.275.10 1 117 8.1E-50 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 456 6.5E-151 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 Gene3D G3DSA:1.10.40.30 383 446 8.5E-159 T 11-10-2018 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 SUPERFAMILY SSF48557 4 448 8.48E-109 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 Gene3D G3DSA:1.20.200.10 118 447 8.5E-159 T 11-10-2018 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 2.6E-52 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 Pfam PF00206 Lyase 14 313 4.3E-75 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 5.9E-18 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 5.9E-18 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 5.9E-18 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c12550 654056fc1bb02bac64f03062b2160b52 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 5.9E-18 T 11-10-2018 IPR000362 Fumarate lyase family VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 Gene3D G3DSA:3.40.190.10 182 280 1.9E-59 T 11-10-2018 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 Pfam PF03466 LysR substrate binding domain 97 307 1.6E-31 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 5.4E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 SUPERFAMILY SSF46785 7 86 1.69E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 Gene3D G3DSA:1.10.10.10 2 88 3.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 SUPERFAMILY SSF53850 92 307 4.65E-50 T 11-10-2018 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c29190 926297af60281f78317f03ca5ecc1b39 313 Gene3D G3DSA:3.40.190.10 94 304 1.9E-59 T 11-10-2018 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Gene3D G3DSA:3.40.50.300 132 313 3.2E-62 T 11-10-2018 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 SUPERFAMILY SSF52172 3 186 3.98E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Gene3D G3DSA:3.40.50.2300 1 131 1.4E-29 T 11-10-2018 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Pfam PF02954 Bacterial regulatory protein, Fis family 451 487 1.1E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Pfam PF00158 Sigma-54 interaction domain 143 309 1.1E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Gene3D G3DSA:1.10.10.60 445 488 1.3E-7 T 11-10-2018 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Gene3D G3DSA:1.10.8.60 314 394 1.3E-27 T 11-10-2018 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 SUPERFAMILY SSF52540 142 385 2.55E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 SUPERFAMILY SSF46689 439 492 7.17E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 SMART SM00448 3 114 2.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 Pfam PF00072 Response regulator receiver domain 5 114 1.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 SMART SM00382 162 304 1.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c15020 1a1d8a2dd3d9464dfcdfb4e3c1f3dfc6 497 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 Gene3D G3DSA:3.30.420.10 2 159 1.3E-53 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.921 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 SUPERFAMILY SSF53098 3 156 7.59E-56 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 1.2E-75 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 2.5E-63 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c19970 a6fa5a75febfb10ef986c208a4344274 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.9E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82714 731 815 1.83E-9 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82866 820 1047 1.29E-41 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:1.20.1640.10 20 517 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:1.20.1640.10 518 1040 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.2090.10 188 278 5.9E-227 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Pfam PF00873 AcrB/AcrD/AcrF family 14 1042 1.2E-157 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82693 149 336 6.54E-10 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.70.1430 47 826 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82693 567 681 1.15E-13 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82693 47 138 4.01E-19 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82866 305 503 4.32E-37 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.70.1320 143 340 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.70.1440 679 888 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 SUPERFAMILY SSF82714 194 275 1.16E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.70.1430 569 678 5.9E-227 T 11-10-2018 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 Gene3D G3DSA:3.30.2090.10 728 818 5.9E-227 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 452 475 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 45 63 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 398 422 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 477 500 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 370 391 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c38400 c3ad424ab544b602163b9660bd6e90b9 1049 PRINTS PR00702 Acriflavin resistance protein family signature 17 41 6.6E-26 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c30340 f2a494f0e15323902d094490bab5f274 408 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 5 407 24.042 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c30340 f2a494f0e15323902d094490bab5f274 408 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 11 407 2.8E-137 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c30340 f2a494f0e15323902d094490bab5f274 408 Pfam PF03616 Sodium/glutamate symporter 10 376 8.3E-148 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 7.4E-141 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 Gene3D G3DSA:3.90.25.10 194 329 3.8E-145 T 11-10-2018 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 1.1E-59 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 SUPERFAMILY SSF51735 2 336 6.05E-98 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 Gene3D G3DSA:3.40.50.720 3 274 3.8E-145 T 11-10-2018 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 PRINTS PR01713 Nucleotide sugar epimerase signature 231 246 9.5E-6 T 11-10-2018 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 9.5E-6 T 11-10-2018 VV93_v1c23570 b927596f89112e046bee45216f90c5fc 339 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 9.5E-6 T 11-10-2018 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 Gene3D G3DSA:1.20.1250.20 28 230 9.5E-34 T 11-10-2018 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 ProSitePatterns PS00942 glpT family of transporters signature. 156 172 - T 11-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 426 9.6E-140 T 11-10-2018 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 Pfam PF07690 Major Facilitator Superfamily 35 396 3.3E-34 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 Gene3D G3DSA:1.20.1250.20 246 459 3.9E-38 T 11-10-2018 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 PIRSF PIRSF002808 9 460 1.1E-108 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VV93_v1c40030 c0cdc2622ee6edfa0f3f3b0673f246d2 465 SUPERFAMILY SSF103473 17 450 2.09E-59 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c11290 8afac06747db536d24aee11bb70bb344 98 SUPERFAMILY SSF54909 1 98 3.58E-32 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c11290 8afac06747db536d24aee11bb70bb344 98 Gene3D G3DSA:3.30.70.1060 1 98 2.6E-38 T 11-10-2018 VV93_v1c11290 8afac06747db536d24aee11bb70bb344 98 Pfam PF03795 YCII-related domain 1 95 5.2E-30 T 11-10-2018 IPR005545 YCII-related VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 786 895 2.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:1.10.287.130 643 736 1.5E-20 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.30.565.10 737 897 1.9E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.40.190.10 274 485 8.0E-21 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:1.20.120.160 1117 1217 6.3E-10 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF52172 995 1121 9.96E-30 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SMART SM00062 40 251 0.0014 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.40.50.2300 992 1116 3.2E-29 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF47226 1119 1216 5.36E-14 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SMART SM00388 673 738 3.6E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF53850 273 492 2.5E-15 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SMART SM00387 785 896 2.1E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF55874 727 897 7.6E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF47384 659 739 1.0E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SMART SM00448 994 1108 3.9E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Pfam PF00512 His Kinase A (phospho-acceptor) domain 673 738 1.5E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.40.190.10 127 217 7.3E-23 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.40.190.10 360 450 8.0E-21 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Gene3D G3DSA:3.40.190.10 57 240 7.3E-23 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Pfam PF00072 Response regulator receiver domain 996 1106 9.7E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Pfam PF01627 Hpt domain 1133 1206 3.4E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 60 240 5.6E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 SUPERFAMILY SSF53850 60 240 8.47E-24 T 11-10-2018 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 821 835 5.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 880 893 5.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 839 849 5.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c33130 c2c82788613ab318e428def962d98705 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 874 5.7E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SUPERFAMILY SSF141868 535 784 6.15E-82 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 514 4.7E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SMART SM00304 303 356 8.4E-14 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SMART SM00052 529 774 1.1E-93 T 11-10-2018 IPR001633 EAL domain VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SMART SM00267 351 519 1.6E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SUPERFAMILY SSF55073 367 519 1.8E-33 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 360 519 2.6E-29 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Pfam PF14827 Double sensory domain of two-component sensor kinase 47 202 7.4E-11 T 11-10-2018 IPR029150 Double Cache domain 3 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Gene3D G3DSA:3.30.70.270 360 531 2.5E-44 T 11-10-2018 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 SUPERFAMILY SSF158472 304 353 1.26E-11 T 11-10-2018 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Gene3D G3DSA:3.20.20.450 532 786 9.2E-87 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Gene3D G3DSA:1.20.1480.50 270 359 3.2E-15 T 11-10-2018 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Pfam PF00672 HAMP domain 303 353 9.9E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c40430 1bb6989e2656bf3aa8fe0fcbf9e4554c 797 Pfam PF00563 EAL domain 535 769 3.7E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c36200 ae7e4bd02d8079a88637097cd5a6469c 311 Pfam PF01032 FecCD transport family 8 306 1.0E-63 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c36200 ae7e4bd02d8079a88637097cd5a6469c 311 SUPERFAMILY SSF81345 4 306 3.66E-63 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c36200 ae7e4bd02d8079a88637097cd5a6469c 311 Gene3D G3DSA:1.10.3470.10 1 311 6.0E-61 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 11-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 Gene3D G3DSA:3.40.50.1260 165 373 4.2E-151 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 SUPERFAMILY SSF53748 3 382 1.18E-144 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 Gene3D G3DSA:3.40.50.1260 10 379 4.2E-151 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 Pfam PF00162 Phosphoglycerate kinase 6 373 3.8E-139 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PIRSF PIRSF000724 1 386 6.8E-134 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.281 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25650 30211774b945d5438bf74e9b65c9b34a 386 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 1.4E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c26510 0d787aca9d8459b475385d987f42b6d6 274 Gene3D G3DSA:3.60.110.10 1 269 1.4E-93 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c26510 0d787aca9d8459b475385d987f42b6d6 274 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 149 169 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site VV93_v1c26510 0d787aca9d8459b475385d987f42b6d6 274 Pfam PF00795 Carbon-nitrogen hydrolase 3 255 8.9E-59 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VV93_v1c26510 0d787aca9d8459b475385d987f42b6d6 274 SUPERFAMILY SSF56317 3 263 1.96E-84 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 Gene3D G3DSA:2.30.30.60 135 184 2.4E-22 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 149 183 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 Pfam PF05552 Conserved TM helix 21 69 1.0E-12 T 11-10-2018 IPR008910 Conserved TM helix VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 SUPERFAMILY SSF50182 120 185 1.21E-17 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 Pfam PF00924 Mechanosensitive ion channel 77 274 2.0E-57 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 SUPERFAMILY SSF82861 33 118 6.67E-18 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 SUPERFAMILY SSF82689 187 284 1.7E-34 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VV93_v1c25630 c109c828ce7b4f79658d7c4ac842198a 287 Gene3D G3DSA:3.30.70.100 185 279 9.0E-30 T 11-10-2018 VV93_v1c03330 b5fa9c0a37cf34fdfd8caf8e80ab86d6 374 Gene3D G3DSA:3.40.50.2000 179 353 7.2E-46 T 11-10-2018 VV93_v1c03330 b5fa9c0a37cf34fdfd8caf8e80ab86d6 374 Gene3D G3DSA:3.40.50.2000 19 364 7.2E-46 T 11-10-2018 VV93_v1c03330 b5fa9c0a37cf34fdfd8caf8e80ab86d6 374 SUPERFAMILY SSF53756 18 365 7.33E-60 T 11-10-2018 VV93_v1c03330 b5fa9c0a37cf34fdfd8caf8e80ab86d6 374 Pfam PF13477 Glycosyl transferase 4-like 2 153 3.0E-10 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c03330 b5fa9c0a37cf34fdfd8caf8e80ab86d6 374 Pfam PF00534 Glycosyl transferases group 1 190 345 1.8E-30 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c38730 ffac497f6b6ecb443179e3906a9a125d 225 Gene3D G3DSA:3.10.129.10 76 223 5.6E-35 T 11-10-2018 VV93_v1c38730 ffac497f6b6ecb443179e3906a9a125d 225 SUPERFAMILY SSF54637 79 218 2.68E-28 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c38730 ffac497f6b6ecb443179e3906a9a125d 225 Pfam PF01575 MaoC like domain 82 200 1.2E-22 T 11-10-2018 IPR002539 MaoC-like dehydratase domain VV93_v1c10550 e7c497721520b662880ac4374a349502 288 Pfam PF13622 Thioesterase-like superfamily 33 282 9.8E-60 T 11-10-2018 VV93_v1c10550 e7c497721520b662880ac4374a349502 288 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 3.8E-94 T 11-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 VV93_v1c10550 e7c497721520b662880ac4374a349502 288 SUPERFAMILY SSF54637 116 283 7.88E-59 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c10550 e7c497721520b662880ac4374a349502 288 SUPERFAMILY SSF54637 6 114 6.67E-39 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c10550 e7c497721520b662880ac4374a349502 288 Gene3D G3DSA:3.10.129.90 2 285 1.9E-105 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 Gene3D G3DSA:3.40.50.300 68 281 4.7E-40 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 SUPERFAMILY SSF52540 70 294 2.84E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 SMART SM00382 93 247 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 85 113 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 176 200 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 324 347 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 215 243 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 126 143 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 10 34 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 PRINTS PR01874 DNA repair protein radA signature 250 276 1.2E-93 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 Hamap MF_01498 DNA repair protein RadA [radA]. 21 457 43.049 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 453 1.5E-226 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 Pfam PF13541 Subunit ChlI of Mg-chelatase 347 432 7.8E-9 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 Pfam PF13481 AAA domain 82 224 5.9E-13 T 11-10-2018 VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 SUPERFAMILY SSF54211 257 455 1.74E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c23930 1def5db2c8ca936ade033d1f604ad618 459 Gene3D G3DSA:3.30.230.10 328 458 5.2E-14 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 SUPERFAMILY SSF69593 59 243 2.62E-7 T 11-10-2018 VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 Pfam PF01553 Acyltransferase 66 193 1.5E-5 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 Pfam PF13444 Acetyltransferase (GNAT) domain 333 433 1.6E-21 T 11-10-2018 VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 SUPERFAMILY SSF55729 315 455 1.11E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 SMART SM00563 75 199 1.4E-5 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c04750 f4f8a374c7c3db3635128d689c91eede 585 Gene3D G3DSA:3.40.630.30 333 457 1.3E-7 T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 SUPERFAMILY SSF53822 76 320 2.16E-42 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 Gene3D G3DSA:3.40.50.2300 159 286 1.2E-44 T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 Gene3D G3DSA:3.40.50.2300 77 317 1.2E-44 T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 1.4E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.8E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.8E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 Gene3D G3DSA:1.10.260.40 1 58 1.1E-17 T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 Pfam PF13377 Periplasmic binding protein-like domain 167 326 2.1E-32 T 11-10-2018 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 SUPERFAMILY SSF47413 3 52 4.31E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c23580 08d5fcdccc1204b1084adfe244366dd6 332 SMART SM00354 1 66 5.1E-14 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 SUPERFAMILY SSF53187 20 213 1.38E-14 T 11-10-2018 VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 Pfam PF08014 Domain of unknown function (DUF1704) 313 647 6.4E-109 T 11-10-2018 IPR012548 Protein of unknown function DUF1704 VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 Gene3D G3DSA:3.40.630.40 17 235 2.2E-6 T 11-10-2018 VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 SMART SM01154 312 650 1.3E-153 T 11-10-2018 IPR012548 Protein of unknown function DUF1704 VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 Pfam PF05013 N-formylglutamate amidohydrolase 26 213 2.6E-19 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase VV93_v1c30380 5d4237962bbb994bdcd37e64e5197488 651 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 287 633 2.1E-119 T 11-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 SUPERFAMILY SSF55424 344 463 1.89E-30 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 SUPERFAMILY SSF51905 5 319 2.35E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Gene3D G3DSA:3.50.50.60 158 276 1.4E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Gene3D G3DSA:3.30.390.30 345 464 1.8E-32 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PIRSF PIRSF000350 1 463 5.4E-71 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Gene3D G3DSA:3.50.50.60 7 333 1.4E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 7.3E-52 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 4.1E-60 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 9.5E-30 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 2.4E-28 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 2.4E-28 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 2.4E-28 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.4E-28 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 2.4E-28 T 11-10-2018 VV93_v1c01130 1dc51d1e3c87f631ee57c7295b0b175e 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 65.336 T 11-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Gene3D G3DSA:3.90.105.10 31 178 2.3E-145 T 11-10-2018 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Pfam PF03454 MoeA C-terminal region (domain IV) 336 406 3.4E-20 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 317 5.1E-33 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Pfam PF00994 Probable molybdopterin binding domain 187 320 2.0E-25 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 171 6.0E-47 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Gene3D G3DSA:3.40.980.10 179 331 2.3E-145 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Gene3D G3DSA:2.170.190.11 53 145 2.3E-145 T 11-10-2018 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 SUPERFAMILY SSF63867 332 410 1.03E-22 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 SUPERFAMILY SSF63882 7 180 3.14E-57 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 Gene3D G3DSA:2.40.340.10 332 401 2.3E-145 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 SUPERFAMILY SSF53218 181 326 1.05E-41 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 SMART SM00852 184 321 1.5E-41 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c40330 f7e70758b3ab09f21ee79510bc977d37 411 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 257 290 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 SUPERFAMILY SSF109604 37 205 1.35E-41 T 11-10-2018 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Gene3D G3DSA:3.30.70.260 662 741 6.0E-15 T 11-10-2018 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Pfam PF02824 TGS domain 403 462 1.7E-21 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Gene3D G3DSA:1.10.3210.10 42 205 2.2E-34 T 11-10-2018 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 SMART SM00954 250 360 3.2E-64 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 SUPERFAMILY SSF81271 396 462 1.07E-20 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Gene3D G3DSA:3.30.460.10 208 340 1.0E-49 T 11-10-2018 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Pfam PF13328 HD domain 52 190 4.3E-35 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Pfam PF13291 ACT domain 663 739 6.5E-14 T 11-10-2018 IPR002912 ACT domain VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Pfam PF04607 Region found in RelA / SpoT proteins 250 359 2.8E-36 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 Gene3D G3DSA:3.10.20.30 397 470 6.4E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 2.5E-184 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 SUPERFAMILY SSF81301 195 407 1.41E-62 T 11-10-2018 VV93_v1c25300 a35a354615fcaeeffe503edd3b9b1b2e 741 SUPERFAMILY SSF55021 664 739 3.57E-9 T 11-10-2018 VV93_v1c38570 70453974830fcd3b06b1ffbca3cce319 442 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 373 1.9E-147 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c38570 70453974830fcd3b06b1ffbca3cce319 442 PIRSF PIRSF004539 1 441 7.6E-182 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c38570 70453974830fcd3b06b1ffbca3cce319 442 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 440 4.9E-145 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 Gene3D G3DSA:3.30.9.50 80 269 2.1E-95 T 11-10-2018 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 Gene3D G3DSA:3.50.50.60 5 335 2.1E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 3.1E-10 T 11-10-2018 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 3.1E-10 T 11-10-2018 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 3.1E-10 T 11-10-2018 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 3.1E-10 T 11-10-2018 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 SUPERFAMILY SSF51905 3 381 5.18E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 5 387 2.0E-146 T 11-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 Pfam PF01494 FAD binding domain 4 335 2.1E-23 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 387 7.2E-123 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VV93_v1c25540 f0e5ea0e6c4010761460db535ab3a6c1 391 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 294 307 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 170 1.1E-59 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Gene3D G3DSA:3.40.50.970 366 574 4.5E-66 T 11-10-2018 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 2.0E-50 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 SUPERFAMILY SSF52467 191 364 5.07E-64 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 5 569 1.6E-273 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 433 452 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 332 1.4E-47 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 SUPERFAMILY SSF52518 373 567 5.33E-68 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Gene3D G3DSA:3.40.50.1220 192 362 3.3E-61 T 11-10-2018 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 Gene3D G3DSA:3.40.50.970 1 182 8.2E-74 T 11-10-2018 VV93_v1c04610 faf33e74fc80c1a9f0dd62f4a2c92b7f 574 SUPERFAMILY SSF52518 2 180 3.07E-65 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c13140 5d44c2505ed73b3fb85e561d4c7ecba3 231 Gene3D G3DSA:3.30.2350.10 1 196 7.4E-46 T 11-10-2018 VV93_v1c13140 5d44c2505ed73b3fb85e561d4c7ecba3 231 SUPERFAMILY SSF55120 2 197 1.92E-44 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c13140 5d44c2505ed73b3fb85e561d4c7ecba3 231 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 1 220 5.6E-104 T 11-10-2018 IPR006508 Pseudouridine synthase, RluA-like VV93_v1c13140 5d44c2505ed73b3fb85e561d4c7ecba3 231 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c13140 5d44c2505ed73b3fb85e561d4c7ecba3 231 Pfam PF00849 RNA pseudouridylate synthase 10 153 3.5E-24 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c37380 81ba2562db3e6c0af025366df3a8b903 340 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 320 9.3E-106 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 VV93_v1c37380 81ba2562db3e6c0af025366df3a8b903 340 Pfam PF03741 Integral membrane protein TerC family 87 288 2.8E-54 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 2.1E-213 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 1.5E-30 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 6.4E-141 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 SUPERFAMILY SSF55931 102 468 5.4E-140 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 SMART SM01230 102 379 1.7E-155 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 Gene3D G3DSA:3.30.590.10 105 457 8.1E-151 T 11-10-2018 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 SUPERFAMILY SSF54368 3 100 1.26E-35 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c01840 8a51775a76da460e6116335bcbdf97da 469 Gene3D G3DSA:3.10.20.70 2 104 3.4E-40 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 Gene3D G3DSA:3.20.20.10 71 355 1.1E-240 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 1.0E-12 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 549 562 1.0E-12 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 246 259 1.0E-12 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 102 120 1.0E-12 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 Gene3D G3DSA:2.40.37.10 18 576 1.1E-240 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 Gene3D G3DSA:1.20.58.930 372 467 1.1E-240 T 11-10-2018 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PIRSF PIRSF001336 2 640 5.7E-257 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 80 350 1.1E-51 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 7 639 43.419 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 SUPERFAMILY SSF51419 70 352 1.54E-64 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 TIGRFAM TIGR01273 speA: arginine decarboxylase 11 638 1.3E-270 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 94 108 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 70 85 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 471 492 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 496 521 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 330 347 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 153 168 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 203 225 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 179 200 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c17470 de6d9e19d766d65a414064b5ed3cbb1f 640 PRINTS PR01180 Arginine decarboxylase signature 549 570 2.3E-63 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 VV93_v1c13940 b8cae31c463ce8452aa2d97de650fe19 402 ProSitePatterns PS00216 Sugar transport proteins signature 1. 66 82 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VV93_v1c13940 b8cae31c463ce8452aa2d97de650fe19 402 SUPERFAMILY SSF103473 6 389 2.09E-53 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c13940 b8cae31c463ce8452aa2d97de650fe19 402 Gene3D G3DSA:1.20.1250.20 6 392 5.9E-48 T 11-10-2018 VV93_v1c13940 b8cae31c463ce8452aa2d97de650fe19 402 Pfam PF07690 Major Facilitator Superfamily 16 352 1.3E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c16870 b6934d3a14092cdb81ae4aedf16ca8b5 104 Gene3D G3DSA:1.10.260.40 4 101 8.4E-18 T 11-10-2018 VV93_v1c16870 b6934d3a14092cdb81ae4aedf16ca8b5 104 SUPERFAMILY SSF47413 43 90 2.25E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c16870 b6934d3a14092cdb81ae4aedf16ca8b5 104 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 24 101 3.1E-8 T 11-10-2018 IPR032758 Antitoxin MqsA/HigA-2 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 SMART SM00260 11 147 4.1E-18 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 Gene3D G3DSA:2.30.30.40 17 141 3.2E-24 T 11-10-2018 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 SUPERFAMILY SSF52172 171 293 4.98E-21 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 PIRSF PIRSF002867 1 298 3.2E-87 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 Gene3D G3DSA:2.40.50.180 31 146 3.2E-24 T 11-10-2018 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 SMART SM00448 173 290 1.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 Gene3D G3DSA:3.40.50.2300 163 302 1.5E-21 T 11-10-2018 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 Pfam PF00072 Response regulator receiver domain 175 289 7.2E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 Pfam PF01584 CheW-like domain 14 149 3.2E-30 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c34150 bc76da75efb030760eba6f7c07672174 307 SUPERFAMILY SSF50341 11 152 1.57E-29 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 276 475 30.322 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 SUPERFAMILY SSF51366 278 473 1.44E-56 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 21 275 34.971 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 SUPERFAMILY SSF51366 19 272 1.18E-79 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 68 86 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 278 469 3.1E-54 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Gene3D G3DSA:3.20.20.70 277 469 9.9E-178 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Gene3D G3DSA:3.20.20.70 26 276 9.9E-178 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c11360 4d7c07104bb3ef956e42cf330d3f52a0 475 Pfam PF00218 Indole-3-glycerol phosphate synthase 23 272 1.6E-96 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 Gene3D G3DSA:1.10.10.200 17 78 1.1E-16 T 11-10-2018 IPR017856 Integrase-like, N-terminal VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 238 27.93 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 Pfam PF01709 Transcriptional regulator 5 236 2.0E-73 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 Gene3D G3DSA:3.30.70.980 83 235 3.6E-45 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 Gene3D G3DSA:3.30.70.980 131 202 3.6E-45 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c30210 2ca90e5da4db8d4b44b7104944d393c1 238 SUPERFAMILY SSF75625 1 237 9.16E-77 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 Pfam PF00990 Diguanylate cyclase, GGDEF domain 479 635 3.5E-31 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SUPERFAMILY SSF55073 483 636 4.63E-33 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00267 466 639 4.3E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SUPERFAMILY SSF48452 93 209 1.97E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 291 324 49.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 133 166 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 93 126 61.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 174 207 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 331 364 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 251 284 0.0023 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SMART SM00028 211 244 55.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SUPERFAMILY SSF48452 176 321 5.31E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 SUPERFAMILY SSF48452 290 425 9.1E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 Gene3D G3DSA:1.25.40.10 94 287 2.6E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 Gene3D G3DSA:1.25.40.10 288 461 6.1E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 476 636 1.0E-32 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 Gene3D G3DSA:3.30.70.270 469 638 1.8E-37 T 11-10-2018 VV93_v1c14480 d98c11bd6d4558a993c2f495163f0376 644 Pfam PF13424 Tetratricopeptide repeat 213 283 3.6E-10 T 11-10-2018 VV93_v1c43980 94d571fcbbd72e07cb0cb1c2f13cce46 204 SMART SM00479 6 173 5.7E-43 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c43980 94d571fcbbd72e07cb0cb1c2f13cce46 204 SUPERFAMILY SSF53098 2 176 4.0E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c43980 94d571fcbbd72e07cb0cb1c2f13cce46 204 Gene3D G3DSA:3.30.420.10 2 175 9.8E-49 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c43980 94d571fcbbd72e07cb0cb1c2f13cce46 204 Pfam PF00929 Exonuclease 8 163 2.3E-31 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c43980 94d571fcbbd72e07cb0cb1c2f13cce46 204 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 7 180 1.8E-28 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c37630 c2d8466bb463258b86ab42e80c2c8402 225 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c37630 c2d8466bb463258b86ab42e80c2c8402 225 SUPERFAMILY SSF52540 6 224 1.18E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37630 c2d8466bb463258b86ab42e80c2c8402 225 SMART SM00382 34 220 2.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c37630 c2d8466bb463258b86ab42e80c2c8402 225 Gene3D G3DSA:3.40.50.300 3 225 6.3E-69 T 11-10-2018 VV93_v1c37630 c2d8466bb463258b86ab42e80c2c8402 225 Pfam PF00005 ABC transporter 25 171 1.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c07450 c16d398435becc69fac219bd302b9b38 148 SUPERFAMILY SSF53098 3 144 3.79E-34 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c07450 c16d398435becc69fac219bd302b9b38 148 Gene3D G3DSA:3.30.420.10 1 147 1.1E-38 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c07450 c16d398435becc69fac219bd302b9b38 148 Pfam PF00075 RNase H 3 143 1.6E-27 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VV93_v1c04480 4325f0d0ab3f1b0d6896cf67614b17bf 776 Pfam PF04453 Organic solvent tolerance protein 295 677 3.5E-111 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 VV93_v1c04480 4325f0d0ab3f1b0d6896cf67614b17bf 776 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 748 19.8 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 VV93_v1c04480 4325f0d0ab3f1b0d6896cf67614b17bf 776 Gene3D G3DSA:2.60.450.10 45 96 7.4E-7 T 11-10-2018 VV93_v1c04480 4325f0d0ab3f1b0d6896cf67614b17bf 776 Pfam PF03968 OstA-like protein 56 187 5.4E-21 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 PRINTS PR01270 Histone deacetylase superfamily signature 158 173 4.7E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 PRINTS PR01270 Histone deacetylase superfamily signature 232 242 4.7E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 PRINTS PR01270 Histone deacetylase superfamily signature 124 147 4.7E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 Gene3D G3DSA:3.40.800.20 2 304 9.1E-62 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 SUPERFAMILY SSF52768 2 297 1.68E-78 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily VV93_v1c10740 5c482ff75f8b0116fe940d94644b8139 312 Pfam PF00850 Histone deacetylase domain 44 289 1.4E-45 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 Gene3D G3DSA:2.40.10.240 64 163 9.5E-118 T 11-10-2018 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 Pfam PF02547 Queuosine biosynthesis protein 3 345 1.9E-133 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 346 47.096 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 345 3.0E-158 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 Gene3D G3DSA:3.40.1780.10 14 345 9.5E-118 T 11-10-2018 VV93_v1c06910 e04cda9671127b979f2c8dcdb80da269 350 SUPERFAMILY SSF111337 1 345 8.89E-138 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 SMART SM00729 43 255 3.3E-41 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 SUPERFAMILY SSF102114 5 310 5.89E-89 T 11-10-2018 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.983 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 6.4E-21 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 Gene3D G3DSA:3.20.20.70 4 315 2.4E-133 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 SMART SM00876 220 312 5.6E-46 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 3.5E-126 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 Pfam PF04055 Radical SAM superfamily 50 199 2.8E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c12410 5549cd5f41806c96e87e137da408b16b 350 PIRSF PIRSF001619 1 319 2.9E-139 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 11-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 Gene3D G3DSA:3.40.190.80 200 337 8.6E-60 T 11-10-2018 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 SUPERFAMILY SSF56655 3 331 4.65E-114 T 11-10-2018 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PIRSF PIRSF500210 1 336 2.0E-127 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 333 42.886 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 2.6E-76 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 Gene3D G3DSA:3.30.540.10 4 198 4.6E-76 T 11-10-2018 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 PIRSF PIRSF000904 1 337 9.2E-125 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04000 1802912bed60b58f05ab43f4128315c8 338 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 197 1.0E-77 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 SUPERFAMILY SSF53850 29 330 8.16E-66 T 11-10-2018 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 Pfam PF13343 Bacterial extracellular solute-binding protein 81 297 7.7E-20 T 11-10-2018 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 Gene3D G3DSA:3.40.190.10 131 330 4.0E-119 T 11-10-2018 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 26 329 8.1E-143 T 11-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 19 334 1.1E-148 T 11-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 VV93_v1c04030 f7f23c82b1e9650728b73e93e06df9b4 335 Gene3D G3DSA:3.40.190.10 31 305 4.0E-119 T 11-10-2018 VV93_v1c29770 e31540dde49f246c735e61da66b4f2e4 156 SUPERFAMILY SSF81573 63 121 1.57E-14 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily VV93_v1c29770 e31540dde49f246c735e61da66b4f2e4 156 Gene3D G3DSA:1.20.5.620 62 122 7.7E-22 T 11-10-2018 VV93_v1c29770 e31540dde49f246c735e61da66b4f2e4 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.448 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VV93_v1c29770 e31540dde49f246c735e61da66b4f2e4 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 4.9E-59 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 VV93_v1c29770 e31540dde49f246c735e61da66b4f2e4 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 3.9E-36 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 Gene3D G3DSA:3.40.50.720 1 126 3.3E-28 T 11-10-2018 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 131 220 2.6E-7 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 Gene3D G3DSA:3.30.360.10 127 345 1.6E-40 T 11-10-2018 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 1.3E-21 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 SUPERFAMILY SSF55347 130 321 1.96E-27 T 11-10-2018 VV93_v1c02940 1f415476d2ab6e9d1a1e1ded4e8fbee8 345 SUPERFAMILY SSF51735 2 148 1.38E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 400 2.2E-123 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 Gene3D G3DSA:3.40.47.10 127 398 1.1E-133 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 Pfam PF00108 Thiolase, N-terminal domain 6 259 3.7E-84 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 SUPERFAMILY SSF53901 5 268 5.15E-76 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 Gene3D G3DSA:3.40.47.10 7 274 1.1E-133 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 PIRSF PIRSF000429 1 403 2.9E-109 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 SUPERFAMILY SSF53901 269 401 1.26E-32 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 Pfam PF02803 Thiolase, C-terminal domain 269 401 2.1E-34 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VV93_v1c39850 a2ba39e507b60524e1e1b8e8b8e7f5af 405 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 302 309 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 Gene3D G3DSA:3.30.1340.10 291 378 8.5E-27 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 Gene3D G3DSA:3.40.930.10 1 142 1.3E-39 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 SUPERFAMILY SSF55804 145 276 8.11E-16 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 SUPERFAMILY SSF55594 294 379 2.75E-23 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 SUPERFAMILY SSF55804 4 141 2.09E-38 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 PRINTS PR00107 Phosphocarrier protein signature 302 318 5.5E-16 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 PRINTS PR00107 Phosphocarrier protein signature 330 345 5.5E-16 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 PRINTS PR00107 Phosphocarrier protein signature 345 362 5.5E-16 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 140 1.7E-31 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 Pfam PF00381 PTS HPr component phosphorylation site 294 373 5.2E-25 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c37030 b66da0cf670f97fffdc0cf8bb7902427 380 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 294 373 1.9E-22 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c26790 4b681d96943e8c39890817fa8f4503c5 587 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 387 576 7.6E-64 T 11-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal VV93_v1c26790 4b681d96943e8c39890817fa8f4503c5 587 Pfam PF04932 O-Antigen ligase 221 366 7.2E-15 T 11-10-2018 IPR007016 O-antigen ligase-related VV93_v1c26790 4b681d96943e8c39890817fa8f4503c5 587 Pfam PF15864 Protein glycosylation ligase 174 199 2.5E-11 T 11-10-2018 IPR031726 Protein glycosylation ligase domain VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 Gene3D G3DSA:3.100.10.10 70 144 5.1E-13 T 11-10-2018 VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.018 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 3.2E-31 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 SUPERFAMILY SSF52080 4 143 4.71E-46 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 5.6E-51 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03650 53cb1432ef5b20470731faa13e159d32 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 11-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 348 4.3E-47 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 SUPERFAMILY SSF55073 196 351 1.8E-49 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 190 351 4.9E-50 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 Pfam PF13185 GAF domain 44 174 1.3E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 SUPERFAMILY SSF55781 36 185 2.4E-20 T 11-10-2018 VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 Gene3D G3DSA:3.30.450.40 33 187 1.3E-19 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 SMART SM00267 181 352 6.8E-60 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 Gene3D G3DSA:3.30.70.270 188 354 3.7E-56 T 11-10-2018 VV93_v1c32270 23f8c31d533f4f648176425d6f65e746 357 SMART SM00065 44 188 1.8E-12 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 SMART SM00862 158 234 3.4E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 Pfam PF00072 Response regulator receiver domain 5 113 3.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 234 2.1E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 SMART SM00448 3 113 6.7E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 Gene3D G3DSA:3.40.50.2300 1 136 2.7E-33 T 11-10-2018 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 SUPERFAMILY SSF46894 133 235 6.24E-27 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 SUPERFAMILY SSF52172 2 123 1.99E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c20150 6851d7110dd52664c799cabd947f4b3d 237 Gene3D G3DSA:1.10.10.10 137 237 1.3E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 Gene3D G3DSA:2.60.98.20 154 315 2.7E-23 T 11-10-2018 IPR037058 Flagellar hook protein FlgE superfamily VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 Pfam PF00460 Flagella basal body rod protein 3 32 7.2E-11 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 416 2.3E-98 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 355 433 8.4E-16 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 8 28 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 PRINTS PR01005 Flagellar hook-associated protein signature 8 31 6.4E-5 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 PRINTS PR01005 Flagellar hook-associated protein signature 239 261 6.4E-5 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 SUPERFAMILY SSF117143 78 395 1.03E-72 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VV93_v1c08910 89b4c4d2f3aff6674ee41226f69378be 434 Pfam PF07559 Flagellar basal body protein FlaE 181 314 8.3E-24 T 11-10-2018 IPR011491 Flagellar hook protein FlgE VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 379 7.6E-199 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.375 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 PIRSF PIRSF000497 1 381 4.3E-175 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 3.6E-46 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 SUPERFAMILY SSF55973 233 382 1.53E-70 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 3.5E-43 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Gene3D G3DSA:3.30.300.10 11 270 7.5E-180 T 11-10-2018 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 SUPERFAMILY SSF55973 3 109 1.61E-47 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Gene3D G3DSA:3.30.300.10 103 372 7.5E-180 T 11-10-2018 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Gene3D G3DSA:3.30.300.10 5 233 7.5E-180 T 11-10-2018 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 SUPERFAMILY SSF55973 111 232 1.26E-52 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c25690 e302b638d54fd031d9662cacf5f03309 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 369 6.1E-69 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 SUPERFAMILY SSF53720 14 497 8.64E-164 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 Gene3D G3DSA:3.40.309.10 270 501 1.6E-75 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 Pfam PF00171 Aldehyde dehydrogenase family 27 493 2.3E-167 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c42520 d92d48e179afe1c064e85fad0dd4811d 506 Gene3D G3DSA:3.40.605.10 11 269 7.8E-90 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 SUPERFAMILY SSF52540 280 513 5.96E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 1 515 2.1E-179 T 11-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 SUPERFAMILY SSF90123 2 271 8.37E-29 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 Gene3D G3DSA:3.40.50.300 282 523 8.3E-69 T 11-10-2018 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 SMART SM00382 315 510 3.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 Gene3D G3DSA:1.20.1560.10 1 274 2.5E-22 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 Pfam PF00005 ABC transporter 307 452 1.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33720 e250deeccf15e3e3534231c576867098 529 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c28080 e2b3f25c8318388c602546599d0109e8 471 Pfam PF00939 Sodium:sulfate symporter transmembrane region 8 465 7.0E-48 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c28080 e2b3f25c8318388c602546599d0109e8 471 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 36 466 7.0E-81 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SUPERFAMILY SSF55874 196 347 4.19E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Pfam PF00989 PAS fold 8 109 2.8E-12 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SUPERFAMILY SSF55785 8 101 5.71E-9 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 2.4E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 189 2.2E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Gene3D G3DSA:1.10.287.130 113 190 1.2E-13 T 11-10-2018 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Gene3D G3DSA:3.30.565.10 191 348 4.9E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 329 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 347 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 296 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SMART SM00091 4 72 8.9E-8 T 11-10-2018 IPR000014 PAS domain VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SMART SM00387 233 348 7.2E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SUPERFAMILY SSF47384 125 190 1.67E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 Gene3D G3DSA:3.30.450.20 2 112 2.4E-27 T 11-10-2018 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 SMART SM00388 129 194 2.2E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c01820 e85feb7760f825904d15345c060e9fc7 348 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 120 8.3E-6 T 11-10-2018 IPR000014 PAS domain VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 6 259 2.2E-117 T 11-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 SUPERFAMILY SSF56784 6 260 2.34E-53 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 205 3.3E-9 T 11-10-2018 VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 Gene3D G3DSA:1.10.150.240 24 102 4.7E-96 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 Gene3D G3DSA:3.40.50.1000 8 271 4.7E-96 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 73 205 6.0E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c34550 87137d2235c9d43a3d0270638e44ad23 271 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 271 141.224 T 11-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 SUPERFAMILY SSF50465 298 393 3.17E-35 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VV93_v1c27570 6491a1343856e55db46db705efaef596 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 1.3E-230 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Gene3D G3DSA:3.40.50.300 1 203 2.4E-69 T 11-10-2018 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Gene3D G3DSA:2.40.30.10 206 334 3.3E-52 T 11-10-2018 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 7.0E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c27570 6491a1343856e55db46db705efaef596 394 SUPERFAMILY SSF50447 205 301 5.11E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Gene3D G3DSA:2.40.30.10 338 393 5.9E-29 T 11-10-2018 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 SUPERFAMILY SSF52540 6 219 3.86E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27570 6491a1343856e55db46db705efaef596 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 9.4E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.4E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.346 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c27570 6491a1343856e55db46db705efaef596 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 4.5E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 Pfam PF13614 AAA domain 538 651 1.6E-11 T 11-10-2018 IPR025669 AAA domain VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 509 712 5.9E-51 T 11-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 Pfam PF13807 G-rich domain on putative tyrosine kinase 370 450 1.2E-34 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 SUPERFAMILY SSF52540 522 706 9.58E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 Gene3D G3DSA:3.40.50.300 444 721 2.7E-77 T 11-10-2018 VV93_v1c03230 7dce8687e69df9774e6d0bb1da7ab8cd 722 Pfam PF02706 Chain length determinant protein 15 107 6.6E-21 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 VV93_v1c34060 31d7ec8c726a491eb709bcafa6000406 343 SUPERFAMILY SSF81345 6 337 1.02E-79 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c34060 31d7ec8c726a491eb709bcafa6000406 343 Pfam PF01032 FecCD transport family 19 336 3.7E-86 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c34060 31d7ec8c726a491eb709bcafa6000406 343 Gene3D G3DSA:1.10.3470.10 5 342 7.9E-101 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 Pfam PF03466 LysR substrate binding domain 107 305 1.6E-27 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 SUPERFAMILY SSF53850 110 308 4.52E-30 T 11-10-2018 VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 SUPERFAMILY SSF46785 22 105 7.26E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 Gene3D G3DSA:1.10.10.10 22 106 3.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 82 5.3E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c30230 f816d986c2d71e5b98d2d020a054f4b6 314 Gene3D G3DSA:3.40.190.290 110 305 3.5E-35 T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 Pfam PF13377 Periplasmic binding protein-like domain 168 330 1.6E-33 T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 Gene3D G3DSA:1.10.260.40 1 59 7.9E-21 T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 Gene3D G3DSA:3.40.50.2300 160 289 3.6E-68 T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 SUPERFAMILY SSF47413 1 59 9.38E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 SUPERFAMILY SSF53822 61 333 2.16E-79 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 Gene3D G3DSA:3.40.50.2300 60 303 3.6E-68 T 11-10-2018 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.9E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31570 4715cbdc408b2002ced0dca0e88e2825 335 SMART SM00354 1 71 5.4E-30 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 Gene3D G3DSA:1.10.10.10 1 74 2.5E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 8.4E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 8.4E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 8.4E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 8.4E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 SUPERFAMILY SSF55252 82 151 2.62E-19 T 11-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 147 2.2E-21 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 59.387 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 10 151 3.4E-43 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 2.3E-23 T 11-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 Gene3D G3DSA:3.30.1360.40 75 156 2.4E-35 T 11-10-2018 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 129 2.0E-16 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 VV93_v1c04340 c061b19b1dea93d1ccf3d8deb46dc635 156 SUPERFAMILY SSF46785 4 77 1.5E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 Gene3D G3DSA:1.10.510.10 60 258 1.6E-124 T 11-10-2018 VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 Gene3D G3DSA:1.20.1270.170 149 307 1.6E-124 T 11-10-2018 VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 SUPERFAMILY SSF56112 6 328 1.18E-90 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 Pfam PF01636 Phosphotransferase enzyme family 34 253 3.2E-45 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 Gene3D G3DSA:3.30.200.70 13 108 1.6E-124 T 11-10-2018 VV93_v1c29570 34f8b8512b51f00de2a2b68bbdb55d47 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 46.769 T 11-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Gene3D G3DSA:3.20.20.80 330 620 1.5E-123 T 11-10-2018 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Hamap MF_01687 Beta-galactosidase [lacZ]. 2 1029 17.022 T 11-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Gene3D G3DSA:2.70.98.10 734 1028 5.9E-93 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Gene3D G3DSA:2.60.120.260 7 216 7.1E-82 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 443 457 - T 11-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Pfam PF02929 Beta galactosidase small chain 757 1025 7.7E-65 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SUPERFAMILY SSF51445 330 618 3.44E-99 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Pfam PF00703 Glycosyl hydrolases family 2 219 329 2.3E-14 T 11-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SUPERFAMILY SSF49785 11 215 5.67E-65 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Pfam PF16353 Domain of unknown function(DUF4981) 638 723 1.4E-19 T 11-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 48 215 7.7E-55 T 11-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SUPERFAMILY SSF49303 219 329 3.17E-22 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SUPERFAMILY SSF49303 633 727 1.25E-25 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 PRINTS PR00132 Glycosyl hydrolase family 2 signature 340 354 3.2E-38 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 PRINTS PR00132 Glycosyl hydrolase family 2 signature 527 542 3.2E-38 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 PRINTS PR00132 Glycosyl hydrolase family 2 signature 371 389 3.2E-38 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 PRINTS PR00132 Glycosyl hydrolase family 2 signature 443 458 3.2E-38 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 PRINTS PR00132 Glycosyl hydrolase family 2 signature 143 158 3.2E-38 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Gene3D G3DSA:2.60.40.10 625 729 2.1E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Gene3D G3DSA:2.60.40.10 218 329 3.5E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 331 623 8.2E-111 T 11-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SMART SM01038 753 1027 3.3E-99 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c31610 898f2d9dd93778207e605785f775a4a1 1031 SUPERFAMILY SSF74650 737 1028 4.39E-90 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Pfam PF00563 EAL domain 424 657 2.6E-56 T 11-10-2018 IPR001633 EAL domain VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Gene3D G3DSA:3.10.580.10 680 817 3.0E-13 T 11-10-2018 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SMART SM00091 127 193 2.1E-5 T 11-10-2018 IPR000014 PAS domain VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 127 239 1.4E-7 T 11-10-2018 IPR000014 PAS domain VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SUPERFAMILY SSF141868 422 666 8.76E-65 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Gene3D G3DSA:3.30.450.20 118 237 1.3E-16 T 11-10-2018 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SUPERFAMILY SSF55785 126 235 1.24E-14 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Pfam PF00571 CBS domain 698 735 0.0071 T 11-10-2018 IPR000644 CBS domain VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Pfam PF00571 CBS domain 764 817 9.0E-4 T 11-10-2018 IPR000644 CBS domain VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SUPERFAMILY SSF54631 690 817 2.02E-13 T 11-10-2018 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Pfam PF00989 PAS fold 129 224 4.4E-5 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Gene3D G3DSA:3.20.20.450 414 672 3.1E-67 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SUPERFAMILY SSF55073 254 406 3.61E-5 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 Gene3D G3DSA:3.30.70.270 251 410 2.9E-6 T 11-10-2018 VV93_v1c19030 3126d14f67ca2e9ccac2972a59083852 822 SMART SM00052 415 662 5.7E-60 T 11-10-2018 IPR001633 EAL domain VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 Gene3D G3DSA:3.90.10.10 29 142 8.4E-6 T 11-10-2018 VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 Pfam PF13435 Cytochrome c554 and c-prime 35 88 9.3E-4 T 11-10-2018 IPR023155 Cytochrome c-552/4 VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 152 187 5.7E-5 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 43 189 6.6E-66 T 11-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 SUPERFAMILY SSF48695 14 189 1.11E-28 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c11700 a712626be10fbb20ed4459aadde61a9c 195 Gene3D G3DSA:3.90.10.10 143 194 1.4E-5 T 11-10-2018 VV93_v1c29250 d29fc3e5cc8ff790a025d86aa8faef16 444 Gene3D G3DSA:3.20.20.70 203 419 2.6E-53 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c29250 d29fc3e5cc8ff790a025d86aa8faef16 444 SUPERFAMILY SSF51391 211 417 2.09E-60 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VV93_v1c29250 d29fc3e5cc8ff790a025d86aa8faef16 444 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 224 411 2.6E-44 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VV93_v1c29250 d29fc3e5cc8ff790a025d86aa8faef16 444 Pfam PF02581 Thiamine monophosphate synthase 222 400 3.0E-54 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VV93_v1c29250 d29fc3e5cc8ff790a025d86aa8faef16 444 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 189 418 19.107 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Pfam PF17385 Lacto-N-biose phosphorylase central domain 444 669 8.4E-79 T 11-10-2018 IPR035363 Lacto-N-biose phosphorylase, central domain VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Gene3D G3DSA:3.20.20.80 9 432 1.9E-179 T 11-10-2018 VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Gene3D G3DSA:3.40.50.880 441 672 6.4E-74 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Pfam PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain 9 439 9.6E-180 T 11-10-2018 IPR035080 Lacto-N-biose phosphorylase-like, N-terminal TIM barrel domain VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 SUPERFAMILY SSF52317 475 665 3.43E-18 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Gene3D G3DSA:2.60.40.1180 673 728 2.8E-7 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 TIGRFAM TIGR02336 TIGR02336: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase 6 727 0.0 T 11-10-2018 IPR012711 Lacto-N-biose phosphorylase/D-galactosyl-beta-1->4-L-rhamnose phosphorylase GO:0004645 VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Pfam PF17386 Lacto-N-biose phosphorylase C-terminal domain 674 726 5.4E-17 T 11-10-2018 IPR035356 Lacto-N-biose phosphorylase, C-terminal domain VV93_v1c44840 b642b1a1d37c208be30e37518f5c39de 728 Gene3D G3DSA:2.60.40.10 76 180 1.9E-179 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c09960 ce8a9802ee46b940928b5ec6959dfe22 512 Gene3D G3DSA:1.20.200.10 202 509 1.4E-103 T 11-10-2018 VV93_v1c09960 ce8a9802ee46b940928b5ec6959dfe22 512 SUPERFAMILY SSF48557 4 509 3.53E-172 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 VV93_v1c09960 ce8a9802ee46b940928b5ec6959dfe22 512 Gene3D G3DSA:1.10.275.10 7 201 2.1E-55 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal VV93_v1c09960 ce8a9802ee46b940928b5ec6959dfe22 512 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 143 159 - T 11-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 VV93_v1c09960 ce8a9802ee46b940928b5ec6959dfe22 512 Pfam PF00221 Aromatic amino acid lyase 14 464 1.9E-162 T 11-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 157 4.3E-24 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 SUPERFAMILY SSF47789 252 326 1.44E-25 T 11-10-2018 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 SMART SM00662 23 235 1.0E-103 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 SUPERFAMILY SSF56553 53 179 1.73E-40 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 317 1.2E-111 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 246 309 7.1E-24 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Gene3D G3DSA:2.170.120.12 53 178 1.1E-83 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 257 330 2.0E-36 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Gene3D G3DSA:3.30.1360.10 17 229 1.1E-83 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Gene3D G3DSA:1.10.150.20 245 330 1.4E-38 T 11-10-2018 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 SUPERFAMILY SSF55257 7 234 3.53E-30 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 229 2.5E-23 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c03710 4620ebc6b5a5872619646f6a3aaac60a 330 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 318 34.681 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 Pfam PF02436 Conserved carboxylase domain 292 492 1.6E-57 T 11-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 SUPERFAMILY SSF89000 297 462 5.49E-50 T 11-10-2018 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 Pfam PF00364 Biotin-requiring enzyme 528 592 9.5E-18 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 550 567 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 7 588 4.1E-267 T 11-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 Gene3D G3DSA:2.40.50.100 519 594 4.9E-24 T 11-10-2018 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 Pfam PF00682 HMGL-like 6 270 1.1E-59 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 SUPERFAMILY SSF51569 1 300 5.86E-90 T 11-10-2018 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 Gene3D G3DSA:3.20.20.70 1 464 3.5E-173 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c25100 7f30486e8f01dcca314264a411a9bb22 594 SUPERFAMILY SSF51230 519 593 2.49E-21 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Gene3D G3DSA:2.70.70.10 267 396 3.1E-80 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Pfam PF08525 Opacity-associated protein A N-terminal motif 4 32 6.5E-6 T 11-10-2018 IPR013731 Opacity-associated protein A, N-terminal VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Gene3D G3DSA:3.10.450.350 174 409 3.1E-80 T 11-10-2018 VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Gene3D G3DSA:3.10.450.350 70 161 1.3E-12 T 11-10-2018 VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Pfam PF01551 Peptidase family M23 296 390 8.9E-31 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 Pfam PF04225 Opacity-associated protein A LysM-like domain 73 153 6.1E-5 T 11-10-2018 IPR007340 Opacity-associated protein A VV93_v1c24390 c60e660b2b867f13c6c9ba45b220cb39 430 SUPERFAMILY SSF51261 146 391 6.28E-70 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c14320 30716be821a368a95f6de924b70da162 323 SUPERFAMILY SSF53850 111 289 1.71E-8 T 11-10-2018 VV93_v1c14320 30716be821a368a95f6de924b70da162 323 Gene3D G3DSA:3.40.190.10 123 249 8.4E-61 T 11-10-2018 VV93_v1c14320 30716be821a368a95f6de924b70da162 323 Gene3D G3DSA:3.40.190.150 29 314 8.4E-61 T 11-10-2018 VV93_v1c14320 30716be821a368a95f6de924b70da162 323 PIRSF PIRSF017082 2 323 3.3E-85 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 VV93_v1c14320 30716be821a368a95f6de924b70da162 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 66 320 9.8E-26 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 VV93_v1c21610 3bd104fc3fb8d285c6c3bdc4c2539fd6 356 Pfam PF01584 CheW-like domain 210 342 5.0E-15 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21610 3bd104fc3fb8d285c6c3bdc4c2539fd6 356 SMART SM00260 206 340 4.0E-4 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21610 3bd104fc3fb8d285c6c3bdc4c2539fd6 356 SUPERFAMILY SSF50341 209 343 1.7E-13 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c21610 3bd104fc3fb8d285c6c3bdc4c2539fd6 356 PIRSF PIRSF020479 6 355 3.0E-153 T 11-10-2018 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like VV93_v1c39150 1e643c032e2f4ef3a7b90becec69f7e6 113 SUPERFAMILY SSF160424 1 102 1.7E-14 T 11-10-2018 IPR036170 Probable antitoxin YezG superfamily VV93_v1c39150 1e643c032e2f4ef3a7b90becec69f7e6 113 Gene3D G3DSA:3.30.500.20 1 102 4.1E-7 T 11-10-2018 VV93_v1c42640 e5cb31dc7ddceb2ed1f93afb5c8a5e74 354 Gene3D G3DSA:3.30.360.10 136 337 1.5E-117 T 11-10-2018 VV93_v1c42640 e5cb31dc7ddceb2ed1f93afb5c8a5e74 354 Gene3D G3DSA:3.40.50.720 14 323 1.5E-117 T 11-10-2018 VV93_v1c42640 e5cb31dc7ddceb2ed1f93afb5c8a5e74 354 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 211 1.1E-12 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 VV93_v1c42640 e5cb31dc7ddceb2ed1f93afb5c8a5e74 354 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 15 130 1.3E-19 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VV93_v1c42640 e5cb31dc7ddceb2ed1f93afb5c8a5e74 354 SUPERFAMILY SSF51735 9 211 7.88E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c31600 ce1c89f0a1b117e0563400efc1e32e37 324 Pfam PF13407 Periplasmic binding protein domain 27 296 8.6E-57 T 11-10-2018 IPR025997 Periplasmic binding protein VV93_v1c31600 ce1c89f0a1b117e0563400efc1e32e37 324 SUPERFAMILY SSF53822 23 323 1.56E-76 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c31600 ce1c89f0a1b117e0563400efc1e32e37 324 Gene3D G3DSA:3.40.50.2300 27 299 3.7E-111 T 11-10-2018 VV93_v1c31600 ce1c89f0a1b117e0563400efc1e32e37 324 Gene3D G3DSA:3.40.50.2300 132 276 3.7E-111 T 11-10-2018 VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 Pfam PF13727 CoA-binding domain 69 238 2.1E-11 T 11-10-2018 VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 Pfam PF02719 Polysaccharide biosynthesis protein 283 580 2.2E-129 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 SUPERFAMILY SSF51735 145 270 2.87E-16 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 Gene3D G3DSA:3.40.50.720 143 264 7.4E-32 T 11-10-2018 VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 SUPERFAMILY SSF51735 280 559 5.72E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03380 52ea83b0c841680237bc7b38fbc9f054 650 Gene3D G3DSA:3.40.50.720 278 616 3.1E-114 T 11-10-2018 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 507 1.1E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:1.20.120.160 665 780 1.5E-27 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SMART SM00091 155 221 2.5E-7 T 11-10-2018 IPR000014 PAS domain VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:3.40.50.2300 523 664 1.7E-27 T 11-10-2018 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:3.30.565.10 348 513 6.6E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Pfam PF08448 PAS fold 162 271 4.6E-18 T 11-10-2018 IPR013656 PAS fold-4 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Pfam PF00072 Response regulator receiver domain 529 638 1.1E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SUPERFAMILY SSF55785 140 267 2.44E-25 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:1.10.287.970 1 89 3.6E-39 T 11-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:1.10.287.130 268 345 3.3E-22 T 11-10-2018 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Pfam PF01627 Hpt domain 691 764 1.5E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Gene3D G3DSA:3.30.450.20 150 267 2.1E-22 T 11-10-2018 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SUPERFAMILY SSF47384 270 347 8.83E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 507 4.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 488 4.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 448 4.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 462 4.0E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SUPERFAMILY SSF47226 666 779 6.93E-28 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 4.7E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 2.2E-18 T 11-10-2018 IPR000014 PAS domain VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 PIRSF PIRSF003182 1 780 0.0 T 11-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SMART SM00387 394 510 1.2E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SUPERFAMILY SSF55874 336 507 1.44E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SMART SM00448 527 638 5.6E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SMART SM00388 282 347 1.9E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SMART SM00073 680 777 5.0E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c05830 19b44a1704536199e3183ae7b2576f2e 780 SUPERFAMILY SSF52172 527 642 3.98E-25 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 Gene3D G3DSA:1.10.10.10 6 96 9.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 4.1E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 Gene3D G3DSA:3.40.190.10 103 313 8.5E-98 T 11-10-2018 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 Gene3D G3DSA:3.40.190.10 177 277 8.5E-98 T 11-10-2018 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 74 6.7E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 SUPERFAMILY SSF53850 101 331 6.12E-41 T 11-10-2018 VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 Pfam PF03466 LysR substrate binding domain 101 302 2.4E-38 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c12320 85860ae5578a07e56ea2c7d8cfb113d1 334 SUPERFAMILY SSF46785 3 123 4.31E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 7.0E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 7.0E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 7.0E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 Gene3D G3DSA:2.40.50.530 1 64 4.7E-17 T 11-10-2018 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 SUPERFAMILY SSF143034 2 63 2.88E-19 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 17.458 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 2.0E-25 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c17030 cd40eb71624e6d3813ba51561564c7cc 64 Pfam PF01632 Ribosomal protein L35 2 61 1.1E-19 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c32660 63be1837df656f166f36ffbff872d9ea 298 SUPERFAMILY SSF103481 40 141 4.84E-10 T 11-10-2018 VV93_v1c32660 63be1837df656f166f36ffbff872d9ea 298 Pfam PF00892 EamA-like transporter family 8 137 4.2E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32660 63be1837df656f166f36ffbff872d9ea 298 Pfam PF00892 EamA-like transporter family 149 279 1.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32660 63be1837df656f166f36ffbff872d9ea 298 SUPERFAMILY SSF103481 190 283 2.22E-15 T 11-10-2018 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.4E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 SMART SM00448 3 116 1.0E-45 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 5.9E-113 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 Gene3D G3DSA:3.40.50.2300 1 126 5.6E-39 T 11-10-2018 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 SUPERFAMILY SSF52172 3 184 1.81E-43 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 SMART SM00862 150 225 2.4E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 Pfam PF00072 Response regulator receiver domain 5 116 7.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c06700 e0b0cdf3ff7666562ac5749d6b266cfe 229 Gene3D G3DSA:1.10.10.10 127 228 1.8E-40 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 SUPERFAMILY SSF52794 385 471 6.45E-25 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 507 645 1.4E-33 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 SUPERFAMILY SSF55804 506 646 7.19E-40 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 Gene3D G3DSA:3.40.930.10 502 648 1.1E-50 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 550 566 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 Gene3D G3DSA:3.40.50.2300 372 475 1.2E-35 T 11-10-2018 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 386 467 5.5E-12 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 1.1E-166 T 11-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 VV93_v1c04730 f22ed5a56bcdd916402f55596642e2ca 650 Pfam PF02378 Phosphotransferase system, EIIC 18 278 6.1E-19 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Gene3D G3DSA:3.30.1360.120 12 236 5.6E-85 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 SUPERFAMILY SSF101790 284 376 1.96E-25 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Pfam PF01571 Aminomethyltransferase folate-binding domain 15 259 4.1E-88 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Gene3D G3DSA:3.30.70.1400 61 144 5.6E-85 T 11-10-2018 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 PIRSF PIRSF006487 1 377 1.3E-80 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 SUPERFAMILY SSF103025 11 286 5.65E-91 T 11-10-2018 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Gene3D G3DSA:2.40.30.110 289 366 1.4E-26 T 11-10-2018 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 273 367 4.2E-21 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 Gene3D G3DSA:4.10.1250.10 238 286 3.1E-21 T 11-10-2018 VV93_v1c36940 10d13a271e17b8f5ced7e073b5b604cd 377 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 11 371 6.1E-108 T 11-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 Gene3D G3DSA:3.40.50.300 26 267 2.0E-83 T 11-10-2018 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 SUPERFAMILY SSF52540 4 266 3.81E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 4.1E-169 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 SMART SM00382 57 228 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 SUPERFAMILY SSF54752 269 325 4.58E-20 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 ProSitePatterns PS00321 recA signature. 213 221 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 Pfam PF00154 recA bacterial DNA recombination protein 7 267 9.3E-143 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 Gene3D G3DSA:3.30.250.10 268 344 3.0E-24 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 Hamap MF_00268 Protein RecA [recA]. 5 329 50.162 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 127 156 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 243 272 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 210 238 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 297 314 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 93 122 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c25160 88557ca0874a0bd8ca92620ce2c5750f 349 PRINTS PR00142 RecA protein signature 165 194 1.7E-83 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 VV93_v1c03590 3f16209064057c8aae87abe0bb031afc 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.0E-24 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03590 3f16209064057c8aae87abe0bb031afc 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.871 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid VV93_v1c03590 3f16209064057c8aae87abe0bb031afc 101 Gene3D G3DSA:4.10.830.10 41 101 8.4E-23 T 11-10-2018 VV93_v1c03590 3f16209064057c8aae87abe0bb031afc 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03590 3f16209064057c8aae87abe0bb031afc 101 SUPERFAMILY SSF57716 2 101 5.99E-37 T 11-10-2018 VV93_v1c37430 686a2b981d424c10eb72f9104fb26ee6 185 SUPERFAMILY SSF82057 117 184 2.56E-20 T 11-10-2018 VV93_v1c37430 686a2b981d424c10eb72f9104fb26ee6 185 Pfam PF03831 PhnA domain 119 184 1.4E-22 T 11-10-2018 IPR013988 PhnA protein, C-terminal VV93_v1c37430 686a2b981d424c10eb72f9104fb26ee6 185 Pfam PF08274 PhnA Zinc-Ribbon 13 52 1.5E-10 T 11-10-2018 IPR013987 PhnA protein, N-terminal VV93_v1c37430 686a2b981d424c10eb72f9104fb26ee6 185 Gene3D G3DSA:2.30.30.40 114 185 3.3E-24 T 11-10-2018 VV93_v1c37430 686a2b981d424c10eb72f9104fb26ee6 185 SMART SM00782 6 52 2.4E-27 T 11-10-2018 IPR013991 PhnA protein N-terminal, proteobacterial VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 PIRSF PIRSF001553 1 289 4.9E-135 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 Pfam PF00549 CoA-ligase 151 270 1.8E-21 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 Pfam PF02629 CoA binding domain 6 99 1.5E-31 T 11-10-2018 IPR003781 CoA-binding GO:0048037 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.437 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 Gene3D G3DSA:3.40.50.720 2 123 4.5E-52 T 11-10-2018 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 SUPERFAMILY SSF51735 1 122 2.89E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.8E-40 T 11-10-2018 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.8E-40 T 11-10-2018 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.8E-40 T 11-10-2018 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.8E-40 T 11-10-2018 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 SMART SM00881 4 100 3.3E-36 T 11-10-2018 IPR003781 CoA-binding GO:0048037 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 SUPERFAMILY SSF52210 123 286 2.88E-56 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 Gene3D G3DSA:3.40.50.261 124 288 1.2E-76 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09580 ad41c838ca80040989c4f0af07907ca5 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 9.9E-147 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c15470 773eb2814f0ba8bcf9654f57c72b3f40 110 SMART SM00530 5 60 1.5E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c15470 773eb2814f0ba8bcf9654f57c72b3f40 110 SUPERFAMILY SSF47413 2 67 5.63E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c15470 773eb2814f0ba8bcf9654f57c72b3f40 110 Pfam PF01381 Helix-turn-helix 6 60 1.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c15470 773eb2814f0ba8bcf9654f57c72b3f40 110 Gene3D G3DSA:1.10.260.40 1 100 2.3E-20 T 11-10-2018 VV93_v1c37880 773eb2814f0ba8bcf9654f57c72b3f40 110 SMART SM00530 5 60 1.5E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c37880 773eb2814f0ba8bcf9654f57c72b3f40 110 SUPERFAMILY SSF47413 2 67 5.63E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c37880 773eb2814f0ba8bcf9654f57c72b3f40 110 Pfam PF01381 Helix-turn-helix 6 60 1.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c37880 773eb2814f0ba8bcf9654f57c72b3f40 110 Gene3D G3DSA:1.10.260.40 1 100 2.3E-20 T 11-10-2018 VV93_v1c17180 e9a7d67e785a84eeb50388bc6adb2d2a 229 Pfam PF10979 Protein of unknown function (DUF2786) 5 42 2.8E-12 T 11-10-2018 IPR024498 Domain of unknown function DUF2786 VV93_v1c17180 e9a7d67e785a84eeb50388bc6adb2d2a 229 PIRSF PIRSF028111 1 229 1.9E-86 T 11-10-2018 IPR016868 Bacteriophage B3, Orf5 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 56 2.8E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 SMART SM00354 9 79 3.8E-26 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 SUPERFAMILY SSF47413 9 67 8.04E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 Pfam PF13377 Periplasmic binding protein-like domain 176 335 5.3E-29 T 11-10-2018 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 SUPERFAMILY SSF53822 67 322 2.57E-55 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 Gene3D G3DSA:3.40.50.2300 167 295 2.9E-66 T 11-10-2018 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 11-10-2018 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 Gene3D G3DSA:3.40.50.2300 70 311 2.9E-66 T 11-10-2018 VV93_v1c00510 a4a006b3a2fd32d24f8da5d51670e603 335 Gene3D G3DSA:1.10.260.40 1 67 8.6E-18 T 11-10-2018 VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 Gene3D G3DSA:3.30.70.270 191 368 1.6E-50 T 11-10-2018 VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 SUPERFAMILY SSF47188 3 131 4.06E-27 T 11-10-2018 IPR035938 Hemerythrin-like superfamily VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 202 366 2.3E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 Pfam PF00990 Diguanylate cyclase, GGDEF domain 207 362 6.6E-43 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 131 2.4E-31 T 11-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 ProSitePatterns PS00550 Hemerythrin family signature. 59 84 - T 11-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 SMART SM00267 195 367 1.1E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 Pfam PF01814 Hemerythrin HHE cation binding domain 13 128 8.3E-9 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 Gene3D G3DSA:1.20.120.50 2 136 3.7E-28 T 11-10-2018 IPR035938 Hemerythrin-like superfamily VV93_v1c17340 9acfd7a767afe3d67080be6afcb6d5e9 371 SUPERFAMILY SSF55073 211 365 1.41E-43 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 Gene3D G3DSA:3.30.1130.10 85 217 1.2E-51 T 11-10-2018 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 216 3.2E-79 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 SUPERFAMILY SSF55620 9 216 4.37E-74 T 11-10-2018 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 Gene3D G3DSA:1.10.286.10 1 84 2.1E-37 T 11-10-2018 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 Pfam PF01227 GTP cyclohydrolase I 38 215 4.5E-64 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VV93_v1c40320 ed3bde2a69dd46226fec60c030b26566 217 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 33.797 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 SUPERFAMILY SSF88946 53 161 1.38E-45 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 PRINTS PR00046 Major sigma-70 factor signature 263 275 6.4E-28 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 PRINTS PR00046 Major sigma-70 factor signature 139 147 6.4E-28 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 PRINTS PR00046 Major sigma-70 factor signature 284 299 6.4E-28 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 PRINTS PR00046 Major sigma-70 factor signature 115 128 6.4E-28 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 PRINTS PR00046 Major sigma-70 factor signature 299 310 6.4E-28 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Pfam PF04539 Sigma-70 region 3 171 244 4.3E-22 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Pfam PF00140 Sigma-70 factor, region 1.2 53 86 4.1E-12 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Pfam PF04542 Sigma-70 region 2 91 160 6.9E-20 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Gene3D G3DSA:1.10.10.10 241 321 7.1E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 15 325 39.499 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 SUPERFAMILY SSF88659 221 320 2.62E-25 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 115 128 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Gene3D G3DSA:1.10.601.10 4 160 2.6E-47 T 11-10-2018 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 46 325 4.6E-138 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 284 310 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 SUPERFAMILY SSF88659 164 237 5.23E-16 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Pfam PF04545 Sigma-70, region 4 259 312 1.1E-17 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 87 313 2.0E-36 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c25190 28b3954ec23348263f172c3373c36b27 330 Gene3D G3DSA:1.10.10.10 164 239 6.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c37420 a3f0a9b026e00934f7ef51ef30212cb9 121 Pfam PF12680 SnoaL-like domain 13 116 9.5E-8 T 11-10-2018 IPR037401 SnoaL-like domain VV93_v1c37420 a3f0a9b026e00934f7ef51ef30212cb9 121 Gene3D G3DSA:3.10.450.50 6 120 6.7E-30 T 11-10-2018 VV93_v1c37420 a3f0a9b026e00934f7ef51ef30212cb9 121 SUPERFAMILY SSF54427 6 119 8.4E-20 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c37420 a3f0a9b026e00934f7ef51ef30212cb9 121 PIRSF PIRSF030561 5 121 2.7E-46 T 11-10-2018 IPR008317 Uncharacterised conserved protein UCP030561 VV93_v1c27690 5af3001a5373deb738f4df1ef0ade305 199 SUPERFAMILY SSF54534 2 140 3.14E-37 T 11-10-2018 VV93_v1c27690 5af3001a5373deb738f4df1ef0ade305 199 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 1.5E-13 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c27690 5af3001a5373deb738f4df1ef0ade305 199 Gene3D G3DSA:3.10.50.40 3 154 1.5E-60 T 11-10-2018 VV93_v1c27690 5af3001a5373deb738f4df1ef0ade305 199 Gene3D G3DSA:2.40.10.330 71 121 1.5E-60 T 11-10-2018 VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 Gene3D G3DSA:3.30.1240.10 85 190 4.9E-79 T 11-10-2018 VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 9 260 4.5E-52 T 11-10-2018 IPR000150 Cof family GO:0016787 VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 260 1.8E-61 T 11-10-2018 VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 233 1.4E-20 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 Gene3D G3DSA:3.40.50.1000 9 260 4.9E-79 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c32500 e116c5fc2220aa97c1496f75239071cf 267 SUPERFAMILY SSF56784 3 264 6.35E-68 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c05870 17363fdcef7a4d56c89a7bf17975f43d 160 SUPERFAMILY SSF89562 1 155 3.14E-47 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VV93_v1c05870 17363fdcef7a4d56c89a7bf17975f43d 160 Pfam PF03737 Aldolase/RraA 5 152 2.9E-42 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VV93_v1c05870 17363fdcef7a4d56c89a7bf17975f43d 160 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 4.1E-71 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 VV93_v1c05870 17363fdcef7a4d56c89a7bf17975f43d 160 Gene3D G3DSA:3.50.30.40 1 160 1.9E-64 T 11-10-2018 VV93_v1c11160 0d4fe8f4d3cda7c2703a0a08dd7b0387 296 Gene3D G3DSA:3.40.50.12300 5 296 4.6E-80 T 11-10-2018 IPR038136 Gluconeogenesis factor superfamily VV93_v1c11160 0d4fe8f4d3cda7c2703a0a08dd7b0387 296 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 9 283 1.3E-103 T 11-10-2018 IPR010119 Gluconeogenesis factor VV93_v1c11160 0d4fe8f4d3cda7c2703a0a08dd7b0387 296 Pfam PF01933 Uncharacterised protein family UPF0052 9 283 2.6E-75 T 11-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 VV93_v1c11160 0d4fe8f4d3cda7c2703a0a08dd7b0387 296 Hamap MF_00973 Gluconeogenesis factor. 5 296 30.879 T 11-10-2018 IPR010119 Gluconeogenesis factor VV93_v1c11160 0d4fe8f4d3cda7c2703a0a08dd7b0387 296 SUPERFAMILY SSF142338 7 290 7.06E-83 T 11-10-2018 VV93_v1c27470 3fba9d6adeda795dfe253e4048d2c9d3 80 Pfam PF06005 Cell division protein ZapB 1 77 6.0E-24 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VV93_v1c27470 3fba9d6adeda795dfe253e4048d2c9d3 80 Gene3D G3DSA:1.20.5.340 1 79 2.0E-28 T 11-10-2018 VV93_v1c27470 3fba9d6adeda795dfe253e4048d2c9d3 80 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 17.654 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 426 6.3E-153 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Gene3D G3DSA:1.10.287.730 143 169 6.2E-13 T 11-10-2018 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Pfam PF01029 NusB family 1 123 4.2E-24 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Gene3D G3DSA:3.40.50.150 228 425 8.4E-70 T 11-10-2018 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Gene3D G3DSA:3.30.70.1170 170 227 4.2E-26 T 11-10-2018 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 SUPERFAMILY SSF53335 139 424 5.63E-79 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 SUPERFAMILY SSF48013 1 146 9.16E-37 T 11-10-2018 IPR035926 NusB-like superfamily VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Pfam PF01189 16S rRNA methyltransferase RsmB/F 238 422 6.9E-69 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 313 324 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 364 380 1.9E-30 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 1.9E-30 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 407 424 1.9E-30 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 314 326 1.9E-30 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 1.9E-30 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase VV93_v1c29490 42a8bc78fc6a0cb7b6ff263c94d4f480 426 Gene3D G3DSA:1.10.940.10 1 142 9.8E-44 T 11-10-2018 IPR035926 NusB-like superfamily VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 1.1E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 1.1E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 1.1E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 2.7E-38 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.224 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 SUPERFAMILY SSF50249 6 83 5.14E-34 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 76 5.0E-39 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 Pfam PF00366 Ribosomal protein S17 10 77 1.0E-34 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03550 be170dc137fffee7266abf9038e75abd 84 Gene3D G3DSA:2.40.50.140 1 84 4.0E-39 T 11-10-2018 VV93_v1c41340 754642920bc6abfe7c84928f20e1ae68 590 Gene3D G3DSA:3.40.50.1820 229 515 4.5E-7 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41340 754642920bc6abfe7c84928f20e1ae68 590 SUPERFAMILY SSF53474 225 526 2.08E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41340 754642920bc6abfe7c84928f20e1ae68 590 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 95 266 5.5E-74 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 VV93_v1c41340 754642920bc6abfe7c84928f20e1ae68 590 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 55 584 1.1E-247 T 11-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 280 295 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 218 231 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Pfam PF02954 Bacterial regulatory protein, Fis family 469 500 1.1E-4 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 SUPERFAMILY SSF52540 193 430 1.13E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 SUPERFAMILY SSF46689 459 507 8.96E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Gene3D G3DSA:3.40.50.300 180 364 2.7E-64 T 11-10-2018 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Gene3D G3DSA:1.10.10.60 456 509 3.6E-8 T 11-10-2018 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 SUPERFAMILY SSF55781 7 166 3.71E-17 T 11-10-2018 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Pfam PF00158 Sigma-54 interaction domain 195 361 8.9E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Gene3D G3DSA:1.10.8.60 365 444 8.5E-16 T 11-10-2018 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 SMART SM00065 21 170 2.0E-4 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 SMART SM00382 214 358 1.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13200 2f5cabd7b9432bf11c97464f4d2758d1 509 Gene3D G3DSA:3.30.450.40 4 174 9.6E-16 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c04200 d2cd6d9e6cbc9d9f12e80b3dc61c383a 185 Pfam PF08282 haloacid dehalogenase-like hydrolase 92 157 1.6E-7 T 11-10-2018 VV93_v1c04200 d2cd6d9e6cbc9d9f12e80b3dc61c383a 185 Gene3D G3DSA:3.40.50.1000 2 185 4.9E-57 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c04200 d2cd6d9e6cbc9d9f12e80b3dc61c383a 185 PIRSF PIRSF006118 10 185 4.9E-75 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c04200 d2cd6d9e6cbc9d9f12e80b3dc61c383a 185 SUPERFAMILY SSF56784 21 178 1.84E-39 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c04200 d2cd6d9e6cbc9d9f12e80b3dc61c383a 185 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 23 174 5.8E-62 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c32460 597ac70aeb0e8cd2a19380858f79b6d9 632 SUPERFAMILY SSF53383 47 593 2.62E-57 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c32460 597ac70aeb0e8cd2a19380858f79b6d9 632 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 299 457 1.5E-5 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VV93_v1c22580 1be204a987af8e5868cbe655c4372e89 104 SUPERFAMILY SSF46626 17 103 1.33E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c22580 1be204a987af8e5868cbe655c4372e89 104 Pfam PF00034 Cytochrome c 30 104 2.6E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c22580 1be204a987af8e5868cbe655c4372e89 104 Gene3D G3DSA:1.10.760.10 23 104 6.7E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.30.1950.10 45 100 2.3E-15 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 101 181 2.3E-15 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF02563 Polysaccharide biosynthesis/export protein 25 96 7.7E-12 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 481 575 3.8E-18 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 577 670 3.5E-18 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 288 377 7.4E-17 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 199 287 1.0E-15 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Gene3D G3DSA:3.10.560.10 386 473 4.8E-13 T 11-10-2018 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 395 445 5.4E-8 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 299 351 6.0E-13 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 494 537 8.1E-6 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 211 252 5.8E-5 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 104 148 1.1E-4 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15060 602fd9afcba9e1ebc2895e4bfed9b2db 699 Pfam PF10531 SLBB domain 589 632 1.4E-9 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 Gene3D G3DSA:1.10.40.50 275 349 5.2E-26 T 11-10-2018 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 75 333 1.6E-89 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 Pfam PF03193 RsgA GTPase 100 275 2.8E-58 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 Gene3D G3DSA:2.40.50.140 36 102 2.1E-20 T 11-10-2018 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 Gene3D G3DSA:3.40.50.300 103 274 1.9E-50 T 11-10-2018 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 41 339 37.653 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VV93_v1c28060 c5f88c1eede8a3baf538eca3e038a6c0 352 SUPERFAMILY SSF52540 114 337 1.41E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 SUPERFAMILY SSF53067 86 393 7.69E-55 T 11-10-2018 VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 Gene3D G3DSA:1.10.10.10 2 81 2.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 Pfam PF00480 ROK family 88 390 2.1E-70 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 SUPERFAMILY SSF46785 10 76 3.45E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 ProSitePatterns PS01125 ROK family signature. 218 245 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 Gene3D G3DSA:3.30.420.40 91 387 2.9E-111 T 11-10-2018 VV93_v1c12080 16ee0057af6f8a2764d582ffddfc4240 405 Gene3D G3DSA:3.30.420.40 208 377 2.9E-111 T 11-10-2018 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 Pfam PF07650 KH domain 227 304 4.3E-21 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 TIGRFAM TIGR00436 era: GTP-binding protein Era 27 299 1.3E-109 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 26 187 1.8E-39 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 Pfam PF01926 50S ribosome-binding GTPase 29 143 1.2E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 SUPERFAMILY SSF52540 29 224 7.02E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 Gene3D G3DSA:3.40.50.300 20 202 1.1E-52 T 11-10-2018 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 Gene3D G3DSA:3.30.300.20 204 318 2.8E-42 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 SUPERFAMILY SSF54814 200 316 3.6E-41 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VV93_v1c25390 6f83b778f4debc145b7a4941276db046 320 Hamap MF_00367 GTPase Era [era]. 24 316 35.717 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 SUPERFAMILY SSF90123 29 344 1.11E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 Gene3D G3DSA:3.40.50.300 351 604 9.0E-93 T 11-10-2018 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 Gene3D G3DSA:1.20.1560.10 11 340 1.6E-24 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 SMART SM00382 386 577 1.1E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 Pfam PF00664 ABC transporter transmembrane region 41 308 6.4E-17 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 SUPERFAMILY SSF52540 351 601 8.04E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44820 79a70362da1d93524b2fc31c43e358c8 619 Pfam PF00005 ABC transporter 378 531 7.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c38830 785c5e019ee9e074b9bcee5badf50844 225 SUPERFAMILY SSF53335 9 100 2.36E-10 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c38830 785c5e019ee9e074b9bcee5badf50844 225 Pfam PF12847 Methyltransferase domain 3 159 3.4E-28 T 11-10-2018 VV93_v1c38830 785c5e019ee9e074b9bcee5badf50844 225 Gene3D G3DSA:3.40.50.150 2 165 1.2E-47 T 11-10-2018 VV93_v1c38830 785c5e019ee9e074b9bcee5badf50844 225 PIRSF PIRSF028234 1 225 7.3E-122 T 11-10-2018 IPR016876 Uncharacterised conserved protein UCP028234 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PIRSF PIRSF000722 1 397 4.0E-150 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 Gene3D G3DSA:3.30.420.40 2 194 4.5E-76 T 11-10-2018 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 TIGRFAM TIGR00016 ackA: acetate kinase 2 396 2.6E-174 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 172 185 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 377 389 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 298 311 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 321 337 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 202 223 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 PRINTS PR00471 Acetate kinase family signature 5 16 2.5E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 Pfam PF00871 Acetokinase family 5 390 4.5E-169 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 SUPERFAMILY SSF53067 3 195 2.78E-66 T 11-10-2018 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 Gene3D G3DSA:3.30.420.40 195 397 9.7E-83 T 11-10-2018 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 SUPERFAMILY SSF53067 155 395 4.58E-86 T 11-10-2018 VV93_v1c18970 a0e8637c77cd5188242631059fa62da6 398 Hamap MF_00020 Acetate kinase [ackA]. 1 398 191.208 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Gene3D G3DSA:3.40.50.300 595 897 1.0E-120 T 11-10-2018 VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 SUPERFAMILY SSF46785 915 980 3.95E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 SMART SM00843 915 980 2.2E-38 T 11-10-2018 IPR018541 FtsK gamma domain VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Gene3D G3DSA:1.10.10.10 909 976 3.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 SUPERFAMILY SSF52540 572 884 2.52E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Gene3D G3DSA:3.30.980.40 490 594 6.5E-33 T 11-10-2018 VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Pfam PF09397 Ftsk gamma domain 917 977 1.1E-25 T 11-10-2018 IPR018541 FtsK gamma domain VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 29 199 6.9E-42 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region VV93_v1c12360 15d19b8dab6b2f90e1233bd6ee2d6a3c 983 Pfam PF01580 FtsK/SpoIIIE family 598 811 1.2E-71 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 VV93_v1c27540 1bc73a6637984816ad1cfbb1b73df7f5 336 Gene3D G3DSA:3.90.25.10 193 328 5.6E-141 T 11-10-2018 VV93_v1c27540 1bc73a6637984816ad1cfbb1b73df7f5 336 SUPERFAMILY SSF51735 1 335 3.59E-97 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c27540 1bc73a6637984816ad1cfbb1b73df7f5 336 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 2.5E-141 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VV93_v1c27540 1bc73a6637984816ad1cfbb1b73df7f5 336 Gene3D G3DSA:3.40.50.720 3 273 5.6E-141 T 11-10-2018 VV93_v1c27540 1bc73a6637984816ad1cfbb1b73df7f5 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 8.0E-59 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 Gene3D G3DSA:3.40.30.60 366 509 1.3E-53 T 11-10-2018 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PIRSF PIRSF005419 11 700 2.8E-251 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 Gene3D G3DSA:1.10.8.540 510 597 3.9E-24 T 11-10-2018 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 24 697 7.8E-264 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 149 172 - T 11-10-2018 IPR025505 FHIPEP conserved site VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 Pfam PF00771 FHIPEP family 34 690 1.1E-268 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 144 160 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 193 210 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 244 258 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 40 53 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 77 96 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 163 181 1.8E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 VV93_v1c21700 b629e1ae1c1ee0dd9721faff3eda80cb 700 Gene3D G3DSA:1.10.490.80 601 698 3.0E-14 T 11-10-2018 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 Gene3D G3DSA:3.90.930.12 83 177 2.5E-38 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.3E-73 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.168 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 PIRSF PIRSF002162 1 177 1.1E-42 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 Gene3D G3DSA:3.90.930.12 1 82 4.5E-31 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 SUPERFAMILY SSF56053 1 82 4.68E-25 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.4E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.4E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.4E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 SUPERFAMILY SSF56053 83 177 2.88E-34 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 Pfam PF00347 Ribosomal protein L6 91 164 2.0E-17 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03610 4a0d61b8b8d7e489cd4f1d0743d78d99 177 Pfam PF00347 Ribosomal protein L6 11 82 8.1E-21 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 Gene3D G3DSA:3.30.1330.60 79 221 2.6E-39 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 Pfam PF13488 Glycine zipper 38 85 3.9E-12 T 11-10-2018 IPR039567 Glycine zipper domain VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 Pfam PF00691 OmpA family 117 211 2.2E-17 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 SUPERFAMILY SSF103088 105 220 1.44E-33 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 PRINTS PR01021 OMPA domain signature 162 178 3.9E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 PRINTS PR01021 OMPA domain signature 117 139 3.9E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c17190 38b5a4447b501c9ae678cab894be5e0d 221 PRINTS PR01021 OMPA domain signature 147 162 3.9E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 SUPERFAMILY SSF116726 390 437 2.75E-7 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Gene3D G3DSA:3.30.70.1450 140 232 1.4E-21 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.0E-33 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.0E-33 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.0E-33 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.0E-33 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.0E-33 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 SUPERFAMILY SSF51735 1 151 6.55E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 SUPERFAMILY SSF116726 136 223 1.57E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Pfam PF02254 TrkA-N domain 3 116 4.0E-29 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Pfam PF02254 TrkA-N domain 235 350 4.6E-25 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Pfam PF02080 TrkA-C domain 390 449 8.1E-10 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Pfam PF02080 TrkA-C domain 156 225 4.2E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Gene3D G3DSA:3.40.50.720 2 139 7.2E-52 T 11-10-2018 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 SUPERFAMILY SSF51735 232 376 3.02E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Gene3D G3DSA:3.40.50.720 233 366 1.7E-37 T 11-10-2018 VV93_v1c29500 5af121d0d00b2a2f87ea8c680f0737e1 458 Gene3D G3DSA:3.30.70.1450 367 458 9.7E-29 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 SUPERFAMILY SSF100950 74 234 2.16E-30 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 Gene3D G3DSA:3.30.750.70 70 140 1.0E-5 T 11-10-2018 VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 SUPERFAMILY SSF46785 4 61 7.86E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 Pfam PF00455 DeoR C terminal sensor domain 75 233 1.2E-50 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 SMART SM01134 73 234 1.0E-66 T 11-10-2018 VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 SMART SM00420 6 58 3.9E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 Gene3D G3DSA:1.10.10.10 1 53 4.6E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44220 f4b16e0def807c89e0bb4f9324207fd6 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 3.4E-16 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SUPERFAMILY SSF141868 613 839 1.7E-58 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Pfam PF10442 FIST C domain 230 355 5.1E-12 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Gene3D G3DSA:3.20.20.450 606 842 1.7E-59 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SUPERFAMILY SSF55073 434 576 6.91E-8 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SMART SM00052 605 843 2.2E-32 T 11-10-2018 IPR001633 EAL domain VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Pfam PF00563 EAL domain 613 839 3.2E-57 T 11-10-2018 IPR001633 EAL domain VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Gene3D G3DSA:3.30.70.270 414 587 2.4E-13 T 11-10-2018 VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SMART SM00897 41 229 2.3E-30 T 11-10-2018 IPR013702 FIST domain, N-terminal VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Pfam PF08495 FIST N domain 44 228 1.9E-19 T 11-10-2018 IPR013702 FIST domain, N-terminal VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SMART SM00267 417 592 4.2E-4 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 Pfam PF00990 Diguanylate cyclase, GGDEF domain 430 490 9.6E-7 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00810 e9d749cd53b5a74cbd82b1664ec676ec 843 SMART SM01204 230 356 1.9E-16 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 1.9E-11 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 SUPERFAMILY SSF48168 10 221 9.29E-75 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 SUPERFAMILY SSF51998 222 739 1.8E-164 T 11-10-2018 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 Gene3D G3DSA:3.20.70.20 78 742 4.8E-155 T 11-10-2018 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 4.2E-39 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 Pfam PF03477 ATP cone domain 6 92 1.8E-18 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 664 5.4E-114 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11640 69441c058204de3752a5ebe1a6a189c9 760 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.5E-173 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c15200 c64c3e92c92670372e7e65f3de1d0bc5 157 Gene3D G3DSA:3.30.450.40 2 157 8.1E-62 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c15200 c64c3e92c92670372e7e65f3de1d0bc5 157 SUPERFAMILY SSF55781 5 145 6.73E-39 T 11-10-2018 VV93_v1c15200 c64c3e92c92670372e7e65f3de1d0bc5 157 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 89 106 - T 11-10-2018 IPR000614 Free Met sulfoxide reductase conserved site VV93_v1c15200 c64c3e92c92670372e7e65f3de1d0bc5 157 Pfam PF13185 GAF domain 31 145 1.5E-8 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 Pfam PF01168 Alanine racemase, N-terminal domain 48 271 1.4E-49 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 Gene3D G3DSA:2.40.37.10 44 403 5.1E-128 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 SUPERFAMILY SSF51419 48 281 2.22E-47 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 72 82 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 SMART SM01005 279 407 2.3E-41 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 Gene3D G3DSA:3.20.20.10 50 267 5.1E-128 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 Hamap MF_01201 Alanine racemase. 41 407 25.828 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 201 212 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 244 271 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 333 350 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 312 327 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 103 121 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 67 83 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 PRINTS PR00992 Alanine racemase signature 165 177 4.2E-31 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 TIGRFAM TIGR00492 alr: alanine racemase 44 407 2.1E-70 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 Pfam PF00842 Alanine racemase, C-terminal domain 280 406 3.5E-31 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c39720 2ce463b791545c456ce7ce49a4ac3f72 408 SUPERFAMILY SSF50621 272 407 3.21E-39 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 Gene3D G3DSA:1.10.10.370 39 109 2.4E-31 T 11-10-2018 VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 Gene3D G3DSA:3.30.1420.10 2 38 1.6E-13 T 11-10-2018 VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 PIRSF PIRSF006223 2 109 1.2E-40 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 109 2.9E-49 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 SUPERFAMILY SSF69721 2 109 2.75E-41 T 11-10-2018 IPR025526 DsrC-like domain superfamily VV93_v1c14560 c95f5f5eb218c0ce3d178e2e406ca5b0 109 Pfam PF04358 DsrC like protein 4 109 2.4E-44 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 Gene3D G3DSA:3.40.190.10 102 289 9.2E-34 T 11-10-2018 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 Gene3D G3DSA:3.40.190.10 163 262 9.2E-34 T 11-10-2018 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 Pfam PF03466 LysR substrate binding domain 93 291 4.8E-24 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 SUPERFAMILY SSF46785 6 113 5.17E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 SUPERFAMILY SSF53850 93 292 1.54E-27 T 11-10-2018 VV93_v1c32740 c2c2a2543f5920f488dd9c4034d3e55d 296 Gene3D G3DSA:1.10.10.10 5 91 1.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c07620 6aa9f2faf24b92f8d55cc6c242c9e937 135 Pfam PF04355 SmpA / OmlA family 51 118 7.1E-26 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 VV93_v1c07620 6aa9f2faf24b92f8d55cc6c242c9e937 135 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 23 128 32.249 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE VV93_v1c07620 6aa9f2faf24b92f8d55cc6c242c9e937 135 Gene3D G3DSA:3.30.1450.10 50 131 4.5E-25 T 11-10-2018 IPR037873 BamE-like VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 Gene3D G3DSA:3.30.70.20 105 158 1.1E-58 T 11-10-2018 VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 228 1.3E-133 T 11-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 Pfam PF12800 4Fe-4S binding domain 52 63 0.28 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 SUPERFAMILY SSF54862 42 224 1.15E-62 T 11-10-2018 VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 Gene3D G3DSA:3.30.70.20 44 219 1.1E-58 T 11-10-2018 VV93_v1c11710 08de03f0ae185e6c5107d2863fb37805 228 Pfam PF13247 4Fe-4S dicluster domain 91 188 4.2E-26 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c38930 e3b1f236fa45ed7a42d6110bd72adfa3 321 Pfam PF02885 Glycosyl transferase family, helical bundle domain 10 67 8.5E-13 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c38930 e3b1f236fa45ed7a42d6110bd72adfa3 321 Gene3D G3DSA:3.40.1030.10 72 314 2.6E-39 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c38930 e3b1f236fa45ed7a42d6110bd72adfa3 321 Gene3D G3DSA:1.20.970.10 3 71 4.2E-17 T 11-10-2018 VV93_v1c38930 e3b1f236fa45ed7a42d6110bd72adfa3 321 SUPERFAMILY SSF47648 8 71 2.09E-15 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c38930 e3b1f236fa45ed7a42d6110bd72adfa3 321 SUPERFAMILY SSF52418 75 315 6.28E-42 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 PIRSF PIRSF009283 1 355 3.6E-127 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 SUPERFAMILY SSF54593 5 341 5.15E-81 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 6 143 8.4E-58 T 11-10-2018 VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 163 275 5.4E-15 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 Gene3D G3DSA:3.10.180.10 158 355 1.8E-69 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 354 1.3E-134 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 VV93_v1c14040 9399bbbb32a728738b033daf389d2197 357 Gene3D G3DSA:3.10.180.10 3 155 8.7E-49 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 SUPERFAMILY SSF55021 8 89 1.73E-17 T 11-10-2018 VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 Gene3D G3DSA:3.30.70.260 94 187 3.0E-37 T 11-10-2018 VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 Gene3D G3DSA:3.30.70.260 6 92 5.9E-25 T 11-10-2018 VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 SUPERFAMILY SSF55021 95 183 2.01E-20 T 11-10-2018 VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 Pfam PF13740 ACT domain 10 85 1.6E-24 T 11-10-2018 VV93_v1c22070 4e32221bc0802f393fb176b23a2de4ab 187 PIRSF PIRSF028103 8 185 2.0E-63 T 11-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Pfam PF00128 Alpha amylase, catalytic domain 33 376 9.2E-129 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Gene3D G3DSA:2.60.40.1180 481 561 2.7E-17 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 10 557 4.1E-271 T 11-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Gene3D G3DSA:3.20.20.80 176 480 1.1E-115 T 11-10-2018 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 SUPERFAMILY SSF51445 9 477 6.73E-164 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 SMART SM00642 18 419 2.0E-165 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Gene3D G3DSA:3.20.20.80 1 111 2.2E-49 T 11-10-2018 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Gene3D G3DSA:3.90.400.10 112 175 9.5E-31 T 11-10-2018 VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 Pfam PF16657 Maltogenic Amylase, C-terminal domain 480 556 9.7E-7 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal VV93_v1c08330 fb61ea8f8fac6bb1ac12c766f1e52fac 561 SUPERFAMILY SSF51011 480 559 4.32E-17 T 11-10-2018 VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 Pfam PF07715 TonB-dependent Receptor Plug Domain 42 151 1.8E-24 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 SUPERFAMILY SSF56935 25 711 3.44E-110 T 11-10-2018 VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 Pfam PF00593 TonB dependent receptor 233 710 6.5E-53 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 694 711 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 Gene3D G3DSA:2.40.170.20 166 711 1.8E-81 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 28 711 1.2E-128 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 30 711 4.3E-127 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 VV93_v1c33500 e4f21f64211bc82383c25f2022e2668a 711 Gene3D G3DSA:2.170.130.10 28 155 2.4E-29 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 SMART SM01210 330 423 6.3E-55 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.9E-83 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 SUPERFAMILY SSF52440 1 103 3.31E-36 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Gene3D G3DSA:3.30.470.20 191 329 3.7E-62 T 11-10-2018 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 11-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Gene3D G3DSA:3.90.600.10 330 429 7.3E-35 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 9.0E-35 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 44.207 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Gene3D G3DSA:3.30.1490.20 121 190 8.9E-30 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 SMART SM01209 103 296 1.0E-143 T 11-10-2018 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 SUPERFAMILY SSF56059 104 322 4.95E-70 T 11-10-2018 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 SUPERFAMILY SSF51246 329 424 4.29E-33 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 1.6E-29 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 Gene3D G3DSA:3.40.50.20 2 95 3.5E-37 T 11-10-2018 VV93_v1c28610 8bb2f2410ee9654be4aba474ff110f84 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 2.4E-186 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c13970 fbeb170249aaffe83df3130234655bee 171 Pfam PF01863 Protein of unknown function DUF45 95 151 1.3E-9 T 11-10-2018 IPR002725 Protein of unknown function DUF45 VV93_v1c13970 fbeb170249aaffe83df3130234655bee 171 Gene3D G3DSA:3.30.2010.10 76 164 8.5E-6 T 11-10-2018 VV93_v1c00940 7bf77a014ab6e02130673cf9152fe706 109 Pfam PF10694 Protein of unknown function (DUF2500) 2 105 1.9E-27 T 11-10-2018 IPR019635 Protein of unknown function DUF2500 VV93_v1c00940 7bf77a014ab6e02130673cf9152fe706 109 Gene3D G3DSA:2.40.50.660 32 108 8.1E-8 T 11-10-2018 VV93_v1c38230 b7314e64686c442edd16955377737fe8 331 Pfam PF11557 Solitary outer membrane autotransporter beta-barrel domain 1 330 5.5E-150 T 11-10-2018 IPR021621 Solitary outer membrane autotransporter beta-barrel domain VV93_v1c44760 950c496f41a6c9eb5a26eb1045ce0d42 230 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 1.6E-43 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c44760 950c496f41a6c9eb5a26eb1045ce0d42 230 SUPERFAMILY SSF53639 2 220 3.34E-65 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c44760 950c496f41a6c9eb5a26eb1045ce0d42 230 SMART SM01007 7 197 7.9E-66 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c44760 950c496f41a6c9eb5a26eb1045ce0d42 230 Gene3D G3DSA:3.40.225.10 1 229 9.2E-57 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c03270 95099495f2ad0b4c25fb14582f035511 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 125 2.8E-11 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c03270 95099495f2ad0b4c25fb14582f035511 178 SUPERFAMILY SSF51161 51 157 1.39E-33 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c03270 95099495f2ad0b4c25fb14582f035511 178 Gene3D G3DSA:2.160.10.10 19 161 3.2E-36 T 11-10-2018 VV93_v1c17680 228e8c84888ad6d6df9f5bcdf47e5f04 435 SUPERFAMILY SSF52540 60 366 1.76E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c17680 228e8c84888ad6d6df9f5bcdf47e5f04 435 Gene3D G3DSA:3.40.50.300 181 428 4.2E-72 T 11-10-2018 VV93_v1c17680 228e8c84888ad6d6df9f5bcdf47e5f04 435 Gene3D G3DSA:3.30.450.380 17 177 4.0E-39 T 11-10-2018 VV93_v1c17680 228e8c84888ad6d6df9f5bcdf47e5f04 435 Pfam PF00437 Type II/IV secretion system protein 84 360 1.9E-81 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Pfam PF12836 Helix-hairpin-helix motif 491 555 7.0E-28 T 11-10-2018 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Gene3D G3DSA:1.10.3500.10 112 498 1.2E-159 T 11-10-2018 IPR023323 Tex-like domain superfamily VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Gene3D G3DSA:3.30.420.140 325 451 1.2E-159 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SUPERFAMILY SSF47781 470 557 1.33E-27 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SMART SM00732 326 424 6.5E-40 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Pfam PF09371 Tex-like protein N-terminal domain 9 193 9.3E-71 T 11-10-2018 IPR018974 Tex-like protein, N-terminal VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Pfam PF00575 S1 RNA binding domain 648 720 2.3E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Pfam PF16921 Tex protein YqgF-like domain 327 451 2.7E-56 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Gene3D G3DSA:1.10.150.310 499 630 7.3E-50 T 11-10-2018 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Gene3D G3DSA:2.40.50.140 631 726 4.2E-29 T 11-10-2018 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SUPERFAMILY SSF53098 322 469 3.72E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SUPERFAMILY SSF50249 638 724 6.34E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 Gene3D G3DSA:1.10.10.650 2 109 2.8E-41 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SUPERFAMILY SSF158832 3 321 3.14E-119 T 11-10-2018 VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SUPERFAMILY SSF47781 560 632 1.16E-18 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c02130 4fa20a54d554d838faa0781c3b003673 774 SMART SM00316 649 720 3.1E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 SUPERFAMILY SSF141868 274 525 2.35E-79 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 SUPERFAMILY SSF55073 102 261 3.22E-43 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 93 258 3.1E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 Pfam PF00990 Diguanylate cyclase, GGDEF domain 99 252 1.4E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 Pfam PF00563 EAL domain 275 513 1.8E-64 T 11-10-2018 IPR001633 EAL domain VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 SMART SM00267 86 258 2.2E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 SMART SM00052 269 518 2.2E-85 T 11-10-2018 IPR001633 EAL domain VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 Gene3D G3DSA:3.30.70.270 92 272 5.4E-51 T 11-10-2018 VV93_v1c39490 7192c4502aa6b3815c2099bdf3d17cc6 532 Gene3D G3DSA:3.20.20.450 273 526 2.4E-88 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c44970 62e5d6a0153f8a0e2a01afe810e63d53 486 Gene3D G3DSA:3.40.720.10 1 484 5.8E-104 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c44970 62e5d6a0153f8a0e2a01afe810e63d53 486 Pfam PF16347 Domain of unknown function (DUF4976) 375 473 2.7E-9 T 11-10-2018 IPR032506 Domain of unknown function DUF4976 Reactome: R-HSA-2024096|Reactome: R-HSA-2206307 VV93_v1c44970 62e5d6a0153f8a0e2a01afe810e63d53 486 Pfam PF00884 Sulfatase 2 370 3.8E-39 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c44970 62e5d6a0153f8a0e2a01afe810e63d53 486 SUPERFAMILY SSF53649 2 473 2.04E-97 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c44970 62e5d6a0153f8a0e2a01afe810e63d53 486 ProSitePatterns PS00523 Sulfatases signature 1. 47 59 - T 11-10-2018 IPR024607 Sulfatase, conserved site VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 6 54 14.671 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 SUPERFAMILY SSF57829 3 54 7.94E-19 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 1.6E-26 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 Pfam PF00471 Ribosomal protein L33 8 54 3.4E-17 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02790 e92989b1f1b25736b8b56be82d15c652 56 Gene3D G3DSA:2.20.28.120 1 56 4.9E-28 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c08680 e40c4daf5113ff7c5cded7c112bfbb76 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 2.6E-59 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC VV93_v1c08680 e40c4daf5113ff7c5cded7c112bfbb76 159 SUPERFAMILY SSF55826 2 156 2.22E-42 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c08680 e40c4daf5113ff7c5cded7c112bfbb76 159 PIRSF PIRSF006181 1 159 2.8E-52 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC VV93_v1c08680 e40c4daf5113ff7c5cded7c112bfbb76 159 Pfam PF04073 Aminoacyl-tRNA editing domain 32 145 6.0E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c08680 e40c4daf5113ff7c5cded7c112bfbb76 159 Gene3D G3DSA:3.90.960.10 1 157 2.2E-56 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 SUPERFAMILY SSF64518 1 374 1.7E-78 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Gene3D G3DSA:1.20.1330.10 283 334 2.9E-33 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Gene3D G3DSA:1.20.1330.10 44 165 1.8E-57 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 2.1E-34 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Gene3D G3DSA:2.170.280.10 186 282 2.9E-33 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Gene3D G3DSA:1.20.58.1830 5 32 1.8E-57 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Gene3D G3DSA:1.20.58.1830 340 374 2.9E-33 T 11-10-2018 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Pfam PF00700 Bacterial flagellin C-terminal helical region 290 374 7.6E-21 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 Pfam PF07196 Flagellin hook IN motif 194 243 1.6E-6 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 PRINTS PR00207 Flagellin signature 75 94 5.1E-21 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 PRINTS PR00207 Flagellin signature 36 53 5.1E-21 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c09010 ff42d53441b4d94edb506afa7a37b60f 375 PRINTS PR00207 Flagellin signature 110 133 5.1E-21 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c15810 b0f211195fd27356beb4257e3cdf9477 245 Pfam PF02146 Sir2 family 13 186 2.4E-48 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 VV93_v1c15810 b0f211195fd27356beb4257e3cdf9477 245 Gene3D G3DSA:3.40.50.1220 8 225 1.1E-79 T 11-10-2018 VV93_v1c15810 b0f211195fd27356beb4257e3cdf9477 245 Gene3D G3DSA:3.30.1600.10 22 158 1.1E-79 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily VV93_v1c15810 b0f211195fd27356beb4257e3cdf9477 245 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 6 236 56.293 T 11-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 VV93_v1c15810 b0f211195fd27356beb4257e3cdf9477 245 SUPERFAMILY SSF52467 6 235 1.16E-72 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c26750 bffe5fdca954a77788e5577deb88e025 179 Gene3D G3DSA:2.40.50.140 2 147 7.6E-51 T 11-10-2018 VV93_v1c26750 bffe5fdca954a77788e5577deb88e025 179 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 38.881 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VV93_v1c26750 bffe5fdca954a77788e5577deb88e025 179 Pfam PF00436 Single-strand binding protein family 6 105 1.3E-42 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 VV93_v1c26750 bffe5fdca954a77788e5577deb88e025 179 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 179 2.3E-62 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 VV93_v1c26750 bffe5fdca954a77788e5577deb88e025 179 SUPERFAMILY SSF50249 4 179 1.3E-60 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Pfam PF07516 SecA Wing and Scaffold domain 617 829 2.9E-65 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Gene3D G3DSA:1.10.3060.10 621 833 1.5E-75 T 11-10-2018 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Pfam PF02810 SEC-C motif 887 905 2.0E-10 T 11-10-2018 IPR004027 SEC-C motif VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SUPERFAMILY SSF52540 5 416 1.31E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 101 115 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 117 127 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 414 427 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 170 190 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 340 362 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 377 394 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 PRINTS PR00906 SecA protein signature 63 87 1.2E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 816 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SMART SM00957 6 403 0.0 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Pfam PF01043 SecA preprotein cross-linking domain 232 359 3.0E-38 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Gene3D G3DSA:3.40.50.300 22 416 2.4E-176 T 11-10-2018 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Pfam PF07517 SecA DEAD-like domain 7 403 2.9E-133 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Gene3D G3DSA:3.40.50.300 418 620 3.1E-87 T 11-10-2018 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Gene3D G3DSA:3.90.1440.10 229 369 2.4E-176 T 11-10-2018 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.014 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SUPERFAMILY SSF81886 620 895 1.44E-82 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SMART SM00958 228 359 3.1E-81 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 ProSitePatterns PS01312 SecA family signature. 501 516 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SUPERFAMILY SSF81767 227 369 1.22E-42 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 VV93_v1c05640 8dad434667e99b63ead97866cedfa38b 907 SUPERFAMILY SSF52540 418 610 2.01E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Pfam PF00158 Sigma-54 interaction domain 136 303 1.7E-73 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 160 173 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Gene3D G3DSA:1.10.10.60 391 485 9.9E-13 T 11-10-2018 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 SUPERFAMILY SSF46689 348 485 3.44E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Pfam PF02954 Bacterial regulatory protein, Fis family 443 483 2.4E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 SUPERFAMILY SSF52172 6 178 2.57E-5 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Gene3D G3DSA:1.10.8.60 308 384 2.9E-25 T 11-10-2018 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 SUPERFAMILY SSF52540 136 377 7.29E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 466 486 2.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 466 2.5E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Gene3D G3DSA:3.40.50.2300 1 116 8.0E-11 T 11-10-2018 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Gene3D G3DSA:3.40.50.300 124 307 1.9E-67 T 11-10-2018 VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 Pfam PF06490 Flagellar regulatory protein FleQ 6 114 4.0E-29 T 11-10-2018 IPR010518 Flagellar regulatory FleQ VV93_v1c21880 d0b6675b9eb387d7bd8ec0b1354ad371 487 SMART SM00382 156 300 1.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 SMART SM00283 365 626 4.6E-72 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 SMART SM00304 296 350 1.2E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Pfam PF02743 Cache domain 41 258 2.5E-21 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 SUPERFAMILY SSF58104 318 627 3.27E-76 T 11-10-2018 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Gene3D G3DSA:3.30.450.20 66 171 1.1E-23 T 11-10-2018 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Pfam PF00672 HAMP domain 299 347 5.9E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 434 593 5.0E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Gene3D G3DSA:3.30.450.20 53 266 1.1E-23 T 11-10-2018 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 Gene3D G3DSA:1.10.287.950 296 628 3.4E-73 T 11-10-2018 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 5.0E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 492 521 5.0E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c38990 cc5fa6b4249d44cefe7905ed971c25f9 628 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 463 490 5.0E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 Pfam PF12852 Cupin 3 165 2.4E-34 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 Gene3D G3DSA:1.10.10.60 175 282 7.1E-28 T 11-10-2018 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 SUPERFAMILY SSF46689 180 231 3.64E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 SUPERFAMILY SSF46689 233 282 8.06E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 SUPERFAMILY SSF51215 30 163 1.19E-11 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 Pfam PF12833 Helix-turn-helix domain 204 281 1.2E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 264 3.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 280 3.4E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 SMART SM00342 197 280 2.0E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44420 5677cd561ea7f8c986a6816023cb0fd9 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 234 276 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 SUPERFAMILY SSF52540 10 259 1.77E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 305 3.1E-15 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 SMART SM00382 43 238 2.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 Pfam PF00005 ABC transporter 35 188 2.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 324 1.6E-21 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c31370 6526dc635cde1d7a040390f5196b38c8 328 Gene3D G3DSA:3.40.50.300 8 328 4.3E-85 T 11-10-2018 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 SMART SM00971 9 113 4.4E-58 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 112 1.7E-37 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 1.0E-74 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 Gene3D G3DSA:2.160.10.10 143 267 2.7E-37 T 11-10-2018 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 SUPERFAMILY SSF51161 8 258 5.24E-63 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 Gene3D G3DSA:1.10.3130.10 1 142 9.3E-52 T 11-10-2018 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 PIRSF PIRSF000441 75 262 4.9E-56 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 PIRSF PIRSF000441 7 73 120.0 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c28140 10f5ffd3b985c536652d967408ce9ae2 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 3.6E-9 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c25150 a429f47b74ef347314c16b87b59e05c5 153 Pfam PF02631 RecX family 36 150 4.6E-29 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VV93_v1c25150 a429f47b74ef347314c16b87b59e05c5 153 Gene3D G3DSA:1.10.10.10 104 151 1.8E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c25150 a429f47b74ef347314c16b87b59e05c5 153 Gene3D G3DSA:1.10.10.10 11 56 2.8E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c25150 a429f47b74ef347314c16b87b59e05c5 153 Hamap MF_01114 Regulatory protein RecX [recX]. 11 153 13.429 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 VV93_v1c25150 a429f47b74ef347314c16b87b59e05c5 153 Gene3D G3DSA:1.10.10.10 58 101 4.8E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 SUPERFAMILY SSF53137 14 129 6.54E-48 T 11-10-2018 VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.665 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 Pfam PF00411 Ribosomal protein S11 19 128 1.5E-52 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 4.2E-55 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 PIRSF PIRSF002131 1 129 2.1E-52 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03690 a7cce014599a851da5a362b0f6ba5fe0 129 Gene3D G3DSA:3.30.420.80 1 129 3.3E-57 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 19 342 21.724 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 ProSitePatterns PS01057 SAICAR synthetase signature 1. 124 138 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 SUPERFAMILY SSF56104 14 344 7.52E-69 T 11-10-2018 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 Gene3D G3DSA:3.30.200.20 13 129 8.2E-24 T 11-10-2018 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 Gene3D G3DSA:3.30.470.20 130 292 3.3E-15 T 11-10-2018 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 TIGRFAM TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase 2 366 8.0E-214 T 11-10-2018 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 VV93_v1c13770 009000df490406b34d71311fc5cd9ee2 367 Pfam PF01259 SAICAR synthetase 22 293 4.9E-47 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 VV93_v1c10680 a187052160f702892328087f2372b22d 94 Pfam PF07023 Protein of unknown function (DUF1315) 4 84 2.4E-28 T 11-10-2018 IPR009749 Protein of unknown function DUF1315 VV93_v1c08220 2173818cadc32d17080c3501b169e333 521 Pfam PF00990 Diguanylate cyclase, GGDEF domain 363 516 1.8E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c08220 2173818cadc32d17080c3501b169e333 521 Gene3D G3DSA:3.30.70.270 347 520 3.6E-41 T 11-10-2018 VV93_v1c08220 2173818cadc32d17080c3501b169e333 521 SUPERFAMILY SSF55073 366 518 4.08E-36 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c08220 2173818cadc32d17080c3501b169e333 521 SMART SM00267 351 521 2.7E-41 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c08220 2173818cadc32d17080c3501b169e333 521 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 518 6.2E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Gene3D G3DSA:3.40.228.10 195 394 8.4E-133 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Gene3D G3DSA:3.40.50.740 126 617 8.4E-133 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Gene3D G3DSA:2.40.40.20 767 951 8.0E-49 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 SMART SM00926 61 115 7.1E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 SUPERFAMILY SSF50692 752 951 1.62E-40 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Pfam PF00384 Molybdopterin oxidoreductase 118 568 3.0E-55 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 66 83 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Gene3D G3DSA:2.20.25.90 62 114 3.1E-12 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 62 112 1.4E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 PIRSF PIRSF036643 641 677 420.0 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 PIRSF PIRSF036643 12 439 6.8E-101 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 PIRSF PIRSF036643 785 951 8.8E-17 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 PIRSF PIRSF036643 448 593 3.9E-11 T 11-10-2018 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 Pfam PF01568 Molydopterin dinucleotide binding domain 818 944 8.7E-22 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VV93_v1c15920 c6430173b93317f0f72d4786f90124fc 951 SUPERFAMILY SSF53706 60 646 3.27E-201 T 11-10-2018 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 Pfam PF01761 3-dehydroquinate synthase 68 325 2.1E-111 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 Gene3D G3DSA:1.20.1090.10 173 362 1.8E-71 T 11-10-2018 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 355 3.9E-122 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 Gene3D G3DSA:3.40.50.1970 1 172 2.9E-66 T 11-10-2018 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 PIRSF PIRSF001455 4 361 5.0E-109 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 SUPERFAMILY SSF56796 4 357 3.53E-119 T 11-10-2018 VV93_v1c27170 415abf7a33e710dd9d49b3dd0d65b19e 363 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 356 74.213 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 Pfam PF00108 Thiolase, N-terminal domain 14 286 1.5E-61 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 SUPERFAMILY SSF53901 296 434 5.52E-30 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 SUPERFAMILY SSF53901 14 293 3.26E-60 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 6 435 5.1E-273 T 11-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 1 435 65.753 T 11-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 Pfam PF02803 Thiolase, C-terminal domain 295 433 4.0E-35 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 Gene3D G3DSA:3.40.47.10 4 434 3.6E-109 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 ProSitePatterns PS00737 Thiolases signature 2. 381 397 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 16 433 8.3E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c21440 24d2a7f91706a151f819c608ceb51571 435 PIRSF PIRSF000429 8 435 1.2E-118 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c13150 e08c60a44f5e57aecdaef2cfd4575e17 309 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 25 304 2.1E-165 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VV93_v1c13150 e08c60a44f5e57aecdaef2cfd4575e17 309 Gene3D G3DSA:3.40.50.150 88 291 1.9E-43 T 11-10-2018 VV93_v1c13150 e08c60a44f5e57aecdaef2cfd4575e17 309 SUPERFAMILY SSF53335 4 287 2.18E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 SUPERFAMILY SSF158791 34 132 3.14E-12 T 11-10-2018 VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 SUPERFAMILY SSF54631 140 272 7.71E-15 T 11-10-2018 VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 SMART SM00924 34 137 3.5E-9 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 SUPERFAMILY SSF161093 276 447 2.75E-47 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 Pfam PF01769 Divalent cation transporter 319 440 7.7E-23 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 Gene3D G3DSA:1.10.357.20 274 447 1.5E-47 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 Gene3D G3DSA:3.10.580.10 133 258 7.5E-34 T 11-10-2018 VV93_v1c41750 1f1e49811d8d7edf73313394c341215a 448 Pfam PF03448 MgtE intracellular N domain 36 135 2.5E-13 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 SMART SM00304 216 268 2.9E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 SMART SM00387 366 471 2.9E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 SUPERFAMILY SSF47384 253 314 1.96E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 Gene3D G3DSA:3.30.565.10 330 471 4.6E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 SUPERFAMILY SSF55874 327 469 7.86E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 Gene3D G3DSA:1.10.287.130 220 326 1.5E-14 T 11-10-2018 VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 2.2E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 2.2E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43340 74726ba0ab09fdbb7d61d24caa670e2a 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 468 8.6E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 132 144 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 256 443 1.0E-27 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 PIRSF PIRSF000538 1 484 2.7E-83 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 TIGRFAM TIGR02628 fuculo_kin_coli: L-fuculokinase 2 469 1.9E-265 T 11-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 SUPERFAMILY SSF53067 4 250 2.59E-58 T 11-10-2018 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 Gene3D G3DSA:3.30.420.40 1 239 5.9E-61 T 11-10-2018 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 SUPERFAMILY SSF53067 252 469 8.95E-44 T 11-10-2018 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 247 1.5E-74 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 Hamap MF_00986 L-fuculokinase [fucK]. 1 469 58.868 T 11-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 Gene3D G3DSA:3.30.420.40 240 487 2.3E-42 T 11-10-2018 VV93_v1c19190 6db6fb591f0e2003c1eba2e8bc0710d3 488 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 357 377 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 SMART SM00421 152 209 6.6E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 Gene3D G3DSA:3.40.50.2300 25 138 2.5E-7 T 11-10-2018 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 Gene3D G3DSA:1.10.10.10 148 211 7.9E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 3.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 3.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 3.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 SUPERFAMILY SSF46894 150 210 3.4E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14250 81e83e9bcd4929eb9ed6643a2abad893 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 208 2.3E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33970 5a78421a5a4cf362f75f882eacbd8c2a 174 SUPERFAMILY SSF52374 1 171 8.44E-25 T 11-10-2018 VV93_v1c33970 5a78421a5a4cf362f75f882eacbd8c2a 174 Gene3D G3DSA:3.40.50.620 1 173 1.8E-43 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c33970 5a78421a5a4cf362f75f882eacbd8c2a 174 Pfam PF01467 Cytidylyltransferase-like 7 143 1.7E-7 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Pfam PF16189 Creatinase/Prolidase N-terminal domain 148 306 1.5E-32 T 11-10-2018 VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Pfam PF00557 Metallopeptidase family M24 310 524 1.4E-43 T 11-10-2018 IPR000994 Peptidase M24 VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Gene3D G3DSA:3.90.230.10 300 593 3.0E-94 T 11-10-2018 VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 134 2.1E-18 T 11-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Pfam PF16188 C-terminal region of peptidase_M24 534 593 1.5E-21 T 11-10-2018 IPR032416 Peptidase M24, C-terminal domain VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Gene3D G3DSA:3.40.350.10 1 146 3.2E-36 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 SUPERFAMILY SSF55920 303 559 2.75E-55 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 SUPERFAMILY SSF53092 7 130 7.15E-19 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VV93_v1c29200 1bb8da01e1708445f97abe96640d4f9b 595 Gene3D G3DSA:3.40.350.10 147 290 9.8E-23 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 SUPERFAMILY SSF54211 1 181 8.6E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 SUPERFAMILY SSF55666 153 236 1.14E-25 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 Gene3D G3DSA:3.30.230.70 13 238 2.1E-63 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 7.0E-24 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.006 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 9.6E-11 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c02710 658e75b1198924c353e4bff213d5d76c 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.8E-111 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 Pfam PF13365 Trypsin-like peptidase domain 82 216 1.2E-32 T 11-10-2018 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 187 204 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 91 103 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 297 309 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 209 226 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 112 132 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 PRINTS PR00834 HtrA/DegQ protease family signature 152 176 9.4E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 352 8.0E-168 T 11-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 SUPERFAMILY SSF50494 43 266 1.8E-62 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 SMART SM00228 257 339 6.3E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 Gene3D G3DSA:2.40.10.10 31 142 1.6E-32 T 11-10-2018 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 SUPERFAMILY SSF50156 240 347 6.97E-21 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 Gene3D G3DSA:2.30.42.10 257 354 2.1E-24 T 11-10-2018 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 Pfam PF13180 PDZ domain 258 347 3.2E-16 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05310 f11a440bfd8c53dd36299f30471238cd 355 Gene3D G3DSA:2.40.10.10 143 256 1.3E-36 T 11-10-2018 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Gene3D G3DSA:2.60.40.1180 593 704 1.5E-5 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Gene3D G3DSA:2.70.98.60 1 275 8.1E-50 T 11-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Pfam PF02065 Melibiase 255 594 5.6E-120 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 611 692 1.9E-9 T 11-10-2018 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Gene3D G3DSA:3.20.20.70 276 592 2.6E-119 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PIRSF PIRSF005536 1 704 5.1E-232 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 SUPERFAMILY SSF51445 291 623 5.23E-104 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 ProSitePatterns PS00512 Alpha-galactosidase signature. 325 340 - T 11-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 25 237 8.1E-42 T 11-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 374 396 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 324 339 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 432 447 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 207 222 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 296 310 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 258 278 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 505 521 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c31630 1fc1deb5e4d94392a958b0c16aa3a265 706 PRINTS PR00743 Glycosyl hydrolase family 36 signature 480 496 2.2E-57 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 11-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 1.2E-134 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 Pfam PF00814 Glycoprotease family 24 307 1.2E-103 T 11-10-2018 IPR000905 Gcp-like domain VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 SUPERFAMILY SSF53067 101 309 6.48E-43 T 11-10-2018 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 Gene3D G3DSA:3.30.420.40 129 293 5.4E-132 T 11-10-2018 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 3.9E-125 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.5E-50 T 11-10-2018 IPR017861 Kae1/TsaD family VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 Gene3D G3DSA:3.30.420.40 3 315 5.4E-132 T 11-10-2018 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 SUPERFAMILY SSF53067 3 123 5.61E-32 T 11-10-2018 VV93_v1c05070 445ee91aa1df5f7d81bec9b73bb2c375 339 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 63.684 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 Gene3D G3DSA:3.30.360.10 130 316 1.8E-150 T 11-10-2018 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 PIRSF PIRSF000148 4 337 1.2E-131 T 11-10-2018 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 SUPERFAMILY SSF55347 131 320 3.27E-77 T 11-10-2018 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 334 2.5E-127 T 11-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 Gene3D G3DSA:3.40.50.720 7 330 1.8E-150 T 11-10-2018 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 333 36.373 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 232 246 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 SUPERFAMILY SSF51735 5 159 5.15E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 SMART SM00859 6 121 1.5E-41 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 319 6.4E-61 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c21300 1935ef4619bd21e44fc152752ce0f6d2 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 120 3.8E-31 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.2E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.2E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 2.7E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 142 196 8.6E-12 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 SUPERFAMILY SSF46689 4 74 1.65E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 Gene3D G3DSA:1.10.10.60 1 55 4.9E-18 T 11-10-2018 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 Gene3D G3DSA:1.10.357.10 58 198 3.3E-28 T 11-10-2018 VV93_v1c32120 f7a63fe11f7be1bb818a3d5e69282c93 199 SUPERFAMILY SSF48498 82 197 7.91E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 533 1.0E-136 T 11-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 SUPERFAMILY SSF52540 334 571 2.07E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 SUPERFAMILY SSF90123 7 318 2.49E-37 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 Pfam PF00005 ABC transporter 356 502 8.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 Pfam PF00664 ABC transporter transmembrane region 24 285 3.2E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 Gene3D G3DSA:1.20.1560.10 2 321 1.7E-24 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 SMART SM00382 365 549 8.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13640 b01e3af6dec891e859187c4b218ed0ac 573 Gene3D G3DSA:3.40.50.300 326 572 5.9E-76 T 11-10-2018 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 92 195 9.0E-39 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 Gene3D G3DSA:2.40.500.20 84 201 1.8E-47 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 85 5.8E-27 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 SUPERFAMILY SSF46609 1 86 5.37E-30 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 SUPERFAMILY SSF54719 87 201 2.62E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PIRSF PIRSF000349 1 202 1.0E-81 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 163 170 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.4E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 3.4E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.4E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PRINTS PR01703 Manganese superoxide dismutase signature 121 129 3.4E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 PRINTS PR01703 Manganese superoxide dismutase signature 161 173 3.4E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c28370 adcc4e12d7059d877c67faaaaa145273 202 Gene3D G3DSA:1.10.287.990 20 83 2.3E-24 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10850 d6133fee78bb8217444ef82614d60678 606 Pfam PF00884 Sulfatase 273 519 4.6E-24 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c10850 d6133fee78bb8217444ef82614d60678 606 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 5.9E-99 T 11-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VV93_v1c10850 d6133fee78bb8217444ef82614d60678 606 SUPERFAMILY SSF53649 256 586 4.22E-51 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c10850 d6133fee78bb8217444ef82614d60678 606 PIRSF PIRSF004950 6 604 8.7E-251 T 11-10-2018 IPR012159 Inner membrane protein YejM VV93_v1c10850 d6133fee78bb8217444ef82614d60678 606 Gene3D G3DSA:3.40.720.10 248 529 1.7E-38 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 Gene3D G3DSA:3.40.190.10 31 310 1.3E-108 T 11-10-2018 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 Gene3D G3DSA:3.40.190.10 131 315 1.3E-108 T 11-10-2018 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 Pfam PF13416 Bacterial extracellular solute-binding protein 42 301 5.0E-38 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 SUPERFAMILY SSF53850 26 330 5.65E-86 T 11-10-2018 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PIRSF PIRSF019574 1 343 3.8E-109 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c15780 c33e1f8def1eefe251da4a3ac5b98d66 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 5.9E-71 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c30100 30d9c044388737eeb71533187a9b1dd8 223 Gene3D G3DSA:1.10.3720.10 1 222 3.9E-53 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c30100 30d9c044388737eeb71533187a9b1dd8 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 112 9.4E-25 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c30100 30d9c044388737eeb71533187a9b1dd8 223 SUPERFAMILY SSF161098 13 203 2.88E-43 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c30100 30d9c044388737eeb71533187a9b1dd8 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 217 2.4E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 Pfam PF00487 Fatty acid desaturase 43 262 2.1E-19 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PIRSF PIRSF000345 4 332 8.7E-97 T 11-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 10 30 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 157 175 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 231 245 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 80 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 98 127 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c35790 22713b08e936013d8dceb667281ebeee 374 PRINTS PR00075 Fatty acid desaturase family 1 signature 188 209 3.7E-31 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 SMART SM00100 11 128 7.4E-4 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 SUPERFAMILY SSF51206 8 128 4.06E-16 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 Pfam PF03445 Putative nucleotidyltransferase DUF294 302 432 2.8E-41 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 Pfam PF00027 Cyclic nucleotide-binding domain 31 113 2.6E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 Gene3D G3DSA:2.60.120.10 5 139 1.3E-11 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 Gene3D G3DSA:3.10.580.10 140 288 2.0E-18 T 11-10-2018 VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 SUPERFAMILY SSF54631 144 276 1.97E-17 T 11-10-2018 VV93_v1c28490 b61ab9a765fe3b7bf8908f04da96c268 608 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 471 604 5.2E-37 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 Gene3D G3DSA:3.40.50.150 102 294 1.9E-55 T 11-10-2018 VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 293 33.279 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 2.2E-104 T 11-10-2018 VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 287 2.4E-108 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 PIRSF PIRSF000401 1 295 3.0E-99 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 VV93_v1c28550 668ca28313a3e435a9f05919468ff562 295 SUPERFAMILY SSF53335 44 274 1.52E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c42270 c0612e04008ebfac65e7a2370df639a9 302 Gene3D G3DSA:3.40.50.1980 25 280 4.8E-89 T 11-10-2018 VV93_v1c42270 c0612e04008ebfac65e7a2370df639a9 302 Pfam PF01497 Periplasmic binding protein 41 275 1.3E-23 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain VV93_v1c42270 c0612e04008ebfac65e7a2370df639a9 302 Gene3D G3DSA:3.40.50.1980 171 274 4.8E-89 T 11-10-2018 VV93_v1c42270 c0612e04008ebfac65e7a2370df639a9 302 SUPERFAMILY SSF53807 23 281 4.71E-60 T 11-10-2018 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 Gene3D G3DSA:1.10.287.130 225 332 8.3E-17 T 11-10-2018 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 SMART SM00304 221 273 2.0E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 SMART SM00387 371 476 2.5E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 SUPERFAMILY SSF47384 258 322 1.47E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 473 6.5E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 3.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 3.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 3.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 SUPERFAMILY SSF55874 333 474 2.36E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c10120 7498ae817607e3a6903ffee4f47397e9 478 Gene3D G3DSA:3.30.565.10 333 474 4.8E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 PIRSF PIRSF001461 1 222 1.7E-106 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 4.3E-92 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 3.7E-100 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 SUPERFAMILY SSF51366 4 218 3.77E-78 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c27140 d5f15a3613b3dd2b6bdb8c79ef792b32 222 Gene3D G3DSA:3.20.20.70 5 222 8.7E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c25940 4e5ea4f5c8b7fd16473e3e5457826d32 203 SUPERFAMILY SSF58104 26 147 1.83E-5 T 11-10-2018 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 22.498 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 8.4E-29 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 SMART SM00883 2 95 2.6E-39 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 PRINTS PR00297 10kDa chaperonin signature 82 95 5.6E-24 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 PRINTS PR00297 10kDa chaperonin signature 25 46 5.6E-24 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 PRINTS PR00297 10kDa chaperonin signature 3 18 5.6E-24 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 PRINTS PR00297 10kDa chaperonin signature 60 72 5.6E-24 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 Gene3D G3DSA:2.30.33.40 1 96 5.3E-33 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 SUPERFAMILY SSF50129 1 96 8.12E-28 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c45220 9de5a28f64a06bdf32ff9f38832bd0d5 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 VV93_v1c26630 107ce50b656fdd7ba0f2fae0ba139d3f 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.7E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26630 107ce50b656fdd7ba0f2fae0ba139d3f 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 7.4E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26630 107ce50b656fdd7ba0f2fae0ba139d3f 156 SUPERFAMILY SSF54523 7 114 4.63E-14 T 11-10-2018 VV93_v1c26630 107ce50b656fdd7ba0f2fae0ba139d3f 156 Gene3D G3DSA:3.30.700.10 7 156 1.1E-16 T 11-10-2018 VV93_v1c26630 107ce50b656fdd7ba0f2fae0ba139d3f 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 SMART SM00421 146 203 9.8E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 Pfam PF00072 Response regulator receiver domain 4 116 5.3E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 SMART SM00448 2 115 1.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 3.8E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 SUPERFAMILY SSF52172 2 132 1.34E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 Gene3D G3DSA:3.40.50.12740 2 209 2.7E-59 T 11-10-2018 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c11500 6d0cf1cad48e6983153a245be3675d7f 214 SUPERFAMILY SSF46894 136 210 2.41E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c14770 8c470458e1f63dae5b9ef510613ea0f9 468 Pfam PF02321 Outer membrane efflux protein 28 242 5.9E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c14770 8c470458e1f63dae5b9ef510613ea0f9 468 Pfam PF02321 Outer membrane efflux protein 267 445 6.8E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c14770 8c470458e1f63dae5b9ef510613ea0f9 468 SUPERFAMILY SSF56954 2 445 1.7E-68 T 11-10-2018 VV93_v1c14770 8c470458e1f63dae5b9ef510613ea0f9 468 Gene3D G3DSA:1.20.1600.10 22 457 3.8E-63 T 11-10-2018 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 346 36.911 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 Gene3D G3DSA:3.30.1490.20 102 163 1.2E-17 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 SUPERFAMILY SSF52440 1 88 5.04E-16 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 2 350 1.1E-104 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 SUPERFAMILY SSF51246 299 373 1.33E-18 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 Pfam PF02222 ATP-grasp domain 101 274 4.4E-52 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 SUPERFAMILY SSF56059 92 295 2.3E-57 T 11-10-2018 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 Gene3D G3DSA:3.30.470.20 164 375 1.3E-72 T 11-10-2018 VV93_v1c29420 2f11337d673911ad4e363de27cb953f1 377 Gene3D G3DSA:3.40.50.20 1 80 8.6E-18 T 11-10-2018 VV93_v1c41520 2e3deaf34a3facc0cc07e35c89383571 104 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 1 92 1.0E-45 T 11-10-2018 IPR007458 Protein of unknown function DUF496 VV93_v1c41520 2e3deaf34a3facc0cc07e35c89383571 104 Pfam PF04363 Protein of unknown function (DUF496) 1 92 3.5E-42 T 11-10-2018 IPR007458 Protein of unknown function DUF496 VV93_v1c41520 2e3deaf34a3facc0cc07e35c89383571 104 PIRSF PIRSF028773 1 104 6.3E-46 T 11-10-2018 IPR007458 Protein of unknown function DUF496 VV93_v1c41520 2e3deaf34a3facc0cc07e35c89383571 104 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 1 95 24.397 T 11-10-2018 IPR007458 Protein of unknown function DUF496 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 SUPERFAMILY SSF52172 4 188 1.99E-38 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Pfam PF00072 Response regulator receiver domain 5 114 9.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Gene3D G3DSA:3.40.50.2300 1 129 1.6E-35 T 11-10-2018 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 SUPERFAMILY SSF46689 387 440 9.41E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Gene3D G3DSA:1.10.10.60 391 442 5.1E-13 T 11-10-2018 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 SUPERFAMILY SSF52540 144 373 1.69E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Gene3D G3DSA:1.10.8.60 315 390 1.1E-19 T 11-10-2018 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 SMART SM00448 2 114 2.0E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Pfam PF00158 Sigma-54 interaction domain 144 310 2.1E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Gene3D G3DSA:3.40.50.300 131 314 1.2E-63 T 11-10-2018 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 SMART SM00382 164 307 2.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 Pfam PF02954 Bacterial regulatory protein, Fis family 397 437 9.0E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c10210 fe84467392a3b4a2d08274396d8e5203 446 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c41680 4adc3fcd09393ea6d406db374a472c08 221 SUPERFAMILY SSF50475 2 184 9.43E-52 T 11-10-2018 VV93_v1c41680 4adc3fcd09393ea6d406db374a472c08 221 Gene3D G3DSA:2.30.110.10 2 219 8.1E-59 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c41680 4adc3fcd09393ea6d406db374a472c08 221 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 20 162 3.0E-39 T 11-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 5.3E-52 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 217 463 6.0E-90 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 Gene3D G3DSA:1.10.1040.10 282 487 6.1E-74 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 SUPERFAMILY SSF51735 4 281 5.9E-99 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 Gene3D G3DSA:3.40.50.720 7 281 1.4E-110 T 11-10-2018 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 SUPERFAMILY SSF48179 283 486 1.8E-64 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 4.3E-21 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 4.3E-21 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 4.3E-21 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 4.3E-21 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c44630 bb1a6dbbb94979d005891e9ce1e6c9d6 487 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 11-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 Gene3D G3DSA:1.25.40.10 149 422 1.4E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00028 301 334 180.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00028 381 414 61.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00028 179 212 54.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00028 219 252 0.0095 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00028 261 294 1.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 Gene3D G3DSA:3.30.70.270 480 650 2.4E-37 T 11-10-2018 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SMART SM00267 480 650 1.4E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SUPERFAMILY SSF48452 179 352 2.97E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 Pfam PF13424 Tetratricopeptide repeat 183 250 3.7E-8 T 11-10-2018 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 Pfam PF13181 Tetratricopeptide repeat 264 290 0.021 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 487 648 2.9E-32 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 Pfam PF00990 Diguanylate cyclase, GGDEF domain 492 646 3.4E-32 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38840 c6642b8e578679fddaf03458d03f2005 654 SUPERFAMILY SSF55073 496 648 1.26E-31 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c08390 5e0c5681789783d54870abe1a132d099 92 SUPERFAMILY SSF117991 7 92 6.93E-31 T 11-10-2018 IPR027471 YbeD-like domain superfamily VV93_v1c08390 5e0c5681789783d54870abe1a132d099 92 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 6 92 26.438 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 VV93_v1c08390 5e0c5681789783d54870abe1a132d099 92 Pfam PF04359 Protein of unknown function (DUF493) 12 92 3.0E-29 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 VV93_v1c08390 5e0c5681789783d54870abe1a132d099 92 Gene3D G3DSA:3.30.70.260 6 92 4.7E-33 T 11-10-2018 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 554 1.6E-18 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 Gene3D G3DSA:3.60.21.10 22 360 1.1E-136 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 SUPERFAMILY SSF56300 23 360 6.54E-87 T 11-10-2018 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 249 272 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 28 46 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 221 238 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 289 309 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 536 555 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 PRINTS PR01607 Apyrase family signature 434 457 4.1E-30 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 ProSitePatterns PS00786 5'-nucleotidase signature 2. 115 126 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 Pfam PF00149 Calcineurin-like phosphoesterase 30 265 7.8E-10 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 Gene3D G3DSA:3.90.780.10 410 593 3.5E-49 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 29 653 0.0 T 11-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 VV93_v1c03790 d5ca693af7b7bafd7e288416d4dca056 653 SUPERFAMILY SSF55816 361 603 1.57E-36 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 Gene3D G3DSA:1.20.1530.20 2 399 2.4E-76 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 SUPERFAMILY SSF51735 421 547 1.05E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 303 2.2E-74 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 7.1E-58 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 Gene3D G3DSA:3.40.50.720 419 578 2.7E-33 T 11-10-2018 VV93_v1c22470 49557d3281627d1f1348fd13952f85a5 649 Pfam PF02254 TrkA-N domain 422 535 2.9E-23 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Pfam PF07694 5TMR of 5TMR-LYT 26 194 9.3E-61 T 11-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 SUPERFAMILY SSF55874 420 553 4.16E-12 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Gene3D G3DSA:3.30.565.10 409 558 3.7E-12 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Pfam PF13492 GAF domain 242 351 1.7E-6 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Pfam PF06580 Histidine kinase 367 444 1.9E-26 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Gene3D G3DSA:1.10.1760.20 32 203 6.5E-6 T 11-10-2018 VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 Gene3D G3DSA:3.30.450.40 227 352 2.1E-6 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c06320 7cfd4c739ed003c62f286c9a5a9cdba8 560 SUPERFAMILY SSF55781 228 351 3.08E-7 T 11-10-2018 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 171 211 7.6E-20 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 PIRSF PIRSF000190 1 211 1.4E-81 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 Gene3D G3DSA:2.30.110.10 13 211 2.2E-76 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 SUPERFAMILY SSF50475 11 211 5.24E-66 T 11-10-2018 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 1 211 5.5E-90 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 211 37.895 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 33 116 2.9E-24 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c45120 334bb3c5c33c81e37f5c19fe1e8dbc84 211 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 181 194 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 2.5E-115 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 SUPERFAMILY SSF53671 4 306 1.57E-101 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 7.5E-45 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.5E-32 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 5.4E-37 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 Gene3D G3DSA:3.40.50.1370 8 304 5.1E-121 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 Gene3D G3DSA:3.40.50.1370 135 292 5.1E-121 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 2.6E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 2.6E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 2.6E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.6E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.569 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c26430 035c0f4abb63dfff2c2ec8e6dfc3715d 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 VV93_v1c24210 15399d661c4f6c1d5e4e63226188a85a 1132 Pfam PF05488 PAAR motif 2 38 1.8E-8 T 11-10-2018 IPR008727 PAAR motif VV93_v1c24210 15399d661c4f6c1d5e4e63226188a85a 1132 Gene3D G3DSA:2.60.200.60 2 47 1.7E-11 T 11-10-2018 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Pfam PF00472 RF-1 domain 219 324 5.3E-39 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 6 360 40.924 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Gene3D G3DSA:3.30.70.1660 116 344 2.2E-95 T 11-10-2018 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 361 5.7E-171 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Gene3D G3DSA:1.20.58.410 3 105 1.6E-8 T 11-10-2018 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 SMART SM00937 68 181 3.4E-67 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Gene3D G3DSA:3.30.160.20 213 294 2.2E-95 T 11-10-2018 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 SUPERFAMILY SSF75620 13 356 4.84E-137 T 11-10-2018 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 231 247 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 VV93_v1c08620 31b49cca8f4680f9015fe92d30bc9507 363 Pfam PF03462 PCRF domain 14 206 8.7E-76 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 VV93_v1c41780 c0295585ad8c7f2c342097810b32b42d 425 SUPERFAMILY SSF51556 54 372 4.08E-105 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c41780 c0295585ad8c7f2c342097810b32b42d 425 Pfam PF07969 Amidohydrolase family 42 403 2.6E-53 T 11-10-2018 IPR013108 Amidohydrolase 3 VV93_v1c41780 c0295585ad8c7f2c342097810b32b42d 425 SUPERFAMILY SSF51338 1 76 2.24E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c41780 c0295585ad8c7f2c342097810b32b42d 425 Gene3D G3DSA:3.20.20.140 55 362 3.9E-177 T 11-10-2018 VV93_v1c41780 c0295585ad8c7f2c342097810b32b42d 425 Gene3D G3DSA:2.30.40.10 8 409 3.9E-177 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c27210 f0095ac62320b40e7416ecfd9878de1c 196 PIRSF PIRSF016482 1 196 1.6E-66 T 11-10-2018 IPR007445 Pilus assembly protein, PilO VV93_v1c27210 f0095ac62320b40e7416ecfd9878de1c 196 Pfam PF04350 Pilus assembly protein, PilO 47 189 8.6E-46 T 11-10-2018 IPR007445 Pilus assembly protein, PilO VV93_v1c27210 f0095ac62320b40e7416ecfd9878de1c 196 Gene3D G3DSA:3.30.70.60 92 196 6.0E-26 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VV93_v1c35170 52c729104f10482a040f7f852c8e7a93 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 267 5.0E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c35170 52c729104f10482a040f7f852c8e7a93 280 Gene3D G3DSA:1.10.3720.10 86 274 2.3E-34 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c35170 52c729104f10482a040f7f852c8e7a93 280 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 6 272 8.0E-125 T 11-10-2018 IPR017784 ABC transporter, choline, permease protein VV93_v1c35170 52c729104f10482a040f7f852c8e7a93 280 SUPERFAMILY SSF161098 88 272 4.45E-39 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c02840 9c25e9d83501973a753f08aae94fca10 344 Gene3D G3DSA:3.40.50.2000 1 149 1.8E-28 T 11-10-2018 VV93_v1c02840 9c25e9d83501973a753f08aae94fca10 344 Gene3D G3DSA:3.40.50.2000 163 335 2.3E-19 T 11-10-2018 VV93_v1c02840 9c25e9d83501973a753f08aae94fca10 344 SUPERFAMILY SSF53756 2 329 7.53E-65 T 11-10-2018 VV93_v1c02840 9c25e9d83501973a753f08aae94fca10 344 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 304 3.3E-15 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Gene3D G3DSA:3.30.360.10 625 795 6.3E-120 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 7.2E-129 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 PIRSF PIRSF000727 1 817 0.0 T 11-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 SUPERFAMILY SSF55347 614 797 2.03E-50 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Gene3D G3DSA:3.40.1160.10 3 295 1.3E-86 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 SUPERFAMILY SSF51735 463 636 1.58E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Pfam PF00696 Amino acid kinase family 2 284 1.4E-48 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 606 1.6E-26 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Gene3D G3DSA:1.20.120.1320 41 142 1.3E-86 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Gene3D G3DSA:3.40.50.720 467 811 6.3E-120 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 SUPERFAMILY SSF53633 1 298 5.54E-76 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 SUPERFAMILY SSF55021 383 476 1.9E-20 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Pfam PF00742 Homoserine dehydrogenase 614 810 1.9E-47 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 SUPERFAMILY SSF55021 303 381 7.85E-21 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Gene3D G3DSA:3.30.2130.10 302 464 9.0E-44 T 11-10-2018 VV93_v1c05890 ce8fb61f608d5949d6b44fba2e870d97 819 Pfam PF01842 ACT domain 324 377 5.2E-9 T 11-10-2018 IPR002912 ACT domain VV93_v1c35010 f61204ffa3a8d9761b8176dabfcd4144 94 SUPERFAMILY SSF54909 1 93 2.6E-27 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c35010 f61204ffa3a8d9761b8176dabfcd4144 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 73 4.0E-15 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VV93_v1c35010 f61204ffa3a8d9761b8176dabfcd4144 94 Gene3D G3DSA:3.30.70.100 1 94 5.0E-29 T 11-10-2018 VV93_v1c01450 f61204ffa3a8d9761b8176dabfcd4144 94 SUPERFAMILY SSF54909 1 93 2.6E-27 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c01450 f61204ffa3a8d9761b8176dabfcd4144 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 73 4.0E-15 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VV93_v1c01450 f61204ffa3a8d9761b8176dabfcd4144 94 Gene3D G3DSA:3.30.70.100 1 94 5.0E-29 T 11-10-2018 VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 5 560 1.1E-255 T 11-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 Gene3D G3DSA:3.30.300.160 62 140 2.3E-10 T 11-10-2018 VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 Gene3D G3DSA:3.30.450.90 151 289 9.1E-48 T 11-10-2018 VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 Pfam PF00437 Type II/IV secretion system protein 189 456 8.6E-88 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 Gene3D G3DSA:3.40.50.300 291 561 1.1E-105 T 11-10-2018 VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 384 398 - T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 SUPERFAMILY SSF52540 170 559 1.78E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 SUPERFAMILY SSF160246 2 140 8.37E-33 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VV93_v1c24900 6f688db713f5691265cb4b2fc4586998 562 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 38 141 2.5E-19 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal VV93_v1c32300 4b4876a564751e8c737e486389fddcf9 543 Pfam PF02018 Carbohydrate binding domain 21 135 5.2E-9 T 11-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 VV93_v1c32300 4b4876a564751e8c737e486389fddcf9 543 SUPERFAMILY SSF49785 23 164 2.21E-29 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c32300 4b4876a564751e8c737e486389fddcf9 543 Pfam PF04231 Endonuclease I 300 535 4.1E-101 T 11-10-2018 IPR007346 Endonuclease I GO:0004518 VV93_v1c32300 4b4876a564751e8c737e486389fddcf9 543 SUPERFAMILY SSF54060 296 535 4.47E-49 T 11-10-2018 VV93_v1c32300 4b4876a564751e8c737e486389fddcf9 543 Gene3D G3DSA:2.60.120.260 22 168 7.4E-15 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 Gene3D G3DSA:3.30.70.2350 1 70 2.1E-26 T 11-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 Gene3D G3DSA:1.20.1540.10 94 273 8.9E-53 T 11-10-2018 IPR035952 Rhomboid-like superfamily VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 3 272 5.1E-116 T 11-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 Pfam PF01694 Rhomboid family 133 271 1.3E-30 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 SUPERFAMILY SSF144091 96 275 6.8E-42 T 11-10-2018 VV93_v1c01060 34b128d7d1f2d5da0cd9d572ff4996c7 280 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 87 4.3E-34 T 11-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 VV93_v1c29820 a763e3cab7f55bf90a4c7c408c714df7 257 Gene3D G3DSA:3.40.50.300 1 255 7.2E-77 T 11-10-2018 VV93_v1c29820 a763e3cab7f55bf90a4c7c408c714df7 257 SUPERFAMILY SSF52540 2 254 5.57E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29820 a763e3cab7f55bf90a4c7c408c714df7 257 Pfam PF13614 AAA domain 2 178 2.1E-62 T 11-10-2018 IPR025669 AAA domain VV93_v1c29820 a763e3cab7f55bf90a4c7c408c714df7 257 PIRSF PIRSF009320 2 56 2.0E-13 T 11-10-2018 VV93_v1c29820 a763e3cab7f55bf90a4c7c408c714df7 257 PIRSF PIRSF009320 88 253 6.8E-9 T 11-10-2018 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 Pfam PF00108 Thiolase, N-terminal domain 4 263 4.2E-99 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 Gene3D G3DSA:3.40.47.10 126 398 2.1E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 PIRSF PIRSF000429 1 402 2.2E-131 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 Gene3D G3DSA:3.40.47.10 6 276 2.1E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 SUPERFAMILY SSF53901 271 399 1.04E-39 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 Pfam PF02803 Thiolase, C-terminal domain 271 399 1.9E-45 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 3.2E-148 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VV93_v1c41360 8a3dabb6c232f69c91af94d8835da99a 402 SUPERFAMILY SSF53901 4 270 1.55E-83 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c32550 b740ac80ae0ac88088c6dbdd36ef20e7 198 SUPERFAMILY SSF75217 1 197 1.83E-63 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c32550 b740ac80ae0ac88088c6dbdd36ef20e7 198 Pfam PF04013 Putative SAM-dependent RNA methyltransferase 1 197 1.1E-62 T 11-10-2018 IPR007158 tRNA (pseudouridine(54)-N(1))-methyltransferase, TrmY GO:0008175 VV93_v1c32550 b740ac80ae0ac88088c6dbdd36ef20e7 198 Hamap MF_00587 tRNA (pseudouridine(54)-N(1))-methyltransferase [trmY]. 1 198 26.199 T 11-10-2018 IPR007158 tRNA (pseudouridine(54)-N(1))-methyltransferase, TrmY GO:0008175 VV93_v1c32550 b740ac80ae0ac88088c6dbdd36ef20e7 198 Gene3D G3DSA:3.40.1280.10 1 198 1.1E-56 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 274 364 4.3E-17 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 SUPERFAMILY SSF102114 13 344 5.62E-45 T 11-10-2018 VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 178 401 5.0E-11 T 11-10-2018 VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 Pfam PF13186 Iron-sulfur cluster-binding domain 274 334 4.9E-6 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 Pfam PF04055 Radical SAM superfamily 24 188 3.3E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 Gene3D G3DSA:3.20.20.70 15 386 2.8E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44980 71b1dc73015344dec77a6fbfcd16e260 403 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 18 383 1.0E-151 T 11-10-2018 VV93_v1c23620 936434c9ba5ae617d65693463758eb89 477 Gene3D G3DSA:1.20.1740.10 5 471 3.0E-8 T 11-10-2018 VV93_v1c23620 936434c9ba5ae617d65693463758eb89 477 PIRSF PIRSF006060 1 475 3.4E-49 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c23620 936434c9ba5ae617d65693463758eb89 477 Pfam PF13520 Amino acid permease 11 439 1.3E-30 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 28 721 0.0 T 11-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Pfam PF00664 ABC transporter transmembrane region 172 438 1.5E-44 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Pfam PF00005 ABC transporter 500 649 7.2E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Gene3D G3DSA:1.20.1560.10 155 469 6.5E-72 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 SUPERFAMILY SSF90123 156 467 6.54E-65 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 SMART SM00382 509 695 1.3E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 ProSitePatterns PS00211 ABC transporters family signature. 621 635 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Gene3D G3DSA:3.90.70.10 27 146 2.0E-9 T 11-10-2018 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 SUPERFAMILY SSF52540 474 719 3.91E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Gene3D G3DSA:3.40.50.300 475 721 2.4E-88 T 11-10-2018 VV93_v1c39780 339077bd27517c9fa9e869ae63171396 722 Pfam PF03412 Peptidase C39 family 25 120 2.1E-6 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 VV93_v1c20300 6bf36a27b9588e82d89c393fb545f57b 232 PIRSF PIRSF037208 1 232 1.1E-83 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 VV93_v1c20300 6bf36a27b9588e82d89c393fb545f57b 232 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 6 231 35.479 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 VV93_v1c20300 6bf36a27b9588e82d89c393fb545f57b 232 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 16 86 5.2E-19 T 11-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 VV93_v1c20300 6bf36a27b9588e82d89c393fb545f57b 232 SUPERFAMILY SSF55729 80 231 1.17E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c20300 6bf36a27b9588e82d89c393fb545f57b 232 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 225 6.2E-32 T 11-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.03 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 Pfam PF00297 Ribosomal protein L3 49 182 9.0E-16 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 Gene3D G3DSA:2.40.30.10 129 209 5.6E-20 T 11-10-2018 VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 1.2E-94 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 SUPERFAMILY SSF50447 1 208 8.65E-84 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c03460 2ff5d8db50135fc9335f30d0c18f2254 209 Gene3D G3DSA:2.40.50.620 32 96 2.2E-15 T 11-10-2018 VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Pfam PF00753 Metallo-beta-lactamase superfamily 124 341 3.3E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Pfam PF14863 Alkyl sulfatase dimerisation 397 536 4.5E-37 T 11-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 SUPERFAMILY SSF55718 545 668 2.33E-26 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 SUPERFAMILY SSF56281 30 537 3.34E-108 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Gene3D G3DSA:1.25.40.880 396 536 2.1E-35 T 11-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Pfam PF14864 Alkyl sulfatase C-terminal 544 667 2.0E-25 T 11-10-2018 IPR029229 Alkyl sulfatase, C-terminal VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Gene3D G3DSA:3.60.15.30 30 395 7.7E-119 T 11-10-2018 VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 SMART SM00849 128 355 3.4E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c42690 7bf13612c943aef9a9db5924e930d253 674 Gene3D G3DSA:3.30.1050.10 538 671 8.1E-29 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 SMART SM00411 3 92 2.7E-40 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 95 29.664 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 5.6E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 5.6E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 5.6E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.0E-32 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 93 1.1E-50 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 Gene3D G3DSA:4.10.520.10 1 95 9.6E-38 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c17260 865e9819fcc2a4d125661095828c5df7 95 SUPERFAMILY SSF47729 3 93 3.53E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c25080 90c366577612ca1c992968851f457463 316 SMART SM00829 12 312 2.3E-14 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VV93_v1c25080 90c366577612ca1c992968851f457463 316 SUPERFAMILY SSF50129 4 154 1.0E-34 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c25080 90c366577612ca1c992968851f457463 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 6.4E-7 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 VV93_v1c25080 90c366577612ca1c992968851f457463 316 Gene3D G3DSA:3.90.180.10 10 310 2.4E-92 T 11-10-2018 VV93_v1c25080 90c366577612ca1c992968851f457463 316 Pfam PF13602 Zinc-binding dehydrogenase 191 312 6.0E-20 T 11-10-2018 VV93_v1c25080 90c366577612ca1c992968851f457463 316 SUPERFAMILY SSF51735 122 246 5.22E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c25080 90c366577612ca1c992968851f457463 316 Gene3D G3DSA:3.40.50.720 133 263 2.4E-92 T 11-10-2018 VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 SUPERFAMILY SSF56420 3 165 3.79E-63 T 11-10-2018 IPR036821 Peptide deformylase superfamily VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.215 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 PIRSF PIRSF004749 1 170 4.0E-58 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 Pfam PF01327 Polypeptide deformylase 4 152 2.0E-51 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 159 1.1E-62 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 Gene3D G3DSA:3.90.45.10 1 169 8.0E-67 T 11-10-2018 IPR036821 Peptide deformylase superfamily VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 PRINTS PR01576 Peptide deformylase signature 101 119 4.4E-38 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 PRINTS PR01576 Peptide deformylase signature 89 100 4.4E-38 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 PRINTS PR01576 Peptide deformylase signature 33 62 4.4E-38 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c29470 2bcbe0a5ab8661cee2cfa4d2faeb0b70 170 PRINTS PR01576 Peptide deformylase signature 120 149 4.4E-38 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 SUPERFAMILY SSF51230 81 156 5.1E-26 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 Gene3D G3DSA:2.40.50.100 78 156 2.6E-32 T 11-10-2018 VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 Pfam PF00364 Biotin-requiring enzyme 81 155 5.8E-25 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 7.0E-19 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 7.0E-19 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 7.0E-19 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 156 3.2E-62 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 VV93_v1c28530 6c58e50a74fce5ec497ee719dfd74098 156 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 112 129 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 SUPERFAMILY SSF54523 5 149 3.22E-15 T 11-10-2018 VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 PIRSF PIRSF024622 1 170 1.1E-82 T 11-10-2018 IPR016824 Tfp pilus assembly protein FimT VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 25 3.6E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 Pfam PF12019 Type II transport protein GspH 42 138 2.1E-8 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 24 2.6E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07760 ee7d51d7eac30c346e6c2871a51c45ce 170 Gene3D G3DSA:3.30.700.10 5 163 8.5E-10 T 11-10-2018 VV93_v1c35860 f4014385b4c1b6dc8ce182c13bfa584f 196 Gene3D G3DSA:3.60.40.10 5 192 5.2E-28 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c35860 f4014385b4c1b6dc8ce182c13bfa584f 196 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 31 192 2.5E-7 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c35860 f4014385b4c1b6dc8ce182c13bfa584f 196 SUPERFAMILY SSF81606 15 192 5.75E-7 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c11230 c2349a08b5ea724374657ba0f393e67e 306 Gene3D G3DSA:1.10.3720.10 85 301 1.0E-22 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c11230 c2349a08b5ea724374657ba0f393e67e 306 SUPERFAMILY SSF161098 89 291 6.0E-21 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c11230 c2349a08b5ea724374657ba0f393e67e 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 1.1E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 Pfam PF00664 ABC transporter transmembrane region 30 312 2.6E-31 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 Gene3D G3DSA:1.20.1560.10 11 340 6.8E-55 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 SUPERFAMILY SSF52540 357 592 1.17E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 SUPERFAMILY SSF90123 12 345 2.22E-56 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 Gene3D G3DSA:3.40.50.300 353 599 1.8E-81 T 11-10-2018 VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 SMART SM00382 385 572 6.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c15190 feef8eafe4a59645a5280784dc88a20b 599 Pfam PF00005 ABC transporter 376 524 3.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c16140 78bcc64520fec2293cb4f1e380767392 675 Gene3D G3DSA:1.10.287.950 347 675 1.4E-56 T 11-10-2018 VV93_v1c16140 78bcc64520fec2293cb4f1e380767392 675 SMART SM00283 412 673 1.2E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c16140 78bcc64520fec2293cb4f1e380767392 675 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 491 638 4.3E-36 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c16140 78bcc64520fec2293cb4f1e380767392 675 SUPERFAMILY SSF58104 372 673 8.89E-57 T 11-10-2018 VV93_v1c45530 6a1a04f09f9b8beab915962cb534cf7c 324 SMART SM00470 53 149 2.5E-6 T 11-10-2018 IPR003115 ParB/Sulfiredoxin VV93_v1c45530 6a1a04f09f9b8beab915962cb534cf7c 324 SUPERFAMILY SSF110849 75 150 1.41E-8 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VV93_v1c45530 6a1a04f09f9b8beab915962cb534cf7c 324 Pfam PF02195 ParB-like nuclease domain 77 145 3.1E-8 T 11-10-2018 IPR003115 ParB/Sulfiredoxin VV93_v1c45530 6a1a04f09f9b8beab915962cb534cf7c 324 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 67 231 3.8E-23 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 VV93_v1c45530 6a1a04f09f9b8beab915962cb534cf7c 324 Gene3D G3DSA:1.10.10.2830 153 271 2.2E-16 T 11-10-2018 VV93_v1c00650 5dd590d56622d5c7f77ad67fa81ea4e7 296 Pfam PF00892 EamA-like transporter family 138 276 2.0E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c00650 5dd590d56622d5c7f77ad67fa81ea4e7 296 SUPERFAMILY SSF103481 35 128 5.1E-5 T 11-10-2018 VV93_v1c00650 5dd590d56622d5c7f77ad67fa81ea4e7 296 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 1.4E-73 T 11-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 VV93_v1c00650 5dd590d56622d5c7f77ad67fa81ea4e7 296 SUPERFAMILY SSF103481 181 276 1.44E-5 T 11-10-2018 VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 SMART SM00382 39 233 5.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 Gene3D G3DSA:3.40.50.300 3 302 1.8E-79 T 11-10-2018 VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 264 4.7E-8 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 SUPERFAMILY SSF52540 5 254 4.69E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30140 f89a0b7fecbe4c7ce00de05fdb781150 310 Pfam PF00005 ABC transporter 30 184 8.2E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c15180 985ca56648434b4114b9164a323baf00 420 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 12 404 5.0E-104 T 11-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type VV93_v1c15180 985ca56648434b4114b9164a323baf00 420 Pfam PF04403 Paraquat-inducible protein A 250 406 1.1E-47 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like VV93_v1c15180 985ca56648434b4114b9164a323baf00 420 Pfam PF04403 Paraquat-inducible protein A 56 207 2.2E-35 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like VV93_v1c15180 985ca56648434b4114b9164a323baf00 420 SUPERFAMILY SSF48695 203 249 4.19E-5 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c06720 bf4798af052862345607b09ef224bad5 307 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 11 292 5.8E-73 T 11-10-2018 IPR011862 Phosphate binding protein GO:0042301 VV93_v1c06720 bf4798af052862345607b09ef224bad5 307 Pfam PF12849 PBP superfamily domain 23 279 1.1E-30 T 11-10-2018 IPR024370 PBP domain VV93_v1c06720 bf4798af052862345607b09ef224bad5 307 Gene3D G3DSA:3.40.190.10 109 251 6.9E-97 T 11-10-2018 VV93_v1c06720 bf4798af052862345607b09ef224bad5 307 SUPERFAMILY SSF53850 23 304 6.85E-65 T 11-10-2018 VV93_v1c06720 bf4798af052862345607b09ef224bad5 307 Gene3D G3DSA:3.40.190.10 24 295 6.9E-97 T 11-10-2018 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 SUPERFAMILY SSF52794 523 616 3.14E-28 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 Gene3D G3DSA:3.40.930.10 1 151 6.2E-41 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 526 616 2.6E-15 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 173 494 7.1E-79 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 144 8.8E-34 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 526 608 8.0E-28 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 Gene3D G3DSA:3.40.50.2300 518 619 8.9E-34 T 11-10-2018 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 131 1.4E-38 T 11-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 SUPERFAMILY SSF55804 2 144 3.53E-37 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31780 7154adcc4f39c7bcd1b62c9a48b4813e 619 Pfam PF02378 Phosphotransferase system, EIIC 186 444 1.7E-12 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 SUPERFAMILY SSF81593 818 945 1.49E-31 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 34 279 3.2E-92 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 555 807 2.8E-100 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:1.10.4050.10 9 112 1.4E-12 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:1.20.120.1510 450 563 2.2E-33 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 SUPERFAMILY SSF81301 527 817 4.9E-92 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 SUPERFAMILY SSF81301 24 289 5.32E-87 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 30 947 19.782 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:1.20.120.330 288 443 2.6E-54 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Pfam PF08335 GlnD PII-uridylyltransferase 828 914 7.1E-7 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Pfam PF08335 GlnD PII-uridylyltransferase 300 438 4.1E-45 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:1.20.120.330 814 948 8.5E-42 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 SUPERFAMILY SSF81593 290 439 4.55E-43 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:3.30.460.10 115 287 5.1E-66 T 11-10-2018 VV93_v1c05210 4ac92a307fdad0b365e073a99e7ab0c7 950 Gene3D G3DSA:3.30.460.100 564 813 6.1E-96 T 11-10-2018 VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 1.7E-34 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 PIRSF PIRSF004555 3 109 7.3E-40 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 SUPERFAMILY SSF82607 11 103 2.09E-36 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.506 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 Gene3D G3DSA:3.30.1310.10 1 109 2.3E-47 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VV93_v1c21170 dd0f153fb787553dbcb4e183f9cc8b87 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 4.0E-39 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family VV93_v1c20030 0702a605ad2757121a48beec34e3d8f5 501 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 24 183 4.1E-59 T 11-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices VV93_v1c20030 0702a605ad2757121a48beec34e3d8f5 501 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 255 498 4.9E-108 T 11-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase VV93_v1c00680 c12df03a7dc41c5e38940fe5b1698632 107 Pfam PF10625 Universal stress protein B (UspB) 1 106 4.3E-49 T 11-10-2018 IPR019598 Universal stress protein B VV93_v1c00680 c12df03a7dc41c5e38940fe5b1698632 107 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 36.994 T 11-10-2018 IPR019598 Universal stress protein B VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Pfam PF07732 Multicopper oxidase 46 157 3.9E-39 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Pfam PF07731 Multicopper oxidase 359 460 7.6E-26 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 ProSitePatterns PS00080 Multicopper oxidases signature 2. 443 454 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Gene3D G3DSA:2.60.40.420 9 154 9.5E-45 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 SUPERFAMILY SSF49503 313 460 6.27E-34 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 26 2.6E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 SUPERFAMILY SSF49503 32 156 4.08E-39 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Gene3D G3DSA:2.60.40.420 161 294 9.5E-22 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 SUPERFAMILY SSF49503 160 281 2.06E-16 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Pfam PF00394 Multicopper oxidase 172 284 9.9E-7 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 VV93_v1c29280 4a5925d2a7b7986246277d68ce66631e 461 Gene3D G3DSA:2.60.40.420 309 461 7.3E-37 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 Gene3D G3DSA:1.10.287.1050 1 83 9.8E-30 T 11-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 SMART SM00528 88 135 2.9E-25 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 PIRSF PIRSF002096 1 135 2.6E-54 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 Pfam PF00816 H-NS histone family 32 129 1.6E-19 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 SUPERFAMILY SSF81273 93 135 4.71E-12 T 11-10-2018 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 SUPERFAMILY SSF81273 2 58 3.14E-16 T 11-10-2018 VV93_v1c12600 eb8474f5d2e4551f07bd3f970c3d5ddf 135 Gene3D G3DSA:4.10.430.10 92 135 8.3E-25 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Gene3D G3DSA:3.30.565.10 282 430 1.9E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SMART SM00388 205 272 1.2E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Pfam PF11808 Domain of unknown function (DUF3329) 7 91 5.1E-31 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 424 7.9E-138 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 271 1.6E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 427 5.7E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Gene3D G3DSA:3.30.450.20 85 200 1.3E-9 T 11-10-2018 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SUPERFAMILY SSF55785 86 197 1.08E-11 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SUPERFAMILY SSF55874 261 427 3.27E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SUPERFAMILY SSF47384 192 272 1.31E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 5.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 5.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 5.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 5.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Pfam PF00989 PAS fold 99 187 2.0E-7 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 Gene3D G3DSA:1.10.287.130 201 275 1.2E-20 T 11-10-2018 VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SMART SM00091 98 164 1.7E-5 T 11-10-2018 IPR000014 PAS domain VV93_v1c06710 aaf6420b83991779f61d652157cae3a8 432 SMART SM00387 317 429 3.3E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Gene3D G3DSA:1.10.1130.10 171 242 2.7E-5 T 11-10-2018 VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Gene3D G3DSA:1.10.1130.10 34 165 1.2E-6 T 11-10-2018 VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 248 283 3.7E-10 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 208 240 3.4E-8 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 201 241 1.2E-11 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 248 283 3.5E-11 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 87 143 9.4E-7 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 157 191 2.0E-6 T 11-10-2018 IPR010177 Doubled CXXCH motif VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 SUPERFAMILY SSF48695 58 307 1.86E-49 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 Gene3D G3DSA:3.90.10.10 244 319 8.4E-6 T 11-10-2018 VV93_v1c36410 5698a2c26930843e624b33ba3096e13c 323 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 56 316 2.5E-96 T 11-10-2018 IPR020015 Decaheme cytochrome, c-type, DmsE VV93_v1c14200 5c3a095205b76df9f7ac2c93f7ea1514 434 SUPERFAMILY SSF53850 26 421 6.52E-69 T 11-10-2018 VV93_v1c14200 5c3a095205b76df9f7ac2c93f7ea1514 434 Pfam PF13416 Bacterial extracellular solute-binding protein 45 367 2.9E-38 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c14200 5c3a095205b76df9f7ac2c93f7ea1514 434 Gene3D G3DSA:3.40.190.10 30 380 1.6E-113 T 11-10-2018 VV93_v1c14200 5c3a095205b76df9f7ac2c93f7ea1514 434 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 141 158 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 VV93_v1c14200 5c3a095205b76df9f7ac2c93f7ea1514 434 Gene3D G3DSA:3.40.190.10 146 419 1.6E-113 T 11-10-2018 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 Gene3D G3DSA:1.10.300.10 99 200 2.2E-72 T 11-10-2018 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 Gene3D G3DSA:3.90.170.10 266 418 4.1E-51 T 11-10-2018 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 418 141.926 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 SUPERFAMILY SSF52540 1 417 6.37E-121 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 Pfam PF00709 Adenylosuccinate synthetase 4 416 1.5E-131 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 Gene3D G3DSA:3.40.440.10 6 255 2.2E-72 T 11-10-2018 VV93_v1c41600 d7051727c9aada2f6642b4dde302ff27 418 SMART SM00788 3 417 4.9E-177 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c33310 866bfd9165a21335fd3679441f1eac21 393 Gene3D G3DSA:1.20.1250.20 200 386 6.4E-15 T 11-10-2018 VV93_v1c33310 866bfd9165a21335fd3679441f1eac21 393 Pfam PF07690 Major Facilitator Superfamily 16 345 1.2E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c33310 866bfd9165a21335fd3679441f1eac21 393 Gene3D G3DSA:1.20.1250.20 4 196 3.3E-6 T 11-10-2018 VV93_v1c33310 866bfd9165a21335fd3679441f1eac21 393 SUPERFAMILY SSF103473 1 381 1.83E-36 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c30820 8f0cce8704f5d2d4b7dfdf7ebbdda6af 199 SUPERFAMILY SSF52833 42 196 8.54E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c30820 8f0cce8704f5d2d4b7dfdf7ebbdda6af 199 Gene3D G3DSA:3.40.30.10 25 197 9.6E-38 T 11-10-2018 VV93_v1c30820 8f0cce8704f5d2d4b7dfdf7ebbdda6af 199 Pfam PF02630 SCO1/SenC 19 177 1.9E-33 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c19210 2e279eb380d629d0c902b575b4baa19f 436 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 26 428 2.3E-144 T 11-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 VV93_v1c19210 2e279eb380d629d0c902b575b4baa19f 436 Gene3D G3DSA:1.20.1250.20 24 239 2.3E-57 T 11-10-2018 VV93_v1c19210 2e279eb380d629d0c902b575b4baa19f 436 SUPERFAMILY SSF103473 25 423 2.35E-30 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c19210 2e279eb380d629d0c902b575b4baa19f 436 Gene3D G3DSA:1.20.1250.20 245 433 1.3E-46 T 11-10-2018 VV93_v1c19210 2e279eb380d629d0c902b575b4baa19f 436 Pfam PF07690 Major Facilitator Superfamily 32 372 2.8E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 Hamap MF_00550 Peptidase T [pepT]. 1 404 56.543 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 3 406 1.5E-155 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 Pfam PF07687 Peptidase dimerisation domain 206 281 1.7E-8 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 Pfam PF01546 Peptidase family M20/M25/M40 139 401 4.6E-13 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 Gene3D G3DSA:3.40.630.10 4 400 2.4E-175 T 11-10-2018 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 SUPERFAMILY SSF53187 1 406 2.88E-80 T 11-10-2018 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 SUPERFAMILY SSF55031 209 320 1.99E-38 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 Gene3D G3DSA:3.30.70.360 209 319 2.4E-175 T 11-10-2018 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 PIRSF PIRSF037215 1 408 2.6E-182 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 VV93_v1c40230 57874845a095db0dfe694aa8f5252670 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 177 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Gene3D G3DSA:3.30.70.3380 368 478 6.5E-39 T 11-10-2018 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 SUPERFAMILY SSF54980 399 493 1.97E-24 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 SMART SM00838 398 486 0.0072 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Gene3D G3DSA:2.40.30.10 186 285 5.2E-34 T 11-10-2018 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 304.737 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.8E-49 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 SUPERFAMILY SSF54980 292 370 2.09E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 SUPERFAMILY SSF52540 2 205 1.86E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Gene3D G3DSA:3.30.70.2570 479 553 5.3E-33 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 176 6.0E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 SUPERFAMILY SSF50447 165 288 5.3E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Pfam PF00679 Elongation factor G C-terminus 399 483 6.9E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Gene3D G3DSA:3.40.50.300 1 185 7.5E-71 T 11-10-2018 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 8.7E-9 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 3.5E-299 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.7E-53 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c25420 0a2455c0fa3cc1de0549b68fc32f5e03 597 Gene3D G3DSA:3.30.70.870 286 367 2.3E-35 T 11-10-2018 VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 Gene3D G3DSA:1.10.150.130 102 206 8.7E-7 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 Gene3D G3DSA:1.10.443.10 211 400 1.3E-37 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 Pfam PF13356 Arm DNA-binding domain 8 100 6.8E-13 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 Pfam PF00589 Phage integrase family 217 382 2.0E-32 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 SUPERFAMILY SSF56349 108 384 5.0E-50 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c26260 dabd94512c1a8a317311e2f9def7b9ea 408 Gene3D G3DSA:3.30.160.390 6 101 9.7E-12 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 SMART SM00062 33 257 7.5E-37 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 SUPERFAMILY SSF53850 1 255 1.93E-50 T 11-10-2018 VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 Gene3D G3DSA:3.40.190.10 25 244 5.6E-63 T 11-10-2018 VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 Gene3D G3DSA:3.40.190.10 120 211 5.6E-63 T 11-10-2018 VV93_v1c29690 d70d92bbe4e9ddde7d1b659ad2fb0454 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 254 1.0E-37 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c22620 1aa3ae29fd11cf290d33deb1c5ff17e3 207 Pfam PF01351 Ribonuclease HII 22 198 8.9E-40 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain VV93_v1c22620 1aa3ae29fd11cf290d33deb1c5ff17e3 207 Hamap MF_00052_B Ribonuclease HII [rnhB]. 20 199 37.927 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 VV93_v1c22620 1aa3ae29fd11cf290d33deb1c5ff17e3 207 SUPERFAMILY SSF53098 14 204 1.97E-71 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c22620 1aa3ae29fd11cf290d33deb1c5ff17e3 207 Gene3D G3DSA:3.30.420.10 4 207 4.7E-80 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 PRINTS PR00046 Major sigma-70 factor signature 207 222 2.1E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 PRINTS PR00046 Major sigma-70 factor signature 222 233 2.1E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 PRINTS PR00046 Major sigma-70 factor signature 46 59 2.1E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 PRINTS PR00046 Major sigma-70 factor signature 190 202 2.1E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Pfam PF04542 Sigma-70 region 2 19 91 4.8E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Pfam PF04545 Sigma-70, region 4 187 234 2.5E-17 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 PIRSF PIRSF000770 3 243 2.4E-37 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Gene3D G3DSA:1.10.1740.10 4 88 2.2E-28 T 11-10-2018 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 SUPERFAMILY SSF88659 161 239 1.25E-19 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Gene3D G3DSA:1.20.140.160 90 239 4.5E-43 T 11-10-2018 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 19 238 3.1E-84 T 11-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 237 3.9E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 SUPERFAMILY SSF88659 92 159 1.09E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 SUPERFAMILY SSF88946 6 91 2.75E-24 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Pfam PF04539 Sigma-70 region 3 101 171 3.3E-12 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 VV93_v1c21670 19c20735a79bb1141cb020bddb97b963 244 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 240 63.819 T 11-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 VV93_v1c02850 2bd40e6fdbdf82360f92989b35cf78a0 263 SUPERFAMILY SSF53448 6 147 7.29E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c02850 2bd40e6fdbdf82360f92989b35cf78a0 263 Gene3D G3DSA:3.90.550.10 1 171 2.9E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c02850 2bd40e6fdbdf82360f92989b35cf78a0 263 Pfam PF00535 Glycosyl transferase family 2 12 115 1.8E-13 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 SUPERFAMILY SSF55424 344 466 9.28E-35 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 328 9.7E-53 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 SUPERFAMILY SSF52821 458 562 6.16E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Gene3D G3DSA:3.40.250.10 471 563 2.4E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 SUPERFAMILY SSF51905 2 197 4.51E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Gene3D G3DSA:3.50.50.60 3 361 3.6E-186 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Pfam PF00581 Rhodanese-like domain 483 562 3.7E-10 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 5.1E-23 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 5.1E-23 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 5.1E-23 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 5.1E-23 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 5.1E-23 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Gene3D G3DSA:3.50.50.60 115 461 3.6E-186 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 350 451 1.0E-16 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 SMART SM00450 473 565 2.0E-13 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 SUPERFAMILY SSF51905 155 341 2.0E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 2.2E-19 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 2.2E-19 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 2.2E-19 T 11-10-2018 VV93_v1c38460 ea834d388711ce6468131d4d2ced001d 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 2.2E-19 T 11-10-2018 VV93_v1c32170 36eff2cb3625ed4ec956d9a71650cc43 240 Gene3D G3DSA:3.40.109.10 1 240 7.3E-74 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c32170 36eff2cb3625ed4ec956d9a71650cc43 240 SUPERFAMILY SSF55469 1 239 1.3E-72 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c32170 36eff2cb3625ed4ec956d9a71650cc43 240 PIRSF PIRSF005426 1 240 5.1E-83 T 11-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 VV93_v1c32170 36eff2cb3625ed4ec956d9a71650cc43 240 Pfam PF00881 Nitroreductase family 9 159 2.5E-22 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 Pfam PF00271 Helicase conserved C-terminal domain 230 338 5.9E-27 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 Gene3D G3DSA:3.40.50.300 1 209 4.1E-75 T 11-10-2018 VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 SUPERFAMILY SSF52540 73 359 1.22E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 SMART SM00490 257 338 2.0E-31 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 Gene3D G3DSA:3.40.50.300 214 436 1.2E-45 T 11-10-2018 VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 Pfam PF00270 DEAD/DEAH box helicase 26 194 3.7E-47 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 SMART SM00487 20 221 4.1E-63 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c40960 2fb65f6ca1641a06301948064b88456a 509 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 507 51.043 T 11-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 SUPERFAMILY SSF53633 4 294 3.63E-66 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 Pfam PF00696 Amino acid kinase family 25 270 6.0E-27 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 SUPERFAMILY SSF55729 300 424 2.3E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 Gene3D G3DSA:3.40.1160.10 7 296 2.5E-84 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 Gene3D G3DSA:3.40.630.30 297 445 8.9E-37 T 11-10-2018 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 445 4.7E-207 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 445 224.77 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 PIRSF PIRSF000423 1 445 7.9E-205 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 VV93_v1c23260 3144eac66b3e54401b5ca65a215a0564 445 Pfam PF00583 Acetyltransferase (GNAT) family 331 416 4.5E-8 T 11-10-2018 IPR000182 GNAT domain VV93_v1c31340 b52e2011510a1a311c35353b187ad6ce 324 Gene3D G3DSA:1.10.3720.10 89 316 8.8E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31340 b52e2011510a1a311c35353b187ad6ce 324 SUPERFAMILY SSF161098 93 311 4.41E-15 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31340 b52e2011510a1a311c35353b187ad6ce 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 323 5.3E-35 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24440 b81ae138edca531aaae048e2aa493e36 361 Pfam PF01594 AI-2E family transporter 14 347 1.0E-52 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like VV93_v1c14920 ffaed7d8ee619e43a3b05861816b35d3 409 Gene3D G3DSA:3.90.550.10 32 294 7.4E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c14920 ffaed7d8ee619e43a3b05861816b35d3 409 Pfam PF13641 Glycosyltransferase like family 2 66 286 4.4E-13 T 11-10-2018 VV93_v1c14920 ffaed7d8ee619e43a3b05861816b35d3 409 SUPERFAMILY SSF53448 56 330 5.91E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 SUPERFAMILY SSF56784 1 270 5.93E-64 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 267 8.1E-67 T 11-10-2018 VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 220 242 - T 11-10-2018 VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 Gene3D G3DSA:3.40.50.1000 3 267 9.9E-61 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 239 1.2E-19 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 267 1.1E-54 T 11-10-2018 IPR000150 Cof family GO:0016787 VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 Gene3D G3DSA:3.30.1240.10 82 195 9.9E-61 T 11-10-2018 VV93_v1c44770 3264e8919a00beb218b88c28d41dba59 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:1.20.1640.10 12 502 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.2090.10 182 275 2.0E-244 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82866 792 1012 1.44E-44 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.70.1320 138 328 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82714 187 269 5.1E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82714 711 788 6.02E-11 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.70.1430 557 655 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82693 138 324 1.02E-18 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82866 295 495 7.59E-32 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:1.20.1640.10 503 1005 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82693 41 137 3.66E-17 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 4.4E-23 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Pfam PF00873 AcrB/AcrD/AcrF family 5 1007 2.7E-163 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.70.1440 656 855 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.70.1430 40 805 2.0E-244 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 SUPERFAMILY SSF82693 557 651 2.62E-6 T 11-10-2018 VV93_v1c35430 58ee3252078df4b4b3558fd0d8d2f7f4 1016 Gene3D G3DSA:3.30.2090.10 707 797 2.0E-244 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 5 326 35.223 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 106 134 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Gene3D G3DSA:2.160.10.10 100 308 8.4E-64 T 11-10-2018 VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 1.2E-9 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 257 0.0029 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.9E-9 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Gene3D G3DSA:3.40.1390.10 1 99 2.2E-31 T 11-10-2018 VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 4.1E-116 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 SUPERFAMILY SSF51161 32 316 9.89E-84 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c22660 d57a706948373c45fdff4352a97288ae 343 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 24 88 4.7E-22 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 VV93_v1c33180 83256b5bb7293809084f6cae33fbfb47 436 SUPERFAMILY SSF56954 4 419 1.83E-84 T 11-10-2018 VV93_v1c33180 83256b5bb7293809084f6cae33fbfb47 436 Gene3D G3DSA:1.20.1600.10 21 427 1.5E-80 T 11-10-2018 VV93_v1c33180 83256b5bb7293809084f6cae33fbfb47 436 Pfam PF02321 Outer membrane efflux protein 236 417 1.1E-34 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c33180 83256b5bb7293809084f6cae33fbfb47 436 Pfam PF02321 Outer membrane efflux protein 22 213 2.8E-27 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c33180 83256b5bb7293809084f6cae33fbfb47 436 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 432 1.3E-91 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 SUPERFAMILY SSF141868 5 193 3.79E-30 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 SUPERFAMILY SSF109604 181 400 2.29E-43 T 11-10-2018 VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 Pfam PF08668 HDOD domain 205 319 2.9E-12 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 SMART SM00052 2 195 1.1E-4 T 11-10-2018 IPR001633 EAL domain VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 Gene3D G3DSA:3.20.20.450 4 196 6.4E-20 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 PIRSF PIRSF003180 1 403 8.8E-172 T 11-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 Gene3D G3DSA:1.10.3210.10 197 396 1.5E-20 T 11-10-2018 VV93_v1c12720 0f608f74a9cf6ce76d3fa32746821938 404 Pfam PF00563 EAL domain 75 190 7.2E-17 T 11-10-2018 IPR001633 EAL domain VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 892 1.8E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 1.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 1.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 1.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 SUPERFAMILY SSF48452 442 805 2.47E-155 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 Gene3D G3DSA:3.40.50.300 11 166 2.1E-6 T 11-10-2018 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 Gene3D G3DSA:1.10.10.10 829 900 1.6E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 40.729 T 11-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 SMART SM00421 836 893 7.1E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 SUPERFAMILY SSF52540 25 230 8.11E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 SUPERFAMILY SSF46894 831 894 9.18E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c30870 9dde0ec9fa8d45442b9ff46d5c9dbff2 902 Gene3D G3DSA:1.25.40.10 443 811 4.1E-83 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 2 215 35.767 T 11-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 SUPERFAMILY SSF53335 3 214 5.74E-53 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 Gene3D G3DSA:3.40.50.150 1 216 1.6E-59 T 11-10-2018 VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 PIRSF PIRSF023956 2 217 8.1E-72 T 11-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 3 215 1.1E-73 T 11-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 VV93_v1c17240 7d863fa4affa7eb0bb8bf7ca4b97ebea 217 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 5 213 2.0E-77 T 11-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 VV93_v1c12860 2583c7a597ce1ce5cc145b905f40e89f 59 Pfam PF06796 Periplasmic nitrate reductase protein NapE 5 55 7.4E-26 T 11-10-2018 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE VV93_v1c12860 2583c7a597ce1ce5cc145b905f40e89f 59 TIGRFAM TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein 9 57 7.9E-30 T 11-10-2018 IPR014316 Trimethylamine N-oxide reductase system, TorE VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 SUPERFAMILY SSF46785 4 88 2.86E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 Gene3D G3DSA:1.10.10.10 3 90 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 SUPERFAMILY SSF53850 92 286 3.08E-29 T 11-10-2018 VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 Gene3D G3DSA:3.40.190.290 92 284 3.7E-37 T 11-10-2018 VV93_v1c43850 b7ab6ac7e28b4bbf44fe8b7a8cef9317 286 Pfam PF03466 LysR substrate binding domain 89 285 2.1E-26 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 Pfam PF03737 Aldolase/RraA 6 152 2.1E-40 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 Gene3D G3DSA:3.50.30.40 1 161 3.0E-63 T 11-10-2018 VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 8.5E-69 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.777 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 SUPERFAMILY SSF89562 2 158 6.02E-48 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VV93_v1c27460 1182860fec68453a478cde89bc14cc43 173 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 159 1.6E-81 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 VV93_v1c27330 5fca0265bf46c193923398cf195c28f7 179 SUPERFAMILY SSF46785 3 176 3.27E-45 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c27330 5fca0265bf46c193923398cf195c28f7 179 Pfam PF10400 Virulence activator alpha C-term 92 176 7.6E-16 T 11-10-2018 IPR018309 Transcription regulator PadR, C-terminal VV93_v1c27330 5fca0265bf46c193923398cf195c28f7 179 Pfam PF03551 Transcriptional regulator PadR-like family 7 80 1.1E-15 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal VV93_v1c27330 5fca0265bf46c193923398cf195c28f7 179 Gene3D G3DSA:1.10.10.10 1 89 6.4E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 SUPERFAMILY SSF50346 98 174 1.96E-20 T 11-10-2018 IPR011033 PRC-barrel-like superfamily VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 Pfam PF05239 PRC-barrel domain 95 160 5.3E-12 T 11-10-2018 IPR027275 PRC-barrel domain VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 Gene3D G3DSA:2.40.30.60 1 92 5.3E-32 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 Pfam PF01782 RimM N-terminal domain 7 87 2.4E-24 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 174 24.06 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 6 174 9.2E-56 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 SUPERFAMILY SSF50447 4 92 1.41E-23 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c24980 cc841df7bc1d00c2d8bde211b22264a1 174 Gene3D G3DSA:2.30.30.240 93 174 3.6E-31 T 11-10-2018 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 PRINTS PR00799 Aspartate aminotransferase signature 270 295 1.3E-28 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 PRINTS PR00799 Aspartate aminotransferase signature 172 191 1.3E-28 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 PRINTS PR00799 Aspartate aminotransferase signature 203 215 1.3E-28 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 PRINTS PR00799 Aspartate aminotransferase signature 338 356 1.3E-28 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 Gene3D G3DSA:3.90.1150.10 11 389 5.4E-137 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 SUPERFAMILY SSF53383 1 395 1.93E-100 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 Pfam PF00155 Aminotransferase class I and II 27 389 4.6E-67 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c38350 ad78fcafe7bf4769165c9d34a666aaed 395 Gene3D G3DSA:3.40.640.10 45 312 5.4E-137 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c33140 40b586a5900843e6a0a7f8f8e5bd3a83 120 SUPERFAMILY SSF101756 18 120 4.05E-33 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily VV93_v1c33140 40b586a5900843e6a0a7f8f8e5bd3a83 120 Pfam PF04076 Bacterial OB fold (BOF) protein 22 119 8.0E-32 T 11-10-2018 IPR005220 Bacterial OB-fold VV93_v1c33140 40b586a5900843e6a0a7f8f8e5bd3a83 120 Gene3D G3DSA:2.40.50.200 15 120 1.7E-35 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily VV93_v1c45410 f06d0986f07b66af5cb8545019cd8d28 99 Gene3D G3DSA:3.30.750.24 3 99 3.8E-19 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c45410 f06d0986f07b66af5cb8545019cd8d28 99 SUPERFAMILY SSF52091 7 98 1.28E-21 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c45410 f06d0986f07b66af5cb8545019cd8d28 99 Pfam PF01740 STAS domain 6 96 2.7E-10 T 11-10-2018 IPR002645 STAS domain VV93_v1c27790 0e330497708bf3edf7068a380d1c9f28 263 Gene3D G3DSA:3.10.180.50 3 239 4.4E-90 T 11-10-2018 VV93_v1c27790 0e330497708bf3edf7068a380d1c9f28 263 Pfam PF07063 Domain of unknown function (DUF1338) 30 261 3.6E-46 T 11-10-2018 IPR009770 Domain of unknown function DUF1338 VV93_v1c27790 0e330497708bf3edf7068a380d1c9f28 263 SMART SM01150 3 262 1.4E-109 T 11-10-2018 IPR009770 Domain of unknown function DUF1338 VV93_v1c20330 0bd5ea38543ca96da78d256df0706480 106 Gene3D G3DSA:3.30.1390.10 1 106 6.3E-45 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VV93_v1c20330 0bd5ea38543ca96da78d256df0706480 106 SUPERFAMILY SSF54736 21 105 6.8E-32 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VV93_v1c20330 0bd5ea38543ca96da78d256df0706480 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 3.7E-34 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 VV93_v1c20330 0bd5ea38543ca96da78d256df0706480 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 8 101 27.258 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 SUPERFAMILY SSF74653 160 237 4.58E-23 T 11-10-2018 VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 162 239 1.3E-23 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 163 239 2.1E-21 T 11-10-2018 IPR006260 TonB/TolA, C-terminal VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 PRINTS PR01374 Gram-negative bacterial tonB protein signature 157 178 9.0E-6 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 PRINTS PR01374 Gram-negative bacterial tonB protein signature 178 196 9.0E-6 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 PRINTS PR01374 Gram-negative bacterial tonB protein signature 72 82 9.0E-6 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c34100 b4ae22b5c298a185735fae8505dca407 240 Gene3D G3DSA:3.30.1150.10 137 240 1.1E-23 T 11-10-2018 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 261 279 8.4E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 8.4E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 8.4E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 Gene3D G3DSA:3.40.50.1170 1 209 1.1E-92 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 Gene3D G3DSA:3.40.50.40 210 337 3.4E-46 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 Pfam PF00710 Asparaginase, N-terminal 5 191 7.5E-67 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 PIRSF PIRSF001220 1 335 2.6E-95 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 PIRSF PIRSF500176 2 333 4.3E-109 T 11-10-2018 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 4 336 2.2E-118 T 11-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 SUPERFAMILY SSF53774 3 336 6.67E-114 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 VV93_v1c10690 fcb0eac667fa71c4ef3bac99f2d3780e 337 SMART SM00870 5 324 1.8E-139 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 SMART SM00893 23 220 5.4E-53 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 PIRSF PIRSF000090 1 258 2.1E-78 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 SUPERFAMILY SSF52402 2 251 3.84E-73 T 11-10-2018 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 164 184 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 Pfam PF01012 Electron transfer flavoprotein domain 29 214 4.1E-39 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VV93_v1c39680 738969fae534e4e0b4ac20e13eb3c74a 258 Gene3D G3DSA:3.40.50.620 1 257 2.1E-77 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c16410 60a388c1c31a55afbfd5e21ec9d0e5f4 157 Pfam PF13419 Haloacid dehalogenase-like hydrolase 28 132 1.3E-12 T 11-10-2018 VV93_v1c16410 60a388c1c31a55afbfd5e21ec9d0e5f4 157 SUPERFAMILY SSF56784 1 136 4.64E-25 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c16410 60a388c1c31a55afbfd5e21ec9d0e5f4 157 Gene3D G3DSA:3.40.50.1000 2 157 4.7E-32 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c33280 f85756fb69005a537b2bbee8e6e8e554 91 SUPERFAMILY SSF55729 3 89 5.32E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c33280 f85756fb69005a537b2bbee8e6e8e554 91 Pfam PF14542 GCN5-related N-acetyl-transferase 13 89 8.0E-23 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase VV93_v1c33280 f85756fb69005a537b2bbee8e6e8e554 91 Gene3D G3DSA:3.40.630.30 1 90 3.7E-23 T 11-10-2018 VV93_v1c41560 0b485147357976f850290c945eec770c 350 SUPERFAMILY SSF56935 25 350 2.62E-32 T 11-10-2018 VV93_v1c41560 0b485147357976f850290c945eec770c 350 Gene3D G3DSA:2.40.160.10 62 350 8.4E-8 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c35570 219deb88f7f0c77ddcea4a87db11d519 213 SUPERFAMILY SSF55961 19 203 8.86E-41 T 11-10-2018 VV93_v1c35570 219deb88f7f0c77ddcea4a87db11d519 213 PIRSF PIRSF039033 2 213 4.6E-65 T 11-10-2018 IPR028347 START domain-containing protein VV93_v1c35570 219deb88f7f0c77ddcea4a87db11d519 213 Pfam PF01852 START domain 23 205 5.5E-11 T 11-10-2018 IPR002913 START domain GO:0008289 VV93_v1c35570 219deb88f7f0c77ddcea4a87db11d519 213 Gene3D G3DSA:3.30.530.20 24 210 7.4E-51 T 11-10-2018 IPR023393 START-like domain superfamily VV93_v1c23750 a963990a267c6961c2451445287cbe12 406 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 17 61 2.0E-10 T 11-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal VV93_v1c11070 dff030101bbaf8e50ffd0ae92dd5c123 230 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 208 7.8E-88 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 VV93_v1c11070 dff030101bbaf8e50ffd0ae92dd5c123 230 PIRSF PIRSF006102 1 219 5.9E-79 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c11070 dff030101bbaf8e50ffd0ae92dd5c123 230 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.186 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 VV93_v1c11070 dff030101bbaf8e50ffd0ae92dd5c123 230 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 200 3.6E-66 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 Pfam PF00343 Carbohydrate phosphorylase 99 812 0.0 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 PIRSF PIRSF000460 1 817 4.7E-211 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 656 668 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 Gene3D G3DSA:3.40.50.2000 5 474 3.7E-192 T 11-10-2018 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 SUPERFAMILY SSF53756 8 815 0.0 T 11-10-2018 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 11 812 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 VV93_v1c30890 ffd2041113981fb88b36cc982bb93dc1 817 Gene3D G3DSA:3.40.50.2000 475 797 2.6E-142 T 11-10-2018 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 SUPERFAMILY SSF56784 10 195 1.27E-42 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 Gene3D G3DSA:1.10.150.240 22 92 2.2E-43 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 104 189 8.1E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 9 189 2.6E-63 T 11-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 Gene3D G3DSA:3.40.50.1000 12 192 2.2E-43 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 151 171 1.2E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 149 1.2E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 1.2E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c40180 a481a4c6f8c66ee159ab0bc906fe8b45 200 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 189 1.1E-26 T 11-10-2018 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 417 428 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 447 4.0E-190 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 140 283 5.6E-48 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 SUPERFAMILY SSF46548 336 446 5.89E-20 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Gene3D G3DSA:1.10.1060.10 364 445 5.2E-12 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 769 246.959 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Pfam PF12838 4Fe-4S dicluster domain 378 430 2.3E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 SUPERFAMILY SSF142019 96 302 2.09E-59 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 116 1.3E-36 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Pfam PF10531 SLBB domain 296 345 3.9E-10 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c11100 429c7f49d217382277a132660aab9fc8 841 Gene3D G3DSA:3.40.50.11540 145 291 4.6E-13 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c37660 59c732f4c1b7f7b0c8c3eeaca688c811 311 SUPERFAMILY SSF50891 185 295 3.68E-9 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c37660 59c732f4c1b7f7b0c8c3eeaca688c811 311 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 29 291 1.8E-80 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VV93_v1c37660 59c732f4c1b7f7b0c8c3eeaca688c811 311 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 6 292 8.0E-77 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VV93_v1c37660 59c732f4c1b7f7b0c8c3eeaca688c811 311 Gene3D G3DSA:2.40.100.10 182 309 1.7E-41 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c37660 59c732f4c1b7f7b0c8c3eeaca688c811 311 SMART SM00797 27 308 9.2E-130 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B VV93_v1c35560 d3f6658bf34b77ef200efc2e4a3160c1 299 SUPERFAMILY SSF103481 207 283 6.54E-8 T 11-10-2018 VV93_v1c35560 d3f6658bf34b77ef200efc2e4a3160c1 299 TIGRFAM TIGR00688 rarD: protein RarD 7 259 1.1E-48 T 11-10-2018 IPR004626 RarD protein GO:0005887 VV93_v1c35560 d3f6658bf34b77ef200efc2e4a3160c1 299 Pfam PF00892 EamA-like transporter family 152 283 1.2E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c35560 d3f6658bf34b77ef200efc2e4a3160c1 299 Pfam PF00892 EamA-like transporter family 7 139 8.0E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c35560 d3f6658bf34b77ef200efc2e4a3160c1 299 SUPERFAMILY SSF103481 62 140 1.57E-9 T 11-10-2018 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 SUPERFAMILY SSF46894 178 246 6.8E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 Gene3D G3DSA:1.10.10.10 140 248 5.0E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 Pfam PF00196 Bacterial regulatory proteins, luxR family 185 239 1.3E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 217 1.8E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 229 1.8E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 201 1.8E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c32200 104c338392cd9107c886ec4a6b3752df 251 SMART SM00421 184 241 1.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c03440 a82fb5af78f5c385fa9d3acf1a5ef316 1517 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 1184 1469 3.1E-40 T 11-10-2018 IPR031161 Peptidase family M60 domain VV93_v1c03440 a82fb5af78f5c385fa9d3acf1a5ef316 1517 Gene3D G3DSA:1.10.390.30 1316 1473 2.4E-11 T 11-10-2018 VV93_v1c03440 a82fb5af78f5c385fa9d3acf1a5ef316 1517 SMART SM01276 1083 1386 4.9E-88 T 11-10-2018 IPR031161 Peptidase family M60 domain VV93_v1c03440 a82fb5af78f5c385fa9d3acf1a5ef316 1517 Pfam PF13322 Domain of unknown function (DUF4092) 383 556 1.6E-91 T 11-10-2018 IPR025385 Domain of unknown function DUF4092 VV93_v1c03440 a82fb5af78f5c385fa9d3acf1a5ef316 1517 Pfam PF17291 N-terminal domain of M60-like peptidases 1080 1162 5.3E-8 T 11-10-2018 IPR035423 M60-like domain, N-terminal VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 Pfam PF01546 Peptidase family M20/M25/M40 72 374 1.4E-31 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 Gene3D G3DSA:3.40.630.10 25 360 1.3E-79 T 11-10-2018 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 SUPERFAMILY SSF53187 3 377 1.09E-54 T 11-10-2018 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 106 143 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 378 64.146 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 Gene3D G3DSA:3.30.70.360 177 292 1.3E-79 T 11-10-2018 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 8 372 1.6E-127 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 Pfam PF07687 Peptidase dimerisation domain 174 285 2.0E-24 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c27310 3ad91e66cefeae4d270ac35e704625d0 378 SUPERFAMILY SSF55031 177 291 1.64E-22 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Gene3D G3DSA:3.30.230.10 541 767 7.9E-92 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Pfam PF13654 AAA domain 25 539 1.2E-184 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Gene3D G3DSA:3.40.50.300 235 449 1.1E-55 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Gene3D G3DSA:3.40.50.300 5 192 1.8E-28 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Gene3D G3DSA:1.10.8.60 450 536 1.3E-12 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 SUPERFAMILY SSF54211 564 756 2.24E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 649 751 1.2E-9 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 676 695 1.2E-6 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 706 724 1.2E-6 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 646 665 1.2E-6 T 11-10-2018 VV93_v1c41790 e303b81a146b2f088436ebc4ab3242e6 786 SUPERFAMILY SSF52540 30 538 2.79E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c07960 0ce473eeeac3bec26624c99b6b15dcef 129 Pfam PF07417 Transcriptional regulator Crl 6 123 1.3E-47 T 11-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 VV93_v1c07960 0ce473eeeac3bec26624c99b6b15dcef 129 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 4 129 30.928 T 11-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 VV93_v1c07960 0ce473eeeac3bec26624c99b6b15dcef 129 Gene3D G3DSA:3.30.310.230 2 128 6.9E-43 T 11-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 VV93_v1c03910 78991ed7f7ad767d243505449d475a81 97 Pfam PF10795 Protein of unknown function (DUF2607) 2 96 1.9E-37 T 11-10-2018 IPR019731 Protein of unknown function DUF2607 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 Gene3D G3DSA:3.40.50.2300 1 127 8.3E-33 T 11-10-2018 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 Pfam PF00072 Response regulator receiver domain 7 115 3.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 Gene3D G3DSA:2.40.50.40 154 220 2.6E-11 T 11-10-2018 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 SUPERFAMILY SSF52172 1 128 1.57E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 Pfam PF04397 LytTr DNA-binding domain 161 254 7.9E-28 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 SMART SM00448 4 116 1.4E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c30300 4255cdda9e85f0443bc67d112d432dbc 255 SMART SM00850 160 255 1.3E-29 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 1.2E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 1.5E-142 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 SUPERFAMILY SSF51569 7 335 3.66E-145 T 11-10-2018 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 Gene3D G3DSA:3.20.20.70 2 337 1.7E-148 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 SMART SM01004 9 333 1.9E-245 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c01720 f6f2d999c5b52835405ee4a486ccd14a 347 PIRSF PIRSF001415 2 336 1.3E-152 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 VV93_v1c12230 722cb886957a5a02c5d5bcc3fe9d9b4d 613 PIRSF PIRSF002741 3 572 1.7E-67 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c12230 722cb886957a5a02c5d5bcc3fe9d9b4d 613 SUPERFAMILY SSF53850 45 566 1.38E-95 T 11-10-2018 VV93_v1c12230 722cb886957a5a02c5d5bcc3fe9d9b4d 613 Gene3D G3DSA:3.40.190.10 25 328 2.6E-45 T 11-10-2018 VV93_v1c12230 722cb886957a5a02c5d5bcc3fe9d9b4d 613 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 491 1.0E-63 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c12230 722cb886957a5a02c5d5bcc3fe9d9b4d 613 Gene3D G3DSA:3.10.105.10 329 546 1.6E-42 T 11-10-2018 VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 SUPERFAMILY SSF56176 346 434 2.73E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 Pfam PF01595 Domain of unknown function DUF21 9 199 3.5E-41 T 11-10-2018 IPR002550 CNNM, transmembrane domain VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 SUPERFAMILY SSF54631 201 336 1.07E-17 T 11-10-2018 VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 Gene3D G3DSA:3.10.580.10 196 348 1.9E-28 T 11-10-2018 VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 Gene3D G3DSA:3.30.465.10 349 429 8.1E-29 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 Pfam PF03471 Transporter associated domain 349 427 2.1E-20 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c42500 10a87341f5e9f7ef606e2fd091bb35a6 437 SMART SM01091 348 428 3.1E-26 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Gene3D G3DSA:1.10.8.60 759 852 4.0E-10 T 11-10-2018 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Pfam PF07724 AAA domain (Cdc48 subfamily) 587 754 2.4E-39 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 843 0.0 T 11-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SMART SM00382 207 352 2.1E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SMART SM00382 587 747 4.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SMART SM01086 759 851 4.5E-6 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 303 315 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 759 832 5.6E-10 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SUPERFAMILY SSF81923 11 128 2.45E-15 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 665 683 2.7E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 591 609 2.7E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 636 654 2.7E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 698 712 2.7E-31 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Gene3D G3DSA:3.40.50.300 540 756 8.1E-66 T 11-10-2018 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Gene3D G3DSA:1.10.1780.10 1 159 6.0E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SUPERFAMILY SSF52540 536 843 7.09E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Gene3D G3DSA:3.40.50.300 353 534 4.0E-41 T 11-10-2018 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Gene3D G3DSA:3.40.50.300 160 351 1.6E-58 T 11-10-2018 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 212 325 3.7E-7 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c39240 e1810973e69e885462d2da6dc34ad76b 854 SUPERFAMILY SSF52540 168 490 2.86E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 Gene3D G3DSA:1.10.10.10 4 91 1.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 Pfam PF03466 LysR substrate binding domain 90 292 2.0E-34 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 Gene3D G3DSA:3.40.190.290 94 292 6.1E-52 T 11-10-2018 VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 SUPERFAMILY SSF46785 5 89 2.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44540 c66e77aec28e1d6e15fc30e91ae463f2 296 SUPERFAMILY SSF53850 91 294 8.93E-35 T 11-10-2018 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 SUPERFAMILY SSF46955 1 126 1.28E-32 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 SMART SM00422 1 70 6.4E-22 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 127 4.6E-58 T 11-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 Pfam PF00376 MerR family regulatory protein 2 39 1.0E-12 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 Gene3D G3DSA:1.10.1660.10 1 125 2.0E-31 T 11-10-2018 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 Pfam PF09278 MerR, DNA binding 46 107 2.9E-16 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 7.4E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 7.4E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c36230 95e9e827ef8fae3c5983c2dcb7553a8a 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 7.4E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 SUPERFAMILY SSF51735 106 289 1.36E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 1.4E-49 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 Gene3D G3DSA:3.40.50.720 104 305 1.6E-107 T 11-10-2018 VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 SUPERFAMILY SSF52283 1 124 4.04E-20 T 11-10-2018 VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 Gene3D G3DSA:3.40.50.720 2 313 1.6E-107 T 11-10-2018 VV93_v1c43670 21a17a15b0354449e6afbdb389c0d1de 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 25 320 1.3E-13 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VV93_v1c34530 4cf5332621212c5e42c455e685412a23 384 Pfam PF00155 Aminotransferase class I and II 31 375 4.9E-33 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c34530 4cf5332621212c5e42c455e685412a23 384 Gene3D G3DSA:3.90.1150.10 15 377 2.8E-112 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c34530 4cf5332621212c5e42c455e685412a23 384 SUPERFAMILY SSF53383 3 379 6.61E-89 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c34530 4cf5332621212c5e42c455e685412a23 384 Gene3D G3DSA:3.40.640.10 60 273 2.8E-112 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SUPERFAMILY SSF51445 315 785 3.08E-75 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SUPERFAMILY SSF54556 628 751 1.71E-13 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:3.20.20.80 756 783 5.1E-13 T 11-10-2018 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:2.60.40.10 97 189 6.3E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SMART SM00495 1012 1057 0.049 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SMART SM00495 37 83 7.0E-16 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:3.10.50.10 721 755 5.1E-13 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Pfam PF00704 Glycosyl hydrolases family 18 322 781 2.6E-85 T 11-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 ProSitePatterns PS01095 Chitinases family 18 active site. 470 478 - T 11-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:3.20.20.80 300 651 2.6E-81 T 11-10-2018 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:2.10.10.20 16 88 5.6E-15 T 11-10-2018 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SMART SM00636 321 781 5.1E-121 T 11-10-2018 IPR011583 Chitinase II GO:0008061 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Gene3D G3DSA:2.60.40.10 192 283 6.2E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 SUPERFAMILY SSF51055 22 87 1.1E-17 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c37160 0b58d5feee44bba85dc0bab5d5e42cc7 1060 Pfam PF06483 Chitinase C 809 974 3.3E-71 T 11-10-2018 IPR009470 Chitinase, C-terminal KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c05960 35f6e46c2274c71581ec6b778f1c0070 183 Pfam PF01814 Hemerythrin HHE cation binding domain 2 135 2.0E-13 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 VV93_v1c05960 35f6e46c2274c71581ec6b778f1c0070 183 Gene3D G3DSA:1.20.120.520 1 152 1.3E-18 T 11-10-2018 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 488 498 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 SUPERFAMILY SSF52743 123 548 1.78E-101 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 PRINTS PR00723 Subtilisin serine protease family (S8) signature 182 195 6.6E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 PRINTS PR00723 Subtilisin serine protease family (S8) signature 487 503 6.6E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 PRINTS PR00723 Subtilisin serine protease family (S8) signature 142 161 6.6E-16 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Gene3D G3DSA:2.60.120.260 561 674 2.2E-12 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Pfam PF00082 Subtilase family 470 538 5.6E-13 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Pfam PF00082 Subtilase family 146 345 1.2E-27 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 SUPERFAMILY SSF49785 563 674 2.34E-20 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Pfam PF05922 Peptidase inhibitor I9 43 120 4.1E-8 T 11-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Gene3D G3DSA:3.40.50.200 144 545 9.7E-157 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 186 196 - T 11-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Gene3D G3DSA:3.30.70.80 37 125 7.5E-6 T 11-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 SUPERFAMILY SSF54897 41 119 5.95E-6 T 11-10-2018 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Gene3D G3DSA:3.50.30.30 335 480 9.7E-157 T 11-10-2018 VV93_v1c32890 f8f165ba55ee9300f66715165bc63adf 674 Pfam PF01483 Proprotein convertase P-domain 595 673 3.7E-19 T 11-10-2018 IPR002884 P domain GO:0004252|GO:0006508 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 Gene3D G3DSA:3.50.7.10 192 372 1.3E-239 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 SUPERFAMILY SSF52029 185 376 4.49E-84 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 PRINTS PR00298 60kDa chaperonin signature 350 375 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 PRINTS PR00298 60kDa chaperonin signature 83 110 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 PRINTS PR00298 60kDa chaperonin signature 27 53 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 PRINTS PR00298 60kDa chaperonin signature 398 419 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 PRINTS PR00298 60kDa chaperonin signature 268 291 1.6E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 2.8E-254 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 5.4E-96 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.44 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 Gene3D G3DSA:1.10.560.10 8 521 1.3E-239 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 SUPERFAMILY SSF48592 3 230 1.02E-67 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 Gene3D G3DSA:3.30.260.10 136 410 1.3E-239 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c28290 cc9ff9b8a8d25c6c81d6ee3e8f4c3156 546 SUPERFAMILY SSF48592 373 525 2.44E-31 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 Gene3D G3DSA:3.30.750.24 175 293 7.3E-36 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 Pfam PF11563 Protoglobin 13 161 1.6E-30 T 11-10-2018 VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 Pfam PF01740 STAS domain 186 285 1.6E-10 T 11-10-2018 IPR002645 STAS domain VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 SUPERFAMILY SSF52091 177 289 7.26E-19 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 Gene3D G3DSA:1.10.490.10 11 165 1.8E-35 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 VV93_v1c35830 9408140c5b2f743800c92ce5993ff6bb 306 SUPERFAMILY SSF46458 12 156 1.26E-36 T 11-10-2018 IPR009050 Globin-like superfamily VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 Gene3D G3DSA:3.90.226.10 5 207 7.0E-85 T 11-10-2018 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 2.1E-107 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 Pfam PF00574 Clp protease 25 205 8.4E-90 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.494 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 SUPERFAMILY SSF52096 23 207 1.24E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 11-10-2018 IPR018215 ClpP, Ser active site VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.3E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.3E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.3E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.3E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.3E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 VV93_v1c10250 5f8a847fdabff315fe4f29bd1049e1b0 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 11-10-2018 IPR033135 ClpP, histidine active site VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 SUPERFAMILY SSF53067 85 391 5.94E-56 T 11-10-2018 VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 SUPERFAMILY SSF46785 11 75 5.96E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 Pfam PF00480 ROK family 86 390 1.4E-77 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 Gene3D G3DSA:3.30.420.40 90 384 6.2E-94 T 11-10-2018 VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 Gene3D G3DSA:1.10.10.10 3 79 3.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 Gene3D G3DSA:3.30.420.40 207 376 6.2E-94 T 11-10-2018 VV93_v1c09330 d92b6f067c5c660fee8a2ef8f3b52063 404 ProSitePatterns PS01125 ROK family signature. 217 244 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c42650 8cd67265dadf0c7c96c8a5abd810449f 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 43 421 6.2E-48 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c42650 8cd67265dadf0c7c96c8a5abd810449f 423 SUPERFAMILY SSF56935 51 423 3.3E-66 T 11-10-2018 VV93_v1c42650 8cd67265dadf0c7c96c8a5abd810449f 423 Gene3D G3DSA:2.40.160.60 51 423 7.4E-70 T 11-10-2018 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 Gene3D G3DSA:2.60.120.10 10 138 6.1E-43 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 5.7E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 5.7E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 8.8E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 SUPERFAMILY SSF51206 8 136 1.7E-34 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 SMART SM00100 2 122 5.9E-27 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 Gene3D G3DSA:1.10.10.10 139 207 1.0E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 SMART SM00419 160 208 4.2E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 7.4E-23 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c27780 63e5d9f408005892605e5653dccdd9b1 210 SUPERFAMILY SSF46785 139 207 3.95E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c17610 b24599b7bd3e54065d69c2abe7e5a2c3 195 Gene3D G3DSA:3.40.50.360 1 195 1.1E-55 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c17610 b24599b7bd3e54065d69c2abe7e5a2c3 195 Pfam PF02525 Flavodoxin-like fold 3 190 3.6E-44 T 11-10-2018 IPR003680 Flavodoxin-like fold VV93_v1c17610 b24599b7bd3e54065d69c2abe7e5a2c3 195 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 194 31.967 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 VV93_v1c17610 b24599b7bd3e54065d69c2abe7e5a2c3 195 SUPERFAMILY SSF52218 1 193 5.28E-52 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 205 220 5.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 220 236 5.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 SMART SM00342 154 236 3.3E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 SUPERFAMILY SSF51182 4 163 1.3E-9 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 Gene3D G3DSA:1.10.10.60 134 239 6.4E-23 T 11-10-2018 VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 Pfam PF12833 Helix-turn-helix domain 160 238 2.7E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c33900 b88db478d638ec84a1309db82cb4a6d3 240 SUPERFAMILY SSF46689 191 238 2.97E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 Gene3D G3DSA:3.30.230.10 291 533 2.4E-91 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 Gene3D G3DSA:3.40.50.300 98 196 2.6E-6 T 11-10-2018 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 SUPERFAMILY SSF54211 314 506 1.02E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 Pfam PF13654 AAA domain 106 288 2.7E-20 T 11-10-2018 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 400 506 2.8E-10 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 397 416 1.2E-10 T 11-10-2018 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 427 446 1.2E-10 T 11-10-2018 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 457 475 1.2E-10 T 11-10-2018 VV93_v1c15350 65ae3735bf00694c8408f1075e30abec 547 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 314 330 1.2E-10 T 11-10-2018 VV93_v1c39700 03c914aa4b0a33d042598d204b561f30 150 SUPERFAMILY SSF54427 19 149 2.68E-27 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c39700 03c914aa4b0a33d042598d204b561f30 150 Gene3D G3DSA:3.10.450.50 10 150 5.4E-32 T 11-10-2018 VV93_v1c39700 03c914aa4b0a33d042598d204b561f30 150 Pfam PF07366 SnoaL-like polyketide cyclase 24 146 9.4E-31 T 11-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 VV93_v1c12060 8f459fa201d66ddc8794beca45e8d583 392 SUPERFAMILY SSF52151 25 278 7.06E-36 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VV93_v1c12060 8f459fa201d66ddc8794beca45e8d583 392 Pfam PF01734 Patatin-like phospholipase 30 197 9.8E-21 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VV93_v1c12060 8f459fa201d66ddc8794beca45e8d583 392 Gene3D G3DSA:3.40.1090.10 15 142 2.1E-9 T 11-10-2018 VV93_v1c12060 8f459fa201d66ddc8794beca45e8d583 392 Gene3D G3DSA:3.40.1090.10 143 238 3.2E-7 T 11-10-2018 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.8E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.8E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.8E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 SMART SM00448 4 117 2.4E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 1.2E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 SUPERFAMILY SSF52172 5 133 4.27E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 SUPERFAMILY SSF46894 130 204 1.02E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 SMART SM00421 145 202 1.1E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 Pfam PF00072 Response regulator receiver domain 6 117 1.1E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41150 1905a1b67abcf4976f1de64941f1a0b4 210 Gene3D G3DSA:3.40.50.12740 4 206 6.9E-65 T 11-10-2018 VV93_v1c44890 ddf6a4e4ce972c542cc4fd9c763745de 541 Gene3D G3DSA:3.30.750.24 430 532 1.8E-9 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c44890 ddf6a4e4ce972c542cc4fd9c763745de 541 SUPERFAMILY SSF52091 436 509 1.94E-9 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c44890 ddf6a4e4ce972c542cc4fd9c763745de 541 Pfam PF00916 Sulfate permease family 27 395 9.2E-91 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 241 7.5E-45 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 309 1.3E-126 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 SUPERFAMILY SSF51735 1 308 1.18E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 Gene3D G3DSA:3.90.25.10 173 295 2.0E-115 T 11-10-2018 VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 313 46.174 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 VV93_v1c03130 35a602992beb789f23230ba4dce1ea96 313 Gene3D G3DSA:3.40.50.720 3 307 2.0E-115 T 11-10-2018 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 Gene3D G3DSA:3.40.50.2300 9 144 7.3E-37 T 11-10-2018 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 Pfam PF00072 Response regulator receiver domain 11 121 9.9E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 SUPERFAMILY SSF109604 147 349 1.6E-33 T 11-10-2018 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 SUPERFAMILY SSF52172 8 155 3.56E-37 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 SMART SM00448 9 121 1.7E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 Pfam PF13487 HD domain 233 303 2.3E-19 T 11-10-2018 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 Gene3D G3DSA:1.10.3210.10 148 364 2.6E-74 T 11-10-2018 VV93_v1c43730 f503e9174af8fd0abe0d757a255d1466 364 SMART SM00471 170 321 2.5E-9 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c19180 4c8150ab0ab15340c050a6b80b43268f 143 Gene3D G3DSA:3.40.1650.10 1 142 8.2E-48 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c19180 4c8150ab0ab15340c050a6b80b43268f 143 Pfam PF05025 RbsD / FucU transport protein family 3 141 3.0E-37 T 11-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c19180 4c8150ab0ab15340c050a6b80b43268f 143 SUPERFAMILY SSF102546 1 141 1.44E-42 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c01030 45cf2ddac14ef7f9222c65a9d651a0a3 322 PIRSF PIRSF003097 24 318 3.8E-59 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 73 9.0E-24 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 73 6.2E-38 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 Pfam PF01084 Ribosomal protein S18 19 68 2.8E-25 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 Gene3D G3DSA:4.10.640.10 20 75 7.8E-29 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.42 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.6E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.6E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.6E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.6E-18 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27110 172c44b6db02fe4c0a08641ec7d7996e 75 SUPERFAMILY SSF46911 3 74 2.49E-29 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c01760 f4908b713d5da6ea60ec05544118c472 212 Gene3D G3DSA:3.40.50.150 40 205 2.3E-11 T 11-10-2018 VV93_v1c01760 f4908b713d5da6ea60ec05544118c472 212 SUPERFAMILY SSF53335 47 198 1.37E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c01760 f4908b713d5da6ea60ec05544118c472 212 Pfam PF13489 Methyltransferase domain 61 192 5.4E-17 T 11-10-2018 VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 SUPERFAMILY SSF51735 4 235 1.1E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 Gene3D G3DSA:3.40.50.720 3 215 2.2E-46 T 11-10-2018 VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 9.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 9.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 9.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 Pfam PF00106 short chain dehydrogenase 3 182 6.3E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c12480 cb93c2b1a5385bfa149f131d3c6e4da8 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 128 156 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c40510 be9a397813aaeee1347b4793b286dd90 74 Pfam PF11137 Protein of unknown function (DUF2909) 6 67 3.6E-20 T 11-10-2018 IPR021313 Protein of unknown function DUF2909 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 Pfam PF11612 Type II secretion system (T2SS), protein J 67 204 2.9E-39 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 15 206 8.3E-82 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 Gene3D G3DSA:3.10.610.10 46 159 1.4E-35 T 11-10-2018 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 SUPERFAMILY SSF54523 48 211 3.22E-56 T 11-10-2018 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 37 4.3E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 Gene3D G3DSA:2.10.70.20 161 209 6.0E-15 T 11-10-2018 VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 37 3.0E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02020 bd6637d1419c2d268abd4757371edd3e 233 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c34980 b0a173b9b01f4d6598d947a27a5c2983 261 Gene3D G3DSA:3.40.50.880 65 261 1.6E-50 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c34980 b0a173b9b01f4d6598d947a27a5c2983 261 SUPERFAMILY SSF52317 72 258 3.44E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c34980 b0a173b9b01f4d6598d947a27a5c2983 261 Pfam PF01965 DJ-1/PfpI family 73 256 1.3E-43 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VV93_v1c34980 b0a173b9b01f4d6598d947a27a5c2983 261 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 74 258 2.3E-42 T 11-10-2018 IPR006286 Deglycase PfpI VV93_v1c01420 b0a173b9b01f4d6598d947a27a5c2983 261 Gene3D G3DSA:3.40.50.880 65 261 1.6E-50 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c01420 b0a173b9b01f4d6598d947a27a5c2983 261 SUPERFAMILY SSF52317 72 258 3.44E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c01420 b0a173b9b01f4d6598d947a27a5c2983 261 Pfam PF01965 DJ-1/PfpI family 73 256 1.3E-43 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VV93_v1c01420 b0a173b9b01f4d6598d947a27a5c2983 261 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 74 258 2.3E-42 T 11-10-2018 IPR006286 Deglycase PfpI VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 383 462 1.3E-26 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 SMART SM00173 209 380 0.0091 T 11-10-2018 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 SUPERFAMILY SSF52540 205 469 3.6E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Gene3D G3DSA:3.40.50.300 202 380 3.4E-50 T 11-10-2018 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 463 9.1E-180 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 155 1.4E-20 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 206 372 1.5E-25 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Gene3D G3DSA:3.40.50.300 2 160 1.3E-42 T 11-10-2018 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Pfam PF01926 50S ribosome-binding GTPase 210 327 1.3E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.1E-27 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 6.8E-11 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.8E-11 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 PIRSF PIRSF006485 1 471 1.2E-179 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Hamap MF_00195 GTPase Der [der]. 2 466 39.122 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 Gene3D G3DSA:3.30.300.20 383 465 3.6E-21 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 SMART SM00382 1 173 2.3 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 SMART SM00382 206 353 0.12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c07160 d2efb73172c7fa079eb3e313e91ef54e 496 SUPERFAMILY SSF52540 4 164 1.28E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 Gene3D G3DSA:1.10.760.10 39 186 2.3E-112 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 Gene3D G3DSA:1.10.760.10 37 310 2.3E-112 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 Pfam PF03150 Di-haem cytochrome c peroxidase 39 186 6.7E-48 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 Pfam PF00034 Cytochrome c 195 304 2.2E-11 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 SUPERFAMILY SSF46626 25 174 8.27E-47 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 PIRSF PIRSF000294 3 328 6.0E-122 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 VV93_v1c43440 16f61a319ffd216c3f9e7a6c81c7ac7d 328 SUPERFAMILY SSF46626 173 324 1.97E-41 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c38090 dbb1edfbfad41304f2d448b1697feecd 93 SUPERFAMILY SSF50249 1 86 4.28E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c38090 dbb1edfbfad41304f2d448b1697feecd 93 Gene3D G3DSA:2.40.50.140 1 88 1.2E-27 T 11-10-2018 VV93_v1c38090 dbb1edfbfad41304f2d448b1697feecd 93 Pfam PF02303 Helix-destabilising protein 2 84 5.4E-29 T 11-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 VV93_v1c38090 dbb1edfbfad41304f2d448b1697feecd 93 ProDom PD015272 DNA DNA-BINDING SINGLE-STRANDED PHAGE-RELATED HELIX-DESTABILIZING REPLICATION BINDING GPV 3D-STRUCTURE DIRECT 1 85 3.0E-29 T 11-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 VV93_v1c15420 dbb1edfbfad41304f2d448b1697feecd 93 SUPERFAMILY SSF50249 1 86 4.28E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c15420 dbb1edfbfad41304f2d448b1697feecd 93 Gene3D G3DSA:2.40.50.140 1 88 1.2E-27 T 11-10-2018 VV93_v1c15420 dbb1edfbfad41304f2d448b1697feecd 93 Pfam PF02303 Helix-destabilising protein 2 84 5.4E-29 T 11-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 VV93_v1c15420 dbb1edfbfad41304f2d448b1697feecd 93 ProDom PD015272 DNA DNA-BINDING SINGLE-STRANDED PHAGE-RELATED HELIX-DESTABILIZING REPLICATION BINDING GPV 3D-STRUCTURE DIRECT 1 85 3.0E-29 T 11-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 SMART SM00382 156 369 4.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 SUPERFAMILY SSF48295 355 458 3.4E-38 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 SMART SM00760 367 436 3.4E-45 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Gene3D G3DSA:3.30.300.180 1 105 2.2E-37 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Gene3D G3DSA:3.40.50.300 109 288 1.1E-49 T 11-10-2018 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Gene3D G3DSA:1.10.8.60 290 360 1.5E-24 T 11-10-2018 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 SUPERFAMILY SSF52540 124 335 5.35E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Gene3D G3DSA:1.10.1750.10 366 459 1.4E-39 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Pfam PF00308 Bacterial dnaA protein 125 341 9.7E-98 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 368 436 1.7E-32 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Pfam PF11638 DnaA N-terminal domain 2 56 3.0E-16 T 11-10-2018 IPR024633 DnaA N-terminal domain VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 255 282 1.2E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 189 203 1.2E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 417 436 1.2E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 221 235 1.2E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 157 177 1.2E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 2 457 5.2E-185 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 2 458 33.112 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VV93_v1c00010 8bd74a61d519ef35c5ace2c7e447df06 459 ProSitePatterns PS01008 DnaA protein signature. 417 436 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 Gene3D G3DSA:1.10.8.10 5 90 1.8E-26 T 11-10-2018 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 Gene3D G3DSA:3.40.50.150 91 282 4.9E-59 T 11-10-2018 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 7 282 45.001 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 Pfam PF13847 Methyltransferase domain 116 247 2.4E-16 T 11-10-2018 IPR025714 Methyltransferase domain VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 6 281 2.5E-81 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 29 278 7.2E-93 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c08630 b09446c7458d140222c53fe241b126d7 291 SUPERFAMILY SSF53335 9 279 9.39E-59 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 Gene3D G3DSA:3.40.430.10 1 162 3.2E-60 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 PIRSF PIRSF000194 1 161 2.9E-62 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 SUPERFAMILY SSF53597 1 160 2.57E-57 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 11-10-2018 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 11-10-2018 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 PRINTS PR00070 Dihydrofolate reductase signature 92 106 1.1E-14 T 11-10-2018 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 11-10-2018 VV93_v1c04420 f5ced6011ed5e23de331d717534e9847 162 Pfam PF00186 Dihydrofolate reductase 3 159 1.4E-60 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 VV93_v1c27650 4289703cf5f9c13d4235a459a17165ac 260 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 164 251 4.7E-30 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c27650 4289703cf5f9c13d4235a459a17165ac 260 SUPERFAMILY SSF54534 48 253 1.19E-64 T 11-10-2018 VV93_v1c27650 4289703cf5f9c13d4235a459a17165ac 260 Gene3D G3DSA:3.10.50.40 149 260 5.6E-43 T 11-10-2018 VV93_v1c27650 4289703cf5f9c13d4235a459a17165ac 260 Gene3D G3DSA:1.10.287.460 31 148 3.9E-32 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VV93_v1c27650 4289703cf5f9c13d4235a459a17165ac 260 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 37 157 1.2E-32 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VV93_v1c04580 e41dd8658e7ece2ded71ee640962ac2a 348 TIGRFAM TIGR00661 MJ1255: conserved hypothetical protein 2 310 6.1E-99 T 11-10-2018 IPR005262 Conserved hypothetical protein CHP00661 VV93_v1c04580 e41dd8658e7ece2ded71ee640962ac2a 348 Gene3D G3DSA:3.40.50.2000 172 315 1.4E-6 T 11-10-2018 VV93_v1c04580 e41dd8658e7ece2ded71ee640962ac2a 348 Pfam PF13528 Glycosyl transferase family 1 1 300 3.8E-44 T 11-10-2018 VV93_v1c04580 e41dd8658e7ece2ded71ee640962ac2a 348 SUPERFAMILY SSF53756 1 306 5.5E-13 T 11-10-2018 VV93_v1c27370 4bc42f11129d3d17d58130117abfe0a2 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 1.2E-59 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VV93_v1c27370 4bc42f11129d3d17d58130117abfe0a2 105 SUPERFAMILY SSF47598 3 103 4.0E-57 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VV93_v1c27370 4bc42f11129d3d17d58130117abfe0a2 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 5.0E-49 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VV93_v1c27370 4bc42f11129d3d17d58130117abfe0a2 105 Hamap MF_00744 Met repressor [metJ]. 1 105 35.305 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 VV93_v1c27370 4bc42f11129d3d17d58130117abfe0a2 105 Gene3D G3DSA:1.10.140.10 2 105 2.1E-56 T 11-10-2018 IPR023453 Methionine repressor MetJ domain superfamily VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 SUPERFAMILY SSF56349 116 302 3.53E-52 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 19 306 1.4E-107 T 11-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 15 304 55.442 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 Gene3D G3DSA:1.10.150.130 14 108 9.8E-19 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 Gene3D G3DSA:1.10.443.10 121 298 7.4E-57 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 SUPERFAMILY SSF47823 16 107 1.0E-12 T 11-10-2018 VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 100 4.3E-20 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VV93_v1c00790 de12f9a1073d657a24fb99f22e5c192b 316 Pfam PF00589 Phage integrase family 122 290 8.6E-50 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c13310 a473d27929276a4db2ae8e6328d6f475 92 Pfam PF01386 Ribosomal L25p family 4 89 2.0E-22 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VV93_v1c13310 a473d27929276a4db2ae8e6328d6f475 92 Gene3D G3DSA:2.40.240.10 1 92 8.5E-35 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c13310 a473d27929276a4db2ae8e6328d6f475 92 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 92 26.282 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 VV93_v1c13310 a473d27929276a4db2ae8e6328d6f475 92 SUPERFAMILY SSF50715 1 92 6.1E-28 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c13310 a473d27929276a4db2ae8e6328d6f475 92 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 92 6.0E-48 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 VV93_v1c25050 eb910445110636037dbecd6966fd374c 525 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 11 520 1.4E-206 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VV93_v1c25050 eb910445110636037dbecd6966fd374c 525 SUPERFAMILY SSF55931 10 518 1.31E-199 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 VV93_v1c25050 eb910445110636037dbecd6966fd374c 525 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 525 221.092 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VV93_v1c25050 eb910445110636037dbecd6966fd374c 525 Gene3D G3DSA:3.30.590.20 21 525 5.1E-192 T 11-10-2018 VV93_v1c25050 eb910445110636037dbecd6966fd374c 525 Pfam PF04262 Glutamate-cysteine ligase 18 382 3.0E-168 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 ProSitePatterns PS00194 Thioredoxin family active site. 62 80 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 Pfam PF00578 AhpC/TSA family 38 144 1.6E-13 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 Gene3D G3DSA:3.40.30.10 28 154 5.6E-24 T 11-10-2018 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 PRINTS PR00421 Thioredoxin family signature 69 78 2.0E-5 T 11-10-2018 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 PRINTS PR00421 Thioredoxin family signature 128 139 2.0E-5 T 11-10-2018 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 PRINTS PR00421 Thioredoxin family signature 61 69 2.0E-5 T 11-10-2018 VV93_v1c40660 40dcd8c3a2c3c714c12f2cdf20541d79 163 SUPERFAMILY SSF52833 6 152 1.02E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 SMART SM00861 354 525 1.1E-67 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 3.8E-48 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Gene3D G3DSA:3.40.50.920 538 664 1.0E-45 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 SUPERFAMILY SSF52518 6 319 3.59E-119 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Pfam PF02780 Transketolase, C-terminal domain 541 655 4.1E-21 T 11-10-2018 IPR033248 Transketolase, C-terminal domain VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Gene3D G3DSA:3.40.50.970 326 537 8.2E-86 T 11-10-2018 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 SUPERFAMILY SSF52922 533 664 2.36E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Gene3D G3DSA:3.40.50.970 2 325 5.4E-130 T 11-10-2018 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 SUPERFAMILY SSF52518 333 526 8.54E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 333 5.1E-166 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c25680 270a7f0bae514637d9bd50b7cf5fdbba 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 Gene3D G3DSA:1.10.10.10 165 247 3.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 Gene3D G3DSA:2.60.120.10 43 164 8.3E-49 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 SMART SM00100 30 151 2.4E-20 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 Pfam PF13545 Crp-like helix-turn-helix domain 168 241 2.1E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 SUPERFAMILY SSF46785 165 244 2.93E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 SUPERFAMILY SSF51206 23 162 2.36E-31 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 6.4E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.5E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.5E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c15690 18a9677a861c5351ed77f5a56f17bae6 248 SMART SM00419 187 235 4.3E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 338 7.2E-7 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 TIGRFAM TIGR01499 folC: bifunctional protein FolC 33 414 1.1E-104 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 Pfam PF08245 Mur ligase middle domain 54 192 1.2E-6 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 SUPERFAMILY SSF53244 287 415 6.56E-33 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 PIRSF PIRSF001563 6 421 1.0E-104 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 Gene3D G3DSA:3.40.1190.10 1 287 2.5E-89 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 SUPERFAMILY SSF53623 15 285 2.88E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c21260 bce8bf003a22164c97c42cd51150915f 421 Gene3D G3DSA:3.90.190.20 288 421 1.3E-35 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 484 4.4E-156 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 Pfam PF04963 Sigma-54 factor, core binding domain 126 315 8.7E-59 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 465 472 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 PIRSF PIRSF000774 1 487 7.3E-151 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 Gene3D G3DSA:1.10.10.60 427 484 3.7E-23 T 11-10-2018 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 PRINTS PR00045 Sigma-54 factor signature 386 398 3.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 PRINTS PR00045 Sigma-54 factor signature 198 215 3.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 PRINTS PR00045 Sigma-54 factor signature 402 413 3.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 PRINTS PR00045 Sigma-54 factor signature 460 478 3.3E-31 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 49 3.8E-17 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 Gene3D G3DSA:1.10.10.1330 128 246 1.4E-23 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 374 393 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 VV93_v1c04160 7808efc63f3ffda0ebbac245441eb2c8 487 Pfam PF04552 Sigma-54, DNA binding domain 327 485 3.2E-72 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding VV93_v1c11630 c705cf4a3ef05851dbf34f16600b3f8e 377 Gene3D G3DSA:1.10.620.20 2 341 1.4E-144 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 VV93_v1c11630 c705cf4a3ef05851dbf34f16600b3f8e 377 SUPERFAMILY SSF47240 3 341 2.08E-112 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c11630 c705cf4a3ef05851dbf34f16600b3f8e 377 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 11-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c11630 c705cf4a3ef05851dbf34f16600b3f8e 377 Pfam PF00268 Ribonucleotide reductase, small chain 34 333 1.4E-48 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 Gene3D G3DSA:3.40.50.2300 56 306 6.7E-80 T 11-10-2018 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 SUPERFAMILY SSF47413 1 59 2.44E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 Pfam PF13377 Periplasmic binding protein-like domain 168 328 1.6E-40 T 11-10-2018 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 Gene3D G3DSA:3.40.50.2300 160 289 6.7E-80 T 11-10-2018 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.1E-19 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 SMART SM00354 1 71 8.8E-33 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 SUPERFAMILY SSF53822 60 332 3.53E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c27410 22d8e0e040d6e3f97273b0fda12770a9 335 Gene3D G3DSA:1.10.260.40 1 55 3.5E-26 T 11-10-2018 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 Gene3D G3DSA:3.30.70.141 1 141 1.1E-59 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 SUPERFAMILY SSF54919 1 140 1.02E-60 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.783 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 SMART SM00562 3 140 4.5E-91 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 4.7E-38 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 4.7E-38 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 4.7E-38 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 4.7E-38 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 4.7E-38 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c07090 4513327b545e4f904be7458f522e3930 141 Pfam PF00334 Nucleoside diphosphate kinase 4 138 3.5E-58 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 VV93_v1c31310 a036437a613397446da874b57aee8622 340 SUPERFAMILY SSF47413 11 60 4.98E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c31310 a036437a613397446da874b57aee8622 340 Gene3D G3DSA:3.40.50.2300 70 314 1.9E-77 T 11-10-2018 VV93_v1c31310 a036437a613397446da874b57aee8622 340 SMART SM00354 10 80 1.4E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31310 a036437a613397446da874b57aee8622 340 SUPERFAMILY SSF53822 70 336 1.4E-78 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c31310 a036437a613397446da874b57aee8622 340 Gene3D G3DSA:3.40.50.2300 168 297 1.9E-77 T 11-10-2018 VV93_v1c31310 a036437a613397446da874b57aee8622 340 Pfam PF13377 Periplasmic binding protein-like domain 178 335 8.4E-38 T 11-10-2018 VV93_v1c31310 a036437a613397446da874b57aee8622 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 9.2E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31310 a036437a613397446da874b57aee8622 340 Gene3D G3DSA:1.10.260.40 1 66 3.8E-17 T 11-10-2018 VV93_v1c31310 a036437a613397446da874b57aee8622 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 11-10-2018 VV93_v1c03260 d2935b4d58ae8886b21f053b98c9627d 391 Gene3D G3DSA:3.40.50.2000 198 386 8.2E-13 T 11-10-2018 VV93_v1c03260 d2935b4d58ae8886b21f053b98c9627d 391 Pfam PF00534 Glycosyl transferases group 1 225 335 1.0E-6 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c03260 d2935b4d58ae8886b21f053b98c9627d 391 SUPERFAMILY SSF53756 73 334 4.33E-14 T 11-10-2018 VV93_v1c31270 d3c749f07ab99bdd087bdd435262a6f1 339 Gene3D G3DSA:1.10.3720.10 78 334 2.4E-64 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31270 d3c749f07ab99bdd087bdd435262a6f1 339 SUPERFAMILY SSF161098 82 323 6.54E-55 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31270 d3c749f07ab99bdd087bdd435262a6f1 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 320 2.8E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 SUPERFAMILY SSF53383 19 378 1.53E-91 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 Gene3D G3DSA:3.90.1150.10 277 379 2.5E-16 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 PIRSF PIRSF000390 15 379 8.5E-87 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 TIGRFAM TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family 20 376 1.2E-164 T 11-10-2018 IPR026385 Aminotransferase, LLPSF_NHT_00031 family VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 30 378 2.7E-81 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c03000 1668972778b49aad98faea32b32c4013 381 Gene3D G3DSA:3.40.640.10 4 275 4.3E-84 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 SUPERFAMILY SSF55021 338 435 3.88E-20 T 11-10-2018 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 PIRSF PIRSF000726 43 490 9.9E-130 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 Gene3D G3DSA:3.40.1160.10 47 331 1.4E-100 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 ProSitePatterns PS00324 Aspartokinase signature. 47 55 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 Gene3D G3DSA:3.30.70.260 421 490 3.5E-16 T 11-10-2018 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 45 489 6.2E-124 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 SUPERFAMILY SSF55021 418 489 6.87E-13 T 11-10-2018 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 SUPERFAMILY SSF53633 46 334 1.57E-76 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 Gene3D G3DSA:1.20.120.1320 83 176 1.4E-100 T 11-10-2018 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 Gene3D G3DSA:3.30.70.260 351 420 1.1E-28 T 11-10-2018 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 45 489 5.2E-124 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c26810 3cdaafe639c11988a2022c022a636747 490 Pfam PF00696 Amino acid kinase family 46 319 1.4E-47 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 SUPERFAMILY SSF46785 13 123 1.22E-45 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 PIRSF PIRSF018282 1 445 2.6E-254 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 SUPERFAMILY SSF140570 124 286 7.85E-76 T 11-10-2018 IPR036141 MukF, middle domain superfamily VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Pfam PF17193 MukF C-terminal domain 288 445 1.6E-77 T 11-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 6 445 56.36 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Pfam PF03882 MukF winged-helix domain 10 122 1.5E-54 T 11-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Pfam PF17192 MukF middle domain 126 286 6.6E-78 T 11-10-2018 IPR033440 Chromosome partition protein MukF, middle domain VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Gene3D G3DSA:1.10.225.40 358 445 4.9E-38 T 11-10-2018 IPR038198 MukF, C-terminal domain superfamily VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Gene3D G3DSA:1.10.10.10 29 123 3.4E-46 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20120 70cc7d28f2b5a96f91963b01fb0775ad 445 Gene3D G3DSA:1.20.58.590 124 316 1.3E-80 T 11-10-2018 IPR036141 MukF, middle domain superfamily VV93_v1c11570 9488790c0912f66bedda213bedf39842 414 Gene3D G3DSA:3.30.360.10 159 355 3.1E-143 T 11-10-2018 VV93_v1c11570 9488790c0912f66bedda213bedf39842 414 SUPERFAMILY SSF51735 3 178 1.36E-16 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c11570 9488790c0912f66bedda213bedf39842 414 Gene3D G3DSA:3.40.50.720 4 398 3.1E-143 T 11-10-2018 VV93_v1c11570 9488790c0912f66bedda213bedf39842 414 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 149 392 9.9E-30 T 11-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 VV93_v1c11570 9488790c0912f66bedda213bedf39842 414 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 3 144 2.0E-34 T 11-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 Gene3D G3DSA:3.40.190.10 172 271 8.9E-69 T 11-10-2018 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 Gene3D G3DSA:3.40.190.10 93 296 8.9E-69 T 11-10-2018 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 7.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 Gene3D G3DSA:1.10.10.10 3 90 7.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 SUPERFAMILY SSF46785 7 87 6.17E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 SUPERFAMILY SSF53850 92 298 1.7E-39 T 11-10-2018 VV93_v1c00150 aaac658b2652fd2a2400cc8d0726bf6f 313 Pfam PF03466 LysR substrate binding domain 99 299 2.1E-22 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32950 cc3c338176e13adf32049fc27ce52c6a 269 Pfam PF03781 Sulfatase-modifying factor enzyme 1 25 266 3.1E-43 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VV93_v1c32950 cc3c338176e13adf32049fc27ce52c6a 269 Gene3D G3DSA:3.90.1580.10 11 269 2.8E-46 T 11-10-2018 VV93_v1c32950 cc3c338176e13adf32049fc27ce52c6a 269 SUPERFAMILY SSF56436 24 267 2.14E-53 T 11-10-2018 IPR016187 C-type lectin fold VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 Gene3D G3DSA:3.90.220.20 1 203 9.0E-42 T 11-10-2018 VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 Gene3D G3DSA:3.90.220.20 204 399 6.6E-32 T 11-10-2018 VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 SUPERFAMILY SSF116734 4 205 8.34E-40 T 11-10-2018 VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 Pfam PF01420 Type I restriction modification DNA specificity domain 31 177 2.7E-13 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 Pfam PF01420 Type I restriction modification DNA specificity domain 206 376 5.6E-13 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 VV93_v1c29960 8bc13bc0a2aefcaaef7f53d6d533ff13 399 SUPERFAMILY SSF116734 206 399 1.5E-27 T 11-10-2018 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 Gene3D G3DSA:3.60.120.10 7 521 5.2E-186 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 SUPERFAMILY SSF56322 14 516 7.33E-158 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 22 518 1.1E-227 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 Pfam PF00425 chorismate binding enzyme 246 506 2.1E-84 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 PIRSF PIRSF001373 3 521 3.1E-260 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 PRINTS PR00095 Anthranilate synthase component I signature 448 462 6.1E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 PRINTS PR00095 Anthranilate synthase component I signature 368 381 6.1E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 PRINTS PR00095 Anthranilate synthase component I signature 354 367 6.1E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 PRINTS PR00095 Anthranilate synthase component I signature 463 477 6.1E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11390 456abf2c967c2d57219560ec07990b81 521 Pfam PF04715 Anthranilate synthase component I, N terminal region 25 198 1.5E-12 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.2E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 12 246 4.7E-101 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 SUPERFAMILY SSF51735 9 247 8.2E-88 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.4E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.4E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.4E-17 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 Gene3D G3DSA:3.40.50.720 1 248 1.6E-91 T 11-10-2018 VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 245 3.3E-68 T 11-10-2018 VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 219 6.2E-6 T 11-10-2018 VV93_v1c11920 1c63044d74d46ac9635bcc83a4858e5c 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 204 219 3.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 219 235 3.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 Pfam PF12833 Helix-turn-helix domain 158 236 1.7E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 SUPERFAMILY SSF46689 136 186 3.36E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 SMART SM00342 152 235 7.0E-33 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 SUPERFAMILY SSF46689 188 235 3.85E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 SUPERFAMILY SSF51182 16 156 1.68E-9 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 Gene3D G3DSA:2.60.120.10 5 71 2.3E-7 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 Gene3D G3DSA:1.10.10.60 130 185 2.1E-11 T 11-10-2018 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 Gene3D G3DSA:1.10.10.60 186 237 5.0E-18 T 11-10-2018 VV93_v1c44250 a05f6c7c1a6f5dbb196f5f683ddc432a 237 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 189 231 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 Gene3D G3DSA:3.10.310.30 325 456 1.9E-30 T 11-10-2018 VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 Pfam PF02272 DHHA1 domain 319 451 1.2E-26 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 SUPERFAMILY SSF64182 45 462 7.46E-119 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 Pfam PF01368 DHH family 71 202 7.7E-9 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 21 575 4.7E-156 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 VV93_v1c06060 77cbbdf079598fa5d14b138a57b6156a 579 Gene3D G3DSA:3.90.1640.30 44 323 3.8E-88 T 11-10-2018 VV93_v1c22910 49b8c31f6e312422fe82829270ab887b 222 Pfam PF04391 Protein of unknown function (DUF533) 43 221 3.7E-61 T 11-10-2018 IPR007486 Inner membrane protein YebE VV93_v1c22910 49b8c31f6e312422fe82829270ab887b 222 Gene3D G3DSA:1.10.3680.10 95 222 1.8E-11 T 11-10-2018 IPR029024 TerB-like VV93_v1c22910 49b8c31f6e312422fe82829270ab887b 222 SUPERFAMILY SSF158682 81 221 1.44E-27 T 11-10-2018 IPR029024 TerB-like VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Pfam PF08264 Anticodon-binding domain of tRNA 674 826 6.2E-40 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 SUPERFAMILY SSF52374 1 641 2.82E-135 T 11-10-2018 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Gene3D G3DSA:3.90.740.10 197 357 1.7E-48 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 949 16.071 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 5.2E-226 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 932 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Gene3D G3DSA:1.10.287.380 877 949 1.5E-19 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 SUPERFAMILY SSF47323 642 898 2.06E-67 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 SUPERFAMILY SSF50677 191 365 2.09E-58 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Gene3D G3DSA:1.10.730.10 578 818 2.3E-71 T 11-10-2018 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 SUPERFAMILY SSF46589 884 948 6.8E-19 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Gene3D G3DSA:3.40.50.620 358 577 1.5E-57 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Gene3D G3DSA:3.40.50.620 2 196 2.6E-56 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 884 944 3.4E-19 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 8.4E-34 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 8.4E-34 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 8.4E-34 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 8.4E-34 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c26340 3c6b7b453642ea3f3c4ca51104302029 951 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 8.4E-34 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 ProSitePatterns PS01318 TsaA-like domain signature. 85 96 - T 11-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 Gene3D G3DSA:2.40.30.70 22 145 6.8E-46 T 11-10-2018 IPR036414 YaeB, N-terminal domain superfamily VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 Gene3D G3DSA:3.30.2310.10 146 227 1.8E-17 T 11-10-2018 VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 Pfam PF01980 Uncharacterised protein family UPF0066 19 141 4.1E-39 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 145 1.9E-46 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain VV93_v1c22890 af51a414e0c1bcbe50dca873db9aa368 231 SUPERFAMILY SSF118196 2 225 8.37E-78 T 11-10-2018 IPR036413 YaeB-like superfamily VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 Gene3D G3DSA:3.10.105.10 269 516 2.6E-194 T 11-10-2018 VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 PIRSF PIRSF002741 2 539 9.2E-69 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 Gene3D G3DSA:3.90.76.10 63 169 2.6E-194 T 11-10-2018 VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 SUPERFAMILY SSF53850 37 541 9.77E-106 T 11-10-2018 VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 452 4.9E-76 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 Gene3D G3DSA:3.40.190.10 44 540 2.6E-194 T 11-10-2018 VV93_v1c24470 817a06280ed2e8c121c84f7e9ea7e217 557 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 81 103 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 555 563 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 SUPERFAMILY SSF54292 501 603 3.01E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Gene3D G3DSA:3.10.20.30 507 605 1.8E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Pfam PF03473 MOSC domain 139 262 3.1E-28 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 SUPERFAMILY SSF63380 279 381 6.35E-27 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 SUPERFAMILY SSF50800 4 264 4.13E-16 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Gene3D G3DSA:3.40.50.80 380 506 1.9E-29 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Pfam PF00970 Oxidoreductase FAD-binding domain 283 378 7.7E-15 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 SUPERFAMILY SSF141673 6 133 4.45E-30 T 11-10-2018 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00406 Cytochrome B5 reductase signature 425 436 1.5E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00406 Cytochrome B5 reductase signature 478 486 1.5E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00406 Cytochrome B5 reductase signature 328 335 1.5E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00406 Cytochrome B5 reductase signature 365 379 1.5E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00406 Cytochrome B5 reductase signature 388 407 1.5E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Gene3D G3DSA:2.40.30.10 278 378 3.7E-26 T 11-10-2018 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 SUPERFAMILY SSF52343 368 508 1.31E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 388 407 4.8E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 478 486 4.8E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 328 335 4.8E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 309 319 4.8E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 425 436 4.8E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 528 597 1.4E-13 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Pfam PF00175 Oxidoreductase NAD-binding domain 389 492 8.4E-16 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c33950 27f6a92d4a2df1a356c755476bd9027e 606 Pfam PF03476 MOSC N-terminal beta barrel domain 4 117 9.2E-31 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 SMART SM00271 220 285 5.1E-20 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 Pfam PF00226 DnaJ domain 221 283 5.1E-13 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 PRINTS PR00625 DnaJ domain signature 265 285 6.0E-11 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 PRINTS PR00625 DnaJ domain signature 223 241 6.0E-11 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 PRINTS PR00625 DnaJ domain signature 241 256 6.0E-11 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 SUPERFAMILY SSF46565 138 283 4.81E-32 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 Gene3D G3DSA:1.10.3680.10 40 192 1.5E-26 T 11-10-2018 IPR029024 TerB-like VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 Gene3D G3DSA:1.10.287.110 195 285 8.4E-17 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 SUPERFAMILY SSF158682 48 181 1.75E-23 T 11-10-2018 IPR029024 TerB-like VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 Pfam PF05099 Tellurite resistance protein TerB 46 177 3.5E-18 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal VV93_v1c04490 3cf7bfe01bcad443e9f603a1b0d63ac3 287 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 286 40.25 T 11-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 VV93_v1c06360 c8ca207ddd87fec2409d66efc376ac70 387 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 22 386 42.694 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VV93_v1c06360 c8ca207ddd87fec2409d66efc376ac70 387 Gene3D G3DSA:3.30.420.40 29 381 9.3E-137 T 11-10-2018 VV93_v1c06360 c8ca207ddd87fec2409d66efc376ac70 387 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 23 386 7.5E-168 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 VV93_v1c06360 c8ca207ddd87fec2409d66efc376ac70 387 Gene3D G3DSA:3.30.420.40 163 346 9.3E-137 T 11-10-2018 VV93_v1c06360 c8ca207ddd87fec2409d66efc376ac70 387 SUPERFAMILY SSF53067 23 361 3.42E-29 T 11-10-2018 VV93_v1c08900 150eded8e54afda423ab501251076559 235 Pfam PF13861 FlgD Tudor-like domain 93 229 3.9E-15 T 11-10-2018 IPR025963 FlgD Tudor-like domain VV93_v1c08900 150eded8e54afda423ab501251076559 235 Gene3D G3DSA:2.30.30.910 98 222 1.4E-35 T 11-10-2018 VV93_v1c08900 150eded8e54afda423ab501251076559 235 Gene3D G3DSA:2.60.40.4070 110 196 1.4E-35 T 11-10-2018 VV93_v1c08900 150eded8e54afda423ab501251076559 235 Pfam PF03963 Flagellar hook capping protein - N-terminal region 22 85 2.7E-22 T 11-10-2018 IPR005648 Flagellar hook capping protein VV93_v1c08900 150eded8e54afda423ab501251076559 235 Pfam PF13860 FlgD Ig-like domain 117 184 5.1E-19 T 11-10-2018 IPR025965 FlgD Ig-like domain VV93_v1c10530 05ba4973a5852da77193a543135af638 153 Gene3D G3DSA:1.10.10.10 3 54 1.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c10530 05ba4973a5852da77193a543135af638 153 SMART SM00344 2 111 1.6E-46 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.6E-21 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c10530 05ba4973a5852da77193a543135af638 153 SUPERFAMILY SSF46785 2 91 1.17E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c10530 05ba4973a5852da77193a543135af638 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 2.2E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 2.2E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 2.2E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 Gene3D G3DSA:3.30.70.920 55 139 2.2E-22 T 11-10-2018 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 SUPERFAMILY SSF54909 62 151 2.15E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c10530 05ba4973a5852da77193a543135af638 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 2.8E-18 T 11-10-2018 VV93_v1c10530 05ba4973a5852da77193a543135af638 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VV93_v1c30080 7e86773070c4488000347add6c4bad2f 46 Pfam PF00468 Ribosomal protein L34 3 45 5.3E-24 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c30080 7e86773070c4488000347add6c4bad2f 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 4 41 4.0E-14 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c30080 7e86773070c4488000347add6c4bad2f 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 3 46 16.38 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c30080 7e86773070c4488000347add6c4bad2f 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 45 5.6E-26 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c30080 7e86773070c4488000347add6c4bad2f 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 4 23 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c23630 6d6368afab40f3fa7da588060eafe343 478 PIRSF PIRSF006060 1 475 7.9E-40 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c23630 6d6368afab40f3fa7da588060eafe343 478 Gene3D G3DSA:1.20.1740.10 14 475 2.1E-7 T 11-10-2018 VV93_v1c23630 6d6368afab40f3fa7da588060eafe343 478 Pfam PF13520 Amino acid permease 11 442 4.1E-29 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c19810 1017a2f4bb81a05ce2ee276e397b9783 346 SUPERFAMILY SSF51735 121 240 3.64E-11 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c19810 1017a2f4bb81a05ce2ee276e397b9783 346 Gene3D G3DSA:3.40.50.720 112 233 1.3E-11 T 11-10-2018 VV93_v1c19810 1017a2f4bb81a05ce2ee276e397b9783 346 Pfam PF07885 Ion channel 26 103 6.2E-14 T 11-10-2018 IPR013099 Potassium channel domain VV93_v1c19810 1017a2f4bb81a05ce2ee276e397b9783 346 Gene3D G3DSA:1.10.287.70 19 104 5.5E-14 T 11-10-2018 VV93_v1c19810 1017a2f4bb81a05ce2ee276e397b9783 346 SUPERFAMILY SSF81324 3 132 1.07E-19 T 11-10-2018 VV93_v1c28150 2cf305867285cdb7377b188293ef677d 375 SUPERFAMILY SSF51261 148 373 4.76E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c28150 2cf305867285cdb7377b188293ef677d 375 Gene3D G3DSA:2.70.70.10 236 374 2.1E-34 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c28150 2cf305867285cdb7377b188293ef677d 375 Pfam PF01551 Peptidase family M23 276 369 3.0E-24 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c07850 e25d1e0ca2bf433ee1caf5920ba44efd 181 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 61 98 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VV93_v1c07850 e25d1e0ca2bf433ee1caf5920ba44efd 181 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 16 157 44.469 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VV93_v1c07850 e25d1e0ca2bf433ee1caf5920ba44efd 181 Gene3D G3DSA:3.40.140.10 6 171 4.7E-63 T 11-10-2018 VV93_v1c07850 e25d1e0ca2bf433ee1caf5920ba44efd 181 SUPERFAMILY SSF53927 9 161 3.35E-55 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c07850 e25d1e0ca2bf433ee1caf5920ba44efd 181 Pfam PF14437 MafB19-like deaminase 12 157 4.3E-31 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 VV93_v1c25570 87dd121aa39854fef29f4bf69711399f 199 Gene3D G3DSA:3.40.50.10420 2 197 2.2E-56 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VV93_v1c25570 87dd121aa39854fef29f4bf69711399f 199 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 6 189 1.6E-43 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VV93_v1c25570 87dd121aa39854fef29f4bf69711399f 199 PIRSF PIRSF006806 3 192 1.4E-34 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VV93_v1c25570 87dd121aa39854fef29f4bf69711399f 199 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 6 189 2.3E-52 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase VV93_v1c25570 87dd121aa39854fef29f4bf69711399f 199 SUPERFAMILY SSF100950 5 197 2.51E-58 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 262 1.1E-113 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 258 2.2E-107 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.058 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 PIRSF PIRSF000388 1 264 2.5E-100 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 Gene3D G3DSA:3.20.20.60 1 263 1.5E-104 T 11-10-2018 VV93_v1c24750 c5ba7ea63f83d27aa50d7c8507693898 264 SUPERFAMILY SSF51621 3 262 1.02E-104 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c38710 a461439bc309b907eb7a31cf1a900a0a 944 Gene3D G3DSA:2.40.160.50 629 943 1.4E-9 T 11-10-2018 VV93_v1c38710 a461439bc309b907eb7a31cf1a900a0a 944 Gene3D G3DSA:2.120.10.30 381 602 2.4E-20 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VV93_v1c38710 a461439bc309b907eb7a31cf1a900a0a 944 SUPERFAMILY SSF82171 352 557 2.75E-21 T 11-10-2018 VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 SUPERFAMILY SSF47616 95 219 9.14E-21 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 83 7.6E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 6 220 5.4E-79 T 11-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 Gene3D G3DSA:3.40.30.10 7 83 1.6E-24 T 11-10-2018 VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 SUPERFAMILY SSF52833 4 89 6.73E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c14070 d37e11248ac72b4176e0cbb97b9a961e 222 Gene3D G3DSA:1.20.1050.10 89 222 9.3E-42 T 11-10-2018 VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 Gene3D G3DSA:1.10.287.130 170 287 1.5E-16 T 11-10-2018 VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 SUPERFAMILY SSF55874 297 406 1.7E-10 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 SUPERFAMILY SSF47384 209 290 1.47E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 288 1.9E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 SMART SM00388 226 295 4.8E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c19410 ef6f3858b1e2444af9cf45c119158a8c 423 Gene3D G3DSA:3.30.565.10 288 414 2.3E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 503 520 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 SUPERFAMILY SSF53706 42 660 7.59E-169 T 11-10-2018 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 TIGRFAM TIGR02164 torA: trimethylamine-N-oxide reductase TorA 1 819 0.0 T 11-10-2018 IPR011887 Trimethylamine-N-oxide reductase TorA GO:0030151|GO:0042597|GO:0050626 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Gene3D G3DSA:3.40.50.740 87 569 1.6E-241 T 11-10-2018 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Pfam PF00384 Molybdopterin oxidoreductase 87 561 2.2E-80 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 28 2.1E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 SUPERFAMILY SSF50692 669 817 5.42E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Gene3D G3DSA:3.90.55.10 82 615 1.6E-241 T 11-10-2018 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Pfam PF01568 Molydopterin dinucleotide binding domain 676 796 1.3E-23 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Gene3D G3DSA:3.40.228.10 179 641 1.6E-241 T 11-10-2018 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 716 743 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 VV93_v1c12880 a7a1e328a174f12b507a78f18b5e3059 820 Gene3D G3DSA:2.40.40.20 649 813 5.8E-47 T 11-10-2018 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 Pfam PF00005 ABC transporter 20 161 1.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 SMART SM00382 28 211 8.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 SUPERFAMILY SSF50331 236 361 2.92E-31 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 Gene3D G3DSA:2.40.50.100 239 361 1.3E-49 T 11-10-2018 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 SUPERFAMILY SSF52540 4 243 3.51E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 Pfam PF08402 TOBE domain 281 353 9.6E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 Gene3D G3DSA:3.40.50.300 1 238 5.8E-75 T 11-10-2018 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c33830 e805b93fcbbb52c1c7f191b6222c3610 371 Gene3D G3DSA:2.40.50.140 287 344 1.3E-49 T 11-10-2018 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Gene3D G3DSA:1.10.287.950 290 622 5.1E-70 T 11-10-2018 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 SUPERFAMILY SSF58104 313 620 9.42E-75 T 11-10-2018 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Gene3D G3DSA:3.30.450.20 49 265 1.6E-78 T 11-10-2018 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 421 588 7.2E-45 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 SUPERFAMILY SSF103190 87 183 3.92E-19 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 SMART SM00283 360 621 1.1E-74 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Pfam PF00672 HAMP domain 291 342 9.0E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Pfam PF02743 Cache domain 34 254 8.8E-32 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 SMART SM00304 291 345 5.7E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 SMART SM00304 373 440 41.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34190 04524140740d298935bc668fa34b94cc 622 Gene3D G3DSA:3.30.450.20 62 172 1.6E-78 T 11-10-2018 VV93_v1c45610 8cb9858ed0aa9a8e0d8795ef454abff6 99 SMART SM00530 13 69 0.002 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c45610 8cb9858ed0aa9a8e0d8795ef454abff6 99 Gene3D G3DSA:1.10.260.40 2 94 4.2E-27 T 11-10-2018 VV93_v1c45610 8cb9858ed0aa9a8e0d8795ef454abff6 99 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 4 83 1.2E-23 T 11-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 VV93_v1c45610 8cb9858ed0aa9a8e0d8795ef454abff6 99 Pfam PF01381 Helix-turn-helix 17 67 2.0E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c45610 8cb9858ed0aa9a8e0d8795ef454abff6 99 SUPERFAMILY SSF47413 9 83 6.22E-19 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 Pfam PF08220 DeoR-like helix-turn-helix domain 9 62 1.0E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 4.1E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 4.1E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 Gene3D G3DSA:1.10.10.10 1 56 6.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 Gene3D G3DSA:3.40.50.1360 73 223 3.8E-5 T 11-10-2018 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 SUPERFAMILY SSF100950 76 233 1.74E-31 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 SMART SM00420 9 61 2.4E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 Pfam PF00455 DeoR C terminal sensor domain 77 232 5.3E-43 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 SMART SM01134 73 234 1.4E-55 T 11-10-2018 VV93_v1c04670 bb44f7ab6c4061e28b15b5fd5faf95f7 253 SUPERFAMILY SSF46785 9 68 6.92E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Gene3D G3DSA:1.10.287.470 91 150 7.6E-72 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Gene3D G3DSA:2.40.420.20 271 351 7.6E-72 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Pfam PF13437 HlyD family secretion protein 155 253 5.3E-8 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Gene3D G3DSA:2.40.50.100 57 189 7.6E-72 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Pfam PF13533 Biotin-lipoyl like 61 104 2.2E-13 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 SUPERFAMILY SSF111369 50 264 6.67E-29 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 Gene3D G3DSA:2.40.30.170 44 269 7.6E-72 T 11-10-2018 VV93_v1c13070 50821762ade311dbcb5e59367a032954 361 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 353 7.2E-70 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 Gene3D G3DSA:1.10.3720.10 10 267 2.2E-51 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 Gene3D G3DSA:1.10.3720.10 284 540 1.2E-33 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 SUPERFAMILY SSF161098 9 258 7.98E-44 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 253 5.7E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 342 537 3.8E-6 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24580 a4b3a6f79011e29fb0eeb229189ae63b 541 SUPERFAMILY SSF161098 281 535 3.01E-38 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c42260 fecad501d2ef74fb771bdef31feaf661 80 SUPERFAMILY SSF47336 10 75 1.27E-12 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c42260 fecad501d2ef74fb771bdef31feaf661 80 Gene3D G3DSA:1.10.1200.10 3 77 1.1E-21 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c42260 fecad501d2ef74fb771bdef31feaf661 80 Pfam PF00550 Phosphopantetheine attachment site 10 68 1.5E-13 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c42260 fecad501d2ef74fb771bdef31feaf661 80 ProSitePatterns PS00012 Phosphopantetheine attachment site. 33 48 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 SMART SM00327 308 481 1.8E-9 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 Gene3D G3DSA:3.40.50.410 309 479 6.0E-30 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 Pfam PF13768 von Willebrand factor type A domain 312 460 3.5E-17 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 Pfam PF08487 Vault protein inter-alpha-trypsin domain 48 158 2.8E-27 T 11-10-2018 IPR013694 VIT domain VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 SMART SM00609 32 160 1.6E-6 T 11-10-2018 IPR013694 VIT domain VV93_v1c41900 986a30c1694411839a015d4f2ce1980f 688 SUPERFAMILY SSF53300 307 476 1.22E-29 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c20460 24ef267f83873dd3c490ac623638ccbb 225 SUPERFAMILY SSF161098 11 203 9.29E-42 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c20460 24ef267f83873dd3c490ac623638ccbb 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 112 9.7E-24 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c20460 24ef267f83873dd3c490ac623638ccbb 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.6E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c20460 24ef267f83873dd3c490ac623638ccbb 225 Gene3D G3DSA:1.10.3720.10 1 218 2.7E-50 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 Gene3D G3DSA:3.40.50.720 1 252 5.7E-72 T 11-10-2018 VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 250 1.3E-57 T 11-10-2018 VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.2E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.2E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 2.2E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 SUPERFAMILY SSF51735 6 250 3.47E-69 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 0.0014 T 11-10-2018 VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c39790 9c4c80540d123cba93906929ac9dd950 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c37520 1b6467b96b179292078946ace200096d 544 Gene3D G3DSA:3.20.20.80 5 458 4.5E-200 T 11-10-2018 VV93_v1c37520 1b6467b96b179292078946ace200096d 544 Gene3D G3DSA:3.90.400.10 105 175 4.5E-200 T 11-10-2018 VV93_v1c37520 1b6467b96b179292078946ace200096d 544 SUPERFAMILY SSF51445 4 463 2.43E-158 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c37520 1b6467b96b179292078946ace200096d 544 Pfam PF00128 Alpha amylase, catalytic domain 28 363 1.0E-122 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c37520 1b6467b96b179292078946ace200096d 544 Pfam PF16657 Maltogenic Amylase, C-terminal domain 466 539 7.8E-12 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal VV93_v1c37520 1b6467b96b179292078946ace200096d 544 Gene3D G3DSA:2.60.40.1180 467 544 1.2E-18 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c37520 1b6467b96b179292078946ace200096d 544 SMART SM00642 13 405 1.5E-155 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c37520 1b6467b96b179292078946ace200096d 544 SUPERFAMILY SSF51011 466 543 7.65E-20 T 11-10-2018 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 1.0E-62 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 SUPERFAMILY SSF55021 79 162 6.47E-27 T 11-10-2018 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 Pfam PF10369 Small subunit of acetolactate synthase 84 158 1.9E-25 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 Gene3D G3DSA:3.30.70.260 1 78 8.1E-33 T 11-10-2018 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 Pfam PF01842 ACT domain 3 68 1.8E-16 T 11-10-2018 IPR002912 ACT domain VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 Gene3D G3DSA:3.30.70.1150 80 157 4.6E-28 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 SUPERFAMILY SSF55021 2 75 9.41E-23 T 11-10-2018 VV93_v1c04620 72f69bb411a8c2f428c4932f93542669 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 75 8.0E-38 T 11-10-2018 VV93_v1c00670 cfad2a70c58588c6640cbf54f9d0a0cd 175 Pfam PF00210 Ferritin-like domain 8 143 7.3E-39 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VV93_v1c00670 cfad2a70c58588c6640cbf54f9d0a0cd 175 Gene3D G3DSA:1.20.1260.10 1 175 1.0E-52 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c00670 cfad2a70c58588c6640cbf54f9d0a0cd 175 SUPERFAMILY SSF47240 1 160 3.57E-58 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 SUPERFAMILY SSF46565 1 73 7.59E-18 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 4.2E-42 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 Gene3D G3DSA:1.10.287.110 1 79 2.1E-23 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 SMART SM00271 1 66 3.4E-10 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 Pfam PF00226 DnaJ domain 2 70 7.5E-8 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.73 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 87 163 7.0E-21 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 SUPERFAMILY SSF47144 78 170 1.83E-25 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c07040 f07c6a2a9bebfed1b73af51054762704 171 Gene3D G3DSA:1.20.1280.20 80 171 2.2E-28 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c37580 30dc05989459f954a678c8ec378e762b 179 SUPERFAMILY SSF55729 3 170 4.33E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c37580 30dc05989459f954a678c8ec378e762b 179 Pfam PF13302 Acetyltransferase (GNAT) domain 9 148 1.7E-22 T 11-10-2018 IPR000182 GNAT domain VV93_v1c37580 30dc05989459f954a678c8ec378e762b 179 Gene3D G3DSA:3.40.630.30 2 179 8.9E-35 T 11-10-2018 VV93_v1c36380 5b0ebdcfbdd71fcdb8246afbb45117fe 185 SUPERFAMILY SSF48695 13 182 5.11E-30 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c36380 5b0ebdcfbdd71fcdb8246afbb45117fe 185 Gene3D G3DSA:1.10.3820.10 13 185 2.5E-31 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VV93_v1c36380 5b0ebdcfbdd71fcdb8246afbb45117fe 185 PIRSF PIRSF000013 1 185 8.1E-71 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 VV93_v1c36380 5b0ebdcfbdd71fcdb8246afbb45117fe 185 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 9 182 1.1E-56 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 Gene3D G3DSA:2.40.50.1020 164 242 1.0E-8 T 11-10-2018 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 Pfam PF04397 LytTr DNA-binding domain 146 238 5.2E-21 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 SMART SM00448 2 112 2.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 SMART SM00850 145 239 6.2E-24 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 Pfam PF00072 Response regulator receiver domain 5 112 3.8E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 Gene3D G3DSA:3.40.50.2300 1 128 2.3E-30 T 11-10-2018 VV93_v1c06310 24061acac679f9e1705c49acab94ba3d 242 SUPERFAMILY SSF52172 1 121 2.56E-30 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 286 300 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 133 148 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 209 222 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 82 95 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 119 132 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 108 116 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 195 208 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 399 412 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 PRINTS PR00415 Aconitase family signature 343 354 9.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 464 2.2E-265 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 Gene3D G3DSA:3.30.499.10 328 466 1.1E-48 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 Gene3D G3DSA:3.30.499.20 4 286 9.9E-99 T 11-10-2018 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 60.772 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 Pfam PF00330 Aconitase family (aconitate hydratase) 7 457 3.2E-160 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 SUPERFAMILY SSF53732 1 465 1.05E-163 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VV93_v1c04530 8004d5928b665af6c3128ecd1539604a 466 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Pfam PF09382 RQC domain 409 517 8.6E-37 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SMART SM00956 414 517 3.0E-50 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SUPERFAMILY SSF47819 534 608 5.23E-26 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Gene3D G3DSA:1.10.10.10 409 519 1.1E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Pfam PF00270 DEAD/DEAH box helicase 32 190 7.1E-18 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SMART SM00341 533 611 2.9E-22 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 17 606 2.6E-252 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 466 9.2E-190 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Gene3D G3DSA:1.10.150.80 526 609 4.7E-28 T 11-10-2018 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SMART SM00490 253 334 9.1E-29 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SUPERFAMILY SSF52540 17 203 1.47E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Gene3D G3DSA:3.40.50.300 7 211 9.9E-82 T 11-10-2018 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Pfam PF00570 HRDC domain 537 603 1.3E-22 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SMART SM00487 25 221 8.7E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 SUPERFAMILY SSF52540 211 458 3.78E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Pfam PF16124 RecQ zinc-binding 346 407 8.7E-18 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Gene3D G3DSA:3.40.50.300 213 408 8.5E-60 T 11-10-2018 VV93_v1c29080 e3d29a941ddfb0cd7530b93fc64c2fb7 611 Pfam PF00271 Helicase conserved C-terminal domain 229 333 7.6E-20 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 Gene3D G3DSA:3.30.700.10 18 144 3.1E-20 T 11-10-2018 VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 38 122 4.4E-17 T 11-10-2018 IPR031982 Type IV minor pilin ComP VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 15 35 5.1E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 SUPERFAMILY SSF54523 17 119 1.83E-17 T 11-10-2018 VV93_v1c07750 8840f9545bfb4db880eefc3e3288c29d 144 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 37 1.8E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c39990 029af785c26352acc838189f39b9475e 194 SUPERFAMILY SSF48498 80 192 1.64E-19 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c39990 029af785c26352acc838189f39b9475e 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.3E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c39990 029af785c26352acc838189f39b9475e 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.3E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c39990 029af785c26352acc838189f39b9475e 194 Gene3D G3DSA:1.10.357.10 1 193 9.1E-62 T 11-10-2018 VV93_v1c39990 029af785c26352acc838189f39b9475e 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 54 1.2E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c39990 029af785c26352acc838189f39b9475e 194 SUPERFAMILY SSF46689 2 75 1.18E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 Pfam PF13500 AAA domain 4 211 5.1E-40 T 11-10-2018 VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 SUPERFAMILY SSF52540 2 213 6.2E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 Gene3D G3DSA:3.40.50.300 2 224 6.6E-71 T 11-10-2018 VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 212 30.083 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 PIRSF PIRSF006755 1 227 2.6E-79 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VV93_v1c12440 acc3f8d27323bf4cbc1d02771273b2df 227 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 5.9E-54 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 SUPERFAMILY SSF53850 90 277 5.07E-14 T 11-10-2018 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 Gene3D G3DSA:1.10.10.10 1 84 9.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 Pfam PF03466 LysR substrate binding domain 92 276 1.5E-8 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 7.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c30410 382588cfcc508ca7001262e8cc243877 299 SUPERFAMILY SSF46785 1 82 5.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 Gene3D G3DSA:1.25.40.10 20 94 5.6E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 Gene3D G3DSA:1.25.40.10 95 246 2.9E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 SMART SM00028 131 164 0.39 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 SMART SM00028 28 61 1.5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 SMART SM00028 97 130 19.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c17650 67b22e688bac2ece0f5de0063553df24 246 SUPERFAMILY SSF48452 27 193 9.48E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c07810 28169ae35e328476939535b92fec1e23 281 SUPERFAMILY SSF53474 3 279 4.39E-91 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c07810 28169ae35e328476939535b92fec1e23 281 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 1.0E-118 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 VV93_v1c07810 28169ae35e328476939535b92fec1e23 281 Gene3D G3DSA:3.40.50.1820 4 281 1.6E-96 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c07810 28169ae35e328476939535b92fec1e23 281 Pfam PF00756 Putative esterase 23 273 8.6E-61 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 SUPERFAMILY SSF47413 1 58 9.21E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 11-10-2018 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 SUPERFAMILY SSF53822 61 313 4.32E-40 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 246 2.7E-14 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 SMART SM00354 1 73 8.2E-25 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 1.6E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 Gene3D G3DSA:3.40.50.2300 62 154 2.2E-19 T 11-10-2018 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 Gene3D G3DSA:1.10.260.40 1 61 1.7E-25 T 11-10-2018 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 Gene3D G3DSA:3.40.50.2300 155 326 6.9E-26 T 11-10-2018 VV93_v1c37040 8d3846ce8e7c3152c7f03d830ff6db4f 326 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 325 6.6E-140 T 11-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 Gene3D G3DSA:1.10.10.60 3 45 1.6E-6 T 11-10-2018 VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 Pfam PF00665 Integrase core domain 172 279 3.8E-12 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 Gene3D G3DSA:3.30.420.10 168 321 2.0E-12 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 266 282 - T 11-10-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 Pfam PF13936 Helix-turn-helix domain 2 45 7.3E-16 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain VV93_v1c16310 ba277a8da65b23f67fb6f3b18ed9a1fc 322 SUPERFAMILY SSF53098 175 319 1.77E-27 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c29890 8eb7798be4bdb595ccdc19960e6b7467 69 Gene3D G3DSA:1.10.260.40 1 65 9.8E-14 T 11-10-2018 VV93_v1c29890 8eb7798be4bdb595ccdc19960e6b7467 69 Pfam PF01381 Helix-turn-helix 2 30 5.5E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c29890 8eb7798be4bdb595ccdc19960e6b7467 69 SUPERFAMILY SSF47413 2 35 6.22E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 Pfam PF00009 Elongation factor Tu GTP binding domain 26 219 1.4E-45 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 18 474 54.023 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 82 97 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 27 433 8.1E-201 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 Gene3D G3DSA:3.40.50.300 5 239 3.0E-73 T 11-10-2018 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 Gene3D G3DSA:2.40.30.10 241 327 9.9E-27 T 11-10-2018 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 SUPERFAMILY SSF50465 332 433 6.23E-31 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 33 216 8.9E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 SUPERFAMILY SSF52540 19 234 2.59E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 PRINTS PR00315 GTP-binding elongation factor signature 125 136 6.8E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 PRINTS PR00315 GTP-binding elongation factor signature 162 171 6.8E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 PRINTS PR00315 GTP-binding elongation factor signature 109 119 6.8E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 PRINTS PR00315 GTP-binding elongation factor signature 89 97 6.8E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 PRINTS PR00315 GTP-binding elongation factor signature 28 41 6.8E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 Gene3D G3DSA:2.40.30.10 331 434 1.7E-30 T 11-10-2018 VV93_v1c03820 e90a1035c0bcdf29bb8f7e90ca768850 476 SUPERFAMILY SSF50447 242 327 8.17E-24 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 Pfam PF02634 FdhD/NarQ family 35 266 3.8E-73 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 Gene3D G3DSA:3.40.140.10 122 274 9.4E-42 T 11-10-2018 VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 11 267 25.437 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 PIRSF PIRSF015626 1 271 1.5E-96 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 Gene3D G3DSA:3.10.20.10 36 118 5.5E-10 T 11-10-2018 VV93_v1c15980 2e1651cc1c24bb780517bec86285210a 275 SUPERFAMILY SSF53927 15 266 4.51E-70 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Pfam PF16193 AAA C-terminal domain 190 268 1.8E-21 T 11-10-2018 IPR032423 AAA C-terminal domain VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 SUPERFAMILY SSF48019 253 435 2.3E-73 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 SMART SM00382 50 166 1.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Gene3D G3DSA:3.40.50.300 3 165 1.4E-48 T 11-10-2018 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Gene3D G3DSA:1.10.8.60 166 241 2.0E-23 T 11-10-2018 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Gene3D G3DSA:1.20.272.10 242 346 1.9E-43 T 11-10-2018 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 159 7.9E-17 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 SUPERFAMILY SSF52540 11 236 1.09E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Gene3D G3DSA:1.10.3710.10 347 448 3.1E-38 T 11-10-2018 VV93_v1c12380 7d48d1fa24496b6bb66a519e0b7b9388 449 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 435 1.4E-67 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal VV93_v1c43870 cf37ee620b630e4940747d52e297e9f6 335 Pfam PF13515 Fusaric acid resistance protein-like 181 310 2.3E-7 T 11-10-2018 VV93_v1c43870 cf37ee620b630e4940747d52e297e9f6 335 Pfam PF11168 Protein of unknown function (DUF2955) 3 141 1.0E-47 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c43870 cf37ee620b630e4940747d52e297e9f6 335 PIRSF PIRSF029594 1 329 1.5E-92 T 11-10-2018 IPR016926 Uncharacterised conserved protein UCP029594 VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 SUPERFAMILY SSF52540 8 242 1.77E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 PIRSF PIRSF039085 5 248 1.4E-111 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 Pfam PF00005 ABC transporter 24 172 4.4E-39 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 SMART SM00382 33 220 1.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c14590 e16869c3aa71e533b6b68e45d00fb382 249 Gene3D G3DSA:3.40.50.300 6 249 1.5E-80 T 11-10-2018 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 276 1.8E-114 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 SUPERFAMILY SSF46785 12 74 9.23E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Pfam PF07840 FadR C-terminal domain 72 274 2.1E-67 T 11-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Gene3D G3DSA:1.20.120.530 153 278 5.4E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Gene3D G3DSA:1.20.120.530 80 149 1.5E-6 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 3.1E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 SMART SM00345 12 71 1.6E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Gene3D G3DSA:1.10.10.10 1 79 1.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 3.5E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 3.5E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 SUPERFAMILY SSF48008 79 270 7.59E-57 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c18850 af2411921abed4f7cdbe9012d5624d91 279 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 279 138.194 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 SMART SM00479 18 204 3.0E-30 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 209 8.1E-100 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 Pfam PF00929 Exonuclease 20 195 4.4E-45 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 SUPERFAMILY SSF53098 10 208 1.17E-56 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 Gene3D G3DSA:3.30.420.10 9 216 2.0E-54 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c11020 568a6abad0681678c68ccef730e32c3d 217 Hamap MF_00157 Ribonuclease T [rnt]. 1 217 115.696 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 VV93_v1c37900 86b06493c54cbca957d79101514a0045 116 SUPERFAMILY SSF47413 18 63 8.28E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c37900 86b06493c54cbca957d79101514a0045 116 Pfam PF12472 Phage related protein 63 104 3.6E-13 T 11-10-2018 IPR021096 Vibrio phage VSK, Orf152 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 6.4E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 6.4E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 6.4E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 Pfam PF13411 MerR HTH family regulatory protein 4 69 1.2E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 SUPERFAMILY SSF46955 4 125 3.66E-28 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 3 142 6.1E-64 T 11-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 Gene3D G3DSA:1.10.1660.10 2 126 5.7E-31 T 11-10-2018 VV93_v1c43300 e0b2e145c9cedab29f3b688ddb1b9c26 155 SMART SM00422 3 71 2.0E-25 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 7.8E-206 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 SUPERFAMILY SSF55681 97 464 1.99E-94 T 11-10-2018 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 2.7E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 2.7E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 2.7E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 2.7E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 Gene3D G3DSA:3.30.930.10 109 465 3.3E-108 T 11-10-2018 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 Gene3D G3DSA:2.40.50.140 3 105 3.3E-19 T 11-10-2018 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 2.5E-10 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 2.0E-80 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 SUPERFAMILY SSF50249 15 101 6.0E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c18540 0d06911f6c69f483e9111e1a34bdba69 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 45.781 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 152 5.7E-37 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 168 8.1E-85 T 11-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 SUPERFAMILY SSF53218 7 168 5.63E-47 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 SMART SM00852 14 158 2.9E-27 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 Pfam PF00994 Probable molybdopterin binding domain 14 156 3.4E-34 T 11-10-2018 IPR001453 MoaB/Mog domain VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 Gene3D G3DSA:3.40.980.10 2 170 9.6E-52 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily VV93_v1c11180 2b95b7701ef8f0433b5bf236c318b65d 170 PIRSF PIRSF006443 1 166 3.0E-66 T 11-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Pfam PF00072 Response regulator receiver domain 6 115 5.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 SMART SM00448 4 115 5.7E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Gene3D G3DSA:1.10.10.60 382 469 2.2E-25 T 11-10-2018 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Gene3D G3DSA:1.10.8.60 314 381 9.5E-17 T 11-10-2018 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 SMART SM00382 163 306 1.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 SUPERFAMILY SSF52540 142 386 4.19E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Pfam PF02954 Bacterial regulatory protein, Fis family 428 468 6.3E-16 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 451 469 2.4E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 434 451 2.4E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 SUPERFAMILY SSF52172 2 188 4.41E-44 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Gene3D G3DSA:3.40.50.300 128 313 1.1E-67 T 11-10-2018 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Gene3D G3DSA:3.40.50.2300 1 124 2.8E-40 T 11-10-2018 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 SUPERFAMILY SSF46689 383 468 9.68E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 468 1.8E-239 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 Pfam PF00158 Sigma-54 interaction domain 143 309 2.7E-71 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 229 244 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c01810 1c91ce3b4bb257bbc4531e227cec425f 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VV93_v1c32640 6fabc7a5744cafa301e7152e9b33ca8b 399 Pfam PF07690 Major Facilitator Superfamily 11 294 5.6E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c32640 6fabc7a5744cafa301e7152e9b33ca8b 399 Gene3D G3DSA:1.20.1250.20 209 396 4.1E-19 T 11-10-2018 VV93_v1c32640 6fabc7a5744cafa301e7152e9b33ca8b 399 SUPERFAMILY SSF103473 5 386 8.76E-43 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c32640 6fabc7a5744cafa301e7152e9b33ca8b 399 Gene3D G3DSA:1.20.1250.20 1 190 1.1E-13 T 11-10-2018 VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 167 326 2.9E-27 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 SUPERFAMILY SSF55073 172 330 1.88E-34 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 Pfam PF00563 EAL domain 344 578 3.4E-68 T 11-10-2018 IPR001633 EAL domain VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 SUPERFAMILY SSF141868 343 590 1.31E-86 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 SMART SM00267 154 328 1.6E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 SMART SM00052 338 583 1.1E-103 T 11-10-2018 IPR001633 EAL domain VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 Gene3D G3DSA:3.30.70.270 162 341 2.0E-39 T 11-10-2018 VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 Pfam PF00990 Diguanylate cyclase, GGDEF domain 168 323 5.4E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40680 4b2be95c81ac943a6b60f3a519e064a6 591 Gene3D G3DSA:3.20.20.450 342 590 5.4E-94 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 Gene3D G3DSA:3.40.50.300 1 251 2.2E-68 T 11-10-2018 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 ProSitePatterns PS00211 ABC transporters family signature. 433 447 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 Pfam PF00005 ABC transporter 20 170 1.5E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 SUPERFAMILY SSF52540 297 526 5.65E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 SMART SM00382 29 221 5.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 SMART SM00382 324 510 5.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 Pfam PF00005 ABC transporter 315 461 1.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 Gene3D G3DSA:3.40.50.300 296 572 5.5E-65 T 11-10-2018 VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 SUPERFAMILY SSF52540 2 235 2.03E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33330 48d0ce069e3fa54aa64524cd79c71bc1 574 Pfam PF12558 ATP-binding cassette cobalt transporter 235 306 2.5E-20 T 11-10-2018 IPR022216 Putative ABC cobalt transporter VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 3.4E-98 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 SUPERFAMILY SSF51366 1 266 4.43E-92 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 Gene3D G3DSA:3.20.20.70 1 268 1.3E-96 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.113 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11340 7c878e438188e3fabe97e7d99e510964 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 3.4E-104 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Gene3D G3DSA:3.40.50.970 168 534 8.3E-149 T 11-10-2018 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 PIRSF PIRSF000157 1 935 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Gene3D G3DSA:3.40.50.12470 557 803 1.5E-172 T 11-10-2018 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Pfam PF02779 Transketolase, pyrimidine binding domain 593 788 9.5E-66 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Gene3D G3DSA:3.40.50.11610 724 930 1.5E-172 T 11-10-2018 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 SMART SM00861 594 787 4.7E-64 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 51 1.0E-13 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 933 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 SUPERFAMILY SSF52518 577 794 5.89E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Gene3D G3DSA:1.10.287.1150 85 167 2.6E-30 T 11-10-2018 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 933 1.0E-53 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 Pfam PF00676 Dehydrogenase E1 component 222 517 1.5E-49 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 VV93_v1c09550 86494e32fe4194e608de937f85478945 941 SUPERFAMILY SSF52518 122 545 6.48E-89 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 2.8E-19 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 Gene3D G3DSA:1.10.3390.10 1 75 3.0E-31 T 11-10-2018 IPR023202 YejL-like superfamily VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.597 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 6.0E-33 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 SUPERFAMILY SSF158651 1 75 3.27E-29 T 11-10-2018 IPR023202 YejL-like superfamily VV93_v1c10860 fb9f915034363a777c588139fffd836a 75 PIRSF PIRSF006188 1 72 1.2E-34 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Gene3D G3DSA:3.30.450.20 54 169 8.9E-10 T 11-10-2018 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 SUPERFAMILY SSF55785 321 433 1.13E-12 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 625 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 660 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 639 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 SUPERFAMILY SSF47384 451 528 6.08E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Gene3D G3DSA:1.10.287.130 441 527 1.3E-12 T 11-10-2018 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 SUPERFAMILY SSF55874 533 678 3.93E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Gene3D G3DSA:3.30.565.10 533 683 2.7E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 305 431 1.3E-10 T 11-10-2018 IPR000014 PAS domain VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 SMART SM00086 384 424 0.0025 T 11-10-2018 IPR001610 PAC motif VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Gene3D G3DSA:3.30.450.20 311 440 1.2E-12 T 11-10-2018 VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 572 680 4.6E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 Pfam PF13426 PAS domain 319 422 3.8E-6 T 11-10-2018 IPR000014 PAS domain VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 SMART SM00387 572 682 5.1E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43790 3928d3670ab2e19f4f4d6086e780abdf 686 PIRSF PIRSF036431 1 686 1.5E-143 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 3.3E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 3.3E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 3.3E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 SUPERFAMILY SSF54999 5 101 7.06E-37 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 Gene3D G3DSA:3.30.70.600 1 103 2.2E-38 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 SMART SM01403 7 101 6.6E-56 T 11-10-2018 IPR027486 Ribosomal protein S10 domain VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.8E-35 T 11-10-2018 IPR027486 Ribosomal protein S10 domain VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.839 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03450 b67c847ad62a5c40d2c05037ccb34615 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-45 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c09380 7653aea4e36a77de0c2c92bf7ef98ec5 165 SUPERFAMILY SSF54637 10 156 4.48E-24 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c09380 7653aea4e36a77de0c2c92bf7ef98ec5 165 Pfam PF14539 Domain of unknown function (DUF4442) 15 151 1.6E-24 T 11-10-2018 IPR027961 Protein of unknown function DUF4442 VV93_v1c09380 7653aea4e36a77de0c2c92bf7ef98ec5 165 Gene3D G3DSA:3.10.129.10 15 157 2.8E-26 T 11-10-2018 VV93_v1c21600 b68fba2e8c3c6483c7f0fbf63aa4b230 164 SUPERFAMILY SSF50341 14 158 4.97E-42 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c21600 b68fba2e8c3c6483c7f0fbf63aa4b230 164 SMART SM00260 16 153 9.2E-50 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21600 b68fba2e8c3c6483c7f0fbf63aa4b230 164 Pfam PF01584 CheW-like domain 20 156 2.5E-40 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c21600 b68fba2e8c3c6483c7f0fbf63aa4b230 164 Gene3D G3DSA:2.30.30.40 22 147 4.9E-43 T 11-10-2018 VV93_v1c21600 b68fba2e8c3c6483c7f0fbf63aa4b230 164 Gene3D G3DSA:2.40.50.180 39 148 4.9E-43 T 11-10-2018 VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 SMART SM00382 47 240 3.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 Pfam PF00005 ABC transporter 39 190 9.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 Gene3D G3DSA:3.40.50.300 7 331 7.1E-98 T 11-10-2018 VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 SUPERFAMILY SSF52540 10 262 4.46E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 309 2.5E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c11260 79566787fb9a7a75f766020c0f655049 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 327 3.7E-26 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c40580 c5ad9df3572fcb3473adb84f6f604106 210 Pfam PF01810 LysE type translocator 16 205 9.3E-27 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c40580 c5ad9df3572fcb3473adb84f6f604106 210 PIRSF PIRSF006324 1 209 1.3E-55 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Gene3D G3DSA:3.30.870.10 500 686 5.6E-73 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 1.1E-30 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Pfam PF02503 Polyphosphate kinase middle domain 119 319 6.0E-46 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 27.413 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Gene3D G3DSA:3.30.870.10 320 499 2.1E-72 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 SUPERFAMILY SSF143724 107 313 5.1E-63 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 4.1E-264 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 SUPERFAMILY SSF56024 315 494 1.1E-55 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 SUPERFAMILY SSF140356 4 105 3.53E-32 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 7.0E-146 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Gene3D G3DSA:3.30.1840.10 110 307 6.0E-75 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 Gene3D G3DSA:1.20.58.310 9 109 6.3E-36 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 SUPERFAMILY SSF56024 500 683 8.75E-68 T 11-10-2018 VV93_v1c06740 8af8e65c59ef567d50ae38082592a603 700 PIRSF PIRSF015589 1 694 6.4E-253 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 VV93_v1c06660 a6be3262656f772d4e46e35e2723ecb7 276 SUPERFAMILY SSF55166 23 273 7.22E-93 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c06660 a6be3262656f772d4e46e35e2723ecb7 276 PIRSF PIRSF018455 1 276 3.7E-112 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 VV93_v1c06660 a6be3262656f772d4e46e35e2723ecb7 276 Pfam PF03411 Penicillin-insensitive murein endopeptidase 38 271 1.3E-90 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 VV93_v1c06660 a6be3262656f772d4e46e35e2723ecb7 276 Gene3D G3DSA:3.30.1380.10 22 275 8.3E-93 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c08450 035291730ce00cf67372066ae16a89bb 105 SUPERFAMILY SSF81301 5 105 3.43E-38 T 11-10-2018 VV93_v1c08450 035291730ce00cf67372066ae16a89bb 105 Pfam PF02410 Ribosomal silencing factor during starvation 11 104 9.5E-28 T 11-10-2018 VV93_v1c08450 035291730ce00cf67372066ae16a89bb 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 2 105 25.159 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VV93_v1c08450 035291730ce00cf67372066ae16a89bb 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.3E-38 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VV93_v1c08450 035291730ce00cf67372066ae16a89bb 105 Gene3D G3DSA:3.30.460.10 2 105 3.3E-37 T 11-10-2018 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 SUPERFAMILY SSF50249 4 69 3.43E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-10-2018 IPR019844 Cold-shock conserved site VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 PRINTS PR00050 Cold shock protein signature 7 22 3.4E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 PRINTS PR00050 Cold shock protein signature 43 61 3.4E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 PRINTS PR00050 Cold shock protein signature 28 37 3.4E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 PIRSF PIRSF002599 1 70 8.2E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 SMART SM00357 6 70 1.1E-31 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 5.3E-31 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c14130 cbeb1481c0ae67e3930690f0f2c54657 70 Gene3D G3DSA:2.40.50.140 2 70 1.4E-30 T 11-10-2018 VV93_v1c27510 da3a5e5438127dd779ec1b58327ddc29 140 Pfam PF05656 Protein of unknown function (DUF805) 8 138 3.4E-21 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 413 1.8E-23 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 7.8E-145 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 1.1E-52 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 SUPERFAMILY SSF69075 315 416 7.45E-28 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 2.3E-50 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VV93_v1c08610 c716f963504768350ae940e5363e163f 419 PIRSF PIRSF000445 1 419 9.1E-158 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Gene3D G3DSA:3.40.50.720 159 311 7.9E-45 T 11-10-2018 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 30.855 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 Gene3D G3DSA:3.30.460.30 1 156 2.3E-58 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 SUPERFAMILY SSF69742 1 156 1.96E-48 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 VV93_v1c08610 c716f963504768350ae940e5363e163f 419 SUPERFAMILY SSF51735 160 313 1.1E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c35940 f008839b103d788661ea25b6622ad21f 146 Gene3D G3DSA:1.20.120.1220 1 134 7.3E-8 T 11-10-2018 VV93_v1c35940 f008839b103d788661ea25b6622ad21f 146 Pfam PF01478 Type IV leader peptidase family 8 104 3.1E-7 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 450 461 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 Pfam PF12838 4Fe-4S dicluster domain 184 230 1.1E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 Pfam PF00037 4Fe-4S binding domain 445 465 9.3E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 Gene3D G3DSA:3.30.70.20 157 254 1.8E-12 T 11-10-2018 VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 419 430 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 Gene3D G3DSA:3.30.70.20 414 480 3.8E-11 T 11-10-2018 VV93_v1c15950 330e91af1d70d4fd0dc645273ee83ff7 552 SUPERFAMILY SSF54862 149 510 2.39E-36 T 11-10-2018 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 Gene3D G3DSA:3.40.50.1400 8 318 3.0E-90 T 11-10-2018 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 Gene3D G3DSA:3.40.50.1400 163 301 3.0E-90 T 11-10-2018 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 SUPERFAMILY SSF53800 5 318 5.89E-99 T 11-10-2018 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 Hamap MF_00323 Ferrochelatase [hemH]. 5 319 35.789 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 Pfam PF00762 Ferrochelatase 6 318 3.0E-107 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 TIGRFAM TIGR00109 hemH: ferrochelatase 4 318 4.2E-101 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VV93_v1c09270 72d4207ab3712b3bb87ad0a7dfa4512f 319 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 380 463 1.2E-16 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 4 478 3.3E-227 T 11-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 SUPERFAMILY SSF55604 404 476 1.11E-19 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 Gene3D G3DSA:3.30.1360.60 401 479 1.6E-26 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 417 434 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 Pfam PF02378 Phosphotransferase system, EIIC 14 322 3.5E-80 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c43320 983edcac91590021940429c01b9377d9 480 Pfam PF00367 phosphotransferase system, EIIB 407 439 3.8E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c16400 e3ceed6a74c987894acb0ed09598eeaa 173 Pfam PF13527 Acetyltransferase (GNAT) domain 14 125 8.6E-9 T 11-10-2018 VV93_v1c16400 e3ceed6a74c987894acb0ed09598eeaa 173 Gene3D G3DSA:3.40.630.30 1 161 8.4E-21 T 11-10-2018 VV93_v1c16400 e3ceed6a74c987894acb0ed09598eeaa 173 SUPERFAMILY SSF55729 10 132 2.19E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c03160 4dedbae560972f5ea4ba7dafc73ff552 243 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 27 235 4.2E-61 T 11-10-2018 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB VV93_v1c03160 4dedbae560972f5ea4ba7dafc73ff552 243 Gene3D G3DSA:2.40.360.10 31 242 1.7E-61 T 11-10-2018 IPR023373 YmcC-like superfamily VV93_v1c03160 4dedbae560972f5ea4ba7dafc73ff552 243 SUPERFAMILY SSF159270 32 239 4.18E-56 T 11-10-2018 IPR023373 YmcC-like superfamily VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.2E-46 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 Pfam PF02082 Transcriptional regulator 1 83 1.3E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 Gene3D G3DSA:1.10.10.10 1 144 5.3E-54 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 2.2E-65 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 168 53.435 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 VV93_v1c07000 31f9da8b405120ef39cadbdb44eabe21 168 SUPERFAMILY SSF46785 2 133 1.25E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 PRINTS PR00160 Glutaredoxin signature 52 65 5.2E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 PRINTS PR00160 Glutaredoxin signature 3 21 5.2E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 PRINTS PR00160 Glutaredoxin signature 66 79 5.2E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 SUPERFAMILY SSF52833 3 81 3.94E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 5.3E-47 T 11-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 Pfam PF00462 Glutaredoxin 3 69 3.6E-16 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VV93_v1c13510 4bcc7ccefffcc162671a7ebd234332b7 87 Gene3D G3DSA:3.40.30.10 1 84 1.3E-25 T 11-10-2018 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Gene3D G3DSA:3.90.1150.10 425 594 8.0E-70 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 SUPERFAMILY SSF55904 568 708 1.44E-42 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Gene3D G3DSA:3.90.100.10 595 711 4.6E-45 T 11-10-2018 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Gene3D G3DSA:3.40.50.2300 1 129 4.2E-53 T 11-10-2018 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 1.6E-44 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Gene3D G3DSA:3.40.640.10 130 424 1.7E-91 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 2.1E-29 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 PIRSF PIRSF009393 1 711 1.2E-287 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 SUPERFAMILY SSF53383 130 562 7.24E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c20890 26cb5e756dfb885468defd4049d0c820 711 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 1.6E-186 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 PIRSF PIRSF000876 1 374 2.3E-126 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 374 38.576 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 Pfam PF00072 Response regulator receiver domain 5 109 6.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 Gene3D G3DSA:3.40.50.180 183 372 1.3E-64 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 Gene3D G3DSA:3.40.50.2300 2 130 6.7E-31 T 11-10-2018 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 SMART SM00448 3 126 2.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 SUPERFAMILY SSF52172 2 109 1.39E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 SUPERFAMILY SSF52738 185 370 1.7E-62 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c21630 6c8df51cde14d198bf0f64b18604a97d 376 Pfam PF01339 CheB methylesterase 191 368 4.8E-58 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c09750 743de7f01ce1fdbb46c41ceb9635c81f 284 SUPERFAMILY SSF53474 10 282 3.32E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c09750 743de7f01ce1fdbb46c41ceb9635c81f 284 Pfam PF00561 alpha/beta hydrolase fold 27 141 6.1E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c09750 743de7f01ce1fdbb46c41ceb9635c81f 284 Gene3D G3DSA:3.40.50.1820 3 277 2.2E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 SUPERFAMILY SSF55874 330 441 4.19E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 8.9E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 438 8.9E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 8.9E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 SMART SM00388 222 286 1.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 SUPERFAMILY SSF47384 207 284 2.75E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 Gene3D G3DSA:3.30.565.10 317 447 3.9E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 SMART SM00387 331 441 1.5E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 439 1.0E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 Gene3D G3DSA:1.10.287.130 173 286 4.0E-17 T 11-10-2018 VV93_v1c41690 e121db8a2dddb4aabedddcc65cb45e6d 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 226 285 2.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c02290 63021f32ef7b2c367fc479f3f92187d5 862 Pfam PF00593 TonB dependent receptor 336 860 5.5E-48 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c02290 63021f32ef7b2c367fc479f3f92187d5 862 SUPERFAMILY SSF56935 37 862 2.14E-94 T 11-10-2018 VV93_v1c02290 63021f32ef7b2c367fc479f3f92187d5 862 Gene3D G3DSA:2.170.130.10 31 171 1.3E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c02290 63021f32ef7b2c367fc479f3f92187d5 862 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 167 1.4E-24 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c36750 8ae57063108dcabe51d2c6e5c3f09301 542 SMART SM00990 425 536 1.8E-26 T 11-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 VV93_v1c36750 8ae57063108dcabe51d2c6e5c3f09301 542 Pfam PF08774 VRR-NUC domain 433 535 5.4E-23 T 11-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 VV93_v1c36750 8ae57063108dcabe51d2c6e5c3f09301 542 Gene3D G3DSA:3.40.1350.10 466 541 1.1E-9 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 Gene3D G3DSA:1.10.260.40 5 70 1.2E-21 T 11-10-2018 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 Gene3D G3DSA:3.40.50.2300 74 318 5.6E-77 T 11-10-2018 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 SMART SM00354 12 82 1.0E-25 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 11-10-2018 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 Pfam PF13377 Periplasmic binding protein-like domain 180 339 1.6E-26 T 11-10-2018 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 SUPERFAMILY SSF53822 70 327 9.64E-48 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 Gene3D G3DSA:3.40.50.2300 168 301 5.6E-77 T 11-10-2018 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 SUPERFAMILY SSF47413 12 70 1.13E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c42430 7986deb3ace491b4a4a95fb372a1db98 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.6E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 Gene3D G3DSA:3.30.70.920 54 149 1.4E-13 T 11-10-2018 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 SUPERFAMILY SSF54909 76 146 2.41E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 SMART SM00344 1 111 1.8E-21 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 SUPERFAMILY SSF46785 1 58 2.22E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 1.3E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 Gene3D G3DSA:1.10.10.10 1 52 6.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 Pfam PF01037 Lrp/AsnC ligand binding domain 76 140 5.6E-11 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 7.8E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 7.8E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41640 5a188cf3f10ae21e2d30d37a8d9393a2 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 7.8E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c22800 1320e4228314c9fb12f52e18a2862163 245 Pfam PF00849 RNA pseudouridylate synthase 11 170 5.4E-32 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c22800 1320e4228314c9fb12f52e18a2862163 245 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c22800 1320e4228314c9fb12f52e18a2862163 245 SUPERFAMILY SSF55120 2 237 4.96E-61 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c22800 1320e4228314c9fb12f52e18a2862163 245 Gene3D G3DSA:3.30.2350.10 1 225 4.6E-59 T 11-10-2018 VV93_v1c13800 821b78907f9c1143d684b98f64b4e528 123 Pfam PF03788 LrgA family 23 114 4.8E-26 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF11713 Peptidase C80 family 3285 3441 3.7E-53 T 11-10-2018 IPR020974 CGT/MARTX, cysteine protease (CPD) domain VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 SUPERFAMILY SSF158842 2746 3019 6.93E-107 T 11-10-2018 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 SUPERFAMILY SSF51120 4005 4094 6.15E-5 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:3.40.50.11050 3248 3465 3.0E-92 T 11-10-2018 IPR038383 CGT/MARTX, cysteine protease (CPD) domain superfamily VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:2.60.120.260 1459 1603 1.5E-5 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:3.40.50.11550 2996 3247 2.6E-96 T 11-10-2018 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF11647 Membrane Localization Domain 2760 2823 1.4E-22 T 11-10-2018 IPR020972 Dermonecrotic/RTX toxin, membrane localization domain VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 SUPERFAMILY SSF51120 4094 4299 5.62E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:2.160.20.160 3968 4250 3.8E-18 T 11-10-2018 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:1.10.3680.20 2160 2296 5.2E-69 T 11-10-2018 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF16671 Actin cross-linking domain 1973 2358 6.4E-231 T 11-10-2018 IPR032074 Actin cross-linking domain GO:0090527 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 207 224 0.48 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 584 600 1.1 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 275 288 0.5 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 255 272 3.1 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 141 157 0.014 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1087 1102 0.23 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1031 1043 0.36 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1125 1142 0.087 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 801 816 0.047 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 896 910 3.5 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 624 641 0.043 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 953 968 0.13 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 187 204 0.3 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 741 754 0.13 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 934 950 8.5 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1296 1313 0.0069 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 972 984 6.6 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1110 1122 5.8 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1242 1256 35.0 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 991 1006 0.1 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 839 855 0.19 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 121 138 0.012 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 877 891 0.17 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1201 1217 0.003 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1163 1179 0.037 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 858 875 0.44 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 820 835 0.074 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1067 1079 5.0 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 101 118 0.32 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 915 932 0.59 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1184 1199 0.014 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 161 184 0.0011 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1258 1275 1.8 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1315 1332 1.1 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1220 1236 3.1 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 782 798 0.16 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 1144 1159 0.47 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 759 769 4.2 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Pfam PF07634 RtxA repeat 644 658 3.5 T 11-10-2018 IPR011509 RtxA toxin VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 SUPERFAMILY SSF159501 3022 3243 1.05E-73 T 11-10-2018 VV93_v1c39730 aa436d73ccbb32c27c72d5e07c8098ba 4372 Gene3D G3DSA:1.20.140.180 2753 2893 1.3E-60 T 11-10-2018 VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 Gene3D G3DSA:2.160.10.10 1 200 5.3E-68 T 11-10-2018 VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 164 3.1E-12 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 SUPERFAMILY SSF51161 3 194 3.05E-55 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 SMART SM01266 4 58 1.6E-16 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c36150 eb2bc30914ba7ede59abe5c4b0e790f8 203 Pfam PF12464 Maltose acetyltransferase 6 57 6.2E-11 T 11-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 SUPERFAMILY SSF54534 81 156 7.98E-24 T 11-10-2018 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 31.554 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 6.5E-28 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 5.3E-54 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 PIRSF PIRSF006092 1 157 4.4E-48 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 SUPERFAMILY SSF46557 2 75 5.49E-25 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 1.2E-24 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 Gene3D G3DSA:1.10.287.180 1 74 7.8E-25 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 47 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VV93_v1c24340 3447e47c1d4980544692625facd3423f 157 Gene3D G3DSA:3.10.50.30 75 157 1.1E-30 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 PRINTS PR01713 Nucleotide sugar epimerase signature 231 246 5.5E-6 T 11-10-2018 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 5.5E-6 T 11-10-2018 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 5.5E-6 T 11-10-2018 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 SUPERFAMILY SSF51735 1 337 4.76E-96 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 Gene3D G3DSA:3.40.50.720 3 274 3.5E-139 T 11-10-2018 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 Gene3D G3DSA:3.90.25.10 194 329 3.5E-139 T 11-10-2018 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 5.7E-137 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 VV93_v1c44880 8fc55a3cd44ad97c5e4826c0c2aea860 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 1.0E-55 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 SUPERFAMILY SSF51905 100 529 3.73E-37 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 Gene3D G3DSA:3.30.70.2700 1 80 6.9E-30 T 11-10-2018 VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 PIRSF PIRSF038984 1 535 1.1E-240 T 11-10-2018 IPR028348 FAD dependent protein VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 Gene3D G3DSA:3.50.50.60 85 304 8.4E-91 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 Gene3D G3DSA:3.50.50.60 470 533 8.9E-16 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c31680 03fe5ebd09a134faa82e2c66db3bf97b 538 Pfam PF01593 Flavin containing amine oxidoreductase 214 267 3.1E-4 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 431 595 1.4E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Gene3D G3DSA:3.30.450.20 53 267 1.1E-49 T 11-10-2018 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 SMART SM00304 295 352 2.7E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 SMART SM00304 387 454 70.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Gene3D G3DSA:1.10.287.950 301 629 9.1E-70 T 11-10-2018 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 SUPERFAMILY SSF58104 320 629 1.57E-76 T 11-10-2018 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Gene3D G3DSA:3.30.450.20 64 171 1.1E-49 T 11-10-2018 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Pfam PF02743 Cache domain 39 260 4.7E-25 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 Pfam PF00672 HAMP domain 304 348 1.6E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 SMART SM00283 367 628 8.0E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38980 68951c31454875c718fef53c886fba37 629 SUPERFAMILY SSF103190 81 177 5.49E-8 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 SMART SM00895 99 227 3.7E-18 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 Pfam PF07729 FCD domain 99 226 2.4E-17 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 3.5E-25 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 Gene3D G3DSA:1.20.120.530 97 236 6.8E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 SUPERFAMILY SSF48008 98 235 1.15E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 Gene3D G3DSA:1.10.10.10 1 74 4.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 SMART SM00345 15 74 1.3E-27 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c24860 86b4cf2552052ae117a02d49760c8862 255 SUPERFAMILY SSF46785 5 76 2.73E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c23020 d8fa51446ed2d139323c1be252e22e82 335 Gene3D G3DSA:3.10.520.20 15 335 1.9E-111 T 11-10-2018 VV93_v1c23020 d8fa51446ed2d139323c1be252e22e82 335 SUPERFAMILY SSF143631 23 332 2.04E-99 T 11-10-2018 IPR003374 ApbE-like superfamily VV93_v1c23020 d8fa51446ed2d139323c1be252e22e82 335 PIRSF PIRSF006268 1 333 1.7E-94 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VV93_v1c23020 d8fa51446ed2d139323c1be252e22e82 335 Pfam PF02424 ApbE family 31 308 8.8E-85 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 VV93_v1c37100 cc7ba54fd470c059bafb168c9222476b 459 Pfam PF07690 Major Facilitator Superfamily 36 392 9.9E-43 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c37100 cc7ba54fd470c059bafb168c9222476b 459 PIRSF PIRSF002808 13 454 2.1E-102 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VV93_v1c37100 cc7ba54fd470c059bafb168c9222476b 459 Gene3D G3DSA:1.20.1250.20 21 219 9.2E-38 T 11-10-2018 VV93_v1c37100 cc7ba54fd470c059bafb168c9222476b 459 SUPERFAMILY SSF103473 19 450 3.4E-63 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c37100 cc7ba54fd470c059bafb168c9222476b 459 Gene3D G3DSA:1.20.1250.20 242 443 5.9E-34 T 11-10-2018 VV93_v1c15040 20261527d0852c13185e75eaad28a78e 266 Gene3D G3DSA:3.40.190.10 102 202 4.6E-36 T 11-10-2018 VV93_v1c15040 20261527d0852c13185e75eaad28a78e 266 SUPERFAMILY SSF53850 19 225 1.89E-18 T 11-10-2018 VV93_v1c15040 20261527d0852c13185e75eaad28a78e 266 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 23 253 1.0E-51 T 11-10-2018 VV93_v1c15040 20261527d0852c13185e75eaad28a78e 266 Gene3D G3DSA:3.40.190.10 23 230 4.6E-36 T 11-10-2018 VV93_v1c26280 58a6d4073ff89f28cd8f93d11e2e4d49 158 Pfam PF06271 RDD family 9 148 1.7E-21 T 11-10-2018 IPR010432 RDD VV93_v1c39080 7aab2adab6c4cd16f08d75d0149cac80 455 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 441 2.0E-144 T 11-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 VV93_v1c39080 7aab2adab6c4cd16f08d75d0149cac80 455 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 451 2.0E-125 T 11-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Gene3D G3DSA:2.60.120.10 1 136 4.5E-22 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Gene3D G3DSA:3.10.580.10 143 278 1.3E-31 T 11-10-2018 VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 SUPERFAMILY SSF54631 146 275 4.04E-26 T 11-10-2018 VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 SMART SM00116 159 212 0.22 T 11-10-2018 IPR000644 CBS domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 SMART SM00116 229 276 1.4E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Pfam PF00571 CBS domain 222 274 1.2E-9 T 11-10-2018 IPR000644 CBS domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Pfam PF00571 CBS domain 153 210 8.2E-8 T 11-10-2018 IPR000644 CBS domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Pfam PF00027 Cyclic nucleotide-binding domain 37 119 7.3E-14 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Pfam PF03445 Putative nucleotidyltransferase DUF294 301 438 1.7E-45 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 SMART SM00100 17 134 1.6E-8 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 SUPERFAMILY SSF51206 5 135 2.09E-25 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c18650 367337b2848cdbb90f043b10b3245153 625 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 474 618 7.9E-47 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 Gene3D G3DSA:3.40.50.300 2 149 3.4E-25 T 11-10-2018 VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 Gene3D G3DSA:3.40.50.300 194 352 2.8E-32 T 11-10-2018 VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 SMART SM00487 2 162 9.0E-6 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 SUPERFAMILY SSF57829 409 450 2.01E-6 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 SUPERFAMILY SSF52540 33 345 9.67E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 Pfam PF04851 Type III restriction enzyme, res subunit 8 139 1.9E-19 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 SMART SM00490 246 329 2.2E-11 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c13350 4db89ca147c96596afff33cfa173580c 565 Pfam PF00271 Helicase conserved C-terminal domain 224 327 1.7E-13 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 Pfam PF02096 60Kd inner membrane protein 350 529 6.3E-63 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 Gene3D G3DSA:2.70.98.90 60 329 1.8E-88 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 349 528 2.3E-72 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 320 340 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 458 480 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 411 434 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 70 91 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 495 518 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 160 180 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 2 23 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 248 263 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR00701 60kDa inner membrane protein signature 213 231 6.6E-99 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR01900 YidC translocation/secretion protein signature 484 508 1.8E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR01900 YidC translocation/secretion protein signature 335 351 1.8E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 PRINTS PR01900 YidC translocation/secretion protein signature 464 479 1.8E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 348 5.5E-111 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 531 25.794 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 VV93_v1c30060 104761f494cdf301b2ab719a85256e47 539 Pfam PF14849 YidC periplasmic domain 65 339 2.6E-83 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain VV93_v1c03500 e42ef59624df434beee326673e58f593 92 Pfam PF00203 Ribosomal protein S19 3 83 3.5E-36 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 7.7E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 7.7E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 7.7E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 Gene3D G3DSA:3.30.860.10 1 92 1.4E-43 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.647 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 2.2E-46 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 SUPERFAMILY SSF54570 3 84 2.62E-35 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03500 e42ef59624df434beee326673e58f593 92 PIRSF PIRSF002144 1 92 3.0E-31 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 Pfam PF07729 FCD domain 78 207 5.8E-14 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 68 1.8E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 SUPERFAMILY SSF46785 2 78 1.16E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 SUPERFAMILY SSF48008 74 215 4.45E-15 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 Gene3D G3DSA:1.20.120.530 72 218 1.3E-17 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 SMART SM00345 10 68 1.5E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 SMART SM00895 78 208 5.3E-7 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c04650 655f3813d826f369db301e23d8f748f7 220 Gene3D G3DSA:1.10.10.10 1 69 1.6E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c35740 3f8a5b8659d6ed1aa48f05707296f997 292 Pfam PF13407 Periplasmic binding protein domain 28 277 5.3E-60 T 11-10-2018 IPR025997 Periplasmic binding protein VV93_v1c35740 3f8a5b8659d6ed1aa48f05707296f997 292 Gene3D G3DSA:3.40.50.2300 125 259 2.1E-96 T 11-10-2018 VV93_v1c35740 3f8a5b8659d6ed1aa48f05707296f997 292 SUPERFAMILY SSF53822 8 292 1.18E-86 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c35740 3f8a5b8659d6ed1aa48f05707296f997 292 Gene3D G3DSA:3.40.50.2300 31 278 2.1E-96 T 11-10-2018 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 Pfam PF00691 OmpA family 243 338 1.1E-24 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 Gene3D G3DSA:3.30.1330.60 227 351 4.7E-42 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 ProSitePatterns PS01068 OmpA-like domain. 276 320 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 Pfam PF01389 OmpA-like transmembrane domain 27 182 1.9E-21 T 11-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 SUPERFAMILY SSF56925 24 183 4.45E-33 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 SUPERFAMILY SSF103088 234 344 1.57E-36 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 PRINTS PR01021 OMPA domain signature 274 289 6.5E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 PRINTS PR01021 OMPA domain signature 244 266 6.5E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 PRINTS PR01021 OMPA domain signature 289 305 6.5E-12 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c40460 62ee11e9a7d18d93a0f27544132d55ba 357 Gene3D G3DSA:2.40.160.20 12 209 8.4E-41 T 11-10-2018 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 SUPERFAMILY SSF56327 173 436 5.76E-92 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 Pfam PF02056 Family 4 glycosyl hydrolase 7 186 3.9E-60 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 Gene3D G3DSA:3.40.50.720 1 170 1.6E-65 T 11-10-2018 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 411 4.4E-48 T 11-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 Gene3D G3DSA:3.90.110.10 171 439 2.8E-98 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 SUPERFAMILY SSF51735 5 170 3.2E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 78 94 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 99 112 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c26040 f564d9628407888f2ad742a144303277 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 7 22 3.7E-47 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 SUPERFAMILY SSF64518 1 384 9.81E-97 T 11-10-2018 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Gene3D G3DSA:1.20.1330.10 44 333 6.3E-75 T 11-10-2018 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Gene3D G3DSA:1.10.8.410 334 384 1.2E-21 T 11-10-2018 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.4E-42 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Pfam PF00700 Bacterial flagellin C-terminal helical region 298 383 1.6E-26 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Gene3D G3DSA:3.30.70.2120 174 282 6.3E-75 T 11-10-2018 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 PRINTS PR00207 Flagellin signature 76 95 1.0E-24 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 PRINTS PR00207 Flagellin signature 37 54 1.0E-24 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 PRINTS PR00207 Flagellin signature 111 134 1.0E-24 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c08990 9c269bcc4881d0014e9ebd6fd668f785 385 Pfam PF07196 Flagellin hook IN motif 209 252 2.0E-8 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c38820 b807b3c76f21ee804bb74e60bcee16d6 328 SUPERFAMILY SSF52540 4 171 3.81E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c38820 b807b3c76f21ee804bb74e60bcee16d6 328 Gene3D G3DSA:3.40.50.300 2 198 5.9E-44 T 11-10-2018 VV93_v1c38820 b807b3c76f21ee804bb74e60bcee16d6 328 SMART SM00833 241 324 0.0095 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal VV93_v1c38820 b807b3c76f21ee804bb74e60bcee16d6 328 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 177 9.3E-42 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 123 4.0E-67 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 28.988 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 Gene3D G3DSA:1.10.1220.10 98 149 3.4E-24 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 4.2E-26 T 11-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 Pfam PF06303 MatP N-terminal domain 2 85 6.5E-42 T 11-10-2018 IPR035087 MatP, N-terminal VV93_v1c15360 76c1f3ecc4b15cabc3f25107f910ce8d 149 Gene3D G3DSA:1.20.1270.380 1 89 1.3E-47 T 11-10-2018 IPR038339 MatP, N-terminal domain superfamily VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 Pfam PF00072 Response regulator receiver domain 7 117 1.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 SUPERFAMILY SSF52172 3 126 4.41E-42 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 SMART SM00448 5 116 6.1E-45 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 SUPERFAMILY SSF46894 132 234 1.47E-26 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 3.2E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 Gene3D G3DSA:1.10.10.10 130 238 3.1E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 SMART SM00862 156 232 8.3E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c02150 11f0cc8fedfbcd10aa010c51c3ec291f 239 Gene3D G3DSA:3.40.50.2300 1 125 4.9E-40 T 11-10-2018 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 SMART SM00283 316 577 1.8E-59 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 Gene3D G3DSA:1.10.287.950 248 578 1.5E-64 T 11-10-2018 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 16 41 3.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 3.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 441 3.7E-21 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 388 544 1.7E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 SMART SM00304 304 354 76.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 SMART SM00304 248 301 0.0037 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c43710 a56d55f26ad3f29e9bcece167f6afa55 578 SUPERFAMILY SSF58104 269 577 6.28E-67 T 11-10-2018 VV93_v1c43270 7a218b840cc8f64bf8076c6e5217b620 179 Gene3D G3DSA:3.90.280.10 11 179 1.3E-52 T 11-10-2018 IPR036610 PEBP-like superfamily VV93_v1c43270 7a218b840cc8f64bf8076c6e5217b620 179 Pfam PF01161 Phosphatidylethanolamine-binding protein 46 177 7.2E-36 T 11-10-2018 IPR008914 Phosphatidylethanolamine-binding protein VV93_v1c43270 7a218b840cc8f64bf8076c6e5217b620 179 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 45 177 5.9E-38 T 11-10-2018 IPR005247 YbhB/YbcL VV93_v1c43270 7a218b840cc8f64bf8076c6e5217b620 179 SUPERFAMILY SSF49777 24 179 3.79E-49 T 11-10-2018 IPR036610 PEBP-like superfamily VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 SUPERFAMILY SSF81464 25 117 2.13E-27 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 SUPERFAMILY SSF49503 115 315 2.89E-52 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 191 239 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 37 255 3.0E-60 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 166 187 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 97 117 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 119 138 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 210 227 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 190 210 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 228 245 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 PRINTS PR01166 Cytochrome c oxidase subunit II signature 85 97 8.4E-40 T 11-10-2018 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 25 108 6.5E-15 T 11-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 282 356 2.3E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Gene3D G3DSA:1.10.287.90 25 119 1.2E-25 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Gene3D G3DSA:2.60.40.420 120 259 2.1E-53 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Gene3D G3DSA:1.10.760.10 263 384 2.2E-30 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 123 245 2.7E-36 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40550 c175e879276d4f1fae7d4ca8a25636e5 386 SUPERFAMILY SSF46626 266 371 2.72E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 3 332 4.0E-167 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 SUPERFAMILY SSF52518 4 319 7.77E-121 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Pfam PF02779 Transketolase, pyrimidine binding domain 353 523 5.3E-48 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 4 662 0.0 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Gene3D G3DSA:3.40.50.970 325 536 1.2E-85 T 11-10-2018 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Gene3D G3DSA:3.40.50.920 537 663 2.1E-46 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 SUPERFAMILY SSF52518 332 525 1.89E-68 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Pfam PF02780 Transketolase, C-terminal domain 540 654 5.5E-21 T 11-10-2018 IPR033248 Transketolase, C-terminal domain VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 ProSitePatterns PS00801 Transketolase signature 1. 11 31 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 SUPERFAMILY SSF52922 532 663 5.76E-45 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 SMART SM00861 353 524 2.1E-67 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c40410 8068ecc88a3b0a19b93e996c40f115fa 663 Gene3D G3DSA:3.40.50.970 1 324 3.0E-132 T 11-10-2018 VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 Gene3D G3DSA:3.40.50.970 1 193 2.9E-75 T 11-10-2018 VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 SUPERFAMILY SSF52922 190 323 1.57E-37 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 SUPERFAMILY SSF52518 4 191 2.62E-65 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 Gene3D G3DSA:3.40.50.920 198 324 1.7E-42 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 SMART SM00861 4 179 4.6E-63 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 3.4E-49 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain VV93_v1c39650 79dcc17c5be10e52f320d8cbdf24e789 327 Pfam PF02780 Transketolase, C-terminal domain 198 315 1.9E-36 T 11-10-2018 IPR033248 Transketolase, C-terminal domain VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.4E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.4E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 Pfam PF13377 Periplasmic binding protein-like domain 168 314 6.0E-30 T 11-10-2018 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 1.2E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 Gene3D G3DSA:3.40.50.2300 55 306 1.9E-66 T 11-10-2018 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 SUPERFAMILY SSF53822 61 315 2.57E-67 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 Gene3D G3DSA:1.10.260.40 1 54 2.6E-21 T 11-10-2018 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 SMART SM00354 1 71 2.5E-29 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 Gene3D G3DSA:3.40.50.2300 160 289 1.9E-66 T 11-10-2018 VV93_v1c26020 bc0c4a4c1f184a1f9d39f84654ce3bee 331 SUPERFAMILY SSF47413 2 59 2.28E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c20710 86424cbf19b1e3211c9ede7ceb925118 401 Pfam PF02687 FtsX-like permease family 295 394 2.8E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c20710 86424cbf19b1e3211c9ede7ceb925118 401 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 401 3.5E-131 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VV93_v1c20710 86424cbf19b1e3211c9ede7ceb925118 401 Pfam PF12704 MacB-like periplasmic core domain 29 202 1.2E-11 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c16340 12f00b50801fd97f39c8c3d8cc764a30 89 SUPERFAMILY SSF143011 8 88 5.89E-28 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c16340 12f00b50801fd97f39c8c3d8cc764a30 89 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 10 89 7.0E-36 T 11-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 VV93_v1c16340 12f00b50801fd97f39c8c3d8cc764a30 89 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 10 89 6.4E-43 T 11-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 VV93_v1c16340 12f00b50801fd97f39c8c3d8cc764a30 89 Gene3D G3DSA:3.30.2310.20 7 89 8.3E-41 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 SMART SM00020 29 280 3.1E-32 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 Gene3D G3DSA:2.40.10.10 22 284 5.5E-48 T 11-10-2018 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 SUPERFAMILY SSF50494 14 287 1.34E-52 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 75 80 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 65 80 1.8E-11 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 227 239 1.8E-11 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 129 143 1.8E-11 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 Pfam PF00089 Trypsin 57 280 6.7E-33 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c36950 45c0def4d0f108108a6ee58976e5e31e 364 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 228 239 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 338 7.5E-86 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 SUPERFAMILY SSF111369 47 262 1.7E-37 T 11-10-2018 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 Gene3D G3DSA:2.40.30.170 45 267 2.8E-68 T 11-10-2018 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 Gene3D G3DSA:2.40.50.100 57 185 2.8E-68 T 11-10-2018 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 Gene3D G3DSA:1.10.287.470 92 151 2.8E-68 T 11-10-2018 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 Gene3D G3DSA:2.40.420.20 268 335 2.8E-68 T 11-10-2018 VV93_v1c10480 28a3f877dcf7332a62b082e0eb58c814 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 257 1.5E-30 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Pfam PF01588 Putative tRNA binding domain 595 687 4.4E-26 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Gene3D G3DSA:3.40.50.620 14 389 1.2E-159 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 SUPERFAMILY SSF50249 588 689 1.13E-34 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Gene3D G3DSA:2.20.28.20 147 181 1.2E-159 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 556 689 4.1E-48 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 15 28 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 296 311 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 47 61 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 95 106 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 389 400 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 PRINTS PR01041 Methionyl-tRNA synthetase signature 256 267 1.7E-24 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Gene3D G3DSA:1.10.730.10 394 531 2.2E-34 T 11-10-2018 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 14 540 9.7E-199 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 SUPERFAMILY SSF57770 147 181 6.02E-13 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 SUPERFAMILY SSF52374 10 392 1.34E-98 T 11-10-2018 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 20 31 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Pfam PF09334 tRNA synthetases class I (M) 14 401 5.7E-164 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 SUPERFAMILY SSF47323 391 603 6.35E-44 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Gene3D G3DSA:2.40.50.140 579 690 1.9E-36 T 11-10-2018 VV93_v1c11770 e8b6aa5238759fa4032f9b35f5bd0aec 690 Hamap MF_00098 Methionine--tRNA ligase [metG]. 11 550 41.289 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c38000 4e2540e3f95ae87f816d841d82a0d1fb 455 Pfam PF05707 Zonular occludens toxin (Zot) 2 256 5.9E-44 T 11-10-2018 IPR008900 Zona occludens toxin VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 2.1E-106 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 Pfam PF00551 Formyl transferase 6 183 1.4E-47 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 Gene3D G3DSA:3.10.25.10 210 314 7.4E-37 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 303 1.9E-28 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 SUPERFAMILY SSF53328 3 207 1.44E-67 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 SUPERFAMILY SSF50486 208 310 2.98E-32 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 Gene3D G3DSA:3.40.50.170 1 209 2.4E-87 T 11-10-2018 VV93_v1c29480 130d4702028ea1444d7089bb2235a3e0 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 306 36.76 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 Hamap MF_00987 L-fuculose phosphate aldolase [fucA]. 1 215 56.43 T 11-10-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 182 2.1E-43 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 SMART SM01007 8 182 3.1E-60 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 TIGRFAM TIGR01086 fucA: L-fuculose phosphate aldolase 2 215 2.7E-134 T 11-10-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 Gene3D G3DSA:3.40.225.10 1 215 1.2E-72 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c19170 2236de8de35ebd9aebb870ecca26e21f 215 SUPERFAMILY SSF53639 1 212 6.67E-63 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c03350 f6e377bbd245d2de1a8a21d0a9c72e4c 215 Gene3D G3DSA:2.160.10.10 92 205 5.4E-31 T 11-10-2018 VV93_v1c03350 f6e377bbd245d2de1a8a21d0a9c72e4c 215 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 120 154 6.7E-6 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c03350 f6e377bbd245d2de1a8a21d0a9c72e4c 215 Gene3D G3DSA:3.40.50.20 2 90 1.5E-22 T 11-10-2018 VV93_v1c03350 f6e377bbd245d2de1a8a21d0a9c72e4c 215 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 8 210 7.9E-55 T 11-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like VV93_v1c03350 f6e377bbd245d2de1a8a21d0a9c72e4c 215 SUPERFAMILY SSF51161 8 213 4.71E-38 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 Gene3D G3DSA:3.30.70.580 62 228 4.0E-57 T 11-10-2018 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 SUPERFAMILY SSF55120 60 228 4.0E-43 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 SUPERFAMILY SSF55174 1 56 1.15E-11 T 11-10-2018 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 98 112 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 65 225 2.9E-49 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 SMART SM00363 1 59 2.4E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 Pfam PF01479 S4 domain 1 44 2.7E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 Gene3D G3DSA:3.10.290.10 1 61 2.2E-17 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 Pfam PF00849 RNA pseudouridylate synthase 61 193 2.7E-17 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c13380 a2545256e908cd58d0d9d361877b933e 233 Gene3D G3DSA:3.30.70.1560 127 210 4.0E-57 T 11-10-2018 VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 Gene3D G3DSA:3.30.70.1450 141 216 7.7E-14 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 SUPERFAMILY SSF51735 6 136 4.31E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 SUPERFAMILY SSF116726 134 215 3.79E-15 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 Pfam PF02254 TrkA-N domain 8 123 4.2E-27 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 Pfam PF02080 TrkA-C domain 154 214 1.0E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c10840 e4cecda0e96b7252f4d69af8215b7934 220 Gene3D G3DSA:3.40.50.720 2 140 4.3E-34 T 11-10-2018 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 Gene3D G3DSA:3.40.190.10 93 279 7.1E-16 T 11-10-2018 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 SUPERFAMILY SSF53850 90 289 5.61E-24 T 11-10-2018 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 6.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 Gene3D G3DSA:3.40.190.10 163 265 7.1E-16 T 11-10-2018 VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 Pfam PF03466 LysR substrate binding domain 89 290 3.5E-25 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 SUPERFAMILY SSF46785 2 110 2.52E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c31130 b4ced0ded60cf51170c180e063edeeb7 291 Gene3D G3DSA:1.10.10.10 4 89 3.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 SMART SM00304 295 349 5.6E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 SMART SM00304 566 622 110.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 SMART SM00283 364 618 1.5E-53 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 SUPERFAMILY SSF58104 315 625 5.89E-63 T 11-10-2018 VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 Gene3D G3DSA:1.10.287.950 295 610 1.7E-65 T 11-10-2018 VV93_v1c20540 3023475ab269b3e9ef5b9fc9de2aadc9 626 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 591 4.2E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 28 373 5.1E-132 T 11-10-2018 IPR019936 Mutatrotase, YjhT-like VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 Pfam PF01344 Kelch motif 81 129 9.7E-9 T 11-10-2018 IPR006652 Kelch repeat type 1 GO:0005515 VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 SUPERFAMILY SSF117281 46 376 8.89E-29 T 11-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 Gene3D G3DSA:2.120.10.80 188 380 7.3E-9 T 11-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 Hamap MF_01195 N-acetylneuraminate epimerase [nanM]. 7 384 45.431 T 11-10-2018 IPR019936 Mutatrotase, YjhT-like VV93_v1c41240 a9a3d128e0017f43a06f2e6795521db4 384 Gene3D G3DSA:2.120.10.80 22 187 6.7E-15 T 11-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 SUPERFAMILY SSF52540 6 226 2.1E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 SMART SM00382 34 216 1.9E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 Gene3D G3DSA:3.40.50.300 3 278 2.5E-62 T 11-10-2018 VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 Pfam PF00005 ABC transporter 25 166 9.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c38880 4e563e15f72e0628e40d25991dd6703e 280 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 25 254 5.9E-105 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 SMART SM00448 5 118 1.3E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 Gene3D G3DSA:3.40.50.180 149 344 1.5E-69 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 Pfam PF00072 Response regulator receiver domain 7 110 2.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 Gene3D G3DSA:3.40.50.2300 2 134 1.1E-30 T 11-10-2018 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 SUPERFAMILY SSF52738 155 343 2.22E-67 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 Pfam PF01339 CheB methylesterase 160 338 5.6E-58 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 SUPERFAMILY SSF52172 3 110 1.57E-27 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 PIRSF PIRSF000876 2 344 1.1E-131 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c45430 8602ff4122e7275a8d09a79b54c96f9e 344 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 344 39.369 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 Pfam PF00227 Proteasome subunit 2 170 2.4E-24 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 PIRSF PIRSF039093 1 175 7.0E-88 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 SUPERFAMILY SSF56235 2 172 4.68E-58 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 42.2 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 Gene3D G3DSA:3.60.20.10 1 173 5.6E-68 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c27430 46ffb0072566f1c3398f626cc3ebd866 184 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 2.9E-87 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 Gene3D G3DSA:3.30.230.10 1 107 8.5E-38 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 Pfam PF00825 Ribonuclease P 1 101 7.9E-31 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 45 59 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 SUPERFAMILY SSF54211 1 103 8.6E-29 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 6 102 5.8E-27 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 104 13.106 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VV93_v1c30070 b9870d8c8b46ee84166185e20c6f07db 107 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 5 93 3.0E-46 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.717 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 Gene3D G3DSA:3.30.63.10 37 96 6.6E-74 T 11-10-2018 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 6.2E-76 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 Pfam PF00625 Guanylate kinase 5 185 7.0E-61 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 SUPERFAMILY SSF52540 3 189 2.65E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 Gene3D G3DSA:3.40.50.300 8 183 6.6E-74 T 11-10-2018 VV93_v1c02220 48d5baf2e630c0eb8f97f6577c7a5733 207 SMART SM00072 3 187 2.2E-73 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 Gene3D G3DSA:3.40.190.10 163 272 1.1E-65 T 11-10-2018 VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 SUPERFAMILY SSF53850 89 303 5.97E-41 T 11-10-2018 VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 SUPERFAMILY SSF46785 4 85 1.7E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 Gene3D G3DSA:3.40.190.10 92 297 1.1E-65 T 11-10-2018 VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 Pfam PF03466 LysR substrate binding domain 88 301 1.6E-45 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c44680 f0793acd6727f5e13e902560ee5319f4 308 Gene3D G3DSA:1.10.10.10 3 91 6.8E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Pfam PF00128 Alpha amylase, catalytic domain 178 495 4.6E-80 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Pfam PF16657 Maltogenic Amylase, C-terminal domain 531 592 4.7E-7 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 6 109 8.5E-9 T 11-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Gene3D G3DSA:3.20.20.80 114 524 1.7E-140 T 11-10-2018 VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Gene3D G3DSA:2.60.40.1180 526 611 4.1E-12 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 PIRSF PIRSF036918 1 612 6.6E-271 T 11-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 SUPERFAMILY SSF51445 114 531 2.31E-101 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 Gene3D G3DSA:2.60.40.10 4 110 9.0E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 SUPERFAMILY SSF81296 1 109 4.43E-25 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 SMART SM00642 126 522 1.6E-90 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c18920 bf918cc526c881bf08b28a8ca28cab61 612 SUPERFAMILY SSF51011 531 611 6.68E-12 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 Gene3D G3DSA:1.10.287.470 103 162 7.0E-74 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 1.5E-75 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 SUPERFAMILY SSF111369 58 273 5.1E-42 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 Gene3D G3DSA:2.40.30.170 58 279 7.0E-74 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 Gene3D G3DSA:2.40.420.20 280 351 7.0E-74 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 Gene3D G3DSA:2.40.50.100 68 196 7.0E-74 T 11-10-2018 VV93_v1c00340 0ef3af91017ed0f13876e481ae59e384 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 269 2.5E-27 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 Gene3D G3DSA:1.20.1260.10 1 158 5.5E-72 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 23 43 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 3 22 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 65 85 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 86 106 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 107 127 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 44 64 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PRINTS PR00601 Bacterioferritin signature 128 149 3.0E-72 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 PIRSF PIRSF002560 1 157 2.3E-73 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 SUPERFAMILY SSF47240 1 153 4.06E-55 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 1.7E-82 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 Pfam PF00210 Ferritin-like domain 8 143 1.8E-39 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VV93_v1c27550 5bdd14f36f4376b540ff541a412e493a 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 VV93_v1c38960 cd98f3f277d4cd01ebbbea52c80c1b15 156 Pfam PF00583 Acetyltransferase (GNAT) family 39 124 2.8E-17 T 11-10-2018 IPR000182 GNAT domain VV93_v1c38960 cd98f3f277d4cd01ebbbea52c80c1b15 156 SUPERFAMILY SSF55729 1 142 4.53E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c38960 cd98f3f277d4cd01ebbbea52c80c1b15 156 Gene3D G3DSA:3.40.630.30 1 148 3.1E-32 T 11-10-2018 VV93_v1c08280 972c997f0e1776995f082c1576a53746 225 SUPERFAMILY SSF161098 15 210 1.03E-47 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c08280 972c997f0e1776995f082c1576a53746 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 223 1.0E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c08280 972c997f0e1776995f082c1576a53746 225 Gene3D G3DSA:1.10.3720.10 12 225 4.7E-52 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c40090 bb74c3aa6fa0245be24b997467f3f93b 452 Pfam PF12821 Threonine/Serine exporter, ThrE 320 441 3.5E-7 T 11-10-2018 IPR024528 Threonine/Serine exporter, ThrE VV93_v1c40090 bb74c3aa6fa0245be24b997467f3f93b 452 Pfam PF06738 Putative threonine/serine exporter 75 295 7.2E-20 T 11-10-2018 IPR010619 Putative threonine/serine exporter VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 Gene3D G3DSA:3.90.79.10 1 159 6.1E-51 T 11-10-2018 VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 SUPERFAMILY SSF55811 6 152 1.22E-31 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 Pfam PF00293 NUDIX domain 7 145 3.1E-27 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.482 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 PRINTS PR00502 NUDIX hydrolase family signature 33 47 7.5E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c06150 389b2d48e0f5cf720bab8b76b089ec83 172 PRINTS PR00502 NUDIX hydrolase family signature 47 62 7.5E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c26900 3041eeb8fd1249e7ac5f73da73c4eb04 113 Gene3D G3DSA:3.30.420.470 5 90 5.5E-9 T 11-10-2018 VV93_v1c26900 3041eeb8fd1249e7ac5f73da73c4eb04 113 Pfam PF13358 DDE superfamily endonuclease 6 87 1.4E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c00260 3041eeb8fd1249e7ac5f73da73c4eb04 113 Gene3D G3DSA:3.30.420.470 5 90 5.5E-9 T 11-10-2018 VV93_v1c00260 3041eeb8fd1249e7ac5f73da73c4eb04 113 Pfam PF13358 DDE superfamily endonuclease 6 87 1.4E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c37230 918e41721b98cdac9b1473cf57b69209 222 Gene3D G3DSA:3.40.50.1000 9 196 4.1E-42 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c37230 918e41721b98cdac9b1473cf57b69209 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 78 188 4.1E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c37230 918e41721b98cdac9b1473cf57b69209 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 188 2.4E-26 T 11-10-2018 VV93_v1c37230 918e41721b98cdac9b1473cf57b69209 222 Gene3D G3DSA:1.10.150.240 21 88 4.1E-42 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VV93_v1c37230 918e41721b98cdac9b1473cf57b69209 222 SUPERFAMILY SSF56784 5 218 2.76E-44 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 SUPERFAMILY SSF53448 3 358 9.15E-79 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 96 104 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 SUPERFAMILY SSF51161 296 396 1.08E-17 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 404 49.562 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 378 9.4E-154 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 Gene3D G3DSA:2.160.10.10 282 403 2.6E-32 T 11-10-2018 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 194 204 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 Pfam PF00483 Nucleotidyl transferase 6 272 7.7E-69 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VV93_v1c37170 6986528e107e3a75516491a5a82786fe 404 Gene3D G3DSA:3.90.550.10 1 281 1.8E-90 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 17 34 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 321 327 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 41 53 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 355 367 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 25 35 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 12 24 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 86 98 2.7E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 Pfam PF01266 FAD dependent oxidoreductase 13 331 2.5E-51 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 360 370 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 Gene3D G3DSA:3.50.50.60 13 374 1.6E-143 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 SUPERFAMILY SSF51905 11 330 8.14E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 SUPERFAMILY SSF54373 234 327 3.14E-7 T 11-10-2018 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 Gene3D G3DSA:3.30.9.10 90 328 1.6E-143 T 11-10-2018 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 Gene3D G3DSA:1.10.8.870 400 469 2.6E-20 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c23420 186ac0a7e25926b9f65021481c895b09 513 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 389 494 1.9E-10 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 SUPERFAMILY SSF52172 3 130 2.39E-8 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 SUPERFAMILY SSF47384 335 371 1.55E-6 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Gene3D G3DSA:2.60.120.10 158 318 1.2E-18 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 639 1.8E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Gene3D G3DSA:3.40.50.2300 3 142 2.5E-8 T 11-10-2018 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 SMART SM00387 528 641 3.0E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 7.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 587 597 7.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 583 7.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 7.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 SUPERFAMILY SSF55874 482 641 5.5E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Pfam PF00512 His Kinase A (phospho-acceptor) domain 340 366 1.3E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Pfam PF00027 Cyclic nucleotide-binding domain 202 289 1.8E-14 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 SUPERFAMILY SSF51206 201 311 9.3E-19 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c13610 fb1c11cefe95534944a11391be6b40f8 647 Gene3D G3DSA:3.30.565.10 488 646 2.6E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c33210 05e2991726a7da74eae24da1c115a076 240 SUPERFAMILY SSF51069 23 237 6.15E-72 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VV93_v1c33210 05e2991726a7da74eae24da1c115a076 240 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 110 126 - T 11-10-2018 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 VV93_v1c33210 05e2991726a7da74eae24da1c115a076 240 Gene3D G3DSA:3.10.200.10 23 238 6.0E-80 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily VV93_v1c33210 05e2991726a7da74eae24da1c115a076 240 SMART SM01057 24 239 1.2E-88 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain VV93_v1c33210 05e2991726a7da74eae24da1c115a076 240 Pfam PF00194 Eukaryotic-type carbonic anhydrase 23 238 1.6E-49 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 184 201 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 63 80 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 166 184 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 110 132 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 80 99 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PRINTS PR01398 Isochorismatase signature 2 14 2.7E-50 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 SUPERFAMILY SSF52499 1 209 8.9E-60 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 Pfam PF00550 Phosphopantetheine attachment site 217 277 2.1E-6 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 Pfam PF00857 Isochorismatase family 32 193 4.4E-31 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 PIRSF PIRSF001111 1 290 1.9E-125 T 11-10-2018 IPR016291 Isochorismatase GO:0008908 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 Gene3D G3DSA:3.40.50.850 1 209 7.1E-73 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 Gene3D G3DSA:1.10.1200.10 212 286 4.0E-19 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c42230 e01ebd591be1a27a0ed43031bf7b2eb6 295 SUPERFAMILY SSF47336 213 291 7.2E-9 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 Gene3D G3DSA:3.20.20.70 1 203 7.4E-74 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 5 202 6.1E-83 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 SUPERFAMILY SSF51569 3 201 1.15E-66 T 11-10-2018 VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c00550 1aaea2776103e0accacd0a72e97afa56 203 Pfam PF01081 KDPG and KHG aldolase 5 197 4.7E-73 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c24870 7c8ddeca9d463fe8f8fb6589fc760acb 190 SUPERFAMILY SSF55846 5 181 1.15E-66 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VV93_v1c24870 7c8ddeca9d463fe8f8fb6589fc760acb 190 SMART SM00644 18 169 2.6E-58 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VV93_v1c24870 7c8ddeca9d463fe8f8fb6589fc760acb 190 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 27 169 8.6E-30 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VV93_v1c24870 7c8ddeca9d463fe8f8fb6589fc760acb 190 Gene3D G3DSA:3.40.80.10 3 187 7.6E-56 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 VV93_v1c32610 1da395e340851cc804b64cfb4d489e49 118 Gene3D G3DSA:3.30.1370.150 59 118 1.5E-30 T 11-10-2018 VV93_v1c32610 1da395e340851cc804b64cfb4d489e49 118 Pfam PF10928 Protein of unknown function (DUF2810) 65 116 1.6E-31 T 11-10-2018 IPR021230 Protein of unknown function DUF2810 VV93_v1c30610 8b6214b99b8c40e27e2725a6b4e501f1 419 Pfam PF02264 LamB porin 68 419 8.3E-39 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c30610 8b6214b99b8c40e27e2725a6b4e501f1 419 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 94 413 1.0E-159 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c30610 8b6214b99b8c40e27e2725a6b4e501f1 419 SUPERFAMILY SSF56935 32 419 1.26E-82 T 11-10-2018 VV93_v1c30610 8b6214b99b8c40e27e2725a6b4e501f1 419 Gene3D G3DSA:2.40.170.10 31 419 9.4E-36 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VV93_v1c36140 d1b62086a3363b5423a0a00922826872 224 Pfam PF00072 Response regulator receiver domain 4 114 1.1E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36140 d1b62086a3363b5423a0a00922826872 224 PIRSF PIRSF006171 1 222 2.3E-65 T 11-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 VV93_v1c36140 d1b62086a3363b5423a0a00922826872 224 Gene3D G3DSA:3.40.50.12740 2 203 5.2E-25 T 11-10-2018 VV93_v1c36140 d1b62086a3363b5423a0a00922826872 224 SUPERFAMILY SSF52172 1 131 2.13E-28 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36140 d1b62086a3363b5423a0a00922826872 224 SMART SM00448 2 115 2.9E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 580 735 2.9E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 Gene3D G3DSA:1.10.287.950 440 770 3.0E-72 T 11-10-2018 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 SUPERFAMILY SSF58104 461 770 3.14E-72 T 11-10-2018 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 SMART SM00283 508 769 2.2E-72 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 SMART SM00304 440 493 4.7E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38360 f3275a4fab4cff7f6c5f8fb96e2d60aa 770 Pfam PF02743 Cache domain 37 397 8.2E-13 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 6 267 31.306 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 Pfam PF08544 GHMP kinases C terminal 206 259 3.8E-5 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 6 279 4.3E-97 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 Pfam PF00288 GHMP kinases N terminal domain 89 145 1.7E-7 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 Gene3D G3DSA:3.30.70.890 162 280 1.8E-28 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 SUPERFAMILY SSF54211 6 159 5.92E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 Gene3D G3DSA:3.30.230.10 1 160 6.5E-54 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 PIRSF PIRSF010376 4 280 7.2E-86 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 VV93_v1c08590 f1609be410c47e051bf0ffcb84589e75 290 SUPERFAMILY SSF55060 162 277 1.29E-34 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily VV93_v1c16050 625b79f9cb02b1c839edc552efe137c0 272 Gene3D G3DSA:3.40.190.10 106 218 1.8E-97 T 11-10-2018 VV93_v1c16050 625b79f9cb02b1c839edc552efe137c0 272 SUPERFAMILY SSF53850 29 257 1.24E-30 T 11-10-2018 VV93_v1c16050 625b79f9cb02b1c839edc552efe137c0 272 Gene3D G3DSA:3.40.190.10 31 255 1.8E-97 T 11-10-2018 VV93_v1c16050 625b79f9cb02b1c839edc552efe137c0 272 Pfam PF12849 PBP superfamily domain 31 247 1.0E-29 T 11-10-2018 IPR024370 PBP domain VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 Gene3D G3DSA:1.10.10.10 4 59 9.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 SUPERFAMILY SSF46785 7 68 9.7E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 SUPERFAMILY SSF54909 69 154 4.42E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 SMART SM00344 8 115 2.2E-40 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 Pfam PF01037 Lrp/AsnC ligand binding domain 75 145 1.4E-16 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 Gene3D G3DSA:3.30.70.920 60 142 2.0E-31 T 11-10-2018 VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 6.7E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.6E-8 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.6E-8 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c00610 696352469e86ac92a0062087aa898da7 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.6E-8 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 Pfam PF05235 CHAD domain 231 433 1.7E-8 T 11-10-2018 IPR007899 CHAD domain VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 SMART SM01118 2 203 3.6E-43 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 Gene3D G3DSA:1.40.20.10 214 492 5.4E-10 T 11-10-2018 IPR038186 CHAD domain superfamily VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 Gene3D G3DSA:2.40.320.10 1 198 2.8E-35 T 11-10-2018 VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 SMART SM00880 229 497 4.8E-29 T 11-10-2018 IPR007899 CHAD domain VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 SUPERFAMILY SSF55154 1 214 8.67E-50 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 VV93_v1c05180 57a2bd3ca7dcce7a5fe17873ab654b99 505 Pfam PF01928 CYTH domain 3 197 9.6E-34 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 4.2E-34 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 Gene3D G3DSA:3.40.220.10 1 159 7.3E-60 T 11-10-2018 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 Gene3D G3DSA:3.40.630.10 181 497 2.5E-141 T 11-10-2018 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 PRINTS PR00481 Cytosol aminopeptidase signature 345 365 4.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 PRINTS PR00481 Cytosol aminopeptidase signature 286 307 4.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 PRINTS PR00481 Cytosol aminopeptidase signature 323 344 4.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 PRINTS PR00481 Cytosol aminopeptidase signature 264 281 4.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 PRINTS PR00481 Cytosol aminopeptidase signature 373 388 4.8E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 497 40.835 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 349 356 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 SUPERFAMILY SSF53187 179 496 8.48E-126 T 11-10-2018 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 2.6E-124 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VV93_v1c26310 21c2105d5bab47f4688b358489b63c5e 502 SUPERFAMILY SSF52949 1 184 3.47E-52 T 11-10-2018 VV93_v1c17770 e48f47bb091f4ed1f51f7a35fc992ba4 158 Gene3D G3DSA:1.10.10.10 24 78 4.9E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c17770 e48f47bb091f4ed1f51f7a35fc992ba4 158 SUPERFAMILY SSF46689 16 132 1.52E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c17770 e48f47bb091f4ed1f51f7a35fc992ba4 158 Pfam PF13592 Winged helix-turn helix 99 156 1.2E-15 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c17770 e48f47bb091f4ed1f51f7a35fc992ba4 158 Pfam PF13551 Winged helix-turn helix 24 83 7.0E-14 T 11-10-2018 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 SUPERFAMILY SSF48256 4 428 5.89E-170 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 Pfam PF00285 Citrate synthase, C-terminal domain 49 411 1.9E-135 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 Gene3D G3DSA:1.10.580.10 57 411 1.0E-150 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 422 3.6E-239 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 Gene3D G3DSA:2.20.28.60 1 50 1.8E-26 T 11-10-2018 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 241 269 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 296 316 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 379 393 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 219 234 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 359 375 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PRINTS PR00143 Citrate synthase signature 165 178 2.7E-55 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 PIRSF PIRSF001369 38 429 1.0E-174 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 Gene3D G3DSA:1.10.230.10 268 376 1.0E-150 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain VV93_v1c09500 de01f0c2de3bf73eef77eeca0d63925c 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 VV93_v1c04250 1b38d68bae1637bd49347b5a647473aa 162 Pfam PF02470 MlaD protein 40 118 1.9E-19 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c04250 1b38d68bae1637bd49347b5a647473aa 162 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 152 1.1E-54 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Gene3D G3DSA:3.40.1190.10 81 311 6.8E-77 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 SUPERFAMILY SSF63418 1 96 2.22E-24 T 11-10-2018 IPR035911 MurE/MurF, N-terminal VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 448 4.7E-144 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Pfam PF08245 Mur ligase middle domain 105 293 6.0E-48 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Pfam PF01225 Mur ligase family, catalytic domain 27 80 8.0E-8 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 SUPERFAMILY SSF53623 100 311 2.75E-57 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 395 1.4E-12 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Gene3D G3DSA:3.40.1390.10 1 80 2.0E-25 T 11-10-2018 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 449 33.196 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 Gene3D G3DSA:3.90.190.20 313 453 3.6E-37 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05530 ebcdbb49a3900d4b8fe65820b763d359 453 SUPERFAMILY SSF53244 314 448 9.77E-35 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 Gene3D G3DSA:3.40.50.2300 17 139 7.0E-28 T 11-10-2018 VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 SMART SM00448 25 137 2.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 Gene3D G3DSA:3.40.1550.10 163 344 4.3E-23 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 Pfam PF00072 Response regulator receiver domain 27 133 6.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 SUPERFAMILY SSF52172 23 136 2.99E-28 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c16180 332433c8ee45d69b36cf3fe24507b3e7 345 SUPERFAMILY SSF103039 164 343 6.93E-29 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 PRINTS PR00095 Anthranilate synthase component I signature 305 318 2.9E-18 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 PRINTS PR00095 Anthranilate synthase component I signature 414 428 2.9E-18 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 PRINTS PR00095 Anthranilate synthase component I signature 319 332 2.9E-18 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 PRINTS PR00095 Anthranilate synthase component I signature 399 413 2.9E-18 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 SUPERFAMILY SSF56322 22 465 2.49E-145 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 Gene3D G3DSA:3.60.120.10 17 466 4.8E-175 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 122 458 6.0E-126 T 11-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 Pfam PF00425 chorismate binding enzyme 204 457 1.6E-97 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VV93_v1c18440 118c39b916381bec9ec59ae83c08a25b 466 Pfam PF04715 Anthranilate synthase component I, N terminal region 37 168 4.1E-27 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c24100 a761e31e221263306b0aeb7422cbb641 175 PIRSF PIRSF025550 1 174 8.6E-84 T 11-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT VV93_v1c24100 a761e31e221263306b0aeb7422cbb641 175 SUPERFAMILY SSF55718 44 139 8.24E-21 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c24100 a761e31e221263306b0aeb7422cbb641 175 Gene3D G3DSA:3.30.1050.10 27 139 3.2E-6 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c24100 a761e31e221263306b0aeb7422cbb641 175 Pfam PF02036 SCP-2 sterol transfer family 42 134 3.5E-19 T 11-10-2018 IPR003033 SCP2 sterol-binding domain VV93_v1c16440 ba737f7bee492114b27d137cd86216ee 166 Pfam PF10754 Protein of unknown function (DUF2569) 13 162 2.5E-28 T 11-10-2018 IPR019690 Protein of unknown function DUF2569 VV93_v1c40160 e998667ed008fc4acfd50203a5349678 208 Pfam PF13462 Thioredoxin 48 201 1.3E-8 T 11-10-2018 IPR012336 Thioredoxin-like fold VV93_v1c40160 e998667ed008fc4acfd50203a5349678 208 Gene3D G3DSA:3.40.30.10 23 207 1.6E-42 T 11-10-2018 VV93_v1c40160 e998667ed008fc4acfd50203a5349678 208 SUPERFAMILY SSF52833 26 206 4.27E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c40160 e998667ed008fc4acfd50203a5349678 208 ProSitePatterns PS00194 Thioredoxin family active site. 48 66 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c40160 e998667ed008fc4acfd50203a5349678 208 PIRSF PIRSF001488 5 208 5.1E-22 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 Pfam PF01145 SPFH domain / Band 7 family 26 195 3.6E-34 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 PRINTS PR00721 Stomatin signature 132 155 1.5E-28 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 PRINTS PR00721 Stomatin signature 175 196 1.5E-28 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 PRINTS PR00721 Stomatin signature 77 98 1.5E-28 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 PRINTS PR00721 Stomatin signature 112 129 1.5E-28 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 PRINTS PR00721 Stomatin signature 156 174 1.5E-28 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 Gene3D G3DSA:3.30.479.30 50 182 4.0E-43 T 11-10-2018 VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 ProSitePatterns PS01270 Band 7 protein family signature. 136 164 - T 11-10-2018 IPR018080 Band 7/stomatin-like, conserved site VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 SUPERFAMILY SSF117892 53 187 1.96E-41 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 SMART SM00244 22 180 7.3E-60 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c09120 5982b506f4c9e8b24dffc726cc15883d 307 Pfam PF16200 C-terminal region of band_7 242 301 4.6E-7 T 11-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 SUPERFAMILY SSF81296 781 882 4.2E-37 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 SUPERFAMILY SSF55545 208 331 4.06E-23 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Gene3D G3DSA:3.20.20.80 330 817 1.3E-165 T 11-10-2018 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 804 879 3.5E-27 T 11-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 SUPERFAMILY SSF49384 26 198 3.98E-63 T 11-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 211 329 4.0E-13 T 11-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 SMART SM01081 34 195 4.3E-90 T 11-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 SUPERFAMILY SSF51445 332 772 9.27E-144 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Gene3D G3DSA:2.60.40.290 25 167 3.5E-54 T 11-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 332 764 2.4E-108 T 11-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 355 376 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 728 744 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 292 312 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 746 763 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 432 449 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 326 343 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 526 539 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 499 517 7.3E-48 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Gene3D G3DSA:2.60.40.10 818 882 6.6E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Pfam PF03173 Putative carbohydrate binding domain 35 193 1.3E-60 T 11-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c08730 5cc2ac98dd4e72fdf032ea72a254f5ee 883 Gene3D G3DSA:3.30.379.10 204 329 1.4E-23 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 Gene3D G3DSA:3.10.450.140 5 105 1.8E-40 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 Hamap MF_00680 UPF0263 protein YciU [yciU]. 1 106 37.328 T 11-10-2018 IPR007376 dsDNA mimic, putative VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 PIRSF PIRSF004916 1 105 2.2E-51 T 11-10-2018 IPR007376 dsDNA mimic, putative VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 Pfam PF04269 Protein of unknown function, DUF440 5 105 2.6E-45 T 11-10-2018 IPR007376 dsDNA mimic, putative VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 18 104 1.0E-44 T 11-10-2018 IPR007376 dsDNA mimic, putative VV93_v1c11450 61310c0234bd3aa69a3636d5993f5edf 106 SUPERFAMILY SSF102816 3 105 5.89E-48 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 SUPERFAMILY SSF53067 154 340 4.66E-51 T 11-10-2018 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 Pfam PF06723 MreB/Mbl protein 11 338 1.6E-149 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 Gene3D G3DSA:3.30.420.40 14 331 3.6E-132 T 11-10-2018 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 2.4E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 2.4E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 2.4E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 2.4E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 2.4E-63 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 Gene3D G3DSA:3.30.420.40 158 321 3.6E-132 T 11-10-2018 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 Gene3D G3DSA:3.90.640.10 190 263 3.6E-132 T 11-10-2018 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 SUPERFAMILY SSF53067 9 152 2.71E-37 T 11-10-2018 VV93_v1c26570 4eb9e67d5037f0fc6054df2a45a62157 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 2.8E-166 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 VV93_v1c34660 d107280bbd178e4c35c831fc972cc467 492 Pfam PF07690 Major Facilitator Superfamily 10 423 2.0E-10 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c34660 d107280bbd178e4c35c831fc972cc467 492 Gene3D G3DSA:1.20.1250.20 7 475 2.2E-58 T 11-10-2018 VV93_v1c34660 d107280bbd178e4c35c831fc972cc467 492 SUPERFAMILY SSF103473 9 480 5.75E-18 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c12370 5c55e61b130a5ea73ad8fae09fded28d 198 SUPERFAMILY SSF89392 20 197 2.63E-51 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VV93_v1c12370 5c55e61b130a5ea73ad8fae09fded28d 198 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 7 197 2.8E-64 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VV93_v1c12370 5c55e61b130a5ea73ad8fae09fded28d 198 Gene3D G3DSA:2.50.20.10 16 197 3.3E-47 T 11-10-2018 VV93_v1c12370 5c55e61b130a5ea73ad8fae09fded28d 198 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 29 185 1.9E-55 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VV93_v1c12370 5c55e61b130a5ea73ad8fae09fded28d 198 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 5 196 31.24 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 SUPERFAMILY SSF52540 81 385 5.3E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 Gene3D G3DSA:1.10.8.630 9 118 8.7E-35 T 11-10-2018 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 Pfam PF00270 DEAD/DEAH box helicase 210 369 6.8E-15 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 SMART SM00490 498 595 6.5E-13 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 Pfam PF00271 Helicase conserved C-terminal domain 519 594 5.9E-8 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 SMART SM00487 200 401 8.3E-18 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 Gene3D G3DSA:3.40.50.300 192 385 2.1E-76 T 11-10-2018 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 Hamap MF_00983 Probable primosomal protein N' [priA]. 13 738 25.158 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 TIGRFAM TIGR00595 priA: primosomal protein N' 227 735 1.1E-190 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 VV93_v1c27400 ad2ce5ecd9d39697ff4a8cebe44df859 739 SUPERFAMILY SSF52540 467 638 1.15E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 2.9E-40 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 SUPERFAMILY SSF52402 209 479 1.39E-73 T 11-10-2018 VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 Gene3D G3DSA:3.40.50.620 194 514 1.3E-110 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 371 1.7E-115 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 SUPERFAMILY SSF56235 1 196 1.89E-57 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 Gene3D G3DSA:3.60.20.10 2 193 2.3E-70 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 Pfam PF00733 Asparagine synthase 212 511 2.8E-96 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 PIRSF PIRSF001589 1 371 3.0E-104 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VV93_v1c09310 abf799f7f0c4fd76266718f0ed700973 554 PIRSF PIRSF001589 362 507 3.7E-27 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 VV93_v1c14190 48e11a3b3d5897b71b9180e76fa9c592 293 Gene3D G3DSA:1.10.3720.10 51 292 8.7E-48 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14190 48e11a3b3d5897b71b9180e76fa9c592 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 288 5.1E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c14190 48e11a3b3d5897b71b9180e76fa9c592 293 SUPERFAMILY SSF161098 55 282 5.63E-42 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 1.7E-182 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 1.0E-199 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 Pfam PF03477 ATP cone domain 4 89 1.8E-21 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 Gene3D G3DSA:3.20.70.20 121 687 6.4E-233 T 11-10-2018 VV93_v1c38380 a33684a82fc3a3d109dfb41fa636ae85 706 SUPERFAMILY SSF51998 121 687 1.69E-193 T 11-10-2018 VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 Gene3D G3DSA:2.60.40.10 790 872 3.3E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 PIRSF PIRSF036597 1 1002 0.0 T 11-10-2018 IPR012045 Peptidase M6, unassigned InhA-related VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 148 433 2.5E-73 T 11-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 ProSitePatterns PS00018 EF-hand calcium-binding domain. 245 257 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 SUPERFAMILY SSF55486 283 356 7.33E-5 T 11-10-2018 VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 SUPERFAMILY SSF49299 779 877 3.92E-5 T 11-10-2018 IPR035986 PKD domain superfamily VV93_v1c10080 fd3db8554103dae4e6675d35af3811a8 1005 Pfam PF05547 Immune inhibitor A peptidase M6 172 377 6.0E-12 T 11-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 224 238 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 80 92 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 153 169 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 243 266 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PRINTS PR00996 Glutamate methyltransferase family signature 43 56 1.2E-43 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 Gene3D G3DSA:1.10.155.10 9 85 3.0E-23 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 Pfam PF03705 CheR methyltransferase, all-alpha domain 22 73 7.5E-14 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 SUPERFAMILY SSF53335 87 283 2.09E-52 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 SUPERFAMILY SSF47757 11 86 4.84E-19 T 11-10-2018 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 SMART SM00138 21 284 2.9E-80 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 PIRSF PIRSF000410 4 284 3.0E-96 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 Gene3D G3DSA:3.40.50.150 86 284 3.1E-62 T 11-10-2018 VV93_v1c45450 f3804e82af46685328ba71c3fdff0b06 284 Pfam PF01739 CheR methyltransferase, SAM binding domain 87 281 4.3E-58 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 188 0.0011 T 11-10-2018 VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 Gene3D G3DSA:3.40.50.720 1 245 1.6E-76 T 11-10-2018 VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 6.4E-59 T 11-10-2018 VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 245 6.9E-117 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 SUPERFAMILY SSF51735 2 245 1.36E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c41370 afb15242eb4674d732531d1e7f945315 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 Gene3D G3DSA:3.40.50.1820 1 270 3.5E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 4.9E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 4.9E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 4.9E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 4.9E-8 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 Pfam PF00561 alpha/beta hydrolase fold 23 253 5.5E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c05080 ebaa8e85a1101e788b91a8030289d1e3 272 SUPERFAMILY SSF53474 1 267 7.8E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 Gene3D G3DSA:3.40.50.10380 6 170 1.7E-66 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 PIRSF PIRSF000106 25 425 1.5E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 SUPERFAMILY SSF53223 20 171 4.03E-52 T 11-10-2018 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 SMART SM00919 173 409 2.2E-136 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 ProSitePatterns PS00331 Malic enzymes signature. 169 185 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 SUPERFAMILY SSF51735 173 421 3.72E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 Gene3D G3DSA:3.40.50.720 171 425 1.7E-81 T 11-10-2018 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 SMART SM01274 28 161 1.2E-75 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 Pfam PF03949 Malic enzyme, NAD binding domain 175 366 1.7E-24 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VV93_v1c27380 e7bdfcbde14910b865bd786ed4535de6 425 Pfam PF00390 Malic enzyme, N-terminal domain 30 125 4.1E-21 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 227 239 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 SUPERFAMILY SSF56112 78 325 3.64E-53 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 Gene3D G3DSA:3.30.200.20 38 188 2.2E-25 T 11-10-2018 VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 SMART SM00220 100 399 7.5E-36 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 Pfam PF00069 Protein kinase domain 100 318 7.7E-38 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 VV93_v1c39420 000d93ce1a5a9203eec9530502de1a3c 722 Gene3D G3DSA:1.10.510.10 189 378 2.7E-31 T 11-10-2018 VV93_v1c31930 5bf2eb880d1bd5d4aeddafc64a7aa2a0 403 SUPERFAMILY SSF103473 13 401 3.27E-46 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c31930 5bf2eb880d1bd5d4aeddafc64a7aa2a0 403 Gene3D G3DSA:1.20.1250.20 9 399 2.7E-37 T 11-10-2018 VV93_v1c31930 5bf2eb880d1bd5d4aeddafc64a7aa2a0 403 Pfam PF07690 Major Facilitator Superfamily 20 361 3.8E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Gene3D G3DSA:3.10.560.10 92 374 2.1E-119 T 11-10-2018 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Gene3D G3DSA:1.20.5.70 377 410 7.9E-20 T 11-10-2018 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Pfam PF10531 SLBB domain 289 335 7.6E-6 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Pfam PF10531 SLBB domain 206 254 3.6E-9 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Gene3D G3DSA:3.30.1950.10 121 202 2.1E-119 T 11-10-2018 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Pfam PF02563 Polysaccharide biosynthesis/export protein 114 198 3.1E-26 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VV93_v1c03200 39b700b99fa7ad44c834e87c3fb39f1c 410 Gene3D G3DSA:3.10.560.10 99 287 2.1E-119 T 11-10-2018 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 Gene3D G3DSA:3.30.60.20 141 186 1.2E-7 T 11-10-2018 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 SUPERFAMILY SSF52540 1 138 1.01E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 SUPERFAMILY SSF57716 139 187 7.6E-17 T 11-10-2018 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 Hamap MF_00124 Thymidine kinase [tdk]. 1 186 32.586 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 PIRSF PIRSF035805 1 189 2.9E-56 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 Pfam PF00265 Thymidine kinase 2 183 1.3E-58 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 170 183 - T 11-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 VV93_v1c12760 65576001c26f66de4ca908b41f4a4f6a 189 Gene3D G3DSA:3.40.50.300 1 137 1.1E-23 T 11-10-2018 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 Pfam PF01047 MarR family 33 88 1.3E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 SMART SM00347 23 124 3.5E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 SUPERFAMILY SSF46785 5 135 7.93E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 8.4E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 8.4E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 8.4E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 8.4E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24150 72c7607b7699dc0a0c73313a1c98d7d8 137 Gene3D G3DSA:1.10.10.10 1 136 1.8E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c04900 dcb60254144882ef2a1d28382c8023a6 155 Gene3D G3DSA:3.40.140.10 34 155 2.3E-44 T 11-10-2018 VV93_v1c04900 dcb60254144882ef2a1d28382c8023a6 155 SUPERFAMILY SSF102712 51 125 7.32E-6 T 11-10-2018 VV93_v1c04900 dcb60254144882ef2a1d28382c8023a6 155 TIGRFAM TIGR00608 radc: DNA repair protein RadC 26 155 1.5E-46 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 VV93_v1c04900 dcb60254144882ef2a1d28382c8023a6 155 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 105 110 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VV93_v1c04900 dcb60254144882ef2a1d28382c8023a6 155 Pfam PF04002 RadC-like JAB domain 37 154 2.1E-45 T 11-10-2018 IPR025657 RadC-like JAB domain VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 Pfam PF00571 CBS domain 73 126 1.3E-11 T 11-10-2018 IPR000644 CBS domain VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 Pfam PF00571 CBS domain 6 61 5.2E-6 T 11-10-2018 IPR000644 CBS domain VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 SUPERFAMILY SSF54631 2 126 3.79E-30 T 11-10-2018 VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 Gene3D G3DSA:3.10.580.10 1 135 1.5E-28 T 11-10-2018 VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 SMART SM00116 80 127 5.2E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c20870 d1d08c5b9524ed1148f65652d1a0d610 138 SMART SM00116 13 61 1.4 T 11-10-2018 IPR000644 CBS domain VV93_v1c22630 02798cc8dbc833a415a95e541489006b 380 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 377 8.5E-145 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VV93_v1c22630 02798cc8dbc833a415a95e541489006b 380 Pfam PF02684 Lipid-A-disaccharide synthetase 8 374 1.0E-129 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VV93_v1c22630 02798cc8dbc833a415a95e541489006b 380 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 379 41.843 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 VV93_v1c22630 02798cc8dbc833a415a95e541489006b 380 SUPERFAMILY SSF53756 7 380 7.99E-29 T 11-10-2018 VV93_v1c35000 c91480c6f85c911ecaae340b171ba1c1 131 Gene3D G3DSA:3.10.180.10 1 128 8.2E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c35000 c91480c6f85c911ecaae340b171ba1c1 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 123 1.4E-15 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c35000 c91480c6f85c911ecaae340b171ba1c1 131 SUPERFAMILY SSF54593 3 126 6.05E-28 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c01440 c91480c6f85c911ecaae340b171ba1c1 131 Gene3D G3DSA:3.10.180.10 1 128 8.2E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c01440 c91480c6f85c911ecaae340b171ba1c1 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 123 1.4E-15 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c01440 c91480c6f85c911ecaae340b171ba1c1 131 SUPERFAMILY SSF54593 3 126 6.05E-28 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 4 885 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 PIRSF PIRSF000156 1 886 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 Gene3D G3DSA:3.40.50.970 472 705 4.1E-111 T 11-10-2018 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 SUPERFAMILY SSF52518 475 700 1.65E-97 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 104 298 3.0E-10 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 360 426 1.9E-4 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 Gene3D G3DSA:3.40.50.970 55 471 5.6E-133 T 11-10-2018 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 SUPERFAMILY SSF52518 56 469 6.53E-140 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 Gene3D G3DSA:3.40.50.920 706 886 1.2E-69 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c24850 7e9b988d4e412851309f7e2813457dd8 886 SUPERFAMILY SSF52922 701 885 1.04E-57 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 VV93_v1c28690 9673fe3c17746755f97c9f6a5cbd6ab0 197 SMART SM00986 27 183 1.5E-31 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c28690 9673fe3c17746755f97c9f6a5cbd6ab0 197 SUPERFAMILY SSF52141 3 190 1.21E-55 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c28690 9673fe3c17746755f97c9f6a5cbd6ab0 197 Gene3D G3DSA:3.40.470.10 1 193 6.9E-72 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c28690 9673fe3c17746755f97c9f6a5cbd6ab0 197 SMART SM00987 27 183 1.5E-31 T 11-10-2018 VV93_v1c28690 9673fe3c17746755f97c9f6a5cbd6ab0 197 Pfam PF03167 Uracil DNA glycosylase superfamily 31 179 1.2E-24 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 Gene3D G3DSA:3.30.420.140 1 138 2.4E-39 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 SMART SM00732 3 104 5.9E-35 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 139 24.469 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 136 3.5E-49 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 SUPERFAMILY SSF53098 3 137 2.73E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c25770 adadd1206d6d77de51227a5b9e2bb3cf 140 Pfam PF03652 Holliday junction resolvase 4 136 4.3E-36 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 210 1.4E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 SMART SM00421 153 210 9.4E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 SUPERFAMILY SSF46894 149 212 2.52E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 5.8E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 5.8E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 5.8E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 Gene3D G3DSA:3.40.50.2300 8 142 2.0E-28 T 11-10-2018 VV93_v1c33700 a7ac53ccba56a37084a672dfd1598820 214 Gene3D G3DSA:1.10.10.10 145 214 1.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19270 4d0b9d06b267c832ca3a37b3b401811e 156 Gene3D G3DSA:3.30.460.10 4 156 1.2E-21 T 11-10-2018 VV93_v1c19270 4d0b9d06b267c832ca3a37b3b401811e 156 Pfam PF04229 GrpB protein 7 155 2.6E-24 T 11-10-2018 IPR007344 GrpB/Dephospho-CoA kinase VV93_v1c19270 4d0b9d06b267c832ca3a37b3b401811e 156 SUPERFAMILY SSF81301 7 155 1.57E-32 T 11-10-2018 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 608 3.9E-196 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 SUPERFAMILY SSF52096 39 284 8.7E-29 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 Gene3D G3DSA:3.40.1750.10 186 497 2.5E-161 T 11-10-2018 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 Gene3D G3DSA:3.90.226.10 315 539 2.5E-161 T 11-10-2018 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 SUPERFAMILY SSF52096 324 529 2.03E-40 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 PIRSF PIRSF001217 8 616 2.9E-235 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 327 539 9.9E-50 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 Pfam PF01343 Peptidase family S49 391 541 3.4E-44 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 Pfam PF01343 Peptidase family S49 138 295 2.7E-30 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VV93_v1c10700 93576ba7c60cae9fd9cf134edb8752f0 616 Gene3D G3DSA:3.90.226.10 94 314 2.5E-161 T 11-10-2018 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 389 542 4.7E-42 T 11-10-2018 IPR001162 UvrC family homology region VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 3.0E-12 T 11-10-2018 IPR000305 GIY-YIG endonuclease VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 9 589 9.9E-210 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SUPERFAMILY SSF82771 16 100 3.27E-23 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SMART SM00278 588 607 340.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SMART SM00278 556 575 0.24 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 28.161 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Gene3D G3DSA:3.40.1440.10 7 102 3.7E-31 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SMART SM00465 17 98 1.1E-22 T 11-10-2018 IPR000305 GIY-YIG endonuclease VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Pfam PF14520 Helix-hairpin-helix domain 558 609 3.5E-9 T 11-10-2018 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SUPERFAMILY SSF47781 521 609 2.67E-19 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 SUPERFAMILY SSF46600 190 243 1.23E-12 T 11-10-2018 IPR036876 UVR domain superfamily VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Pfam PF02151 UvrB/uvrC motif 205 238 3.8E-8 T 11-10-2018 IPR001943 UVR domain GO:0005515 VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Gene3D G3DSA:3.30.420.340 380 552 4.0E-44 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily VV93_v1c11510 4255a462befcb2a6390842fee14ecde7 610 Gene3D G3DSA:1.10.150.20 555 610 2.3E-24 T 11-10-2018 VV93_v1c18410 6980c1a7a5f48fb812f549879fe0cc7e 458 PIRSF PIRSF019381 1 458 4.0E-198 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VV93_v1c18410 6980c1a7a5f48fb812f549879fe0cc7e 458 Pfam PF04317 YcjX-like family, DUF463 20 457 4.0E-186 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 451 8.4E-88 T 11-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SUPERFAMILY SSF54631 138 278 1.15E-25 T 11-10-2018 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Gene3D G3DSA:3.10.580.10 135 262 5.0E-36 T 11-10-2018 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Gene3D G3DSA:1.10.357.20 277 451 6.3E-45 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SMART SM00924 36 139 2.8E-36 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Pfam PF00571 CBS domain 217 257 9.1E-4 T 11-10-2018 IPR000644 CBS domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Pfam PF00571 CBS domain 140 189 0.0014 T 11-10-2018 IPR000644 CBS domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Pfam PF03448 MgtE intracellular N domain 36 137 5.5E-26 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SUPERFAMILY SSF158791 12 136 1.18E-29 T 11-10-2018 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SMART SM00116 146 199 73.0 T 11-10-2018 IPR000644 CBS domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SMART SM00116 212 258 0.029 T 11-10-2018 IPR000644 CBS domain VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Pfam PF01769 Divalent cation transporter 323 444 1.1E-22 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 SUPERFAMILY SSF161093 280 450 2.48E-43 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VV93_v1c04110 da4af75c0d4f5a2533f6810c14479924 451 Gene3D G3DSA:1.25.60.10 8 134 5.3E-20 T 11-10-2018 IPR038076 MgtE, N-terminal domain superfamily VV93_v1c28990 e918b281aec85a3f6376c4d5e308fd02 90 SUPERFAMILY SSF54292 1 87 4.19E-24 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c28990 e918b281aec85a3f6376c4d5e308fd02 90 Gene3D G3DSA:3.10.20.30 3 90 6.5E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c28990 e918b281aec85a3f6376c4d5e308fd02 90 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 78 2.4E-13 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c28990 e918b281aec85a3f6376c4d5e308fd02 90 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 Pfam PF02153 Prephenate dehydrogenase 138 344 4.7E-32 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 PIRSF PIRSF001499 1 374 3.2E-181 T 11-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 SUPERFAMILY SSF48600 4 88 1.03E-23 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 7.9E-42 T 11-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 SUPERFAMILY SSF51735 91 237 6.3E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 Gene3D G3DSA:1.10.3660.10 248 373 1.4E-48 T 11-10-2018 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 Gene3D G3DSA:1.20.59.10 1 80 4.9E-17 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 Gene3D G3DSA:3.40.50.720 81 247 1.0E-42 T 11-10-2018 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 SMART SM00830 9 89 1.4E-28 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 SUPERFAMILY SSF48179 242 366 2.04E-39 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c06390 d95121344b427b1ea842e0af0605aa9e 375 Pfam PF01817 Chorismate mutase type II 9 87 6.7E-21 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 SUPERFAMILY SSF55031 181 291 5.08E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 52.111 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 SUPERFAMILY SSF53187 6 376 2.24E-66 T 11-10-2018 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 Gene3D G3DSA:3.40.630.10 9 364 4.6E-127 T 11-10-2018 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 375 7.6E-180 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 Pfam PF01546 Peptidase family M20/M25/M40 64 374 7.0E-46 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 99 137 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 Pfam PF07687 Peptidase dimerisation domain 177 284 1.1E-21 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c22020 5209ff9658cf86d355d7336e0a37ba23 377 Gene3D G3DSA:3.30.70.360 181 294 4.6E-127 T 11-10-2018 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Gene3D G3DSA:2.60.40.1840 443 544 7.6E-36 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Pfam PF01433 Peptidase family M1 domain 208 435 9.8E-58 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Gene3D G3DSA:1.25.50.10 545 867 1.6E-111 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Gene3D G3DSA:1.10.1740.60 194 278 3.7E-39 T 11-10-2018 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 866 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 312 324 4.5E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 125 140 4.5E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 175 190 4.5E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 293 308 4.5E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 257 267 4.5E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 547 867 1.1E-109 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 SUPERFAMILY SSF63737 2 192 8.76E-48 T 11-10-2018 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Gene3D G3DSA:2.60.40.1730 15 193 1.4E-70 T 11-10-2018 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 SUPERFAMILY SSF55486 203 449 9.08E-74 T 11-10-2018 VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 443 544 1.3E-33 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold VV93_v1c15240 9ef8e54245bcab5681db3f8cbc35e416 869 Gene3D G3DSA:1.10.390.10 279 442 4.7E-65 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 SUPERFAMILY SSF111369 186 265 5.49E-12 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 SUPERFAMILY SSF111369 52 122 1.44E-7 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Gene3D G3DSA:2.40.50.100 54 86 7.7E-10 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Pfam PF13437 HlyD family secretion protein 209 327 6.3E-15 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Gene3D G3DSA:2.40.30.170 224 339 1.9E-36 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Pfam PF13533 Biotin-lipoyl like 55 99 2.5E-10 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Gene3D G3DSA:1.10.287.470 87 112 7.7E-10 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 Gene3D G3DSA:1.10.287.470 113 179 1.0E-7 T 11-10-2018 VV93_v1c36800 1d932a43e351ee2eb7f02661ae6837fd 341 SUPERFAMILY SSF111369 119 174 1.05E-5 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 PRINTS PR00419 Adrenodoxin reductase family signature 401 414 2.1E-8 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 PRINTS PR00419 Adrenodoxin reductase family signature 378 400 2.1E-8 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 SUPERFAMILY SSF51395 4 365 6.02E-108 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 629 4.5E-26 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 Gene3D G3DSA:3.20.20.70 4 370 2.1E-120 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 SUPERFAMILY SSF51905 373 646 9.21E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 Gene3D G3DSA:3.40.50.720 377 664 6.4E-105 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 SUPERFAMILY SSF51971 335 519 1.41E-38 T 11-10-2018 VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 Gene3D G3DSA:3.50.50.60 471 623 6.4E-105 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c10710 d16112c5e47ddf527e71e514ebdc5665 670 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 330 3.3E-82 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VV93_v1c36400 d0f74d81c9482ca8e708cd40dfe32395 734 SUPERFAMILY SSF48695 282 719 1.16E-25 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c36400 d0f74d81c9482ca8e708cd40dfe32395 734 TIGRFAM TIGR03507 decahem_SO1788: decaheme c-type cytochrome, OmcA/MtrC family 53 728 1.3E-163 T 11-10-2018 IPR020014 Decahaem cytochrome, c-type, OmcA/MtrC VV93_v1c36400 d0f74d81c9482ca8e708cd40dfe32395 734 Gene3D G3DSA:3.40.970.50 322 368 2.2E-5 T 11-10-2018 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 337 6.6E-87 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 247 3.3E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 Gene3D G3DSA:2.40.420.20 35 334 2.1E-77 T 11-10-2018 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 Gene3D G3DSA:2.40.30.170 41 267 2.1E-77 T 11-10-2018 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 Gene3D G3DSA:1.10.287.470 90 149 2.1E-77 T 11-10-2018 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 SUPERFAMILY SSF111369 47 264 9.68E-32 T 11-10-2018 VV93_v1c13060 544633fdddfd6fbc7e0ef3acf7047dee 343 Gene3D G3DSA:2.40.50.100 56 188 2.1E-77 T 11-10-2018 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 Pfam PF00089 Trypsin 29 327 3.7E-27 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 SMART SM00020 20 327 5.6E-25 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 272 284 3.3E-14 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 47 62 3.3E-14 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 139 153 3.3E-14 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 SUPERFAMILY SSF50494 10 332 1.31E-41 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 Gene3D G3DSA:2.40.10.10 31 164 5.3E-19 T 11-10-2018 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 391 412 9.5E-5 T 11-10-2018 IPR020008 GlyGly-CTERM domain VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 Gene3D G3DSA:2.40.10.10 165 329 3.3E-20 T 11-10-2018 VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 273 284 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VV93_v1c14240 8b83348b9e7b8af1fe37a5976c790661 415 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 57 62 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VV93_v1c42040 73b09f497ce8a84113dbabd0d5b58862 222 Gene3D G3DSA:1.10.3720.10 3 217 9.9E-42 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c42040 73b09f497ce8a84113dbabd0d5b58862 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 112 3.7E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c42040 73b09f497ce8a84113dbabd0d5b58862 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 215 1.8E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c42040 73b09f497ce8a84113dbabd0d5b58862 222 SUPERFAMILY SSF161098 9 202 9.03E-32 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 Gene3D G3DSA:3.40.640.10 58 327 7.2E-170 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 10 418 3.6E-178 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 Gene3D G3DSA:3.90.1150.10 7 412 7.2E-170 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 Pfam PF00202 Aminotransferase class-III 24 418 5.9E-130 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 421 48.886 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 PIRSF PIRSF000521 22 421 9.1E-39 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 SUPERFAMILY SSF53383 4 420 4.7E-135 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c12400 0657648ef51be8598148ce9ed8ac7078 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 Pfam PF03471 Transporter associated domain 344 417 4.7E-17 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 SMART SM01091 342 420 1.1E-22 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 Gene3D G3DSA:3.10.580.10 201 330 3.9E-42 T 11-10-2018 VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 SUPERFAMILY SSF56176 340 421 1.47E-20 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 SUPERFAMILY SSF54631 192 329 7.58E-25 T 11-10-2018 VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 Pfam PF00571 CBS domain 278 326 1.1E-5 T 11-10-2018 IPR000644 CBS domain VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 Gene3D G3DSA:3.30.465.10 340 418 3.3E-27 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VV93_v1c25020 75c99fa2985c006dea84a5ec186fc5a9 425 Pfam PF01595 Domain of unknown function DUF21 13 181 4.1E-49 T 11-10-2018 IPR002550 CNNM, transmembrane domain VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SMART SM00028 119 152 1.7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SMART SM00028 214 247 4.3E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SMART SM00028 278 311 1.6E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SMART SM00028 180 213 0.05 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SMART SM00028 85 118 6.1E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 SUPERFAMILY SSF48452 53 323 4.93E-30 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Gene3D G3DSA:1.25.40.10 43 154 8.0E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Gene3D G3DSA:1.25.40.10 165 339 1.2E-29 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Pfam PF13181 Tetratricopeptide repeat 279 306 0.018 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Pfam PF13432 Tetratricopeptide repeat 178 212 0.011 T 11-10-2018 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Pfam PF13432 Tetratricopeptide repeat 89 146 3.2E-6 T 11-10-2018 VV93_v1c23680 a3617105cefc09fc83b64b7e8a73093d 344 Pfam PF07719 Tetratricopeptide repeat 217 247 9.5E-8 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 SUPERFAMILY SSF53901 215 412 5.38E-67 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 4.4E-64 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 Gene3D G3DSA:3.40.47.10 1 255 4.7E-93 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.5E-194 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 Gene3D G3DSA:3.40.47.10 261 413 1.7E-50 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 370 8.7E-36 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 SUPERFAMILY SSF53901 3 252 2.25E-80 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 PIRSF PIRSF000447 1 413 2.2E-204 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site VV93_v1c11940 33ca83cbfd50585697bf8eec762a4704 413 SMART SM00825 Beta-ketoacyl synthase 6 413 9.5E-15 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 34 6.1E-14 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 ProSitePatterns PS00938 Initiation factor 3 signature. 16 29 - T 11-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 SUPERFAMILY SSF54364 1 36 2.48E-13 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 SUPERFAMILY SSF55200 41 129 2.49E-33 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 Gene3D G3DSA:3.30.110.10 34 129 5.2E-38 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 41 127 7.5E-36 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 Gene3D G3DSA:3.10.20.80 1 33 2.6E-14 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c17040 bfa544b62b39b03de651aaa7eb8895b6 129 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 129 1.4E-57 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 VV93_v1c08470 994ad6f2bfcd9f524ba7f9dd97ddd165 176 Pfam PF04390 Lipopolysaccharide-assembly 41 159 2.5E-11 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 VV93_v1c08470 994ad6f2bfcd9f524ba7f9dd97ddd165 176 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 7 164 24.436 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 VV93_v1c08470 994ad6f2bfcd9f524ba7f9dd97ddd165 176 Gene3D G3DSA:3.30.160.150 18 167 1.6E-49 T 11-10-2018 VV93_v1c15390 7b5a41f7516701fb743e9757a40cf9e5 405 Gene3D G3DSA:1.10.3210.10 126 300 1.4E-8 T 11-10-2018 VV93_v1c15390 7b5a41f7516701fb743e9757a40cf9e5 405 Pfam PF08668 HDOD domain 137 280 1.3E-5 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c15390 7b5a41f7516701fb743e9757a40cf9e5 405 SUPERFAMILY SSF109604 132 278 2.86E-8 T 11-10-2018 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 2 190 2.8E-102 T 11-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 Gene3D G3DSA:1.10.1740.10 1 121 3.6E-45 T 11-10-2018 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 185 2.7E-33 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 SUPERFAMILY SSF88946 2 107 4.24E-32 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 Gene3D G3DSA:1.10.10.10 122 192 1.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 SUPERFAMILY SSF88659 124 185 1.61E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 Pfam PF04542 Sigma-70 region 2 25 92 5.9E-18 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c25460 2555b39087b717e6c11310b006ead891 192 Pfam PF08281 Sigma-70, region 4 134 181 3.6E-18 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.315 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 2.0E-42 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 125 1.1E-33 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 SUPERFAMILY SSF56214 3 125 1.83E-31 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 88 2.0E-40 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 121 6.8E-23 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c25360 4eb351af8aa8ac1ea4c80f5cfca09ad7 126 Gene3D G3DSA:3.90.470.20 1 126 1.3E-40 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c17620 7d2eda0f4e91801d0762c9d80d1dd111 465 SUPERFAMILY SSF53300 118 458 1.6E-17 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c17620 7d2eda0f4e91801d0762c9d80d1dd111 465 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 6 48 8.4E-7 T 11-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal VV93_v1c17620 7d2eda0f4e91801d0762c9d80d1dd111 465 Gene3D G3DSA:3.40.50.410 304 462 9.4E-10 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c17620 7d2eda0f4e91801d0762c9d80d1dd111 465 Pfam PF00092 von Willebrand factor type A domain 129 193 1.1E-5 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c17620 7d2eda0f4e91801d0762c9d80d1dd111 465 Gene3D G3DSA:3.40.50.410 113 217 7.0E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c40530 af625a7dff4dc28fd60f5a34c504b712 202 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 28 172 7.2E-48 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40530 af625a7dff4dc28fd60f5a34c504b712 202 PIRSF PIRSF005413 2 192 2.7E-68 T 11-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40530 af625a7dff4dc28fd60f5a34c504b712 202 Gene3D G3DSA:2.60.370.10 56 187 7.9E-42 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c40530 af625a7dff4dc28fd60f5a34c504b712 202 SUPERFAMILY SSF110111 56 173 4.84E-45 T 11-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 252 44.968 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 Pfam PF00753 Metallo-beta-lactamase superfamily 14 166 7.5E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 PIRSF PIRSF005457 1 252 1.7E-97 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 SMART SM00849 12 166 5.7E-34 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 252 2.2E-103 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 Gene3D G3DSA:3.60.15.10 1 252 9.2E-93 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 252 2.8E-26 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c22530 fb305dbff1f60079b3d6926e4e1d084e 252 SUPERFAMILY SSF56281 2 252 2.88E-70 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c27160 96ec137c85bd243e157715fd9022ae15 498 SUPERFAMILY SSF52540 15 224 6.64E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27160 96ec137c85bd243e157715fd9022ae15 498 Pfam PF13401 AAA domain 29 130 1.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c27160 96ec137c85bd243e157715fd9022ae15 498 Gene3D G3DSA:3.40.50.300 11 161 5.2E-7 T 11-10-2018 VV93_v1c27160 96ec137c85bd243e157715fd9022ae15 498 Gene3D G3DSA:3.30.70.1070 400 495 2.6E-27 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c27160 96ec137c85bd243e157715fd9022ae15 498 Pfam PF05036 Sporulation related domain 411 484 3.6E-8 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 Gene3D G3DSA:3.40.190.10 91 281 6.7E-65 T 11-10-2018 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 Pfam PF03466 LysR substrate binding domain 89 292 3.9E-43 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 Gene3D G3DSA:3.40.190.10 164 267 6.7E-65 T 11-10-2018 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 Gene3D G3DSA:1.10.10.10 1 84 5.9E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.6E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 SUPERFAMILY SSF46785 1 86 3.98E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c27250 3b6184f8f61fccdd64a730718f75bd92 299 SUPERFAMILY SSF53850 89 293 2.27E-38 T 11-10-2018 VV93_v1c37050 f08d2b917476eb4e7bb2507402ef4894 322 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 29 273 7.4E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c37050 f08d2b917476eb4e7bb2507402ef4894 322 Gene3D G3DSA:3.60.10.10 1 318 9.7E-32 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c37050 f08d2b917476eb4e7bb2507402ef4894 322 SUPERFAMILY SSF56219 2 317 5.23E-35 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c18780 d701e32bcf642b98f0672ec43506b221 181 Pfam PF05951 Bacterial protein of unknown function (DUF882) 33 181 2.9E-72 T 11-10-2018 IPR010275 Protein of unknown function DUF882 VV93_v1c18780 d701e32bcf642b98f0672ec43506b221 181 SUPERFAMILY SSF55166 64 181 1.78E-34 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c18780 d701e32bcf642b98f0672ec43506b221 181 Gene3D G3DSA:3.30.1380.10 64 181 1.6E-11 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Pfam PF14501 GHKL domain 413 516 3.4E-15 T 11-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Gene3D G3DSA:3.30.565.10 365 517 1.0E-22 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 SUPERFAMILY SSF103190 36 161 1.06E-30 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 316 357 2.4E-7 T 11-10-2018 IPR039506 SpoOB, alpha-helical domain VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 SUPERFAMILY SSF55890 318 386 2.62E-9 T 11-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Gene3D G3DSA:3.30.450.20 29 161 1.6E-35 T 11-10-2018 VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Gene3D G3DSA:3.30.450.20 197 306 5.2E-9 T 11-10-2018 VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 SMART SM00387 412 519 5.9E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 SUPERFAMILY SSF55874 382 518 1.44E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 SUPERFAMILY SSF55785 204 295 4.57E-5 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c36130 f6da77a082e753c6a274f6147481ba7b 519 Pfam PF17203 Single cache domain 3 33 157 4.0E-19 T 11-10-2018 IPR033463 Single cache domain 3 VV93_v1c11010 940cfe7c406c4a690264c00f4b31e7de 441 PRINTS PR00173 Glutamate-aspartate symporter signature 374 393 2.6E-6 T 11-10-2018 VV93_v1c11010 940cfe7c406c4a690264c00f4b31e7de 441 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.6E-6 T 11-10-2018 VV93_v1c11010 940cfe7c406c4a690264c00f4b31e7de 441 Pfam PF03553 Na+/H+ antiporter family 150 435 4.6E-77 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VV93_v1c11010 940cfe7c406c4a690264c00f4b31e7de 441 Pfam PF13726 Na+-H+ antiporter family 2 88 1.3E-35 T 11-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 SUPERFAMILY SSF58104 311 620 4.97E-68 T 11-10-2018 VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 SMART SM00304 289 343 4.9E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 Pfam PF00672 HAMP domain 289 339 3.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 432 586 4.3E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 SMART SM00283 358 619 2.1E-62 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c15990 f404961f78cda82a6277ad3e78a540eb 620 Gene3D G3DSA:1.10.287.950 289 620 2.2E-63 T 11-10-2018 VV93_v1c09240 251c2c30c1f937b191e75eff0f22dc52 290 SMART SM00862 29 107 5.1E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c09240 251c2c30c1f937b191e75eff0f22dc52 290 Gene3D G3DSA:1.10.10.10 5 107 1.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09240 251c2c30c1f937b191e75eff0f22dc52 290 SUPERFAMILY SSF46894 7 109 2.64E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c09240 251c2c30c1f937b191e75eff0f22dc52 290 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 107 1.8E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 SUPERFAMILY SSF88697 2 70 8.45E-17 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 Gene3D G3DSA:2.40.240.20 1 70 8.7E-22 T 11-10-2018 VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 2.2E-84 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 SUPERFAMILY SSF75217 75 242 5.23E-52 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 Pfam PF04452 RNA methyltransferase 19 236 1.2E-74 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 Gene3D G3DSA:3.40.1280.10 74 243 7.8E-66 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c25740 0bec567528fa752e096b88dceb65a1a0 243 PIRSF PIRSF015601 2 242 2.4E-55 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 VV93_v1c18150 5c67e857ee0b14b644a2e2ad5aa7f172 380 Gene3D G3DSA:3.30.450.40 1 157 6.6E-10 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c18150 5c67e857ee0b14b644a2e2ad5aa7f172 380 SUPERFAMILY SSF109604 183 359 9.42E-23 T 11-10-2018 VV93_v1c18150 5c67e857ee0b14b644a2e2ad5aa7f172 380 Pfam PF13487 HD domain 241 310 1.1E-13 T 11-10-2018 VV93_v1c18150 5c67e857ee0b14b644a2e2ad5aa7f172 380 Gene3D G3DSA:1.10.3210.10 161 374 2.0E-48 T 11-10-2018 VV93_v1c18150 5c67e857ee0b14b644a2e2ad5aa7f172 380 SUPERFAMILY SSF55781 36 152 4.14E-10 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 526 538 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 269 282 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 70 83 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 35 50 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 113 127 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 737 753 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 488 504 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 506 523 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR00418 DNA topoisomerase II family signature 421 435 7.5E-71 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 SMART SM00433 35 798 2.9E-273 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Gene3D G3DSA:3.40.50.670 706 804 4.5E-27 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Pfam PF00204 DNA gyrase B 221 391 2.8E-61 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 SUPERFAMILY SSF56719 395 796 7.32E-88 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 ProSitePatterns PS00177 DNA topoisomerase II signature. 423 431 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Pfam PF01751 Toprim domain 420 532 8.5E-19 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Gene3D G3DSA:3.30.565.10 1 220 2.2E-94 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Gene3D G3DSA:3.10.20.690 593 684 5.5E-35 T 11-10-2018 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 805 108.816 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 SUPERFAMILY SSF55874 4 213 3.8E-75 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 SUPERFAMILY SSF54211 221 393 4.93E-59 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 174 7.8E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Gene3D G3DSA:3.30.230.10 221 393 1.1E-74 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Gene3D G3DSA:3.40.50.670 399 571 3.6E-75 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 805 0.0 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 313 329 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 758 770 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 195 208 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 5 15 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 180 195 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 220 242 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 471 480 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 361 375 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 375 395 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 243 261 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 PRINTS PR01159 DNA gyrase subunit B signature 774 790 8.1E-86 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 SMART SM00387 31 175 1.2E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c00040 52a5e980a6da878d239f4e1fb54a3124 805 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 794 4.6E-30 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c08600 1bd461259a588c075a1b65cea7a4307f 202 SUPERFAMILY SSF89392 18 201 2.39E-49 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VV93_v1c08600 1bd461259a588c075a1b65cea7a4307f 202 Gene3D G3DSA:2.50.20.10 23 202 1.1E-53 T 11-10-2018 VV93_v1c08600 1bd461259a588c075a1b65cea7a4307f 202 Pfam PF03550 Outer membrane lipoprotein LolB 42 199 1.1E-44 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VV93_v1c08600 1bd461259a588c075a1b65cea7a4307f 202 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 13 200 2.6E-39 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VV93_v1c08600 1bd461259a588c075a1b65cea7a4307f 202 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 2 201 27.233 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 VV93_v1c36720 fe4be49a505ecfc5c345751a63200e25 261 SUPERFAMILY SSF56436 36 260 1.08E-58 T 11-10-2018 IPR016187 C-type lectin fold VV93_v1c36720 fe4be49a505ecfc5c345751a63200e25 261 Pfam PF03781 Sulfatase-modifying factor enzyme 1 36 258 6.1E-46 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VV93_v1c36720 fe4be49a505ecfc5c345751a63200e25 261 Gene3D G3DSA:3.90.1580.10 29 258 1.6E-58 T 11-10-2018 VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 Gene3D G3DSA:3.30.70.270 432 596 3.4E-36 T 11-10-2018 VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 435 589 1.9E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 Gene3D G3DSA:3.30.450.20 145 270 2.4E-9 T 11-10-2018 VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 SUPERFAMILY SSF55073 441 590 1.02E-30 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 Pfam PF00990 Diguanylate cyclase, GGDEF domain 437 587 2.5E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 SMART SM00267 423 591 1.6E-28 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c30590 36b21575116ec477a129ca4d25c67975 602 Pfam PF17201 Cache 3/Cache 2 fusion domain 174 269 7.5E-7 T 11-10-2018 IPR033462 Cache 3/Cache 2 fusion domain VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 Gene3D G3DSA:3.30.70.270 149 321 1.6E-43 T 11-10-2018 VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 SUPERFAMILY SSF55073 159 320 4.87E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 SUPERFAMILY SSF55785 17 97 2.47E-7 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 Pfam PF08448 PAS fold 22 135 2.8E-7 T 11-10-2018 IPR013656 PAS fold-4 VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 Gene3D G3DSA:3.30.450.20 12 148 6.1E-10 T 11-10-2018 VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 SMART SM00267 143 320 1.2E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 150 318 2.7E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20880 c1ac92d5618ddcbb1eaaa87914f6a734 322 Pfam PF00990 Diguanylate cyclase, GGDEF domain 156 315 2.3E-41 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c39560 079c9d53a2ca3b670ec340f82da9fb24 298 SUPERFAMILY SSF103481 191 291 2.35E-5 T 11-10-2018 VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 ProSitePatterns PS00893 Nudix box signature. 63 84 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 Gene3D G3DSA:3.90.79.10 36 186 1.3E-13 T 11-10-2018 VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 SUPERFAMILY SSF55811 35 167 8.39E-18 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 Pfam PF01569 PAP2 superfamily 245 358 2.2E-7 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 Pfam PF00293 NUDIX domain 37 155 5.2E-10 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c14430 76f8a415dc11f3cc224acaa51f7a7852 476 SUPERFAMILY SSF48317 189 356 1.07E-6 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VV93_v1c43510 5596b3d86701308669128ab1c5f71f91 176 Pfam PF10973 Protein of unknown function (DUF2799) 29 110 1.9E-24 T 11-10-2018 IPR021242 Protein of unknown function DUF2799 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 50.562 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 SUPERFAMILY SSF51395 1 336 1.23E-105 T 11-10-2018 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 PIRSF PIRSF000164 10 336 4.3E-107 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 336 1.3E-88 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 1.7E-145 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 Gene3D G3DSA:3.20.20.70 2 336 2.6E-140 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c15270 714a6a06178d9f2b17172d9d10ddf668 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 Pfam PF17384 RimP C-terminal SH3 domain 86 151 3.2E-21 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 Gene3D G3DSA:3.30.300.70 1 80 9.2E-27 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 SUPERFAMILY SSF74942 84 151 1.57E-17 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 Pfam PF02576 RimP N-terminal domain 12 83 4.8E-29 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 SUPERFAMILY SSF75420 2 83 4.71E-26 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily VV93_v1c24270 7e6d45ecbbe31e4c0ee3d42fb3287d8c 151 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 24.907 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 19 157 1.7E-63 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 20 162 1.0E-78 T 11-10-2018 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 PIRSF PIRSF001399 16 162 4.2E-58 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 ProSitePatterns PS01029 Dehydroquinase class II signature. 23 40 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 162 75.553 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 Gene3D G3DSA:3.40.50.9100 11 162 5.3E-66 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 Pfam PF01220 Dehydroquinase class II 19 155 6.7E-61 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c28520 d6863c3038ed4f58f4bae77cd1b8035a 162 SUPERFAMILY SSF52304 15 158 8.5E-62 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 VV93_v1c42550 5c8c9060fde96c79e5d55bfbfe0a3029 318 SUPERFAMILY SSF53822 23 303 2.88E-60 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c42550 5c8c9060fde96c79e5d55bfbfe0a3029 318 Gene3D G3DSA:3.40.50.2300 122 263 2.1E-58 T 11-10-2018 VV93_v1c42550 5c8c9060fde96c79e5d55bfbfe0a3029 318 Pfam PF13407 Periplasmic binding protein domain 24 280 2.5E-44 T 11-10-2018 IPR025997 Periplasmic binding protein VV93_v1c42550 5c8c9060fde96c79e5d55bfbfe0a3029 318 Gene3D G3DSA:3.40.50.2300 28 280 2.1E-58 T 11-10-2018 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 9 233 3.0E-40 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 Pfam PF11967 Recombination protein O N terminal 8 79 1.2E-22 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 Hamap MF_00201 DNA repair protein RecO [recO]. 4 233 22.96 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 Gene3D G3DSA:2.40.50.140 5 81 1.5E-32 T 11-10-2018 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 Pfam PF02565 Recombination protein O C terminal 88 228 3.4E-24 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 SUPERFAMILY SSF50249 8 78 3.94E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 Gene3D G3DSA:1.20.1440.120 82 242 2.3E-53 T 11-10-2018 VV93_v1c25380 35eeadd1cda02a345fc96489307608a9 243 SUPERFAMILY SSF57863 88 168 1.67E-12 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 Gene3D G3DSA:3.30.1330.60 57 197 4.3E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 PRINTS PR01021 OMPA domain signature 139 155 5.1E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 PRINTS PR01021 OMPA domain signature 124 139 5.1E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 ProSitePatterns PS01068 OmpA-like domain. 126 170 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 SUPERFAMILY SSF103088 81 194 1.83E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c40150 922a4e9ceb75bbc05bd9f6eaa58298e7 198 Pfam PF00691 OmpA family 94 188 7.0E-17 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 Pfam PF01842 ACT domain 5 52 2.2E-6 T 11-10-2018 IPR002912 ACT domain VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 277 44.723 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 Pfam PF00551 Formyl transferase 82 259 2.2E-47 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 SUPERFAMILY SSF55021 4 54 3.04E-8 T 11-10-2018 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 Gene3D G3DSA:3.30.70.260 1 79 1.0E-14 T 11-10-2018 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PIRSF PIRSF036480 1 277 1.2E-111 T 11-10-2018 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 Gene3D G3DSA:3.40.50.170 81 277 3.2E-67 T 11-10-2018 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 83 105 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 229 251 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 276 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 132 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 7.7E-65 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 277 8.5E-122 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 VV93_v1c09690 e6b048ae88ef52577a7a24b44087929a 277 SUPERFAMILY SSF53328 82 276 1.31E-59 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 391 407 8.1E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 243 256 8.1E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 214 230 8.1E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 198 208 8.1E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 261 278 8.1E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 Gene3D G3DSA:3.30.930.10 157 510 2.0E-130 T 11-10-2018 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 SUPERFAMILY SSF55681 161 507 1.57E-118 T 11-10-2018 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 Pfam PF00152 tRNA synthetases class II (D, K and N) 161 506 8.4E-81 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 SUPERFAMILY SSF50249 16 154 1.27E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 Pfam PF01336 OB-fold nucleic acid binding domain 73 145 7.1E-8 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 24 509 43.193 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 19 509 1.7E-199 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c06080 4d5c31e45363f0d9243f1c79588fc5a8 510 Gene3D G3DSA:2.40.50.140 10 156 2.4E-28 T 11-10-2018 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 193 727 1.9E-154 T 11-10-2018 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 SUPERFAMILY SSF53955 186 382 2.81E-69 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 48 770 0.0 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Pfam PF00912 Transglycosylase 189 360 1.3E-59 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 PIRSF PIRSF002799 5 789 0.0 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 SUPERFAMILY SSF56601 342 769 1.3E-108 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Gene3D G3DSA:3.40.710.10 83 740 2.9E-261 T 11-10-2018 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Pfam PF14814 Bifunctional transglycosylase second domain 93 177 7.4E-26 T 11-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Gene3D G3DSA:3.30.2060.10 91 180 2.9E-261 T 11-10-2018 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Gene3D G3DSA:1.10.3810.10 181 384 2.9E-261 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c24680 e8b824cf297d662dcbd74db38a413b63 789 Pfam PF00905 Penicillin binding protein transpeptidase domain 452 690 3.6E-24 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 ProSitePatterns PS00818 Dps protein family signature 1. 39 55 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 SUPERFAMILY SSF47240 4 157 4.06E-43 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 39 55 3.8E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 134 152 3.8E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 63 79 3.8E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 ProSitePatterns PS00819 Dps protein family signature 2. 65 79 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 Pfam PF00210 Ferritin-like domain 19 157 4.4E-25 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 Gene3D G3DSA:1.20.1260.10 1 157 1.5E-54 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c18140 2eb5f09127002aa6b25a3b0c2096e5d3 157 PIRSF PIRSF005900 1 157 1.6E-44 T 11-10-2018 IPR002177 DNA-binding protein Dps VV93_v1c32970 7d982c6e0ec69c8efb097b5623fb8e42 92 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 1 89 8.6E-18 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VV93_v1c32970 7d982c6e0ec69c8efb097b5623fb8e42 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 2 89 3.2E-15 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VV93_v1c32970 7d982c6e0ec69c8efb097b5623fb8e42 92 Gene3D G3DSA:3.30.2310.20 1 90 2.9E-15 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 SMART SM00420 10 63 1.0E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 Pfam PF00455 DeoR C terminal sensor domain 79 237 3.2E-44 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 SMART SM01134 77 238 4.5E-58 T 11-10-2018 VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 Pfam PF08220 DeoR-like helix-turn-helix domain 10 65 1.1E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 SUPERFAMILY SSF100950 78 236 5.44E-24 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 SUPERFAMILY SSF46785 7 80 5.96E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 Gene3D G3DSA:1.10.10.10 2 60 4.5E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 61 1.3E-7 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 29 43 1.3E-7 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c14160 d85b36ab1b3646decafde7af48433465 257 Gene3D G3DSA:3.30.750.70 78 143 6.0E-5 T 11-10-2018 VV93_v1c22110 6ac5bec8701ecad4d6dfa0aa12510517 731 SUPERFAMILY SSF56349 352 541 2.38E-8 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c22110 6ac5bec8701ecad4d6dfa0aa12510517 731 Pfam PF00589 Phage integrase family 352 539 3.9E-6 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c22110 6ac5bec8701ecad4d6dfa0aa12510517 731 Gene3D G3DSA:1.10.443.10 332 553 2.8E-10 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 3.0E-128 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 SUPERFAMILY SSF52374 11 337 1.63E-103 T 11-10-2018 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 2.8E-63 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 3.5E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 3.5E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 3.5E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 3.5E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Gene3D G3DSA:3.40.50.620 30 247 1.2E-106 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 54.217 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Gene3D G3DSA:2.40.240.10 340 547 6.9E-81 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Gene3D G3DSA:3.90.800.10 101 209 1.2E-106 T 11-10-2018 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Gene3D G3DSA:1.10.1160.10 261 339 6.6E-37 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 552 5.5E-296 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 SUPERFAMILY SSF50715 340 548 1.67E-78 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 Gene3D G3DSA:2.40.240.10 348 466 6.9E-81 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 VV93_v1c09360 65adfd9e5d87aa1559d0ad143fe6186d 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 SUPERFAMILY SSF51735 1 168 5.26E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 37.081 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 SUPERFAMILY SSF55347 154 308 1.42E-46 T 11-10-2018 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 SMART SM00859 3 146 1.2E-44 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 164 311 5.3E-11 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 Gene3D G3DSA:3.40.50.720 6 327 2.3E-115 T 11-10-2018 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 3.2E-113 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 145 2.4E-29 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 VV93_v1c27300 471a2f896182b22efb2c013c44244fe6 334 Gene3D G3DSA:3.30.360.10 153 312 2.3E-115 T 11-10-2018 VV93_v1c45300 b713b328e38740a3eac0e0d9ab1717ad 258 Gene3D G3DSA:3.20.20.450 29 258 2.9E-43 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c45300 b713b328e38740a3eac0e0d9ab1717ad 258 SMART SM00052 8 255 1.6E-10 T 11-10-2018 IPR001633 EAL domain VV93_v1c45300 b713b328e38740a3eac0e0d9ab1717ad 258 Pfam PF00563 EAL domain 33 254 1.4E-38 T 11-10-2018 IPR001633 EAL domain VV93_v1c45300 b713b328e38740a3eac0e0d9ab1717ad 258 SUPERFAMILY SSF141868 35 255 6.28E-43 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 SMART SM00304 209 263 1.1E-15 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 Gene3D G3DSA:1.10.287.950 209 540 4.2E-76 T 11-10-2018 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 505 5.7E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 SMART SM00283 278 539 1.0E-83 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 SUPERFAMILY SSF58104 231 540 1.19E-80 T 11-10-2018 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 Pfam PF00672 HAMP domain 209 259 1.7E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 453 482 2.1E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 185 205 2.1E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 2.1E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c31030 4c97179620f565e2b2c1b3f11eddffbb 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 376 403 2.1E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c42030 c47f2f3b08604bec6d4990ab3a2dce41 229 Gene3D G3DSA:1.10.3720.10 2 219 3.0E-50 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c42030 c47f2f3b08604bec6d4990ab3a2dce41 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 111 5.4E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c42030 c47f2f3b08604bec6d4990ab3a2dce41 229 SUPERFAMILY SSF161098 10 202 3.14E-41 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c42030 c47f2f3b08604bec6d4990ab3a2dce41 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 216 3.6E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c38860 841dd2167032d57f758670e668601c65 107 Gene3D G3DSA:2.102.10.10 1 106 4.6E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c38860 841dd2167032d57f758670e668601c65 107 SUPERFAMILY SSF50022 1 105 2.17E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c38860 841dd2167032d57f758670e668601c65 107 Pfam PF13806 Rieske-like [2Fe-2S] domain 7 105 3.5E-33 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VV93_v1c38860 841dd2167032d57f758670e668601c65 107 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 106 2.2E-40 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 Gene3D G3DSA:1.10.1390.10 508 550 3.8E-20 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 Pfam PF00342 Phosphoglucose isomerase 53 542 1.6E-254 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 Gene3D G3DSA:3.40.50.10490 13 507 2.6E-242 T 11-10-2018 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 498 515 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 SUPERFAMILY SSF53697 6 548 6.95E-227 T 11-10-2018 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 151 170 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 498 511 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 466 484 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 484 498 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 339 360 2.2E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 Gene3D G3DSA:3.40.50.10490 99 292 2.6E-242 T 11-10-2018 VV93_v1c27040 cadd320f180779242011210ebfb0d254 550 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 47 525 43.131 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c08700 bc170993f59b18e35cc9ee20ae2aa17e 193 SUPERFAMILY SSF160443 93 174 3.92E-13 T 11-10-2018 IPR036063 Smr domain superfamily VV93_v1c08700 bc170993f59b18e35cc9ee20ae2aa17e 193 SMART SM00463 92 175 1.0E-12 T 11-10-2018 IPR002625 Smr domain VV93_v1c08700 bc170993f59b18e35cc9ee20ae2aa17e 193 Pfam PF01713 Smr domain 95 174 5.9E-18 T 11-10-2018 IPR002625 Smr domain VV93_v1c08700 bc170993f59b18e35cc9ee20ae2aa17e 193 Gene3D G3DSA:3.30.1370.110 47 181 2.4E-40 T 11-10-2018 VV93_v1c39470 9f6101794829678f0388ca7802564b15 101 Pfam PF14375 Cysteine-rich CWC 53 96 7.0E-6 T 11-10-2018 IPR032720 Cysteine-rich CWC VV93_v1c39470 9f6101794829678f0388ca7802564b15 101 Pfam PF06945 Protein of unknown function (DUF1289) 3 47 1.0E-16 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 SUPERFAMILY SSF51316 240 379 6.8E-60 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Pfam PF01625 Peptide methionine sulfoxide reductase 44 194 1.5E-55 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Gene3D G3DSA:3.30.1060.10 18 202 5.0E-61 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 238 364 35.198 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Gene3D G3DSA:2.170.150.20 234 380 1.4E-56 T 11-10-2018 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 193 1.2E-49 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 240 372 6.0E-61 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Pfam PF01641 SelR domain 244 363 2.0E-46 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 41 200 33.879 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c34430 1419df8cb2f4f9389df7bae06051bef3 380 SUPERFAMILY SSF55068 33 206 1.12E-68 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 Pfam PF13410 Glutathione S-transferase, C-terminal domain 176 242 5.2E-11 T 11-10-2018 VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 Gene3D G3DSA:3.40.30.10 17 254 1.2E-112 T 11-10-2018 VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 Pfam PF02798 Glutathione S-transferase, N-terminal domain 44 126 7.4E-7 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 Gene3D G3DSA:1.20.1050.10 132 248 1.2E-112 T 11-10-2018 VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 SUPERFAMILY SSF52833 38 130 4.19E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c31080 0f98e1fb9979545babe0929ade56bca2 285 SUPERFAMILY SSF47616 132 278 1.32E-33 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 140 148 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 Gene3D G3DSA:2.60.120.10 21 291 1.6E-132 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 Gene3D G3DSA:2.60.120.10 317 398 1.6E-132 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 SUPERFAMILY SSF51182 16 395 2.27E-106 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 Pfam PF01238 Phosphomannose isomerase type I 17 368 9.8E-89 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 47 62 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 271 290 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 236 251 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 290 309 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 140 163 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 252 271 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 95 116 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PRINTS PR00714 Phosphomannose isomerase type I signature 19 37 1.6E-69 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 PIRSF PIRSF001480 13 405 1.5E-103 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 15 397 1.7E-95 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 271 296 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c31730 e0eaee7bc022962eb7bda1b0739b37d2 405 Gene3D G3DSA:1.10.441.10 164 316 1.6E-132 T 11-10-2018 VV93_v1c29860 5e32666004c3aff28687637feb65fd9f 144 Gene3D G3DSA:3.40.50.360 1 144 1.1E-43 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c29860 5e32666004c3aff28687637feb65fd9f 144 Pfam PF00258 Flavodoxin 4 136 3.5E-21 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VV93_v1c29860 5e32666004c3aff28687637feb65fd9f 144 SUPERFAMILY SSF52218 2 143 2.39E-38 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 PIRSF PIRSF000412 1 416 5.6E-169 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 SUPERFAMILY SSF53383 6 415 5.44E-185 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 Pfam PF00464 Serine hydroxymethyltransferase 8 385 4.2E-183 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 Gene3D G3DSA:3.90.1150.10 10 395 4.1E-187 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 52.414 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c08350 bcd21de3c25c21cd530fd7fa583c92b4 416 Gene3D G3DSA:3.40.640.10 37 288 4.1E-187 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 190 1.4E-27 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 Gene3D G3DSA:1.10.10.10 130 197 9.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 Gene3D G3DSA:1.10.1740.10 16 99 9.8E-24 T 11-10-2018 VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 Pfam PF04542 Sigma-70 region 2 36 102 8.6E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 SUPERFAMILY SSF88659 130 192 6.35E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 SUPERFAMILY SSF88946 9 118 2.16E-25 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c23150 a491d098ed65030ea0c464908f246a32 197 Pfam PF04545 Sigma-70, region 4 142 190 2.9E-14 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VV93_v1c03890 e5be2ee4dd7480dbfc52f81e4d96f2b9 234 SMART SM00382 35 228 3.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c03890 e5be2ee4dd7480dbfc52f81e4d96f2b9 234 SUPERFAMILY SSF52540 5 225 8.8E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c03890 e5be2ee4dd7480dbfc52f81e4d96f2b9 234 Gene3D G3DSA:3.40.50.300 6 232 4.2E-57 T 11-10-2018 VV93_v1c03890 e5be2ee4dd7480dbfc52f81e4d96f2b9 234 Pfam PF00005 ABC transporter 30 180 2.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 126 146 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 18 287 56.704 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 SUPERFAMILY SSF52096 19 284 8.11E-79 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 Gene3D G3DSA:3.90.226.10 3 225 5.5E-85 T 11-10-2018 VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 Gene3D G3DSA:1.10.12.10 226 276 5.4E-31 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 34 282 3.6E-78 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VV93_v1c10390 20d6de8cb1cc5606e4299552a1a93591 288 TIGRFAM TIGR01929 menB: naphthoate synthase 25 284 2.0E-146 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 VV93_v1c36680 c27b799c8fec7bad4301f440891a4728 579 Pfam PF13519 von Willebrand factor type A domain 106 211 1.2E-10 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c36680 c27b799c8fec7bad4301f440891a4728 579 SUPERFAMILY SSF53300 106 272 3.11E-13 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c36680 c27b799c8fec7bad4301f440891a4728 579 Gene3D G3DSA:3.40.50.410 102 284 5.4E-22 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c08080 832bc300e391db4f3aef8777c3e71e00 294 Pfam PF00348 Polyprenyl synthetase 28 270 3.2E-59 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VV93_v1c08080 832bc300e391db4f3aef8777c3e71e00 294 Gene3D G3DSA:1.10.600.10 1 294 7.5E-114 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily VV93_v1c08080 832bc300e391db4f3aef8777c3e71e00 294 SUPERFAMILY SSF48576 2 287 3.84E-87 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily VV93_v1c08080 832bc300e391db4f3aef8777c3e71e00 294 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 213 225 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site VV93_v1c08080 832bc300e391db4f3aef8777c3e71e00 294 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 79 95 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 SUPERFAMILY SSF51230 2 87 7.46E-25 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Pfam PF02817 e3 binding domain 129 161 4.5E-8 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Gene3D G3DSA:4.10.320.10 118 164 2.9E-10 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Gene3D G3DSA:2.40.50.100 1 89 5.0E-23 T 11-10-2018 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Gene3D G3DSA:3.30.559.10 165 381 4.8E-51 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 SUPERFAMILY SSF47005 122 164 7.98E-9 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 173 380 8.3E-55 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 Pfam PF00364 Biotin-requiring enzyme 3 75 2.1E-18 T 11-10-2018 IPR000089 Biotin/lipoyl attachment VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 VV93_v1c39660 7a7d3278ede3e3f532df2bfe049d2609 381 SUPERFAMILY SSF52777 165 379 8.01E-56 T 11-10-2018 VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 Gene3D G3DSA:3.40.30.10 1 184 5.9E-61 T 11-10-2018 VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 Pfam PF00578 AhpC/TSA family 7 131 3.5E-33 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 185 1.4E-103 T 11-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 PIRSF PIRSF000239 1 185 6.8E-52 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 SUPERFAMILY SSF52833 2 184 3.39E-55 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c39920 e3a2b7897c67c3c39229eecf9a2f2314 185 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 154 179 1.5E-6 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 PIRSF PIRSF006078 1 377 7.0E-140 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 SUPERFAMILY SSF110738 1 375 1.7E-144 T 11-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 Gene3D G3DSA:3.90.1510.10 42 276 3.6E-142 T 11-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 373 4.3E-162 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 Pfam PF02595 Glycerate kinase family 3 372 2.2E-150 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 VV93_v1c24650 dfda703a9e4bfdb431e52a6070e77055 378 Gene3D G3DSA:3.40.50.10350 2 361 3.6E-142 T 11-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:1.20.1580.10 691 829 1.0E-139 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Pfam PF00005 ABC transporter 622 859 7.1E-10 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:3.40.50.300 6 593 3.0E-245 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:3.30.190.20 130 243 3.0E-245 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:1.10.8.280 286 402 3.0E-245 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 SUPERFAMILY SSF52540 4 568 3.0E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:3.40.50.300 616 935 1.0E-139 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 924 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 939 22.871 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 Gene3D G3DSA:1.20.1580.10 90 491 3.0E-245 T 11-10-2018 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c26780 14dcd8b70f2e962661dd907311293284 940 SUPERFAMILY SSF52540 620 912 2.72E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c03740 f982166ecb1d816ae490a286a8e6680e 206 SUPERFAMILY SSF54534 7 205 5.89E-54 T 11-10-2018 VV93_v1c03740 f982166ecb1d816ae490a286a8e6680e 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 3.7E-22 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 VV93_v1c03740 f982166ecb1d816ae490a286a8e6680e 206 Gene3D G3DSA:1.10.287.460 4 67 1.4E-17 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 VV93_v1c03740 f982166ecb1d816ae490a286a8e6680e 206 Gene3D G3DSA:3.10.50.40 68 206 4.9E-49 T 11-10-2018 VV93_v1c03740 f982166ecb1d816ae490a286a8e6680e 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 4.5E-26 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Pfam PF03527 RHS protein 1027 1063 2.3E-15 T 11-10-2018 IPR001826 RHS protein VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 441 473 3.0E-4 T 11-10-2018 IPR006530 YD repeat VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 407 440 7.9E-4 T 11-10-2018 IPR006530 YD repeat VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 PRINTS PR00394 RHS protein signature 1074 1094 9.1E-14 T 11-10-2018 IPR001826 RHS protein VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 PRINTS PR00394 RHS protein signature 1021 1041 9.1E-14 T 11-10-2018 IPR001826 RHS protein VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 PRINTS PR00394 RHS protein signature 1097 1116 9.1E-14 T 11-10-2018 IPR001826 RHS protein VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Gene3D G3DSA:3.90.930.1 431 577 8.7E-12 T 11-10-2018 VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1054 1129 6.8E-29 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Pfam PF05593 RHS Repeat 421 457 2.8E-6 T 11-10-2018 IPR031325 RHS repeat VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Pfam PF05593 RHS Repeat 588 628 6.9E-5 T 11-10-2018 IPR031325 RHS repeat VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Pfam PF05593 RHS Repeat 311 346 2.2E-7 T 11-10-2018 IPR031325 RHS repeat VV93_v1c39190 60dd06b8189bfec19faa9cb0272f38aa 1487 Gene3D G3DSA:2.180.10.10 874 1129 1.3E-43 T 11-10-2018 VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 Gene3D G3DSA:3.40.50.1100 33 137 2.5E-24 T 11-10-2018 VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 Gene3D G3DSA:3.40.50.1100 14 285 2.5E-24 T 11-10-2018 VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 PIRSF PIRSF006278 4 183 5.0E-20 T 11-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 PIRSF PIRSF006278 202 297 0.15 T 11-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 SUPERFAMILY SSF53686 9 295 9.72E-58 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c19070 f4b4001bb62a48ed07e9cf3a3270675a 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 15 219 1.3E-10 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c16080 126bc1f3855a9bca5aa8b88189119b50 195 Pfam PF12804 MobA-like NTP transferase domain 10 158 9.4E-33 T 11-10-2018 IPR025877 MobA-like NTP transferase VV93_v1c16080 126bc1f3855a9bca5aa8b88189119b50 195 Gene3D G3DSA:3.90.550.10 6 192 2.0E-55 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c16080 126bc1f3855a9bca5aa8b88189119b50 195 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 190 29.806 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VV93_v1c16080 126bc1f3855a9bca5aa8b88189119b50 195 SUPERFAMILY SSF53448 8 188 8.74E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c16080 126bc1f3855a9bca5aa8b88189119b50 195 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 8 187 4.1E-74 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 Gene3D G3DSA:2.60.40.10 293 402 7.6E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 93 98 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 Gene3D G3DSA:2.40.10.10 55 275 2.9E-61 T 11-10-2018 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 83 98 9.4E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 231 243 9.4E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 139 153 9.4E-13 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 SUPERFAMILY SSF50494 22 286 4.66E-65 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 232 243 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 SMART SM00495 489 540 7.6E-5 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 SMART SM00495 411 456 1.4E-10 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 Gene3D G3DSA:2.40.10.10 67 276 2.9E-61 T 11-10-2018 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 SUPERFAMILY SSF51055 407 457 1.83E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 Gene3D G3DSA:2.10.10.20 411 454 3.6E-15 T 11-10-2018 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 Pfam PF00089 Trypsin 55 279 1.0E-51 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c14420 1433c5e188cb16f8a00850c1ef2ec46b 544 SMART SM00020 54 281 3.5E-66 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 23 368 34.402 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 24 160 2.1E-46 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 200 353 1.4E-32 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 SUPERFAMILY SSF53756 21 368 3.14E-123 T 11-10-2018 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 Gene3D G3DSA:3.40.50.2000 24 176 3.5E-119 T 11-10-2018 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 17 364 3.0E-116 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05570 cd17a3332d38f26a4b59132c090fa6e0 371 Gene3D G3DSA:3.40.50.2000 177 334 3.5E-119 T 11-10-2018 VV93_v1c30630 39dff68b17498030e13f1e307affa0fc 926 SUPERFAMILY SSF48208 366 844 4.14E-67 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c30630 39dff68b17498030e13f1e307affa0fc 926 Pfam PF06202 Amylo-alpha-1,6-glucosidase 400 765 9.2E-119 T 11-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 VV93_v1c30630 39dff68b17498030e13f1e307affa0fc 926 Gene3D G3DSA:1.50.10.10 418 764 4.0E-44 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 SUPERFAMILY SSF55681 92 327 3.65E-83 T 11-10-2018 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 SUPERFAMILY SSF46589 14 99 2.51E-22 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.282 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 2.0E-25 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 3.9E-112 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 Gene3D G3DSA:3.30.930.10 7 327 6.4E-127 T 11-10-2018 VV93_v1c17330 e0bf994eef1981dc92ba14392d655915 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 7.8E-107 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 VV93_v1c34420 d005bca18200dd7dd02f5b7d50c47c6d 338 SMART SM00267 168 338 9.7E-53 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34420 d005bca18200dd7dd02f5b7d50c47c6d 338 Gene3D G3DSA:3.30.70.270 165 336 1.1E-50 T 11-10-2018 VV93_v1c34420 d005bca18200dd7dd02f5b7d50c47c6d 338 SUPERFAMILY SSF55073 184 336 2.28E-42 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c34420 d005bca18200dd7dd02f5b7d50c47c6d 338 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 176 335 3.7E-43 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34420 d005bca18200dd7dd02f5b7d50c47c6d 338 Pfam PF00990 Diguanylate cyclase, GGDEF domain 179 334 2.5E-41 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 359 98.939 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 SUPERFAMILY SSF52540 1 344 3.9E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 355 4.0E-38 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 354 1.1E-121 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 Gene3D G3DSA:1.20.1050.90 121 298 3.0E-84 T 11-10-2018 VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 Gene3D G3DSA:3.40.50.300 8 332 3.0E-84 T 11-10-2018 VV93_v1c00030 770181c6141896912fcbeb419fab2839 359 ProSitePatterns PS00618 RecF protein signature 2. 299 317 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 6 489 7.2E-98 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 SUPERFAMILY SSF55486 1 490 9.52E-120 T 11-10-2018 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PIRSF PIRSF006615 1 490 1.3E-201 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 397 418 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 441 459 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 288 304 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 241 260 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 261 280 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 327 346 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 145 165 4.7E-44 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 VV93_v1c14670 33b9e71135a5e98b1031e56d00b38dc0 490 Gene3D G3DSA:1.10.1370.30 1 490 3.1E-194 T 11-10-2018 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF55666 451 550 2.95E-27 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF50249 608 695 9.42E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF00575 S1 RNA binding domain 620 691 1.5E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Gene3D G3DSA:3.30.230.70 234 550 1.3E-113 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Gene3D G3DSA:2.40.50.140 623 694 2.6E-29 T 11-10-2018 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF54791 555 623 1.14E-15 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF01138 3' exoribonuclease family, domain 1 17 145 1.4E-17 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 7.9E-20 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 30.16 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SMART SM00322 553 618 1.7E-11 T 11-10-2018 IPR004087 K Homology domain GO:0003676 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF55666 146 236 3.23E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF54211 5 145 1.27E-48 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 2.7E-24 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 1.7E-12 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Gene3D G3DSA:3.30.230.70 2 229 1.4E-77 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SMART SM00316 621 691 1.8E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Pfam PF00013 KH domain 557 615 1.0E-8 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 PIRSF PIRSF005499 2 708 1.2E-295 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 Gene3D G3DSA:3.30.1370.10 551 622 1.1E-18 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 VV93_v1c24170 5de812332fc70fca8bbd0194eaeec94f 708 SUPERFAMILY SSF54211 293 489 2.53E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 SUPERFAMILY SSF54893 2 100 1.44E-35 T 11-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 Gene3D G3DSA:2.30.30.20 101 153 7.8E-24 T 11-10-2018 VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 150 8.9E-60 T 11-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 Gene3D G3DSA:3.30.70.140 1 100 1.2E-36 T 11-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 1.0E-46 T 11-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 150 6.3E-19 T 11-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 33.774 T 11-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 SUPERFAMILY SSF57825 102 151 2.75E-16 T 11-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily VV93_v1c26440 5526107dada0078bb4ff4bd14617c487 153 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 1.6E-30 T 11-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal VV93_v1c42910 05d81d2e3f55dc2ccad2bd542b5a5893 743 Gene3D G3DSA:2.160.20.10 379 732 2.7E-64 T 11-10-2018 IPR012334 Pectin lyase fold VV93_v1c42910 05d81d2e3f55dc2ccad2bd542b5a5893 743 SUPERFAMILY SSF51126 382 712 5.71E-48 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.357 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 5.2E-6 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 Pfam PF00953 Glycosyl transferase family 4 99 283 2.5E-37 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05540 1c4a2cb50a3ef21756069db0ab3d9fd9 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 5.3E-157 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c09440 9cc0f5c2558678341f6043418ecd121a 222 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 13 135 1.0E-69 T 11-10-2018 IPR013559 YheO-like VV93_v1c09440 9cc0f5c2558678341f6043418ecd121a 222 Pfam PF13309 HTH domain 160 217 4.9E-13 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VV93_v1c09440 9cc0f5c2558678341f6043418ecd121a 222 Pfam PF08348 YheO-like PAS domain 17 123 3.8E-36 T 11-10-2018 IPR013559 YheO-like VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 136 2.9E-37 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Gene3D G3DSA:3.40.120.10 172 365 1.1E-59 T 11-10-2018 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 SUPERFAMILY SSF53738 2 187 4.32E-40 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 SUPERFAMILY SSF53738 250 379 2.67E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Gene3D G3DSA:3.40.120.10 263 368 1.1E-59 T 11-10-2018 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 267 378 4.3E-26 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 419 466 6.1E-9 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 2.1E-11 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 214 227 2.1E-11 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 257 2.1E-11 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 180 199 2.1E-11 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Gene3D G3DSA:3.30.310.50 369 469 1.1E-15 T 11-10-2018 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 162 262 4.7E-24 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 SUPERFAMILY SSF55957 373 459 2.62E-17 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24560 463e481e4375f3445f2cef6d8169cfdc 470 Gene3D G3DSA:3.40.120.10 1 171 2.8E-46 T 11-10-2018 VV93_v1c19120 949082a2a07a409083c3cbd7a1ae1cf2 589 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 163 324 5.7E-17 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c19120 949082a2a07a409083c3cbd7a1ae1cf2 589 SUPERFAMILY SSF53850 123 587 1.79E-59 T 11-10-2018 VV93_v1c19120 949082a2a07a409083c3cbd7a1ae1cf2 589 Gene3D G3DSA:3.40.190.10 121 351 1.9E-27 T 11-10-2018 VV93_v1c19120 949082a2a07a409083c3cbd7a1ae1cf2 589 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 119 3.8E-33 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VV93_v1c32240 e134c8245ef1a25bb5d12b66ef755706 615 Gene3D G3DSA:1.10.1370.30 27 311 2.0E-8 T 11-10-2018 VV93_v1c32240 e134c8245ef1a25bb5d12b66ef755706 615 Gene3D G3DSA:1.10.1370.20 317 501 6.9E-9 T 11-10-2018 VV93_v1c32240 e134c8245ef1a25bb5d12b66ef755706 615 Pfam PF01432 Peptidase family M3 284 549 2.8E-16 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VV93_v1c32240 e134c8245ef1a25bb5d12b66ef755706 615 SUPERFAMILY SSF55486 3 551 2.75E-73 T 11-10-2018 VV93_v1c08110 a7931b7f9582eb05e2a9d5583b432f8a 317 Gene3D G3DSA:3.30.1330.60 153 301 3.7E-53 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c08110 a7931b7f9582eb05e2a9d5583b432f8a 317 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 57 2.7E-17 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain VV93_v1c08110 a7931b7f9582eb05e2a9d5583b432f8a 317 SUPERFAMILY SSF103088 182 299 8.76E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c08110 a7931b7f9582eb05e2a9d5583b432f8a 317 Pfam PF00691 OmpA family 195 293 1.3E-18 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c15320 5a9846659f794abfef9873e4324eda13 568 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 548 568 0.0016 T 11-10-2018 IPR020008 GlyGly-CTERM domain VV93_v1c15320 5a9846659f794abfef9873e4324eda13 568 Pfam PF11949 Protein of unknown function (DUF3466) 7 179 4.9E-11 T 11-10-2018 IPR022562 Protein of unknown function DUF3466 VV93_v1c15320 5a9846659f794abfef9873e4324eda13 568 Pfam PF11949 Protein of unknown function (DUF3466) 234 568 4.1E-54 T 11-10-2018 IPR022562 Protein of unknown function DUF3466 VV93_v1c10460 3d39c20ceeae61957f7dcb92b035d401 289 Pfam PF04280 Tim44-like domain 167 288 2.0E-14 T 11-10-2018 IPR007379 Tim44-like domain VV93_v1c10460 3d39c20ceeae61957f7dcb92b035d401 289 Gene3D G3DSA:3.10.450.240 164 288 1.3E-7 T 11-10-2018 VV93_v1c10460 3d39c20ceeae61957f7dcb92b035d401 289 Pfam PF07466 Protein of unknown function (DUF1517) 28 125 1.1E-5 T 11-10-2018 IPR010903 Protein of unknown function DUF1517 VV93_v1c10460 3d39c20ceeae61957f7dcb92b035d401 289 SUPERFAMILY SSF54427 168 288 1.75E-15 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c10460 3d39c20ceeae61957f7dcb92b035d401 289 SMART SM00978 158 289 2.0E-35 T 11-10-2018 IPR007379 Tim44-like domain VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 6.5E-19 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 Gene3D G3DSA:2.30.170.50 1 84 1.3E-25 T 11-10-2018 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 29.093 T 11-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 SUPERFAMILY SSF143800 1 81 2.59E-23 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 PRINTS PR01249 Ribosomal protein L31 signature 60 78 5.6E-17 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 PRINTS PR01249 Ribosomal protein L31 signature 45 60 5.6E-17 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.6E-17 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22880 008ece2645d5238365b8e2db5173828a 86 Pfam PF01197 Ribosomal protein L31 1 79 1.9E-27 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c14900 a10350f613242c0fe4012e6443ea1f65 130 SUPERFAMILY SSF52540 9 108 1.12E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c14900 a10350f613242c0fe4012e6443ea1f65 130 Pfam PF13671 AAA domain 7 107 5.3E-21 T 11-10-2018 VV93_v1c14900 a10350f613242c0fe4012e6443ea1f65 130 Gene3D G3DSA:3.40.50.300 5 130 1.5E-30 T 11-10-2018 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 22 57 1.7E-15 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 67 103 4.4E-17 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 116 152 6.2E-16 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 Gene3D G3DSA:3.30.65.10 11 61 3.4E-8 T 11-10-2018 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 Gene3D G3DSA:3.30.65.10 62 111 6.2E-8 T 11-10-2018 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 SUPERFAMILY SSF57783 66 109 1.79E-14 T 11-10-2018 VV93_v1c29430 a55a6417f7860dfafd1571de756e2ff2 189 SUPERFAMILY SSF57783 16 64 5.44E-14 T 11-10-2018 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Pfam PF01171 PP-loop family 22 199 5.6E-59 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 8 309 23.045 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Pfam PF09179 TilS substrate binding domain 248 315 9.7E-15 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 203 5.6E-55 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 SUPERFAMILY SSF52402 15 233 5.19E-62 T 11-10-2018 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 SMART SM00977 365 434 8.4E-23 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Gene3D G3DSA:3.40.50.620 12 233 7.8E-71 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Pfam PF11734 TilS substrate C-terminal domain 367 432 9.7E-23 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 SUPERFAMILY SSF82829 238 319 1.28E-22 T 11-10-2018 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 365 411 7.4E-18 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 Gene3D G3DSA:1.20.59.20 236 318 1.0E-25 T 11-10-2018 VV93_v1c22590 bdfb9564d09c0881ea0ac49a87dc6539 436 SUPERFAMILY SSF56037 323 435 4.97E-29 T 11-10-2018 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 Pfam PF00664 ABC transporter transmembrane region 28 293 1.5E-55 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 Gene3D G3DSA:3.40.50.300 329 581 3.8E-96 T 11-10-2018 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 SUPERFAMILY SSF52540 332 580 1.57E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 Pfam PF00005 ABC transporter 359 509 2.3E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 582 6.5E-241 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 Gene3D G3DSA:1.20.1560.10 2 328 1.6E-81 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 SUPERFAMILY SSF90123 14 327 9.55E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 SMART SM00382 368 555 3.9E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c20660 dc0069a966854cfb1cd92790b8f4833e 583 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 96 112 1.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 81 96 1.8E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 SMART SM00871 142 292 4.7E-21 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 SUPERFAMILY SSF46689 65 113 1.57E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 SUPERFAMILY SSF55136 143 291 1.48E-27 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 Pfam PF06445 GyrI-like small molecule binding domain 143 291 1.3E-30 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 Pfam PF12833 Helix-turn-helix domain 34 112 2.2E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 Gene3D G3DSA:1.10.10.60 62 115 1.5E-16 T 11-10-2018 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 SUPERFAMILY SSF46689 11 62 8.96E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 Gene3D G3DSA:1.10.10.60 5 61 6.3E-15 T 11-10-2018 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 Gene3D G3DSA:3.20.80.10 143 292 4.3E-28 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 SMART SM00342 28 112 1.5E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c34540 11b1c4aef5f7c7e4565c748cde159ab5 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 108 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c00700 1367fbe9cdfcadb3f2cfb19da3d692cc 393 SMART SM00028 327 360 0.0056 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c00700 1367fbe9cdfcadb3f2cfb19da3d692cc 393 Pfam PF07219 HemY protein N-terminus 26 132 3.1E-26 T 11-10-2018 IPR010817 HemY, N-terminal VV93_v1c00700 1367fbe9cdfcadb3f2cfb19da3d692cc 393 SUPERFAMILY SSF48452 85 294 7.59E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c00700 1367fbe9cdfcadb3f2cfb19da3d692cc 393 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 386 1.1E-113 T 11-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 VV93_v1c00700 1367fbe9cdfcadb3f2cfb19da3d692cc 393 SUPERFAMILY SSF48452 252 389 5.18E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 1.0E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 144 157 1.0E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 117 134 1.0E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 278 368 9.1E-23 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 Gene3D G3DSA:2.60.410.10 278 368 8.1E-28 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 Gene3D G3DSA:3.40.710.10 13 276 3.4E-88 T 11-10-2018 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 SUPERFAMILY SSF56601 7 278 4.49E-83 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 258 1.5E-83 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 SMART SM00936 278 368 4.5E-30 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c34710 22b3856bae9b1b327cabbf8d16b051a3 387 SUPERFAMILY SSF69189 278 370 6.67E-24 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 Gene3D G3DSA:2.40.150.20 1 123 1.7E-56 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 1.6E-54 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 1.6E-58 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 SUPERFAMILY SSF50193 2 122 3.66E-51 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.421 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VV93_v1c03560 795111451cfcfe04bee9730d43c306a4 123 SMART SM01374 1 123 1.2E-85 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 SUPERFAMILY SSF54211 3 125 1.67E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 2.3E-109 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 Gene3D G3DSA:3.30.1700.10 129 305 9.1E-71 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 8.0E-144 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 Gene3D G3DSA:3.30.230.20 1 128 3.2E-52 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.719 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 VV93_v1c05620 18f64cc67cc5d96267af27c635e1edb5 305 SUPERFAMILY SSF54211 134 278 3.49E-53 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PIRSF PIRSF001400 1 430 1.9E-190 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 429 2.2E-206 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 Hamap MF_00318 Enolase [eno]. 2 417 44.279 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 Gene3D G3DSA:3.20.20.120 128 433 1.6E-131 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 430 1.5E-135 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 SMART SM01192 143 431 6.3E-212 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 Pfam PF03952 Enolase, N-terminal domain 4 134 3.2E-58 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 SMART SM01193 4 134 1.7E-92 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 SUPERFAMILY SSF51604 143 428 2.69E-125 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 369 386 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 317 328 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 165 178 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 340 354 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 37 51 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 PRINTS PR00148 Enolase signature 107 123 4.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 SUPERFAMILY SSF54826 3 138 4.12E-56 T 11-10-2018 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 ProSitePatterns PS00164 Enolase signature. 340 353 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25270 3fb335023432720a3fe5fe1093272e53 433 Gene3D G3DSA:3.30.390.10 1 127 6.7E-55 T 11-10-2018 IPR029017 Enolase-like, N-terminal VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 SUPERFAMILY SSF53901 7 325 3.07E-63 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 324 3.1E-112 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 184 1.2E-27 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 Gene3D G3DSA:3.40.47.10 1 362 1.4E-152 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 235 324 2.6E-36 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c38490 5ebac37ae2263b9daf08def0c76a5b6f 362 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 4 324 67.072 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Pfam PF14532 Sigma-54 interaction domain 143 289 2.1E-17 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Pfam PF00072 Response regulator receiver domain 8 117 4.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 331 340 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 SUPERFAMILY SSF52172 4 187 5.55E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 SMART SM00448 6 117 1.8E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Gene3D G3DSA:3.40.50.2300 2 133 2.5E-32 T 11-10-2018 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Gene3D G3DSA:3.40.50.300 141 289 1.8E-25 T 11-10-2018 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 SUPERFAMILY SSF52540 142 347 1.07E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Gene3D G3DSA:1.10.8.60 291 359 2.2E-17 T 11-10-2018 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Gene3D G3DSA:1.10.10.60 360 418 1.8E-11 T 11-10-2018 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 Pfam PF02954 Bacterial regulatory protein, Fis family 372 412 5.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c37130 74a98b67f454a6f0e370d5d261a8c148 422 SUPERFAMILY SSF46689 364 414 1.18E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 Gene3D G3DSA:1.10.1060.10 2 97 6.1E-8 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 Pfam PF02754 Cysteine-rich domain 175 260 3.7E-16 T 11-10-2018 IPR004017 Cysteine-rich domain VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 Pfam PF02754 Cysteine-rich domain 304 387 1.6E-11 T 11-10-2018 IPR004017 Cysteine-rich domain VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 Pfam PF13183 4Fe-4S dicluster domain 15 79 1.1E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 12 406 5.6E-219 T 11-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 VV93_v1c35280 e16b024124717c099ca1b403eb5debaa 407 SUPERFAMILY SSF46548 15 92 1.33E-16 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 Pfam PF00209 Sodium:neurotransmitter symporter family 9 119 1.7E-21 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 Pfam PF00209 Sodium:neurotransmitter symporter family 149 447 3.8E-32 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 90 116 3.8E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 314 334 3.8E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 17 38 3.8E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 46 65 3.8E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 SUPERFAMILY SSF161070 9 457 3.27E-129 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VV93_v1c13120 9b255113df2e80d1f2e4fc175f4ac5fd 475 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 33 47 - T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 SUPERFAMILY SSF52418 73 334 2.75E-89 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 11-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 437 45.254 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 PIRSF PIRSF000478 1 439 9.1E-149 T 11-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Gene3D G3DSA:1.20.970.10 7 195 1.3E-127 T 11-10-2018 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 SUPERFAMILY SSF54680 337 437 8.89E-29 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 1.5E-20 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 SUPERFAMILY SSF47648 2 70 4.32E-21 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Gene3D G3DSA:3.90.1170.30 337 431 1.7E-29 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Pfam PF00591 Glycosyl transferase family, a/b domain 80 309 9.0E-49 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 SMART SM00941 350 424 2.8E-28 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 3 427 4.8E-213 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 3.4E-159 T 11-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Gene3D G3DSA:3.40.1030.10 70 322 1.3E-127 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c23990 b68c07a7fcba3eaf00811e4dc83d9a98 442 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 423 8.8E-24 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11210 7732bd6a42566815ffef15124fb5244f 151 Pfam PF02391 MoaE protein 8 119 2.8E-38 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VV93_v1c11210 7732bd6a42566815ffef15124fb5244f 151 SUPERFAMILY SSF54690 4 149 1.83E-57 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VV93_v1c11210 7732bd6a42566815ffef15124fb5244f 151 Gene3D G3DSA:3.90.1170.40 1 149 3.3E-56 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 SUPERFAMILY SSF52540 146 389 1.21E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Gene3D G3DSA:3.40.50.2300 1 136 1.2E-32 T 11-10-2018 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 SMART SM00382 166 309 8.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Pfam PF02954 Bacterial regulatory protein, Fis family 417 457 8.9E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Pfam PF00072 Response regulator receiver domain 13 121 4.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 SUPERFAMILY SSF46689 359 456 1.33E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 SUPERFAMILY SSF52172 11 190 4.84E-41 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 SMART SM00448 10 121 1.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Gene3D G3DSA:3.40.50.300 137 317 3.7E-65 T 11-10-2018 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Gene3D G3DSA:1.10.10.60 412 455 5.4E-8 T 11-10-2018 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Gene3D G3DSA:1.10.8.60 318 398 3.3E-24 T 11-10-2018 VV93_v1c11140 6792031d273ab6a69f81331f9274643e 466 Pfam PF00158 Sigma-54 interaction domain 147 312 7.9E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Gene3D G3DSA:3.30.450.40 400 559 8.0E-6 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Gene3D G3DSA:1.10.3210.10 562 664 4.3E-19 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Gene3D G3DSA:1.10.3210.10 801 935 2.8E-29 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 SUPERFAMILY SSF55781 406 569 1.18E-5 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Gene3D G3DSA:3.30.450.20 158 222 5.3E-13 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Gene3D G3DSA:3.30.450.20 223 303 5.3E-13 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 SUPERFAMILY SSF109604 578 687 8.48E-7 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 SMART SM00471 583 892 1.3E-5 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Pfam PF13487 HD domain 809 874 2.9E-24 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 SUPERFAMILY SSF109604 810 918 5.02E-9 T 11-10-2018 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 Pfam PF02743 Cache domain 40 278 6.3E-13 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c32760 7a055263c4e724b5a26c9a203c16e85a 959 SUPERFAMILY SSF103190 157 232 1.96E-6 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c07520 469e675c3069e26d3980930cbe0fcbf5 157 Pfam PF04002 RadC-like JAB domain 38 155 2.3E-42 T 11-10-2018 IPR025657 RadC-like JAB domain VV93_v1c07520 469e675c3069e26d3980930cbe0fcbf5 157 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 107 112 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VV93_v1c07520 469e675c3069e26d3980930cbe0fcbf5 157 Gene3D G3DSA:3.40.140.10 35 157 1.3E-40 T 11-10-2018 VV93_v1c07520 469e675c3069e26d3980930cbe0fcbf5 157 SUPERFAMILY SSF102712 52 126 3.4E-6 T 11-10-2018 VV93_v1c07520 469e675c3069e26d3980930cbe0fcbf5 157 TIGRFAM TIGR00608 radc: DNA repair protein RadC 23 157 2.8E-42 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 VV93_v1c44370 3e03cbcefb80f0e35bcf41917a837b7b 450 Gene3D G3DSA:3.40.190.10 129 395 1.6E-57 T 11-10-2018 VV93_v1c44370 3e03cbcefb80f0e35bcf41917a837b7b 450 Gene3D G3DSA:3.40.190.10 39 340 1.6E-57 T 11-10-2018 VV93_v1c44370 3e03cbcefb80f0e35bcf41917a837b7b 450 SUPERFAMILY SSF53850 21 405 2.32E-62 T 11-10-2018 VV93_v1c44370 3e03cbcefb80f0e35bcf41917a837b7b 450 Pfam PF01547 Bacterial extracellular solute-binding protein 32 318 1.8E-34 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 498 2.1E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 Pfam PF00672 HAMP domain 204 249 9.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 SUPERFAMILY SSF58104 224 533 2.35E-72 T 11-10-2018 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 SMART SM01049 36 123 1.9E-21 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 SMART SM00304 257 309 57.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 SMART SM00304 204 256 3.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 Gene3D G3DSA:3.30.450.20 37 180 1.1E-31 T 11-10-2018 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 SMART SM00283 271 532 1.7E-68 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 Pfam PF17200 Single Cache domain 2 40 180 7.9E-29 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c23500 b2933908fbcd4c4e74d8c4285405b2ed 533 Gene3D G3DSA:1.10.287.950 204 533 7.8E-73 T 11-10-2018 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 SUPERFAMILY SSF48179 166 289 5.44E-39 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 SUPERFAMILY SSF51735 4 166 3.52E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 Gene3D G3DSA:1.10.1040.10 167 291 2.6E-38 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 162 1.2E-47 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 287 2.2E-32 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 Gene3D G3DSA:3.40.50.720 2 166 5.3E-50 T 11-10-2018 VV93_v1c34310 c84afaeb459708aef9f47d8cc7c76332 291 PIRSF PIRSF000103 1 291 5.2E-75 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 725 0.0 T 11-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Gene3D G3DSA:3.40.640.10 117 427 2.3E-83 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Gene3D G3DSA:3.90.1150.10 429 607 1.1E-67 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 SUPERFAMILY SSF55904 578 725 6.28E-44 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Gene3D G3DSA:3.90.100.10 608 726 6.6E-41 T 11-10-2018 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 583 711 2.4E-46 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 SUPERFAMILY SSF52172 1 116 5.47E-25 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 SUPERFAMILY SSF53383 117 574 5.69E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 PIRSF PIRSF009393 1 726 5.6E-287 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 19 111 4.7E-13 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 358 372 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Gene3D G3DSA:3.40.50.220 21 116 1.6E-12 T 11-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 VV93_v1c30700 f223fb75d118a17f5441ff344bcf046e 726 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 117 557 6.4E-187 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Gene3D G3DSA:2.60.40.1250 29 164 1.3E-40 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 205 404 1.2E-17 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 SUPERFAMILY SSF52833 480 595 8.2E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Pfam PF13899 Thioredoxin-like 489 567 1.8E-13 T 11-10-2018 VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Gene3D G3DSA:3.40.30.10 470 597 1.6E-32 T 11-10-2018 VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 SUPERFAMILY SSF74863 34 147 6.8E-41 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 597 38.376 T 11-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 Pfam PF11412 Disulphide bond corrector protein DsbC 36 146 5.0E-30 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VV93_v1c28420 662a763a5a98dc5835f43de9dd7deef6 598 ProSitePatterns PS00194 Thioredoxin family active site. 505 523 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 Gene3D G3DSA:1.10.287.470 90 176 2.4E-50 T 11-10-2018 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 367 3.1E-32 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 Gene3D G3DSA:2.40.50.100 56 216 2.4E-50 T 11-10-2018 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 Gene3D G3DSA:2.40.30.170 45 307 2.4E-50 T 11-10-2018 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 SUPERFAMILY SSF111369 49 231 1.02E-14 T 11-10-2018 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 Gene3D G3DSA:2.40.420.20 40 367 2.4E-50 T 11-10-2018 VV93_v1c44030 fe3c91becc00da8b03fd943c5b681e29 378 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 256 1.1E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c06400 7c46f07e5e1d389a6a0c8b911d122065 334 Pfam PF01551 Peptidase family M23 172 267 6.1E-30 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c06400 7c46f07e5e1d389a6a0c8b911d122065 334 SUPERFAMILY SSF51261 41 268 3.92E-54 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c06400 7c46f07e5e1d389a6a0c8b911d122065 334 Gene3D G3DSA:2.70.70.10 119 273 1.7E-41 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Gene3D G3DSA:1.20.120.140 4 305 3.5E-122 T 11-10-2018 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 SMART SM00962 100 296 6.1E-114 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 SUPERFAMILY SSF47446 329 430 1.08E-38 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.251 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 9.0E-74 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 SMART SM00382 99 247 2.2E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 SMART SM00963 1 86 1.1E-36 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 5.9E-22 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Gene3D G3DSA:1.10.260.30 328 452 3.5E-45 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 SUPERFAMILY SSF52540 42 353 2.1E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Gene3D G3DSA:3.40.50.300 90 285 3.5E-122 T 11-10-2018 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 1.8E-179 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 VV93_v1c25000 7a863519309dcbf9e5e98ba7c595d9b7 458 Pfam PF02978 Signal peptide binding domain 329 427 3.5E-34 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 VV93_v1c45500 3b890beec2016db7e75acab05ea059cd 119 SMART SM00448 2 115 3.0E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45500 3b890beec2016db7e75acab05ea059cd 119 SUPERFAMILY SSF52172 1 119 2.56E-38 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c45500 3b890beec2016db7e75acab05ea059cd 119 Pfam PF00072 Response regulator receiver domain 4 115 1.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45500 3b890beec2016db7e75acab05ea059cd 119 Gene3D G3DSA:3.40.50.12740 2 119 2.2E-38 T 11-10-2018 VV93_v1c37680 0afe2b8d1b6e8202e16ee200cc24dd9e 227 SUPERFAMILY SSF88713 1 225 1.26E-81 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VV93_v1c37680 0afe2b8d1b6e8202e16ee200cc24dd9e 227 Gene3D G3DSA:3.20.20.370 1 227 3.8E-89 T 11-10-2018 VV93_v1c37680 0afe2b8d1b6e8202e16ee200cc24dd9e 227 Pfam PF03746 LamB/YcsF family 1 224 3.2E-86 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 SUPERFAMILY SSF53383 1 423 2.3E-133 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 Gene3D G3DSA:3.40.640.10 69 317 1.0E-178 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 424 3.8E-193 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.172 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 Pfam PF00202 Aminotransferase class-III 33 395 1.4E-75 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c24430 94b94b28398eea24f948bc1157338087 431 Gene3D G3DSA:3.90.1150.10 6 418 1.0E-178 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c44990 3e4ad08f328de9917e88379478d0e507 497 Pfam PF00884 Sulfatase 4 354 1.3E-55 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c44990 3e4ad08f328de9917e88379478d0e507 497 Gene3D G3DSA:3.40.720.10 4 374 1.5E-82 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c44990 3e4ad08f328de9917e88379478d0e507 497 Gene3D G3DSA:3.30.1120.10 400 482 1.6E-11 T 11-10-2018 VV93_v1c44990 3e4ad08f328de9917e88379478d0e507 497 SUPERFAMILY SSF53649 2 472 8.37E-86 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 31.851 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 Pfam PF01197 Ribosomal protein L31 1 66 5.0E-32 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.1E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 PRINTS PR01249 Ribosomal protein L31 signature 32 47 7.1E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 PRINTS PR01249 Ribosomal protein L31 signature 47 65 7.1E-23 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 Gene3D G3DSA:2.30.170.50 1 71 1.1E-32 T 11-10-2018 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 SUPERFAMILY SSF143800 1 68 1.57E-27 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27390 f88522e7e0a3de119e15fc5aadb757c7 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 5.5E-35 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c04930 d47473eaccdc12c187c18237b2d6914c 112 PIRSF PIRSF031804 1 112 1.5E-41 T 11-10-2018 IPR016983 Uncharacterised conserved protein UCP031804 VV93_v1c04930 d47473eaccdc12c187c18237b2d6914c 112 Pfam PF06803 Protein of unknown function (DUF1232) 50 85 3.3E-13 T 11-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Gene3D G3DSA:3.30.70.2120 174 274 3.2E-77 T 11-10-2018 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Pfam PF00700 Bacterial flagellin C-terminal helical region 291 375 4.3E-26 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Gene3D G3DSA:1.20.1330.10 44 326 3.2E-77 T 11-10-2018 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Pfam PF07196 Flagellin hook IN motif 193 248 1.3E-11 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Gene3D G3DSA:1.10.8.410 327 375 2.5E-20 T 11-10-2018 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.5E-42 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 SUPERFAMILY SSF64518 1 375 5.23E-96 T 11-10-2018 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 PRINTS PR00207 Flagellin signature 37 54 3.4E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 PRINTS PR00207 Flagellin signature 76 95 3.4E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21930 01b8662458cd39ea5621531dfab606e6 376 PRINTS PR00207 Flagellin signature 111 134 3.4E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 SUPERFAMILY SSF46992 3 86 2.62E-32 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 86 8.0E-36 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 Pfam PF01649 Ribosomal protein S20 2 84 1.4E-27 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.607 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 Gene3D G3DSA:1.20.58.110 1 86 1.3E-29 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c06240 02f35510c1918f3841e4ed957ba17894 86 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 8.3E-32 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c07950 528b61449e07f766747037abeec2b4f8 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 5 414 8.9E-234 T 11-10-2018 IPR010520 UPF0255 family VV93_v1c07950 528b61449e07f766747037abeec2b4f8 415 Gene3D G3DSA:3.40.50.1820 18 415 1.6E-120 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c07950 528b61449e07f766747037abeec2b4f8 415 SUPERFAMILY SSF53474 46 410 2.37E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c07950 528b61449e07f766747037abeec2b4f8 415 Hamap MF_01063 Esterase FrsA [frsA]. 4 415 53.707 T 11-10-2018 IPR010520 UPF0255 family VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 SUPERFAMILY SSF53850 95 300 5.12E-38 T 11-10-2018 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 Gene3D G3DSA:3.40.190.10 98 297 6.6E-58 T 11-10-2018 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 Pfam PF03466 LysR substrate binding domain 94 300 1.5E-38 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 Gene3D G3DSA:1.10.10.10 9 95 3.7E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 SUPERFAMILY SSF46785 11 91 4.79E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 3.5E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32860 83d17bad933909d7eac5c44bcc5e0595 303 Gene3D G3DSA:3.40.190.10 169 270 6.6E-58 T 11-10-2018 VV93_v1c25840 fd869186248617da1c587d79ecfffb0f 143 Pfam PF14467 Domain of unknown function (DUF4426) 23 142 2.7E-47 T 11-10-2018 IPR025218 Domain of unknown function DUF4426 VV93_v1c25840 fd869186248617da1c587d79ecfffb0f 143 Gene3D G3DSA:2.60.40.3340 14 143 6.5E-39 T 11-10-2018 VV93_v1c10940 a2ecc41c6edd10d03f0e885e3f776d53 212 Pfam PF01914 MarC family integral membrane protein 8 208 5.3E-65 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c10940 a2ecc41c6edd10d03f0e885e3f776d53 212 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 6 204 4.6E-66 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c43020 dae64afce704b8d4c2e46e192a4ee508 460 Gene3D G3DSA:1.20.58.710 186 296 2.6E-59 T 11-10-2018 VV93_v1c43020 dae64afce704b8d4c2e46e192a4ee508 460 SUPERFAMILY SSF56601 80 441 2.09E-52 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c43020 dae64afce704b8d4c2e46e192a4ee508 460 Gene3D G3DSA:3.40.710.10 138 436 2.6E-59 T 11-10-2018 VV93_v1c43020 dae64afce704b8d4c2e46e192a4ee508 460 Pfam PF00144 Beta-lactamase 142 434 1.6E-25 T 11-10-2018 IPR001466 Beta-lactamase-related VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 Pfam PF03466 LysR substrate binding domain 89 293 2.9E-42 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 Gene3D G3DSA:1.10.10.10 1 92 3.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 Gene3D G3DSA:3.40.190.10 93 290 6.0E-72 T 11-10-2018 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 SUPERFAMILY SSF46785 1 112 5.9E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 Gene3D G3DSA:3.40.190.10 163 267 6.0E-72 T 11-10-2018 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c19000 e5245aaa05521e51688bfbb34f9f680a 303 SUPERFAMILY SSF53850 89 296 2.85E-40 T 11-10-2018 VV93_v1c06410 4d5e7f9ffcbafe4e6e10f41683464fd2 124 Gene3D G3DSA:2.40.10.220 1 123 5.0E-32 T 11-10-2018 VV93_v1c06410 4d5e7f9ffcbafe4e6e10f41683464fd2 124 PIRSF PIRSF028141 1 120 3.6E-43 T 11-10-2018 IPR027021 Cyclic di-GMP binding protein, PA4608 type VV93_v1c06410 4d5e7f9ffcbafe4e6e10f41683464fd2 124 Pfam PF07238 PilZ domain 3 100 3.2E-15 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c06410 4d5e7f9ffcbafe4e6e10f41683464fd2 124 SUPERFAMILY SSF141371 1 120 2.55E-33 T 11-10-2018 VV93_v1c22390 63904c8cdc64ac5c56190d86da152a0e 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.298 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VV93_v1c22390 63904c8cdc64ac5c56190d86da152a0e 208 SUPERFAMILY SSF53271 3 206 2.49E-66 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c22390 63904c8cdc64ac5c56190d86da152a0e 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 3.1E-64 T 11-10-2018 VV93_v1c22390 63904c8cdc64ac5c56190d86da152a0e 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 2 208 7.7E-92 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 VV93_v1c22390 63904c8cdc64ac5c56190d86da152a0e 208 Gene3D G3DSA:3.40.50.2020 1 208 4.8E-73 T 11-10-2018 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 54 2.7E-20 T 11-10-2018 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 Gene3D G3DSA:1.10.10.10 2 58 3.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 SMART SM00344 7 116 2.3E-43 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 Gene3D G3DSA:3.30.70.920 59 153 2.3E-24 T 11-10-2018 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 SUPERFAMILY SSF54909 69 155 1.47E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 Pfam PF01037 Lrp/AsnC ligand binding domain 73 145 3.3E-21 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.0E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.0E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.0E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c41430 a31588d1d669852bfb58cbdebd7e9e74 159 SUPERFAMILY SSF46785 6 66 1.79E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 PIRSF PIRSF000429 1 387 1.7E-131 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.441 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 Gene3D G3DSA:3.40.47.10 134 381 6.2E-152 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 SUPERFAMILY SSF53901 1 259 3.93E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 5.1E-83 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 1.7E-142 T 11-10-2018 IPR002155 Thiolase GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 9.7E-50 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 Gene3D G3DSA:3.40.47.10 4 267 6.2E-152 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 8.2E-245 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 SUPERFAMILY SSF53901 263 386 1.12E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c00170 a02572bdd5f233c19755150d850febf6 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 VV93_v1c36370 19a8d2f77bbf4fcb851d34206fe7f858 603 Pfam PF08308 PEGA domain 295 359 1.3E-24 T 11-10-2018 IPR013229 PEGA VV93_v1c36370 19a8d2f77bbf4fcb851d34206fe7f858 603 Gene3D G3DSA:3.90.1580.10 380 601 1.2E-55 T 11-10-2018 VV93_v1c36370 19a8d2f77bbf4fcb851d34206fe7f858 603 SUPERFAMILY SSF56436 379 601 2.83E-57 T 11-10-2018 IPR016187 C-type lectin fold VV93_v1c36370 19a8d2f77bbf4fcb851d34206fe7f858 603 Pfam PF03781 Sulfatase-modifying factor enzyme 1 382 601 2.9E-50 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SUPERFAMILY SSF47384 445 527 3.73E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SMART SM00387 573 684 1.9E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Pfam PF00989 PAS fold 877 926 6.1E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Pfam PF00072 Response regulator receiver domain 726 837 3.8E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 623 3.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 681 3.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 637 3.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 662 3.0E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SMART SM00304 377 430 2.2E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SUPERFAMILY SSF55874 516 688 4.98E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SUPERFAMILY SSF158472 378 428 6.8E-11 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SMART SM00448 723 836 8.6E-45 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:3.40.50.2300 723 863 6.7E-41 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:3.30.565.10 526 688 1.8E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:3.30.450.20 864 956 2.9E-8 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Pfam PF00512 His Kinase A (phospho-acceptor) domain 460 525 1.5E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 574 683 4.2E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:3.30.450.20 258 358 4.8E-7 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SMART SM00091 874 939 2.4E-5 T 11-10-2018 IPR000014 PAS domain VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:1.10.8.500 376 427 2.0E-16 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SMART SM00388 459 527 1.2E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Pfam PF00672 HAMP domain 379 427 8.8E-12 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 Gene3D G3DSA:1.10.287.130 428 525 1.3E-22 T 11-10-2018 VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SUPERFAMILY SSF52172 719 841 4.7E-41 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c24460 2701ecbed0487a76ea3453140f023ded 1129 SUPERFAMILY SSF55785 861 930 8.03E-9 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 PIRSF PIRSF000850 2 446 4.4E-214 T 11-10-2018 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 Pfam PF13091 PLD-like domain 34 146 2.4E-7 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 Pfam PF13091 PLD-like domain 252 402 1.2E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 SUPERFAMILY SSF56024 8 179 2.15E-27 T 11-10-2018 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 Gene3D G3DSA:3.30.870.10 12 441 5.0E-167 T 11-10-2018 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 SMART SM00155 126 152 5.3E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 SMART SM00155 347 374 0.0047 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 Gene3D G3DSA:3.30.870.10 18 225 5.0E-167 T 11-10-2018 VV93_v1c28880 aacdbf44ede3a6b7826f4cce253fe5cc 446 SUPERFAMILY SSF56024 248 392 1.05E-25 T 11-10-2018 VV93_v1c42890 c096018bd5034524dc72971a8fa4263c 388 Pfam PF14583 Oligogalacturonate lyase 1 386 7.4E-253 T 11-10-2018 IPR027946 Oligogalacturonate lyase domain GO:0045490|GO:0047487 KEGG: 00040+4.2.2.6 VV93_v1c42890 c096018bd5034524dc72971a8fa4263c 388 SUPERFAMILY SSF82171 27 384 1.44E-24 T 11-10-2018 VV93_v1c42890 c096018bd5034524dc72971a8fa4263c 388 Gene3D G3DSA:2.130.10.10 1 388 8.2E-165 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 Pfam PF01039 Carboxyl transferase domain 99 240 1.1E-14 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 Gene3D G3DSA:3.90.226.10 25 285 4.2E-83 T 11-10-2018 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 8.9E-140 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 SUPERFAMILY SSF52096 25 282 2.36E-85 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 37.393 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.6E-38 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.6E-38 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.6E-38 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.6E-38 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c21270 8fc8e5f9c5c72b071078fb14020ba203 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.6E-38 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c04040 95476a537544956f00086d23ff845714 535 SUPERFAMILY SSF161098 15 257 3.79E-41 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c04040 95476a537544956f00086d23ff845714 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 257 2.8E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c04040 95476a537544956f00086d23ff845714 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 364 512 4.2E-6 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c04040 95476a537544956f00086d23ff845714 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 516 4.4E-162 T 11-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 VV93_v1c04040 95476a537544956f00086d23ff845714 535 Gene3D G3DSA:1.10.3720.10 6 259 2.4E-42 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c04040 95476a537544956f00086d23ff845714 535 Gene3D G3DSA:1.10.3720.10 281 530 9.2E-27 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c04040 95476a537544956f00086d23ff845714 535 SUPERFAMILY SSF161098 280 518 2.88E-29 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 Gene3D G3DSA:1.10.150.130 108 214 5.1E-29 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 SUPERFAMILY SSF56349 106 386 1.03E-58 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 Gene3D G3DSA:1.10.443.10 215 388 1.5E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 Pfam PF13356 Arm DNA-binding domain 8 95 1.5E-20 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 Pfam PF00589 Phage integrase family 214 376 1.9E-26 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c07580 8128d2cc8f24eed3ac8ef186006bde6d 413 Gene3D G3DSA:3.30.160.390 6 107 1.0E-32 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 TIGRFAM TIGR00016 ackA: acetate kinase 2 396 8.4E-143 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 SUPERFAMILY SSF53067 158 396 1.38E-78 T 11-10-2018 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 Pfam PF00871 Acetokinase family 6 391 1.3E-140 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 SUPERFAMILY SSF53067 5 196 9.06E-62 T 11-10-2018 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 Gene3D G3DSA:3.30.420.40 197 397 6.4E-72 T 11-10-2018 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PIRSF PIRSF000722 2 397 3.1E-133 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 378 390 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 203 224 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 299 312 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 6 17 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 173 186 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 PRINTS PR00471 Acetate kinase family signature 321 337 8.9E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 Hamap MF_00020 Acetate kinase [ackA]. 1 397 167.21 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 VV93_v1c36590 679d07187acb265b6f97a79d18696e7a 397 Gene3D G3DSA:3.30.420.40 3 195 1.5E-65 T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 Pfam PF13377 Periplasmic binding protein-like domain 168 308 8.2E-19 T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 1.7E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 SMART SM00354 4 74 2.0E-29 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 310 2.7E-134 T 11-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 Gene3D G3DSA:3.40.50.2300 163 279 5.7E-64 T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 Gene3D G3DSA:1.10.260.40 2 60 1.3E-19 T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 SUPERFAMILY SSF47413 3 60 2.51E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 Gene3D G3DSA:3.40.50.2300 68 303 5.7E-64 T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 11-10-2018 VV93_v1c08310 9a586b4ca2fc27739f28b1d629d3e79c 315 SUPERFAMILY SSF53822 63 308 5.1E-61 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c12680 61aec7809a86773a4f27fe7ea9730b56 245 Gene3D G3DSA:3.20.20.70 1 245 4.4E-89 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c12680 61aec7809a86773a4f27fe7ea9730b56 245 Pfam PF00977 Histidine biosynthesis protein 2 234 1.3E-75 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 VV93_v1c12680 61aec7809a86773a4f27fe7ea9730b56 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 1.2E-77 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VV93_v1c12680 61aec7809a86773a4f27fe7ea9730b56 245 SUPERFAMILY SSF51366 2 242 3.63E-63 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c12680 61aec7809a86773a4f27fe7ea9730b56 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 34.571 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 Pfam PF00326 Prolyl oligopeptidase family 459 673 2.8E-68 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 SUPERFAMILY SSF50993 2 407 5.23E-94 T 11-10-2018 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 SUPERFAMILY SSF53474 411 652 1.93E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 504 534 - T 11-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 Gene3D G3DSA:2.130.10.120 70 403 1.7E-244 T 11-10-2018 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 527 547 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 602 624 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 443 461 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 516 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 583 598 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 469 493 1.7E-60 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 Gene3D G3DSA:3.40.50.1820 12 642 1.7E-244 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c41820 ff1a4be631302d2644dc37ad82002287 678 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 6 401 3.5E-115 T 11-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 16 102 2.7E-20 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 17 103 3.8E-30 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 103 16.986 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 3.9E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 3.9E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c21850 14957a5da33ee8fbf1fcd77d4bfd4d61 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 3.9E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 69 314 7.4E-48 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 Gene3D G3DSA:1.10.40.50 261 331 3.1E-22 T 11-10-2018 VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 35 322 31.706 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 Pfam PF03193 RsgA GTPase 85 258 6.6E-49 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 SUPERFAMILY SSF52540 103 319 3.02E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30800 90b50cbb7a37db4bdd81725de128c3b0 353 Gene3D G3DSA:3.40.50.300 87 258 3.8E-44 T 11-10-2018 VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 16 196 1.2E-61 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 Pfam PF03602 Conserved hypothetical protein 95 19 195 9.5E-63 T 11-10-2018 VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 SUPERFAMILY SSF53335 19 195 5.08E-56 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 Gene3D G3DSA:3.40.50.150 6 197 5.3E-65 T 11-10-2018 VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 131 137 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c01000 315db0fadeb7a94d91df6791d4181ff5 197 PIRSF PIRSF004553 18 197 5.8E-56 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 PRINTS PR00313 NodO calcium binding signature 31 42 2.4E-12 T 11-10-2018 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 PRINTS PR00313 NodO calcium binding signature 70 78 2.4E-12 T 11-10-2018 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 PRINTS PR00313 NodO calcium binding signature 106 115 2.4E-12 T 11-10-2018 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 PRINTS PR00313 NodO calcium binding signature 43 51 2.4E-12 T 11-10-2018 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 79 95 4.3 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 25 41 5.1 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 97 112 0.059 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 42 59 0.0012 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 61 77 1.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 57 75 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 39 57 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 SUPERFAMILY SSF51120 6 168 9.59E-25 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Gene3D G3DSA:2.150.10.10 3 62 2.5E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c33710 8dbd03c64fc22b452d68dd30983869f1 190 Gene3D G3DSA:2.150.10.10 63 187 2.0E-18 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 SUPERFAMILY SSF51338 35 578 1.82E-17 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 SUPERFAMILY SSF51556 97 538 7.46E-26 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 Gene3D G3DSA:3.20.20.140 98 537 5.0E-134 T 11-10-2018 VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 Gene3D G3DSA:2.30.40.10 44 555 5.0E-134 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 Gene3D G3DSA:3.10.310.70 116 245 5.0E-134 T 11-10-2018 VV93_v1c10600 6a1ddf1fb440234e4c48a772641d851e 583 Pfam PF07969 Amidohydrolase family 86 578 4.3E-119 T 11-10-2018 IPR013108 Amidohydrolase 3 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 Pfam PF01979 Amidohydrolase family 51 374 3.1E-41 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 SUPERFAMILY SSF51338 1 53 7.83E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 SUPERFAMILY SSF51556 54 347 3.66E-102 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 Gene3D G3DSA:3.20.20.140 55 341 1.4E-144 T 11-10-2018 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 PIRSF PIRSF038994 1 378 5.1E-123 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 Gene3D G3DSA:2.30.40.10 6 373 1.4E-144 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c09340 91ab72c7764e85b906aef2f58bebeb9f 378 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 374 2.3E-156 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Gene3D G3DSA:2.60.40.10 302 423 2.7E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Pfam PF14310 Fibronectin type III-like domain 329 404 5.8E-17 T 11-10-2018 IPR026891 Fibronectin type III-like domain VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 SUPERFAMILY SSF51445 496 853 3.68E-75 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 25 264 1.0E-41 T 11-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 SUPERFAMILY SSF52279 25 288 5.75E-34 T 11-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 712 729 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 SMART SM01217 329 405 4.7E-22 T 11-10-2018 IPR026891 Fibronectin type III-like domain VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 502 796 2.1E-59 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 PRINTS PR00133 Glycosyl hydrolase family 3 signature 712 730 6.5E-28 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 PRINTS PR00133 Glycosyl hydrolase family 3 signature 565 584 6.5E-28 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 PRINTS PR00133 Glycosyl hydrolase family 3 signature 611 627 6.5E-28 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 PRINTS PR00133 Glycosyl hydrolase family 3 signature 539 555 6.5E-28 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 PRINTS PR00133 Glycosyl hydrolase family 3 signature 642 658 6.5E-28 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Gene3D G3DSA:3.40.50.1700 10 286 3.6E-74 T 11-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 VV93_v1c31440 4861050001cf63b205f706a4eb6c6645 933 Gene3D G3DSA:3.20.20.300 494 806 6.7E-85 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SMART SM00955 193 523 2.9E-115 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SUPERFAMILY SSF50249 568 649 1.14E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Pfam PF00575 S1 RNA binding domain 568 645 8.7E-9 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SMART SM00316 566 650 6.8E-5 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 ProSitePatterns PS01175 Ribonuclease II family signature. 490 514 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SUPERFAMILY SSF50249 186 563 4.23E-108 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SMART SM00357 23 79 3.8E-9 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Pfam PF08206 Ribonuclease B OB domain 24 80 1.0E-17 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Gene3D G3DSA:2.40.50.140 1 82 1.0E-27 T 11-10-2018 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 649 0.0 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SUPERFAMILY SSF50249 83 173 7.78E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 648 6.5E-185 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Gene3D G3DSA:2.40.50.140 566 651 9.3E-33 T 11-10-2018 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Pfam PF00773 RNB domain 193 521 2.4E-87 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 650 43.087 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 SUPERFAMILY SSF50249 8 80 1.86E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c36570 387b7f6234d103e6c020fd6307b35977 664 Gene3D G3DSA:2.40.50.640 83 157 1.3E-30 T 11-10-2018 VV93_v1c39550 08e757f1cb9e428dc2e17c9d100c479b 297 Gene3D G3DSA:1.20.1510.10 9 214 9.0E-21 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c39550 08e757f1cb9e428dc2e17c9d100c479b 297 SUPERFAMILY SSF161111 7 214 3.66E-33 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c39550 08e757f1cb9e428dc2e17c9d100c479b 297 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 281 1.6E-26 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c39550 08e757f1cb9e428dc2e17c9d100c479b 297 Pfam PF01545 Cation efflux family 14 214 1.8E-32 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c43260 b40485c65c37683b106898cbc309e679 133 Pfam PF00293 NUDIX domain 5 117 2.4E-14 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c43260 b40485c65c37683b106898cbc309e679 133 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c43260 b40485c65c37683b106898cbc309e679 133 SUPERFAMILY SSF55811 2 126 3.38E-26 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c43260 b40485c65c37683b106898cbc309e679 133 Gene3D G3DSA:3.90.79.10 4 131 2.1E-23 T 11-10-2018 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 SUPERFAMILY SSF47384 412 482 4.71E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 62 168 2.1E-32 T 11-10-2018 IPR033414 Periplasmic sensor domain VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 SUPERFAMILY SSF55874 489 652 8.12E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 596 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 651 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 613 631 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 610 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 Gene3D G3DSA:1.10.287.130 393 494 1.5E-18 T 11-10-2018 VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 SMART SM00387 542 654 2.5E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 653 5.9E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c39600 97dfd5dfb8a50bebde401aeb5604626f 665 Gene3D G3DSA:3.30.565.10 499 656 2.0E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 110 269 3.0E-55 T 11-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Gene3D G3DSA:3.10.650.10 108 277 2.1E-49 T 11-10-2018 VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Gene3D G3DSA:2.40.430.10 128 213 2.1E-49 T 11-10-2018 VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Gene3D G3DSA:1.20.58.370 18 105 2.2E-33 T 11-10-2018 IPR035277 MalF, N-terminal VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 306 511 5.9E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 SUPERFAMILY SSF161098 271 512 2.49E-58 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 SUPERFAMILY SSF160964 24 269 6.8E-83 T 11-10-2018 VV93_v1c33850 d7a8683ca92f9b93ba47bf627bdfacff 523 Gene3D G3DSA:1.10.3720.10 279 521 1.4E-68 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 Gene3D G3DSA:3.40.190.10 92 264 1.4E-6 T 11-10-2018 VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 Pfam PF03466 LysR substrate binding domain 90 276 9.7E-13 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 SUPERFAMILY SSF53850 90 279 9.59E-18 T 11-10-2018 VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 Gene3D G3DSA:3.40.190.10 161 251 1.4E-6 T 11-10-2018 VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.1E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 Gene3D G3DSA:1.10.10.10 2 87 5.4E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c05710 f1801618b33d94ff143ea1134b44ddc5 281 SUPERFAMILY SSF46785 3 77 2.72E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32450 c0f4ab5f4aa0ad34f8bcd108015972e9 200 Pfam PF01323 DSBA-like thioredoxin domain 41 189 2.4E-22 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 VV93_v1c32450 c0f4ab5f4aa0ad34f8bcd108015972e9 200 Gene3D G3DSA:3.40.30.10 18 200 1.5E-51 T 11-10-2018 VV93_v1c32450 c0f4ab5f4aa0ad34f8bcd108015972e9 200 SUPERFAMILY SSF52833 23 198 4.29E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c32450 c0f4ab5f4aa0ad34f8bcd108015972e9 200 ProSitePatterns PS00194 Thioredoxin family active site. 42 60 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c32450 c0f4ab5f4aa0ad34f8bcd108015972e9 200 PIRSF PIRSF001488 2 200 7.4E-63 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VV93_v1c09210 d30b5e63466b9387ab959d99e70fe8c6 92 Pfam PF10262 Rdx family 5 78 2.2E-33 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type VV93_v1c09210 d30b5e63466b9387ab959d99e70fe8c6 92 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 6 78 7.3E-24 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type VV93_v1c09210 d30b5e63466b9387ab959d99e70fe8c6 92 SUPERFAMILY SSF52833 4 87 3.35E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c09210 d30b5e63466b9387ab959d99e70fe8c6 92 Gene3D G3DSA:3.40.30.10 2 92 6.8E-42 T 11-10-2018 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 Gene3D G3DSA:3.30.1240.10 86 191 6.7E-81 T 11-10-2018 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 262 1.7E-67 T 11-10-2018 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 Gene3D G3DSA:3.40.50.1000 3 263 6.7E-81 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 SUPERFAMILY SSF56784 1 267 5.01E-77 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 262 4.5E-62 T 11-10-2018 IPR000150 Cof family GO:0016787 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 235 2.0E-25 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 11-10-2018 VV93_v1c14450 9f7f677998760daecc5b182e25924675 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-10-2018 VV93_v1c13980 159fc714003b1942e576272e51978715 364 Pfam PF05971 Protein of unknown function (DUF890) 42 352 4.7E-122 T 11-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 VV93_v1c13980 159fc714003b1942e576272e51978715 364 SUPERFAMILY SSF53335 80 351 2.6E-27 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c13980 159fc714003b1942e576272e51978715 364 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 42 354 53.078 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VV93_v1c13980 159fc714003b1942e576272e51978715 364 PIRSF PIRSF029038 31 364 1.1E-157 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 VV93_v1c13980 159fc714003b1942e576272e51978715 364 Gene3D G3DSA:3.40.50.150 75 352 2.9E-73 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Gene3D G3DSA:3.90.700.10 237 363 7.2E-163 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 1.5E-37 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 SUPERFAMILY SSF46977 444 582 9.03E-43 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.0E-9 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.0E-9 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Gene3D G3DSA:3.50.50.60 7 409 7.2E-163 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c28200 4922c568f20539545a355063c71eb246 605 PIRSF PIRSF000171 1 575 1.1E-44 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 SUPERFAMILY SSF51905 3 439 2.74E-74 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c28200 4922c568f20539545a355063c71eb246 605 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 4.4E-236 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 8.5E-5 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 8.5E-5 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Gene3D G3DSA:1.20.58.100 424 538 1.1E-34 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 4 582 0.0 T 11-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Gene3D G3DSA:4.10.80.40 543 577 2.6E-15 T 11-10-2018 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 Pfam PF00890 FAD binding domain 7 397 2.9E-114 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28200 4922c568f20539545a355063c71eb246 605 SUPERFAMILY SSF56425 227 358 3.74E-41 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 Gene3D G3DSA:3.40.50.300 289 565 3.7E-99 T 11-10-2018 VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 SUPERFAMILY SSF52540 170 559 4.14E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 Gene3D G3DSA:3.30.450.90 147 286 4.1E-43 T 11-10-2018 VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 SUPERFAMILY SSF160246 3 145 3.92E-39 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 Gene3D G3DSA:3.30.300.160 63 145 5.5E-6 T 11-10-2018 VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 381 395 - T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 42 148 3.0E-23 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 SMART SM00382 314 435 2.3E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c26670 b41823e75d742ee16fab9d0f80fa14a4 574 Pfam PF00437 Type II/IV secretion system protein 189 453 8.8E-77 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 SUPERFAMILY SSF54995 1 103 1.09E-38 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 Pfam PF01250 Ribosomal protein S6 3 91 1.1E-28 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 6.8E-39 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 Gene3D G3DSA:3.30.70.60 1 92 4.5E-33 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 11-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c27130 0b1b4134655f24e543ef93502f8e2470 123 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 22.04 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 11-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 Gene3D G3DSA:1.10.275.10 2 197 4.5E-71 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 Gene3D G3DSA:1.20.200.10 198 509 1.0E-123 T 11-10-2018 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 Pfam PF00221 Aromatic amino acid lyase 11 471 4.9E-188 T 11-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 SUPERFAMILY SSF48557 5 508 5.26E-193 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 503 6.2E-216 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17120 b7718191d41d5f21f48c6cb639fae35e 512 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.484 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 SUPERFAMILY SSF52540 25 256 1.98E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 182.417 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 16 240 1.8E-116 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Gene3D G3DSA:1.10.10.10 262 334 4.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 258 331 1.3E-33 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Gene3D G3DSA:1.10.8.60 187 260 2.1E-30 T 11-10-2018 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 331 2.3E-146 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 255 332 4.0E-39 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 Gene3D G3DSA:3.40.50.300 25 186 3.9E-41 T 11-10-2018 VV93_v1c19940 7e6084bf93312687699a164634854e67 334 SUPERFAMILY SSF46785 262 332 2.39E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c19940 7e6084bf93312687699a164634854e67 334 SMART SM00382 56 189 2.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 Pfam PF00444 Ribosomal protein L36 1 37 9.4E-19 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.137 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 SUPERFAMILY SSF57840 1 37 1.02E-16 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 4.0E-23 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03670 756d9a7dbdd6c76983597e7873ac5986 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 3.0E-9 T 11-10-2018 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.9E-28 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 PIRSF PIRSF002599 1 73 3.1E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 1.3E-40 T 11-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 Gene3D G3DSA:2.40.50.140 1 65 1.7E-25 T 11-10-2018 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 SMART SM00357 3 67 1.3E-24 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 PRINTS PR00050 Cold shock protein signature 4 19 1.4E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 PRINTS PR00050 Cold shock protein signature 40 58 1.4E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 PRINTS PR00050 Cold shock protein signature 25 34 1.4E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c20340 74516f44e3fec93b3e347ebe97d83173 73 SUPERFAMILY SSF50249 1 67 7.28E-23 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c44330 2e2846b1b77fcbe1fa826432d77615c2 151 Pfam PF01641 SelR domain 28 144 9.1E-46 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c44330 2e2846b1b77fcbe1fa826432d77615c2 151 Gene3D G3DSA:2.170.150.20 6 150 4.2E-52 T 11-10-2018 VV93_v1c44330 2e2846b1b77fcbe1fa826432d77615c2 151 SUPERFAMILY SSF51316 22 148 1.1E-51 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c44330 2e2846b1b77fcbe1fa826432d77615c2 151 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 24 149 9.2E-49 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c23130 27bf0d438d536f8c524bfd313c25fde7 466 Pfam PF07690 Major Facilitator Superfamily 24 342 6.3E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c23130 27bf0d438d536f8c524bfd313c25fde7 466 Gene3D G3DSA:1.20.1250.20 248 440 3.0E-9 T 11-10-2018 VV93_v1c23130 27bf0d438d536f8c524bfd313c25fde7 466 SUPERFAMILY SSF103473 9 438 4.71E-39 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c23130 27bf0d438d536f8c524bfd313c25fde7 466 Gene3D G3DSA:1.20.1250.20 12 223 4.7E-12 T 11-10-2018 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 120 206 19.599 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 61 110 8.0E-24 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 123 210 5.0E-18 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Gene3D G3DSA:1.10.287.1080 120 211 7.4E-30 T 11-10-2018 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 38 110 1.7E-31 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Gene3D G3DSA:3.10.20.400 4 102 6.3E-36 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 13 211 37.704 T 11-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 123 206 7.5E-32 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 SUPERFAMILY SSF141734 14 124 8.24E-46 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 VV93_v1c12700 7fbe0343402029bebf518ed10bc46f81 211 SUPERFAMILY SSF101386 123 210 2.06E-25 T 11-10-2018 VV93_v1c38130 0b4c824075919c64e439364c07507d3e 51 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 51 1.0E-11 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 VV93_v1c38130 0b4c824075919c64e439364c07507d3e 51 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 1.5E-25 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 VV93_v1c38130 0b4c824075919c64e439364c07507d3e 51 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 51 18.917 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Gene3D G3DSA:3.40.250.10 384 482 1.6E-11 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 3.1E-70 T 11-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 SUPERFAMILY SSF52402 174 372 1.01E-40 T 11-10-2018 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 220.348 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Pfam PF02926 THUMP domain 59 158 1.6E-22 T 11-10-2018 IPR004114 THUMP domain GO:0003723 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 SUPERFAMILY SSF52821 401 481 2.49E-12 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Gene3D G3DSA:3.30.2130.30 1 174 2.4E-32 T 11-10-2018 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 382 482 3.7E-42 T 11-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 376 1.6E-110 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 SUPERFAMILY SSF143437 1 173 9.77E-47 T 11-10-2018 VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 Gene3D G3DSA:3.40.50.620 175 383 6.5E-48 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c08120 5098ba39c9ba3e14dc698a1117e694d5 482 SMART SM00981 75 165 1.9E-23 T 11-10-2018 IPR004114 THUMP domain GO:0003723 VV93_v1c09630 be745583b2302a6e41887644601a8fd7 61 Pfam PF04023 FeoA domain 6 59 2.0E-11 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VV93_v1c09630 be745583b2302a6e41887644601a8fd7 61 Gene3D G3DSA:2.30.30.90 1 61 7.5E-21 T 11-10-2018 IPR038157 Ferrous iron transporter, core domain VV93_v1c09630 be745583b2302a6e41887644601a8fd7 61 SUPERFAMILY SSF50037 6 59 9.39E-15 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal VV93_v1c09630 be745583b2302a6e41887644601a8fd7 61 SMART SM00899 1 60 1.2E-8 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 6.2E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 35 50 6.2E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 6.2E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 Gene3D G3DSA:2.40.100.10 18 181 5.7E-59 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 PIRSF PIRSF001467 5 179 2.0E-24 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 178 4.3E-45 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 VV93_v1c23120 4357c09a1c831a8fa9117ca7fe723201 181 SUPERFAMILY SSF50891 19 180 5.26E-55 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 SUPERFAMILY SSF52540 1 231 8.79E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 SMART SM00382 24 207 1.2E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 5.6E-102 T 11-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 Pfam PF00005 ABC transporter 18 157 3.7E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c04050 6cf118f98aedc0a04737343a15d2fd35 234 Gene3D G3DSA:3.40.50.300 1 234 5.0E-65 T 11-10-2018 VV93_v1c17170 ad66b67a5dfde7b4a7973f184b73f11e 229 Pfam PF11813 Protein of unknown function (DUF3334) 4 229 5.6E-116 T 11-10-2018 IPR024513 Protein of unknown function DUF3334 VV93_v1c17170 ad66b67a5dfde7b4a7973f184b73f11e 229 SUPERFAMILY SSF103039 10 173 2.09E-24 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c17170 ad66b67a5dfde7b4a7973f184b73f11e 229 Gene3D G3DSA:3.40.1550.10 8 173 4.3E-20 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c39610 24051539e050e729721a0117a435f753 513 SUPERFAMILY SSF109604 324 500 8.48E-39 T 11-10-2018 VV93_v1c39610 24051539e050e729721a0117a435f753 513 Pfam PF01966 HD domain 340 461 1.3E-18 T 11-10-2018 IPR006674 HD domain VV93_v1c39610 24051539e050e729721a0117a435f753 513 SUPERFAMILY SSF52172 24 158 2.42E-12 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c39610 24051539e050e729721a0117a435f753 513 Pfam PF11849 Domain of unknown function (DUF3369) 148 313 1.8E-44 T 11-10-2018 IPR021800 Domain of unknown function DUF3369 VV93_v1c39610 24051539e050e729721a0117a435f753 513 Gene3D G3DSA:1.10.3210.10 314 513 3.0E-69 T 11-10-2018 VV93_v1c39610 24051539e050e729721a0117a435f753 513 SMART SM00471 334 471 5.6E-4 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c39610 24051539e050e729721a0117a435f753 513 Gene3D G3DSA:3.40.50.2300 18 167 6.9E-15 T 11-10-2018 VV93_v1c39610 24051539e050e729721a0117a435f753 513 Pfam PF00072 Response regulator receiver domain 28 136 7.7E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c39610 24051539e050e729721a0117a435f753 513 SMART SM00448 26 148 0.0054 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Gene3D G3DSA:3.40.50.2300 571 700 3.0E-34 T 11-10-2018 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SMART SM00448 580 694 1.8E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SUPERFAMILY SSF47384 322 400 2.75E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Gene3D G3DSA:3.30.565.10 398 563 1.6E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SMART SM00387 446 561 3.2E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 558 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 514 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 539 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SMART SM00388 334 399 4.3E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Pfam PF02743 Cache domain 23 209 1.3E-12 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Gene3D G3DSA:1.10.287.130 299 397 6.1E-26 T 11-10-2018 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 399 1.9E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Pfam PF00072 Response regulator receiver domain 583 694 1.9E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SUPERFAMILY SSF52172 578 713 1.85E-32 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Gene3D G3DSA:3.30.450.20 19 186 1.8E-23 T 11-10-2018 VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 SUPERFAMILY SSF55874 388 559 1.44E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c19760 62868ee8d0b448a0262673fcf535578c 787 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 447 559 5.8E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41470 6de9175d5560a624d0cc5cbb119f7bd7 366 Gene3D G3DSA:3.40.50.2300 180 359 3.7E-144 T 11-10-2018 VV93_v1c41470 6de9175d5560a624d0cc5cbb119f7bd7 366 Gene3D G3DSA:3.40.50.2300 33 363 3.7E-144 T 11-10-2018 VV93_v1c41470 6de9175d5560a624d0cc5cbb119f7bd7 366 Pfam PF13407 Periplasmic binding protein domain 69 322 4.2E-13 T 11-10-2018 IPR025997 Periplasmic binding protein VV93_v1c41470 6de9175d5560a624d0cc5cbb119f7bd7 366 SUPERFAMILY SSF53822 27 364 6.28E-84 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 Pfam PF01012 Electron transfer flavoprotein domain 8 180 3.4E-43 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 Gene3D G3DSA:3.40.50.620 7 194 2.1E-47 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 202 284 8.6E-37 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 PIRSF PIRSF000089 5 321 1.0E-112 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 Gene3D G3DSA:3.40.50.1220 196 321 2.9E-58 T 11-10-2018 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 SUPERFAMILY SSF52402 7 175 9.77E-46 T 11-10-2018 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 SUPERFAMILY SSF52467 199 320 5.54E-50 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 SMART SM00893 8 194 2.0E-32 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 VV93_v1c39670 23c6aa55f7f5780d2dd2cab2baafb6a6 321 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 265 291 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 180 1.2E-8 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 Gene3D G3DSA:1.10.287.950 228 546 5.1E-62 T 11-10-2018 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 357 510 8.8E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 SMART SM00283 284 545 2.5E-59 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 SUPERFAMILY SSF58104 248 546 5.58E-63 T 11-10-2018 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 6.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c19230 da3191bdb1d91673a4f0c5d98fcbd27e 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 298 327 6.0E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 SUPERFAMILY SSF52402 6 209 2.0E-74 T 11-10-2018 VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 1.0E-163 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 PIRSF PIRSF002936 1 302 1.2E-156 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 Gene3D G3DSA:3.40.50.620 7 212 3.5E-66 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.02 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 VV93_v1c03810 3c299c74ea82d68fe276df747e0ca3d3 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 8.6E-65 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 SUPERFAMILY SSF46689 8 98 1.84E-24 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 31.402 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 2.0E-31 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 2.0E-31 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 2.0E-31 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 2.0E-31 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PIRSF PIRSF002097 1 98 2.6E-44 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 4.0E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 3.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 3.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c28570 2575495aef871798a88862dcd2069eba 98 Gene3D G3DSA:1.10.10.60 1 98 2.7E-32 T 11-10-2018 VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 SUPERFAMILY SSF46785 17 109 1.9E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 82 1.5E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 SMART SM00895 92 219 8.8E-21 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 Gene3D G3DSA:1.10.10.10 4 83 4.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 Pfam PF07729 FCD domain 92 217 1.6E-24 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 Gene3D G3DSA:1.20.120.530 85 227 3.1E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 SMART SM00345 24 82 2.3E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c14340 b8e9fb703582ed1cd8171ada0fb80013 231 SUPERFAMILY SSF48008 88 225 2.2E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 9 313 7.8E-101 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 9 313 3.9E-101 T 11-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 SUPERFAMILY SSF53613 10 297 1.14E-70 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 PIRSF PIRSF000535 6 315 2.4E-95 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 Gene3D G3DSA:3.40.1190.20 6 315 6.4E-95 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 Pfam PF00294 pfkB family carbohydrate kinase 29 298 2.3E-51 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c37020 36669f9ff0b77c6e97d2e9b1521aee24 325 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 43 67 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 Gene3D G3DSA:3.30.930.10 1 203 1.0E-64 T 11-10-2018 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 4.0E-25 T 11-10-2018 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 Hamap MF_00013 Octanoyltransferase [lipB]. 4 205 38.567 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 25 203 6.2E-72 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 Pfam PF03099 Biotin/lipoate A/B protein ligase family 58 158 2.9E-8 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 PIRSF PIRSF016262 1 217 6.4E-63 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VV93_v1c08380 6689c393b40bed091c93f7cb7538e05a 218 SUPERFAMILY SSF55681 3 205 1.57E-71 T 11-10-2018 VV93_v1c22510 2028626d0acc86571709fc854046902f 155 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 36.473 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 VV93_v1c22510 2028626d0acc86571709fc854046902f 155 Pfam PF00075 RNase H 3 141 2.1E-53 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VV93_v1c22510 2028626d0acc86571709fc854046902f 155 SUPERFAMILY SSF53098 3 143 1.21E-57 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c22510 2028626d0acc86571709fc854046902f 155 Gene3D G3DSA:3.30.420.10 1 155 2.4E-60 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c03870 840c5c73f728e9ff4ab0a570c7002964 165 Pfam PF11736 Protein of unknown function (DUF3299) 31 161 6.7E-44 T 11-10-2018 IPR021727 Protein of unknown function DUF3299 VV93_v1c03870 840c5c73f728e9ff4ab0a570c7002964 165 Gene3D G3DSA:2.40.50.870 24 165 2.8E-46 T 11-10-2018 VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 Gene3D G3DSA:3.40.50.300 101 344 1.4E-102 T 11-10-2018 VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 Gene3D G3DSA:3.30.450.90 1 100 3.7E-36 T 11-10-2018 VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 Pfam PF00437 Type II/IV secretion system protein 12 270 4.2E-46 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 333 1.4E-152 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VV93_v1c25790 fb94ce4335a824390915b33906938c9b 345 SUPERFAMILY SSF52540 5 335 1.59E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c28190 26459a15929983461dd489a01e5d80d4 323 Pfam PF00152 tRNA synthetases class II (D, K and N) 11 319 7.7E-43 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c28190 26459a15929983461dd489a01e5d80d4 323 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 14 318 5.2E-127 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 VV93_v1c28190 26459a15929983461dd489a01e5d80d4 323 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 1 323 52.657 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 VV93_v1c28190 26459a15929983461dd489a01e5d80d4 323 Gene3D G3DSA:3.30.930.10 1 322 2.0E-108 T 11-10-2018 VV93_v1c28190 26459a15929983461dd489a01e5d80d4 323 SUPERFAMILY SSF55681 10 320 7.57E-81 T 11-10-2018 VV93_v1c09970 50271db5268bd5eff63a4e6a90e39514 569 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 337 552 2.5E-11 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VV93_v1c09970 50271db5268bd5eff63a4e6a90e39514 569 SUPERFAMILY SSF53448 7 232 4.31E-32 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c09970 50271db5268bd5eff63a4e6a90e39514 569 Pfam PF00535 Glycosyl transferase family 2 8 128 4.5E-19 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VV93_v1c09970 50271db5268bd5eff63a4e6a90e39514 569 Gene3D G3DSA:3.90.550.10 5 210 1.2E-26 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c22810 0ac6c86fdf010f3916b2f7a7ba9da811 104 PIRSF PIRSF006257 1 104 1.9E-40 T 11-10-2018 IPR007384 Protein of unknown function UCP006257 VV93_v1c22810 0ac6c86fdf010f3916b2f7a7ba9da811 104 SUPERFAMILY SSF158452 1 102 2.22E-32 T 11-10-2018 IPR036814 YqcC-like superfamily VV93_v1c22810 0ac6c86fdf010f3916b2f7a7ba9da811 104 Gene3D G3DSA:1.20.1440.40 1 103 1.6E-30 T 11-10-2018 IPR036814 YqcC-like superfamily VV93_v1c22810 0ac6c86fdf010f3916b2f7a7ba9da811 104 Pfam PF04287 tRNA pseudouridine synthase C 8 101 1.7E-30 T 11-10-2018 IPR023376 YqcC-like domain VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Gene3D G3DSA:2.150.10.10 87 223 9.2E-15 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 75 93 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Gene3D G3DSA:2.150.10.10 30 86 9.6E-14 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 57 75 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 PRINTS PR00313 NodO calcium binding signature 88 96 2.3E-12 T 11-10-2018 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 PRINTS PR00313 NodO calcium binding signature 106 114 2.3E-12 T 11-10-2018 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 PRINTS PR00313 NodO calcium binding signature 124 133 2.3E-12 T 11-10-2018 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 PRINTS PR00313 NodO calcium binding signature 67 78 2.3E-12 T 11-10-2018 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 66 84 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 SUPERFAMILY SSF51120 11 96 1.16E-19 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 27 40 48.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 61 77 5.3E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 99 113 0.021 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 45 59 0.0056 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 79 95 2.6E-4 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 VV93_v1c11430 cd7f417dab2c95713421929ff31e0a1c 236 SUPERFAMILY SSF51120 69 203 7.46E-22 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 SUPERFAMILY SSF53335 99 341 1.09E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 SUPERFAMILY SSF46785 19 99 2.18E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 Gene3D G3DSA:1.20.58.1390 101 315 8.1E-112 T 11-10-2018 VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 Pfam PF00891 O-methyltransferase 169 338 3.1E-14 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 Gene3D G3DSA:3.40.50.150 166 350 8.1E-112 T 11-10-2018 VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 PIRSF PIRSF005739 3 345 6.1E-11 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 VV93_v1c10060 c8750dff720b3cb7733a6fcae7a83b53 356 Gene3D G3DSA:1.10.10.10 2 98 5.4E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c01620 337230612c12a30e6a3a69906e22ce7f 302 SUPERFAMILY SSF103481 45 144 1.18E-12 T 11-10-2018 VV93_v1c01620 337230612c12a30e6a3a69906e22ce7f 302 Pfam PF00892 EamA-like transporter family 9 141 7.1E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c01620 337230612c12a30e6a3a69906e22ce7f 302 Pfam PF00892 EamA-like transporter family 156 286 1.3E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c01620 337230612c12a30e6a3a69906e22ce7f 302 SUPERFAMILY SSF103481 189 291 1.96E-10 T 11-10-2018 VV93_v1c19600 6fb156be37071aca64063661a2305156 142 Pfam PF10980 Protein of unknown function (DUF2787) 15 139 8.5E-36 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c19600 6fb156be37071aca64063661a2305156 142 Gene3D G3DSA:3.10.450.430 5 142 2.6E-31 T 11-10-2018 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 2 229 1.7E-112 T 11-10-2018 IPR017722 Phosphonate utilization transcriptional regulator PhnR VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 4.3E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 SUPERFAMILY SSF46785 3 69 1.97E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 Gene3D G3DSA:3.40.1410.10 70 228 4.4E-35 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 SMART SM00345 6 65 1.9E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 Pfam PF07702 UTRA domain 86 223 4.7E-36 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 SUPERFAMILY SSF64288 53 228 5.02E-41 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 Gene3D G3DSA:1.10.10.10 2 68 6.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 SMART SM00866 86 225 6.2E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c34610 246c67e557d2646818fd54a0447f7d5a 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 Gene3D G3DSA:1.20.1560.10 142 454 1.0E-56 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 Gene3D G3DSA:3.40.50.300 460 703 2.0E-74 T 11-10-2018 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 Gene3D G3DSA:3.90.70.10 1 126 1.3E-37 T 11-10-2018 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 SUPERFAMILY SSF90123 142 452 2.09E-49 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 3 698 6.4E-291 T 11-10-2018 IPR017750 ATPase, type I secretion system VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 SUPERFAMILY SSF52540 459 693 2.15E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 ProSitePatterns PS00211 ABC transporters family signature. 607 621 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 Pfam PF00664 ABC transporter transmembrane region 158 417 2.0E-21 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 Pfam PF00005 ABC transporter 487 635 1.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c45180 d87f70673f9690150ebf0756aa7a0e6b 704 SMART SM00382 495 681 5.9E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c12210 a4f1c2b77244d0681eb96d92308894a5 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 337 6.7E-32 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c12210 a4f1c2b77244d0681eb96d92308894a5 340 Gene3D G3DSA:1.10.3720.10 102 330 1.5E-17 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12210 a4f1c2b77244d0681eb96d92308894a5 340 SUPERFAMILY SSF161098 108 320 5.89E-14 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24640 9b51b37684e389d39752239017a8f6a5 421 Pfam PF02447 GntP family permease 9 414 2.9E-23 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VV93_v1c13260 0fb55bba50fb54ea033f70d256bd231a 82 Pfam PF06945 Protein of unknown function (DUF1289) 11 56 2.4E-18 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Gene3D G3DSA:3.30.450.20 362 477 8.4E-14 T 11-10-2018 VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Pfam PF00990 Diguanylate cyclase, GGDEF domain 488 618 6.3E-13 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 361 480 1.4E-9 T 11-10-2018 IPR000014 PAS domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Pfam PF05228 CHASE4 domain 60 216 2.8E-27 T 11-10-2018 IPR007892 CHASE4 VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Pfam PF13426 PAS domain 374 474 1.7E-10 T 11-10-2018 IPR000014 PAS domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 SMART SM00267 475 639 1.6E-7 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 SUPERFAMILY SSF55785 354 472 1.13E-11 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 SMART SM00052 653 903 2.1E-97 T 11-10-2018 IPR001633 EAL domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Gene3D G3DSA:3.20.20.450 655 911 9.2E-86 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Gene3D G3DSA:3.30.70.270 487 654 2.0E-17 T 11-10-2018 VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 Pfam PF00563 EAL domain 659 898 1.1E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 SUPERFAMILY SSF55073 492 633 6.51E-16 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c18270 4e18d8633ec23d31cf0866c849e8a7dd 911 SUPERFAMILY SSF141868 659 907 8.11E-81 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 Gene3D G3DSA:3.30.70.250 125 197 1.2E-106 T 11-10-2018 VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 306 2.2E-40 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 SUPERFAMILY SSF52151 4 305 1.99E-81 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 SUPERFAMILY SSF55048 128 197 1.31E-18 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 Gene3D G3DSA:3.40.366.10 7 286 1.2E-106 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 Pfam PF00698 Acyl transferase domain 7 297 4.2E-36 T 11-10-2018 IPR014043 Acyl transferase VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 PIRSF PIRSF000446 1 307 5.4E-138 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VV93_v1c11910 42fb1e9cdaa7f06f118c55cf0b7b254c 307 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 6.4E-128 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 VV93_v1c03990 c027255cd32bf4257e3e4c1778a8e1e5 176 Pfam PF00719 Inorganic pyrophosphatase 18 173 2.5E-53 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VV93_v1c03990 c027255cd32bf4257e3e4c1778a8e1e5 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VV93_v1c03990 c027255cd32bf4257e3e4c1778a8e1e5 176 Gene3D G3DSA:3.90.80.10 1 175 6.5E-68 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VV93_v1c03990 c027255cd32bf4257e3e4c1778a8e1e5 176 SUPERFAMILY SSF50324 3 174 1.96E-66 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VV93_v1c03990 c027255cd32bf4257e3e4c1778a8e1e5 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.518 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 SUPERFAMILY SSF58104 238 547 2.75E-68 T 11-10-2018 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 Gene3D G3DSA:1.10.287.950 218 547 1.1E-68 T 11-10-2018 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 SMART SM00283 278 546 3.1E-60 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 512 5.3E-38 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 SMART SM00304 218 270 1.1E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c33550 26140bd44502d02b845edcb40241ef13 547 Pfam PF00672 HAMP domain 220 266 9.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 Pfam PF01467 Cytidylyltransferase-like 10 138 1.1E-19 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 8 67 2.5E-20 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 Gene3D G3DSA:3.40.50.620 1 164 1.1E-54 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 7 163 35.682 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 9 161 1.3E-59 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 7 25 7.0E-50 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 7.0E-50 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 54 78 7.0E-50 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 25 46 7.0E-50 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 7.0E-50 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 VV93_v1c02830 f74e072e7a4e4fb2cebdf46d7ee0f8b0 164 SUPERFAMILY SSF52374 8 162 9.65E-46 T 11-10-2018 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Pfam PF14841 FliG middle domain 134 206 2.7E-25 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PIRSF PIRSF003161 18 351 2.7E-113 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Pfam PF14842 FliG N-terminal domain 24 124 2.8E-27 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Gene3D G3DSA:1.10.220.30 107 212 5.0E-29 T 11-10-2018 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Gene3D G3DSA:1.10.220.30 214 351 8.6E-44 T 11-10-2018 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 SUPERFAMILY SSF48029 133 344 8.63E-67 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 SUPERFAMILY SSF48029 25 136 4.58E-20 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Pfam PF01706 FliG C-terminal domain 236 343 1.8E-41 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 Gene3D G3DSA:1.10.220.30 20 104 1.5E-17 T 11-10-2018 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 24 40 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 53 79 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 267 287 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 214 239 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 133 156 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 245 265 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 291 317 7.4E-60 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c21830 75f594f89c55c2e6c82ca1df568fdd32 351 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 20 349 2.9E-96 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 SMART SM00530 17 79 1.2E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 Pfam PF12268 Protein of unknown function (DUF3612) 327 501 6.3E-103 T 11-10-2018 IPR022055 Protein of unknown function DUF3612 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 Pfam PF01381 Helix-turn-helix 18 79 2.6E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 Gene3D G3DSA:1.10.260.40 11 93 8.2E-14 T 11-10-2018 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 SUPERFAMILY SSF47413 12 84 7.04E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c34400 9e76ffab64b179d876542b36e460bb0b 507 Pfam PF06114 IrrE N-terminal-like domain 206 326 2.5E-5 T 11-10-2018 IPR010359 IrrE N-terminal-like domain VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 233 5.4E-13 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 412 2.1E-40 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Hamap MF_00303 Trigger factor [tig]. 1 418 21.786 T 11-10-2018 IPR005215 Trigger factor GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 TIGRFAM TIGR00115 tig: trigger factor 11 412 1.6E-142 T 11-10-2018 IPR005215 Trigger factor GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Gene3D G3DSA:3.30.70.1050 1 115 8.3E-41 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 PIRSF PIRSF003095 1 432 1.1E-127 T 11-10-2018 IPR005215 Trigger factor GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 SUPERFAMILY SSF109998 248 429 3.53E-49 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 SUPERFAMILY SSF54534 90 241 8.84E-37 T 11-10-2018 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Gene3D G3DSA:3.10.50.40 150 246 1.9E-107 T 11-10-2018 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 5.2E-43 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 SUPERFAMILY SSF102735 1 131 4.05E-41 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 VV93_v1c10240 d8c889cdaf42e281530e625962012a0a 432 Gene3D G3DSA:1.10.3120.10 116 417 1.9E-107 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 29 665 3.6E-235 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 1.3E-17 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 SMART SM00487 265 459 2.5E-31 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 SMART SM00490 505 589 3.0E-23 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 SUPERFAMILY SSF50249 9 174 8.91E-40 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 SUPERFAMILY SSF52540 292 653 2.27E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Gene3D G3DSA:3.40.50.300 457 630 2.5E-54 T 11-10-2018 VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Pfam PF17191 RecG wedge domain 14 172 6.7E-21 T 11-10-2018 IPR033454 RecG, wedge domain VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Gene3D G3DSA:2.40.50.140 47 139 1.3E-12 T 11-10-2018 VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Gene3D G3DSA:3.40.50.300 209 450 8.7E-82 T 11-10-2018 VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 SUPERFAMILY SSF52540 214 453 1.5E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02180 28ec7ffc02fcb8cf53e95cdd6307ce21 693 Pfam PF00270 DEAD/DEAH box helicase 271 433 2.2E-18 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 SUPERFAMILY SSF52540 73 358 3.39E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 Gene3D G3DSA:3.40.50.300 212 379 7.5E-44 T 11-10-2018 VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 Pfam PF00270 DEAD/DEAH box helicase 25 194 5.6E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 Pfam PF00271 Helicase conserved C-terminal domain 232 338 1.3E-25 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 SMART SM00487 20 221 5.1E-63 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 SMART SM00490 257 338 4.0E-28 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c43600 0ec3cbc3624971d589e8c1db6c9292e7 398 Gene3D G3DSA:3.40.50.300 1 210 1.5E-75 T 11-10-2018 VV93_v1c10100 c4ce69fac058d4a4be82f8bbc473e015 490 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 6 459 1.3E-153 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 VV93_v1c10100 c4ce69fac058d4a4be82f8bbc473e015 490 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 476 44.457 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 Gene3D G3DSA:3.90.1150.10 10 468 3.0E-197 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 TIGRFAM TIGR02617 tnaA_trp_ase: tryptophanase 5 471 7.0E-301 T 11-10-2018 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 Gene3D G3DSA:3.40.640.10 61 334 3.0E-197 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 Hamap MF_00544 Tryptophanase [tnaA]. 4 471 96.835 T 11-10-2018 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 260 278 - T 11-10-2018 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 Pfam PF01212 Beta-eliminating lyase 49 437 1.5E-87 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 PIRSF PIRSF001386 3 472 9.1E-206 T 11-10-2018 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 VV93_v1c42380 40c68d754f998ef6d09fbb90fe00d822 473 SUPERFAMILY SSF53383 6 471 3.33E-124 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 Gene3D G3DSA:3.30.420.40 17 214 5.4E-35 T 11-10-2018 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 Gene3D G3DSA:3.90.640.10 263 343 5.4E-35 T 11-10-2018 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 Pfam PF00012 Hsp70 protein 17 345 8.1E-17 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 Gene3D G3DSA:3.30.420.40 220 344 5.4E-35 T 11-10-2018 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 SUPERFAMILY SSF53067 15 208 4.44E-27 T 11-10-2018 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 19 26 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 PRINTS PR00301 70kDa heat shock protein signature 15 28 4.8E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 PRINTS PR00301 70kDa heat shock protein signature 166 186 4.8E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 PRINTS PR00301 70kDa heat shock protein signature 233 243 4.8E-7 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 227 240 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c17860 5af33a02945158ab29e70cef30de57dd 637 SUPERFAMILY SSF53067 222 482 5.19E-27 T 11-10-2018 VV93_v1c03010 ed28a2b7960bd3c2ced3263dc95fa2a6 392 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 27 373 1.8E-92 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c03010 ed28a2b7960bd3c2ced3263dc95fa2a6 392 Gene3D G3DSA:3.40.50.2000 193 359 9.8E-90 T 11-10-2018 VV93_v1c03010 ed28a2b7960bd3c2ced3263dc95fa2a6 392 SUPERFAMILY SSF53756 6 376 2.2E-95 T 11-10-2018 VV93_v1c03010 ed28a2b7960bd3c2ced3263dc95fa2a6 392 Gene3D G3DSA:3.40.50.2000 7 369 9.8E-90 T 11-10-2018 VV93_v1c03010 ed28a2b7960bd3c2ced3263dc95fa2a6 392 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 6 372 9.7E-147 T 11-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 Pfam PF00158 Sigma-54 interaction domain 146 305 8.7E-34 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 Pfam PF02954 Bacterial regulatory protein, Fis family 396 435 5.7E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c06090 85015549800db911e247b36d5efb51be 444 SMART SM00382 166 303 0.0054 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06090 85015549800db911e247b36d5efb51be 444 SUPERFAMILY SSF46689 351 438 2.69E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 Gene3D G3DSA:1.10.10.60 387 440 9.5E-13 T 11-10-2018 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 SUPERFAMILY SSF52540 146 379 7.07E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06090 85015549800db911e247b36d5efb51be 444 Gene3D G3DSA:1.10.8.60 312 382 3.1E-23 T 11-10-2018 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 402 419 3.6E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 419 439 3.6E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c06090 85015549800db911e247b36d5efb51be 444 Gene3D G3DSA:3.40.50.300 145 310 2.6E-35 T 11-10-2018 VV93_v1c37000 332d885990b307a201b5400a375ac77c 191 SUPERFAMILY SSF56925 26 191 1.26E-28 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c37000 332d885990b307a201b5400a375ac77c 191 Pfam PF13505 Outer membrane protein beta-barrel domain 5 191 7.6E-22 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c37000 332d885990b307a201b5400a375ac77c 191 Gene3D G3DSA:2.40.160.20 25 191 5.8E-25 T 11-10-2018 VV93_v1c10320 fbb5636e9317c5da1a6a9a4cf7f02c65 202 Pfam PF03942 DTW domain 3 188 1.2E-50 T 11-10-2018 IPR005636 DTW VV93_v1c10320 fbb5636e9317c5da1a6a9a4cf7f02c65 202 SMART SM01144 1 193 5.1E-68 T 11-10-2018 IPR005636 DTW VV93_v1c00290 2ea326289e589cf3d9357a5f7426da95 158 Pfam PF13592 Winged helix-turn helix 99 156 9.4E-14 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c00290 2ea326289e589cf3d9357a5f7426da95 158 Pfam PF13551 Winged helix-turn helix 24 83 3.6E-13 T 11-10-2018 VV93_v1c00290 2ea326289e589cf3d9357a5f7426da95 158 SUPERFAMILY SSF46689 16 132 4.84E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Gene3D G3DSA:1.20.140.160 131 283 2.6E-14 T 11-10-2018 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 282 7.9E-126 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 SUPERFAMILY SSF88659 199 281 8.78E-19 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Pfam PF04542 Sigma-70 region 2 53 122 6.4E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 1.5E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 PRINTS PR00046 Major sigma-70 factor signature 267 278 1.5E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 1.5E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 PRINTS PR00046 Major sigma-70 factor signature 252 267 1.5E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 279 5.3E-34 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Pfam PF00140 Sigma-70 factor, region 1.2 14 40 7.7E-7 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 53.016 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Pfam PF04545 Sigma-70, region 4 229 279 9.1E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 Gene3D G3DSA:1.10.601.10 12 122 1.4E-26 T 11-10-2018 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 VV93_v1c01040 07e0665d46eca0b50609509aab6d6acc 285 SUPERFAMILY SSF88946 11 122 2.22E-39 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 VV93_v1c30320 6db8fd1a3fd272bfbb6e193a4611f5c3 263 Pfam PF14247 Putative metallopeptidase 36 258 6.8E-66 T 11-10-2018 IPR025644 Putative metallopeptidase VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 SMART SM00283 280 541 8.3E-73 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 SUPERFAMILY SSF58104 234 542 3.01E-72 T 11-10-2018 VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 Gene3D G3DSA:1.10.287.950 211 543 1.8E-74 T 11-10-2018 VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 170 1.3E-18 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 505 2.1E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c39710 451a7b1e4aa750e6cb8a929a2a9d22ef 543 SMART SM00304 211 265 1.3E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c33760 51304d721805157395eb63d77b7b0579 343 Gene3D G3DSA:3.40.50.2000 3 175 6.0E-11 T 11-10-2018 VV93_v1c33760 51304d721805157395eb63d77b7b0579 343 Gene3D G3DSA:3.40.50.2000 176 315 4.6E-17 T 11-10-2018 VV93_v1c33760 51304d721805157395eb63d77b7b0579 343 Pfam PF13692 Glycosyl transferases group 1 182 311 2.1E-15 T 11-10-2018 VV93_v1c33760 51304d721805157395eb63d77b7b0579 343 SUPERFAMILY SSF53756 3 313 5.76E-34 T 11-10-2018 VV93_v1c33760 51304d721805157395eb63d77b7b0579 343 Pfam PF13439 Glycosyltransferase Family 4 13 158 3.6E-9 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 350 592 9.9E-73 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 SUPERFAMILY SSF82866 409 606 6.54E-40 T 11-10-2018 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 13 614 42.828 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 136 600 2.2E-130 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Pfam PF02355 Protein export membrane protein 432 600 5.3E-17 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Gene3D G3DSA:1.20.1640.10 424 612 8.8E-10 T 11-10-2018 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Gene3D G3DSA:3.30.70.3400 221 295 1.2E-15 T 11-10-2018 VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Pfam PF13721 SecD export protein N-terminal TM region 12 113 1.1E-23 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Pfam PF07549 SecD/SecF GG Motif 129 153 6.3E-5 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VV93_v1c41390 7207b3335ee7e01c95ab67f86ee702ef 614 Gene3D G3DSA:3.30.1360.200 296 423 9.2E-24 T 11-10-2018 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 Gene3D G3DSA:1.10.10.10 124 238 8.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 234 9.8E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 Gene3D G3DSA:3.40.50.2300 1 123 2.8E-35 T 11-10-2018 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 SMART SM00862 158 234 1.6E-12 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 SUPERFAMILY SSF52172 5 129 4.13E-40 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 SUPERFAMILY SSF46894 135 235 8.79E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 Pfam PF00072 Response regulator receiver domain 7 117 4.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c10110 eb83f779ca2be853f14391d038bf3765 242 SMART SM00448 5 116 1.4E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 PIRSF PIRSF006272 1 166 4.3E-76 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 Gene3D G3DSA:1.10.287.680 1 53 6.7E-32 T 11-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 SUPERFAMILY SSF116960 1 166 1.83E-62 T 11-10-2018 VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 166 39.903 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 166 3.0E-96 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 Pfam PF03887 YfbU domain 1 166 5.8E-70 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU VV93_v1c20570 3510bcd459b9cc47a70d3cbaa0fa6ae6 166 Gene3D G3DSA:1.10.3190.10 54 166 2.7E-35 T 11-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily VV93_v1c10020 75fd86949244cd3f1120aa6b1948d8ea 86 SUPERFAMILY SSF47336 5 85 5.23E-14 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c10020 75fd86949244cd3f1120aa6b1948d8ea 86 Gene3D G3DSA:1.10.1200.10 4 85 1.2E-21 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c10020 75fd86949244cd3f1120aa6b1948d8ea 86 Pfam PF00550 Phosphopantetheine attachment site 7 80 5.8E-10 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 SUPERFAMILY SSF51735 3 167 1.39E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 Gene3D G3DSA:3.40.50.720 1 167 3.1E-56 T 11-10-2018 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 PIRSF PIRSF000103 1 302 7.2E-77 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 296 1.2E-123 T 11-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 165 1.6E-54 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 169 295 3.9E-29 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 SUPERFAMILY SSF48179 168 298 5.78E-38 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c39800 442e38170dacdaee79e8a8b8ebcce449 302 Gene3D G3DSA:1.10.1040.10 169 302 1.5E-41 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c40870 127f6081a266ee792ed69c394a193656 313 Gene3D G3DSA:3.40.50.720 1 118 1.3E-26 T 11-10-2018 VV93_v1c40870 127f6081a266ee792ed69c394a193656 313 SUPERFAMILY SSF51735 1 136 1.22E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c40870 127f6081a266ee792ed69c394a193656 313 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 6.1E-16 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 VV93_v1c40870 127f6081a266ee792ed69c394a193656 313 Gene3D G3DSA:3.30.360.10 119 312 3.7E-54 T 11-10-2018 VV93_v1c40870 127f6081a266ee792ed69c394a193656 313 SUPERFAMILY SSF55347 121 269 8.5E-44 T 11-10-2018 VV93_v1c07190 525154eb80fcb189c94b8e9da752b16f 76 Gene3D G3DSA:2.10.290.10 2 71 2.0E-27 T 11-10-2018 IPR029037 YfgJ-like VV93_v1c07190 525154eb80fcb189c94b8e9da752b16f 76 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 2.0E-31 T 11-10-2018 IPR010807 Protein of unknown function DUF1407 VV93_v1c07190 525154eb80fcb189c94b8e9da752b16f 76 Pfam PF07191 zinc-ribbons 5 68 8.2E-28 T 11-10-2018 IPR010807 Protein of unknown function DUF1407 VV93_v1c07190 525154eb80fcb189c94b8e9da752b16f 76 SUPERFAMILY SSF161187 3 70 3.4E-27 T 11-10-2018 VV93_v1c23670 a8295bc30101a35d4204e34b2f2347cc 380 PIRSF PIRSF004810 1 380 4.1E-121 T 11-10-2018 IPR014047 Chromate transporter, long chain VV93_v1c23670 a8295bc30101a35d4204e34b2f2347cc 380 Pfam PF02417 Chromate transporter 211 372 3.9E-35 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VV93_v1c23670 a8295bc30101a35d4204e34b2f2347cc 380 Pfam PF02417 Chromate transporter 2 168 2.8E-34 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 VV93_v1c23670 a8295bc30101a35d4204e34b2f2347cc 380 TIGRFAM TIGR00937 2A51: chromate efflux transporter 8 374 6.3E-94 T 11-10-2018 IPR014047 Chromate transporter, long chain VV93_v1c35840 d54e137476f41d1fa2dbd2ae44df5d16 117 Pfam PF01740 STAS domain 9 91 1.4E-5 T 11-10-2018 IPR002645 STAS domain VV93_v1c35840 d54e137476f41d1fa2dbd2ae44df5d16 117 Gene3D G3DSA:3.30.750.24 3 117 5.6E-20 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c35840 d54e137476f41d1fa2dbd2ae44df5d16 117 SUPERFAMILY SSF52091 3 98 2.35E-11 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c13450 33180133d7f05cce529a1084dd58abbd 374 Pfam PF17186 Lipocalin-like domain 252 374 5.1E-33 T 11-10-2018 VV93_v1c13450 33180133d7f05cce529a1084dd58abbd 374 Gene3D G3DSA:2.40.370.10 252 374 1.3E-24 T 11-10-2018 IPR023374 AttH-like domain superfamily VV93_v1c13450 33180133d7f05cce529a1084dd58abbd 374 SUPERFAMILY SSF159245 56 374 6.93E-94 T 11-10-2018 VV93_v1c13450 33180133d7f05cce529a1084dd58abbd 374 Pfam PF07143 CrtC N-terminal lipocalin domain 79 248 2.5E-44 T 11-10-2018 IPR010791 AttH domain VV93_v1c13450 33180133d7f05cce529a1084dd58abbd 374 Gene3D G3DSA:2.40.370.10 67 251 1.6E-52 T 11-10-2018 IPR023374 AttH-like domain superfamily VV93_v1c08920 69bd2c5ac171b38d9a55ce3ea7c13fa8 249 SUPERFAMILY SSF117143 77 207 1.7E-15 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VV93_v1c08920 69bd2c5ac171b38d9a55ce3ea7c13fa8 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 173 242 1.4E-22 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VV93_v1c08920 69bd2c5ac171b38d9a55ce3ea7c13fa8 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 4.0E-32 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VV93_v1c08920 69bd2c5ac171b38d9a55ce3ea7c13fa8 249 Pfam PF00460 Flagella basal body rod protein 8 35 2.0E-5 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 VV93_v1c08920 69bd2c5ac171b38d9a55ce3ea7c13fa8 249 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 6 226 8.4E-54 T 11-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 VV93_v1c32790 978bf7c7136567558fedb5d97f4543cd 133 Gene3D G3DSA:1.20.120.10 27 124 2.2E-10 T 11-10-2018 VV93_v1c32790 978bf7c7136567558fedb5d97f4543cd 133 Pfam PF07361 Cytochrome b562 28 124 7.1E-28 T 11-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 VV93_v1c32790 978bf7c7136567558fedb5d97f4543cd 133 SUPERFAMILY SSF47175 28 124 3.41E-28 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 Pfam PF01791 DeoC/LacD family aldolase 11 239 8.1E-49 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 SMART SM01133 10 244 4.5E-79 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 SUPERFAMILY SSF51569 6 245 2.83E-82 T 11-10-2018 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 230 2.7E-82 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 258 52.763 T 11-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 PIRSF PIRSF001357 5 252 6.6E-77 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 VV93_v1c24000 17374c953da157fb5a45e1832e080003 258 Gene3D G3DSA:3.20.20.70 1 256 1.0E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c42940 71043863c8640abd347bd3ed29b40576 566 Gene3D G3DSA:2.30.30.880 66 550 5.3E-132 T 11-10-2018 VV93_v1c42940 71043863c8640abd347bd3ed29b40576 566 PIRSF PIRSF001432 1 566 2.0E-278 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 VV93_v1c42940 71043863c8640abd347bd3ed29b40576 566 Gene3D G3DSA:1.50.10.20 28 535 5.3E-132 T 11-10-2018 VV93_v1c42940 71043863c8640abd347bd3ed29b40576 566 Pfam PF06917 Periplasmic pectate lyase 24 549 1.2E-133 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 VV93_v1c42940 71043863c8640abd347bd3ed29b40576 566 Gene3D G3DSA:2.20.25.430 289 404 5.3E-132 T 11-10-2018 VV93_v1c35800 892cf1a5144bef27478fef2f35c74e8d 182 SUPERFAMILY SSF55729 3 155 2.74E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c35800 892cf1a5144bef27478fef2f35c74e8d 182 Gene3D G3DSA:3.40.630.30 4 169 1.3E-25 T 11-10-2018 VV93_v1c35800 892cf1a5144bef27478fef2f35c74e8d 182 Pfam PF00583 Acetyltransferase (GNAT) family 45 138 2.3E-15 T 11-10-2018 IPR000182 GNAT domain VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Pfam PF16326 ABC transporter C-terminal domain 565 633 2.5E-20 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 SMART SM00382 344 514 3.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 SMART SM00382 28 230 2.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Pfam PF00005 ABC transporter 19 185 1.0E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 SUPERFAMILY SSF52540 312 521 4.56E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Pfam PF12848 ABC transporter 224 296 3.3E-11 T 11-10-2018 IPR032781 ABC-transporter extension domain VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Gene3D G3DSA:3.40.50.300 281 551 3.5E-68 T 11-10-2018 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Gene3D G3DSA:1.10.287.380 555 638 7.5E-28 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Gene3D G3DSA:3.40.50.300 7 279 1.7E-66 T 11-10-2018 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 SUPERFAMILY SSF52540 4 238 3.58E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 Pfam PF00005 ABC transporter 336 469 1.1E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c15310 cd2aa92e887add2a2801279eeeedd144 639 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 SUPERFAMILY SSF158544 219 287 1.31E-19 T 11-10-2018 IPR038072 GspK, central domain superfamily VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 SUPERFAMILY SSF54523 40 329 1.54E-35 T 11-10-2018 VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 Gene3D G3DSA:1.10.40.60 103 219 1.4E-86 T 11-10-2018 IPR038072 GspK, central domain superfamily VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 Gene3D G3DSA:1.10.40.60 220 289 1.4E-86 T 11-10-2018 IPR038072 GspK, central domain superfamily VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 SUPERFAMILY SSF158544 105 217 2.07E-29 T 11-10-2018 IPR038072 GspK, central domain superfamily VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 Gene3D G3DSA:3.30.1300.30 46 313 1.4E-86 T 11-10-2018 VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 Pfam PF03934 Type II secretion system (T2SS), protein K 34 321 1.8E-86 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 VV93_v1c02030 3be256ddb814003bc2ef177ba6e45fc1 340 PIRSF PIRSF002786 4 332 2.0E-64 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 VV93_v1c34690 e4ae137ac6c7a5e2f3f7f6b3f557c0b1 310 SUPERFAMILY SSF64182 3 307 2.75E-12 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily VV93_v1c34690 e4ae137ac6c7a5e2f3f7f6b3f557c0b1 310 PIRSF PIRSF028235 1 310 4.8E-217 T 11-10-2018 IPR016877 Uncharacterised conserved protein UCP028235 VV93_v1c40120 9e616b2b6fdb76b4c6cfdda96a8ec0c6 179 SMART SM01322 1 174 8.3E-96 T 11-10-2018 IPR009822 YaeQ VV93_v1c40120 9e616b2b6fdb76b4c6cfdda96a8ec0c6 179 Gene3D G3DSA:3.10.640.10 1 177 2.7E-63 T 11-10-2018 IPR038590 YaeQ superfamily VV93_v1c40120 9e616b2b6fdb76b4c6cfdda96a8ec0c6 179 PIRSF PIRSF011484 1 179 1.8E-61 T 11-10-2018 IPR009822 YaeQ VV93_v1c40120 9e616b2b6fdb76b4c6cfdda96a8ec0c6 179 SUPERFAMILY SSF52980 2 178 8.31E-62 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c40120 9e616b2b6fdb76b4c6cfdda96a8ec0c6 179 Pfam PF07152 YaeQ protein 1 170 9.2E-65 T 11-10-2018 IPR009822 YaeQ VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 Pfam PF13353 4Fe-4S single cluster domain 115 183 4.0E-7 T 11-10-2018 VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 PIRSF PIRSF004911 3 340 5.9E-116 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 TIGRFAM TIGR00238 TIGR00238: KamA family protein 11 328 6.4E-124 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 SUPERFAMILY SSF102114 102 324 1.96E-25 T 11-10-2018 VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 16 335 3.6E-155 T 11-10-2018 IPR022462 Lysine-2,3-aminomutase-like VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 Pfam PF04055 Radical SAM superfamily 117 239 1.8E-8 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c28260 adc4b6dfc7956aeb244b9e3c319526e6 340 Gene3D G3DSA:3.20.20.70 51 334 3.4E-89 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 3.6E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 3.6E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 3.6E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 Pfam PF00072 Response regulator receiver domain 7 119 5.5E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 Gene3D G3DSA:3.40.50.2300 3 132 1.6E-25 T 11-10-2018 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 2.8E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 Gene3D G3DSA:1.10.10.10 148 211 5.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 SMART SM00421 147 204 5.0E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 SMART SM00448 5 119 1.4E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 SUPERFAMILY SSF52172 4 173 1.11E-25 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c28430 890b904071e7b3488677eb904d3ef2fe 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 Pfam PF00515 Tetratricopeptide repeat 397 429 8.1E-11 T 11-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 Gene3D G3DSA:1.25.40.10 326 457 9.5E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 SUPERFAMILY SSF53300 86 267 8.73E-21 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 SUPERFAMILY SSF48452 350 444 4.52E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 SMART SM00028 397 430 2.1E-9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 SMART SM00327 84 285 9.4E-7 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 Pfam PF13519 von Willebrand factor type A domain 88 194 2.3E-16 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c33620 c4ca9eeb3f4475287b68ce5eb40b3a41 584 Gene3D G3DSA:3.40.50.410 83 285 7.0E-36 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Pfam PF14864 Alkyl sulfatase C-terminal 530 653 5.2E-41 T 11-10-2018 IPR029229 Alkyl sulfatase, C-terminal VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Gene3D G3DSA:1.25.40.880 383 523 6.6E-59 T 11-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 SMART SM00849 125 347 5.3E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Pfam PF00753 Metallo-beta-lactamase superfamily 124 347 2.0E-37 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Gene3D G3DSA:3.60.15.30 23 382 1.1E-166 T 11-10-2018 VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Pfam PF14863 Alkyl sulfatase dimerisation 386 522 1.4E-56 T 11-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 SUPERFAMILY SSF55718 532 653 6.12E-37 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 Gene3D G3DSA:3.30.1050.10 526 653 4.8E-46 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c43810 2d7823676be71b72e422b814bf9bb020 653 SUPERFAMILY SSF56281 24 524 8.54E-156 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.7E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.7E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.7E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-33 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 SMART SM00411 1 90 3.7E-46 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 SUPERFAMILY SSF47729 1 90 2.06E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 Gene3D G3DSA:4.10.520.10 1 90 2.2E-37 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c28650 cb962fcecd337369870c2eec928d65ee 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VV93_v1c03120 caa68b21f4e0d76389a40b8b41ec1630 330 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 7 313 45.489 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VV93_v1c03120 caa68b21f4e0d76389a40b8b41ec1630 330 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 14 313 3.9E-101 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 VV93_v1c03120 caa68b21f4e0d76389a40b8b41ec1630 330 PIRSF PIRSF026649 12 317 1.2E-82 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VV93_v1c03120 caa68b21f4e0d76389a40b8b41ec1630 330 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 15 308 2.0E-70 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VV93_v1c15610 218cb1d6f3cb2be2af0099f583e82b5d 475 SUPERFAMILY SSF81442 9 467 1.06E-121 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c15610 218cb1d6f3cb2be2af0099f583e82b5d 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 205 260 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c15610 218cb1d6f3cb2be2af0099f583e82b5d 475 Gene3D G3DSA:1.20.210.10 4 473 3.4E-205 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c15610 218cb1d6f3cb2be2af0099f583e82b5d 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 466 1.1E-229 T 11-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 VV93_v1c15610 218cb1d6f3cb2be2af0099f583e82b5d 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 445 7.8E-116 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c10990 73382ebc176d9d158230716e0baf8fc4 112 Gene3D G3DSA:3.40.30.10 2 106 2.7E-31 T 11-10-2018 VV93_v1c10990 73382ebc176d9d158230716e0baf8fc4 112 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 2.7E-46 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related VV93_v1c10990 73382ebc176d9d158230716e0baf8fc4 112 Pfam PF00462 Glutaredoxin 16 80 3.5E-17 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VV93_v1c10990 73382ebc176d9d158230716e0baf8fc4 112 SUPERFAMILY SSF52833 1 104 2.53E-34 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c10990 73382ebc176d9d158230716e0baf8fc4 112 PIRSF PIRSF005894 1 107 3.7E-52 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 VV93_v1c32520 45e05c2a3aefc7de20ce7ffb72d84b2d 147 Gene3D G3DSA:1.10.357.10 1 144 2.7E-35 T 11-10-2018 VV93_v1c32520 45e05c2a3aefc7de20ce7ffb72d84b2d 147 SUPERFAMILY SSF46689 2 74 1.64E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c32520 45e05c2a3aefc7de20ce7ffb72d84b2d 147 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.1E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c32520 45e05c2a3aefc7de20ce7ffb72d84b2d 147 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c32520 45e05c2a3aefc7de20ce7ffb72d84b2d 147 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c45440 e54e34a05ecc48d45faedec9860f32c6 213 SUPERFAMILY SSF64438 29 185 2.29E-48 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic VV93_v1c45440 e54e34a05ecc48d45faedec9860f32c6 213 Pfam PF03975 CheD chemotactic sensory transduction 83 180 5.6E-30 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 VV93_v1c45440 e54e34a05ecc48d45faedec9860f32c6 213 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 25 184 29.087 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 VV93_v1c45440 e54e34a05ecc48d45faedec9860f32c6 213 Gene3D G3DSA:3.30.1330.200 28 190 3.6E-48 T 11-10-2018 IPR038592 CheD-like superfamily VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SMART SM00316 133 198 4.1E-6 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.8E-8 T 11-10-2018 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF54814 279 343 3.66E-15 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF47794 356 415 8.16E-17 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:3.30.300.20 278 345 7.2E-24 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 440 489 9.0E-18 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 4.0E-21 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:3.30.1480.10 1 129 9.3E-44 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF50249 132 199 1.2E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:1.10.150.20 352 421 9.8E-30 T 11-10-2018 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 28.603 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF54814 201 278 1.24E-28 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:2.40.50.140 135 198 4.4E-17 T 11-10-2018 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF47794 429 492 3.61E-16 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:3.30.300.20 199 277 2.4E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 SUPERFAMILY SSF69705 1 126 2.35E-39 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Pfam PF08529 NusA N-terminal domain 4 123 7.8E-35 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Pfam PF13184 NusA-like KH domain 230 297 4.9E-27 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 1.9E-123 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 VV93_v1c24260 786097aeef39b7a646656b9259673bfe 495 Gene3D G3DSA:1.10.150.20 431 490 2.8E-24 T 11-10-2018 VV93_v1c34170 95101d505a13feed3a9dcce2cf834dea 141 Gene3D G3DSA:3.40.50.620 2 141 1.2E-36 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c34170 95101d505a13feed3a9dcce2cf834dea 141 Pfam PF00582 Universal stress protein family 3 138 5.6E-13 T 11-10-2018 IPR006016 UspA VV93_v1c34170 95101d505a13feed3a9dcce2cf834dea 141 PIRSF PIRSF006276 1 141 5.8E-43 T 11-10-2018 IPR006015 Universal stress protein A VV93_v1c34170 95101d505a13feed3a9dcce2cf834dea 141 SUPERFAMILY SSF52402 3 138 1.42E-24 T 11-10-2018 VV93_v1c21650 3c0e441507c605553ba5910991cca358 246 SUPERFAMILY SSF75708 27 245 1.7E-65 T 11-10-2018 VV93_v1c21650 3c0e441507c605553ba5910991cca358 246 Gene3D G3DSA:1.10.287.500 55 189 6.8E-46 T 11-10-2018 VV93_v1c21650 3c0e441507c605553ba5910991cca358 246 Pfam PF04344 Chemotaxis phosphatase, CheZ 37 246 3.7E-75 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VV93_v1c21650 3c0e441507c605553ba5910991cca358 246 PIRSF PIRSF002884 13 246 2.5E-96 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 VV93_v1c44900 26408d0502f00fa95b9324e5d9c9d136 474 Pfam PF03573 outer membrane porin, OprD family 50 472 8.4E-14 T 11-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 VV93_v1c44900 26408d0502f00fa95b9324e5d9c9d136 474 Gene3D G3DSA:2.40.160.10 56 474 1.2E-21 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Gene3D G3DSA:3.40.50.2300 1 136 1.3E-36 T 11-10-2018 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 SUPERFAMILY SSF52172 4 186 1.99E-39 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Gene3D G3DSA:1.10.10.60 349 404 5.6E-9 T 11-10-2018 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 SUPERFAMILY SSF46689 318 402 1.39E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Pfam PF00072 Response regulator receiver domain 5 115 3.3E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Gene3D G3DSA:3.40.50.300 142 282 3.8E-12 T 11-10-2018 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Pfam PF14532 Sigma-54 interaction domain 145 244 3.0E-6 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Pfam PF02954 Bacterial regulatory protein, Fis family 361 399 1.1E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 Gene3D G3DSA:1.10.8.60 283 348 5.1E-12 T 11-10-2018 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 SMART SM00448 3 114 6.7E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c45140 77d88e98a7bdbfac959a049522e14af9 409 SUPERFAMILY SSF52540 144 335 3.7E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11080 b17942d634a61f27accd8ca9310dc0a3 211 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 3.7E-64 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VV93_v1c11080 b17942d634a61f27accd8ca9310dc0a3 211 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 194 27.285 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VV93_v1c11080 b17942d634a61f27accd8ca9310dc0a3 211 Pfam PF04205 FMN-binding domain 100 188 2.7E-18 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VV93_v1c11080 b17942d634a61f27accd8ca9310dc0a3 211 SMART SM00900 100 192 2.4E-33 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VV93_v1c11080 b17942d634a61f27accd8ca9310dc0a3 211 PIRSF PIRSF006091 1 205 5.6E-78 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 VV93_v1c09190 a716dc47b8081d6d7a110f11f980134f 135 SUPERFAMILY SSF54631 7 126 2.27E-24 T 11-10-2018 VV93_v1c09190 a716dc47b8081d6d7a110f11f980134f 135 Pfam PF00571 CBS domain 78 125 3.8E-10 T 11-10-2018 IPR000644 CBS domain VV93_v1c09190 a716dc47b8081d6d7a110f11f980134f 135 Gene3D G3DSA:3.10.580.10 2 135 1.7E-27 T 11-10-2018 VV93_v1c09190 a716dc47b8081d6d7a110f11f980134f 135 SMART SM00116 16 65 6.5 T 11-10-2018 IPR000644 CBS domain VV93_v1c09190 a716dc47b8081d6d7a110f11f980134f 135 SMART SM00116 83 130 3.5E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 Gene3D G3DSA:1.10.530.10 161 299 7.5E-46 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 10 303 3.0E-111 T 11-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 167 303 1.8E-21 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 Pfam PF10135 Rod binding protein 53 102 8.3E-14 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 31 54 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 221 242 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 79 101 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 156 179 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 243 264 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 286 304 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 PRINTS PR01002 Flagellar protein FlgJ signature 180 198 2.7E-28 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 Gene3D G3DSA:2.10.70.40 195 246 7.5E-46 T 11-10-2018 VV93_v1c08960 8fcb54962b8f009770a13f95ee3430f3 306 SMART SM00047 146 305 1.0E-50 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VV93_v1c17690 36ff593bfd3e1dd9dabce277251e8ec5 378 Gene3D G3DSA:3.40.50.2300 12 140 1.7E-16 T 11-10-2018 VV93_v1c17690 36ff593bfd3e1dd9dabce277251e8ec5 378 Gene3D G3DSA:3.40.50.300 145 377 1.3E-30 T 11-10-2018 VV93_v1c17690 36ff593bfd3e1dd9dabce277251e8ec5 378 SUPERFAMILY SSF52540 146 375 9.75E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c17690 36ff593bfd3e1dd9dabce277251e8ec5 378 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 147 198 2.1E-6 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 468 3.3E-126 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 SUPERFAMILY SSF48179 177 472 7.48E-127 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 Gene3D G3DSA:3.40.50.720 1 180 1.0E-56 T 11-10-2018 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 Gene3D G3DSA:1.20.5.320 435 482 3.5E-25 T 11-10-2018 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PIRSF PIRSF000109 1 477 5.6E-242 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 11-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 4 469 1.1E-234 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 3 26 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 3.5E-85 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 169 3.9E-51 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 Gene3D G3DSA:1.10.1040.10 181 434 5.1E-103 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 SUPERFAMILY SSF51735 4 174 6.79E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c14830 b900e7b90c0f2d03ded146b397979371 482 SMART SM01350 179 469 4.6E-215 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 SUPERFAMILY SSF51735 6 257 1.02E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 Gene3D G3DSA:3.40.50.720 1 257 1.0E-41 T 11-10-2018 VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 7.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 7.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 7.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 7.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c03070 f5411c4ee2573ed44b75a8f6df7fd17d 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 256 2.1E-30 T 11-10-2018 VV93_v1c41000 79cf1622bcbff7a084d7888f2a5e3f6d 168 SUPERFAMILY SSF55729 4 155 1.83E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c41000 79cf1622bcbff7a084d7888f2a5e3f6d 168 Gene3D G3DSA:3.40.630.30 3 167 6.4E-38 T 11-10-2018 VV93_v1c41000 79cf1622bcbff7a084d7888f2a5e3f6d 168 Pfam PF13302 Acetyltransferase (GNAT) domain 9 148 1.1E-25 T 11-10-2018 IPR000182 GNAT domain VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 Gene3D G3DSA:3.40.50.720 1 222 1.9E-59 T 11-10-2018 VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 SUPERFAMILY SSF51735 7 220 5.33E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 205 2.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 57 68 2.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 148 2.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 165 2.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44690 4bf0988e9a13c7cd6e316537ace36fcd 222 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 39 218 2.1E-31 T 11-10-2018 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 Gene3D G3DSA:3.40.630.70 64 236 5.6E-58 T 11-10-2018 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 36 221 5.0E-73 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 237 88.491 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 Gene3D G3DSA:2.30.210.20 4 63 1.2E-26 T 11-10-2018 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 205 8.3E-66 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 VV93_v1c20290 510f5609725fef9cd432286527fde631 237 SUPERFAMILY SSF55729 4 232 9.53E-86 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 Pfam PF07549 SecD/SecF GG Motif 35 60 7.3E-11 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 113 282 8.0E-57 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 Gene3D G3DSA:1.20.1640.10 105 300 7.2E-12 T 11-10-2018 VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 39 285 1.3E-87 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 SUPERFAMILY SSF82866 74 293 4.45E-41 T 11-10-2018 VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 Pfam PF02355 Protein export membrane protein 111 292 1.6E-71 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 11 296 29.213 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 PRINTS PR01755 Bacterial translocase SecF protein signature 233 248 3.9E-32 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 PRINTS PR01755 Bacterial translocase SecF protein signature 38 53 3.9E-32 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 PRINTS PR01755 Bacterial translocase SecF protein signature 201 219 3.9E-32 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c06950 a8b9f02af9346bcd8fca485b02fec6eb 315 PRINTS PR01755 Bacterial translocase SecF protein signature 153 167 3.9E-32 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 Gene3D G3DSA:3.40.50.300 1 196 9.3E-43 T 11-10-2018 VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 SMART SM00382 26 205 2.7E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 SUPERFAMILY SSF52540 2 193 1.82E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 203 2.1E-78 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 VV93_v1c21580 347ae0ae766a41059e3223ee6bcad9e0 205 Pfam PF00005 ABC transporter 18 158 1.9E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 Pfam PF12838 4Fe-4S dicluster domain 65 120 6.8E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 Pfam PF12838 4Fe-4S dicluster domain 151 204 1.4E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 Gene3D G3DSA:3.30.70.20 61 137 2.1E-10 T 11-10-2018 VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 12 221 1.2E-75 T 11-10-2018 IPR004494 MauM/NapG ferredoxin-type protein VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 66 77 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 Gene3D G3DSA:3.30.70.20 140 224 4.8E-11 T 11-10-2018 VV93_v1c14640 8bf771ed628765c502875238b2f57357 257 SUPERFAMILY SSF54862 65 214 2.46E-27 T 11-10-2018 VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.7E-27 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 SMART SM00316 4 72 4.8E-6 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 SUPERFAMILY SSF50249 1 70 9.43E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.5E-38 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.238 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 VV93_v1c20310 dcb4525c3e58b45274dc0b85d99859d5 72 Gene3D G3DSA:2.40.50.140 1 72 8.4E-37 T 11-10-2018 VV93_v1c16020 39be757ef89b578bef7e74ddcb7bf4c1 293 SUPERFAMILY SSF82689 198 286 1.57E-7 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VV93_v1c16020 39be757ef89b578bef7e74ddcb7bf4c1 293 Gene3D G3DSA:3.30.70.100 196 290 6.9E-7 T 11-10-2018 VV93_v1c16020 39be757ef89b578bef7e74ddcb7bf4c1 293 Gene3D G3DSA:2.30.30.60 141 189 3.0E-8 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c16020 39be757ef89b578bef7e74ddcb7bf4c1 293 Pfam PF00924 Mechanosensitive ion channel 87 284 2.9E-35 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c16020 39be757ef89b578bef7e74ddcb7bf4c1 293 SUPERFAMILY SSF50182 126 186 3.27E-14 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 509 5.2E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 SUPERFAMILY SSF58104 237 546 1.83E-70 T 11-10-2018 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 SMART SM01049 38 132 7.4E-45 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 Pfam PF17200 Single Cache domain 2 41 190 8.8E-46 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 Pfam PF00672 HAMP domain 216 264 1.0E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 SMART SM00304 215 269 1.5E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 SMART SM00283 284 545 2.2E-63 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 Gene3D G3DSA:3.30.450.20 37 192 6.5E-64 T 11-10-2018 VV93_v1c28580 1125f162dc8fd11037cfb609204d2713 546 Gene3D G3DSA:1.10.287.950 215 546 1.0E-68 T 11-10-2018 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 349 6.3E-61 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 SUPERFAMILY SSF47917 352 466 1.73E-50 T 11-10-2018 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 340 349 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Gene3D G3DSA:1.10.1140.10 352 467 5.6E-54 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 73 8.1E-21 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 SUPERFAMILY SSF50615 1 75 1.91E-25 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Gene3D G3DSA:3.40.50.300 76 351 1.8E-111 T 11-10-2018 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 SMART SM00382 142 334 5.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 467 56.205 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 467 2.3E-249 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 SUPERFAMILY SSF52540 77 355 8.49E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29730 006d3fe3b073c67f6a283fc12f5fc6e8 467 Gene3D G3DSA:2.40.10.170 2 75 4.2E-30 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 161 2.5E-28 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Pfam PF14450 Cell division protein FtsA 207 381 1.9E-24 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 PIRSF PIRSF003101 1 420 5.2E-147 T 11-10-2018 IPR020823 Cell division protein FtsA VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 SUPERFAMILY SSF53067 198 384 3.02E-46 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.0E-150 T 11-10-2018 IPR020823 Cell division protein FtsA VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 SUPERFAMILY SSF53067 8 221 1.71E-59 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Gene3D G3DSA:3.90.640.10 235 300 8.4E-112 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Gene3D G3DSA:3.30.420.40 13 379 8.4E-112 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Gene3D G3DSA:3.30.420.40 197 359 8.4E-112 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Gene3D G3DSA:3.30.1490.110 87 169 8.4E-112 T 11-10-2018 VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 420 29.297 T 11-10-2018 IPR020823 Cell division protein FtsA VV93_v1c05600 d0dec83904f7f6393afa5c6d9be114a5 420 SMART SM00842 10 196 3.3E-94 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 701 718 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 Gene3D G3DSA:2.40.170.20 165 718 8.0E-45 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 SUPERFAMILY SSF56935 35 718 6.23E-84 T 11-10-2018 VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 151 1.3E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 50 718 1.5E-82 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 Gene3D G3DSA:2.170.130.10 30 156 8.7E-21 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c44100 497402d53bf5afbe3ce1cbe71e4ea754 718 Pfam PF00593 TonB dependent receptor 246 717 1.3E-24 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 SUPERFAMILY SSF52540 269 475 4.51E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 Pfam PF00005 ABC transporter 21 170 5.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 Gene3D G3DSA:3.40.50.300 266 498 3.6E-47 T 11-10-2018 VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 SMART SM00382 30 225 9.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 SMART SM00382 278 472 3.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 Gene3D G3DSA:3.40.50.300 1 240 7.6E-57 T 11-10-2018 VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 SUPERFAMILY SSF52540 5 228 4.02E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35720 d159c63dd5c9851dc8c5d71db1c9e8fa 501 Pfam PF00005 ABC transporter 270 423 3.0E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c25720 831f871306185e464e22ef58571cc793 231 SUPERFAMILY SSF54060 20 228 2.59E-94 T 11-10-2018 VV93_v1c25720 831f871306185e464e22ef58571cc793 231 Pfam PF04231 Endonuclease I 38 227 5.0E-45 T 11-10-2018 IPR007346 Endonuclease I GO:0004518 VV93_v1c35970 8a931718e499c0d4232dea0595b34add 441 PRINTS PR00811 Bacterial general secretion pathway protein D signature 188 198 6.1E-6 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c35970 8a931718e499c0d4232dea0595b34add 441 PRINTS PR00811 Bacterial general secretion pathway protein D signature 361 379 6.1E-6 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c35970 8a931718e499c0d4232dea0595b34add 441 Pfam PF13629 Pilus formation protein N terminal region 26 93 1.9E-18 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal VV93_v1c35970 8a931718e499c0d4232dea0595b34add 441 Pfam PF00263 Bacterial type II and III secretion system protein 242 396 5.4E-42 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c44380 8d67d4d304c80b2f997912807f6bfffd 659 Gene3D G3DSA:1.10.287.950 329 659 3.1E-69 T 11-10-2018 VV93_v1c44380 8d67d4d304c80b2f997912807f6bfffd 659 SMART SM00283 397 658 2.9E-77 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c44380 8d67d4d304c80b2f997912807f6bfffd 659 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 131 1.9E-13 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VV93_v1c44380 8d67d4d304c80b2f997912807f6bfffd 659 SUPERFAMILY SSF58104 350 659 3.92E-72 T 11-10-2018 VV93_v1c44380 8d67d4d304c80b2f997912807f6bfffd 659 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 442 625 1.4E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c24620 690d717da01226740a9e6ff073a57672 122 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 120 8.6E-42 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 VV93_v1c24620 690d717da01226740a9e6ff073a57672 122 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 120 4.0E-55 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 VV93_v1c24620 690d717da01226740a9e6ff073a57672 122 PIRSF PIRSF006287 1 122 1.0E-48 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 VV93_v1c24620 690d717da01226740a9e6ff073a57672 122 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 122 30.595 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 VV93_v1c36860 1445a5f5ca619036ab6684806dd9b16a 254 SUPERFAMILY SSF81301 16 128 4.46E-13 T 11-10-2018 VV93_v1c36860 1445a5f5ca619036ab6684806dd9b16a 254 Pfam PF01909 Nucleotidyltransferase domain 40 88 7.5E-6 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VV93_v1c36860 1445a5f5ca619036ab6684806dd9b16a 254 Gene3D G3DSA:3.30.460.10 18 122 1.0E-9 T 11-10-2018 VV93_v1c27030 6c98ebb047d0faecf14accb3d903cd87 153 SUPERFAMILY SSF103039 1 153 1.03E-37 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c27030 6c98ebb047d0faecf14accb3d903cd87 153 Gene3D G3DSA:3.40.1550.10 1 153 7.2E-46 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c27030 6c98ebb047d0faecf14accb3d903cd87 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 139 5.1E-22 T 11-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 208 227 2.2E-9 T 11-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 176 194 2.2E-9 T 11-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 72 94 2.2E-9 T 11-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 14 228 1.4E-46 T 11-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 11 251 9.7E-97 T 11-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 115 126 - T 11-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 Gene3D G3DSA:1.10.800.10 1 263 1.3E-98 T 11-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 VV93_v1c39510 f23aff25309da8acc6ebb2a2f0591212 263 SUPERFAMILY SSF56534 3 247 1.83E-96 T 11-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily VV93_v1c21250 8058209de1e6adcabb4c2f9354bd214c 187 SUPERFAMILY SSF110997 110 183 4.84E-16 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c21250 8058209de1e6adcabb4c2f9354bd214c 187 Pfam PF05036 Sporulation related domain 111 178 4.5E-13 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c21250 8058209de1e6adcabb4c2f9354bd214c 187 Gene3D G3DSA:3.30.70.1070 105 180 2.5E-9 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 232 248 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 PIRSF PIRSF000412 3 431 2.4E-168 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 Pfam PF00464 Serine hydroxymethyltransferase 19 395 8.2E-176 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 Gene3D G3DSA:3.40.640.10 47 298 1.4E-186 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 17 431 53.343 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 Gene3D G3DSA:3.90.1150.10 21 403 1.4E-186 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c36920 d0a79f4ecd512c30ed52dd0c6b50c8b0 431 SUPERFAMILY SSF53383 8 430 4.08E-182 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c29370 6aaaa8a2495e38bd195611c9dc1a6108 87 Gene3D G3DSA:3.30.160.140 1 87 1.8E-32 T 11-10-2018 IPR036692 Shew3726-like superfamily VV93_v1c29370 6aaaa8a2495e38bd195611c9dc1a6108 87 Pfam PF07369 Protein of unknown function (DUF1488) 5 85 3.3E-25 T 11-10-2018 IPR009962 Protein of unknown function DUF1488 VV93_v1c29370 6aaaa8a2495e38bd195611c9dc1a6108 87 SUPERFAMILY SSF160272 1 86 1.31E-28 T 11-10-2018 IPR036692 Shew3726-like superfamily VV93_v1c05450 ee7368b33e80680356de19fcea64703a 122 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 7 120 8.4E-35 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 VV93_v1c05450 ee7368b33e80680356de19fcea64703a 122 Gene3D G3DSA:3.40.1350.10 13 122 1.0E-30 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 VV93_v1c05450 ee7368b33e80680356de19fcea64703a 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 6 118 23.849 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 VV93_v1c05450 ee7368b33e80680356de19fcea64703a 122 Pfam PF02021 Uncharacterised protein family UPF0102 13 105 9.7E-27 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 VV93_v1c05450 ee7368b33e80680356de19fcea64703a 122 SUPERFAMILY SSF52980 8 112 1.18E-20 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 SUPERFAMILY SSF52540 2 258 1.45E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 Gene3D G3DSA:3.40.50.300 8 274 1.5E-58 T 11-10-2018 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 Pfam PF00005 ABC transporter 17 178 2.3E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 SMART SM00382 337 503 5.0E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 SMART SM00382 26 223 7.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 Pfam PF12848 ABC transporter 217 295 1.4E-27 T 11-10-2018 IPR032781 ABC-transporter extension domain VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 Pfam PF00005 ABC transporter 328 459 4.6E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 SUPERFAMILY SSF52540 279 494 2.27E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c27730 02f9a34cd9a3b84dc761404d41bcbbbe 640 Gene3D G3DSA:3.40.50.300 276 539 1.3E-54 T 11-10-2018 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 SUPERFAMILY SSF47757 8 72 9.02E-6 T 11-10-2018 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 Pfam PF01739 CheR methyltransferase, SAM binding domain 77 269 2.4E-40 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 1.0E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 1.0E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 1.0E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 PRINTS PR00996 Glutamate methyltransferase family signature 138 154 1.0E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 PRINTS PR00996 Glutamate methyltransferase family signature 70 82 1.0E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 SUPERFAMILY SSF53335 77 256 5.86E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 SMART SM00138 11 274 4.2E-30 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 Gene3D G3DSA:3.40.50.150 76 276 4.5E-58 T 11-10-2018 VV93_v1c38750 d1e9541a07087b2530ed4389cc65d477 279 Pfam PF03705 CheR methyltransferase, all-alpha domain 13 63 5.7E-10 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VV93_v1c05440 5bb5a87b71261f41fcd7008530b46831 196 Gene3D G3DSA:3.40.50.10490 1 195 1.3E-72 T 11-10-2018 VV93_v1c05440 5bb5a87b71261f41fcd7008530b46831 196 SUPERFAMILY SSF53697 1 191 2.83E-56 T 11-10-2018 VV93_v1c05440 5bb5a87b71261f41fcd7008530b46831 196 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 34.141 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 VV93_v1c05440 5bb5a87b71261f41fcd7008530b46831 196 Pfam PF13580 SIS domain 9 144 3.8E-35 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 249 119.62 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 Gene3D G3DSA:3.40.1280.10 1 160 2.8E-67 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 Gene3D G3DSA:1.10.1270.20 161 249 3.8E-36 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 2.4E-71 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 SUPERFAMILY SSF75217 1 246 1.88E-103 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 6.7E-110 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VV93_v1c24970 89eaf757c7954d6c75deeadbb44a5cff 249 PIRSF PIRSF000386 1 249 2.1E-102 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 VV93_v1c05750 9936ae6cf7f61652b2b3d3799dc0a8b7 231 Pfam PF01048 Phosphorylase superfamily 2 227 5.8E-50 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c05750 9936ae6cf7f61652b2b3d3799dc0a8b7 231 SUPERFAMILY SSF53167 1 230 4.32E-75 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c05750 9936ae6cf7f61652b2b3d3799dc0a8b7 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 48.192 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c05750 9936ae6cf7f61652b2b3d3799dc0a8b7 231 Gene3D G3DSA:3.40.50.1580 1 231 3.2E-72 T 11-10-2018 VV93_v1c05750 9936ae6cf7f61652b2b3d3799dc0a8b7 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 1.7E-101 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 Gene3D G3DSA:1.10.10.10 8 103 8.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 Pfam PF01022 Bacterial regulatory protein, arsR family 28 73 6.2E-9 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 4.4E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 4.4E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.4E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 SUPERFAMILY SSF46785 12 102 1.13E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c38440 739e619a95597646c230287ff97dd92c 103 SMART SM00418 21 99 9.6E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 SUPERFAMILY SSF51726 396 757 7.06E-115 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 431 753 3.1E-151 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 315 1.5E-118 T 11-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 SUPERFAMILY SSF51726 5 393 3.92E-108 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 757 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 PIRSF PIRSF000382 2 763 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 Gene3D G3DSA:3.20.20.210 389 756 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 Gene3D G3DSA:3.20.20.210 7 524 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c18990 e359c3ec8dae0188e42ddfa5a2ec28d6 778 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 758 35.901 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c28110 fae50dde27a7f49638530a49baf377a4 144 SMART SM00450 40 138 1.1E-21 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c28110 fae50dde27a7f49638530a49baf377a4 144 SUPERFAMILY SSF52821 16 141 6.55E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c28110 fae50dde27a7f49638530a49baf377a4 144 Gene3D G3DSA:3.40.250.10 22 144 1.9E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c28110 fae50dde27a7f49638530a49baf377a4 144 Pfam PF00581 Rhodanese-like domain 42 135 1.3E-18 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 803 911 1.5E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 298 504 6.8E-12 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.30.565.10 757 915 3.8E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF47226 1092 1196 1.57E-8 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF47384 676 756 7.85E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.40.190.10 146 236 3.7E-32 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.40.190.10 380 469 9.0E-24 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF00512 His Kinase A (phospho-acceptor) domain 690 754 2.0E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF52172 994 1121 4.98E-32 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF00072 Response regulator receiver domain 995 1108 1.1E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 81 263 1.3E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SMART SM00062 60 280 1.2E-7 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SMART SM00062 295 510 0.0035 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 PRINTS PR00344 Bacterial sensor protein C-terminal signature 897 910 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 PRINTS PR00344 Bacterial sensor protein C-terminal signature 873 891 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 866 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 PRINTS PR00344 Bacterial sensor protein C-terminal signature 838 852 3.0E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF53850 61 273 4.2E-23 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Pfam PF01627 Hpt domain 1127 1216 1.7E-6 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.40.50.2300 974 1117 2.1E-30 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.40.190.10 52 260 3.7E-32 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SMART SM00388 690 755 8.2E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:1.20.120.160 1118 1221 1.8E-6 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF55874 744 911 3.14E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SUPERFAMILY SSF53850 294 510 7.06E-19 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.30.450.20 552 679 5.4E-7 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SMART SM00448 993 1109 2.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:1.10.287.130 680 756 5.6E-19 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 Gene3D G3DSA:3.40.190.10 293 504 9.0E-24 T 11-10-2018 VV93_v1c36440 f29184f8ef5cf7497d6176d60e1bc00d 1223 SMART SM00387 802 913 2.3E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 Gene3D G3DSA:1.10.287.950 179 511 6.8E-64 T 11-10-2018 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 SMART SM00283 249 510 6.0E-58 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 SMART SM00304 180 234 4.7E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 309 475 4.8E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 376 405 6.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 6.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 347 374 6.7E-20 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c42100 22d7abeabfcf3b2361880380e13327a0 511 SUPERFAMILY SSF58104 202 510 7.98E-64 T 11-10-2018 VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 Pfam PF08668 HDOD domain 207 324 1.0E-13 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 SUPERFAMILY SSF109604 185 404 1.1E-41 T 11-10-2018 VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 Gene3D G3DSA:3.20.20.450 45 203 5.4E-18 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 Gene3D G3DSA:1.10.3210.10 204 389 1.7E-23 T 11-10-2018 VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 Pfam PF00563 EAL domain 75 194 6.9E-12 T 11-10-2018 IPR001633 EAL domain VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 SUPERFAMILY SSF141868 4 198 4.71E-28 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 PIRSF PIRSF003180 1 407 7.2E-172 T 11-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VV93_v1c00880 0f1a197e72f00790d77e9f32a6ce6592 407 SMART SM00052 2 199 3.7E-4 T 11-10-2018 IPR001633 EAL domain VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 1.5E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 1.5E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 1.5E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 SUPERFAMILY SSF46894 151 218 4.42E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 Gene3D G3DSA:3.30.450.20 10 128 3.5E-10 T 11-10-2018 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 Pfam PF08448 PAS fold 13 124 1.0E-23 T 11-10-2018 IPR013656 PAS fold-4 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 Gene3D G3DSA:1.10.10.10 150 218 5.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 213 4.3E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 SMART SM00421 156 213 5.0E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c45110 88af8b779e8684cad40fb85ff6a02717 242 SUPERFAMILY SSF55785 12 123 1.5E-8 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 Gene3D G3DSA:1.10.132.20 11 182 1.8E-67 T 11-10-2018 VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 SUPERFAMILY SSF55194 2 184 2.35E-71 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 Pfam PF01765 Ribosome recycling factor 20 183 4.2E-63 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 Gene3D G3DSA:3.30.1360.40 31 105 1.8E-67 T 11-10-2018 VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 4.4E-76 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VV93_v1c22730 87875dc3a4b62581c2780da53759cbf8 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.615 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 VV93_v1c28920 28d959b0c109d3f3b452853b5afdd8e0 94 Pfam PF13358 DDE superfamily endonuclease 6 85 3.6E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c28920 28d959b0c109d3f3b452853b5afdd8e0 94 Gene3D G3DSA:3.30.420.470 5 93 3.1E-9 T 11-10-2018 VV93_v1c28900 28d959b0c109d3f3b452853b5afdd8e0 94 Pfam PF13358 DDE superfamily endonuclease 6 85 3.6E-18 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c28900 28d959b0c109d3f3b452853b5afdd8e0 94 Gene3D G3DSA:3.30.420.470 5 93 3.1E-9 T 11-10-2018 VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 1.7E-139 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 SUPERFAMILY SSF100950 1 262 1.1E-103 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 11-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 224 6.4E-20 T 11-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 41.134 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 VV93_v1c30360 eafc76d7cf5310fd64462782f1cd12dd 266 Gene3D G3DSA:3.40.50.1360 1 266 3.6E-120 T 11-10-2018 VV93_v1c15000 517806fd4fcf35e60c12113a3844e3e3 397 Pfam PF13439 Glycosyltransferase Family 4 18 172 1.7E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c15000 517806fd4fcf35e60c12113a3844e3e3 397 Gene3D G3DSA:3.40.50.2000 75 364 3.9E-56 T 11-10-2018 VV93_v1c15000 517806fd4fcf35e60c12113a3844e3e3 397 Pfam PF00534 Glycosyl transferases group 1 186 346 1.4E-34 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c15000 517806fd4fcf35e60c12113a3844e3e3 397 Gene3D G3DSA:3.40.50.2000 172 353 3.9E-56 T 11-10-2018 VV93_v1c15000 517806fd4fcf35e60c12113a3844e3e3 397 SUPERFAMILY SSF53756 7 366 4.54E-64 T 11-10-2018 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Pfam PF12344 Ultra-violet resistance protein B 553 595 2.6E-20 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Pfam PF02151 UvrB/uvrC motif 636 671 1.9E-8 T 11-10-2018 IPR001943 UVR domain GO:0005515 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Gene3D G3DSA:3.40.50.300 416 597 9.7E-50 T 11-10-2018 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Gene3D G3DSA:3.40.50.300 265 415 1.0E-51 T 11-10-2018 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 671 43.127 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 SUPERFAMILY SSF52540 37 584 4.4E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 669 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 SUPERFAMILY SSF46600 629 672 2.88E-11 T 11-10-2018 IPR036876 UVR domain superfamily VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 SMART SM00487 9 426 2.7E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Gene3D G3DSA:3.40.50.300 1 233 2.6E-73 T 11-10-2018 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Gene3D G3DSA:4.10.860.10 631 676 4.0E-20 T 11-10-2018 VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Pfam PF00271 Helicase conserved C-terminal domain 440 545 1.9E-17 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 SUPERFAMILY SSF52540 4 416 4.25E-138 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 SMART SM00490 461 547 1.3E-19 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c11130 a7ea47799b54b669d0bf84b934573db9 676 Pfam PF04851 Type III restriction enzyme, res subunit 16 138 1.2E-8 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c15820 3e8248784590db7f0cc6f5bfc73bf9a8 406 Pfam PF00909 Ammonium Transporter Family 23 399 4.1E-88 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 VV93_v1c15820 3e8248784590db7f0cc6f5bfc73bf9a8 406 SUPERFAMILY SSF111352 17 384 3.92E-96 T 11-10-2018 VV93_v1c15820 3e8248784590db7f0cc6f5bfc73bf9a8 406 ProSitePatterns PS01219 Ammonium transporters signature. 167 192 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 VV93_v1c15820 3e8248784590db7f0cc6f5bfc73bf9a8 406 Gene3D G3DSA:1.10.3430.10 2 406 1.0E-101 T 11-10-2018 IPR029020 Ammonium/urea transporter VV93_v1c06850 fc405532e082cadb20a42b9e229faa88 202 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 193 3.1E-8 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c06850 fc405532e082cadb20a42b9e229faa88 202 Pfam PF00578 AhpC/TSA family 4 139 6.6E-34 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c06850 fc405532e082cadb20a42b9e229faa88 202 PIRSF PIRSF000239 1 201 2.0E-61 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c06850 fc405532e082cadb20a42b9e229faa88 202 SUPERFAMILY SSF52833 1 194 2.71E-67 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c06850 fc405532e082cadb20a42b9e229faa88 202 Gene3D G3DSA:3.40.30.10 1 197 2.4E-72 T 11-10-2018 VV93_v1c31820 b8ea1daf1f593208c0d788526cad3847 146 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 144 2.3E-31 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c31820 b8ea1daf1f593208c0d788526cad3847 146 SUPERFAMILY SSF55804 1 145 1.96E-29 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c31820 b8ea1daf1f593208c0d788526cad3847 146 Gene3D G3DSA:3.40.930.10 1 146 8.0E-32 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c38320 9a58487fd1e4b5f061048b8626692e06 122 Gene3D G3DSA:2.40.50.200 19 122 1.6E-15 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily VV93_v1c38320 9a58487fd1e4b5f061048b8626692e06 122 Pfam PF04076 Bacterial OB fold (BOF) protein 49 115 3.0E-10 T 11-10-2018 IPR005220 Bacterial OB-fold VV93_v1c38320 9a58487fd1e4b5f061048b8626692e06 122 SUPERFAMILY SSF101756 19 121 1.26E-21 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 Gene3D G3DSA:1.10.10.10 1 85 4.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 SUPERFAMILY SSF53850 88 292 1.81E-43 T 11-10-2018 VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 SUPERFAMILY SSF46785 1 87 2.95E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 Gene3D G3DSA:3.40.190.290 90 292 5.0E-63 T 11-10-2018 VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 5.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41830 6afc67a06237c8028029550c50ef8e46 299 Pfam PF03466 LysR substrate binding domain 88 291 7.8E-42 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 Pfam PF00271 Helicase conserved C-terminal domain 243 351 4.2E-30 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 Gene3D G3DSA:3.40.50.300 2 222 6.4E-72 T 11-10-2018 VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 SMART SM00487 28 234 1.0E-54 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 SMART SM00490 270 351 1.3E-31 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 SUPERFAMILY SSF52540 85 364 7.41E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 Pfam PF00270 DEAD/DEAH box helicase 33 207 3.6E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 Gene3D G3DSA:3.40.50.300 229 407 9.9E-46 T 11-10-2018 VV93_v1c29040 5db1d1bffefd8fd33dd606e43fd66c40 435 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.365 T 11-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 Pfam PF02300 Fumarate reductase subunit C 2 127 7.1E-49 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 SUPERFAMILY SSF81343 1 127 4.14E-52 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 1 127 26.991 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 127 1.0E-64 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 Gene3D G3DSA:1.20.1300.10 1 127 3.6E-47 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c28220 49314cb71613e1ee67e151d97df294f2 127 PIRSF PIRSF000180 1 127 6.0E-58 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 166 26.081 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Gene3D G3DSA:3.30.70.20 92 132 5.8E-6 T 11-10-2018 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Gene3D G3DSA:3.30.70.20 136 185 3.5E-9 T 11-10-2018 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 SUPERFAMILY SSF54862 37 173 4.45E-31 T 11-10-2018 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 PIRSF PIRSF005784 3 188 1.4E-86 T 11-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 186 2.7E-86 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Pfam PF04060 Putative Fe-S cluster 44 75 1.0E-14 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Pfam PF14697 4Fe-4S dicluster domain 107 161 6.3E-18 T 11-10-2018 VV93_v1c11110 a7517b0b1d3981f44949329ff3a90bc4 198 Gene3D G3DSA:1.10.15.40 38 87 9.2E-8 T 11-10-2018 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 SUPERFAMILY SSF46785 4 117 1.15E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 Gene3D G3DSA:3.40.190.10 168 269 5.1E-57 T 11-10-2018 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 Gene3D G3DSA:3.40.190.10 98 298 5.1E-57 T 11-10-2018 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 Gene3D G3DSA:1.10.10.10 2 89 3.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 SUPERFAMILY SSF53850 96 300 1.78E-35 T 11-10-2018 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 Pfam PF03466 LysR substrate binding domain 95 299 5.9E-38 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06860 514550690b7f77fced144bbec3769ed1 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 68 1.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 Gene3D G3DSA:3.30.70.270 378 533 1.9E-33 T 11-10-2018 VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 SMART SM00267 378 533 1.2E-29 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 Pfam PF07695 7TM diverse intracellular signalling 173 365 2.2E-17 T 11-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 Pfam PF00990 Diguanylate cyclase, GGDEF domain 388 529 2.0E-27 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 SUPERFAMILY SSF55073 393 530 1.73E-31 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c23920 0bf62354ac4eabb696f0e0aa1265d187 533 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 530 8.1E-24 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c35510 59b1e6270e8a7844b20a483c0541f20f 245 Gene3D G3DSA:3.60.21.10 4 232 2.2E-44 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c35510 59b1e6270e8a7844b20a483c0541f20f 245 SUPERFAMILY SSF56300 6 226 5.49E-36 T 11-10-2018 VV93_v1c35510 59b1e6270e8a7844b20a483c0541f20f 245 Pfam PF00149 Calcineurin-like phosphoesterase 15 199 1.2E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c34650 bdee2c7e5037c88e307655c331572268 261 Pfam PF01636 Phosphotransferase enzyme family 108 164 1.6E-13 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase VV93_v1c34650 bdee2c7e5037c88e307655c331572268 261 SUPERFAMILY SSF56112 8 206 6.12E-29 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c34650 bdee2c7e5037c88e307655c331572268 261 Gene3D G3DSA:3.90.1200.10 74 229 3.8E-13 T 11-10-2018 VV93_v1c39040 7ed06daa36084df952df4144d98558ad 352 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 27 343 1.2E-64 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 VV93_v1c39040 7ed06daa36084df952df4144d98558ad 352 SUPERFAMILY SSF51695 22 348 3.14E-90 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VV93_v1c39040 7ed06daa36084df952df4144d98558ad 352 Gene3D G3DSA:3.20.20.190 20 349 3.8E-123 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VV93_v1c15080 18baf03d9aac01c98ac9258fc807ed05 106 Pfam PF01740 STAS domain 10 99 8.9E-11 T 11-10-2018 IPR002645 STAS domain VV93_v1c15080 18baf03d9aac01c98ac9258fc807ed05 106 SUPERFAMILY SSF52091 7 101 2.75E-20 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c15080 18baf03d9aac01c98ac9258fc807ed05 106 Gene3D G3DSA:3.30.750.24 2 105 4.5E-20 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c32850 071ec3d6ba2c575445890cf6a597002a 127 SUPERFAMILY SSF54593 1 126 3.3E-28 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c32850 071ec3d6ba2c575445890cf6a597002a 127 Gene3D G3DSA:3.10.180.10 7 126 4.6E-29 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c32850 071ec3d6ba2c575445890cf6a597002a 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 1.4E-17 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 361 543 6.8E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 Gene3D G3DSA:1.10.287.950 247 578 3.2E-68 T 11-10-2018 VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 SMART SM00304 246 300 1.4E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 SMART SM00283 315 576 3.5E-57 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 Pfam PF00672 HAMP domain 250 297 1.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14220 cb0f16b707fa84ff91e76191779c1601 578 SUPERFAMILY SSF58104 268 577 3.53E-72 T 11-10-2018 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 SUPERFAMILY SSF48695 36 469 1.12E-161 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 Pfam PF02335 Cytochrome c552 40 469 4.1E-179 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 Gene3D G3DSA:1.20.140.10 308 450 1.8E-186 T 11-10-2018 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 35 472 9.1E-248 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 PIRSF PIRSF000243 2 474 5.3E-127 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 Hamap MF_01182 Cytochrome c-552 [nrfA]. 3 474 59.232 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 VV93_v1c11690 cdd4eb7395f4f51e96028180010f78e2 474 Gene3D G3DSA:1.10.1130.10 39 468 1.8E-186 T 11-10-2018 VV93_v1c33200 612fdd92d547a39358e944f67ed61dc2 302 Gene3D G3DSA:3.40.190.10 100 235 4.3E-39 T 11-10-2018 VV93_v1c33200 612fdd92d547a39358e944f67ed61dc2 302 Gene3D G3DSA:3.40.190.10 45 280 4.3E-39 T 11-10-2018 VV93_v1c33200 612fdd92d547a39358e944f67ed61dc2 302 SUPERFAMILY SSF53850 44 291 2.04E-35 T 11-10-2018 VV93_v1c33200 612fdd92d547a39358e944f67ed61dc2 302 Pfam PF12849 PBP superfamily domain 45 245 5.0E-9 T 11-10-2018 IPR024370 PBP domain VV93_v1c26520 ffa15299265c1435dc9a16d2b9fe3c2c 1295 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 8 1282 0.0 T 11-10-2018 IPR011836 Conserved hypothetical protein CHP02099 VV93_v1c26520 ffa15299265c1435dc9a16d2b9fe3c2c 1295 Pfam PF13502 AsmA-like C-terminal region 1032 1272 1.4E-57 T 11-10-2018 IPR032712 AsmA-like, C-terminal VV93_v1c26520 ffa15299265c1435dc9a16d2b9fe3c2c 1295 Pfam PF13116 Protein of unknown function 508 794 8.1E-92 T 11-10-2018 IPR025263 Domain of unknown function DUF3971 VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 Gene3D G3DSA:2.60.40.10 350 446 1.1E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 SMART SM00495 462 503 1.2E-4 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 Gene3D G3DSA:2.60.40.10 256 347 1.1E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 Gene3D G3DSA:2.60.40.10 156 246 2.4E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 Gene3D G3DSA:2.10.10.20 454 507 1.9E-12 T 11-10-2018 VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 Pfam PF14600 Cellulose-binding domain 454 507 5.5E-14 T 11-10-2018 IPR032798 Endoglucanase Z, cellulose-binding domain KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 VV93_v1c42060 cca1fc50a80b1d46972e516305e32902 1205 SUPERFAMILY SSF51055 457 507 4.51E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c03100 62517615265df2aa0f6467f32b01e8bc 420 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 212 2.5E-60 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VV93_v1c03100 62517615265df2aa0f6467f32b01e8bc 420 Gene3D G3DSA:3.40.50.2000 217 406 9.3E-62 T 11-10-2018 VV93_v1c03100 62517615265df2aa0f6467f32b01e8bc 420 SUPERFAMILY SSF53756 60 402 3.39E-15 T 11-10-2018 VV93_v1c03100 62517615265df2aa0f6467f32b01e8bc 420 Gene3D G3DSA:3.40.50.11720 33 210 1.2E-46 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 VV93_v1c03100 62517615265df2aa0f6467f32b01e8bc 420 Pfam PF00534 Glycosyl transferases group 1 247 374 1.5E-6 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c42200 8ca8932a9ea8cf9ca7357860b4f51b7e 393 Gene3D G3DSA:3.60.120.10 3 391 6.4E-114 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c42200 8ca8932a9ea8cf9ca7357860b4f51b7e 393 SUPERFAMILY SSF56322 18 385 4.97E-86 T 11-10-2018 IPR005801 ADC synthase GO:0009058 VV93_v1c42200 8ca8932a9ea8cf9ca7357860b4f51b7e 393 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 105 382 6.2E-84 T 11-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 VV93_v1c42200 8ca8932a9ea8cf9ca7357860b4f51b7e 393 Pfam PF00425 chorismate binding enzyme 121 375 1.8E-70 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 Gene3D G3DSA:3.30.750.70 69 135 4.9E-8 T 11-10-2018 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 Pfam PF00455 DeoR C terminal sensor domain 74 232 7.3E-54 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 5.2E-24 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 SUPERFAMILY SSF46785 5 75 6.65E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 SMART SM01134 72 234 4.0E-71 T 11-10-2018 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.9E-12 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.9E-12 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 SMART SM00420 6 58 4.1E-27 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 SUPERFAMILY SSF100950 74 234 3.84E-30 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c23410 9a6067f8bf671739a8f5b7727932f9ce 255 Gene3D G3DSA:1.10.10.10 1 68 6.6E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 Gene3D G3DSA:1.10.10.350 370 472 1.1E-25 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 SUPERFAMILY SSF52374 3 301 3.22E-108 T 11-10-2018 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 464 32.37 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 9.7E-28 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 9.7E-28 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 9.7E-28 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 9.7E-28 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 9.7E-28 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 465 2.1E-196 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 Gene3D G3DSA:3.40.50.620 2 317 3.1E-133 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 SUPERFAMILY SSF48163 302 464 1.23E-48 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 VV93_v1c08780 e8df1c9297d6abfe68287a59b8d82d81 474 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 308 2.9E-114 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VV93_v1c31980 7213ef2792e8ea37cd21ccc3cc1c0f2e 198 Pfam PF06961 Protein of unknown function (DUF1294) 108 162 1.4E-23 T 11-10-2018 IPR010718 Protein of unknown function DUF1294 VV93_v1c31980 7213ef2792e8ea37cd21ccc3cc1c0f2e 198 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 3.6E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c31980 7213ef2792e8ea37cd21ccc3cc1c0f2e 198 Gene3D G3DSA:2.40.50.140 1 71 3.8E-16 T 11-10-2018 VV93_v1c31980 7213ef2792e8ea37cd21ccc3cc1c0f2e 198 SUPERFAMILY SSF50249 3 69 5.63E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c31980 7213ef2792e8ea37cd21ccc3cc1c0f2e 198 SMART SM00357 4 68 1.4E-6 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 Gene3D G3DSA:2.60.300.12 7 113 1.0E-32 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 3.8E-37 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 SUPERFAMILY SSF89360 7 99 8.83E-30 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 Pfam PF01521 Iron-sulphur cluster biosynthesis 8 108 2.3E-19 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 113 35.96 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 VV93_v1c24420 98410e6eed6f1d7dd75f6c4309f1681b 113 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 94 111 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 4 359 6.6E-136 T 11-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 SMART SM00382 25 208 5.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 SUPERFAMILY SSF52540 11 237 1.02E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 SUPERFAMILY SSF50331 237 359 1.04E-15 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 Gene3D G3DSA:2.40.50.100 292 360 3.8E-13 T 11-10-2018 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 Pfam PF03459 TOBE domain 293 359 1.0E-12 T 11-10-2018 IPR005116 Transport-associated OB, type 1 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 Pfam PF00005 ABC transporter 18 158 7.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c38280 19dc5d33ec5defbf39c21f2c27ec1077 368 Gene3D G3DSA:3.40.50.300 1 242 6.8E-54 T 11-10-2018 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 Hamap MF_00258 Glutamate racemase [murI]. 7 254 32.808 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 Gene3D G3DSA:3.40.50.1860 11 231 6.9E-81 T 11-10-2018 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 SUPERFAMILY SSF53681 111 260 4.91E-34 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 Pfam PF01177 Asp/Glu/Hydantoin racemase 11 215 1.2E-25 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 Gene3D G3DSA:3.40.50.1860 99 208 6.9E-81 T 11-10-2018 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 TIGRFAM TIGR00067 glut_race: glutamate racemase 9 224 1.7E-68 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 SUPERFAMILY SSF53681 8 108 8.5E-30 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c01560 9acf244688f0b2e943079fd29a95917e 263 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 74 82 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Pfam PF13356 Arm DNA-binding domain 8 94 2.5E-18 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Gene3D G3DSA:1.10.443.10 215 388 2.0E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 SUPERFAMILY SSF56349 105 386 5.0E-59 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Pfam PF00589 Phage integrase family 214 376 3.2E-26 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Gene3D G3DSA:1.10.150.130 107 214 5.3E-29 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 106 155 8.4E-12 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VV93_v1c05020 01e40373d1b9ecb6fafb5ef1d1af69c0 413 Gene3D G3DSA:3.30.160.390 6 106 4.7E-31 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c06560 eba81ec3e4d4ebc890cef21459ef0f3f 142 Gene3D G3DSA:3.10.450.430 1 142 5.0E-49 T 11-10-2018 VV93_v1c06560 eba81ec3e4d4ebc890cef21459ef0f3f 142 Pfam PF10980 Protein of unknown function (DUF2787) 18 140 2.7E-39 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c33450 d02c77fe2fc81e5bee4aa1ff99803241 92 PIRSF PIRSF002855 1 92 7.1E-30 T 11-10-2018 IPR016367 Murein-lipoprotein VV93_v1c33450 d02c77fe2fc81e5bee4aa1ff99803241 92 SUPERFAMILY SSF58042 20 91 1.73E-13 T 11-10-2018 VV93_v1c33450 d02c77fe2fc81e5bee4aa1ff99803241 92 Pfam PF04728 Lipoprotein leucine-zipper 33 92 9.7E-16 T 11-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 VV93_v1c33450 d02c77fe2fc81e5bee4aa1ff99803241 92 Gene3D G3DSA:1.20.5.190 25 91 5.5E-7 T 11-10-2018 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 35 544 5.7E-264 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 SUPERFAMILY SSF51645 19 544 1.96E-188 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 Pfam PF01274 Malate synthase 24 544 1.4E-202 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 Gene3D G3DSA:1.20.1220.12 424 545 1.7E-49 T 11-10-2018 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 PIRSF PIRSF001363 12 545 9.2E-255 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 ProSitePatterns PS00510 Malate synthase signature. 278 293 - T 11-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c06870 61c0b8d026514f76bbbc0321a5150a02 545 Gene3D G3DSA:3.20.20.360 13 423 4.3E-192 T 11-10-2018 VV93_v1c15800 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF13006 Insertion element 4 transposase N-terminal 18 109 2.8E-29 T 11-10-2018 IPR024473 Transposase, IS4, N-terminal VV93_v1c15800 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF01609 Transposase DDE domain 128 352 3.2E-24 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 VV93_v1c15800 e66b95e06d17b26a285e7084d984eaf6 440 SUPERFAMILY SSF53098 100 357 2.12E-28 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c32630 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF13006 Insertion element 4 transposase N-terminal 18 109 2.8E-29 T 11-10-2018 IPR024473 Transposase, IS4, N-terminal VV93_v1c32630 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF01609 Transposase DDE domain 128 352 3.2E-24 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 VV93_v1c32630 e66b95e06d17b26a285e7084d984eaf6 440 SUPERFAMILY SSF53098 100 357 2.12E-28 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c26320 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF13006 Insertion element 4 transposase N-terminal 18 109 2.8E-29 T 11-10-2018 IPR024473 Transposase, IS4, N-terminal VV93_v1c26320 e66b95e06d17b26a285e7084d984eaf6 440 Pfam PF01609 Transposase DDE domain 128 352 3.2E-24 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 VV93_v1c26320 e66b95e06d17b26a285e7084d984eaf6 440 SUPERFAMILY SSF53098 100 357 2.12E-28 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 SUPERFAMILY SSF52402 26 213 1.76E-55 T 11-10-2018 VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 Gene3D G3DSA:3.40.50.620 7 221 6.1E-65 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 38 248 2.6E-85 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 14 248 38.992 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 54 224 3.0E-50 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 PIRSF PIRSF000857 4 253 2.8E-57 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 VV93_v1c26950 b635db39b4ad81d4d027426f1df0b608 258 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 26 247 3.1E-91 T 11-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:3.40.50.2300 695 849 7.6E-42 T 11-10-2018 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF55785 175 286 2.79E-13 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF47384 284 365 1.31E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 523 5.9E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF47226 796 965 2.09E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SMART SM00448 545 664 2.1E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SMART SM00448 695 813 7.2E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:3.40.50.2300 530 667 6.8E-32 T 11-10-2018 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF52172 691 818 6.69E-38 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 2.0E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF00072 Response regulator receiver domain 547 661 5.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF00072 Response regulator receiver domain 697 813 2.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 286 5.7E-14 T 11-10-2018 IPR000014 PAS domain VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF55874 353 522 9.43E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF00512 His Kinase A (phospho-acceptor) domain 300 364 1.7E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF01627 Hpt domain 901 964 6.2E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:3.30.565.10 363 528 5.1E-49 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:1.10.287.130 278 362 1.2E-28 T 11-10-2018 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:3.30.450.20 157 277 7.1E-16 T 11-10-2018 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Pfam PF00989 PAS fold 165 221 5.8E-7 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SMART SM00091 162 228 1.5E-4 T 11-10-2018 IPR000014 PAS domain VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SUPERFAMILY SSF52172 543 673 3.13E-29 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 Gene3D G3DSA:1.20.120.160 864 973 3.7E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SMART SM00388 299 364 2.8E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c35870 97d9ec48f6f2783dc1b1549b8008a621 1072 SMART SM00387 411 527 5.6E-39 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Gene3D G3DSA:3.30.565.10 310 461 7.0E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 3.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 3.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 3.1E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Pfam PF00672 HAMP domain 191 238 1.9E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 SUPERFAMILY SSF47384 230 305 1.96E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 36 168 2.9E-60 T 11-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 SMART SM00387 350 460 1.6E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 SMART SM00388 244 306 6.4E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 SMART SM00304 190 243 9.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Gene3D G3DSA:3.30.450.210 31 157 1.9E-50 T 11-10-2018 IPR038515 CpxA, periplasmic domain superfamily VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 351 458 4.3E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 304 3.4E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 Gene3D G3DSA:1.10.287.130 194 307 1.0E-33 T 11-10-2018 VV93_v1c28360 eaa2961bd7455094af793bf163dbf8fd 462 SUPERFAMILY SSF55874 296 458 1.7E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c04460 59538be6e96ec4c60327374fec9d9177 328 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 327 36.241 T 11-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 VV93_v1c04460 59538be6e96ec4c60327374fec9d9177 328 SUPERFAMILY SSF53659 3 326 3.52E-112 T 11-10-2018 VV93_v1c04460 59538be6e96ec4c60327374fec9d9177 328 Gene3D G3DSA:3.40.718.10 1 328 7.7E-122 T 11-10-2018 VV93_v1c04460 59538be6e96ec4c60327374fec9d9177 328 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 323 1.0E-126 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VV93_v1c04460 59538be6e96ec4c60327374fec9d9177 328 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 31 320 1.3E-106 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 VV93_v1c27050 f82f1b7244772135ce84bbaecdac5118 139 Pfam PF01894 Uncharacterised protein family UPF0047 19 135 6.7E-40 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 VV93_v1c27050 f82f1b7244772135ce84bbaecdac5118 139 Gene3D G3DSA:2.60.120.460 2 139 2.0E-44 T 11-10-2018 IPR035917 YjbQ-like superfamily VV93_v1c27050 f82f1b7244772135ce84bbaecdac5118 139 SUPERFAMILY SSF111038 1 139 3.14E-51 T 11-10-2018 IPR035917 YjbQ-like superfamily VV93_v1c27050 f82f1b7244772135ce84bbaecdac5118 139 PIRSF PIRSF004681 1 139 9.6E-48 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 VV93_v1c27050 f82f1b7244772135ce84bbaecdac5118 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 5 139 6.2E-47 T 11-10-2018 IPR001602 Uncharacterised protein family UPF0047 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 544 7.0E-38 T 11-10-2018 IPR006512 YidE/YbjL duplication VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 171 1.2E-27 T 11-10-2018 IPR006512 YidE/YbjL duplication VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 SUPERFAMILY SSF116726 294 377 2.35E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Pfam PF02080 TrkA-C domain 309 374 2.0E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Pfam PF02080 TrkA-C domain 232 281 5.6E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Gene3D G3DSA:3.30.70.1450 228 288 2.1E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 560 57.658 T 11-10-2018 IPR023017 Transport protein YbjL, putative VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 SUPERFAMILY SSF116726 230 285 5.75E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Pfam PF06826 Predicted Permease Membrane Region 17 185 2.5E-35 T 11-10-2018 IPR006512 YidE/YbjL duplication VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Pfam PF06826 Predicted Permease Membrane Region 389 557 1.6E-42 T 11-10-2018 IPR006512 YidE/YbjL duplication VV93_v1c13500 af3897bb5d9dcc6482573ab0cabcee00 560 Gene3D G3DSA:3.30.70.1450 304 376 1.7E-5 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Pfam PF03104 DNA polymerase family B, exonuclease domain 84 298 1.3E-15 T 11-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 SUPERFAMILY SSF56672 387 784 2.28E-114 T 11-10-2018 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:3.30.420.10 158 349 5.9E-71 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Pfam PF00136 DNA polymerase family B 378 746 1.3E-42 T 11-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:2.40.50.590 6 155 5.6E-40 T 11-10-2018 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:3.30.70.2250 41 110 5.6E-40 T 11-10-2018 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:3.90.1600.10 350 440 4.9E-29 T 11-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:3.90.1600.10 441 638 4.5E-56 T 11-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 ProSitePatterns PS00116 DNA polymerase family B signature. 548 556 - T 11-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 SUPERFAMILY SSF53098 5 391 3.09E-85 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 Gene3D G3DSA:1.10.132.60 645 789 2.9E-59 T 11-10-2018 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 SMART SM00486 155 560 7.0E-60 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 546 554 1.6E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 494 506 1.6E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c11490 544fcc5c4c890cb854ca3ae11e7d867c 789 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 417 430 1.6E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 PIRSF PIRSF006293 1 223 1.1E-81 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 1.2E-85 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 1.3E-82 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 Gene3D G3DSA:3.40.50.620 1 230 2.3E-79 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 50.311 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 VV93_v1c14470 2abaf5381c5883b2fa42533a96406710 231 SUPERFAMILY SSF52402 1 211 1.59E-66 T 11-10-2018 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Pfam PF00005 ABC transporter 304 455 2.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Gene3D G3DSA:3.40.50.300 4 278 1.6E-81 T 11-10-2018 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Gene3D G3DSA:3.40.50.300 279 541 7.2E-85 T 11-10-2018 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 SMART SM00382 35 235 1.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 SMART SM00382 312 504 4.0E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 506 538 0.001 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 267 1.4E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 SUPERFAMILY SSF52540 6 256 5.78E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 Pfam PF00005 ABC transporter 26 185 3.7E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c41810 0f0b6228c6466cabf9df370d8aa4e8ee 542 SUPERFAMILY SSF52540 294 526 5.69E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20200 f1cb43bc71d87affdaac1f08c4aa9f5c 102 Pfam PF09413 Putative prokaryotic signal transducing protein 2 68 5.8E-6 T 11-10-2018 IPR018551 Domain of unknown function DUF2007 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 Hamap MF_00492 Transaldolase [tal]. 2 316 51.051 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 Gene3D G3DSA:3.20.20.70 2 316 1.5E-138 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 SUPERFAMILY SSF51569 1 315 1.57E-114 T 11-10-2018 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 TIGRFAM TIGR00874 talAB: transaldolase 3 316 1.7E-154 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VV93_v1c40400 f898caaf06f06144b47bcd061ba08528 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 312 2.3E-101 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 VV93_v1c29400 801ebf06d3ec705bb866961d35a4cca0 186 SUPERFAMILY SSF55821 3 182 3.97E-58 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VV93_v1c29400 801ebf06d3ec705bb866961d35a4cca0 186 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 2 184 39.798 T 11-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 VV93_v1c29400 801ebf06d3ec705bb866961d35a4cca0 186 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 4 186 1.6E-44 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c29400 801ebf06d3ec705bb866961d35a4cca0 186 Gene3D G3DSA:3.90.870.10 2 184 5.2E-62 T 11-10-2018 VV93_v1c29400 801ebf06d3ec705bb866961d35a4cca0 186 Pfam PF01300 Telomere recombination 11 186 2.0E-50 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c19770 3bb1a13184d4870baaa6c495fab2afde 161 SUPERFAMILY SSF101327 1 147 7.98E-25 T 11-10-2018 IPR036255 YgfB-like superfamily VV93_v1c19770 3bb1a13184d4870baaa6c495fab2afde 161 Pfam PF03695 Uncharacterised protein family (UPF0149) 1 150 2.3E-25 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c19770 3bb1a13184d4870baaa6c495fab2afde 161 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 1 146 4.6E-35 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 SUPERFAMILY SSF55174 19 71 3.01E-9 T 11-10-2018 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 SUPERFAMILY SSF55120 96 312 1.76E-65 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 Pfam PF00849 RNA pseudouridylate synthase 102 247 3.2E-32 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 312 1.5E-92 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 Pfam PF01479 S4 domain 20 66 5.9E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 SMART SM00363 20 77 2.2E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 Gene3D G3DSA:3.10.290.10 8 74 5.7E-17 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c11850 52f27cb0fc8fc43e29ef496fa446812f 315 Gene3D G3DSA:3.30.2350.10 93 315 3.4E-81 T 11-10-2018 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 Pfam PF00809 Pterin binding enzyme 18 257 1.0E-91 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 SUPERFAMILY SSF51717 4 274 3.4E-106 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 Gene3D G3DSA:3.20.20.20 2 276 5.1E-113 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 6.6E-104 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 VV93_v1c24300 18740f977cb789d818c494e1b2f3dd61 276 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 SUPERFAMILY SSF55186 551 709 2.35E-52 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 SUPERFAMILY SSF101353 255 462 5.36E-60 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Pfam PF02272 DHHA1 domain 722 856 1.5E-29 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Gene3D G3DSA:2.40.30.130 462 551 9.5E-11 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Gene3D G3DSA:3.30.930.10 2 251 6.4E-120 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 860 199.044 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Gene3D G3DSA:3.30.54.20 623 676 2.0E-51 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 SUPERFAMILY SSF55681 3 254 2.73E-108 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Gene3D G3DSA:3.10.310.40 749 857 4.5E-32 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Pfam PF01411 tRNA synthetases class II (A) 7 555 1.4E-227 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 1.0E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 281 297 1.0E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 208 219 1.0E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 235 248 1.0E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 305 318 1.0E-31 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 SUPERFAMILY SSF50447 454 551 1.09E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 3.1E-18 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 SMART SM00863 652 695 1.1E-21 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 Gene3D G3DSA:3.30.980.10 562 696 2.0E-51 T 11-10-2018 VV93_v1c25140 ceacba304a4d2c346042bfb0583b4b2e 860 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 839 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 SMART SM00487 20 229 1.6E-56 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 Gene3D G3DSA:3.40.50.300 221 425 2.9E-48 T 11-10-2018 VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 Pfam PF00271 Helicase conserved C-terminal domain 231 339 3.3E-29 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 SMART SM00490 258 339 9.2E-31 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 Gene3D G3DSA:3.40.50.300 1 220 6.1E-75 T 11-10-2018 VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 SUPERFAMILY SSF52540 75 356 4.82E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 Pfam PF00270 DEAD/DEAH box helicase 25 195 8.7E-51 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c38800 b4396b68960a654655dd57acb8ac8c47 427 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 134 2.0E-10 T 11-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 SUPERFAMILY SSF51344 5 87 2.62E-24 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 SUPERFAMILY SSF46604 89 138 2.28E-13 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 85 3.4E-28 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 Gene3D G3DSA:1.20.5.440 92 135 6.4E-18 T 11-10-2018 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 Gene3D G3DSA:2.60.15.10 4 91 8.5E-31 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 91 4.0E-40 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 20.511 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29720 f50477ca2a47fd6b4f70fa3c99c223dd 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 1.6E-43 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c43770 1b965d0923f786a95e64f93081c6808a 336 Gene3D G3DSA:3.40.190.10 32 326 1.3E-89 T 11-10-2018 VV93_v1c43770 1b965d0923f786a95e64f93081c6808a 336 Pfam PF16868 NMT1-like family 32 326 1.2E-109 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VV93_v1c43770 1b965d0923f786a95e64f93081c6808a 336 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 1 326 3.4E-102 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VV93_v1c43770 1b965d0923f786a95e64f93081c6808a 336 SUPERFAMILY SSF53850 29 327 5.26E-63 T 11-10-2018 VV93_v1c43770 1b965d0923f786a95e64f93081c6808a 336 Gene3D G3DSA:3.40.190.10 120 263 1.3E-89 T 11-10-2018 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 Pfam PF00085 Thioredoxin 5 106 1.0E-32 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 PIRSF PIRSF000077 2 108 2.2E-42 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 1.9E-37 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 SUPERFAMILY SSF52833 3 107 5.96E-38 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-10 T 11-10-2018 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-10 T 11-10-2018 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-10 T 11-10-2018 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c29030 7a5a6dbc823aa0a99beec5e9f72ab496 108 Gene3D G3DSA:3.40.30.10 1 108 9.8E-35 T 11-10-2018 VV93_v1c45280 7080ed2021df37799da512e9be871941 486 Pfam PF02378 Phosphotransferase system, EIIC 132 413 1.6E-32 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c45280 7080ed2021df37799da512e9be871941 486 Gene3D G3DSA:3.30.1360.60 2 79 1.5E-19 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c45280 7080ed2021df37799da512e9be871941 486 Pfam PF00367 phosphotransferase system, EIIB 11 40 1.9E-10 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c45280 7080ed2021df37799da512e9be871941 486 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c45280 7080ed2021df37799da512e9be871941 486 SUPERFAMILY SSF55604 8 80 4.05E-18 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c32900 81c1483fbe2f2d246b90c6eafb5e67ae 417 SUPERFAMILY SSF52266 145 406 9.66E-21 T 11-10-2018 VV93_v1c32900 81c1483fbe2f2d246b90c6eafb5e67ae 417 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 146 404 6.7E-18 T 11-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 VV93_v1c32900 81c1483fbe2f2d246b90c6eafb5e67ae 417 Gene3D G3DSA:3.40.50.1110 132 410 4.7E-40 T 11-10-2018 IPR036514 SGNH hydrolase superfamily VV93_v1c32900 81c1483fbe2f2d246b90c6eafb5e67ae 417 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 146 157 - T 11-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 VV93_v1c32040 6d685fa8ba186ed611c63fee4fcf3968 301 SUPERFAMILY SSF103481 51 148 1.23E-9 T 11-10-2018 VV93_v1c32040 6d685fa8ba186ed611c63fee4fcf3968 301 Pfam PF00892 EamA-like transporter family 158 298 3.9E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32040 6d685fa8ba186ed611c63fee4fcf3968 301 Pfam PF00892 EamA-like transporter family 20 147 1.2E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32040 6d685fa8ba186ed611c63fee4fcf3968 301 SUPERFAMILY SSF103481 204 299 1.31E-17 T 11-10-2018 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 PRINTS PR01399 Enterobactin synthetase component D signature 47 67 1.0E-16 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 PRINTS PR01399 Enterobactin synthetase component D signature 77 95 1.0E-16 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 PRINTS PR01399 Enterobactin synthetase component D signature 155 171 1.0E-16 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 112 205 1.7E-10 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 SUPERFAMILY SSF56214 110 224 3.66E-12 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c42150 b6c94424abc526b1bbfae571051341d5 231 Gene3D G3DSA:3.90.470.20 28 131 2.0E-6 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 VV93_v1c22030 4049250dc1c0d130ce4e1e6cfe1e1482 233 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 27 179 1.2E-34 T 11-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 VV93_v1c22030 4049250dc1c0d130ce4e1e6cfe1e1482 233 SUPERFAMILY SSF55166 19 176 2.12E-18 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c22030 4049250dc1c0d130ce4e1e6cfe1e1482 233 Gene3D G3DSA:3.30.1380.10 1 187 3.5E-32 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 VV93_v1c24350 fae8210296ee498cdbf33715afab4829 340 Pfam PF13609 Gram-negative porin 10 309 2.3E-27 T 11-10-2018 VV93_v1c24350 fae8210296ee498cdbf33715afab4829 340 SUPERFAMILY SSF56935 22 340 1.07E-52 T 11-10-2018 VV93_v1c24350 fae8210296ee498cdbf33715afab4829 340 Gene3D G3DSA:2.40.160.10 22 340 6.7E-65 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 SUPERFAMILY SSF55781 7 168 4.58E-28 T 11-10-2018 VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 SMART SM00267 169 337 2.6E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 Pfam PF00990 Diguanylate cyclase, GGDEF domain 181 333 5.2E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 181 333 1.9E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 SUPERFAMILY SSF55073 185 332 2.28E-35 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 Gene3D G3DSA:3.30.450.40 26 176 1.0E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 SMART SM00065 25 177 5.4E-13 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 Gene3D G3DSA:3.30.70.270 177 338 7.4E-40 T 11-10-2018 VV93_v1c07180 44e380e6fcf26986bf007eedb440678c 340 Pfam PF13185 GAF domain 26 168 3.2E-17 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c39100 7d6f624b04330c849b1eae6c6ee2d7a9 617 Gene3D G3DSA:3.30.2010.10 93 188 8.6E-32 T 11-10-2018 VV93_v1c39100 7d6f624b04330c849b1eae6c6ee2d7a9 617 Pfam PF01435 Peptidase family M48 103 329 1.1E-26 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Pfam PF13091 PLD-like domain 135 266 2.5E-16 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Pfam PF13091 PLD-like domain 325 448 1.8E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 SMART SM00155 397 424 1.9E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 SMART SM00155 219 246 4.0E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Gene3D G3DSA:3.30.870.10 116 307 2.9E-37 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Pfam PF13396 Phospholipase_D-nuclease N-terminal 22 59 3.9E-6 T 11-10-2018 IPR027379 Cardiolipin synthase N-terminal VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 PIRSF PIRSF000850 384 474 0.87 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 PIRSF PIRSF000850 287 376 0.0075 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 PIRSF PIRSF000850 105 252 24.0 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 SUPERFAMILY SSF56024 273 469 3.36E-47 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Gene3D G3DSA:3.30.870.10 314 456 9.0E-24 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 SUPERFAMILY SSF56024 67 313 3.66E-50 T 11-10-2018 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 12 484 1.4E-149 T 11-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 VV93_v1c13110 eb1c247fa30a6fa570e2b2b85351e379 484 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 484 49.597 T 11-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 Gene3D G3DSA:3.40.309.10 221 419 2.2E-144 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 217 224 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 Gene3D G3DSA:3.40.605.10 21 439 2.2E-144 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 PIRSF PIRSF036492 1 474 2.4E-149 T 11-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 SUPERFAMILY SSF53720 4 465 4.84E-112 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c20080 178714d7f47ccf8494e1e3c9b17d0005 477 Pfam PF00171 Aldehyde dehydrogenase family 4 439 4.8E-85 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 Gene3D G3DSA:3.30.70.20 457 550 3.1E-33 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 195 5.8E-6 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 5.8E-6 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 3.2E-7 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 SUPERFAMILY SSF51905 3 454 6.24E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 SUPERFAMILY SSF54373 212 310 3.57E-32 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 SUPERFAMILY SSF54862 456 555 5.1E-26 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 452 553 4.4E-46 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 Gene3D G3DSA:3.30.9.90 79 456 5.8E-174 T 11-10-2018 VV93_v1c39690 ae59544e30fb0b993e33ff80f0a6b29c 555 Gene3D G3DSA:3.50.50.60 7 388 5.8E-174 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 Gene3D G3DSA:3.40.50.2300 160 326 9.5E-73 T 11-10-2018 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 SUPERFAMILY SSF53822 61 330 1.22E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.3E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.3E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 SUPERFAMILY SSF47413 1 60 1.78E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 SMART SM00354 1 71 2.8E-31 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 Gene3D G3DSA:3.40.50.2300 63 321 9.5E-73 T 11-10-2018 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.3E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.4E-36 T 11-10-2018 VV93_v1c23490 94bc5c83d85729b7745add8a9ac6cba3 333 Gene3D G3DSA:1.10.260.40 1 59 5.9E-22 T 11-10-2018 VV93_v1c16190 a06d67a0b05478f15ac86bad3ba052b8 288 SUPERFAMILY SSF56112 4 278 7.81E-40 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c16190 a06d67a0b05478f15ac86bad3ba052b8 288 Pfam PF03881 Fructosamine kinase 1 287 3.5E-122 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 VV93_v1c16190 a06d67a0b05478f15ac86bad3ba052b8 288 Gene3D G3DSA:3.90.1200.10 98 288 7.7E-62 T 11-10-2018 VV93_v1c16190 a06d67a0b05478f15ac86bad3ba052b8 288 Gene3D G3DSA:3.30.200.20 1 93 1.7E-21 T 11-10-2018 VV93_v1c16190 a06d67a0b05478f15ac86bad3ba052b8 288 PIRSF PIRSF006221 1 288 8.8E-108 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 Gene3D G3DSA:1.10.10.10 1 79 2.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.7E-29 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 Pfam PF01380 SIS domain 124 252 2.0E-24 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 SUPERFAMILY SSF53697 93 279 3.71E-40 T 11-10-2018 VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 Gene3D G3DSA:3.40.50.10490 94 277 5.1E-40 T 11-10-2018 VV93_v1c13530 7c5f0c7069a7d519a07c69a69acb7915 284 SUPERFAMILY SSF46689 1 80 1.58E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 SMART SM00342 12 95 4.2E-32 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 SUPERFAMILY SSF55136 124 289 3.84E-23 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 Gene3D G3DSA:1.10.10.60 49 109 1.9E-17 T 11-10-2018 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 SUPERFAMILY SSF46689 2 46 1.61E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 Gene3D G3DSA:1.10.10.60 1 48 1.6E-17 T 11-10-2018 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 64 79 1.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 79 95 1.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 Pfam PF06445 GyrI-like small molecule binding domain 157 287 3.8E-16 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 Pfam PF12833 Helix-turn-helix domain 18 97 1.5E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 Gene3D G3DSA:3.20.80.10 123 289 4.3E-28 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 SUPERFAMILY SSF46689 49 99 1.3E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 SMART SM00871 123 288 1.1E-17 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding VV93_v1c31700 e5dc1b814b700e343bb79d01cff6686e 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 49 91 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 SUPERFAMILY SSF47384 207 289 8.63E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 SMART SM00387 333 445 2.5E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 225 289 1.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 SMART SM00388 224 290 3.1E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 Gene3D G3DSA:3.30.565.10 293 442 4.9E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 441 8.4E-116 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 398 4.1E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 424 4.1E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 SMART SM00304 170 223 4.0E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 SUPERFAMILY SSF55874 279 441 3.14E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 442 7.5E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43840 1c1378ed07cfbd7cef505c494cd64a15 450 Gene3D G3DSA:1.10.287.130 174 291 2.6E-21 T 11-10-2018 VV93_v1c12220 973142f61ab59d546bf54968b41ea810 347 Gene3D G3DSA:1.10.3720.10 133 339 1.9E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12220 973142f61ab59d546bf54968b41ea810 347 SUPERFAMILY SSF161098 139 325 3.4E-19 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12220 973142f61ab59d546bf54968b41ea810 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 161 341 8.8E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c37310 2f5f62cc94a5835764ad3a7ff0d383de 189 Gene3D G3DSA:2.40.128.110 23 189 6.4E-48 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VV93_v1c37310 2f5f62cc94a5835764ad3a7ff0d383de 189 SMART SM00867 24 187 2.3E-59 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VV93_v1c37310 2f5f62cc94a5835764ad3a7ff0d383de 189 SUPERFAMILY SSF101874 23 188 1.31E-48 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VV93_v1c37310 2f5f62cc94a5835764ad3a7ff0d383de 189 Hamap MF_00780 Protein YceI [yceI]. 1 189 46.254 T 11-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI VV93_v1c37310 2f5f62cc94a5835764ad3a7ff0d383de 189 Pfam PF04264 YceI-like domain 25 184 2.8E-34 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 273 431 2.9E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 Pfam PF00990 Diguanylate cyclase, GGDEF domain 275 427 6.8E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 SUPERFAMILY SSF55073 280 430 1.33E-39 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 Gene3D G3DSA:3.30.70.270 261 432 2.4E-48 T 11-10-2018 VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 SMART SM00267 264 431 5.0E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 SUPERFAMILY SSF49785 40 212 3.23E-16 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c13700 6fb2fa97579b3712df5e160f02ead2e8 442 Gene3D G3DSA:2.60.120.430 31 213 6.6E-7 T 11-10-2018 VV93_v1c30740 74d2664f040cdd24546bfffd841e79a4 694 Gene3D G3DSA:2.40.170.20 174 694 6.6E-55 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c30740 74d2664f040cdd24546bfffd841e79a4 694 Gene3D G3DSA:2.170.130.10 37 158 2.8E-14 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c30740 74d2664f040cdd24546bfffd841e79a4 694 SUPERFAMILY SSF56935 40 694 3.19E-76 T 11-10-2018 VV93_v1c30740 74d2664f040cdd24546bfffd841e79a4 694 Pfam PF00593 TonB dependent receptor 209 693 2.1E-32 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c30740 74d2664f040cdd24546bfffd841e79a4 694 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 153 5.6E-11 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c24050 b0ff05d762042d052f02c10836268c71 362 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 175 333 1.4E-40 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24050 b0ff05d762042d052f02c10836268c71 362 Gene3D G3DSA:3.30.70.270 166 334 1.3E-46 T 11-10-2018 VV93_v1c24050 b0ff05d762042d052f02c10836268c71 362 SMART SM00267 166 333 8.5E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24050 b0ff05d762042d052f02c10836268c71 362 Pfam PF00990 Diguanylate cyclase, GGDEF domain 178 329 1.3E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24050 b0ff05d762042d052f02c10836268c71 362 SUPERFAMILY SSF55073 182 333 5.89E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Gene3D G3DSA:2.40.50.140 131 188 1.5E-21 T 11-10-2018 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 122 1.2E-12 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 SMART SM00841 132 187 1.6E-28 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Pfam PF09285 Elongation factor P, C-terminal 132 187 7.7E-21 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 PIRSF PIRSF005901 1 188 1.0E-60 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Gene3D G3DSA:2.40.50.140 67 130 8.1E-14 T 11-10-2018 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 SMART SM01185 69 124 1.9E-13 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 188 8.1E-91 T 11-10-2018 IPR011897 Translation elongation factor P-like, YeiP VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Gene3D G3DSA:2.30.30.30 1 65 1.0E-14 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 SUPERFAMILY SSF50104 1 65 5.96E-12 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 188 42.202 T 11-10-2018 IPR011897 Translation elongation factor P-like, YeiP VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 62 6.2E-18 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 SUPERFAMILY SSF50249 67 129 5.14E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c11460 919a5eb0e444ccf0b1e533a349441311 188 SUPERFAMILY SSF50249 132 188 1.4E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 SMART SM00304 224 278 2.5E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 Gene3D G3DSA:3.30.450.20 36 181 2.1E-53 T 11-10-2018 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 355 521 7.7E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 Gene3D G3DSA:1.10.287.950 224 555 6.1E-69 T 11-10-2018 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 SUPERFAMILY SSF58104 246 555 3.4E-72 T 11-10-2018 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 SMART SM00283 282 554 1.0E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 SMART SM01049 42 131 1.1E-32 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 Pfam PF17200 Single Cache domain 2 45 188 2.1E-38 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c02760 8f89569c30e67d121d318de6fb060c39 555 Pfam PF00672 HAMP domain 225 274 3.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c39440 46badac60f6a08bd44feb9fd866e3324 195 SUPERFAMILY SSF46689 2 64 3.13E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c39440 46badac60f6a08bd44feb9fd866e3324 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 56 6.5E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c39440 46badac60f6a08bd44feb9fd866e3324 195 Gene3D G3DSA:1.10.357.10 73 190 2.2E-14 T 11-10-2018 VV93_v1c39440 46badac60f6a08bd44feb9fd866e3324 195 Gene3D G3DSA:1.10.10.60 1 65 9.9E-20 T 11-10-2018 VV93_v1c39440 46badac60f6a08bd44feb9fd866e3324 195 SUPERFAMILY SSF48498 81 174 3.81E-14 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 PIRSF PIRSF004682 1 186 5.7E-64 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 155 3.3E-37 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 178 3.7E-81 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 Pfam PF13242 HAD-hyrolase-like 107 176 5.5E-13 T 11-10-2018 VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 Gene3D G3DSA:3.40.50.1000 2 187 2.7E-60 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 153 3.3E-39 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 VV93_v1c08300 a4656ea3d3af869eca5f5612743b38fe 188 SUPERFAMILY SSF56784 4 181 5.75E-48 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 Gene3D G3DSA:3.40.309.10 255 443 4.6E-177 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 24 469 1.8E-206 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 Pfam PF00171 Aldehyde dehydrogenase family 17 470 2.6E-165 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 Gene3D G3DSA:3.40.605.10 15 466 4.6E-177 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 SUPERFAMILY SSF53720 4 474 5.89E-166 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c31070 876047f65d8425d3b11cea0395d31fa2 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 SMART SM00257 48 92 2.1E-9 T 11-10-2018 IPR018392 LysM domain VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 Gene3D G3DSA:3.10.350.10 46 91 1.4E-11 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 Gene3D G3DSA:2.70.70.10 178 307 5.5E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 Pfam PF01551 Peptidase family M23 209 303 2.3E-31 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 SUPERFAMILY SSF51261 48 307 1.83E-50 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c25200 5b0a8d777814ec050600c873154689ee 308 Pfam PF01476 LysM domain 49 91 9.6E-10 T 11-10-2018 IPR018392 LysM domain VV93_v1c06470 3ed59c0ba6cb6cb0adb461c566a78bea 107 Gene3D G3DSA:3.30.160.100 1 105 5.1E-33 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like VV93_v1c06470 3ed59c0ba6cb6cb0adb461c566a78bea 107 SUPERFAMILY SSF69754 1 102 1.09E-29 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like VV93_v1c06470 3ed59c0ba6cb6cb0adb461c566a78bea 107 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 7.7E-31 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VV93_v1c06470 3ed59c0ba6cb6cb0adb461c566a78bea 107 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 2.7E-22 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 Pfam PF11953 Domain of unknown function (DUF3470) 68 107 1.0E-16 T 11-10-2018 IPR022569 Ferredoxin, C-terminal VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 SUPERFAMILY SSF54862 3 96 7.38E-23 T 11-10-2018 VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 Gene3D G3DSA:3.30.70.20 2 103 1.1E-25 T 11-10-2018 VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 Pfam PF13187 4Fe-4S dicluster domain 8 55 7.2E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 5.1E-11 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 5.1E-11 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 VV93_v1c31670 09a67934b7d69518b0134e25b50902be 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 5.1E-11 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 SMART SM00155 448 475 0.025 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 SMART SM00155 214 241 0.3 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 Gene3D G3DSA:3.30.870.10 103 296 6.8E-36 T 11-10-2018 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 Pfam PF13091 PLD-like domain 126 273 1.6E-15 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 Pfam PF13091 PLD-like domain 360 494 9.7E-22 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 Gene3D G3DSA:3.30.870.10 336 525 2.1E-37 T 11-10-2018 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 SUPERFAMILY SSF56024 330 498 1.73E-34 T 11-10-2018 VV93_v1c10810 3c79e3d3b50613ce2d2aa3327c4054fb 554 SUPERFAMILY SSF56024 66 291 3.66E-40 T 11-10-2018 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 424 440 1.2E-21 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 466 484 1.2E-21 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 406 420 1.2E-21 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 490 505 1.2E-21 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 631 702 4.7E-8 T 11-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 Gene3D G3DSA:1.10.1740.190 336 481 8.5E-30 T 11-10-2018 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 Pfam PF08453 Peptidase family M9 N-terminal 61 245 4.3E-48 T 11-10-2018 IPR013661 Peptidase M9, collagenase, N-terminal domain VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 Pfam PF01752 Collagenase 306 590 5.7E-108 T 11-10-2018 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004222|GO:0005576|GO:0006508|GO:0008270 VV93_v1c31910 c090dcfb22872ad3efbc4edb183cd4a4 715 Gene3D G3DSA:2.60.120.380 614 713 1.6E-10 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:2.20.25.620 330 353 4.7E-14 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:1.10.287.470 120 185 1.6E-9 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Pfam PF13533 Biotin-lipoyl like 64 111 1.6E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:2.40.50.100 220 255 4.7E-14 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:1.10.287.470 97 114 3.3E-7 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:2.40.50.100 62 96 3.3E-7 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:2.40.30.170 256 329 4.7E-14 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 Gene3D G3DSA:1.10.287.470 196 219 4.7E-14 T 11-10-2018 VV93_v1c33350 05c9153f866de55acdf18f0a32105ddb 376 SUPERFAMILY SSF111369 61 115 8.5E-7 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.2090.10 179 270 2.5E-264 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.70.1440 655 856 2.5E-264 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.70.1320 135 328 2.5E-264 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.70.1430 556 654 2.5E-264 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.70.1430 40 804 2.5E-264 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:3.30.2090.10 706 796 2.5E-264 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82714 708 788 1.09E-9 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:1.20.1640.10 10 508 2.5E-264 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.7E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82866 292 491 3.01E-37 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82693 40 135 2.75E-20 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Pfam PF00873 AcrB/AcrD/AcrF family 3 1011 4.5E-175 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82714 184 266 3.4E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82866 795 1015 5.1E-44 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 SUPERFAMILY SSF82693 136 325 1.99E-21 T 11-10-2018 VV93_v1c36990 e8c7d9816c661ba00c8c6085fe6249c5 1019 Gene3D G3DSA:1.20.1640.10 509 1008 2.5E-264 T 11-10-2018 VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 163 327 6.4E-53 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 Gene3D G3DSA:3.40.50.2300 1 141 2.9E-31 T 11-10-2018 VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 SMART SM00267 153 329 1.8E-64 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 SUPERFAMILY SSF55073 169 327 3.84E-49 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 Pfam PF00072 Response regulator receiver domain 8 112 7.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 SMART SM00448 5 119 8.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 Pfam PF00990 Diguanylate cyclase, GGDEF domain 165 325 5.7E-51 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 Gene3D G3DSA:3.30.70.270 149 327 3.5E-60 T 11-10-2018 VV93_v1c38770 9d560a5561845612b7c7684f30ff0b9e 338 SUPERFAMILY SSF52172 3 144 5.69E-34 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c39450 ba0e2f99cb402d8bd0e4a631e87d9fc2 132 SUPERFAMILY SSF117856 3 130 3.14E-32 T 11-10-2018 VV93_v1c39450 ba0e2f99cb402d8bd0e4a631e87d9fc2 132 Gene3D G3DSA:3.30.1330.80 2 132 2.1E-41 T 11-10-2018 VV93_v1c39450 ba0e2f99cb402d8bd0e4a631e87d9fc2 132 Pfam PF03479 Domain of unknown function (DUF296) 6 109 6.5E-20 T 11-10-2018 IPR005175 PPC domain VV93_v1c29510 3860fb30f5617094fc18cb8aff2a13d8 481 Pfam PF02386 Cation transport protein 60 475 5.9E-51 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VV93_v1c29510 3860fb30f5617094fc18cb8aff2a13d8 481 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 464 1.3E-115 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VV93_v1c29510 3860fb30f5617094fc18cb8aff2a13d8 481 PIRSF PIRSF006247 1 481 2.1E-165 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 SUPERFAMILY SSF47616 76 208 1.16E-43 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 Gene3D G3DSA:1.20.1050.10 93 209 5.7E-25 T 11-10-2018 VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 TIGRFAM TIGR02182 GRXB: glutaredoxin, GrxB family 2 208 1.4E-91 T 11-10-2018 IPR011901 Glutaredoxin-2 GO:0005829|GO:0097573 VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 Pfam PF04399 Glutaredoxin 2, C terminal domain 85 208 1.8E-35 T 11-10-2018 IPR007494 Glutaredoxin 2, C-terminal VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 Gene3D G3DSA:3.40.30.10 8 83 2.3E-24 T 11-10-2018 VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 74 7.4E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c44700 4e18e2bce2024e0b991a9d8dba92c23c 209 SUPERFAMILY SSF52833 1 69 5.99E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c07110 2f547532b7c6d517094711694be52b4c 316 Pfam PF13464 Domain of unknown function (DUF4115) 241 314 2.6E-23 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 VV93_v1c07110 2f547532b7c6d517094711694be52b4c 316 Pfam PF13413 Helix-turn-helix domain 25 83 6.9E-18 T 11-10-2018 VV93_v1c07110 2f547532b7c6d517094711694be52b4c 316 SUPERFAMILY SSF47413 17 93 9.48E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c07110 2f547532b7c6d517094711694be52b4c 316 Gene3D G3DSA:1.10.260.40 11 120 8.6E-23 T 11-10-2018 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Hamap MF_01254 L-fucose isomerase [fucI]. 1 582 67.686 T 11-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Gene3D G3DSA:3.20.14.10 337 582 3.4E-123 T 11-10-2018 IPR038393 L-fucose isomerase, domain 3 superfamily KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Gene3D G3DSA:3.40.50.1070 1 173 2.7E-87 T 11-10-2018 IPR038391 L-fucose isomerase, domain 1 superfamily KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Pfam PF02952 L-fucose isomerase, C-terminal domain 382 546 3.7E-52 T 11-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 SUPERFAMILY SSF53743 2 351 5.1E-157 T 11-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Pfam PF07882 L-fucose isomerase, second N-terminal domain 173 350 1.0E-92 T 11-10-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 SUPERFAMILY SSF50443 352 582 1.12E-118 T 11-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Gene3D G3DSA:3.40.275.10 174 336 2.2E-79 T 11-10-2018 IPR038392 L-fucose isomerase, domain 2 superfamily KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 TIGRFAM TIGR01089 fucI: L-fucose isomerase 4 582 0.0 T 11-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 VV93_v1c19200 6dc236d2288b28f4d3244bf9260d6b0c 582 Pfam PF07881 L-fucose isomerase, first N-terminal domain 5 172 1.3E-81 T 11-10-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 SUPERFAMILY SSF55681 1 310 2.19E-102 T 11-10-2018 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 SUPERFAMILY SSF52954 317 412 1.64E-26 T 11-10-2018 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 Gene3D G3DSA:3.30.930.10 1 313 2.3E-115 T 11-10-2018 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 Gene3D G3DSA:3.40.50.800 316 412 1.5E-24 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 PIRSF PIRSF001549 1 412 1.1E-121 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 Pfam PF13393 Histidyl-tRNA synthetase 1 302 3.6E-43 T 11-10-2018 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 410 31.624 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 1 399 4.0E-154 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 VV93_v1c07130 ab3465e1ae29fcd609bc8ada73384631 412 Pfam PF03129 Anticodon binding domain 319 410 8.5E-11 T 11-10-2018 IPR004154 Anticodon-binding VV93_v1c11400 e7cff711f6c96ab4d5e7d0d2ff5cd408 41 ProDom PD926058 BIOSYNTHESIS PEPTIDE LEADER AROMATIC VC1176 VV1222 OPERON ACID AMINO AMINO-ACID 1 41 1.0E-7 T 11-10-2018 IPR012639 Tryptophan operon leader peptide VV93_v1c11400 e7cff711f6c96ab4d5e7d0d2ff5cd408 41 Pfam PF08056 Tryptophan operon leader peptide 1 41 1.2E-30 T 11-10-2018 IPR012639 Tryptophan operon leader peptide VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 SUPERFAMILY SSF63411 470 693 3.84E-59 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Gene3D G3DSA:3.30.830.10 618 877 9.2E-108 T 11-10-2018 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Gene3D G3DSA:3.30.830.10 239 468 7.9E-73 T 11-10-2018 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Pfam PF16187 Middle or third domain of peptidase_M16 366 643 6.1E-81 T 11-10-2018 IPR032632 Peptidase M16, middle/third domain VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Gene3D G3DSA:3.30.830.10 1 228 1.1E-85 T 11-10-2018 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Gene3D G3DSA:3.30.830.10 470 852 9.2E-108 T 11-10-2018 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 42 65 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Pfam PF05193 Peptidase M16 inactive domain 182 358 2.8E-24 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Pfam PF05193 Peptidase M16 inactive domain 648 823 1.5E-9 T 11-10-2018 IPR007863 Peptidase M16, C-terminal VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 SUPERFAMILY SSF63411 703 909 6.46E-44 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 SUPERFAMILY SSF63411 233 468 4.63E-78 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 SUPERFAMILY SSF63411 4 226 1.15E-60 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c21410 481195880be5dc5ac188c27f263ed22e 925 Pfam PF00675 Insulinase (Peptidase family M16) 21 158 1.3E-36 T 11-10-2018 IPR011765 Peptidase M16, N-terminal VV93_v1c37280 64f049e32927434e8b89886d80130719 267 SUPERFAMILY SSF141868 30 260 1.02E-40 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37280 64f049e32927434e8b89886d80130719 267 SMART SM00052 20 257 1.5E-10 T 11-10-2018 IPR001633 EAL domain VV93_v1c37280 64f049e32927434e8b89886d80130719 267 Gene3D G3DSA:3.20.20.450 23 264 4.3E-41 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37280 64f049e32927434e8b89886d80130719 267 Pfam PF00563 EAL domain 28 252 3.3E-48 T 11-10-2018 IPR001633 EAL domain VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 305 46.185 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 SUPERFAMILY SSF51395 1 303 2.01E-86 T 11-10-2018 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 Gene3D G3DSA:3.20.20.70 1 232 3.2E-74 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 Pfam PF01207 Dihydrouridine synthase (Dus) 1 298 2.0E-109 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 1 304 1.1E-126 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 Gene3D G3DSA:1.10.1200.80 236 306 3.4E-8 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 PIRSF PIRSF006621 1 305 6.3E-97 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c28560 35da73cdf74a5ecd558539bb186a92bc 306 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 78 96 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 SUPERFAMILY SSF55920 3 280 9.03E-81 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 197 215 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 Pfam PF00557 Metallopeptidase family M24 12 271 3.1E-46 T 11-10-2018 IPR000994 Peptidase M24 VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 Hamap MF_01974 Methionine aminopeptidase [map]. 3 280 40.49 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 279 4.8E-82 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 VV93_v1c22770 05e59a98266ce73064cbe000ca9a283c 292 Gene3D G3DSA:3.90.230.10 1 290 2.7E-103 T 11-10-2018 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Pfam PF02010 REJ domain 604 738 2.8E-6 T 11-10-2018 IPR002859 PKD/REJ-like domain VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF51055 783 841 1.22E-14 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF81296 21 133 1.68E-32 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:2.60.40.10 695 784 1.2E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SMART SM00636 159 575 2.0E-162 T 11-10-2018 IPR011583 Chitinase II GO:0008061 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF49299 696 783 7.85E-5 T 11-10-2018 IPR035986 PKD domain superfamily VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF54556 461 546 2.33E-17 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Pfam PF00704 Glycosyl hydrolases family 18 161 575 5.1E-88 T 11-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SMART SM00495 794 839 4.4E-14 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:3.20.20.80 162 577 1.4E-173 T 11-10-2018 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Pfam PF08329 Chitinase A, N-terminal domain 21 156 6.9E-56 T 11-10-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:2.10.10.20 794 837 7.4E-17 T 11-10-2018 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:3.10.50.10 466 551 1.4E-173 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:2.60.40.10 596 694 8.2E-24 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF51445 135 588 5.69E-90 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 ProSitePatterns PS01095 Chitinases family 18 active site. 307 315 - T 11-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SUPERFAMILY SSF49299 596 688 1.69E-8 T 11-10-2018 IPR035986 PKD domain superfamily VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 Gene3D G3DSA:2.60.40.10 22 132 2.2E-44 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SMART SM00089 51 134 3.8 T 11-10-2018 IPR022409 PKD/Chitinase domain VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SMART SM00089 700 786 0.15 T 11-10-2018 IPR022409 PKD/Chitinase domain VV93_v1c30530 0d45dbb20bf604763a8c96b813409ca7 845 SMART SM00089 600 690 3.0E-7 T 11-10-2018 IPR022409 PKD/Chitinase domain VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 SUPERFAMILY SSF52540 8 237 8.71E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 Gene3D G3DSA:3.40.50.300 3 247 1.7E-70 T 11-10-2018 VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 Pfam PF00005 ABC transporter 23 175 3.6E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 PIRSF PIRSF039085 4 247 2.0E-87 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VV93_v1c42010 d81df5a8c1865367269f12ff52094a2a 247 SMART SM00382 32 223 2.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 Gene3D G3DSA:1.10.8.10 1 55 9.3E-26 T 11-10-2018 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 SUPERFAMILY SSF54713 141 277 5.63E-46 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 Pfam PF00889 Elongation factor TS 70 260 8.1E-62 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 Gene3D G3DSA:3.30.479.20 56 139 2.7E-26 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 Hamap MF_00050 Elongation factor Ts [tsf]. 1 279 75.839 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 SUPERFAMILY SSF54713 55 137 2.83E-18 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 SUPERFAMILY SSF46934 3 53 2.21E-18 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 279 3.6E-104 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 VV93_v1c22750 5a5bb84f64b06e4d9579aa670be8c1b7 280 Gene3D G3DSA:1.10.286.20 184 223 1.1E-22 T 11-10-2018 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 Pfam PF02274 Amidinotransferase 18 403 3.4E-111 T 11-10-2018 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 TIGRFAM TIGR01078 arcA: arginine deiminase 4 406 3.7E-171 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 Gene3D G3DSA:1.10.3930.10 68 148 1.4E-146 T 11-10-2018 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PIRSF PIRSF006356 1 406 1.1E-158 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 362 376 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 385 403 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 342 359 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 4.2E-44 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 Gene3D G3DSA:3.75.10.10 6 403 1.4E-146 T 11-10-2018 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 Hamap MF_00242 Arginine deiminase [arcA]. 1 406 45.031 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 VV93_v1c26410 c0887ee31fa54da5ba48053f3c353ac1 406 SUPERFAMILY SSF55909 3 406 3.39E-129 T 11-10-2018 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SMART SM00073 826 924 9.5E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Pfam PF00512 His Kinase A (phospho-acceptor) domain 291 355 2.8E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Pfam PF00072 Response regulator receiver domain 668 778 1.4E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF47226 762 916 5.23E-21 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SMART SM00304 198 250 3.3E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF47384 275 356 1.04E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF158472 200 247 4.84E-6 T 11-10-2018 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF55874 344 517 1.02E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Gene3D G3DSA:3.40.50.2300 654 787 4.2E-39 T 11-10-2018 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Pfam PF01627 Hpt domain 836 917 1.5E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF52172 532 644 1.27E-5 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SMART SM00387 402 518 5.0E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 515 9.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 471 9.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 457 9.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 496 9.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Gene3D G3DSA:1.20.1480.50 164 270 1.8E-7 T 11-10-2018 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 516 1.1E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Gene3D G3DSA:1.10.287.130 277 356 7.5E-27 T 11-10-2018 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SUPERFAMILY SSF52172 664 782 2.7E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 175 8.0E-51 T 11-10-2018 IPR019247 Histidine kinase BarA, N-terminal VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Gene3D G3DSA:3.30.565.10 357 521 6.2E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SMART SM00448 666 779 7.4E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 Gene3D G3DSA:1.20.120.160 816 928 4.7E-29 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c25320 0267556f6ce320b354023ceb157d111e 928 SMART SM00388 290 355 3.4E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 Gene3D G3DSA:2.40.50.140 4 67 8.9E-29 T 11-10-2018 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 PRINTS PR00050 Cold shock protein signature 7 22 7.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 PRINTS PR00050 Cold shock protein signature 42 60 7.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 PRINTS PR00050 Cold shock protein signature 27 36 7.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 11-10-2018 IPR019844 Cold-shock conserved site VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 SMART SM00357 6 69 3.9E-30 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 4.9E-29 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 SUPERFAMILY SSF50249 3 68 8.81E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c40110 9c5d6022174155d7105ccb88ca5aabe1 69 PIRSF PIRSF002599 1 69 2.2E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 Gene3D G3DSA:1.20.1560.10 144 456 6.9E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 Gene3D G3DSA:3.90.70.10 6 127 1.9E-15 T 11-10-2018 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 Gene3D G3DSA:3.40.50.300 457 705 1.3E-73 T 11-10-2018 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 SUPERFAMILY SSF52540 464 698 8.99E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 SMART SM00382 497 682 1.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 Pfam PF00664 ABC transporter transmembrane region 161 419 2.6E-18 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 Pfam PF00005 ABC transporter 488 637 3.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 SUPERFAMILY SSF90123 142 455 1.96E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 ProSitePatterns PS00211 ABC transporters family signature. 609 623 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c33160 0a6971f29031fee1370d20fb97a29171 717 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 10 698 8.6E-262 T 11-10-2018 IPR017750 ATPase, type I secretion system VV93_v1c32780 a2ed56bb9c787038cdb5c8444bae807a 249 SMART SM00481 5 79 1.3E-6 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VV93_v1c32780 a2ed56bb9c787038cdb5c8444bae807a 249 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 2 245 53.823 T 11-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 VV93_v1c32780 a2ed56bb9c787038cdb5c8444bae807a 249 SUPERFAMILY SSF89550 4 243 1.28E-59 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VV93_v1c32780 a2ed56bb9c787038cdb5c8444bae807a 249 Gene3D G3DSA:3.20.20.140 3 247 7.5E-61 T 11-10-2018 VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 SMART SM00382 28 220 1.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 4 249 1.7E-125 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 Gene3D G3DSA:3.40.50.300 4 246 5.5E-62 T 11-10-2018 VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 Pfam PF00005 ABC transporter 19 174 3.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 SUPERFAMILY SSF52540 4 235 4.58E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33590 7a31b7c1a8fe618e2fbf423d8da72368 249 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3 81 2.0E-32 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 SUPERFAMILY SSF51735 42 148 4.89E-5 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 84 320 1.2E-95 T 11-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 396 53.504 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 Gene3D G3DSA:3.40.50.720 1 398 9.8E-162 T 11-10-2018 VV93_v1c37610 096a75d3919658b62fbf25d5a0c260f1 400 Pfam PF07055 Enoyl reductase FAD binding domain 327 390 1.7E-24 T 11-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c19610 d608485c3c89c034fd6c05072346eebc 147 Pfam PF10980 Protein of unknown function (DUF2787) 16 144 5.5E-48 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c19610 d608485c3c89c034fd6c05072346eebc 147 Gene3D G3DSA:3.10.450.430 1 146 3.4E-55 T 11-10-2018 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PIRSF PIRSF015592 1 210 4.3E-85 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 Gene3D G3DSA:3.40.630.20 1 212 1.5E-80 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 211 2.4E-80 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 SUPERFAMILY SSF53182 1 211 5.89E-72 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 160 172 8.5E-44 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 8.5E-44 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 8.5E-44 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 8.5E-44 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 8.5E-44 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 11-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 Pfam PF01470 Pyroglutamyl peptidase 3 199 4.2E-74 T 11-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 VV93_v1c30980 9343d549df2c288da936b76abcf5c35b 212 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 198 38.371 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 246 - T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 Gene3D G3DSA:1.10.3730.10 165 272 6.7E-35 T 11-10-2018 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 SUPERFAMILY SSF48179 162 270 1.07E-30 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 PIRSF PIRSF000193 3 270 1.6E-75 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 268 6.6E-30 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 268 25.266 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 99 6.1E-25 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 Gene3D G3DSA:3.40.50.720 2 164 9.7E-50 T 11-10-2018 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 1.4E-72 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 VV93_v1c25810 f88dd9eddd0d32af240a44f5490d777d 272 SUPERFAMILY SSF51735 4 161 3.85E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 SUPERFAMILY SSF56931 14 255 1.26E-71 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 Gene3D G3DSA:2.40.230.10 9 255 1.2E-67 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 Pfam PF02253 Phospholipase A1 19 252 2.3E-60 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 54 71 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 203 220 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 225 245 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 123 137 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 138 156 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c13750 e3c1bbc8d20bdea77c688c0b2aeb23d1 255 PRINTS PR01486 Bacterial phospholipase A1 protein signature 170 188 4.1E-26 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 VV93_v1c19750 b93f76bd06690f1a91a8fde2bcfaab72 149 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 15 142 2.0E-69 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VV93_v1c19750 b93f76bd06690f1a91a8fde2bcfaab72 149 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 2 145 31.432 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VV93_v1c19750 b93f76bd06690f1a91a8fde2bcfaab72 149 Pfam PF06610 L-alanine exporter 8 142 4.1E-68 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 VV93_v1c34580 df4079357200c02f554e071c37378b39 335 SUPERFAMILY SSF53850 26 325 3.49E-63 T 11-10-2018 VV93_v1c34580 df4079357200c02f554e071c37378b39 335 PIRSF PIRSF002825 5 328 6.8E-79 T 11-10-2018 IPR026045 Ferric binding protein VV93_v1c34580 df4079357200c02f554e071c37378b39 335 Pfam PF13343 Bacterial extracellular solute-binding protein 74 292 1.8E-26 T 11-10-2018 VV93_v1c34580 df4079357200c02f554e071c37378b39 335 Gene3D G3DSA:3.40.190.10 29 296 1.3E-78 T 11-10-2018 VV93_v1c34580 df4079357200c02f554e071c37378b39 335 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 5 332 1.4E-159 T 11-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative VV93_v1c34580 df4079357200c02f554e071c37378b39 335 Gene3D G3DSA:3.40.190.10 132 310 1.3E-78 T 11-10-2018 VV93_v1c07380 3979028de3ec2b931dcf23a9567cb7af 156 Pfam PF01381 Helix-turn-helix 84 135 8.1E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c07380 3979028de3ec2b931dcf23a9567cb7af 156 Gene3D G3DSA:1.10.260.40 79 148 1.7E-7 T 11-10-2018 VV93_v1c07380 3979028de3ec2b931dcf23a9567cb7af 156 SUPERFAMILY SSF47413 80 140 1.13E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c07380 3979028de3ec2b931dcf23a9567cb7af 156 SMART SM00530 83 139 9.3E-4 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c12280 6cf316717dd5d42f5313b4f0906a3080 203 SUPERFAMILY SSF47240 51 201 1.19E-57 T 11-10-2018 IPR009078 Ferritin-like superfamily VV93_v1c12280 6cf316717dd5d42f5313b4f0906a3080 203 PIRSF PIRSF020736 1 203 6.8E-71 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VV93_v1c12280 6cf316717dd5d42f5313b4f0906a3080 203 Gene3D G3DSA:1.20.1260.10 42 203 4.9E-56 T 11-10-2018 IPR012347 Ferritin-like VV93_v1c12280 6cf316717dd5d42f5313b4f0906a3080 203 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 1 198 1.6E-94 T 11-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 65 1.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 SUPERFAMILY SSF53850 91 291 2.17E-46 T 11-10-2018 VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 Gene3D G3DSA:1.10.10.10 5 93 4.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 Pfam PF03466 LysR substrate binding domain 90 290 1.1E-44 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 Gene3D G3DSA:3.40.190.10 94 287 9.7E-67 T 11-10-2018 VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 Gene3D G3DSA:3.40.190.10 165 261 9.7E-67 T 11-10-2018 VV93_v1c07840 fc022c6a3edbf9ccd618b0456ac1a1b2 294 SUPERFAMILY SSF46785 6 90 7.72E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 SMART SM00342 182 264 2.2E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 SUPERFAMILY SSF46689 171 215 2.06E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 264 4.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 233 248 4.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 Pfam PF02311 AraC-like ligand binding domain 15 141 2.7E-19 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 Gene3D G3DSA:1.10.10.60 167 265 3.1E-30 T 11-10-2018 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 Pfam PF12833 Helix-turn-helix domain 188 264 4.9E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 SUPERFAMILY SSF46689 218 264 8.06E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c29110 04c95643c07591fb556ff44528ba5d62 265 SUPERFAMILY SSF51215 24 140 1.31E-18 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 SUPERFAMILY SSF46689 170 216 5.38E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 SUPERFAMILY SSF46689 220 269 6.72E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 SMART SM00342 183 266 2.1E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 SUPERFAMILY SSF51215 30 133 2.48E-5 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 9.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 9.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 Pfam PF12833 Helix-turn-helix domain 189 267 2.7E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 220 262 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 Gene3D G3DSA:1.10.10.60 218 270 2.3E-14 T 11-10-2018 VV93_v1c45090 80b28fce7a569b46ef27a2131c7b9afc 272 Gene3D G3DSA:1.10.10.60 169 217 2.1E-10 T 11-10-2018 VV93_v1c42950 34257076f1be5af7ba4b048207a8896c 155 Gene3D G3DSA:2.60.120.260 19 153 1.2E-25 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c42950 34257076f1be5af7ba4b048207a8896c 155 Pfam PF00754 F5/8 type C domain 26 132 9.5E-13 T 11-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain VV93_v1c42950 34257076f1be5af7ba4b048207a8896c 155 SUPERFAMILY SSF49785 19 144 1.28E-20 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 Gene3D G3DSA:1.10.3210.10 218 423 1.9E-49 T 11-10-2018 VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 TIGRFAM TIGR00277 HDIG: HDIG domain 248 338 3.8E-10 T 11-10-2018 IPR006675 HDIG domain VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 Pfam PF01966 HD domain 248 369 6.8E-20 T 11-10-2018 IPR006674 HD domain VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 Pfam PF01966 HD domain 37 148 1.9E-5 T 11-10-2018 IPR006674 HD domain VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 Gene3D G3DSA:1.10.3210.10 20 197 1.1E-17 T 11-10-2018 VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 SUPERFAMILY SSF109604 241 404 1.38E-30 T 11-10-2018 VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 SUPERFAMILY SSF109604 25 194 9.42E-14 T 11-10-2018 VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 SMART SM00471 244 379 4.8E-12 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c31090 9e80002b5d15eba801d8b78f64987a32 441 SMART SM00471 30 159 12.0 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 PIRSF PIRSF000151 2 416 2.7E-165 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 Pfam PF00171 Aldehyde dehydrogenase family 8 278 7.4E-16 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 Gene3D G3DSA:3.40.309.10 223 373 3.5E-152 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 415 39.396 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 322 343 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 10 405 1.1E-167 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 Gene3D G3DSA:3.40.605.10 15 408 3.5E-152 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c07980 7a8094bc5935cce9cb393cf7c74916da 416 SUPERFAMILY SSF53720 6 408 1.83E-113 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c12900 dff5c822ba6199f06b6eab45ad648008 329 Gene3D G3DSA:2.40.160.10 41 329 9.9E-17 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c12900 dff5c822ba6199f06b6eab45ad648008 329 Pfam PF13609 Gram-negative porin 8 313 2.7E-25 T 11-10-2018 VV93_v1c12900 dff5c822ba6199f06b6eab45ad648008 329 SUPERFAMILY SSF56935 44 329 3.66E-20 T 11-10-2018 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 Hamap MF_00504 Peptidase B [pepB]. 3 428 70.41 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 109 422 2.7E-102 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PIRSF PIRSF036388 1 432 9.4E-223 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 Gene3D G3DSA:3.40.630.10 91 432 1.2E-105 T 11-10-2018 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 SUPERFAMILY SSF53187 104 428 1.32E-99 T 11-10-2018 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 8.5E-46 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 8.5E-46 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 8.5E-46 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 8.5E-46 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 8.5E-46 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 VV93_v1c07080 9cf4b0f8b09830897e6dee53630557c3 432 Pfam PF12404 Peptidase 5 81 1.0E-32 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 SUPERFAMILY SSF52821 156 275 1.01E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 Gene3D G3DSA:3.40.250.10 157 276 2.4E-39 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 SUPERFAMILY SSF52821 2 135 7.73E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 Pfam PF00581 Rhodanese-like domain 6 123 5.3E-15 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 Pfam PF00581 Rhodanese-like domain 160 268 3.3E-11 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 Gene3D G3DSA:3.40.250.10 1 140 2.9E-39 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 SMART SM00450 5 128 5.6E-14 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c40360 41794796a36aa396c293e845be3ba3e5 276 SMART SM00450 152 272 6.2E-19 T 11-10-2018 IPR001763 Rhodanese-like domain VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 SUPERFAMILY SSF52540 107 516 2.53E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 Gene3D G3DSA:3.40.50.300 84 286 3.0E-38 T 11-10-2018 VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 SMART SM00490 425 507 8.2E-8 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 Gene3D G3DSA:3.40.50.300 341 521 4.0E-29 T 11-10-2018 VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 SMART SM00487 90 298 5.0E-12 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c19340 fb9c5e59e39766a3e3f124958968684e 886 Pfam PF00270 DEAD/DEAH box helicase 108 271 6.2E-13 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c10720 55ee924ce7b2227c8e0aa93d4f4c60cb 182 SUPERFAMILY SSF55469 1 181 4.58E-39 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c10720 55ee924ce7b2227c8e0aa93d4f4c60cb 182 Pfam PF00881 Nitroreductase family 8 161 1.6E-22 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VV93_v1c10720 55ee924ce7b2227c8e0aa93d4f4c60cb 182 PIRSF PIRSF000232 1 182 8.9E-62 T 11-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like VV93_v1c10720 55ee924ce7b2227c8e0aa93d4f4c60cb 182 Gene3D G3DSA:3.40.109.10 1 182 8.2E-41 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Gene3D G3DSA:2.60.40.10 588 692 6.2E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SMART SM01038 714 985 2.7E-128 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 357 382 - T 11-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SUPERFAMILY SSF49785 2 191 8.5E-58 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SUPERFAMILY SSF51445 307 585 2.21E-85 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SUPERFAMILY SSF49303 195 305 3.7E-25 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Gene3D G3DSA:3.20.20.80 306 586 1.8E-102 T 11-10-2018 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SUPERFAMILY SSF74650 701 987 3.66E-87 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Gene3D G3DSA:2.70.98.10 719 990 2.0E-82 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 SUPERFAMILY SSF49303 599 692 4.8E-19 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Pfam PF00703 Glycosyl hydrolases family 2 195 305 2.9E-18 T 11-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 422 436 - T 11-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 30 190 4.6E-46 T 11-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Gene3D G3DSA:2.60.40.10 194 305 2.1E-26 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Pfam PF02929 Beta galactosidase small chain 716 984 1.6E-70 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 PRINTS PR00132 Glycosyl hydrolase family 2 signature 493 508 4.4E-32 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 PRINTS PR00132 Glycosyl hydrolase family 2 signature 422 437 4.4E-32 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 PRINTS PR00132 Glycosyl hydrolase family 2 signature 121 136 4.4E-32 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 PRINTS PR00132 Glycosyl hydrolase family 2 signature 316 330 4.4E-32 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 PRINTS PR00132 Glycosyl hydrolase family 2 signature 347 365 4.4E-32 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 307 591 4.4E-115 T 11-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Gene3D G3DSA:2.60.120.260 1 193 1.2E-69 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c23600 039747a6f93972678c996462c5cccb49 1018 Pfam PF16353 Domain of unknown function(DUF4981) 602 686 6.0E-13 T 11-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 148 176 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 PIRSF PIRSF000112 1 358 3.2E-90 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 SUPERFAMILY SSF56796 3 353 6.28E-85 T 11-10-2018 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 Gene3D G3DSA:3.40.50.1970 4 157 3.6E-39 T 11-10-2018 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 344 1.5E-64 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 Gene3D G3DSA:1.20.1090.10 158 361 2.0E-77 T 11-10-2018 VV93_v1c35020 5868c1275501016e3235f4cdbe4de2f1 362 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 239 259 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 148 176 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 PIRSF PIRSF000112 1 358 3.2E-90 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 SUPERFAMILY SSF56796 3 353 6.28E-85 T 11-10-2018 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 Gene3D G3DSA:3.40.50.1970 4 157 3.6E-39 T 11-10-2018 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 344 1.5E-64 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 Gene3D G3DSA:1.20.1090.10 158 361 2.0E-77 T 11-10-2018 VV93_v1c01460 5868c1275501016e3235f4cdbe4de2f1 362 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 239 259 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c17530 f27ee4c4324fa5fc3131a763c8c142df 280 Hamap MF_00790 Lipase chaperone [lifO]. 1 275 17.047 T 11-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 VV93_v1c17530 f27ee4c4324fa5fc3131a763c8c142df 280 SUPERFAMILY SSF158855 34 278 7.98E-56 T 11-10-2018 VV93_v1c17530 f27ee4c4324fa5fc3131a763c8c142df 280 Pfam PF03280 Proteobacterial lipase chaperone protein 86 267 2.7E-44 T 11-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 SUPERFAMILY SSF56176 12 268 3.31E-55 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 546 557 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 SUPERFAMILY SSF46548 507 631 2.96E-23 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Gene3D G3DSA:1.10.1060.10 521 638 2.3E-9 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Pfam PF02913 FAD linked oxidases, C-terminal domain 274 520 1.8E-58 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Gene3D G3DSA:3.30.43.10 2 96 2.8E-9 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 SUPERFAMILY SSF55103 275 527 1.64E-55 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Pfam PF02754 Cysteine-rich domain 714 785 0.0068 T 11-10-2018 IPR004017 Cysteine-rich domain VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Gene3D G3DSA:3.30.70.2740 398 481 3.2E-8 T 11-10-2018 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Pfam PF01565 FAD binding domain 47 183 3.4E-29 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Pfam PF13183 4Fe-4S dicluster domain 544 616 3.0E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c41880 a885a2453376f984793b7da2d6e12a4f 945 Gene3D G3DSA:1.10.45.10 486 520 7.2E-6 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 VV93_v1c41080 938629b805155a78dd69cdb0a60cfdca 132 Pfam PF04266 ASCH domain 5 94 1.8E-6 T 11-10-2018 IPR007374 ASCH domain VV93_v1c41080 938629b805155a78dd69cdb0a60cfdca 132 Gene3D G3DSA:2.30.130.30 2 106 1.3E-6 T 11-10-2018 VV93_v1c41080 938629b805155a78dd69cdb0a60cfdca 132 SUPERFAMILY SSF88697 2 122 1.18E-24 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c41080 938629b805155a78dd69cdb0a60cfdca 132 SMART SM01022 5 99 4.3E-7 T 11-10-2018 IPR007374 ASCH domain VV93_v1c38910 2bcc06e8b1b47fec243d112e997d7f2f 192 SMART SM01012 131 186 2.0E-17 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 VV93_v1c38910 2bcc06e8b1b47fec243d112e997d7f2f 192 Pfam PF03861 ANTAR domain 135 186 7.8E-16 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 VV93_v1c38910 2bcc06e8b1b47fec243d112e997d7f2f 192 SUPERFAMILY SSF52172 4 186 1.89E-21 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38910 2bcc06e8b1b47fec243d112e997d7f2f 192 Gene3D G3DSA:1.10.10.10 133 191 1.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c02330 dc8befa1841c7201ef19b6826ed95411 289 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c02330 dc8befa1841c7201ef19b6826ed95411 289 SMART SM00382 35 244 2.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c02330 dc8befa1841c7201ef19b6826ed95411 289 Gene3D G3DSA:3.40.50.300 4 288 3.5E-91 T 11-10-2018 VV93_v1c02330 dc8befa1841c7201ef19b6826ed95411 289 SUPERFAMILY SSF52540 6 257 2.77E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02330 dc8befa1841c7201ef19b6826ed95411 289 Pfam PF00005 ABC transporter 26 186 1.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c45020 63d82815793e0e6c97a68d4eaef638f9 234 Pfam PF04286 Protein of unknown function (DUF445) 140 233 7.7E-9 T 11-10-2018 IPR007383 Protein of unknown function DUF445 VV93_v1c39620 6528544bcac708876feee0446d7e8efd 106 Gene3D G3DSA:3.30.70.1240 1 104 2.6E-28 T 11-10-2018 IPR023389 DOPA-like superfamily VV93_v1c39620 6528544bcac708876feee0446d7e8efd 106 PIRSF PIRSF028139 1 106 9.5E-43 T 11-10-2018 IPR014980 Dopa 4,5-dioxygenase VV93_v1c39620 6528544bcac708876feee0446d7e8efd 106 Pfam PF08883 Dopa 4,5-dioxygenase family 2 99 1.4E-27 T 11-10-2018 IPR014980 Dopa 4,5-dioxygenase VV93_v1c39620 6528544bcac708876feee0446d7e8efd 106 SUPERFAMILY SSF143410 1 103 9.15E-34 T 11-10-2018 IPR023389 DOPA-like superfamily VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 Gene3D G3DSA:1.10.10.10 1 54 2.7E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 Pfam PF01037 Lrp/AsnC ligand binding domain 67 121 2.0E-11 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 5.4E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 5.4E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 5.4E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 Gene3D G3DSA:3.30.70.920 55 122 4.1E-17 T 11-10-2018 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 1.7E-17 T 11-10-2018 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 SMART SM00344 1 110 5.2E-37 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 SUPERFAMILY SSF46785 1 60 2.06E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VV93_v1c30940 d1c2135d11fe6d1c363205d027360af8 122 SUPERFAMILY SSF54909 62 120 8.98E-11 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 Gene3D G3DSA:3.20.20.60 2 298 1.0E-98 T 11-10-2018 VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 SUPERFAMILY SSF51621 5 294 2.11E-96 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 258 1.5E-45 T 11-10-2018 VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 ProSitePatterns PS00161 Isocitrate lyase signature. 119 124 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 3 296 49.791 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 VV93_v1c14350 5f1c1b7b75740bb1132ecb94589aae6a 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 6 295 2.6E-127 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 VV93_v1c38470 fa8aa313a6804fc57b4100103662909f 515 Pfam PF08811 Protein of unknown function (DUF1800) 42 512 1.1E-93 T 11-10-2018 IPR014917 Protein of unknown function DUF1800 VV93_v1c08980 195b1f2b1aba9c39fd7c76d41bd84627 397 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 397 5.3E-92 T 11-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 VV93_v1c08980 195b1f2b1aba9c39fd7c76d41bd84627 397 Gene3D G3DSA:1.20.1330.10 42 241 5.5E-31 T 11-10-2018 VV93_v1c08980 195b1f2b1aba9c39fd7c76d41bd84627 397 Pfam PF00669 Bacterial flagellin N-terminal helical region 11 142 1.9E-11 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c08980 195b1f2b1aba9c39fd7c76d41bd84627 397 SUPERFAMILY SSF64518 1 397 2.62E-63 T 11-10-2018 VV93_v1c08980 195b1f2b1aba9c39fd7c76d41bd84627 397 Gene3D G3DSA:1.20.1330.10 270 372 2.9E-9 T 11-10-2018 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 SUPERFAMILY SSF46785 7 86 2.63E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 Pfam PF03466 LysR substrate binding domain 93 293 9.4E-39 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 SUPERFAMILY SSF53850 94 299 2.02E-41 T 11-10-2018 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 Gene3D G3DSA:3.40.190.290 96 295 2.1E-64 T 11-10-2018 VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 Gene3D G3DSA:1.10.10.10 6 93 2.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32410 ef3fd8b46246c284f8362af6c73ea64b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 4.8E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 SUPERFAMILY SSF46894 128 229 2.3E-24 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 Gene3D G3DSA:3.40.50.2300 2 120 1.2E-32 T 11-10-2018 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 6.6E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 Pfam PF00072 Response regulator receiver domain 8 115 3.5E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 SMART SM00448 5 115 2.9E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 SUPERFAMILY SSF52172 3 125 1.71E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 SMART SM00862 151 227 4.6E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c32370 616f6bdbce9ff799492de1f1184c4573 234 Gene3D G3DSA:1.10.10.10 121 234 6.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 Gene3D G3DSA:3.40.50.300 1 227 6.0E-65 T 11-10-2018 VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 Pfam PF00005 ABC transporter 24 172 1.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 SUPERFAMILY SSF52540 4 225 2.93E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 4 223 1.0E-105 T 11-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 SMART SM00382 33 221 1.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c20700 c41a6fba9c7778e07fd307ce0d9e9a69 227 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 1.1E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 Pfam PF13972 Bacterial transcriptional repressor 57 199 2.7E-42 T 11-10-2018 IPR025722 Bacterial transcriptional repressor TetR VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 9.5E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 9.5E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 Gene3D G3DSA:1.10.357.10 1 208 1.3E-65 T 11-10-2018 VV93_v1c28170 a68ce82ce0910ac51f43298133480ca9 211 SUPERFAMILY SSF46689 2 72 1.5E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.588 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 Pfam PF01165 Ribosomal protein S21 4 56 4.3E-23 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 2.0E-10 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 7.2E-25 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c05060 82b2ecb72009aa2f24cf802a13d14316 71 Gene3D G3DSA:1.20.5.1150 16 54 1.4E-21 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 Gene3D G3DSA:3.40.50.300 1 307 2.2E-92 T 11-10-2018 VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 SUPERFAMILY SSF52540 3 307 4.3E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 82 232 3.5E-12 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 3 307 4.3E-146 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 PIRSF PIRSF000545 1 307 3.5E-149 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VV93_v1c28840 6edc141c52217640b5a79cf530aae1b0 307 Hamap MF_00215 Pantothenate kinase [coaA]. 1 307 177.179 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 VV93_v1c26690 fbd3c834dce85e56a48a067fa3afe595 282 Gene3D G3DSA:3.40.50.300 29 183 2.8E-10 T 11-10-2018 VV93_v1c26690 fbd3c834dce85e56a48a067fa3afe595 282 SUPERFAMILY SSF52540 5 261 4.86E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26690 fbd3c834dce85e56a48a067fa3afe595 282 Pfam PF13401 AAA domain 42 168 2.3E-22 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c11050 e7b19a6c44c97a3140f27fc74a1ef45b 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 126 1.1E-22 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c11050 e7b19a6c44c97a3140f27fc74a1ef45b 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 5 136 5.2E-68 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VV93_v1c11050 e7b19a6c44c97a3140f27fc74a1ef45b 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VV93_v1c11050 e7b19a6c44c97a3140f27fc74a1ef45b 138 Gene3D G3DSA:3.10.180.10 3 135 6.4E-50 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c11050 e7b19a6c44c97a3140f27fc74a1ef45b 138 SUPERFAMILY SSF54593 3 130 6.04E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c02740 bfbe64a7711768ed2af6878b360b1116 196 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 41.159 T 11-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 VV93_v1c02740 bfbe64a7711768ed2af6878b360b1116 196 SUPERFAMILY SSF48498 81 191 1.73E-10 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c02740 bfbe64a7711768ed2af6878b360b1116 196 SUPERFAMILY SSF46689 5 78 4.03E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c02740 bfbe64a7711768ed2af6878b360b1116 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 5.0E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c02740 bfbe64a7711768ed2af6878b360b1116 196 Gene3D G3DSA:1.10.357.10 3 196 3.4E-77 T 11-10-2018 VV93_v1c02110 ab81137ac4695c0829eabab896ccc79d 255 SUPERFAMILY SSF53474 4 252 5.72E-52 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c02110 ab81137ac4695c0829eabab896ccc79d 255 Pfam PF00561 alpha/beta hydrolase fold 16 242 1.4E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c02110 ab81137ac4695c0829eabab896ccc79d 255 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 5 254 47.349 T 11-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VV93_v1c02110 ab81137ac4695c0829eabab896ccc79d 255 Gene3D G3DSA:3.40.50.1820 1 253 2.9E-70 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c02110 ab81137ac4695c0829eabab896ccc79d 255 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 11 252 2.0E-109 T 11-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 35.094 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 Pfam PF01168 Alanine racemase, N-terminal domain 24 230 2.5E-31 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 Gene3D G3DSA:3.20.20.10 1 236 1.7E-86 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 PIRSF PIRSF004848 1 236 6.8E-77 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 SUPERFAMILY SSF51419 1 228 1.96E-81 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c25800 55d996f6c1e9a61c06469f4b3a7db552 236 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 1.0E-87 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 VV93_v1c12780 b59f83d641b4431a597f20dd3204d375 276 Pfam PF13460 NAD(P)H-binding 9 183 2.4E-12 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c12780 b59f83d641b4431a597f20dd3204d375 276 Gene3D G3DSA:3.40.50.720 1 276 2.9E-44 T 11-10-2018 VV93_v1c12780 b59f83d641b4431a597f20dd3204d375 276 SUPERFAMILY SSF51735 1 247 1.1E-23 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 Gene3D G3DSA:3.30.70.360 176 287 1.1E-113 T 11-10-2018 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 SUPERFAMILY SSF53187 7 367 1.86E-59 T 11-10-2018 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 8 365 7.6E-159 T 11-10-2018 IPR010162 Peptidase M20B, peptidase T-like VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 Pfam PF01546 Peptidase family M20/M25/M40 72 367 1.7E-20 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 Gene3D G3DSA:3.40.630.10 16 362 1.1E-113 T 11-10-2018 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 PIRSF PIRSF001123 6 105 2.1 T 11-10-2018 IPR008007 Peptidase M42 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 PIRSF PIRSF001123 98 181 5.7E-4 T 11-10-2018 IPR008007 Peptidase M42 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 PIRSF PIRSF001123 293 368 0.001 T 11-10-2018 IPR008007 Peptidase M42 VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 Pfam PF07687 Peptidase dimerisation domain 182 273 6.9E-15 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c14030 550d52ee541686b2e5137e070bdb433f 368 SUPERFAMILY SSF55031 177 289 4.45E-22 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 Gene3D G3DSA:3.30.70.2270 153 203 1.1E-85 T 11-10-2018 VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 Pfam PF00652 Ricin-type beta-trefoil lectin domain 339 429 1.6E-12 T 11-10-2018 IPR000772 Ricin B, lectin domain VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 SUPERFAMILY SSF56959 127 331 1.18E-7 T 11-10-2018 IPR036435 Leukocidin/porin MspA superfamily VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 SUPERFAMILY SSF50370 334 462 3.93E-18 T 11-10-2018 IPR035992 Ricin B-like lectins VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 Gene3D G3DSA:2.70.240.10 36 333 1.1E-85 T 11-10-2018 VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 SMART SM00458 338 465 2.4E-30 T 11-10-2018 IPR000772 Ricin B, lectin domain VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 Gene3D G3DSA:2.80.10.50 335 471 6.9E-44 T 11-10-2018 VV93_v1c39010 3ec1aab58f5fced0d3012b3013434c62 471 Pfam PF07968 Leukocidin/Hemolysin toxin family 71 331 7.1E-66 T 11-10-2018 IPR016183 Leukocidin/Hemolysin toxin GO:0005576|GO:0051715 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF52172 981 1096 8.4E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF00672 HAMP domain 353 389 8.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00387 783 906 6.5E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 783 904 1.8E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:3.30.450.40 399 546 1.2E-13 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00304 340 392 6.4E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00448 1105 1219 4.2E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00448 1251 1365 6.0E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00448 983 1093 6.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF52172 1106 1222 1.57E-21 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:1.10.287.130 632 734 3.7E-23 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF158472 341 389 2.48E-9 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:3.40.50.12740 983 1100 1.2E-28 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:3.40.50.12740 1250 1370 1.1E-40 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF02743 Cache domain 41 302 4.4E-14 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF13185 GAF domain 409 540 7.3E-12 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SMART SM00388 668 736 1.9E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF00072 Response regulator receiver domain 1108 1215 8.1E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF00072 Response regulator receiver domain 986 1092 6.7E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF00072 Response regulator receiver domain 1253 1365 3.9E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF55781 380 541 5.49E-18 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF52172 1249 1369 4.41E-38 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:3.40.50.2300 1101 1236 5.3E-23 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:1.20.1480.50 300 395 1.1E-12 T 11-10-2018 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF47384 655 737 6.08E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Gene3D G3DSA:3.30.565.10 735 910 7.2E-50 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 SUPERFAMILY SSF55874 725 904 5.76E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 Pfam PF00512 His Kinase A (phospho-acceptor) domain 669 736 1.9E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 849 859 3.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 845 3.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 890 903 3.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c38740 458fd63bdf4eef6919dab9cb17036e63 1370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 866 884 3.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.150.10.10 2577 2734 3.3E-21 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2599 2617 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.150.10.10 1966 2109 1.1E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 783 882 8.7E-24 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 1104 1220 1.1E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 1001 1100 4.6E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 892 991 4.6E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 577 675 4.7E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 681 780 1.6E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 PRINTS PR00313 NodO calcium binding signature 2612 2620 9.4E-7 T 11-10-2018 VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 PRINTS PR00313 NodO calcium binding signature 2591 2602 9.4E-7 T 11-10-2018 VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 PRINTS PR00313 NodO calcium binding signature 2603 2611 9.4E-7 T 11-10-2018 VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 PRINTS PR00313 NodO calcium binding signature 2630 2639 9.4E-7 T 11-10-2018 VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 153 240 1.7E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 241 324 6.0E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 493 576 3.4E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 325 408 5.3E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 Gene3D G3DSA:2.60.40.10 409 492 1.2E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 SUPERFAMILY SSF53300 2251 2431 4.94E-10 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 SUPERFAMILY SSF51120 2568 2718 8.76E-26 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2608 2626 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 2647 2737 7.1E-7 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VV93_v1c14520 48ae2febe3960c8a1bed2ab0faee9594 2740 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2617 2635 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Gene3D G3DSA:3.40.50.11260 405 494 3.0E-35 T 11-10-2018 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 195 213 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 31 53 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 98 115 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 10 30 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 125 147 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 177 194 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PRINTS PR00775 90kDa heat shock protein signature 80 97 2.3E-62 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 PIRSF PIRSF002583 1 634 2.7E-214 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 SUPERFAMILY SSF110942 520 632 1.09E-33 T 11-10-2018 IPR037196 HSP90, C-terminal domain VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 30 39 - T 11-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 187 4.0E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Pfam PF00183 Hsp90 protein 226 633 2.7E-128 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Gene3D G3DSA:3.30.230.80 237 404 8.2E-70 T 11-10-2018 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 SUPERFAMILY SSF55874 10 217 4.06E-64 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Gene3D G3DSA:3.30.565.10 6 220 2.2E-75 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 SUPERFAMILY SSF54211 238 493 5.08E-100 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Gene3D G3DSA:1.20.120.790 500 632 1.0E-41 T 11-10-2018 IPR037196 HSP90, C-terminal domain VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 7 632 32.24 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 VV93_v1c09250 c46ed1f23cddee5ac218c3c3129ee3dc 634 SMART SM00387 32 189 2.9E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 SUPERFAMILY SSF50156 89 185 2.63E-9 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 SUPERFAMILY SSF50156 196 291 7.76E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 Pfam PF02163 Peptidase family M50 11 440 1.7E-85 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 452 4.6E-139 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 Gene3D G3DSA:2.30.42.10 126 221 1.0E-31 T 11-10-2018 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 Gene3D G3DSA:2.30.42.10 226 313 5.9E-18 T 11-10-2018 VV93_v1c22690 35a6af2be844f3255fd9d20398de6d33 452 SMART SM00228 212 281 1.5E-4 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 SMART SM00342 1045 1127 8.5E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 SUPERFAMILY SSF101898 210 434 3.92E-9 T 11-10-2018 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 Gene3D G3DSA:2.130.10.10 365 458 1.8E-8 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 Gene3D G3DSA:2.130.10.10 98 360 2.8E-21 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 SUPERFAMILY SSF46689 1081 1128 1.21E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 1082 1123 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 SUPERFAMILY SSF63829 379 559 2.62E-14 T 11-10-2018 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 Gene3D G3DSA:1.10.10.60 1029 1128 6.5E-23 T 11-10-2018 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 Gene3D G3DSA:2.130.10.10 459 619 3.1E-11 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c09620 b8f1071d589ced5903ab846fd1778c49 1134 Pfam PF12833 Helix-turn-helix domain 1052 1127 6.7E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c34510 596d9d34bb5f30b48b5570fb2b13cff6 300 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 88 271 5.7E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34510 596d9d34bb5f30b48b5570fb2b13cff6 300 SMART SM00283 53 300 6.2E-21 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34510 596d9d34bb5f30b48b5570fb2b13cff6 300 Gene3D G3DSA:1.10.287.950 23 300 4.5E-45 T 11-10-2018 VV93_v1c34510 596d9d34bb5f30b48b5570fb2b13cff6 300 SUPERFAMILY SSF58104 43 296 5.62E-46 T 11-10-2018 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 Gene3D G3DSA:3.40.50.2000 271 482 1.0E-151 T 11-10-2018 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 22 497 3.6E-162 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 Hamap MF_00484 Glycogen synthase [glgA]. 21 498 38.835 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 Pfam PF00534 Glycosyl transferases group 1 314 462 1.3E-13 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 Pfam PF08323 Starch synthase catalytic domain 23 254 3.1E-65 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 Gene3D G3DSA:3.40.50.2000 23 496 1.0E-151 T 11-10-2018 VV93_v1c20220 4f090b430e8bc02413dd36c78e4c0d09 500 SUPERFAMILY SSF53756 18 500 4.71E-108 T 11-10-2018 VV93_v1c01940 654adec41240ab0bc6e479261b5684f0 128 PIRSF PIRSF016821 5 128 1.5E-43 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 VV93_v1c01940 654adec41240ab0bc6e479261b5684f0 128 Pfam PF01479 S4 domain 8 53 1.7E-14 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c01940 654adec41240ab0bc6e479261b5684f0 128 Gene3D G3DSA:3.10.290.10 2 107 1.0E-38 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c01940 654adec41240ab0bc6e479261b5684f0 128 SUPERFAMILY SSF55174 8 105 2.22E-32 T 11-10-2018 VV93_v1c01940 654adec41240ab0bc6e479261b5684f0 128 SMART SM00363 8 71 1.4E-12 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c25760 4eab0581aaebeda26ba67fc75b57a53b 187 Gene3D G3DSA:3.40.1740.10 1 187 5.3E-70 T 11-10-2018 VV93_v1c25760 4eab0581aaebeda26ba67fc75b57a53b 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 5.5E-52 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 VV93_v1c25760 4eab0581aaebeda26ba67fc75b57a53b 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.241 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 VV93_v1c25760 4eab0581aaebeda26ba67fc75b57a53b 187 SUPERFAMILY SSF143456 1 187 3.01E-67 T 11-10-2018 VV93_v1c39910 b499c2e3c01e00bfe9a4a133d367290c 305 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 240 249 - T 11-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 VV93_v1c39910 b499c2e3c01e00bfe9a4a133d367290c 305 SUPERFAMILY SSF51569 8 297 1.12E-69 T 11-10-2018 VV93_v1c39910 b499c2e3c01e00bfe9a4a133d367290c 305 Gene3D G3DSA:3.20.20.70 7 304 3.4E-125 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c39910 b499c2e3c01e00bfe9a4a133d367290c 305 Pfam PF00682 HMGL-like 15 283 1.5E-50 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 VV93_v1c13240 5d34333a5cfc77452a4ede737ee38978 381 Gene3D G3DSA:3.40.190.10 69 329 3.8E-17 T 11-10-2018 VV93_v1c13240 5d34333a5cfc77452a4ede737ee38978 381 SUPERFAMILY SSF53850 33 379 1.09E-39 T 11-10-2018 VV93_v1c13240 5d34333a5cfc77452a4ede737ee38978 381 PIRSF PIRSF029172 1 381 2.7E-170 T 11-10-2018 IPR027020 Protein ynjB VV93_v1c13240 5d34333a5cfc77452a4ede737ee38978 381 Gene3D G3DSA:3.40.190.10 153 297 3.8E-17 T 11-10-2018 VV93_v1c13240 5d34333a5cfc77452a4ede737ee38978 381 Pfam PF13416 Bacterial extracellular solute-binding protein 59 331 1.3E-23 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 Gene3D G3DSA:1.10.287.950 228 520 1.3E-54 T 11-10-2018 VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 SUPERFAMILY SSF55785 20 114 2.97E-24 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 SMART SM00283 257 518 2.8E-47 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 Gene3D G3DSA:3.30.450.20 4 121 1.6E-22 T 11-10-2018 VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 Pfam PF08447 PAS fold 31 114 5.0E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 334 482 5.1E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 110 4.7E-11 T 11-10-2018 IPR000014 PAS domain VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 SMART SM00091 8 75 0.0094 T 11-10-2018 IPR000014 PAS domain VV93_v1c40440 af3774ca821c717d8d1c15ae6920082a 520 SUPERFAMILY SSF58104 238 518 1.83E-59 T 11-10-2018 VV93_v1c05360 b6f736e2b46edfae7540d6397f46b3a5 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 VV93_v1c05360 b6f736e2b46edfae7540d6397f46b3a5 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.3E-45 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 VV93_v1c05360 b6f736e2b46edfae7540d6397f46b3a5 130 SUPERFAMILY SSF54211 5 130 7.97E-48 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c05360 b6f736e2b46edfae7540d6397f46b3a5 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.501 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid VV93_v1c05360 b6f736e2b46edfae7540d6397f46b3a5 130 Gene3D G3DSA:3.30.230.10 1 130 6.7E-53 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c24320 0732f18b9450034e563fe892628b5ae4 209 PIRSF PIRSF005461 1 209 1.1E-80 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VV93_v1c24320 0732f18b9450034e563fe892628b5ae4 209 Gene3D G3DSA:3.40.50.150 30 209 2.7E-60 T 11-10-2018 VV93_v1c24320 0732f18b9450034e563fe892628b5ae4 209 SUPERFAMILY SSF53335 30 209 1.1E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c24320 0732f18b9450034e563fe892628b5ae4 209 Pfam PF01728 FtsJ-like methyltransferase 31 207 5.8E-57 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 VV93_v1c24320 0732f18b9450034e563fe892628b5ae4 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 28.651 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 3 124 4.3E-23 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 SUPERFAMILY SSF48179 205 382 2.58E-44 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 Gene3D G3DSA:3.40.50.720 2 206 3.8E-77 T 11-10-2018 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 SUPERFAMILY SSF51735 3 202 6.3E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 Gene3D G3DSA:1.10.1040.10 208 382 6.2E-64 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 2 379 40.489 T 11-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 151 374 2.8E-58 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 151 163 - T 11-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 PRINTS PR00084 Mannitol dehydrogenase signature 115 128 7.7E-18 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 PRINTS PR00084 Mannitol dehydrogenase signature 151 164 7.7E-18 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 PRINTS PR00084 Mannitol dehydrogenase signature 4 14 7.7E-18 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c04720 f5ecc3e7dc0d4a7c38a13b8d55dacef2 382 PRINTS PR00084 Mannitol dehydrogenase signature 171 186 7.7E-18 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Gene3D G3DSA:2.70.98.10 310 560 8.9E-72 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Gene3D G3DSA:1.50.10.100 17 308 1.2E-64 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Gene3D G3DSA:2.60.220.10 561 663 5.4E-19 T 11-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 569 634 6.2E-12 T 11-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 10 293 2.1E-29 T 11-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 SUPERFAMILY SSF48230 6 335 1.11E-75 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 SUPERFAMILY SSF49863 567 665 2.35E-17 T 11-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 SUPERFAMILY SSF74650 310 564 2.46E-78 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c45010 091b6b0816511e813af5ea8635355a8a 839 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 313 552 9.1E-66 T 11-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 210 271 2.3E-21 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 23 450 5.0E-162 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 14 455 37.547 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 SUPERFAMILY SSF81301 25 180 1.01E-41 T 11-10-2018 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Gene3D G3DSA:1.10.3090.10 181 431 7.2E-93 T 11-10-2018 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 SUPERFAMILY SSF81891 181 393 3.92E-49 T 11-10-2018 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Pfam PF01743 Poly A polymerase head domain 54 183 6.0E-39 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Pfam PF12626 Polymerase A arginine-rich C-terminus 329 444 2.4E-37 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain VV93_v1c24730 c9a13931a70b7b01d8b46581d2b0edbf 455 Gene3D G3DSA:3.30.460.10 20 179 2.5E-63 T 11-10-2018 VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 80 1.2E-19 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 Gene3D G3DSA:3.40.50.10490 91 278 6.7E-48 T 11-10-2018 VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 SUPERFAMILY SSF53697 100 268 4.71E-31 T 11-10-2018 VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 Pfam PF01380 SIS domain 129 251 3.3E-15 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 Gene3D G3DSA:1.10.10.10 1 81 1.9E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41250 61fcd2889cce0f38b41f76d882fce75d 278 SUPERFAMILY SSF46689 5 80 8.96E-22 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c35670 cf5c072056a4a136694f23037c792681 481 Pfam PF05762 VWA domain containing CoxE-like protein 316 448 4.8E-10 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like VV93_v1c35670 cf5c072056a4a136694f23037c792681 481 Gene3D G3DSA:3.40.50.410 322 465 2.6E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c35670 cf5c072056a4a136694f23037c792681 481 SMART SM00327 320 479 5.1E-5 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c35670 cf5c072056a4a136694f23037c792681 481 SUPERFAMILY SSF53300 317 471 1.44E-25 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 533 892 2.8E-63 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Gene3D G3DSA:3.40.640.10 88 356 2.6E-132 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 SUPERFAMILY SSF53383 507 957 3.94E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Gene3D G3DSA:3.40.640.10 576 844 2.9E-138 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 35 467 3.8E-158 T 11-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Gene3D G3DSA:1.20.1650.10 464 561 1.2E-40 T 11-10-2018 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 SUPERFAMILY SSF53383 43 465 2.04E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Gene3D G3DSA:3.90.1150.10 39 463 2.6E-132 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Pfam PF00202 Aminotransferase class-III 52 465 4.2E-94 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c11560 f6c030b04d782d07899e53fbd83f1c0b 959 Gene3D G3DSA:3.90.1150.10 562 948 2.9E-138 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 Pfam PF01047 MarR family 46 102 5.5E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 Gene3D G3DSA:1.10.10.10 11 152 1.4E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 1.2E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 1.2E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 1.2E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 SMART SM00347 39 137 8.4E-27 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40630 c6c05e96ebe015d8a51cb8e24cdc6050 152 SUPERFAMILY SSF46785 16 151 8.38E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c13860 800aab1dc7e626c804c24339c165a117 186 PIRSF PIRSF006135 6 183 2.2E-54 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 VV93_v1c13860 800aab1dc7e626c804c24339c165a117 186 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 9 178 1.9E-61 T 11-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 VV93_v1c13860 800aab1dc7e626c804c24339c165a117 186 Gene3D G3DSA:3.40.50.300 8 181 6.5E-58 T 11-10-2018 VV93_v1c13860 800aab1dc7e626c804c24339c165a117 186 SUPERFAMILY SSF52540 9 181 1.43E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 5 358 7.1E-163 T 11-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 Gene3D G3DSA:2.40.50.140 286 349 2.1E-16 T 11-10-2018 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 SUPERFAMILY SSF52540 8 247 8.65E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 Pfam PF08402 TOBE domain 279 355 2.4E-5 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 Gene3D G3DSA:2.40.50.940 226 355 2.1E-16 T 11-10-2018 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 SMART SM00382 32 215 2.1E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 SUPERFAMILY SSF50331 240 357 3.4E-12 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 Gene3D G3DSA:3.40.50.300 7 225 3.4E-69 T 11-10-2018 VV93_v1c34590 6ff73c2fd8b4e8b1fd7317566b75df44 368 Pfam PF00005 ABC transporter 23 165 2.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 SUPERFAMILY SSF53335 78 393 7.88E-70 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 SUPERFAMILY SSF88697 4 73 2.13E-17 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 168 376 9.4E-31 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 Gene3D G3DSA:3.30.750.80 73 180 2.2E-36 T 11-10-2018 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 Gene3D G3DSA:2.30.130.10 1 72 2.4E-28 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 397 68.544 T 11-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 Gene3D G3DSA:3.40.50.150 181 396 2.6E-69 T 11-10-2018 VV93_v1c14530 7fb377cacd2313856ac33bea1cb91e07 397 SMART SM00359 3 87 3.2E-14 T 11-10-2018 IPR002478 PUA domain GO:0003723 VV93_v1c27740 df90b6c1f544fc6e812d16069bbd8cff 159 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 13 119 2.0E-42 T 11-10-2018 IPR012659 Conserved hypothetical protein CHP02444 VV93_v1c27740 df90b6c1f544fc6e812d16069bbd8cff 159 Pfam PF09523 Protein of unknown function (DUF2390) 15 115 2.0E-28 T 11-10-2018 IPR012659 Conserved hypothetical protein CHP02444 VV93_v1c32160 7e57d42ea7e162a2a13312268e6729dd 281 Pfam PF00753 Metallo-beta-lactamase superfamily 34 216 4.8E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c32160 7e57d42ea7e162a2a13312268e6729dd 281 SUPERFAMILY SSF56281 22 237 3.48E-33 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c32160 7e57d42ea7e162a2a13312268e6729dd 281 Gene3D G3DSA:3.60.15.10 20 250 5.4E-22 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c32160 7e57d42ea7e162a2a13312268e6729dd 281 SMART SM00849 35 216 2.3E-14 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Gene3D G3DSA:3.40.50.1970 451 642 2.4E-58 T 11-10-2018 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Pfam PF00465 Iron-containing alcohol dehydrogenase 458 850 5.1E-113 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 PIRSF PIRSF000111 1 865 0.0 T 11-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 719 739 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 SUPERFAMILY SSF56796 452 863 1.07E-114 T 11-10-2018 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Pfam PF00171 Aldehyde dehydrogenase family 5 312 8.7E-24 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 631 659 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Gene3D G3DSA:3.40.309.10 218 405 6.7E-180 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 SUPERFAMILY SSF53720 6 454 1.01E-83 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Gene3D G3DSA:3.40.605.10 12 446 6.7E-180 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c10950 87f719ca7edd4a407c832fa01ac456f0 891 Gene3D G3DSA:1.20.1090.10 643 864 6.9E-60 T 11-10-2018 VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 Pfam PF12801 4Fe-4S binding domain 174 211 1.9E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 Pfam PF12801 4Fe-4S binding domain 82 127 1.3E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 Pfam PF13187 4Fe-4S dicluster domain 224 270 9.6E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 SUPERFAMILY SSF54862 93 278 6.91E-21 T 11-10-2018 VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 Gene3D G3DSA:3.30.70.3270 205 286 1.5E-7 T 11-10-2018 VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 25 275 3.2E-116 T 11-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family VV93_v1c14650 4cfd19ebb12480d940f6deb8220fa2ce 286 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 257 268 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 Pfam PF00230 Major intrinsic protein 5 251 2.7E-63 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 TIGRFAM TIGR00861 MIP: MIP family channel proteins 14 251 1.1E-68 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 Gene3D G3DSA:1.20.1080.10 2 259 7.6E-98 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 86 105 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 49 73 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 234 254 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 185 207 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 10 29 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 PRINTS PR00783 Major intrinsic protein family signature 152 170 6.0E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 ProSitePatterns PS00221 MIP family signature. 67 75 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 VV93_v1c23370 1955e8d086b63ee0d096c3f92892f78c 283 SUPERFAMILY SSF81338 8 253 2.09E-74 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Pfam PF08351 Domain of unknown function (DUF1726) 69 116 5.5E-6 T 11-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 SUPERFAMILY SSF55729 374 547 1.04E-12 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 19 675 43.621 T 11-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Gene3D G3DSA:3.40.50.12320 179 338 1.3E-46 T 11-10-2018 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Gene3D G3DSA:3.40.630.30 341 545 8.9E-69 T 11-10-2018 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 SUPERFAMILY SSF52540 155 287 4.37E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Pfam PF13718 GNAT acetyltransferase 2 383 497 3.1E-18 T 11-10-2018 IPR000182 GNAT domain VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Gene3D G3DSA:3.40.50.11040 3 178 5.2E-20 T 11-10-2018 VV93_v1c45520 97a39bcf3ece1e926ea459f69d07e060 675 Pfam PF05127 Helicase 181 348 8.8E-57 T 11-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 VV93_v1c30900 ba40a2ddb2cd8a01e214d9697810c0cb 726 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 127 717 7.3E-193 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VV93_v1c30900 ba40a2ddb2cd8a01e214d9697810c0cb 726 SUPERFAMILY SSF51445 165 718 8.95E-150 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c30900 ba40a2ddb2cd8a01e214d9697810c0cb 726 Pfam PF02446 4-alpha-glucanotransferase 177 699 9.6E-127 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 Gene3D G3DSA:3.40.630.30 4 219 9.2E-47 T 11-10-2018 VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 SUPERFAMILY SSF56317 221 491 3.01E-60 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 Gene3D G3DSA:3.60.110.10 222 507 6.6E-60 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 SUPERFAMILY SSF55729 5 139 4.71E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 Pfam PF00795 Carbon-nitrogen hydrolase 226 485 5.3E-34 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VV93_v1c43140 16027d76e077ab8247045ac7e89187d2 510 Pfam PF00583 Acetyltransferase (GNAT) family 48 136 3.0E-6 T 11-10-2018 IPR000182 GNAT domain VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 6.6E-22 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 SUPERFAMILY SSF55658 1 57 1.52E-19 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 Gene3D G3DSA:3.40.5.10 1 50 5.0E-24 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 26.707 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 3.2E-25 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 Gene3D G3DSA:3.10.430.100 61 149 5.2E-31 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 1.8E-55 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27100 938c23feb2234aa067d34f57176a6ecc 149 SUPERFAMILY SSF55653 60 149 7.06E-26 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 18 408 3.8E-148 T 11-10-2018 VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 Pfam PF04055 Radical SAM superfamily 24 196 3.4E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 252 326 3.0E-6 T 11-10-2018 VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 302 391 5.2E-18 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 SUPERFAMILY SSF102114 24 372 1.44E-37 T 11-10-2018 VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 Pfam PF13186 Iron-sulfur cluster-binding domain 303 363 1.9E-8 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain VV93_v1c36730 20479bc3f257b2d9404c1de62587132b 440 Gene3D G3DSA:3.20.20.70 15 411 2.2E-111 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c04760 a16b41d00c4a7a2c3527e18a7ade84df 238 Gene3D G3DSA:3.30.70.2970 53 168 7.1E-8 T 11-10-2018 VV93_v1c04760 a16b41d00c4a7a2c3527e18a7ade84df 238 Gene3D G3DSA:3.30.110.170 43 210 7.1E-8 T 11-10-2018 VV93_v1c04760 a16b41d00c4a7a2c3527e18a7ade84df 238 Pfam PF04402 Protein of unknown function (DUF541) 41 211 6.0E-16 T 11-10-2018 IPR007497 Protein of unknown function DUF541 VV93_v1c04760 a16b41d00c4a7a2c3527e18a7ade84df 238 PIRSF PIRSF029033 1 238 2.0E-101 T 11-10-2018 IPR016907 Uncharacterised conserved protein UCP029033, periplasmic protein VV93_v1c10310 d5feb0384d4567592ff2ef7b8ec25735 186 Pfam PF01694 Rhomboid family 34 172 3.2E-14 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 VV93_v1c10310 d5feb0384d4567592ff2ef7b8ec25735 186 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 24 171 3.0E-50 T 11-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria VV93_v1c10310 d5feb0384d4567592ff2ef7b8ec25735 186 Gene3D G3DSA:1.20.1540.10 1 175 2.0E-21 T 11-10-2018 IPR035952 Rhomboid-like superfamily VV93_v1c10310 d5feb0384d4567592ff2ef7b8ec25735 186 SUPERFAMILY SSF144091 3 172 1.02E-28 T 11-10-2018 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 SUPERFAMILY SSF56655 6 272 9.29E-78 T 11-10-2018 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 Pfam PF00459 Inositol monophosphatase family 8 252 4.0E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 10 262 39.235 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 10 260 3.8E-105 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 Gene3D G3DSA:3.30.540.10 6 160 9.1E-46 T 11-10-2018 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 Gene3D G3DSA:3.40.190.80 161 264 8.3E-26 T 11-10-2018 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 65 81 6.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 6.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 43 63 6.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 217 241 6.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c02070 e3faf5b2b2a5a1522a0695eb340e1edd 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 185 206 6.0E-14 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c14540 923435c38d14f84f4214b26df26079c9 467 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 251 431 3.6E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14540 923435c38d14f84f4214b26df26079c9 467 Gene3D G3DSA:1.10.287.950 139 466 9.3E-63 T 11-10-2018 VV93_v1c14540 923435c38d14f84f4214b26df26079c9 467 SMART SM00283 205 466 4.6E-58 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14540 923435c38d14f84f4214b26df26079c9 467 SUPERFAMILY SSF58104 157 466 1.7E-65 T 11-10-2018 VV93_v1c43160 f15a5370cb2dfe20622eb85a6c7a523e 739 SUPERFAMILY SSF50969 107 449 2.75E-16 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like VV93_v1c43160 f15a5370cb2dfe20622eb85a6c7a523e 739 Gene3D G3DSA:2.130.10.10 13 384 9.4E-8 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c43160 f15a5370cb2dfe20622eb85a6c7a523e 739 Pfam PF13449 Esterase-like activity of phytase 460 720 6.8E-46 T 11-10-2018 IPR027372 Phytase-like domain VV93_v1c00780 036254f8bc61c0c945159a9e1c565c52 233 Pfam PF04340 Protein of unknown function, DUF484 6 216 2.0E-70 T 11-10-2018 IPR007435 Protein of unknown function DUF484 VV93_v1c00780 036254f8bc61c0c945159a9e1c565c52 233 Gene3D G3DSA:3.30.450.40 43 221 2.0E-36 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 100 111 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 Gene3D G3DSA:3.20.20.70 2 358 4.1E-145 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 354 5.0E-89 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 PIRSF PIRSF001359 13 358 1.2E-94 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 357 2.4E-174 T 11-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 171 182 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 356 2.3E-110 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c25640 c15815bc77dc1913d9578fbf02019df9 358 SUPERFAMILY SSF51569 4 356 6.45E-129 T 11-10-2018 VV93_v1c18380 5a9162e3130bbb95fe7ce59328b0f3d7 191 Pfam PF13302 Acetyltransferase (GNAT) domain 15 158 1.1E-21 T 11-10-2018 IPR000182 GNAT domain VV93_v1c18380 5a9162e3130bbb95fe7ce59328b0f3d7 191 Gene3D G3DSA:3.40.630.30 11 188 1.7E-47 T 11-10-2018 VV93_v1c18380 5a9162e3130bbb95fe7ce59328b0f3d7 191 SUPERFAMILY SSF55729 8 183 1.36E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 SUPERFAMILY SSF52283 4 139 2.08E-32 T 11-10-2018 VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 Gene3D G3DSA:3.40.50.720 26 317 1.7E-111 T 11-10-2018 VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 SUPERFAMILY SSF51735 103 290 3.26E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 289 1.9E-56 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 Gene3D G3DSA:3.40.50.720 99 288 1.7E-111 T 11-10-2018 VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 196 218 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 320 8.4E-25 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VV93_v1c26460 e2150c7486900c8ecb259a1f274dca17 320 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c05090 93b237097530b7d7265e97b7959c0d84 203 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 3 194 2.7E-72 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VV93_v1c05090 93b237097530b7d7265e97b7959c0d84 203 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 4.9E-49 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VV93_v1c05090 93b237097530b7d7265e97b7959c0d84 203 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.708 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VV93_v1c05090 93b237097530b7d7265e97b7959c0d84 203 SMART SM01207 10 185 9.1E-82 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 VV93_v1c13520 99f4080d232a60908e04b5a498f4561d 415 SUPERFAMILY SSF56796 1 380 5.5E-89 T 11-10-2018 VV93_v1c13520 99f4080d232a60908e04b5a498f4561d 415 Gene3D G3DSA:1.20.1090.10 187 383 5.8E-41 T 11-10-2018 VV93_v1c13520 99f4080d232a60908e04b5a498f4561d 415 Gene3D G3DSA:3.40.50.1970 1 180 1.1E-47 T 11-10-2018 VV93_v1c13520 99f4080d232a60908e04b5a498f4561d 415 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 372 1.2E-91 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c25550 6452d2fc85683c9038dec568c555c376 191 SUPERFAMILY SSF101327 6 178 2.22E-47 T 11-10-2018 IPR036255 YgfB-like superfamily VV93_v1c25550 6452d2fc85683c9038dec568c555c376 191 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 179 4.1E-36 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c25550 6452d2fc85683c9038dec568c555c376 191 Gene3D G3DSA:1.20.120.740 3 191 8.1E-50 T 11-10-2018 VV93_v1c25550 6452d2fc85683c9038dec568c555c376 191 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 23 169 1.7E-10 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c25550 6452d2fc85683c9038dec568c555c376 191 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 5 189 35.88 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c31220 99b6fd520e646647637825d466994a7f 153 Pfam PF00174 Oxidoreductase molybdopterin binding domain 39 126 7.2E-5 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 VV93_v1c31220 99b6fd520e646647637825d466994a7f 153 SUPERFAMILY SSF56524 18 151 6.54E-15 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VV93_v1c41180 27a873f1fb90c6961309e1790aa67b6e 101 Hamap MF_02200 Chaperone NapD [napD]. 6 82 19.446 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VV93_v1c41180 27a873f1fb90c6961309e1790aa67b6e 101 Pfam PF03927 NapD protein 6 80 9.7E-29 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly VV93_v1c41180 27a873f1fb90c6961309e1790aa67b6e 101 Gene3D G3DSA:3.30.70.920 6 75 1.1E-22 T 11-10-2018 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 PIRSF PIRSF005572 2 384 1.7E-138 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 Gene3D G3DSA:3.90.1150.10 5 375 5.3E-168 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.2E-229 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 Gene3D G3DSA:3.40.640.10 16 262 5.3E-168 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 54.471 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 Pfam PF00266 Aminotransferase class-V 5 368 1.5E-89 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c07010 dcdfd6e09a2168cf83324cc3b4ce2703 404 SUPERFAMILY SSF53383 5 391 1.02E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c20780 e79727058d01229bbbfd34622b6c0813 291 Pfam PF01636 Phosphotransferase enzyme family 30 216 5.3E-11 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase VV93_v1c20780 e79727058d01229bbbfd34622b6c0813 291 SUPERFAMILY SSF56112 26 269 4.81E-34 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c20780 e79727058d01229bbbfd34622b6c0813 291 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 30 283 2.4E-106 T 11-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 VV93_v1c20780 e79727058d01229bbbfd34622b6c0813 291 Gene3D G3DSA:3.90.1200.10 106 287 2.8E-13 T 11-10-2018 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 305 331 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 103 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 61 82 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 161 175 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 136 152 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 260 279 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 61 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 105 118 2.9E-63 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 SUPERFAMILY SSF53850 40 357 6.09E-91 T 11-10-2018 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 PIRSF PIRSF019574 5 360 8.6E-113 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 Pfam PF13416 Bacterial extracellular solute-binding protein 56 326 2.7E-39 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 Gene3D G3DSA:3.40.190.10 146 354 1.0E-109 T 11-10-2018 VV93_v1c32680 3fe7576f10ebee724394a2af48433331 360 Gene3D G3DSA:3.40.190.10 43 324 1.0E-109 T 11-10-2018 VV93_v1c10170 0259835cb1a4332a79cc36fcf5f62e9a 332 PIRSF PIRSF006470 1 332 2.7E-121 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c10170 0259835cb1a4332a79cc36fcf5f62e9a 332 Gene3D G3DSA:3.40.190.170 27 328 1.4E-91 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VV93_v1c10170 0259835cb1a4332a79cc36fcf5f62e9a 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 277 1.1E-78 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c10170 0259835cb1a4332a79cc36fcf5f62e9a 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 317 2.1E-104 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VV93_v1c12430 fc8a0e508311f90f55769df6a3b07fb3 269 Gene3D G3DSA:3.40.50.150 8 258 4.5E-42 T 11-10-2018 VV93_v1c12430 fc8a0e508311f90f55769df6a3b07fb3 269 SUPERFAMILY SSF53335 21 200 3.04E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c12430 fc8a0e508311f90f55769df6a3b07fb3 269 Pfam PF08241 Methyltransferase domain 59 152 2.5E-27 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 VV93_v1c12430 fc8a0e508311f90f55769df6a3b07fb3 269 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 15 269 32.686 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VV93_v1c12430 fc8a0e508311f90f55769df6a3b07fb3 269 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 23 268 2.7E-68 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 SUPERFAMILY SSF51971 145 399 8.83E-70 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 SUPERFAMILY SSF46548 6 157 1.46E-40 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 1.1E-36 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 PRINTS PR00419 Adrenodoxin reductase family signature 288 302 1.1E-36 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 PRINTS PR00419 Adrenodoxin reductase family signature 322 335 1.1E-36 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 1.1E-36 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 1.1E-36 T 11-10-2018 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 7.0E-39 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 Gene3D G3DSA:3.50.50.60 250 398 1.3E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 Gene3D G3DSA:1.10.1060.10 11 146 3.3E-35 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 457 6.5E-24 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 469 5.9E-253 T 11-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 VV93_v1c05770 29f958b110b1f926aaf61d81240cb8be 470 Gene3D G3DSA:3.50.50.60 147 249 5.7E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Gene3D G3DSA:1.10.287.130 157 271 1.9E-7 T 11-10-2018 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 19 113 7.0E-23 T 11-10-2018 IPR029095 NarX-like, N-terminal VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 SUPERFAMILY SSF158472 160 209 8.37E-8 T 11-10-2018 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 SMART SM00304 160 212 1.9E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 PIRSF PIRSF003167 277 554 1.7E-101 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 PIRSF PIRSF003167 1 298 7.6E-74 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Pfam PF07730 Histidine kinase 349 417 5.8E-17 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 546 1.3E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Gene3D G3DSA:3.30.565.10 418 551 2.1E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Gene3D G3DSA:1.20.120.960 24 132 1.8E-12 T 11-10-2018 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 Pfam PF00672 HAMP domain 160 207 2.7E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 SUPERFAMILY SSF55874 429 545 1.57E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c41160 4af3974077e816247dc30dff78cee86d 555 SMART SM00387 458 551 3.9E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c07390 72a52773a9e1cd2806eb535989a26467 453 Pfam PF07804 HipA-like C-terminal domain 166 385 2.2E-22 T 11-10-2018 IPR012893 HipA-like, C-terminal VV93_v1c07390 72a52773a9e1cd2806eb535989a26467 453 PIRSF PIRSF028135 1 453 2.5E-233 T 11-10-2018 IPR016869 Uncharacterised conserved protein UCP028135, HipA-like VV93_v1c45600 a5c25e57cd527f56bd35c1bd7c020a9b 102 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 94 3.4E-22 T 11-10-2018 IPR007711 Toxin HigB-1 VV93_v1c45600 a5c25e57cd527f56bd35c1bd7c020a9b 102 Gene3D G3DSA:3.30.2310.20 1 98 1.3E-27 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c45600 a5c25e57cd527f56bd35c1bd7c020a9b 102 SUPERFAMILY SSF143011 4 94 3.01E-9 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c23730 649e075f657a8ce8dc28e4051f4afc16 171 Pfam PF07811 TadE-like protein 13 55 2.3E-8 T 11-10-2018 IPR012495 TadE-like VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 Gene3D G3DSA:3.30.1120.10 405 474 1.6E-109 T 11-10-2018 VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 Pfam PF16385 Domain of unknown function 383 478 6.2E-21 T 11-10-2018 IPR032158 Domain of unknown function DUF4994 VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 Gene3D G3DSA:3.40.720.10 7 404 1.6E-109 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 SUPERFAMILY SSF53649 5 483 3.79E-118 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 Pfam PF00884 Sulfatase 7 379 5.2E-69 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 ProSitePatterns PS00149 Sulfatases signature 2. 100 110 - T 11-10-2018 IPR024607 Sulfatase, conserved site VV93_v1c45000 71cfb47a2c525378b9b86f06643c08a6 488 ProSitePatterns PS00523 Sulfatases signature 1. 53 65 - T 11-10-2018 IPR024607 Sulfatase, conserved site VV93_v1c38370 7329e345643be955a8666c197903779a 155 SUPERFAMILY SSF102114 23 117 1.57E-7 T 11-10-2018 VV93_v1c38370 7329e345643be955a8666c197903779a 155 Pfam PF13353 4Fe-4S single cluster domain 12 151 2.2E-52 T 11-10-2018 VV93_v1c38370 7329e345643be955a8666c197903779a 155 Gene3D G3DSA:3.20.20.70 2 154 2.8E-22 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c38370 7329e345643be955a8666c197903779a 155 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VV93_v1c38370 7329e345643be955a8666c197903779a 155 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 151 4.2E-61 T 11-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VV93_v1c38370 7329e345643be955a8666c197903779a 155 PIRSF PIRSF000368 1 155 3.0E-59 T 11-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 Gene3D G3DSA:2.60.40.1080 338 420 5.2E-6 T 11-10-2018 VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 SUPERFAMILY SSF49373 457 505 1.57E-5 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 Gene3D G3DSA:2.60.40.1080 421 507 2.5E-10 T 11-10-2018 VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 Gene3D G3DSA:2.60.40.1080 508 596 1.1E-17 T 11-10-2018 VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 SUPERFAMILY SSF49373 509 591 2.2E-6 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments VV93_v1c36530 c802ac5006c80b71abb6f2ce8ae435ad 1162 SMART SM00635 508 589 5.3E-8 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 Gene3D G3DSA:1.10.287.40 1 106 8.1E-21 T 11-10-2018 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 230 411 1.5E-34 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PRINTS PR00981 Seryl-tRNA synthetase signature 344 360 9.8E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PRINTS PR00981 Seryl-tRNA synthetase signature 275 287 9.8E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PRINTS PR00981 Seryl-tRNA synthetase signature 287 300 9.8E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PRINTS PR00981 Seryl-tRNA synthetase signature 362 378 9.8E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PRINTS PR00981 Seryl-tRNA synthetase signature 327 340 9.8E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 433 40.042 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 Gene3D G3DSA:3.30.930.10 107 434 4.9E-113 T 11-10-2018 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 428 1.7E-171 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 3.3E-29 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 SUPERFAMILY SSF55681 118 429 1.49E-97 T 11-10-2018 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 SUPERFAMILY SSF46589 1 114 2.51E-27 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 VV93_v1c12390 46b76fc2af0b54cedb78ebb5b0107ec6 435 PIRSF PIRSF001529 1 435 1.3E-187 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 169 325 7.1E-56 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PIRSF PIRSF000149 1 346 2.3E-126 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 1 346 66.402 T 11-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 SUPERFAMILY SSF55347 164 326 2.8E-59 T 11-10-2018 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 Gene3D G3DSA:3.30.360.10 163 327 5.5E-127 T 11-10-2018 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 112 2.3E-30 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 121 134 1.6E-31 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 185 201 1.6E-31 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 281 296 1.6E-31 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 158 176 1.6E-31 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 241 258 1.6E-31 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 SUPERFAMILY SSF51735 2 188 2.38E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 3 337 3.7E-191 T 11-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 SMART SM00846 2 164 8.7E-65 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c25660 465391ccc220802bb1f9af46a5997f9d 346 Gene3D G3DSA:3.40.50.720 3 337 5.5E-127 T 11-10-2018 VV93_v1c42930 2c713820e465291db3d5d90935d55c80 576 Pfam PF00474 Sodium:solute symporter family 33 415 1.0E-27 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c42930 2c713820e465291db3d5d90935d55c80 576 Gene3D G3DSA:1.20.1730.10 17 509 8.2E-69 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c24940 d4e705538048b1168d234ba6eff3ae7b 246 Pfam PF07072 Cell division protein 18 224 2.2E-76 T 11-10-2018 IPR009777 Cell division protein ZapD VV93_v1c24940 d4e705538048b1168d234ba6eff3ae7b 246 SUPERFAMILY SSF160950 1 245 8.24E-93 T 11-10-2018 IPR036268 ZapD domain superfamily VV93_v1c24940 d4e705538048b1168d234ba6eff3ae7b 246 Hamap MF_01092 Cell division protein ZapD [zapD]. 3 245 33.546 T 11-10-2018 IPR009777 Cell division protein ZapD VV93_v1c24940 d4e705538048b1168d234ba6eff3ae7b 246 Gene3D G3DSA:2.60.440.10 173 245 7.9E-34 T 11-10-2018 IPR027462 Z ring-associated protein D, C-terminal VV93_v1c24940 d4e705538048b1168d234ba6eff3ae7b 246 Gene3D G3DSA:1.10.3900.10 12 172 2.6E-53 T 11-10-2018 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 SUPERFAMILY SSF52540 70 371 1.19E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 119 1.3E-35 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Gene3D G3DSA:3.30.1360.120 1 120 1.6E-39 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Gene3D G3DSA:3.40.50.300 216 381 1.6E-104 T 11-10-2018 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 SUPERFAMILY SSF116878 120 453 2.62E-53 T 11-10-2018 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Pfam PF01926 50S ribosome-binding GTPase 217 306 5.1E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 453 9.9E-102 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 453 33.086 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Gene3D G3DSA:1.20.120.430 121 453 1.6E-104 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 Pfam PF12631 MnmE helical domain 122 450 4.4E-62 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 VV93_v1c30050 d0e103b006f9f758051a0998e87aa47b 453 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 370 1.5E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 VV93_v1c04960 56fef2b413afd72672b86385945ae853 62 Gene3D G3DSA:1.10.238.160 2 59 3.7E-9 T 11-10-2018 VV93_v1c04960 56fef2b413afd72672b86385945ae853 62 SUPERFAMILY SSF46955 2 56 7.51E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c04960 56fef2b413afd72672b86385945ae853 62 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 51 6.4E-24 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c44500 0ca514e34c684302bb0e79fc1f49d406 233 Pfam PF03475 3-alpha domain 173 215 1.1E-10 T 11-10-2018 IPR005163 3-alpha domain VV93_v1c44500 0ca514e34c684302bb0e79fc1f49d406 233 SUPERFAMILY SSF50800 3 227 2.46E-70 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily VV93_v1c44500 0ca514e34c684302bb0e79fc1f49d406 233 Pfam PF03473 MOSC domain 49 163 4.3E-21 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 VV93_v1c44500 0ca514e34c684302bb0e79fc1f49d406 233 Gene3D G3DSA:2.40.33.20 2 232 4.3E-71 T 11-10-2018 VV93_v1c14950 404e8352bc35e40818ab7fd2f748d2e3 392 SUPERFAMILY SSF53756 11 391 1.07E-17 T 11-10-2018 VV93_v1c14950 404e8352bc35e40818ab7fd2f748d2e3 392 Gene3D G3DSA:3.40.50.11010 107 221 1.1E-6 T 11-10-2018 VV93_v1c14950 404e8352bc35e40818ab7fd2f748d2e3 392 Gene3D G3DSA:3.40.50.2000 222 368 1.7E-33 T 11-10-2018 VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 4.4E-24 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 SUPERFAMILY SSF52540 31 301 1.55E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 Pfam PF00005 ABC transporter 24 180 2.0E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 5.9E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 SMART SM00382 32 238 2.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c11250 4932caff08f0179999560a692bbc95bc 323 Gene3D G3DSA:3.40.50.300 1 321 4.8E-98 T 11-10-2018 VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 Pfam PF01327 Polypeptide deformylase 4 152 4.2E-48 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 SUPERFAMILY SSF56420 2 165 3.4E-57 T 11-10-2018 IPR036821 Peptide deformylase superfamily VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 Gene3D G3DSA:3.90.45.10 1 168 2.3E-66 T 11-10-2018 IPR036821 Peptide deformylase superfamily VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 Hamap MF_00163 Peptide deformylase [def]. 2 162 29.851 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 PIRSF PIRSF004749 1 168 6.6E-54 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 PRINTS PR01576 Peptide deformylase signature 33 62 1.5E-31 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 PRINTS PR01576 Peptide deformylase signature 101 119 1.5E-31 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 PRINTS PR01576 Peptide deformylase signature 89 100 1.5E-31 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 PRINTS PR01576 Peptide deformylase signature 120 149 1.5E-31 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c42470 7815c5055c3f55a694b6d22a6f03c28f 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 7.3E-50 T 11-10-2018 IPR023635 Peptide deformylase VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 TIGRFAM TIGR00277 HDIG: HDIG domain 125 218 2.2E-7 T 11-10-2018 IPR006675 HDIG domain VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 SUPERFAMILY SSF109604 118 289 1.95E-26 T 11-10-2018 VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 Pfam PF11871 Domain of unknown function (DUF3391) 2 96 2.0E-11 T 11-10-2018 IPR021812 Protein of unknown function DUF3391 VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 Pfam PF01966 HD domain 129 249 2.2E-15 T 11-10-2018 IPR006674 HD domain VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 Gene3D G3DSA:1.10.3210.10 1 288 1.2E-54 T 11-10-2018 VV93_v1c26000 0af8af1d028441ad1cd6bad862f27486 376 SMART SM00471 123 259 1.9E-7 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 Gene3D G3DSA:2.40.420.20 306 370 2.2E-50 T 11-10-2018 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 58 371 8.6E-38 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 SUPERFAMILY SSF111369 60 281 1.44E-22 T 11-10-2018 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 Gene3D G3DSA:2.40.50.100 68 213 2.2E-50 T 11-10-2018 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 Gene3D G3DSA:2.40.30.170 59 305 2.2E-50 T 11-10-2018 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 Gene3D G3DSA:1.10.287.470 105 179 2.2E-50 T 11-10-2018 VV93_v1c43220 1504ea54e1b88793099f3b254b16d729 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 279 7.5E-10 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 SUPERFAMILY SSF53790 13 232 5.63E-86 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 2.4E-28 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 Gene3D G3DSA:3.40.1010.10 2 120 2.7E-48 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 Gene3D G3DSA:3.30.950.10 121 241 1.6E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 PIRSF PIRSF005917 1 287 1.2E-108 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.608 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 284 3.0E-102 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 VV93_v1c05470 dbeda4eb809436a2573eb14fb9e6391b 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 11-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 VV93_v1c17410 3adc4bb3cba207b43706d456a0d60101 269 Gene3D G3DSA:1.10.260.40 3 73 7.1E-6 T 11-10-2018 VV93_v1c17410 3adc4bb3cba207b43706d456a0d60101 269 SUPERFAMILY SSF47413 5 68 9.96E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c17410 3adc4bb3cba207b43706d456a0d60101 269 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 13 66 7.4E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c17410 3adc4bb3cba207b43706d456a0d60101 269 SMART SM00530 12 66 0.003 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c06380 4674845d49e48a1dd03578db22e1a145 356 Gene3D G3DSA:3.20.20.70 3 349 4.1E-156 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c06380 4674845d49e48a1dd03578db22e1a145 356 PIRSF PIRSF001361 1 354 2.9E-162 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c06380 4674845d49e48a1dd03578db22e1a145 356 SUPERFAMILY SSF51569 8 345 2.11E-138 T 11-10-2018 VV93_v1c06380 4674845d49e48a1dd03578db22e1a145 356 Pfam PF00793 DAHP synthetase I family 42 340 3.7E-104 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c06380 4674845d49e48a1dd03578db22e1a145 356 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 10 347 7.7E-162 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c13920 bce911b154cce0c679f8de2c0cdc3db7 191 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 19 82 1.4E-9 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 VV93_v1c44610 4443e88c5a5af6712529573cfb7f61ec 171 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 155 4.2E-29 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 SUPERFAMILY SSF50104 2 115 4.51E-48 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 PRINTS PR00061 Ribosomal protein L19 signature 88 113 7.6E-42 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 PRINTS PR00061 Ribosomal protein L19 signature 4 33 7.6E-42 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 PRINTS PR00061 Ribosomal protein L19 signature 34 63 7.6E-42 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 1.0E-52 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 31.566 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 PIRSF PIRSF002191 1 117 8.7E-52 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 Gene3D G3DSA:2.30.30.790 2 117 1.0E-16 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24960 ffe83418104faa07c1a3fa28d4508a6d 117 Pfam PF01245 Ribosomal protein L19 3 113 8.6E-51 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 Pfam PF00375 Sodium:dicarboxylate symporter family 9 405 1.3E-131 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 56 76 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 86 111 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 231 250 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 333 352 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 298 324 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 360 380 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 5.1E-53 T 11-10-2018 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 Gene3D G3DSA:1.10.3860.10 1 425 2.6E-140 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c32080 2894892fae509190c46e4548a357c449 434 SUPERFAMILY SSF118215 9 407 1.96E-120 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 Gene3D G3DSA:1.20.1530.20 4 386 2.7E-84 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 PRINTS PR00335 TrkA potassium uptake protein signature 401 415 5.1E-7 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 PRINTS PR00335 TrkA potassium uptake protein signature 418 432 5.1E-7 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 PRINTS PR00335 TrkA potassium uptake protein signature 447 457 5.1E-7 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 PRINTS PR00335 TrkA potassium uptake protein signature 458 468 5.1E-7 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 16 283 2.2E-82 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 Pfam PF00999 Sodium/hydrogen exchanger family 12 372 2.2E-66 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 SUPERFAMILY SSF51735 401 529 1.31E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 Gene3D G3DSA:3.40.50.720 399 560 5.0E-36 T 11-10-2018 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 Pfam PF02254 TrkA-N domain 402 512 8.7E-23 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c27710 072a2db915b7d18f3991b5f5cab88f95 600 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 3 598 47.856 T 11-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 Gene3D G3DSA:3.40.50.720 141 264 4.7E-13 T 11-10-2018 VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 SUPERFAMILY SSF51735 142 269 7.48E-6 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 21 466 5.3E-152 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 24 466 2.9E-171 T 11-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 Pfam PF02397 Bacterial sugar transferase 276 458 1.4E-66 T 11-10-2018 IPR003362 Bacterial sugar transferase VV93_v1c33820 2bdae8d0e1363cddc92fc00d00dc4c39 466 Pfam PF13727 CoA-binding domain 63 240 2.8E-38 T 11-10-2018 VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Gene3D G3DSA:3.30.70.270 511 684 1.1E-60 T 11-10-2018 VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SUPERFAMILY SSF55785 267 380 1.27E-21 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 389 508 1.5E-17 T 11-10-2018 IPR000014 PAS domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 259 386 4.9E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Pfam PF08447 PAS fold 285 373 9.7E-22 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SMART SM00091 260 329 0.025 T 11-10-2018 IPR000014 PAS domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SMART SM00091 387 456 3.8E-5 T 11-10-2018 IPR000014 PAS domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Pfam PF13426 PAS domain 398 499 1.7E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 508 672 3.0E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SMART SM00086 336 379 1.1E-9 T 11-10-2018 IPR001610 PAC motif VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SMART SM00086 459 501 0.54 T 11-10-2018 IPR001610 PAC motif VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Gene3D G3DSA:3.30.450.20 258 327 2.1E-14 T 11-10-2018 VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SUPERFAMILY SSF55785 397 498 1.69E-22 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Pfam PF00990 Diguanylate cyclase, GGDEF domain 512 669 7.1E-53 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SUPERFAMILY SSF55073 517 676 1.73E-51 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 SMART SM00267 501 674 8.7E-70 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Gene3D G3DSA:2.10.70.100 333 380 2.1E-11 T 11-10-2018 VV93_v1c42540 db602ba44131bb4650d7b04417b83600 685 Gene3D G3DSA:3.30.450.20 387 510 8.6E-27 T 11-10-2018 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 424 7.0E-211 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 Pfam PF08013 Tagatose 6 phosphate kinase 4 424 4.7E-193 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 SUPERFAMILY SSF51569 4 424 2.56E-163 T 11-10-2018 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 PIRSF PIRSF009264 1 430 7.5E-205 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 Gene3D G3DSA:3.20.20.70 8 416 1.3E-169 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44200 437b7280c624fb5ce91f620cb2b70470 435 Gene3D G3DSA:1.10.400.20 288 411 1.3E-169 T 11-10-2018 VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 Gene3D G3DSA:3.40.640.10 22 269 3.1E-145 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 SUPERFAMILY SSF53383 9 371 1.14E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 PIRSF PIRSF000524 5 373 4.1E-113 T 11-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 Pfam PF00266 Aminotransferase class-V 13 356 6.2E-37 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 Gene3D G3DSA:3.90.1150.10 9 371 3.1E-145 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c26800 d50345d9227cec8aa626b45f2006ccab 373 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 SUPERFAMILY SSF56601 12 284 7.32E-86 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 264 1.6E-92 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 284 374 2.0E-27 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 150 163 3.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 123 140 3.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 67 78 3.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 SMART SM00936 284 374 1.4E-37 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 SUPERFAMILY SSF69189 284 376 9.22E-28 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 Gene3D G3DSA:3.40.710.10 34 284 1.5E-90 T 11-10-2018 VV93_v1c08400 280ced574901612a042e78cd2ad00638 393 Gene3D G3DSA:2.60.410.10 285 374 1.2E-30 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 SUPERFAMILY SSF51055 347 392 6.8E-13 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 Gene3D G3DSA:2.70.50.50 26 219 8.1E-62 T 11-10-2018 VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 SMART SM00495 350 393 4.8E-8 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 Gene3D G3DSA:2.10.10.20 350 393 1.6E-18 T 11-10-2018 VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 26 214 1.3E-34 T 11-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal VV93_v1c30990 95fe2e1e7f0ad0604abf300ed0e80142 393 SUPERFAMILY SSF81296 26 216 3.78E-47 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c12270 e225cddd26ad49caedde240d7b3198ad 1214 SUPERFAMILY SSF55486 294 670 3.42E-17 T 11-10-2018 VV93_v1c12270 e225cddd26ad49caedde240d7b3198ad 1214 Gene3D G3DSA:3.40.390.10 538 671 8.0E-6 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VV93_v1c12270 e225cddd26ad49caedde240d7b3198ad 1214 Pfam PF16313 Met-zincin 601 721 9.4E-9 T 11-10-2018 IPR032534 Domain of unknown function DUF4953 VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 Gene3D G3DSA:2.60.40.10 254 352 2.6E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 Gene3D G3DSA:2.60.40.10 418 514 1.9E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 SUPERFAMILY SSF51445 615 933 9.2E-37 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 Gene3D G3DSA:2.60.40.10 161 253 8.7E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 Gene3D G3DSA:2.60.40.10 516 608 4.9E-23 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 SMART SM00636 616 929 0.0023 T 11-10-2018 IPR011583 Chitinase II GO:0008061 VV93_v1c17600 6a2c979b895655851fb70c4edc103ea6 950 Pfam PF00704 Glycosyl hydrolases family 18 618 928 8.3E-20 T 11-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VV93_v1c19580 265544770fc159b5f0030af0cf2dfb3a 58 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 51 4.7E-26 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c19580 265544770fc159b5f0030af0cf2dfb3a 58 Gene3D G3DSA:1.10.238.160 2 57 3.0E-5 T 11-10-2018 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 SUPERFAMILY SSF52540 151 341 1.48E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 7.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 7.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.976 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 Gene3D G3DSA:2.70.210.12 1 158 7.4E-59 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 Pfam PF01018 GTP1/OBG 4 156 2.6E-56 T 11-10-2018 IPR006169 GTP1/OBG domain VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 SUPERFAMILY SSF82051 2 157 2.35E-55 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 6.8E-144 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 PIRSF PIRSF002401 1 374 2.1E-137 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 Pfam PF01926 50S ribosome-binding GTPase 161 284 2.3E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c04390 86a7936613ff6412c517f1e9ca2b99b7 389 Gene3D G3DSA:3.40.50.300 159 336 2.0E-52 T 11-10-2018 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 25 73 1.7E-8 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 Gene3D G3DSA:3.20.20.70 48 293 1.3E-23 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 155.403 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 Pfam PF04055 Radical SAM superfamily 91 252 1.2E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 SMART SM00729 84 293 3.9E-19 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 SUPERFAMILY SSF102114 52 314 1.31E-67 T 11-10-2018 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 2.4E-149 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c08370 5c6eeb798b070d98c1e85cc2381de204 321 PIRSF PIRSF005963 1 320 1.5E-129 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SUPERFAMILY SSF55073 492 646 1.8E-45 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SMART SM00267 476 647 3.3E-58 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Pfam PF17152 Periplasmic sensor domain 44 139 1.4E-8 T 11-10-2018 IPR033417 Periplasmic sensor domain CHASE8 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SUPERFAMILY SSF158472 181 227 2.75E-5 T 11-10-2018 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SUPERFAMILY SSF55785 234 350 8.67E-5 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Pfam PF00990 Diguanylate cyclase, GGDEF domain 487 642 5.1E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Gene3D G3DSA:3.30.450.20 358 479 2.7E-16 T 11-10-2018 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Pfam PF13426 PAS domain 258 352 0.0059 T 11-10-2018 IPR000014 PAS domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Pfam PF00989 PAS fold 366 410 1.5E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 483 644 6.5E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SUPERFAMILY SSF55785 349 451 8.77E-16 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Gene3D G3DSA:1.20.1480.50 135 238 4.4E-5 T 11-10-2018 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SMART SM00091 246 312 2.1 T 11-10-2018 IPR000014 PAS domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 SMART SM00091 361 427 1.4E-11 T 11-10-2018 IPR000014 PAS domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 366 482 5.3E-15 T 11-10-2018 IPR000014 PAS domain VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Gene3D G3DSA:3.30.450.20 242 350 1.0E-8 T 11-10-2018 VV93_v1c37700 1fb7578d98cb1a1a76fa8c8979d59732 662 Gene3D G3DSA:3.30.70.270 480 649 2.4E-54 T 11-10-2018 VV93_v1c21910 c00c1811f350d63e2fa3fb1f23bceffd 700 Pfam PF07196 Flagellin hook IN motif 125 178 2.1E-9 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c21910 c00c1811f350d63e2fa3fb1f23bceffd 700 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 465 689 1.6E-54 T 11-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 VV93_v1c21910 c00c1811f350d63e2fa3fb1f23bceffd 700 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 107 3.4E-20 T 11-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 VV93_v1c28660 c1745763b52b5daff16e77dc51fbcb8e 362 Pfam PF01595 Domain of unknown function DUF21 9 177 7.7E-29 T 11-10-2018 IPR002550 CNNM, transmembrane domain VV93_v1c28660 c1745763b52b5daff16e77dc51fbcb8e 362 SUPERFAMILY SSF54631 181 315 8.1E-25 T 11-10-2018 VV93_v1c28660 c1745763b52b5daff16e77dc51fbcb8e 362 Gene3D G3DSA:3.10.580.10 186 315 1.2E-39 T 11-10-2018 VV93_v1c28660 c1745763b52b5daff16e77dc51fbcb8e 362 Pfam PF00571 CBS domain 262 313 4.3E-6 T 11-10-2018 IPR000644 CBS domain VV93_v1c21210 4c1a7020ec9a1ec4f10e49191bd442c0 368 Gene3D G3DSA:3.40.50.2300 9 150 9.7E-34 T 11-10-2018 VV93_v1c21210 4c1a7020ec9a1ec4f10e49191bd442c0 368 SUPERFAMILY SSF52172 22 138 2.85E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c21210 4c1a7020ec9a1ec4f10e49191bd442c0 368 Pfam PF00072 Response regulator receiver domain 23 132 2.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21210 4c1a7020ec9a1ec4f10e49191bd442c0 368 SMART SM00448 20 132 6.1E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.7E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 7.1E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 SUPERFAMILY SSF51735 6 252 2.07E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 Gene3D G3DSA:3.40.50.720 1 253 3.4E-80 T 11-10-2018 VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 250 1.8E-57 T 11-10-2018 VV93_v1c44860 421266205bd36d3d81c7ad911e7da5ee 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 8.6E-129 T 11-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 VV93_v1c07690 aa5850abe827bbf625dc531b6ea816a9 428 SUPERFAMILY SSF51004 37 264 1.7E-9 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily VV93_v1c07690 aa5850abe827bbf625dc531b6ea816a9 428 Gene3D G3DSA:2.130.10.10 42 268 1.7E-5 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c44910 95af4cac545165320af08e96cc73e259 648 SMART SM00283 386 647 2.0E-31 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c44910 95af4cac545165320af08e96cc73e259 648 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 458 613 3.6E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c44910 95af4cac545165320af08e96cc73e259 648 SMART SM00304 319 371 2.2E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c44910 95af4cac545165320af08e96cc73e259 648 Gene3D G3DSA:1.10.287.950 319 648 1.7E-55 T 11-10-2018 VV93_v1c44910 95af4cac545165320af08e96cc73e259 648 SUPERFAMILY SSF58104 339 646 1.7E-54 T 11-10-2018 VV93_v1c20110 605a2798b8fb4149162b81d1844492cb 240 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 237 51.49 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 VV93_v1c20110 605a2798b8fb4149162b81d1844492cb 240 Pfam PF04288 MukE-like family 10 234 1.6E-118 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 VV93_v1c20110 605a2798b8fb4149162b81d1844492cb 240 Gene3D G3DSA:1.10.10.2250 1 78 1.2E-35 T 11-10-2018 VV93_v1c20110 605a2798b8fb4149162b81d1844492cb 240 Gene3D G3DSA:1.10.10.2260 88 194 3.9E-49 T 11-10-2018 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 Gene3D G3DSA:1.10.10.10 1 86 1.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 SUPERFAMILY SSF53850 88 294 6.33E-37 T 11-10-2018 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 Gene3D G3DSA:3.40.190.10 169 267 5.5E-47 T 11-10-2018 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 4.5E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 SUPERFAMILY SSF46785 2 82 3.63E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 Gene3D G3DSA:3.40.190.10 88 291 5.5E-47 T 11-10-2018 VV93_v1c36700 20be34555fb16c3968cf3927048074cf 301 Pfam PF03466 LysR substrate binding domain 96 296 1.0E-24 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c39410 33cbc3d0fb43882fd65708afec4deb41 403 Gene3D G3DSA:2.60.200.20 8 125 8.9E-19 T 11-10-2018 VV93_v1c39410 33cbc3d0fb43882fd65708afec4deb41 403 SUPERFAMILY SSF49879 23 110 5.74E-20 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 VV93_v1c39410 33cbc3d0fb43882fd65708afec4deb41 403 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 3 398 1.9E-125 T 11-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein VV93_v1c39410 33cbc3d0fb43882fd65708afec4deb41 403 SMART SM00240 31 82 4.3E-9 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 VV93_v1c39410 33cbc3d0fb43882fd65708afec4deb41 403 Pfam PF00498 FHA domain 32 101 7.8E-15 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SUPERFAMILY SSF56507 903 1225 3.14E-134 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SUPERFAMILY SSF47644 654 740 4.97E-29 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Pfam PF02607 B12 binding domain 660 734 9.7E-26 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SUPERFAMILY SSF82282 8 400 1.16E-118 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Pfam PF02574 Homocysteine S-methyltransferase 18 325 4.8E-82 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:3.10.196.10 909 1224 6.6E-148 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:3.20.20.330 3 340 1.2E-129 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:1.10.288.10 938 1094 6.6E-148 T 11-10-2018 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Pfam PF02310 B12 binding domain 749 842 1.7E-17 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 940 1210 2.4E-124 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 TIGRFAM TIGR02082 metH: methionine synthase 13 1194 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Pfam PF00809 Pterin binding enzyme 361 599 1.4E-58 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:3.20.20.20 341 643 4.5E-131 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:3.40.50.280 745 896 8.3E-56 T 11-10-2018 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SUPERFAMILY SSF52242 745 895 2.75E-45 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SUPERFAMILY SSF51717 357 631 2.49E-87 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 Gene3D G3DSA:1.10.1240.10 650 738 9.8E-41 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 SMART SM01018 658 741 3.6E-45 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c26820 76d8f9a984dd4362385cc50d66dd0720 1226 PIRSF PIRSF000381 3 1197 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c23190 da0c7f5960ca140ad6b40d89755f746f 199 Gene3D G3DSA:3.40.50.880 1 194 3.1E-48 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c23190 da0c7f5960ca140ad6b40d89755f746f 199 SUPERFAMILY SSF52317 3 192 3.11E-44 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c23190 da0c7f5960ca140ad6b40d89755f746f 199 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 4 184 3.3E-62 T 11-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 VV93_v1c23190 da0c7f5960ca140ad6b40d89755f746f 199 Pfam PF01965 DJ-1/PfpI family 3 169 1.8E-37 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VV93_v1c07990 9156c985172a1bb387f0d9b59ac46ca2 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 89.763 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VV93_v1c07990 9156c985172a1bb387f0d9b59ac46ca2 149 Pfam PF03477 ATP cone domain 50 136 2.3E-16 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 VV93_v1c07990 9156c985172a1bb387f0d9b59ac46ca2 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 5.1E-73 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 PRINTS PR00502 NUDIX hydrolase family signature 48 63 3.1E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 PRINTS PR00502 NUDIX hydrolase family signature 34 48 3.1E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 Pfam PF00293 NUDIX domain 14 117 1.2E-11 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 SUPERFAMILY SSF55811 9 134 4.6E-22 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c16570 fa6754706fd8c54d701ee5dd4ce7547c 135 Gene3D G3DSA:3.90.79.10 4 132 5.1E-18 T 11-10-2018 VV93_v1c31320 094d074a0a58f6bfa518efd0a2c65231 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 88 223 3.6E-9 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c31320 094d074a0a58f6bfa518efd0a2c65231 259 Gene3D G3DSA:3.40.190.10 185 222 6.9E-7 T 11-10-2018 VV93_v1c31320 094d074a0a58f6bfa518efd0a2c65231 259 Gene3D G3DSA:3.40.190.10 88 184 6.9E-7 T 11-10-2018 VV93_v1c31320 094d074a0a58f6bfa518efd0a2c65231 259 SUPERFAMILY SSF53850 103 225 1.19E-14 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00387 718 834 1.6E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF00989 PAS fold 474 582 2.3E-11 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00091 471 538 3.1E-6 T 11-10-2018 IPR000014 PAS domain VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF55874 660 830 1.7E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:3.30.565.10 670 838 1.5E-51 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:3.30.450.20 467 585 2.1E-17 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:1.10.287.130 586 669 1.6E-29 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 718 830 1.2E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF00512 His Kinase A (phospho-acceptor) domain 606 671 2.9E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF00072 Response regulator receiver domain 855 965 4.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF00072 Response regulator receiver domain 994 1104 1.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF47226 1087 1228 3.93E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF52172 989 1110 3.98E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:3.30.450.40 297 465 5.9E-6 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF55785 476 589 2.27E-16 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF52172 851 970 6.69E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF55781 287 450 1.52E-7 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:3.40.50.12740 991 1143 3.0E-40 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Pfam PF01627 Hpt domain 1166 1250 2.6E-13 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00448 852 965 4.0E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00448 991 1104 4.0E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 474 593 2.0E-15 T 11-10-2018 IPR000014 PAS domain VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:3.40.50.2300 850 969 1.4E-25 T 11-10-2018 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SUPERFAMILY SSF47384 591 672 1.04E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00073 1155 1252 1.2E-5 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 Gene3D G3DSA:1.20.120.160 1144 1261 2.1E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 PRINTS PR00344 Bacterial sensor protein C-terminal signature 794 812 8.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 PRINTS PR00344 Bacterial sensor protein C-terminal signature 759 773 8.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 831 8.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 PRINTS PR00344 Bacterial sensor protein C-terminal signature 777 787 8.5E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43720 52211baf2ca5b06816f894d17d78a6f0 1328 SMART SM00388 606 671 9.2E-27 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Pfam PF00271 Helicase conserved C-terminal domain 216 324 3.5E-19 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 SUPERFAMILY SSF52540 59 341 1.38E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 133 142 - T 11-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Pfam PF16124 RecQ zinc-binding 511 558 5.5E-8 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 SMART SM00490 244 325 4.8E-25 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 SMART SM00487 14 210 1.6E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Pfam PF00270 DEAD/DEAH box helicase 21 180 2.6E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Gene3D G3DSA:3.40.50.300 202 387 2.1E-47 T 11-10-2018 VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Gene3D G3DSA:3.40.50.300 1 200 7.3E-69 T 11-10-2018 VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 349 4.0E-112 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 VV93_v1c22980 6aeff5572310cf6bb30395ab7d2a04df 639 Gene3D G3DSA:1.10.10.10 493 637 4.9E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 Gene3D G3DSA:1.20.140.70 12 159 4.6E-10 T 11-10-2018 VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 5 593 4.1E-219 T 11-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 SUPERFAMILY SSF55486 5 580 2.93E-91 T 11-10-2018 VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 Gene3D G3DSA:1.10.1370.20 219 597 1.2E-106 T 11-10-2018 VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 Pfam PF01432 Peptidase family M3 339 580 2.0E-22 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VV93_v1c13880 a3898e8a38a492ea80b09cf791ec030e 599 Pfam PF08439 Oligopeptidase F 106 174 5.3E-10 T 11-10-2018 IPR013647 Oligopeptidase F, N-terminal domain VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 SMART SM01003 4 137 7.5E-79 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 Gene3D G3DSA:3.40.50.720 130 305 1.2E-135 T 11-10-2018 VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 SUPERFAMILY SSF52283 1 360 8.5E-67 T 11-10-2018 VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 4.3E-83 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 SMART SM01002 149 297 9.6E-89 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 Gene3D G3DSA:3.40.50.720 3 353 1.2E-135 T 11-10-2018 VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 PIRSF PIRSF000183 1 371 8.4E-157 T 11-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 3.9E-155 T 11-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 7.9E-46 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VV93_v1c12340 001e2f96003a1cdb9bbe13c1c03a9c3f 374 SUPERFAMILY SSF51735 137 303 1.27E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c29060 e8ae595b369e5858594b09431b90aa20 223 Hamap MF_02088 Probable queuosine precursor transporter. 7 214 15.629 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VV93_v1c29060 e8ae595b369e5858594b09431b90aa20 223 Pfam PF02592 Putative vitamin uptake transporter 43 199 4.2E-38 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VV93_v1c29060 e8ae595b369e5858594b09431b90aa20 223 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 13 204 4.6E-62 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 VV93_v1c23110 a2735417f4fa18fd730fd2bed76200ac 189 Pfam PF03923 Uncharacterized lipoprotein 28 186 1.1E-51 T 11-10-2018 IPR005619 Uncharacterised protein family, YajG VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 Pfam PF00318 Ribosomal protein S2 9 224 6.1E-93 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 3.9E-106 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.85 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 Gene3D G3DSA:1.10.287.610 103 150 4.4E-91 T 11-10-2018 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 SUPERFAMILY SSF52313 6 232 3.92E-95 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 Gene3D G3DSA:3.40.50.10490 8 218 4.4E-91 T 11-10-2018 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22760 41e705eebc3ea5b113708b0bf32bacd6 242 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.1E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c28090 7cb2cc88e29d8f5dd9489e72a587949b 295 Pfam PF00892 EamA-like transporter family 156 294 6.9E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c28090 7cb2cc88e29d8f5dd9489e72a587949b 295 Pfam PF00892 EamA-like transporter family 5 135 3.5E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c28090 7cb2cc88e29d8f5dd9489e72a587949b 295 SUPERFAMILY SSF103481 36 140 1.44E-12 T 11-10-2018 VV93_v1c28090 7cb2cc88e29d8f5dd9489e72a587949b 295 SUPERFAMILY SSF103481 217 294 4.97E-11 T 11-10-2018 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.4E-44 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.4E-44 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.4E-44 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.4E-44 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 4.8E-25 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c24280 5e54b0f8cdbd829ae08cafb16bc09115 110 Pfam PF03840 Preprotein translocase SecG subunit 4 71 1.7E-21 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 SUPERFAMILY SSF55594 4 90 2.09E-25 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 PRINTS PR00107 Phosphocarrier protein signature 55 72 1.9E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 PRINTS PR00107 Phosphocarrier protein signature 14 30 1.9E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 PRINTS PR00107 Phosphocarrier protein signature 40 55 1.9E-9 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 Pfam PF00381 PTS HPr component phosphorylation site 4 84 2.0E-24 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 41 56 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 3 84 5.3E-23 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c04120 59bcf19787353b4c0c601ad2e32be095 91 Gene3D G3DSA:3.30.1340.10 1 85 3.3E-27 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 Pfam PF00970 Oxidoreductase FAD-binding domain 28 101 3.7E-7 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 Pfam PF00175 Oxidoreductase NAD-binding domain 124 234 4.8E-17 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 SUPERFAMILY SSF63380 11 107 1.7E-18 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 Gene3D G3DSA:3.40.50.80 110 259 6.6E-38 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 SUPERFAMILY SSF52343 117 259 5.76E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c43540 679dbe917677d1ca457cd8915d527f38 259 Gene3D G3DSA:2.40.30.10 1 107 1.9E-24 T 11-10-2018 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 365 510 2.0E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 Gene3D G3DSA:1.10.287.950 213 545 3.4E-78 T 11-10-2018 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 SMART SM00283 283 544 1.9E-76 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 Pfam PF00672 HAMP domain 215 264 6.2E-12 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 SUPERFAMILY SSF58104 236 544 7.98E-79 T 11-10-2018 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 SMART SM00304 214 268 1.0E-15 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14440 40f053abc469416b40eb827e9a0bfa63 545 SMART SM00304 303 370 42.0 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c18730 38ca504fcfc001663b0ac07b6f1ee572 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 1.2E-27 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ VV93_v1c02240 079e3370009e99244106bb483f980647 210 SUPERFAMILY SSF74653 121 207 1.01E-17 T 11-10-2018 VV93_v1c02240 079e3370009e99244106bb483f980647 210 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 132 209 2.1E-11 T 11-10-2018 IPR006260 TonB/TolA, C-terminal VV93_v1c02240 079e3370009e99244106bb483f980647 210 Gene3D G3DSA:3.30.1150.10 111 209 5.5E-21 T 11-10-2018 VV93_v1c02240 079e3370009e99244106bb483f980647 210 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 130 208 5.6E-15 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:1.20.1640.10 8 499 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 PRINTS PR00702 Acriflavin resistance protein family signature 324 347 1.2E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.2E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 PRINTS PR00702 Acriflavin resistance protein family signature 378 402 1.2E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 PRINTS PR00702 Acriflavin resistance protein family signature 431 454 1.2E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.2E-22 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.2090.10 173 265 1.4E-250 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.70.1320 131 318 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82693 136 317 1.86E-7 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82714 725 797 1.15E-8 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.70.1430 38 810 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82714 177 259 2.09E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.70.1430 557 667 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 4.9E-157 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.70.1440 668 859 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82866 797 1022 2.49E-47 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82866 286 480 4.71E-34 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:1.20.1640.10 500 1019 1.4E-250 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 SUPERFAMILY SSF82693 38 131 7.32E-18 T 11-10-2018 VV93_v1c31540 ba64f4db024a416ad61d1b57b95419f2 1033 Gene3D G3DSA:3.30.2090.10 715 802 1.4E-250 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 Pfam PF00731 AIR carboxylase 2 150 1.1E-64 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 156 32.321 T 11-10-2018 IPR033747 Class I PurE VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 SMART SM01001 1 152 2.5E-104 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 SUPERFAMILY SSF52255 2 158 1.44E-66 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 PIRSF PIRSF001338 1 160 1.7E-68 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 Gene3D G3DSA:3.40.50.7700 1 161 1.1E-72 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 VV93_v1c29410 96fed50dea3d0faedee874e2abe1d3c7 161 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 3 157 2.3E-67 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 VV93_v1c44230 6558614a6abb638f772b3b983ba719af 507 Pfam PF12792 CSS motif domain associated with EAL 45 223 6.0E-7 T 11-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VV93_v1c44230 6558614a6abb638f772b3b983ba719af 507 Pfam PF00563 EAL domain 259 488 1.1E-57 T 11-10-2018 IPR001633 EAL domain VV93_v1c44230 6558614a6abb638f772b3b983ba719af 507 SUPERFAMILY SSF141868 265 499 1.44E-66 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c44230 6558614a6abb638f772b3b983ba719af 507 Gene3D G3DSA:3.20.20.450 256 505 3.8E-67 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c44230 6558614a6abb638f772b3b983ba719af 507 SMART SM00052 251 493 2.6E-65 T 11-10-2018 IPR001633 EAL domain VV93_v1c41950 dc209e7541af6d9a903a70d472b52a2a 236 Pfam PF00753 Metallo-beta-lactamase superfamily 15 163 2.1E-7 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c41950 dc209e7541af6d9a903a70d472b52a2a 236 SMART SM00849 15 197 4.8E-16 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c41950 dc209e7541af6d9a903a70d472b52a2a 236 Gene3D G3DSA:3.60.15.10 2 232 1.4E-43 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c41950 dc209e7541af6d9a903a70d472b52a2a 236 SUPERFAMILY SSF56281 10 202 1.68E-28 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 12 358 1.6E-127 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 Gene3D G3DSA:3.40.430.10 142 367 1.8E-63 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 104 8.3E-19 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 SUPERFAMILY SSF53597 149 361 1.19E-52 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 SUPERFAMILY SSF53927 8 150 2.3E-47 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 360 2.2E-55 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 Pfam PF01872 RibD C-terminal domain 152 357 5.9E-47 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 PIRSF PIRSF006769 3 366 2.0E-119 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 Gene3D G3DSA:3.40.140.10 4 140 1.4E-45 T 11-10-2018 VV93_v1c08000 f5592bf2e6351dcf0461a937f3c8d7d1 368 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 77 152 1.3E-23 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Pfam PF03449 Transcription elongation factor, N-terminal 1 70 7.2E-25 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Gene3D G3DSA:3.10.50.30 73 155 5.2E-32 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Gene3D G3DSA:1.10.287.180 1 72 3.0E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 151 26.682 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 116 132 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 SUPERFAMILY SSF46557 2 73 7.32E-26 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 153 50.108 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 13 44 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 1 153 2.1E-71 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 SUPERFAMILY SSF54534 76 152 3.14E-20 T 11-10-2018 VV93_v1c02140 878fd208b856c99b90eb511e6d39690d 156 PIRSF PIRSF006092 1 154 5.0E-44 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 33.083 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 SMART SM00851 25 118 3.3E-24 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 11-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 150 1.1E-64 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 Pfam PF02142 MGS-like domain 25 118 5.4E-19 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 Gene3D G3DSA:3.40.50.1380 1 151 1.4E-66 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 SUPERFAMILY SSF52335 3 150 1.96E-58 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily VV93_v1c36310 c4fed40966fa6d15a311c888c9f74376 151 PIRSF PIRSF006614 8 151 7.3E-64 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Pfam PF00072 Response regulator receiver domain 512 623 8.9E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SMART SM00388 240 305 3.9E-27 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SMART SM00387 352 468 2.0E-38 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Gene3D G3DSA:1.10.287.130 206 303 5.0E-30 T 11-10-2018 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 2.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 2.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 2.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 2.9E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SUPERFAMILY SSF55874 294 466 6.42E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Gene3D G3DSA:3.30.565.10 304 468 7.8E-51 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 36 142 2.2E-16 T 11-10-2018 IPR033414 Periplasmic sensor domain VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SUPERFAMILY SSF47384 225 307 3.53E-22 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 305 3.5E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SUPERFAMILY SSF52172 510 628 7.54E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Gene3D G3DSA:3.40.50.12740 509 641 2.9E-38 T 11-10-2018 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 SMART SM00448 509 623 2.3E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c30190 9de4080014985f57d883bec1662d0eef 642 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 465 6.5E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 186 6.6E-25 T 11-10-2018 VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 SUPERFAMILY SSF56784 2 187 1.07E-20 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 Gene3D G3DSA:3.40.50.1000 3 190 2.5E-30 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 Gene3D G3DSA:1.20.1440.100 15 87 2.5E-30 T 11-10-2018 VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 190 6.0E-36 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like VV93_v1c31020 bd20430fd15b4ab3bef2a1421d223a93 200 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 183 1.1E-30 T 11-10-2018 VV93_v1c36850 089d0638e5f91152e7e0c7daf38b5076 248 SUPERFAMILY SSF56317 5 242 3.92E-46 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c36850 089d0638e5f91152e7e0c7daf38b5076 248 Pfam PF00795 Carbon-nitrogen hydrolase 7 239 4.7E-23 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 VV93_v1c36850 089d0638e5f91152e7e0c7daf38b5076 248 Gene3D G3DSA:3.60.110.10 1 245 8.3E-45 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 SUPERFAMILY SSF54675 26 140 2.39E-33 T 11-10-2018 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 38 306 1.3E-96 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 54 139 2.0E-27 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 SUPERFAMILY SSF51690 142 306 2.94E-60 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 PIRSF PIRSF006250 28 307 2.4E-103 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 Gene3D G3DSA:3.90.1170.20 33 305 1.0E-126 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 142 305 3.2E-60 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 VV93_v1c24880 3534ad46f0c6048124aaef0f709af057 307 Gene3D G3DSA:3.20.20.70 150 296 1.0E-126 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 Gene3D G3DSA:1.10.10.10 128 224 9.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 SMART SM00862 149 223 6.6E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 Pfam PF00072 Response regulator receiver domain 9 117 2.7E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 223 1.9E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 SMART SM00448 6 117 1.9E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 SUPERFAMILY SSF52172 4 132 4.41E-40 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 SUPERFAMILY SSF46894 123 223 3.4E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c19430 612aba7dfa43208b3ba75b7efd512b27 224 Gene3D G3DSA:3.40.50.2300 1 127 2.4E-36 T 11-10-2018 VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Gene3D G3DSA:1.25.40.10 23 154 4.9E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SUPERFAMILY SSF81901 33 108 6.02E-6 T 11-10-2018 VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 267 301 1.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 152 186 4.4E-7 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 188 222 0.0013 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 99 114 170.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 116 150 6.4E-6 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Pfam PF08238 Sel1 repeat 244 262 0.62 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 Gene3D G3DSA:1.25.40.10 170 333 2.5E-39 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 266 301 3.5E-6 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 83 114 11.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 187 222 7.1E-6 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 115 150 3.6E-8 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 151 186 4.6E-7 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 224 265 5.3 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SMART SM00671 47 82 300.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c44320 337b720b0b6b5b070ce6913fb2ad0842 334 SUPERFAMILY SSF81901 88 305 8.37E-47 T 11-10-2018 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Gene3D G3DSA:3.30.1360.40 236 332 6.0E-236 T 11-10-2018 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 505 1.7E-158 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Gene3D G3DSA:2.120.10.90 534 865 1.4E-123 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 SMART SM00434 11 498 5.0E-302 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Gene3D G3DSA:1.10.268.10 369 492 6.0E-236 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 865 24.647 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 709 0.0 T 11-10-2018 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Gene3D G3DSA:3.90.199.10 33 520 6.0E-236 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 SUPERFAMILY SSF101904 532 875 1.1E-105 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 SUPERFAMILY SSF56719 30 520 1.11E-187 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 583 4.3E-7 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 735 761 1.8E-6 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 636 8.8E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 709 0.64 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 3.2E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 817 863 1.6E-12 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c11660 8ada582b0c0d2383d001cadc33788d96 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 767 813 7.4E-14 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 PIRSF PIRSF000485 1 480 3.1E-169 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 Gene3D G3DSA:3.40.50.2020 276 440 1.6E-159 T 11-10-2018 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 Pfam PF13522 Glutamine amidotransferase domain 64 207 3.5E-17 T 11-10-2018 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 SUPERFAMILY SSF53271 249 482 3.15E-68 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 Pfam PF00156 Phosphoribosyl transferase domain 280 391 2.5E-6 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 463 44.854 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 SUPERFAMILY SSF56235 2 256 7.98E-72 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 463 2.2E-165 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 VV93_v1c21230 971428b54437116d6d18dbfbfa09db30 504 Gene3D G3DSA:3.60.20.10 2 411 1.6E-159 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c44780 1105f333b3fa3e4b2051aac79c723250 215 SMART SM00934 5 206 3.4E-26 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c44780 1105f333b3fa3e4b2051aac79c723250 215 SUPERFAMILY SSF51366 1 214 6.28E-37 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c44780 1105f333b3fa3e4b2051aac79c723250 215 Gene3D G3DSA:3.20.20.70 1 215 5.6E-76 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44780 1105f333b3fa3e4b2051aac79c723250 215 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 203 7.4E-30 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 Gene3D G3DSA:3.40.50.1580 1 237 3.2E-76 T 11-10-2018 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.1E-120 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 51.76 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 SUPERFAMILY SSF53167 3 234 5.11E-93 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 Pfam PF01048 Phosphorylase superfamily 15 220 1.8E-39 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c23970 0b7e64ad5c8f6d6630ba8921306e41ca 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 403 48.48 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 Gene3D G3DSA:2.160.10.10 287 403 1.6E-32 T 11-10-2018 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 SUPERFAMILY SSF53448 4 358 5.16E-70 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 Gene3D G3DSA:3.90.550.10 2 286 3.1E-83 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 193 203 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 4 377 2.4E-153 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 95 103 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 Pfam PF00483 Nucleotidyl transferase 6 273 1.3E-63 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VV93_v1c20230 ab1e3f0d4ac5ba72ce40ca118f59a77e 405 SUPERFAMILY SSF51161 293 403 3.68E-14 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 524 2.2E-250 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 SUPERFAMILY SSF52029 185 376 4.36E-80 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 SUPERFAMILY SSF48592 7 521 7.41E-77 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.6E-98 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 SUPERFAMILY SSF54849 137 203 1.37E-24 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 PRINTS PR00298 60kDa chaperonin signature 27 53 2.8E-72 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 PRINTS PR00298 60kDa chaperonin signature 350 375 2.8E-72 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 PRINTS PR00298 60kDa chaperonin signature 83 110 2.8E-72 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 PRINTS PR00298 60kDa chaperonin signature 398 419 2.8E-72 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 PRINTS PR00298 60kDa chaperonin signature 268 291 2.8E-72 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 Gene3D G3DSA:3.50.7.10 192 372 1.9E-237 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 Gene3D G3DSA:1.10.560.10 8 521 1.9E-237 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 Hamap MF_00600 60 kDa chaperonin [groL]. 2 532 39.826 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 VV93_v1c45210 0e0e34d515c29d0d9717f04772a86cdf 532 Gene3D G3DSA:3.30.260.10 136 410 1.9E-237 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 538 556 4.9E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 614 4.9E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 567 585 4.9E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 496 514 4.9E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 59 1.0E-10 T 11-10-2018 IPR004176 Clp, N-terminal VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SUPERFAMILY SSF52540 442 749 1.39E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Gene3D G3DSA:1.10.8.60 658 758 4.0E-31 T 11-10-2018 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 523 541 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 216 332 6.9E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Gene3D G3DSA:3.40.50.300 161 355 4.1E-62 T 11-10-2018 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Gene3D G3DSA:1.10.1780.10 1 143 5.1E-41 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SUPERFAMILY SSF52540 172 431 1.32E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SUPERFAMILY SSF81923 1 142 1.7E-58 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Gene3D G3DSA:1.10.8.60 356 443 1.3E-34 T 11-10-2018 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 658 738 1.5E-23 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Gene3D G3DSA:3.40.50.300 444 657 5.6E-76 T 11-10-2018 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 739 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SMART SM01086 658 747 1.8E-36 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SMART SM00382 492 659 1.3E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 SMART SM00382 211 356 1.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 491 652 1.7E-47 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c20320 ea653cbb8f94b1d07de5c7f63fae1e2a 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 307 319 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 VV93_v1c10900 ad39936d51f18394c9b30cce865234ae 478 Pfam PF03553 Na+/H+ antiporter family 161 453 9.7E-66 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VV93_v1c10900 ad39936d51f18394c9b30cce865234ae 478 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 7 457 2.3E-162 T 11-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SUPERFAMILY SSF48452 169 357 2.19E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SMART SM00028 248 281 54.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SMART SM00028 328 361 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SMART SM00028 168 201 45.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SMART SM00028 82 115 11.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 SMART SM00028 288 321 0.13 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 Pfam PF13424 Tetratricopeptide repeat 248 311 2.0E-7 T 11-10-2018 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 Gene3D G3DSA:1.25.40.10 232 447 1.4E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c08230 bf9f7f394362ecd982de1ed8334f8249 754 Gene3D G3DSA:1.25.40.10 58 231 3.3E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 ProSitePatterns PS00638 P-II protein C-terminal region signature. 103 116 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 SMART SM00938 24 125 2.7E-68 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 PIRSF PIRSF039144 21 132 3.4E-55 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 SUPERFAMILY SSF54913 21 132 5.4E-45 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 ProSitePatterns PS00496 P-II protein uridylation site. 66 71 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 PRINTS PR00340 P-II protein signature 43 61 1.4E-40 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 PRINTS PR00340 P-II protein signature 72 95 1.4E-40 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 PRINTS PR00340 P-II protein signature 22 37 1.4E-40 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 PRINTS PR00340 P-II protein signature 103 123 1.4E-40 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 Gene3D G3DSA:3.30.70.120 13 132 1.7E-47 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VV93_v1c24610 7f7e6bf888e60245b88f5d88b96a75c9 132 Pfam PF00543 Nitrogen regulatory protein P-II 24 125 2.0E-43 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 Gene3D G3DSA:1.10.10.10 1 89 1.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 Pfam PF03466 LysR substrate binding domain 83 286 4.9E-30 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 58 1.3E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 35 2.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 14 25 2.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 2.6E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 Gene3D G3DSA:3.40.190.10 90 275 1.0E-38 T 11-10-2018 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 SUPERFAMILY SSF46785 2 80 2.45E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 Gene3D G3DSA:3.40.190.10 161 263 1.0E-38 T 11-10-2018 VV93_v1c31900 8586b68b3637fd927a6bfc0fb30b6135 290 SUPERFAMILY SSF53850 85 288 9.41E-29 T 11-10-2018 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Pfam PF00005 ABC transporter 330 483 1.6E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Gene3D G3DSA:3.40.50.300 1 287 2.5E-86 T 11-10-2018 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Gene3D G3DSA:3.40.50.300 301 571 1.8E-86 T 11-10-2018 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 ProSitePatterns PS00211 ABC transporters family signature. 455 469 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Pfam PF00005 ABC transporter 24 181 9.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 SUPERFAMILY SSF52540 3 253 6.32E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 534 565 0.0013 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 271 1.9E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 SMART SM00382 338 534 5.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 SMART SM00382 32 231 8.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c00380 c1273470faf1366e070523be4ca36f3e 571 SUPERFAMILY SSF52540 304 553 2.24E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Gene3D G3DSA:1.20.58.100 431 547 1.6E-38 T 11-10-2018 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Gene3D G3DSA:3.50.50.60 9 416 2.5E-169 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 1.5E-274 T 11-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 SUPERFAMILY SSF46977 451 588 1.96E-46 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Gene3D G3DSA:3.90.700.10 246 350 2.5E-169 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 SUPERFAMILY SSF56425 236 356 2.69E-42 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 1.5E-36 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 5.0E-240 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Pfam PF00890 FAD binding domain 9 405 6.9E-118 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 SUPERFAMILY SSF51905 5 440 1.76E-71 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 Gene3D G3DSA:4.10.80.40 548 588 2.4E-23 T 11-10-2018 VV93_v1c09530 95d817a6f98a8de701cd265c811c29ed 588 PIRSF PIRSF000171 1 580 4.9E-49 T 11-10-2018 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 Gene3D G3DSA:3.40.800.10 95 399 4.7E-65 T 11-10-2018 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 PRINTS PR00116 Arginase signature 198 213 2.1E-21 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 PRINTS PR00116 Arginase signature 226 253 2.1E-21 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 PRINTS PR00116 Arginase signature 276 294 2.1E-21 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 PRINTS PR00116 Arginase signature 325 354 2.1E-21 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 9.3E-5 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 SUPERFAMILY SSF52768 136 400 3.06E-59 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 Pfam PF00491 Arginase family 135 396 1.9E-54 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 PIRSF PIRSF036979 76 398 2.1E-32 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 SUPERFAMILY SSF54909 2 82 1.65E-14 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c37410 1cf87cf1f25c8c5ad9f2f83249e97604 402 Gene3D G3DSA:3.30.70.100 1 89 4.4E-11 T 11-10-2018 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 162 173 4.7E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 59 70 4.7E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 106 116 4.7E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 356 364 4.7E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 Gene3D G3DSA:2.40.160.10 26 360 7.8E-37 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 Pfam PF13609 Gram-negative porin 11 327 3.3E-32 T 11-10-2018 VV93_v1c08760 f1e8256c6132b6cd22e9178247c619fd 364 SUPERFAMILY SSF56935 32 364 7.94E-39 T 11-10-2018 VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 Gene3D G3DSA:1.20.1640.10 98 290 3.2E-10 T 11-10-2018 VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 2 288 22.605 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 35 276 1.1E-63 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 Pfam PF07549 SecD/SecF GG Motif 29 53 5.7E-7 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 107 274 1.6E-48 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 Pfam PF02355 Protein export membrane protein 101 284 1.4E-54 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 SUPERFAMILY SSF82866 112 284 5.1E-35 T 11-10-2018 VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 PRINTS PR01755 Bacterial translocase SecF protein signature 145 159 7.5E-24 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 PRINTS PR01755 Bacterial translocase SecF protein signature 193 211 7.5E-24 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 PRINTS PR01755 Bacterial translocase SecF protein signature 225 240 7.5E-24 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c41380 f518ed48a478497e7fb0619026a2f507 300 PRINTS PR01755 Bacterial translocase SecF protein signature 34 49 7.5E-24 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 SMART SM00347 24 124 3.2E-21 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 3.9E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 3.9E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 3.9E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 3.9E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 Pfam PF01047 MarR family 32 88 7.4E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 SUPERFAMILY SSF46785 6 136 7.01E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c40930 994c9bc41b94d9b1304f993a15da4d1b 138 Gene3D G3DSA:1.10.10.10 1 138 9.9E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Pfam PF13426 PAS domain 140 239 3.1E-8 T 11-10-2018 IPR000014 PAS domain VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 SUPERFAMILY SSF55785 126 238 8.2E-18 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 SUPERFAMILY SSF54631 687 817 3.16E-12 T 11-10-2018 VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Gene3D G3DSA:3.30.450.20 121 239 1.7E-19 T 11-10-2018 VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Gene3D G3DSA:3.30.70.270 252 407 5.9E-6 T 11-10-2018 VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 SMART SM00052 416 663 4.7E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Gene3D G3DSA:3.10.580.10 684 819 1.0E-9 T 11-10-2018 VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 SMART SM00091 129 195 1.8E-7 T 11-10-2018 IPR000014 PAS domain VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 SUPERFAMILY SSF141868 422 662 1.26E-64 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Gene3D G3DSA:3.20.20.450 408 665 3.8E-68 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 Pfam PF00563 EAL domain 426 658 2.3E-59 T 11-10-2018 IPR001633 EAL domain VV93_v1c19040 1872c714a4e84a0fdfdde7487ae1d519 820 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 241 3.1E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SMART SM00388 234 299 8.6E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SMART SM00448 589 702 3.0E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Pfam PF00072 Response regulator receiver domain 591 702 7.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Gene3D G3DSA:3.40.50.2300 586 706 9.1E-35 T 11-10-2018 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SUPERFAMILY SSF52172 588 705 5.55E-33 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SMART SM00387 346 461 3.7E-39 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 2.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 2.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 2.5E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 459 1.7E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SUPERFAMILY SSF47384 221 300 1.53E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Gene3D G3DSA:3.30.565.10 298 462 1.6E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Gene3D G3DSA:1.10.287.130 204 297 8.3E-24 T 11-10-2018 VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 SUPERFAMILY SSF55874 288 459 1.18E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c43250 0068a68efd7cacb8e397fda325b08726 716 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 299 8.5E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 Pfam PF00753 Metallo-beta-lactamase superfamily 15 165 2.2E-13 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 3 244 36.735 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 SUPERFAMILY SSF56281 11 244 4.33E-49 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 244 1.5E-18 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 9 244 4.0E-69 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 Gene3D G3DSA:3.60.15.10 1 244 2.1E-67 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c01410 b668fdf0a9a542f6c7b08f611d62576c 247 SMART SM00849 13 165 2.3E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 Pfam PF00753 Metallo-beta-lactamase superfamily 15 165 2.2E-13 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 3 244 36.735 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 SUPERFAMILY SSF56281 11 244 4.33E-49 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 244 1.5E-18 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 9 244 4.0E-69 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 Gene3D G3DSA:3.60.15.10 1 244 2.1E-67 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c34970 b668fdf0a9a542f6c7b08f611d62576c 247 SMART SM00849 13 165 2.3E-20 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 SMART SM00478 37 188 8.8E-46 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Gene3D G3DSA:1.10.1670.10 7 209 1.9E-87 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 166 3.2E-21 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 190 206 6.7E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 SUPERFAMILY SSF55811 218 345 2.43E-26 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 SMART SM00525 189 209 1.5E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Gene3D G3DSA:1.10.340.30 19 130 1.9E-87 T 11-10-2018 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Gene3D G3DSA:3.90.79.10 220 348 4.1E-14 T 11-10-2018 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 4 269 3.2E-125 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 Pfam PF14815 NUDIX domain 232 343 7.1E-23 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VV93_v1c25900 601af6f81923a5c7e9121aa856320da4 350 SUPERFAMILY SSF48150 3 223 9.89E-75 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c25370 f028a40c7add705a3467e67e88a709a1 243 SUPERFAMILY SSF63892 4 241 2.09E-101 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VV93_v1c25370 f028a40c7add705a3467e67e88a709a1 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 133.521 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VV93_v1c25370 f028a40c7add705a3467e67e88a709a1 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 238 2.3E-98 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VV93_v1c25370 f028a40c7add705a3467e67e88a709a1 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 1.7E-105 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 VV93_v1c25370 f028a40c7add705a3467e67e88a709a1 243 Gene3D G3DSA:3.20.20.70 1 243 8.9E-109 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 SUPERFAMILY SSF111369 109 252 1.57E-8 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Pfam PF13437 HlyD family secretion protein 200 272 2.0E-8 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 SUPERFAMILY SSF111369 38 96 6.41E-9 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Gene3D G3DSA:2.40.50.100 43 234 4.6E-40 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Gene3D G3DSA:1.10.287.470 77 199 4.6E-40 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Gene3D G3DSA:2.40.420.20 312 322 4.6E-40 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Gene3D G3DSA:2.40.30.170 35 311 4.6E-40 T 11-10-2018 VV93_v1c43860 e43543bdd4cccb17318579134ee6eb01 354 Pfam PF13533 Biotin-lipoyl like 44 88 7.2E-17 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Gene3D G3DSA:1.10.10.1800 459 550 3.9E-31 T 11-10-2018 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.461 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Gene3D G3DSA:3.50.50.60 1 231 3.4E-90 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Gene3D G3DSA:3.50.50.60 296 458 6.3E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 SUPERFAMILY SSF51905 6 261 5.52E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 621 1.8E-293 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Pfam PF01134 Glucose inhibited division protein A 8 399 9.6E-170 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Gene3D G3DSA:1.10.150.570 569 623 4.0E-23 T 11-10-2018 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 Pfam PF13932 GidA associated domain 403 616 6.8E-76 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 VV93_v1c29840 2b196c4b6d57247c4ab7354f81e24742 632 SMART SM01228 546 617 1.1E-43 T 11-10-2018 VV93_v1c31120 de4c97c0a905434e7cd760ef2e7b5167 161 SUPERFAMILY SSF54593 1 150 2.69E-26 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c31120 de4c97c0a905434e7cd760ef2e7b5167 161 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 VV93_v1c31120 de4c97c0a905434e7cd760ef2e7b5167 161 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 147 6.7E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c31120 de4c97c0a905434e7cd760ef2e7b5167 161 Gene3D G3DSA:3.10.180.10 1 159 1.3E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c44550 69a403492aabd8d3dc017f5577d513a9 294 Gene3D G3DSA:3.40.50.1820 11 277 2.9E-79 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c44550 69a403492aabd8d3dc017f5577d513a9 294 Gene3D G3DSA:1.10.10.800 139 224 2.9E-79 T 11-10-2018 VV93_v1c44550 69a403492aabd8d3dc017f5577d513a9 294 SUPERFAMILY SSF53474 6 293 1.42E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 Pfam PF00691 OmpA family 78 169 2.0E-14 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 SUPERFAMILY SSF103088 49 152 1.28E-15 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 PRINTS PR01021 OMPA domain signature 124 140 2.4E-8 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 PRINTS PR01021 OMPA domain signature 79 101 2.4E-8 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 PRINTS PR01021 OMPA domain signature 109 124 2.4E-8 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c33190 d60ebcae0e471357cd2e0da9be8d2887 204 Gene3D G3DSA:3.30.1330.60 55 174 1.1E-16 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 Gene3D G3DSA:3.30.420.40 8 323 1.4E-45 T 11-10-2018 VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 SUPERFAMILY SSF53067 46 165 7.12E-7 T 11-10-2018 VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 Gene3D G3DSA:3.30.1490.300 82 140 1.4E-45 T 11-10-2018 VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 5 325 1.9E-70 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 Pfam PF11104 Type IV pilus assembly protein PilM; 8 323 1.8E-48 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 Gene3D G3DSA:3.30.420.40 179 291 1.4E-45 T 11-10-2018 VV93_v1c27230 09abb848a7845d23630c84e0e55aab48 335 PIRSF PIRSF019169 1 327 5.2E-89 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM VV93_v1c33360 198bdbae1fc9e90874cbb21f7bb01e2b 127 PIRSF PIRSF028770 1 127 7.4E-73 T 11-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VV93_v1c33360 198bdbae1fc9e90874cbb21f7bb01e2b 127 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 3.9E-40 T 11-10-2018 IPR011223 Uncharacterised conserved protein UCP028770 VV93_v1c01550 a1b1d370ca04df72f82c342eda3394e5 227 Gene3D G3DSA:3.40.50.620 1 143 1.2E-17 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c01550 a1b1d370ca04df72f82c342eda3394e5 227 Pfam PF01902 Diphthamide synthase 4 211 1.3E-21 T 11-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 VV93_v1c01550 a1b1d370ca04df72f82c342eda3394e5 227 SUPERFAMILY SSF52402 1 216 8.13E-55 T 11-10-2018 VV93_v1c01550 a1b1d370ca04df72f82c342eda3394e5 227 Gene3D G3DSA:3.90.1490.10 144 226 3.6E-7 T 11-10-2018 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Gene3D G3DSA:3.40.190.10 37 282 3.3E-66 T 11-10-2018 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 SMART SM00062 43 287 3.9E-21 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 SUPERFAMILY SSF53955 265 468 6.91E-36 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 9 494 47.982 T 11-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 286 5.9E-28 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Pfam PF01464 Transglycosylase SLT domain 318 419 4.1E-21 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Gene3D G3DSA:1.10.530.10 308 469 2.1E-33 T 11-10-2018 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 328 356 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 Gene3D G3DSA:3.40.190.10 128 243 3.3E-66 T 11-10-2018 VV93_v1c07860 d57ec6d5647e84d133e2bd499e15361d 529 SUPERFAMILY SSF53850 44 286 6.0E-33 T 11-10-2018 VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 238 400 1.8E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 Pfam PF00563 EAL domain 420 655 2.4E-74 T 11-10-2018 IPR001633 EAL domain VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 SUPERFAMILY SSF55073 247 404 8.63E-48 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 SMART SM00267 231 402 2.6E-62 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 242 398 3.6E-46 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 SUPERFAMILY SSF141868 418 668 2.48E-89 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 Gene3D G3DSA:3.30.70.270 236 414 2.2E-58 T 11-10-2018 VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 SMART SM00052 412 660 7.2E-107 T 11-10-2018 IPR001633 EAL domain VV93_v1c24060 e1cb512dc7e22137d702acf3f3e0cbe7 687 Gene3D G3DSA:3.20.20.450 415 682 1.2E-96 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c36220 a4ad8f57e3f4bc4aa2635038ebd75d2d 251 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c36220 a4ad8f57e3f4bc4aa2635038ebd75d2d 251 Pfam PF00005 ABC transporter 20 164 3.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c36220 a4ad8f57e3f4bc4aa2635038ebd75d2d 251 SMART SM00382 26 213 9.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c36220 a4ad8f57e3f4bc4aa2635038ebd75d2d 251 Gene3D G3DSA:3.40.50.300 1 250 6.0E-65 T 11-10-2018 VV93_v1c36220 a4ad8f57e3f4bc4aa2635038ebd75d2d 251 SUPERFAMILY SSF52540 2 226 4.33E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30150 56aa75908834dc27c1d35948df0ef6e0 281 Pfam PF00005 ABC transporter 36 191 2.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c30150 56aa75908834dc27c1d35948df0ef6e0 281 Gene3D G3DSA:3.40.50.300 13 280 1.7E-83 T 11-10-2018 VV93_v1c30150 56aa75908834dc27c1d35948df0ef6e0 281 SUPERFAMILY SSF52540 15 263 2.78E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30150 56aa75908834dc27c1d35948df0ef6e0 281 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c30150 56aa75908834dc27c1d35948df0ef6e0 281 SMART SM00382 44 241 3.2E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c08850 b4af0037640de9605a3b3fc55c211548 248 Gene3D G3DSA:2.30.30.760 188 248 9.3E-12 T 11-10-2018 VV93_v1c08850 b4af0037640de9605a3b3fc55c211548 248 SMART SM00858 126 188 6.3E-8 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VV93_v1c08850 b4af0037640de9605a3b3fc55c211548 248 Pfam PF13144 Chaperone for flagella basal body P-ring formation 49 246 1.8E-47 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VV93_v1c08850 b4af0037640de9605a3b3fc55c211548 248 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 114 246 6.5E-38 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal VV93_v1c31450 3fa2bd709bcbc982c6e7fe9e95f9f9d0 446 Pfam PF01554 MatE 19 179 2.1E-25 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c31450 3fa2bd709bcbc982c6e7fe9e95f9f9d0 446 Pfam PF01554 MatE 247 404 1.2E-21 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c31450 3fa2bd709bcbc982c6e7fe9e95f9f9d0 446 TIGRFAM TIGR00797 matE: MATE efflux family protein 19 417 9.1E-58 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c31450 3fa2bd709bcbc982c6e7fe9e95f9f9d0 446 PIRSF PIRSF006603 2 446 9.0E-65 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c08170 61d367a5a06c0a57c4f0b954ba07512c 132 Pfam PF04241 Protein of unknown function (DUF423) 20 110 1.1E-29 T 11-10-2018 IPR006696 Protein of unknown function DUF423 VV93_v1c21470 249109903d4eb99cc0003b9ede6de660 440 Gene3D G3DSA:2.40.160.60 27 440 3.5E-118 T 11-10-2018 VV93_v1c21470 249109903d4eb99cc0003b9ede6de660 440 SUPERFAMILY SSF56935 27 440 1.42E-91 T 11-10-2018 VV93_v1c21470 249109903d4eb99cc0003b9ede6de660 440 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 18 440 5.9E-123 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c41220 cbd89deab0560ffcf9ab5c7658d0530d 44 Pfam PF09574 Protein of unknown function (Duf2374) 1 42 2.3E-26 T 11-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VV93_v1c41220 cbd89deab0560ffcf9ab5c7658d0530d 44 TIGRFAM TIGR02808 short_TIGR02808: TIGR02808 family protein 1 42 4.6E-26 T 11-10-2018 IPR014175 Conserved hypothetical protein CHP02808 VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 SUPERFAMILY SSF50129 5 144 2.05E-42 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 Pfam PF16884 N-terminal domain of oxidoreductase 7 113 2.1E-41 T 11-10-2018 VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 SUPERFAMILY SSF51735 124 304 3.26E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 Gene3D G3DSA:3.90.180.10 17 337 1.7E-131 T 11-10-2018 VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 Gene3D G3DSA:3.40.50.720 128 309 1.7E-131 T 11-10-2018 VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 SMART SM00829 20 337 1.7E-5 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VV93_v1c40000 4aec449c15d383ef0ed5fbe2b7303a80 343 Pfam PF00107 Zinc-binding dehydrogenase 159 287 3.8E-22 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VV93_v1c34110 e8d43d4f8ccb62a1b9c32357fd37db34 457 Gene3D G3DSA:3.80.30.20 28 364 2.0E-73 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c34110 e8d43d4f8ccb62a1b9c32357fd37db34 457 Pfam PF04055 Radical SAM superfamily 67 233 1.1E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c34110 e8d43d4f8ccb62a1b9c32357fd37db34 457 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 23 442 1.4E-180 T 11-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW VV93_v1c34110 e8d43d4f8ccb62a1b9c32357fd37db34 457 SMART SM00729 62 285 1.5E-37 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c34110 e8d43d4f8ccb62a1b9c32357fd37db34 457 SUPERFAMILY SSF102114 59 439 3.85E-82 T 11-10-2018 VV93_v1c36690 0044c8a19ccfba8a6a90e2cd5cde503a 446 Pfam PF13584 Oxygen tolerance 69 299 4.1E-25 T 11-10-2018 IPR025738 Aerotolerance-related protein BatD VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Pfam PF03717 Penicillin-binding Protein dimerisation domain 71 224 1.4E-19 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 22 574 45.209 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 SUPERFAMILY SSF56601 239 570 2.65E-93 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Gene3D G3DSA:3.30.450.330 239 563 1.1E-106 T 11-10-2018 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Pfam PF00905 Penicillin binding protein transpeptidase domain 263 559 8.3E-80 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Gene3D G3DSA:3.40.710.10 299 481 1.1E-106 T 11-10-2018 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 SUPERFAMILY SSF56519 65 237 4.58E-46 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 VV93_v1c05510 bfefd2a3ea113a50cdd61ff317cda27b 576 Gene3D G3DSA:3.90.1310.30 62 237 5.0E-45 T 11-10-2018 VV93_v1c01670 3fc4ea37d1e1915b69d36fc2fdb763b6 78 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 49 9.4E-23 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VV93_v1c01670 3fc4ea37d1e1915b69d36fc2fdb763b6 78 Pfam PF02416 mttA/Hcf106 family 4 61 1.1E-14 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VV93_v1c01670 3fc4ea37d1e1915b69d36fc2fdb763b6 78 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 74 25.967 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 253 285 4.8E-13 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 343 1.5E-179 T 11-10-2018 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 SUPERFAMILY SSF51161 90 323 7.21E-35 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Gene3D G3DSA:2.160.10.10 172 343 5.0E-70 T 11-10-2018 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Gene3D G3DSA:3.30.70.2010 1 130 3.3E-38 T 11-10-2018 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Gene3D G3DSA:3.30.60.70 131 171 1.9E-20 T 11-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 340 46.069 T 11-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 VV93_v1c23360 fce9de884cb27090c3e76ca93ed7c410 343 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 131 171 1.7E-16 T 11-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 VV93_v1c04150 b75ce06394affe2f39a71a000e14285b 95 Gene3D G3DSA:3.30.160.100 1 95 3.6E-38 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like VV93_v1c04150 b75ce06394affe2f39a71a000e14285b 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 3.4E-28 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VV93_v1c04150 b75ce06394affe2f39a71a000e14285b 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 5.2E-33 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 VV93_v1c04150 b75ce06394affe2f39a71a000e14285b 95 SUPERFAMILY SSF69754 1 95 1.29E-34 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 Pfam PF03466 LysR substrate binding domain 111 285 4.6E-15 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 SUPERFAMILY SSF53850 96 289 3.26E-23 T 11-10-2018 VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 Gene3D G3DSA:1.10.10.10 1 87 1.1E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 SUPERFAMILY SSF46785 1 85 1.77E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c39540 522640f57c5e144b83a1b2f8b81cc598 292 Gene3D G3DSA:3.40.190.290 92 284 8.4E-35 T 11-10-2018 VV93_v1c25110 460d1d8cbc8fbc83b90b9d3e8c22e0c8 85 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 85 36.329 T 11-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 VV93_v1c25110 460d1d8cbc8fbc83b90b9d3e8c22e0c8 85 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 10 80 1.5E-20 T 11-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 VV93_v1c25110 460d1d8cbc8fbc83b90b9d3e8c22e0c8 85 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 5 81 1.6E-21 T 11-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 VV93_v1c04360 9ced80e30a82d008d64d03985b21464f 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site VV93_v1c04360 9ced80e30a82d008d64d03985b21464f 323 SUPERFAMILY SSF48576 4 322 5.6E-101 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily VV93_v1c04360 9ced80e30a82d008d64d03985b21464f 323 Pfam PF00348 Polyprenyl synthetase 32 268 6.1E-75 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 VV93_v1c04360 9ced80e30a82d008d64d03985b21464f 323 Gene3D G3DSA:1.10.600.10 1 323 1.3E-121 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily VV93_v1c04360 9ced80e30a82d008d64d03985b21464f 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 SUPERFAMILY SSF46548 2 155 4.18E-36 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 PRINTS PR00419 Adrenodoxin reductase family signature 169 182 1.1E-23 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 PRINTS PR00419 Adrenodoxin reductase family signature 146 168 1.1E-23 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 PRINTS PR00419 Adrenodoxin reductase family signature 211 221 1.1E-23 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 1.1E-23 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Gene3D G3DSA:3.40.50.720 144 250 1.3E-14 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Gene3D G3DSA:3.50.50.60 411 476 1.4E-6 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 478 1.1E-198 T 11-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Gene3D G3DSA:1.10.1060.10 9 143 2.9E-24 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 145 459 4.3E-28 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 SUPERFAMILY SSF51971 143 407 1.88E-66 T 11-10-2018 VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Gene3D G3DSA:3.50.50.60 251 406 1.5E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c05790 e43decdb6b913e4fcb9aa0bd3e3529c1 489 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 38 131 2.7E-24 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 Pfam PF02609 Exonuclease VII small subunit 11 61 7.5E-19 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 Gene3D G3DSA:1.10.287.1040 4 77 1.3E-22 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 9.0E-22 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 47 3.0E-20 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.346 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 PIRSF PIRSF006488 1 77 1.3E-21 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c08090 de2b79ed26cf3eb87de5bd2f0b015b1b 80 SUPERFAMILY SSF116842 2 72 4.71E-21 T 11-10-2018 VV93_v1c25520 1ce75f08fdda6c370aef818311248dcc 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 8.0E-31 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 VV93_v1c25520 1ce75f08fdda6c370aef818311248dcc 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 3.7E-29 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 VV93_v1c25520 1ce75f08fdda6c370aef818311248dcc 68 Gene3D G3DSA:3.30.1910.10 1 63 1.9E-30 T 11-10-2018 VV93_v1c08100 03fe7394b625bb55505f5f5914148b96 253 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 213 1.2E-21 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c08100 03fe7394b625bb55505f5f5914148b96 253 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site VV93_v1c40890 d13e8153ee25276630ce1f92da382ea1 339 SUPERFAMILY SSF56281 75 302 8.63E-35 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c40890 d13e8153ee25276630ce1f92da382ea1 339 Pfam PF12706 Beta-lactamase superfamily domain 91 284 4.1E-41 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c40890 d13e8153ee25276630ce1f92da382ea1 339 PIRSF PIRSF038896 9 327 1.7E-91 T 11-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 VV93_v1c40890 d13e8153ee25276630ce1f92da382ea1 339 Gene3D G3DSA:3.60.15.10 51 331 2.4E-79 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c41290 26af64ea11d96eb747c00157958ec24b 321 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 28 308 4.2E-93 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 VV93_v1c41290 26af64ea11d96eb747c00157958ec24b 321 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 29 284 5.0E-77 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c41290 26af64ea11d96eb747c00157958ec24b 321 Gene3D G3DSA:3.40.190.170 23 321 4.4E-117 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily VV93_v1c41290 26af64ea11d96eb747c00157958ec24b 321 PIRSF PIRSF006470 1 321 3.0E-77 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 SUPERFAMILY SSF161098 25 279 6.54E-43 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 SUPERFAMILY SSF161098 303 553 6.67E-31 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 27 569 6.8E-258 T 11-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 282 2.5E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 388 558 8.0E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 Gene3D G3DSA:1.10.3720.10 305 559 1.3E-27 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c34600 f4419acf0c4738beae02d8d5048ea4cb 569 Gene3D G3DSA:1.10.3720.10 23 286 8.3E-49 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 SUPERFAMILY SSF53223 4 267 1.01E-109 T 11-10-2018 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 ProSitePatterns PS00331 Malic enzymes signature. 264 280 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 SMART SM00919 268 528 5.6E-132 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 1 562 73.372 T 11-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 144 173 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 180 202 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 295 311 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 239 257 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 84 108 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 264 280 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PRINTS PR00072 Malic enzyme signature 405 421 5.3E-72 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 PIRSF PIRSF000106 2 560 1.1E-224 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 Gene3D G3DSA:3.40.50.720 266 562 3.6E-109 T 11-10-2018 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 SMART SM01274 78 258 1.3E-107 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 Pfam PF03949 Malic enzyme, NAD binding domain 268 528 1.0E-102 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 Gene3D G3DSA:3.40.50.10380 13 265 1.9E-114 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 SUPERFAMILY SSF51735 268 559 3.36E-95 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c13730 b1fe28cb498b06b726c6f927f70895ae 562 Pfam PF00390 Malic enzyme, N-terminal domain 78 258 2.9E-78 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 VV93_v1c29580 26e149818aaa382554ba22165dd437af 201 PIRSF PIRSF001488 1 201 2.2E-70 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VV93_v1c29580 26e149818aaa382554ba22165dd437af 201 SUPERFAMILY SSF52833 22 199 9.13E-46 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c29580 26e149818aaa382554ba22165dd437af 201 Gene3D G3DSA:3.40.30.10 18 200 6.6E-54 T 11-10-2018 VV93_v1c29580 26e149818aaa382554ba22165dd437af 201 Pfam PF01323 DSBA-like thioredoxin domain 42 189 2.6E-29 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 VV93_v1c29580 26e149818aaa382554ba22165dd437af 201 ProSitePatterns PS00194 Thioredoxin family active site. 42 60 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 SUPERFAMILY SSF142754 29 341 5.23E-106 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 Gene3D G3DSA:3.40.50.10800 200 295 5.2E-94 T 11-10-2018 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 Gene3D G3DSA:3.40.50.10800 32 322 5.2E-94 T 11-10-2018 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 Pfam PF02445 Quinolinate synthetase A protein 32 340 6.9E-102 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 2.2E-114 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 Gene3D G3DSA:3.40.50.10800 115 340 5.2E-94 T 11-10-2018 VV93_v1c19820 6d79dcb940b7764a06e4b7f0d81f4223 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 66.784 T 11-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 Gene3D G3DSA:3.40.50.300 1 244 1.3E-77 T 11-10-2018 VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 Pfam PF00005 ABC transporter 17 168 5.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 PIRSF PIRSF039085 1 244 5.5E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 SUPERFAMILY SSF52540 1 238 7.45E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 SMART SM00382 26 216 4.5E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c30090 2761308d1823e155e0b12538d59559ac 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c18200 ae8758681f8645a398314df1430f937b 288 Gene3D G3DSA:3.40.1090.10 91 225 3.3E-8 T 11-10-2018 VV93_v1c18200 ae8758681f8645a398314df1430f937b 288 Gene3D G3DSA:3.40.1090.10 1 90 6.4E-9 T 11-10-2018 VV93_v1c18200 ae8758681f8645a398314df1430f937b 288 SUPERFAMILY SSF52151 3 260 7.85E-32 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VV93_v1c18200 ae8758681f8645a398314df1430f937b 288 Pfam PF01734 Patatin-like phospholipase 4 168 2.7E-14 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 Pfam PF13176 Tetratricopeptide repeat 240 263 0.029 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 SUPERFAMILY SSF48452 34 286 6.88E-69 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 Gene3D G3DSA:1.25.40.10 25 296 9.4E-80 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 SMART SM00028 237 270 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 SMART SM00028 100 133 0.0011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 SMART SM00028 66 99 0.057 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c24160 8b95427bc93ebcd2b294565f37f9ca53 302 PIRSF PIRSF004654 1 295 1.0E-87 T 11-10-2018 IPR023605 Lipoprotein NlpI VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 170 314 1.5E-24 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 SMART SM00283 95 363 6.5E-5 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 222 251 1.0E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 193 220 1.0E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 Gene3D G3DSA:1.10.287.950 85 371 4.9E-34 T 11-10-2018 VV93_v1c45420 e3fbcb07ed02e31a621894a34f175e2e 390 SUPERFAMILY SSF58104 101 344 6.41E-37 T 11-10-2018 VV93_v1c15120 f2d69bc0477678035a27d1f1a847b837 350 Gene3D G3DSA:3.20.20.70 1 350 1.2E-151 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c15120 f2d69bc0477678035a27d1f1a847b837 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 5.3E-160 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c15120 f2d69bc0477678035a27d1f1a847b837 350 Pfam PF00793 DAHP synthetase I family 42 338 6.6E-100 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c15120 f2d69bc0477678035a27d1f1a847b837 350 SUPERFAMILY SSF51569 8 347 1.17E-129 T 11-10-2018 VV93_v1c15120 f2d69bc0477678035a27d1f1a847b837 350 PIRSF PIRSF001361 2 350 1.4E-155 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 2 365 5.2E-202 T 11-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 Pfam PF00266 Aminotransferase class-V 36 313 4.5E-30 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 367 213.505 T 11-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 SUPERFAMILY SSF53383 3 362 5.68E-88 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 Gene3D G3DSA:3.40.640.10 16 262 6.4E-122 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 6 362 3.4E-170 T 11-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 PIRSF PIRSF000524 1 365 2.8E-56 T 11-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 VV93_v1c34570 5e0b746029dbcfe6119e29669098e41e 367 Gene3D G3DSA:3.90.1150.10 8 353 6.4E-122 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c07900 79202ac11e3c0feaffcd04c755803f87 352 SUPERFAMILY SSF53187 20 318 4.3E-76 T 11-10-2018 VV93_v1c07900 79202ac11e3c0feaffcd04c755803f87 352 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 50 317 7.6E-72 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c07900 79202ac11e3c0feaffcd04c755803f87 352 PIRSF PIRSF039012 4 325 1.3E-90 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c07900 79202ac11e3c0feaffcd04c755803f87 352 Gene3D G3DSA:3.40.630.10 16 320 1.4E-91 T 11-10-2018 VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 SUPERFAMILY SSF51735 3 224 4.62E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 4.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 Pfam PF00106 short chain dehydrogenase 3 189 2.1E-53 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 Gene3D G3DSA:3.40.50.720 1 239 2.1E-78 T 11-10-2018 VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32400 c0fe6670ddbab942e8a8a6ca090a62ea 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.1E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c42560 2ef27748e1eedcb31d0d7618b18ac833 215 Gene3D G3DSA:1.20.1050.10 82 187 1.4E-37 T 11-10-2018 VV93_v1c42560 2ef27748e1eedcb31d0d7618b18ac833 215 SUPERFAMILY SSF47616 83 197 3.23E-11 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c42560 2ef27748e1eedcb31d0d7618b18ac833 215 Pfam PF13409 Glutathione S-transferase, N-terminal domain 11 75 2.0E-7 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c42560 2ef27748e1eedcb31d0d7618b18ac833 215 Gene3D G3DSA:3.40.30.10 1 76 6.7E-13 T 11-10-2018 VV93_v1c42560 2ef27748e1eedcb31d0d7618b18ac833 215 SUPERFAMILY SSF52833 4 84 5.61E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 ProSitePatterns PS00893 Nudix box signature. 164 185 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 Pfam PF00293 NUDIX domain 137 236 9.1E-19 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 99 129 2.3E-10 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 SUPERFAMILY SSF55811 62 248 3.93E-45 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 PRINTS PR00502 NUDIX hydrolase family signature 159 173 3.0E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 PRINTS PR00502 NUDIX hydrolase family signature 173 188 3.0E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 Gene3D G3DSA:3.90.79.20 3 130 1.7E-32 T 11-10-2018 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 Hamap MF_00297 NADH pyrophosphatase [nudC]. 3 260 41.853 T 11-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 VV93_v1c28730 08bc099815f4fa8b2ecd16c8df1f6758 261 Gene3D G3DSA:3.90.79.10 131 260 1.3E-40 T 11-10-2018 VV93_v1c18640 07215eb6c86082254e1bf70a143f0133 210 SUPERFAMILY SSF56925 55 181 2.09E-10 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c18640 07215eb6c86082254e1bf70a143f0133 210 Gene3D G3DSA:2.40.160.20 37 192 4.9E-7 T 11-10-2018 VV93_v1c16880 ccf66f326808799e1a3719d57ef9a174 110 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 4 105 3.2E-10 T 11-10-2018 IPR009387 Toxin HigB-2 VV93_v1c16880 ccf66f326808799e1a3719d57ef9a174 110 PIRSF PIRSF039032 1 110 2.1E-45 T 11-10-2018 IPR009387 Toxin HigB-2 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SUPERFAMILY SSF55021 689 762 8.33E-8 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 Pfam PF08335 GlnD PII-uridylyltransferase 176 314 2.8E-35 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SUPERFAMILY SSF109604 416 593 5.34E-15 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 Pfam PF01909 Nucleotidyltransferase domain 69 124 6.5E-7 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SUPERFAMILY SSF81301 33 172 2.73E-19 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 Gene3D G3DSA:1.10.3210.10 435 591 7.9E-10 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 Pfam PF01966 HD domain 452 584 7.1E-14 T 11-10-2018 IPR006674 HD domain VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 29 868 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SUPERFAMILY SSF55021 796 854 4.16E-7 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SUPERFAMILY SSF81593 187 310 5.1E-9 T 11-10-2018 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 PIRSF PIRSF006288 6 873 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 873 335.657 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 VV93_v1c22780 ac2ff5edbe18916f936e18afce9a5734 873 SMART SM00471 447 594 1.8E-10 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 877 5.8E-287 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 535 547 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 SUPERFAMILY SSF51621 6 877 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 Gene3D G3DSA:1.20.1440.90 273 387 5.6E-27 T 11-10-2018 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 877 17.922 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 384 404 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 533 553 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 575 604 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c27320 813c8f176dcf4d2fea282da9d65ed7e7 877 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 707 733 1.4E-66 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 SUPERFAMILY SSF46785 1 79 2.66E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 SUPERFAMILY SSF53850 88 290 8.28E-32 T 11-10-2018 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 Gene3D G3DSA:3.40.190.10 165 265 1.2E-28 T 11-10-2018 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 Pfam PF03466 LysR substrate binding domain 88 289 2.0E-34 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 Gene3D G3DSA:3.40.190.10 91 285 1.2E-28 T 11-10-2018 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c00300 b3f7411d9df3cc46cecf5bd59fdefc1c 296 Gene3D G3DSA:1.10.10.10 1 90 8.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12240 33329dadf550a7f853db342427083d8c 288 SUPERFAMILY SSF52540 6 257 1.1E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12240 33329dadf550a7f853db342427083d8c 288 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c12240 33329dadf550a7f853db342427083d8c 288 Gene3D G3DSA:3.40.50.300 4 284 2.5E-92 T 11-10-2018 VV93_v1c12240 33329dadf550a7f853db342427083d8c 288 Pfam PF00005 ABC transporter 26 186 1.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c12240 33329dadf550a7f853db342427083d8c 288 SMART SM00382 35 244 2.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21520 f5c95431b5309b3b120d69701a957a1a 184 ProSitePatterns PS00194 Thioredoxin family active site. 71 89 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c21520 f5c95431b5309b3b120d69701a957a1a 184 Pfam PF08534 Redoxin 41 164 1.1E-27 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VV93_v1c21520 f5c95431b5309b3b120d69701a957a1a 184 Gene3D G3DSA:3.40.30.10 19 184 4.2E-45 T 11-10-2018 VV93_v1c21520 f5c95431b5309b3b120d69701a957a1a 184 SUPERFAMILY SSF52833 46 178 5.0E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c21520 f5c95431b5309b3b120d69701a957a1a 184 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 177 2.6E-72 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 VV93_v1c33770 4a8b858436799a2d8792df96a13003cb 277 Pfam PF10364 Putative capsular polysaccharide synthesis protein 121 257 2.9E-60 T 11-10-2018 IPR018831 Uncharacterised protein family NKWYS VV93_v1c33770 4a8b858436799a2d8792df96a13003cb 277 SUPERFAMILY SSF52540 17 145 2.45E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 SMART SM00448 4 115 3.6E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 SUPERFAMILY SSF52172 3 173 5.55E-40 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 SUPERFAMILY SSF46689 342 462 6.27E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 215 230 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 342 351 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Gene3D G3DSA:3.40.50.2300 1 119 1.1E-33 T 11-10-2018 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 SUPERFAMILY SSF52540 135 370 4.83E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Pfam PF00158 Sigma-54 interaction domain 134 295 5.9E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Pfam PF00072 Response regulator receiver domain 6 115 1.3E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 SMART SM00382 149 296 2.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Gene3D G3DSA:1.10.10.60 402 467 1.5E-9 T 11-10-2018 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Gene3D G3DSA:1.10.8.60 301 379 4.1E-30 T 11-10-2018 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Gene3D G3DSA:3.40.50.300 120 300 2.0E-64 T 11-10-2018 VV93_v1c21860 dec762cf55b86d71af780a4ec6a6832b 471 Pfam PF02954 Bacterial regulatory protein, Fis family 422 461 3.4E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 Gene3D G3DSA:3.10.170.10 172 325 8.9E-36 T 11-10-2018 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 SUPERFAMILY SSF55486 172 481 9.71E-75 T 11-10-2018 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 173 322 2.2E-35 T 11-10-2018 IPR013856 Peptidase M4 domain GO:0004222 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 325 481 2.5E-40 T 11-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 277 297 5.6E-25 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 313 329 5.6E-25 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 398 414 5.6E-25 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 334 345 5.6E-25 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c35450 842a351e876922b800d5798f63d27fae 587 Gene3D G3DSA:1.10.390.10 327 481 2.4E-48 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 Pfam PF14743 DNA ligase OB-like domain 212 277 2.5E-26 T 11-10-2018 IPR029319 DNA ligase, OB-like domain VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 SUPERFAMILY SSF50249 173 277 2.23E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 Gene3D G3DSA:2.40.50.140 198 280 1.9E-8 T 11-10-2018 VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 SUPERFAMILY SSF56091 27 198 2.07E-38 T 11-10-2018 VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 Pfam PF01068 ATP dependent DNA ligase domain 41 198 2.8E-7 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 175 198 - T 11-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 Gene3D G3DSA:3.30.470.30 51 151 7.5E-54 T 11-10-2018 VV93_v1c15090 242f8ceb2d4ad6ff27c486242f57d357 280 Gene3D G3DSA:3.30.1490.70 31 190 7.5E-54 T 11-10-2018 VV93_v1c04020 6f26298a932231267a1c1afbcafc4b97 212 Gene3D G3DSA:3.40.50.1950 1 204 7.7E-77 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VV93_v1c04020 6f26298a932231267a1c1afbcafc4b97 212 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 6 203 34.806 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VV93_v1c04020 6f26298a932231267a1c1afbcafc4b97 212 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 8 201 2.3E-57 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like VV93_v1c04020 6f26298a932231267a1c1afbcafc4b97 212 SUPERFAMILY SSF52507 6 202 9.55E-57 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 VV93_v1c04020 6f26298a932231267a1c1afbcafc4b97 212 Pfam PF02441 Flavoprotein 6 182 1.1E-24 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 VV93_v1c04800 7c1e0c340e92bb013316eb57372fe50b 1122 SUPERFAMILY SSF52540 425 878 6.3E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04800 7c1e0c340e92bb013316eb57372fe50b 1122 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 1 984 4.7E-280 T 11-10-2018 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type VV93_v1c04800 7c1e0c340e92bb013316eb57372fe50b 1122 Gene3D G3DSA:1.10.3210.30 95 276 1.7E-11 T 11-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily VV93_v1c04800 7c1e0c340e92bb013316eb57372fe50b 1122 Pfam PF04851 Type III restriction enzyme, res subunit 401 493 5.7E-6 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c10350 9eee86f00f3b0506950e90673953e6b4 404 Pfam PF00155 Aminotransferase class I and II 61 391 1.3E-47 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c10350 9eee86f00f3b0506950e90673953e6b4 404 SUPERFAMILY SSF53383 5 400 7.93E-95 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c10350 9eee86f00f3b0506950e90673953e6b4 404 Gene3D G3DSA:3.90.1150.10 21 398 7.7E-145 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c10350 9eee86f00f3b0506950e90673953e6b4 404 Gene3D G3DSA:3.40.640.10 53 294 7.7E-145 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 Gene3D G3DSA:3.40.190.10 173 271 1.2E-21 T 11-10-2018 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 SUPERFAMILY SSF46785 7 89 3.1E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 SUPERFAMILY SSF53850 93 298 1.05E-21 T 11-10-2018 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 Pfam PF03466 LysR substrate binding domain 97 297 1.0E-12 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 Gene3D G3DSA:3.40.190.10 93 295 1.2E-21 T 11-10-2018 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 5.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 5.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 5.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 Gene3D G3DSA:1.10.10.10 2 91 8.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c06820 efdfdec1cd87313d7180c67cecf565e7 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 1.2E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Gene3D G3DSA:1.10.486.10 457 669 5.7E-191 T 11-10-2018 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Gene3D G3DSA:3.40.50.10930 4 321 3.3E-124 T 11-10-2018 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 2 814 1.0E-297 T 11-10-2018 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Gene3D G3DSA:3.40.50.300 339 815 5.7E-191 T 11-10-2018 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Gene3D G3DSA:1.10.10.990 883 961 1.9E-18 T 11-10-2018 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 PIRSF PIRSF000980 1 1160 0.0 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1154 20.716 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 SUPERFAMILY SSF52540 2 351 3.19E-122 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1121 0.0 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 SUPERFAMILY SSF52980 843 1140 4.5E-73 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 Gene3D G3DSA:1.10.10.160 79 187 3.3E-124 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily VV93_v1c23300 587437aa13e6c2c1f230f7c5854ec3c8 1162 SUPERFAMILY SSF52540 365 821 3.19E-101 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 192 8.8E-85 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 99 107 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 119 131 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 2 16 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 74 85 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 47 56 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00097 Anthranilate synthase component II signature 169 182 3.4E-36 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 9.8E-7 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 9.8E-7 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 91 108 9.8E-7 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 Gene3D G3DSA:3.40.50.880 1 192 5.1E-61 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 SUPERFAMILY SSF52317 1 191 1.75E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.2E-13 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.2E-13 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 4.2E-13 T 11-10-2018 VV93_v1c27830 b7b1e6c423c072cf5db24adca4cb8ffd 192 Pfam PF00117 Glutamine amidotransferase class-I 4 190 3.0E-54 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c40790 3d4a9eb99bbec26c10bcfe502c228a41 505 Pfam PF00474 Sodium:solute symporter family 34 416 9.4E-46 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c40790 3d4a9eb99bbec26c10bcfe502c228a41 505 Gene3D G3DSA:1.20.1730.10 8 484 6.0E-71 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c27560 296911a542d8594d3417f249a43a4767 62 Gene3D G3DSA:1.10.10.1100 1 57 1.2E-19 T 11-10-2018 VV93_v1c27560 296911a542d8594d3417f249a43a4767 62 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 1.1E-12 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 Pfam PF00089 Trypsin 32 311 4.7E-29 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 260 271 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 SUPERFAMILY SSF50494 32 315 4.09E-41 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 SMART SM00020 20 311 2.3E-29 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 Gene3D G3DSA:2.40.10.10 160 314 9.3E-24 T 11-10-2018 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 374 394 1.3E-4 T 11-10-2018 IPR020008 GlyGly-CTERM domain VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 58 63 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 Gene3D G3DSA:2.40.10.10 32 154 2.2E-19 T 11-10-2018 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 48 63 6.8E-15 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 132 146 6.8E-15 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c06900 8bee98a106303ad4fb2ebac88bd97a7b 396 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 259 271 6.8E-15 T 11-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 VV93_v1c40920 bdd90a5e17303ed666e1a02b4c119dc7 311 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 18 310 3.3E-66 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c40920 bdd90a5e17303ed666e1a02b4c119dc7 311 Pfam PF01545 Cation efflux family 22 238 5.4E-37 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c40920 bdd90a5e17303ed666e1a02b4c119dc7 311 Gene3D G3DSA:1.20.1510.10 18 238 3.8E-31 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c40920 bdd90a5e17303ed666e1a02b4c119dc7 311 SUPERFAMILY SSF161111 14 239 8.89E-53 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 Gene3D G3DSA:1.25.40.80 133 282 2.4E-70 T 11-10-2018 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 SUPERFAMILY SSF48173 191 467 2.35E-107 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 SUPERFAMILY SSF52425 2 187 1.31E-45 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 341 360 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 Pfam PF03441 FAD binding domain of DNA photolyase 271 463 5.0E-82 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 PRINTS PR00147 DNA photolyase signature 321 337 2.7E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 PRINTS PR00147 DNA photolyase signature 341 359 2.7E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 PRINTS PR00147 DNA photolyase signature 142 158 2.7E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 PRINTS PR00147 DNA photolyase signature 380 394 2.7E-29 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 Pfam PF00875 DNA photolyase 3 162 3.4E-43 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 321 333 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 Gene3D G3DSA:1.10.579.10 289 468 5.8E-81 T 11-10-2018 VV93_v1c33430 f281f06eb5a1f6ab3bcb4547ea486528 469 Gene3D G3DSA:3.40.50.620 3 202 2.4E-70 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c02190 d448ec97e4127565c1046002c0305c9e 228 SUPERFAMILY SSF75217 4 177 1.37E-48 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c02190 d448ec97e4127565c1046002c0305c9e 228 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 35.158 T 11-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 VV93_v1c02190 d448ec97e4127565c1046002c0305c9e 228 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 2.0E-23 T 11-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 VV93_v1c02190 d448ec97e4127565c1046002c0305c9e 228 Pfam PF00588 SpoU rRNA Methylase family 20 159 2.6E-35 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c02190 d448ec97e4127565c1046002c0305c9e 228 Gene3D G3DSA:3.40.1280.10 1 190 4.4E-61 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 PIRSF PIRSF004750 6 281 5.2E-131 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 TIGRFAM TIGR03138 QueF: queuine synthase 11 281 3.2E-129 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 Gene3D G3DSA:3.30.1130.10 143 281 2.3E-62 T 11-10-2018 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 Pfam PF14489 QueF-like protein 194 270 1.6E-27 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 Gene3D G3DSA:3.30.1130.10 21 138 3.4E-46 T 11-10-2018 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 129 2.2E-49 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 165.609 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 VV93_v1c08240 ce8afbb85ce7e232d541c8149c009a49 281 SUPERFAMILY SSF55620 184 267 2.37E-10 T 11-10-2018 VV93_v1c23610 b7e4592c1979702d589a3eb5680d4157 150 Gene3D G3DSA:2.60.120.370 1 143 5.4E-15 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily VV93_v1c23610 b7e4592c1979702d589a3eb5680d4157 150 SUPERFAMILY SSF51197 1 143 1.46E-24 T 11-10-2018 VV93_v1c23610 b7e4592c1979702d589a3eb5680d4157 150 Pfam PF04074 Domain of unknown function (DUF386) 3 140 9.7E-26 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 Gene3D G3DSA:1.10.357.10 2 208 1.8E-56 T 11-10-2018 VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 2.3E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 SUPERFAMILY SSF46689 3 77 4.41E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 SUPERFAMILY SSF48498 80 207 2.71E-41 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c13470 ebd5b7746f4717570985eac7c6c012dd 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 642 3.1E-258 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 Pfam PF01578 Cytochrome C assembly protein 89 297 2.2E-54 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 639 5.6E-126 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 3.4E-95 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 632 645 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21530 485be2fe06f01812fe948e807c06f13d 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 4.9E-63 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c28740 b484a7261f06eaec2bae20f63e9d762b 162 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 152 2.3E-54 T 11-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VV93_v1c28740 b484a7261f06eaec2bae20f63e9d762b 162 PIRSF PIRSF016548 1 162 6.1E-73 T 11-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 VV93_v1c28740 b484a7261f06eaec2bae20f63e9d762b 162 Gene3D G3DSA:1.20.120.1370 1 155 1.6E-50 T 11-10-2018 IPR038309 Rsd/AlgQ superfamily VV93_v1c06030 8451c1d4d8472a37fd3ef5a0489c9579 172 Pfam PF00258 Flavodoxin 5 160 3.9E-28 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VV93_v1c06030 8451c1d4d8472a37fd3ef5a0489c9579 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 169 1.9E-67 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VV93_v1c06030 8451c1d4d8472a37fd3ef5a0489c9579 172 PIRSF PIRSF038996 1 172 6.0E-58 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VV93_v1c06030 8451c1d4d8472a37fd3ef5a0489c9579 172 Gene3D G3DSA:3.40.50.360 1 172 1.1E-50 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c06030 8451c1d4d8472a37fd3ef5a0489c9579 172 SUPERFAMILY SSF52218 1 169 2.35E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c13030 b05843a5135654f783f49f9c0ada3a31 223 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 219 1.7E-95 T 11-10-2018 IPR014319 Phage shock protein, PspA VV93_v1c13030 b05843a5135654f783f49f9c0ada3a31 223 Pfam PF04012 PspA/IM30 family 2 217 6.7E-61 T 11-10-2018 IPR007157 PspA/IM30 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 283 2.9E-99 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 PIRSF PIRSF001359 1 284 3.7E-110 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 Gene3D G3DSA:3.20.20.70 1 284 4.1E-107 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 SUPERFAMILY SSF51569 3 283 5.86E-101 T 11-10-2018 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 2.4E-149 T 11-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 1.5E-101 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c44110 5731f1aec195a297d2c5adcc4414744f 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 1.5E-16 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 24.77 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 SUPERFAMILY SSF48300 4 58 1.31E-15 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 5.4E-30 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 93 2.0E-12 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.8E-46 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 Gene3D G3DSA:3.30.1390.10 52 122 2.4E-30 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 Gene3D G3DSA:1.20.5.710 2 51 4.8E-23 T 11-10-2018 VV93_v1c28770 37aa2bbd332b2b09ba2d51e4be4d9bd3 122 SUPERFAMILY SSF54736 51 122 2.09E-24 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VV93_v1c00600 fe042981e90361d9908da2261e3be159 680 Gene3D G3DSA:1.10.1370.40 13 675 2.6E-267 T 11-10-2018 VV93_v1c00600 fe042981e90361d9908da2261e3be159 680 Pfam PF01432 Peptidase family M3 222 677 5.2E-163 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 VV93_v1c00600 fe042981e90361d9908da2261e3be159 680 SUPERFAMILY SSF55486 1 677 2.08E-212 T 11-10-2018 VV93_v1c00600 fe042981e90361d9908da2261e3be159 680 Gene3D G3DSA:1.10.1370.10 140 610 2.6E-267 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 526 1036 3.7E-251 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 838 849 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 SUPERFAMILY SSF51730 190 532 5.89E-115 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 74 187 8.9E-46 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Gene3D G3DSA:3.40.309.10 813 1005 1.3E-149 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Pfam PF01619 Proline dehydrogenase 197 490 1.7E-93 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 SUPERFAMILY SSF81935 17 188 2.48E-64 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Gene3D G3DSA:3.20.20.220 147 525 1.8E-131 T 11-10-2018 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 SUPERFAMILY SSF53720 553 1037 5.76E-129 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Gene3D G3DSA:3.40.605.10 549 1036 1.3E-149 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 PIRSF PIRSF000197 3 1042 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 VV93_v1c45080 3fc18127cc56af9762636e1cd0860d89 1043 Pfam PF00171 Aldehyde dehydrogenase family 582 1036 9.1E-120 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 Gene3D G3DSA:3.90.110.10 147 310 6.8E-54 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 2.5E-47 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 SUPERFAMILY SSF51735 1 145 1.42E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 PIRSF PIRSF000102 1 306 1.8E-62 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 11-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 310 57.814 T 11-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 310 5.1E-130 T 11-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 SUPERFAMILY SSF56327 146 309 2.01E-41 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 Gene3D G3DSA:3.40.50.720 1 146 3.7E-66 T 11-10-2018 VV93_v1c04350 f1e882ad925374723e22b69eb5b30dad 310 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 309 3.5E-48 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 SUPERFAMILY SSF82689 252 351 9.68E-22 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 SUPERFAMILY SSF82861 100 179 2.09E-12 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 Gene3D G3DSA:3.30.70.100 249 346 2.7E-17 T 11-10-2018 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 SUPERFAMILY SSF50182 180 247 3.6E-18 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 212 246 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 Pfam PF00924 Mechanosensitive ion channel 138 342 9.7E-57 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c33220 11d6dc28c0faef2107410e98cbd081ce 367 Gene3D G3DSA:2.30.30.60 196 248 2.7E-10 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 Gene3D G3DSA:3.20.20.80 258 636 2.1E-135 T 11-10-2018 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 260 607 2.5E-120 T 11-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 217 237 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 283 304 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 589 606 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 254 271 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 353 370 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 571 587 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 402 420 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 PRINTS PR00738 Glycosyl hydrolase family 20 signature 424 437 3.7E-49 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 SUPERFAMILY SSF51445 260 620 1.26E-126 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 SUPERFAMILY SSF55545 125 259 1.64E-23 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 137 256 1.6E-14 T 11-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VV93_v1c24540 b39db41da1b95f5308102e777fe8dc39 639 Gene3D G3DSA:3.30.379.10 132 256 1.1E-18 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 VV93_v1c08880 e604e3563d82ea92be427f3806a1352a 131 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 129 2.6E-28 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VV93_v1c08880 e604e3563d82ea92be427f3806a1352a 131 PIRSF PIRSF002889 1 131 2.3E-32 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 Pfam PF03466 LysR substrate binding domain 88 289 7.9E-27 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c40740 43da60506e65e613780e105f112f6953 295 Gene3D G3DSA:3.40.190.10 92 287 1.2E-38 T 11-10-2018 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 Gene3D G3DSA:3.40.190.10 164 261 1.2E-38 T 11-10-2018 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 SUPERFAMILY SSF53850 89 292 5.25E-28 T 11-10-2018 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c40740 43da60506e65e613780e105f112f6953 295 SUPERFAMILY SSF46785 9 88 5.99E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c40740 43da60506e65e613780e105f112f6953 295 Gene3D G3DSA:1.10.10.10 4 89 2.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c40740 43da60506e65e613780e105f112f6953 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 62 2.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c20130 bde991715932420ebc8538b33535cec7 286 Gene3D G3DSA:3.40.50.150 32 286 3.0E-57 T 11-10-2018 VV93_v1c20130 bde991715932420ebc8538b33535cec7 286 Pfam PF13847 Methyltransferase domain 70 177 1.0E-11 T 11-10-2018 IPR025714 Methyltransferase domain VV93_v1c20130 bde991715932420ebc8538b33535cec7 286 SUPERFAMILY SSF53335 29 274 6.5E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c20130 bde991715932420ebc8538b33535cec7 286 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 26 282 40.709 T 11-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 VV93_v1c39330 30da6920b6c2d02ca6ef6df3980c618f 231 PIRSF PIRSF029287 1 229 3.3E-31 T 11-10-2018 IPR017748 T6S-associated protein TagF VV93_v1c39330 30da6920b6c2d02ca6ef6df3980c618f 231 Gene3D G3DSA:3.40.1730.10 8 230 2.3E-58 T 11-10-2018 IPR038225 T6S-associated protein TagF superfamily VV93_v1c39330 30da6920b6c2d02ca6ef6df3980c618f 231 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 11 141 5.6E-45 T 11-10-2018 IPR017748 T6S-associated protein TagF VV93_v1c39330 30da6920b6c2d02ca6ef6df3980c618f 231 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 11 140 1.5E-38 T 11-10-2018 IPR017748 T6S-associated protein TagF VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 72 146 2.4E-14 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 PRINTS PR00607 Class IE cytochrome C signature 121 133 9.4E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 PRINTS PR00607 Class IE cytochrome C signature 136 147 9.4E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 PRINTS PR00607 Class IE cytochrome C signature 93 103 9.4E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 PRINTS PR00607 Class IE cytochrome C signature 82 93 9.4E-15 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 Gene3D G3DSA:1.10.760.10 72 149 4.7E-33 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c00370 cf5bd0813c67f5897b97979f2fba3957 150 SUPERFAMILY SSF46626 73 147 1.67E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c28390 151bb4bbdf380782acf543d2cb51c149 176 Pfam PF04186 FxsA cytoplasmic membrane protein 7 114 1.3E-35 T 11-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 VV93_v1c20640 7b6a346ccea0ff071df3b0ea4637e27b 59 SUPERFAMILY SSF158997 1 53 3.27E-20 T 11-10-2018 VV93_v1c20640 7b6a346ccea0ff071df3b0ea4637e27b 59 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.232 T 11-10-2018 IPR038053 Uncharacterised protein family UPF0434 VV93_v1c20640 7b6a346ccea0ff071df3b0ea4637e27b 59 Pfam PF03966 Trm112p-like protein 2 41 3.1E-11 T 11-10-2018 IPR005651 Trm112-like VV93_v1c20640 7b6a346ccea0ff071df3b0ea4637e27b 59 Gene3D G3DSA:2.20.25.10 8 59 3.1E-23 T 11-10-2018 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 Pfam PF01726 LexA DNA binding domain 1 65 8.3E-29 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 Gene3D G3DSA:1.10.10.10 1 69 2.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 Hamap MF_00015 LexA repressor [lexA]. 3 204 32.01 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 TIGRFAM TIGR00498 lexA: repressor LexA 1 204 6.3E-81 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 116 126 7.0E-13 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 127 138 7.0E-13 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 155 167 7.0E-13 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 Gene3D G3DSA:2.10.109.10 85 207 1.0E-44 T 11-10-2018 VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 SUPERFAMILY SSF46785 3 69 3.09E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 SUPERFAMILY SSF51306 81 203 1.92E-36 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily VV93_v1c01110 326eb4879f53976aa93c03bb3fdda5ea 207 Pfam PF00717 Peptidase S24-like 119 184 2.3E-15 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C VV93_v1c15300 1f3f445755e7ca9359a7062ad4ea586f 80 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 71 1.2E-21 T 11-10-2018 IPR008554 Glutaredoxin-like VV93_v1c15300 1f3f445755e7ca9359a7062ad4ea586f 80 Gene3D G3DSA:3.40.30.10 1 80 9.0E-22 T 11-10-2018 VV93_v1c15300 1f3f445755e7ca9359a7062ad4ea586f 80 SUPERFAMILY SSF52833 1 74 1.1E-15 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 Gene3D G3DSA:3.40.190.290 91 288 1.1E-58 T 11-10-2018 VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 SUPERFAMILY SSF53850 90 292 1.65E-44 T 11-10-2018 VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 Pfam PF03466 LysR substrate binding domain 88 289 1.8E-42 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 Gene3D G3DSA:1.10.10.10 3 89 8.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 SUPERFAMILY SSF46785 4 85 5.01E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32390 bde977807ecaad6c2637d610b8cc7b95 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c40470 0d7240ac2807cf2718e2f86cb8748801 299 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 70 92 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site VV93_v1c40470 0d7240ac2807cf2718e2f86cb8748801 299 Pfam PF01040 UbiA prenyltransferase family 32 277 6.8E-63 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VV93_v1c40470 0d7240ac2807cf2718e2f86cb8748801 299 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 15 296 19.443 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VV93_v1c40470 0d7240ac2807cf2718e2f86cb8748801 299 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 18 294 7.7E-98 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 VV93_v1c40470 0d7240ac2807cf2718e2f86cb8748801 299 Gene3D G3DSA:1.10.357.140 23 184 2.1E-23 T 11-10-2018 VV93_v1c20950 77932c6577706bb6ae5e7942b081708d 154 PIRSF PIRSF012335 1 154 3.1E-73 T 11-10-2018 IPR016596 Protein of unknown function UCP012335 VV93_v1c20950 77932c6577706bb6ae5e7942b081708d 154 Pfam PF11008 Protein of unknown function (DUF2846) 15 126 5.2E-32 T 11-10-2018 IPR022548 Domain of unknown function DUF2846 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Pfam PF00694 Aconitase C-terminal domain 660 791 1.2E-30 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 195 208 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 406 417 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 142 155 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 166 174 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 271 284 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 209 224 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 285 298 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 364 378 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 PRINTS PR00415 Aconitase family signature 468 481 6.8E-26 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Gene3D G3DSA:3.30.499.10 362 565 3.1E-77 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 6 861 0.0 T 11-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Gene3D G3DSA:1.10.1440.20 566 622 8.4E-10 T 11-10-2018 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Pfam PF00330 Aconitase family (aconitate hydratase) 74 537 8.4E-145 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 SUPERFAMILY SSF52016 602 860 6.08E-68 T 11-10-2018 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Gene3D G3DSA:3.20.19.10 623 861 8.7E-84 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 SUPERFAMILY SSF53732 15 595 2.75E-185 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 VV93_v1c14370 87257c67005257b997e9506356a44004 866 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 32 859 2.7E-286 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 VV93_v1c14370 87257c67005257b997e9506356a44004 866 Gene3D G3DSA:3.30.499.20 12 361 2.2E-129 T 11-10-2018 VV93_v1c45480 37982a951602d47e27db77ca39d7e235 168 SUPERFAMILY SSF50341 21 161 3.79E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c45480 37982a951602d47e27db77ca39d7e235 168 Gene3D G3DSA:2.30.30.40 27 153 1.9E-31 T 11-10-2018 VV93_v1c45480 37982a951602d47e27db77ca39d7e235 168 SMART SM00260 20 159 1.4E-26 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c45480 37982a951602d47e27db77ca39d7e235 168 Gene3D G3DSA:2.40.50.180 43 154 1.9E-31 T 11-10-2018 VV93_v1c45480 37982a951602d47e27db77ca39d7e235 168 Pfam PF01584 CheW-like domain 24 160 6.3E-30 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 86 101 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 Pfam PF01235 Sodium:alanine symporter family 51 471 8.9E-150 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 217 236 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 189 207 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 304 322 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 363 385 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 426 446 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 PRINTS PR00175 Sodium/alanine symporter signature 86 108 1.8E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c07250 54d5362ae10c5a864c69311e332d2170 513 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 460 7.5E-135 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 SUPERFAMILY SSF51658 1 384 9.72E-79 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 394 3.4E-211 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 PIRSF PIRSF016049 1 394 5.8E-176 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 Gene3D G3DSA:3.20.20.150 1 392 3.9E-146 T 11-10-2018 VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 395 222.357 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 VV93_v1c44580 09627d384c77d8006e489a03fc2cc1b7 395 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 389 6.5E-156 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 SMART SM00895 165 289 5.9E-8 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 Gene3D G3DSA:1.10.10.10 1 74 3.5E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 73 1.5E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 Gene3D G3DSA:1.20.120.530 159 300 2.6E-10 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 Gene3D G3DSA:1.10.10.10 107 154 3.1E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 SUPERFAMILY SSF48008 164 295 7.06E-11 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 Pfam PF07729 FCD domain 183 288 2.1E-6 T 11-10-2018 IPR011711 GntR, C-terminal VV93_v1c44090 acc3af857d5a5033cc03e44aaec86999 321 SUPERFAMILY SSF46785 11 73 3.12E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42220 7e43a2b70e52eaf1214d04fca8abfec8 271 Gene3D G3DSA:3.40.50.80 131 270 1.1E-39 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c42220 7e43a2b70e52eaf1214d04fca8abfec8 271 Gene3D G3DSA:2.40.30.10 4 127 2.3E-29 T 11-10-2018 VV93_v1c42220 7e43a2b70e52eaf1214d04fca8abfec8 271 Pfam PF08021 Siderophore-interacting FAD-binding domain 15 127 2.7E-32 T 11-10-2018 IPR013113 FAD-binding 9, siderophore-interacting VV93_v1c42220 7e43a2b70e52eaf1214d04fca8abfec8 271 SUPERFAMILY SSF63380 14 128 5.67E-8 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c42220 7e43a2b70e52eaf1214d04fca8abfec8 271 Pfam PF04954 Siderophore-interacting protein 134 253 2.1E-34 T 11-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain VV93_v1c08160 f91be6ca1ad91558a1a67cbfe4538de0 208 SUPERFAMILY SSF53474 9 179 7.56E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c08160 f91be6ca1ad91558a1a67cbfe4538de0 208 Gene3D G3DSA:3.40.50.1820 14 202 7.4E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c08160 f91be6ca1ad91558a1a67cbfe4538de0 208 Pfam PF12697 Alpha/beta hydrolase family 16 133 9.4E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c27670 1c0636c55914d38e89601a52d017efba 75 Gene3D G3DSA:1.20.5.300 3 53 3.1E-7 T 11-10-2018 VV93_v1c27670 1c0636c55914d38e89601a52d017efba 75 Pfam PF04102 SlyX 9 75 9.9E-25 T 11-10-2018 IPR007236 SlyX VV93_v1c27670 1c0636c55914d38e89601a52d017efba 75 Hamap MF_00715 Protein SlyX [slyX]. 8 75 17.621 T 11-10-2018 IPR007236 SlyX VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 Pfam PF14559 Tetratricopeptide repeat 352 416 2.2E-10 T 11-10-2018 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 SUPERFAMILY SSF48452 311 455 4.09E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 Gene3D G3DSA:1.25.40.10 264 469 7.4E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 2 483 42.196 T 11-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 Gene3D G3DSA:3.30.2010.10 76 148 1.0E-6 T 11-10-2018 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 Pfam PF01435 Peptidase family M48 70 252 5.1E-28 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 SMART SM00028 307 340 56.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 SMART SM00028 426 459 12.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c22330 8f78c0b66405cb370ce3d3f09630baec 484 SMART SM00028 341 374 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c02300 f9b89b6e42ed306bed0e0ceb2f825ab8 341 Gene3D G3DSA:1.10.3720.10 103 332 3.4E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c02300 f9b89b6e42ed306bed0e0ceb2f825ab8 341 SUPERFAMILY SSF161098 108 321 1.83E-15 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c02300 f9b89b6e42ed306bed0e0ceb2f825ab8 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 132 338 8.1E-34 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 SUPERFAMILY SSF55957 359 445 5.76E-21 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 8.9E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 96 110 8.9E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 8.9E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 5 137 9.3E-46 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 8.4E-19 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Gene3D G3DSA:3.40.120.10 258 340 2.2E-62 T 11-10-2018 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Gene3D G3DSA:3.30.310.50 371 446 7.1E-25 T 11-10-2018 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Gene3D G3DSA:3.40.120.10 176 363 2.2E-62 T 11-10-2018 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 SUPERFAMILY SSF53738 4 182 1.14E-48 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 259 367 3.0E-30 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 97 106 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 SUPERFAMILY SSF53738 157 257 1.02E-29 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 SUPERFAMILY SSF53738 259 366 4.32E-29 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 442 2.4E-12 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Gene3D G3DSA:3.40.120.10 4 155 7.8E-49 T 11-10-2018 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 8 443 4.2E-203 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c24290 b8747e6607240fd926d118f9024654ac 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 4 445 46.868 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 SUPERFAMILY SSF55816 338 547 7.59E-25 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 Pfam PF02872 5'-nucleotidase, C-terminal domain 342 492 1.2E-21 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 Pfam PF00149 Calcineurin-like phosphoesterase 29 247 1.9E-14 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 Gene3D G3DSA:3.90.780.10 330 542 4.5E-31 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 ProSitePatterns PS00786 5'-nucleotidase signature 2. 107 118 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 PRINTS PR01607 Apyrase family signature 230 253 3.9E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 PRINTS PR01607 Apyrase family signature 257 277 3.9E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 PRINTS PR01607 Apyrase family signature 203 220 3.9E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 PRINTS PR01607 Apyrase family signature 26 44 3.9E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 SUPERFAMILY SSF56300 19 327 1.19E-75 T 11-10-2018 VV93_v1c14020 d8c3536612fba38ceaaacdcfb98ce53c 634 Gene3D G3DSA:3.60.21.10 24 321 1.0E-75 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c02520 26bb07361c9781ca970fb6783e67873d 62 Gene3D G3DSA:1.10.1220.10 6 51 2.6E-5 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VV93_v1c02520 26bb07361c9781ca970fb6783e67873d 62 SUPERFAMILY SSF47598 11 50 1.28E-6 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 VV93_v1c04780 c61d694d0d8f25dc4e7645fa89823490 264 Pfam PF13280 WYL domain 101 215 7.9E-10 T 11-10-2018 IPR026881 WYL domain VV93_v1c04780 c61d694d0d8f25dc4e7645fa89823490 264 PIRSF PIRSF015558 1 263 9.7E-59 T 11-10-2018 IPR016634 WYL domain protein, s026 type VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 Gene3D G3DSA:2.40.40.10 80 174 6.0E-39 T 11-10-2018 IPR036908 RlpA-like domain superfamily VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 SUPERFAMILY SSF50685 83 171 1.12E-10 T 11-10-2018 IPR036908 RlpA-like domain superfamily VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 83 248 6.1E-46 T 11-10-2018 IPR012997 Rare lipoprotein A VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 Pfam PF05036 Sporulation related domain 187 258 1.9E-9 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 Pfam PF03330 Lytic transglycolase 81 170 5.3E-28 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 21 173 25.138 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 VV93_v1c08410 cfe6c4a348428d5358ca40f590ffe7be 264 SUPERFAMILY SSF110997 186 258 1.96E-11 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 26 272 2.0E-122 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 Gene3D G3DSA:3.40.50.300 21 269 1.1E-64 T 11-10-2018 VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 SUPERFAMILY SSF52540 22 258 4.42E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 SMART SM00382 50 247 5.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c06770 7193a0fa9f28df81e436076d753aa586 272 Pfam PF00005 ABC transporter 42 197 6.0E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 2.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 Gene3D G3DSA:3.30.540.10 1 140 1.3E-50 T 11-10-2018 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 Pfam PF00459 Inositol monophosphatase family 2 258 4.0E-70 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 2.2E-33 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 2.2E-33 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.2E-33 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 2.2E-33 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 SUPERFAMILY SSF56655 1 259 6.68E-85 T 11-10-2018 VV93_v1c06980 ef5c99e1b5c774d74c502485c47f75ef 267 Gene3D G3DSA:3.40.190.80 143 267 7.9E-38 T 11-10-2018 VV93_v1c20280 e96b09ea6a0661c2e1dd477536bc49d5 151 Pfam PF05433 Glycine zipper 2TM domain 56 90 3.0E-9 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1338 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 7.3E-29 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1110.10 158 276 7.4E-28 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1265 1339 3.8E-27 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:2.40.50.100 714 788 3.1E-31 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.7E-24 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1263 1.6E-156 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 SUPERFAMILY SSF64484 11 1341 0.0 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:2.40.50.150 834 954 2.6E-44 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:2.40.270.10 1035 1241 2.0E-88 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1110.10 300 438 1.2E-34 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1100.10 647 713 2.1E-21 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1100.10 439 617 2.9E-65 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1100.10 19 157 3.3E-48 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1341 12.293 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:3.90.1800.10 1251 1305 8.1E-11 T 11-10-2018 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 231 1.1E-7 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 337 454 7.4E-17 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 1.1E-57 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 Gene3D G3DSA:2.40.270.10 790 833 1.1E-6 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c28760 111e1288efd48ea109d8c6095f811346 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c01510 0b6b2fa748e15169f99d3945b8b1dbdc 373 SMART SM00974 259 353 3.2E-27 T 11-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding VV93_v1c01510 0b6b2fa748e15169f99d3945b8b1dbdc 373 Pfam PF10544 T5orf172 domain 243 353 6.5E-14 T 11-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding VV93_v1c35070 0b6b2fa748e15169f99d3945b8b1dbdc 373 SMART SM00974 259 353 3.2E-27 T 11-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding VV93_v1c35070 0b6b2fa748e15169f99d3945b8b1dbdc 373 Pfam PF10544 T5orf172 domain 243 353 6.5E-14 T 11-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 Gene3D G3DSA:3.40.190.10 134 384 2.4E-124 T 11-10-2018 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 147 166 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 167 186 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 66 84 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 295 316 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 353 372 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 229 248 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 126 145 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 PRINTS PR00181 Maltose binding protein signature 32 50 2.6E-66 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 129 146 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 Gene3D G3DSA:3.40.190.10 45 353 2.4E-124 T 11-10-2018 VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 Pfam PF13416 Bacterial extracellular solute-binding protein 47 327 1.2E-42 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c30640 d539584db58cd824b9d3320bc765ea01 392 SUPERFAMILY SSF53850 23 391 1.63E-88 T 11-10-2018 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Gene3D G3DSA:3.40.50.1100 20 322 7.0E-135 T 11-10-2018 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 SUPERFAMILY SSF55021 332 418 5.8E-27 T 11-10-2018 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 48 61 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 SUPERFAMILY SSF53686 10 360 3.67E-107 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 10 508 3.5E-251 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Gene3D G3DSA:3.40.50.1100 56 152 7.0E-135 T 11-10-2018 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 SUPERFAMILY SSF55021 415 508 2.13E-26 T 11-10-2018 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 422 508 1.8E-26 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 324 414 5.5E-26 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Gene3D G3DSA:3.40.1020.10 333 509 4.1E-71 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 VV93_v1c29660 a082c5b13b8179227eacd60312f8b4d2 509 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 311 8.3E-84 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c20140 199eed60778610d86c172e491e8ece4f 266 Pfam PF02698 DUF218 domain 80 242 6.5E-27 T 11-10-2018 IPR003848 Domain of unknown function DUF218 VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 Gene3D G3DSA:3.40.50.300 1 202 2.9E-67 T 11-10-2018 VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 Pfam PF00271 Helicase conserved C-terminal domain 223 331 1.2E-25 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 SUPERFAMILY SSF52540 68 351 5.24E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 145 153 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 Gene3D G3DSA:3.40.50.300 205 395 1.2E-43 T 11-10-2018 VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 SMART SM00490 250 331 2.1E-28 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 Pfam PF00270 DEAD/DEAH box helicase 24 185 3.8E-47 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c44570 71a15fb1a0de05af831b72ba9a2198f5 412 SMART SM00487 19 212 3.6E-49 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c31000 67c30444d527af3277924866593187c1 222 Gene3D G3DSA:2.40.160.20 10 221 2.3E-17 T 11-10-2018 VV93_v1c31000 67c30444d527af3277924866593187c1 222 SUPERFAMILY SSF56925 20 218 1.26E-16 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c31000 67c30444d527af3277924866593187c1 222 Pfam PF13505 Outer membrane protein beta-barrel domain 7 218 3.8E-16 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Gene3D G3DSA:3.40.50.300 1055 1217 1.3E-13 T 11-10-2018 VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Pfam PF00271 Helicase conserved C-terminal domain 1109 1155 6.4E-6 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Pfam PF00270 DEAD/DEAH box helicase 100 187 6.9E-9 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 SUPERFAMILY SSF52540 62 389 4.53E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Gene3D G3DSA:3.40.50.300 58 221 3.1E-17 T 11-10-2018 VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 SMART SM00487 94 414 3.8E-14 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Gene3D G3DSA:3.40.50.300 254 401 1.6E-12 T 11-10-2018 VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 SUPERFAMILY SSF52540 114 1185 2.13E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 Pfam PF09369 Domain of unknown function (DUF1998) 1636 1707 6.5E-11 T 11-10-2018 IPR018973 DEAD/DEAH-box helicase, putative VV93_v1c07570 db1c45ec4fe6006783d45e882ce41666 1831 SMART SM00490 1060 1155 0.0013 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c18400 4c54c46c2747f2f57179ba1225670828 341 Pfam PF05128 Domain of unknown function (DUF697) 176 334 3.2E-52 T 11-10-2018 IPR021147 Protein of unknown function DUF697 VV93_v1c18400 4c54c46c2747f2f57179ba1225670828 341 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 61 334 1.2E-80 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 VV93_v1c18400 4c54c46c2747f2f57179ba1225670828 341 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 3 341 36.507 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 VV93_v1c09840 fe2ef9f65be6ebac093b9c36ddd9f223 399 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 5 78 4.8E-24 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VV93_v1c09840 fe2ef9f65be6ebac093b9c36ddd9f223 399 Pfam PF07670 Nucleoside recognition 87 182 2.6E-7 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c09840 fe2ef9f65be6ebac093b9c36ddd9f223 399 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 2 395 7.1E-137 T 11-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VV93_v1c09840 fe2ef9f65be6ebac093b9c36ddd9f223 399 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 189 396 2.6E-72 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 403 3.2E-176 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 Pfam PF01676 Metalloenzyme superfamily 2 397 5.6E-43 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 Gene3D G3DSA:3.40.720.10 3 406 6.3E-150 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 SUPERFAMILY SSF143856 118 234 3.66E-47 T 11-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 Gene3D G3DSA:3.30.70.1250 116 237 6.3E-150 T 11-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 Hamap MF_00740 Phosphopentomutase [deoB]. 1 406 53.676 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 PIRSF PIRSF001491 1 406 2.3E-160 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 VV93_v1c23980 d5d2a042bce961253fdea37ddfb2c015 406 SUPERFAMILY SSF53649 1 406 1.05E-68 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c16350 e68e436b5d29c74957f8a1cc7e961f43 84 Gene3D G3DSA:1.10.1220.170 41 84 2.1E-15 T 11-10-2018 VV93_v1c16350 e68e436b5d29c74957f8a1cc7e961f43 84 SUPERFAMILY SSF143120 1 81 4.32E-24 T 11-10-2018 IPR036165 YefM-like superfamily VV93_v1c16350 e68e436b5d29c74957f8a1cc7e961f43 84 Gene3D G3DSA:3.40.1620.10 1 40 1.6E-8 T 11-10-2018 VV93_v1c16350 e68e436b5d29c74957f8a1cc7e961f43 84 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 55 8.4E-8 T 11-10-2018 VV93_v1c16350 e68e436b5d29c74957f8a1cc7e961f43 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 8.4E-22 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM VV93_v1c44300 66993dda1937b4bc3a518667dbd811bf 177 SUPERFAMILY SSF53597 4 175 4.45E-36 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c44300 66993dda1937b4bc3a518667dbd811bf 177 Gene3D G3DSA:3.40.430.10 2 175 4.1E-54 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 VV93_v1c44300 66993dda1937b4bc3a518667dbd811bf 177 Pfam PF01872 RibD C-terminal domain 4 169 3.1E-20 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 VV93_v1c01140 76bfd3b86e92c011e0f3fd7ac2a412c2 213 Gene3D G3DSA:1.10.10.60 4 55 2.8E-23 T 11-10-2018 VV93_v1c01140 76bfd3b86e92c011e0f3fd7ac2a412c2 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VV93_v1c01140 76bfd3b86e92c011e0f3fd7ac2a412c2 213 SUPERFAMILY SSF46689 5 80 2.13E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c01140 76bfd3b86e92c011e0f3fd7ac2a412c2 213 Gene3D G3DSA:1.10.357.10 56 210 2.0E-35 T 11-10-2018 VV93_v1c01140 76bfd3b86e92c011e0f3fd7ac2a412c2 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 1.3E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c07600 0c0568c83336f725727a93f3bdb23c3e 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 1.1E-30 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 VV93_v1c07600 0c0568c83336f725727a93f3bdb23c3e 143 SUPERFAMILY SSF55961 1 142 1.37E-32 T 11-10-2018 VV93_v1c07600 0c0568c83336f725727a93f3bdb23c3e 143 Gene3D G3DSA:3.30.530.20 1 143 1.6E-37 T 11-10-2018 IPR023393 START-like domain superfamily VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 SMART SM00304 205 258 4.3E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 SMART SM00283 273 534 2.0E-72 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 SUPERFAMILY SSF58104 230 535 4.32E-72 T 11-10-2018 VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 501 6.5E-46 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 Gene3D G3DSA:1.10.287.950 204 536 1.6E-71 T 11-10-2018 VV93_v1c13130 c1fca59d2f4cec205fa79b891910ab56 536 Pfam PF00672 HAMP domain 206 254 3.5E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 Pfam PF04303 PrpF protein 21 403 1.6E-173 T 11-10-2018 IPR007400 PrpF protein VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 Gene3D G3DSA:3.10.310.10 26 400 1.7E-149 T 11-10-2018 VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 19 407 4.0E-228 T 11-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 Gene3D G3DSA:3.10.310.10 196 386 1.7E-149 T 11-10-2018 VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 SUPERFAMILY SSF54506 201 406 3.45E-75 T 11-10-2018 VV93_v1c14380 fa5edbc3bdcc82278e9c22569b8b379b 408 SUPERFAMILY SSF54506 18 197 2.28E-70 T 11-10-2018 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SMART SM00448 1 118 2.9E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SUPERFAMILY SSF52172 397 526 2.99E-6 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Pfam PF00072 Response regulator receiver domain 3 118 1.7E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Gene3D G3DSA:1.10.10.10 519 587 5.6E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Gene3D G3DSA:3.40.50.2300 1 131 6.9E-29 T 11-10-2018 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SMART SM00052 134 375 2.8E-67 T 11-10-2018 IPR001633 EAL domain VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 ProSitePatterns PS00622 LuxR-type HTH domain signature. 545 572 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Gene3D G3DSA:3.20.20.450 139 385 1.6E-72 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SUPERFAMILY SSF52172 1 133 1.42E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Pfam PF00196 Bacterial regulatory proteins, luxR family 530 584 7.6E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SUPERFAMILY SSF46894 522 585 1.26E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Pfam PF00563 EAL domain 140 370 1.6E-64 T 11-10-2018 IPR001633 EAL domain VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 561 573 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 545 561 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 531 545 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 Gene3D G3DSA:3.40.50.2300 394 512 1.7E-5 T 11-10-2018 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SMART SM00421 528 585 2.3E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c36450 9309c103da421d57f9a4a827234149b3 588 SUPERFAMILY SSF141868 141 384 3.53E-71 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c20690 40ad7a61488851d72ec9d1a51d13b504 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 413 2.4E-162 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 VV93_v1c20690 40ad7a61488851d72ec9d1a51d13b504 414 Pfam PF12704 MacB-like periplasmic core domain 30 241 5.5E-16 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c20690 40ad7a61488851d72ec9d1a51d13b504 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 4 414 1.4E-232 T 11-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 VV93_v1c20690 40ad7a61488851d72ec9d1a51d13b504 414 Pfam PF02687 FtsX-like permease family 300 407 1.0E-10 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c19140 828ed35ff0c04b3652d45efa5b7d8ad9 256 Pfam PF03741 Integral membrane protein TerC family 16 203 1.2E-41 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 45.166 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 Gene3D G3DSA:3.50.30.80 421 573 5.2E-56 T 11-10-2018 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 Pfam PF00920 Dehydratase family 34 604 4.5E-220 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 SUPERFAMILY SSF143975 3 420 7.45E-136 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 SUPERFAMILY SSF52016 421 608 1.33E-61 T 11-10-2018 VV93_v1c29650 15e862f07d67a6a27aca6c235ac97935 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.8E-266 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c21490 195943235300185ae48decc06a3d0ded 258 PRINTS PR01805 VacJ lipoprotein signature 150 167 1.2E-29 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VV93_v1c21490 195943235300185ae48decc06a3d0ded 258 PRINTS PR01805 VacJ lipoprotein signature 113 130 1.2E-29 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VV93_v1c21490 195943235300185ae48decc06a3d0ded 258 PRINTS PR01805 VacJ lipoprotein signature 62 78 1.2E-29 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VV93_v1c21490 195943235300185ae48decc06a3d0ded 258 PRINTS PR01805 VacJ lipoprotein signature 44 57 1.2E-29 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VV93_v1c21490 195943235300185ae48decc06a3d0ded 258 Pfam PF04333 MlaA lipoprotein 44 234 1.1E-62 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 VV93_v1c24780 45229f83a32c47194de10f3cb0110b64 307 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c24780 45229f83a32c47194de10f3cb0110b64 307 Pfam PF00005 ABC transporter 20 164 9.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c24780 45229f83a32c47194de10f3cb0110b64 307 Gene3D G3DSA:3.40.50.300 1 235 1.2E-65 T 11-10-2018 VV93_v1c24780 45229f83a32c47194de10f3cb0110b64 307 SUPERFAMILY SSF52540 3 232 3.48E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24780 45229f83a32c47194de10f3cb0110b64 307 SMART SM00382 29 213 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Gene3D G3DSA:1.10.10.60 86 194 6.8E-25 T 11-10-2018 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SUPERFAMILY SSF57884 7 91 2.62E-33 T 11-10-2018 IPR035451 Ada-like domain superfamily VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 143 185 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Gene3D G3DSA:1.10.340.30 320 420 3.6E-19 T 11-10-2018 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SUPERFAMILY SSF48150 311 459 4.89E-28 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Gene3D G3DSA:3.40.10.10 4 79 7.2E-29 T 11-10-2018 IPR035451 Ada-like domain superfamily VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SUPERFAMILY SSF46689 144 191 3.27E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Gene3D G3DSA:3.30.310.20 202 319 7.6E-21 T 11-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SUPERFAMILY SSF55945 202 301 4.71E-25 T 11-10-2018 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Pfam PF02805 Metal binding domain of Ada 14 77 1.5E-28 T 11-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Pfam PF06029 AlkA N-terminal domain 202 319 5.4E-33 T 11-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SMART SM01009 201 319 8.8E-28 T 11-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SUPERFAMILY SSF46689 92 139 1.08E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 SMART SM00342 106 189 2.0E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c30430 adc48e6369210bc3beeadd856310c26c 461 Pfam PF12833 Helix-turn-helix domain 112 190 1.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c23220 18618c24e7ad42ea1ba19d2d793719b8 142 Pfam PF02657 Fe-S metabolism associated domain 21 139 3.1E-47 T 11-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like VV93_v1c23220 18618c24e7ad42ea1ba19d2d793719b8 142 Gene3D G3DSA:3.90.1010.10 1 142 3.9E-51 T 11-10-2018 VV93_v1c23220 18618c24e7ad42ea1ba19d2d793719b8 142 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 7 141 3.5E-47 T 11-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE VV93_v1c23220 18618c24e7ad42ea1ba19d2d793719b8 142 SUPERFAMILY SSF82649 4 141 3.98E-50 T 11-10-2018 VV93_v1c36000 50f895315d40f27aabf5e1a284f7bfd3 421 Pfam PF00437 Type II/IV secretion system protein 71 347 4.7E-80 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c36000 50f895315d40f27aabf5e1a284f7bfd3 421 Gene3D G3DSA:3.30.450.380 1 166 2.9E-39 T 11-10-2018 VV93_v1c36000 50f895315d40f27aabf5e1a284f7bfd3 421 Gene3D G3DSA:3.40.50.300 168 407 8.8E-72 T 11-10-2018 VV93_v1c36000 50f895315d40f27aabf5e1a284f7bfd3 421 SUPERFAMILY SSF52540 56 358 4.93E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13000 7f457103f3da138b94c4e984130643b0 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 314 2.3E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c13000 7f457103f3da138b94c4e984130643b0 320 Gene3D G3DSA:1.10.3720.10 69 308 1.5E-22 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c13000 7f457103f3da138b94c4e984130643b0 320 SUPERFAMILY SSF161098 69 298 3.76E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33920 17727abcc5a49266edc4b9e6f3d14d31 304 Pfam PF05661 Protein of unknown function (DUF808) 4 289 1.4E-116 T 11-10-2018 IPR008526 Inner membrane protein YedI VV93_v1c33920 17727abcc5a49266edc4b9e6f3d14d31 304 PIRSF PIRSF016660 1 302 1.2E-121 T 11-10-2018 IPR008526 Inner membrane protein YedI VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 SUPERFAMILY SSF47648 2 67 5.76E-18 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 Pfam PF00591 Glycosyl transferase family, a/b domain 72 322 1.6E-103 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 330 5.5E-128 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 Gene3D G3DSA:1.20.970.10 10 183 9.5E-123 T 11-10-2018 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 SUPERFAMILY SSF52418 70 329 1.24E-93 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 Gene3D G3DSA:3.40.1030.10 67 321 9.5E-123 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 63 6.1E-16 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c11370 4ca7747099d9e7e3cf21c92280c56c78 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.519 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 VV93_v1c07070 5017ee312314c6bf12eaf22320a284f6 64 SUPERFAMILY SSF140319 1 63 4.05E-27 T 11-10-2018 IPR036762 IscX-like superfamily VV93_v1c07070 5017ee312314c6bf12eaf22320a284f6 64 Gene3D G3DSA:1.10.10.600 1 64 7.8E-28 T 11-10-2018 IPR036762 IscX-like superfamily VV93_v1c07070 5017ee312314c6bf12eaf22320a284f6 64 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 63 1.6E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VV93_v1c07070 5017ee312314c6bf12eaf22320a284f6 64 PIRSF PIRSF039003 1 64 5.4E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VV93_v1c07070 5017ee312314c6bf12eaf22320a284f6 64 Pfam PF04384 Iron-sulphur cluster assembly 1 64 1.3E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 Gene3D G3DSA:3.30.70.270 143 300 3.5E-47 T 11-10-2018 VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 SUPERFAMILY SSF52172 5 144 6.69E-42 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 SUPERFAMILY SSF55073 150 294 2.59E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 SMART SM00267 134 296 3.2E-49 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 Gene3D G3DSA:3.40.50.2300 6 142 1.1E-38 T 11-10-2018 VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 141 295 1.5E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 SMART SM00448 8 121 5.5E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 Pfam PF00072 Response regulator receiver domain 10 121 3.4E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c10800 af44f091afbed509029aa8e56d5ef516 304 Pfam PF00990 Diguanylate cyclase, GGDEF domain 145 292 1.4E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 PIRSF PIRSF038994 5 387 3.5E-122 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 Gene3D G3DSA:2.30.40.10 13 381 7.5E-125 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 11 380 4.8E-93 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 SUPERFAMILY SSF51338 9 385 1.99E-9 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 Pfam PF01979 Amidohydrolase family 55 383 9.7E-23 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 Gene3D G3DSA:3.20.20.140 58 354 7.5E-125 T 11-10-2018 VV93_v1c44120 caf6b3450ca90da22686d4b80edcac13 397 SUPERFAMILY SSF51556 58 354 7.4E-98 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c31970 47f18d1193cfaa372a8313c6212a7861 242 SUPERFAMILY SSF53167 4 220 7.2E-68 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c31970 47f18d1193cfaa372a8313c6212a7861 242 Pfam PF01048 Phosphorylase superfamily 17 199 7.1E-32 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c31970 47f18d1193cfaa372a8313c6212a7861 242 Gene3D G3DSA:3.40.50.1580 1 241 2.0E-73 T 11-10-2018 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.2E-39 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.662 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.0E-50 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 Gene3D G3DSA:3.90.470.10 1 110 2.1E-48 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03510 4a8e027edf593979c60b380a74d4b34d 110 SUPERFAMILY SSF54843 1 109 7.85E-45 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c22320 41a6964a829743ee31a302191edd941f 80 SUPERFAMILY SSF64307 4 74 6.02E-14 T 11-10-2018 IPR036868 TusA-like domain superfamily VV93_v1c22320 41a6964a829743ee31a302191edd941f 80 Pfam PF01206 Sulfurtransferase TusA 4 70 5.5E-13 T 11-10-2018 IPR001455 TusA-like domain VV93_v1c22320 41a6964a829743ee31a302191edd941f 80 Gene3D G3DSA:3.30.110.40 1 73 5.6E-10 T 11-10-2018 IPR036868 TusA-like domain superfamily VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 Gene3D G3DSA:2.40.500.20 83 194 1.5E-41 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 1.3E-34 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 5.9E-38 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 SUPERFAMILY SSF46609 1 84 2.75E-35 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 Gene3D G3DSA:1.10.287.990 20 82 2.0E-25 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PIRSF PIRSF000349 1 194 8.7E-84 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.4E-21 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.4E-21 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 1.4E-21 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.4E-21 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.4E-21 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c10980 05ffbd85142505ae298bbf93555ef2f0 194 SUPERFAMILY SSF54719 84 193 7.2E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 Gene3D G3DSA:1.10.10.10 3 89 8.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 4.2E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c35930 d56bfd4007f30f78d27f5ed49089df50 283 SUPERFAMILY SSF46785 6 110 6.96E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c34290 b047c7a02e0728d5d19a7c461bb7239b 299 SUPERFAMILY SSF53335 19 256 1.07E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c34290 b047c7a02e0728d5d19a7c461bb7239b 299 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 7 293 18.947 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 VV93_v1c34290 b047c7a02e0728d5d19a7c461bb7239b 299 Gene3D G3DSA:3.40.50.150 42 290 3.4E-53 T 11-10-2018 VV93_v1c34290 b047c7a02e0728d5d19a7c461bb7239b 299 Pfam PF01564 Spermine/spermidine synthase domain 83 215 1.0E-6 T 11-10-2018 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Gene3D G3DSA:2.40.10.120 37 261 2.0E-85 T 11-10-2018 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 453 1.2E-164 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 SUPERFAMILY SSF50156 381 452 1.58E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 373 444 2.0E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 SMART SM00228 374 447 3.6E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 SMART SM00228 267 349 6.2E-16 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Gene3D G3DSA:2.30.42.10 362 455 3.3E-27 T 11-10-2018 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Gene3D G3DSA:2.30.42.10 265 361 1.2E-27 T 11-10-2018 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Pfam PF13180 PDZ domain 269 358 7.7E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 1.5E-57 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 SUPERFAMILY SSF50494 11 275 2.7E-64 T 11-10-2018 IPR009003 Peptidase S1, PA clan VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 SUPERFAMILY SSF50156 233 350 8.25E-24 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 VV93_v1c05320 41e549eec986ff5589ef642f22272a55 455 Pfam PF13365 Trypsin-like peptidase domain 92 228 2.2E-31 T 11-10-2018 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 Pfam PF01464 Transglycosylase SLT domain 489 601 7.5E-30 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 505 533 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 SUPERFAMILY SSF48435 33 481 2.75E-127 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 Gene3D G3DSA:1.10.1240.20 410 476 2.5E-22 T 11-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 Gene3D G3DSA:1.10.530.10 477 648 5.5E-50 T 11-10-2018 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 SUPERFAMILY SSF53955 484 642 1.06E-48 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 Gene3D G3DSA:1.25.20.10 33 394 1.4E-99 T 11-10-2018 VV93_v1c06430 90852cd612798d5b28a634a2a5534ec3 648 Pfam PF14718 Soluble lytic murein transglycosylase L domain 411 476 1.6E-23 T 11-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 SUPERFAMILY SSF55073 169 318 2.28E-39 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 SUPERFAMILY SSF55781 28 158 2.4E-27 T 11-10-2018 VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 Pfam PF01590 GAF domain 28 154 5.6E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 162 318 1.7E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 Gene3D G3DSA:3.30.450.40 13 163 1.8E-19 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 SMART SM00267 151 318 2.2E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 318 5.8E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 Gene3D G3DSA:3.30.70.270 165 322 8.4E-44 T 11-10-2018 VV93_v1c31530 dd4a778582205d514919465c5c0ce288 322 SMART SM00065 26 168 4.0E-12 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c43890 67c085925496c38085af13fbf4a28446 324 Pfam PF08908 Domain of unknown function (DUF1852) 1 321 3.3E-183 T 11-10-2018 IPR015004 Protein of unknown function DUF1852 VV93_v1c43890 67c085925496c38085af13fbf4a28446 324 PIRSF PIRSF034367 1 324 3.2E-199 T 11-10-2018 IPR015004 Protein of unknown function DUF1852 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 329 3.5E-105 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 329 36.757 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 Pfam PF04055 Radical SAM superfamily 19 181 5.3E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 SMART SM00729 14 219 9.2E-5 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 SUPERFAMILY SSF102114 6 281 1.31E-69 T 11-10-2018 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 312 5.2E-39 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 Gene3D G3DSA:3.20.20.70 2 329 2.0E-81 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c11170 60061c7410f13303b5d003be585b67ce 329 Pfam PF13353 4Fe-4S single cluster domain 23 125 1.7E-9 T 11-10-2018 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 Gene3D G3DSA:1.10.287.950 151 477 3.7E-65 T 11-10-2018 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 288 440 1.4E-37 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 SMART SM00283 214 475 1.7E-53 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 235 264 2.8E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 341 370 2.8E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 312 339 2.8E-24 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c37240 8e865c1f1f57caf42ca10149b6144a38 477 SUPERFAMILY SSF58104 166 476 4.97E-66 T 11-10-2018 VV93_v1c27610 ab5e17361ec13fd2d42365dd25bbeb32 91 SUPERFAMILY SSF75169 1 90 1.79E-20 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c27610 ab5e17361ec13fd2d42365dd25bbeb32 91 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 90 3.0E-23 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VV93_v1c27610 ab5e17361ec13fd2d42365dd25bbeb32 91 Pfam PF04077 DsrH like protein 9 85 3.3E-19 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 VV93_v1c27610 ab5e17361ec13fd2d42365dd25bbeb32 91 Gene3D G3DSA:3.40.1260.10 1 90 1.2E-22 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c33910 8cda61ae98638c1b1f37c3b4201f8a86 305 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 78 176 5.8E-7 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c33910 8cda61ae98638c1b1f37c3b4201f8a86 305 SUPERFAMILY SSF53187 38 288 1.32E-34 T 11-10-2018 VV93_v1c33910 8cda61ae98638c1b1f37c3b4201f8a86 305 Gene3D G3DSA:3.40.630.10 4 305 5.1E-111 T 11-10-2018 VV93_v1c37480 85f6dc40ab9c9a6569d41ddb4865040f 144 SUPERFAMILY SSF54637 1 138 3.32E-29 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c37480 85f6dc40ab9c9a6569d41ddb4865040f 144 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 2.6E-37 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 VV93_v1c37480 85f6dc40ab9c9a6569d41ddb4865040f 144 Gene3D G3DSA:3.10.129.10 1 142 3.2E-56 T 11-10-2018 VV93_v1c37480 85f6dc40ab9c9a6569d41ddb4865040f 144 Pfam PF03061 Thioesterase superfamily 52 128 1.7E-14 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VV93_v1c24010 3bfd2aac9c701db92e2eaff80100c70a 420 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 197 417 2.0E-72 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VV93_v1c24010 3bfd2aac9c701db92e2eaff80100c70a 420 Pfam PF07670 Nucleoside recognition 95 191 3.1E-7 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c24010 3bfd2aac9c701db92e2eaff80100c70a 420 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 417 2.1E-150 T 11-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VV93_v1c24010 3bfd2aac9c701db92e2eaff80100c70a 420 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 8.7E-26 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 57 361 3.7E-67 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 SUPERFAMILY SSF111369 63 277 5.89E-27 T 11-10-2018 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 Gene3D G3DSA:2.40.420.20 53 359 4.5E-77 T 11-10-2018 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 Gene3D G3DSA:2.40.30.170 58 282 4.5E-77 T 11-10-2018 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 Gene3D G3DSA:2.40.50.100 72 205 4.5E-77 T 11-10-2018 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 Gene3D G3DSA:1.10.287.470 106 165 4.5E-77 T 11-10-2018 VV93_v1c35420 f204f3e3f83efec222d72d7074190f1b 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 274 3.4E-16 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c00050 8d9609ce339bc5e8f71428a0bd19b329 144 SUPERFAMILY SSF49764 6 137 1.92E-23 T 11-10-2018 IPR008978 HSP20-like chaperone VV93_v1c00050 8d9609ce339bc5e8f71428a0bd19b329 144 Pfam PF00011 Hsp20/alpha crystallin family 43 136 3.2E-19 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain VV93_v1c00050 8d9609ce339bc5e8f71428a0bd19b329 144 Gene3D G3DSA:2.60.40.790 34 137 2.6E-22 T 11-10-2018 IPR008978 HSP20-like chaperone VV93_v1c38250 8152fd1c16ae0d2d115abe787e52915d 145 Gene3D G3DSA:1.10.3440.10 14 144 8.4E-6 T 11-10-2018 IPR023132 Sama2622-like superfamily VV93_v1c38250 8152fd1c16ae0d2d115abe787e52915d 145 SUPERFAMILY SSF158675 1 145 6.15E-54 T 11-10-2018 IPR023132 Sama2622-like superfamily VV93_v1c38250 8152fd1c16ae0d2d115abe787e52915d 145 Pfam PF11269 Protein of unknown function (DUF3069) 24 143 6.9E-51 T 11-10-2018 IPR021422 Protein of unknown function DUF3069 VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 SUPERFAMILY SSF161111 30 229 2.75E-51 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 Gene3D G3DSA:1.20.1510.10 30 228 1.7E-62 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 Pfam PF01545 Cation efflux family 37 228 5.9E-44 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 Pfam PF16916 Dimerisation domain of Zinc Transporter 232 309 5.3E-25 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 Gene3D G3DSA:3.30.70.1350 229 312 5.0E-30 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 SUPERFAMILY SSF160240 232 310 3.79E-24 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 VV93_v1c28330 12981dbac28edda3f9c02abd74954ce3 324 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 34 309 2.5E-70 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 VV93_v1c00500 a1b1386021d8d3c436578aa110bedcb2 298 SMART SM00448 1 115 7.8E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c00500 a1b1386021d8d3c436578aa110bedcb2 298 Pfam PF00072 Response regulator receiver domain 3 115 1.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c00500 a1b1386021d8d3c436578aa110bedcb2 298 Gene3D G3DSA:3.40.50.12740 1 240 4.5E-31 T 11-10-2018 VV93_v1c00500 a1b1386021d8d3c436578aa110bedcb2 298 SUPERFAMILY SSF52172 2 127 2.7E-30 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 SUPERFAMILY SSF89260 510 605 9.94E-5 T 11-10-2018 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Gene3D G3DSA:2.60.120.380 509 609 2.0E-43 T 11-10-2018 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 530 594 2.2E-9 T 11-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Pfam PF03413 Peptidase propeptide and YPEB domain 115 191 3.2E-10 T 11-10-2018 IPR025711 PepSY domain VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 52 100 1.1E-10 T 11-10-2018 IPR011096 FTP domain VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 342 358 1.9E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 425 441 1.9E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 363 374 1.9E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 308 328 1.9E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 SUPERFAMILY SSF55486 200 500 5.86E-87 T 11-10-2018 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Gene3D G3DSA:3.10.450.40 111 196 9.4E-29 T 11-10-2018 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Gene3D G3DSA:3.10.450.490 20 110 2.7E-8 T 11-10-2018 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Gene3D G3DSA:1.10.390.10 356 505 3.8E-50 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 354 498 5.4E-37 T 11-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 209 351 1.6E-36 T 11-10-2018 IPR013856 Peptidase M4 domain GO:0004222 VV93_v1c43660 9aa3c39ed95a2d78bfb1a8acb115d800 609 Gene3D G3DSA:3.10.170.10 199 355 2.2E-61 T 11-10-2018 VV93_v1c34130 adc40409fa79d35235eb05ec3feff529 176 TIGRFAM TIGR04110 heme_HutZ: heme utilization protein HutZ 4 171 3.4E-89 T 11-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VV93_v1c34130 adc40409fa79d35235eb05ec3feff529 176 SUPERFAMILY SSF50475 12 162 6.55E-34 T 11-10-2018 VV93_v1c34130 adc40409fa79d35235eb05ec3feff529 176 Gene3D G3DSA:2.30.110.10 11 175 1.8E-55 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c34130 adc40409fa79d35235eb05ec3feff529 176 PIRSF PIRSF004633 1 176 6.6E-80 T 11-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain VV93_v1c34130 adc40409fa79d35235eb05ec3feff529 176 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 14 105 5.5E-19 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 SUPERFAMILY SSF55604 438 510 5.75E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 411 498 1.9E-23 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 Pfam PF02378 Phosphotransferase system, EIIC 11 353 4.8E-65 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 451 468 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 509 7.5E-209 T 11-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 Gene3D G3DSA:3.30.1360.60 434 513 8.0E-25 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c09350 a6c7b1784d793bfcda2388fcb60ef478 523 Pfam PF00367 phosphotransferase system, EIIB 440 473 3.6E-13 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c17920 716aecfdc97efea210bcd06055191848 327 Gene3D G3DSA:3.40.190.10 127 208 5.1E-10 T 11-10-2018 VV93_v1c17920 716aecfdc97efea210bcd06055191848 327 Gene3D G3DSA:3.40.190.10 32 126 4.8E-5 T 11-10-2018 VV93_v1c17920 716aecfdc97efea210bcd06055191848 327 Pfam PF09084 NMT1/THI5 like 47 255 2.4E-18 T 11-10-2018 IPR015168 SsuA/THI5-like VV93_v1c17920 716aecfdc97efea210bcd06055191848 327 SUPERFAMILY SSF53850 36 261 4.24E-27 T 11-10-2018 VV93_v1c17920 716aecfdc97efea210bcd06055191848 327 Gene3D G3DSA:3.40.190.10 209 327 2.1E-8 T 11-10-2018 VV93_v1c32530 1f06941e797970278edbd721bb49e085 249 Gene3D G3DSA:1.20.144.10 9 240 2.2E-46 T 11-10-2018 VV93_v1c32530 1f06941e797970278edbd721bb49e085 249 SUPERFAMILY SSF48317 35 232 2.88E-21 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VV93_v1c32530 1f06941e797970278edbd721bb49e085 249 SMART SM00014 80 228 9.7E-7 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c32530 1f06941e797970278edbd721bb49e085 249 Pfam PF01569 PAP2 superfamily 84 228 8.7E-20 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c44940 70cdab8c08e72a13976b704e589f48a9 335 SUPERFAMILY SSF161098 98 311 6.38E-11 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c44940 70cdab8c08e72a13976b704e589f48a9 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 328 4.5E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c44940 70cdab8c08e72a13976b704e589f48a9 335 Gene3D G3DSA:1.10.3720.10 96 323 9.4E-13 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 Gene3D G3DSA:3.20.20.140 1 264 6.7E-74 T 11-10-2018 VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 PIRSF PIRSF005902 1 265 8.5E-60 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 Pfam PF01026 TatD related DNase 4 262 2.5E-56 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 SUPERFAMILY SSF51556 1 263 7.38E-69 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c24020 6689aab0f0e5ea4d2052c8377568435d 265 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 198 214 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 Pfam PF08376 Nitrate and nitrite sensing 59 296 1.7E-34 T 11-10-2018 IPR013587 Nitrate/nitrite sensing protein VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 Gene3D G3DSA:1.10.287.950 334 664 4.0E-62 T 11-10-2018 VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 SMART SM00283 402 663 2.4E-52 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 SUPERFAMILY SSF58104 355 664 2.35E-63 T 11-10-2018 VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 SMART SM00304 334 387 0.0055 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34390 51916d35c0190df0683bf3755e2b3d48 664 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 475 629 4.4E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c41970 8949e17dc8858c466825d873debeb383 655 SUPERFAMILY SSF141868 412 647 2.62E-66 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c41970 8949e17dc8858c466825d873debeb383 655 Pfam PF00563 EAL domain 413 636 1.7E-56 T 11-10-2018 IPR001633 EAL domain VV93_v1c41970 8949e17dc8858c466825d873debeb383 655 Gene3D G3DSA:3.20.20.450 402 651 1.4E-67 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c41970 8949e17dc8858c466825d873debeb383 655 Pfam PF02378 Phosphotransferase system, EIIC 93 295 1.0E-18 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c41970 8949e17dc8858c466825d873debeb383 655 SMART SM00052 399 641 9.6E-60 T 11-10-2018 IPR001633 EAL domain VV93_v1c43580 2e87ae51cdabeda8062083270180c342 217 Pfam PF00881 Nitroreductase family 8 193 4.9E-28 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 VV93_v1c43580 2e87ae51cdabeda8062083270180c342 217 Gene3D G3DSA:3.40.109.10 2 217 8.3E-59 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c43580 2e87ae51cdabeda8062083270180c342 217 SUPERFAMILY SSF55469 1 216 1.22E-64 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 202 297 1.6E-30 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Gene3D G3DSA:3.30.70.120 225 298 3.6E-33 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 SUPERFAMILY SSF54913 225 297 5.23E-21 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Pfam PF08029 HisG, C-terminal domain 222 295 5.1E-24 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Gene3D G3DSA:3.40.190.10 102 191 2.1E-70 T 11-10-2018 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 SUPERFAMILY SSF53850 5 222 4.25E-67 T 11-10-2018 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 5 298 35.48 T 11-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 6 196 3.3E-55 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 155 176 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Gene3D G3DSA:3.40.190.10 6 219 2.1E-70 T 11-10-2018 VV93_v1c12630 f72660d3af5fd7f5cdd3e128e2dbd9ea 298 Pfam PF01634 ATP phosphoribosyltransferase 53 218 7.7E-46 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 VV93_v1c39300 2d701824f094a34ef0499753156a2f7b 170 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 9 161 3.1E-61 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VV93_v1c39300 2d701824f094a34ef0499753156a2f7b 170 PIRSF PIRSF028301 1 170 6.7E-66 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VV93_v1c39300 2d701824f094a34ef0499753156a2f7b 170 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 162 1.1E-60 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 SUPERFAMILY SSF102114 34 362 1.96E-54 T 11-10-2018 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 Pfam PF04055 Radical SAM superfamily 81 222 5.3E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 Gene3D G3DSA:3.20.20.70 14 364 2.5E-107 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 3 366 8.5E-176 T 11-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 256 357 1.9E-27 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c29210 450c1ff03b33440b7aad0ebecb099f60 374 SMART SM00876 256 359 4.0E-38 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 Pfam PF07238 PilZ domain 112 198 1.9E-12 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 Gene3D G3DSA:2.40.10.220 111 215 1.5E-7 T 11-10-2018 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 Gene3D G3DSA:2.30.110.10 3 110 2.6E-6 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 SUPERFAMILY SSF141371 114 215 1.37E-20 T 11-10-2018 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 SUPERFAMILY SSF141371 2 113 1.29E-23 T 11-10-2018 VV93_v1c41450 71e1abcc7aee251dccaf197b13341b5b 219 Pfam PF12945 Flagellar protein YcgR 15 103 2.4E-9 T 11-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 PIRSF PIRSF001435 1 211 1.5E-52 T 11-10-2018 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Gene3D G3DSA:1.10.340.30 21 132 1.1E-79 T 11-10-2018 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 SMART SM00478 38 185 1.0E-57 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Gene3D G3DSA:1.10.1670.10 11 203 1.1E-79 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 38.495 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 2.6E-90 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Pfam PF00633 Helix-hairpin-helix motif 100 127 5.4E-8 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 SUPERFAMILY SSF48150 2 207 1.88E-72 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.5E-19 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c11060 c5c7060fd952e6670fdbf53e7e947f4d 213 SMART SM00525 186 206 4.4E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 Pfam PF13192 Thioredoxin domain 120 195 3.9E-11 T 11-10-2018 IPR012336 Thioredoxin-like fold VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 443 459 1.2E-34 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 316 334 1.2E-34 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 1.2E-34 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 358 376 1.2E-34 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 470 492 1.2E-34 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 SUPERFAMILY SSF52833 1 101 2.12E-28 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PIRSF PIRSF000238 1 522 7.0E-258 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 SUPERFAMILY SSF52833 104 197 4.09E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 Gene3D G3DSA:3.50.50.60 328 451 3.7E-105 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 Gene3D G3DSA:3.40.30.80 1 200 1.2E-64 T 11-10-2018 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 354 378 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 317 325 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 406 422 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 480 498 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 339 351 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 445 466 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 3.2E-60 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 520 5.6E-255 T 11-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 346 366 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 Gene3D G3DSA:3.50.50.60 213 510 3.7E-105 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 506 2.4E-42 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c39930 3acfc7ecea66ebddf3e13b93b12355b1 522 SUPERFAMILY SSF51905 204 516 4.8E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c26620 688a54551877628a84a7828390c8488f 165 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 3.0E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26620 688a54551877628a84a7828390c8488f 165 Gene3D G3DSA:3.30.700.10 9 161 1.9E-7 T 11-10-2018 VV93_v1c26620 688a54551877628a84a7828390c8488f 165 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 1.2E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26620 688a54551877628a84a7828390c8488f 165 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 1.0E-6 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VV93_v1c26620 688a54551877628a84a7828390c8488f 165 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 1.0E-6 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VV93_v1c26620 688a54551877628a84a7828390c8488f 165 SUPERFAMILY SSF54523 9 147 2.12E-11 T 11-10-2018 VV93_v1c20790 91523d6fb8cb00a59ab2ca51572ec2c8 196 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 6 187 2.9E-74 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB VV93_v1c20790 91523d6fb8cb00a59ab2ca51572ec2c8 196 Gene3D G3DSA:3.40.50.10610 39 188 1.0E-43 T 11-10-2018 VV93_v1c20790 91523d6fb8cb00a59ab2ca51572ec2c8 196 Pfam PF13036 Peptidoglycan-synthase activator LpoB 41 185 3.5E-55 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB VV93_v1c06690 649486e48785ce9bb91804d9f2c84ced 304 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 301 39.488 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 VV93_v1c06690 649486e48785ce9bb91804d9f2c84ced 304 Pfam PF04381 Putative exonuclease, RdgC 1 298 1.0E-125 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 VV93_v1c21050 4e636d6ea3da612a06842aa4afdf55dd 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 4.6E-14 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VV93_v1c21050 4e636d6ea3da612a06842aa4afdf55dd 97 SUPERFAMILY SSF54909 1 92 6.44E-27 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c21050 4e636d6ea3da612a06842aa4afdf55dd 97 Gene3D G3DSA:3.30.70.100 1 95 1.0E-25 T 11-10-2018 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 PIRSF PIRSF002808 5 453 6.8E-168 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 418 3.1E-150 T 11-10-2018 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 Gene3D G3DSA:1.20.1250.20 19 227 1.6E-57 T 11-10-2018 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 SUPERFAMILY SSF103473 18 451 5.49E-87 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 Pfam PF07690 Major Facilitator Superfamily 34 401 4.7E-48 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 Gene3D G3DSA:1.20.1250.20 241 452 4.8E-62 T 11-10-2018 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 9.2E-233 T 11-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 VV93_v1c39020 5db7b82ab15f6f92af1cd4ca95bcdd6f 458 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 11-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 VV93_v1c29230 998f800da9053a7070d3db89a5715219 69 Pfam PF02597 ThiS family 7 69 1.6E-13 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VV93_v1c29230 998f800da9053a7070d3db89a5715219 69 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 6 69 2.1E-20 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis VV93_v1c29230 998f800da9053a7070d3db89a5715219 69 SUPERFAMILY SSF54285 5 69 3.78E-15 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VV93_v1c29230 998f800da9053a7070d3db89a5715219 69 Gene3D G3DSA:3.10.20.30 4 69 2.2E-18 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 264 276 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 216 231 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 92 287 1.3E-82 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 Pfam PF00813 FliP family 92 283 6.7E-80 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 209 221 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 148 160 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 277 287 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 188 200 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 160 174 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 88 97 1.1E-17 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 109 129 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 90 109 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 261 286 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 237 258 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 216 236 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c21740 a0fb28a2571439733c965b772346055d 289 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 129 148 5.1E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Gene3D G3DSA:3.40.50.720 1 208 4.7E-87 T 11-10-2018 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 488 36.988 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 5.6E-125 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Gene3D G3DSA:1.10.1040.10 209 494 2.5E-121 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 SUPERFAMILY SSF48179 210 341 4.08E-40 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 SUPERFAMILY SSF51735 27 209 7.05E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 341 1.2E-26 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 485 1.4E-16 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 SUPERFAMILY SSF48179 348 487 1.87E-42 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c00310 815e40ea74c8b9329fe92e8cb047b063 494 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 6.1E-60 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 10 223 3.4E-110 T 11-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 4 224 33.543 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 Pfam PF04055 Radical SAM superfamily 27 124 3.6E-8 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 Gene3D G3DSA:3.20.20.70 3 224 2.7E-54 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 SUPERFAMILY SSF102114 27 123 7.06E-7 T 11-10-2018 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 Pfam PF13394 4Fe-4S single cluster domain 25 135 9.6E-11 T 11-10-2018 VV93_v1c14460 17c63fbd2127caac59c3e05aef110630 224 PIRSF PIRSF000370 2 224 2.1E-69 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Gene3D G3DSA:3.90.480.20 554 639 3.0E-5 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 634 773 3.2E-13 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.9E-15 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.9E-15 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.9E-15 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 6.9E-15 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 6.9E-15 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 SUPERFAMILY SSF51905 3 187 1.71E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 SUPERFAMILY SSF56014 634 809 1.57E-45 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 801 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Gene3D G3DSA:3.50.50.60 7 283 1.3E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 561 623 2.9E-11 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Gene3D G3DSA:3.30.413.10 640 745 5.9E-22 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PIRSF PIRSF037149 1 836 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 680 696 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Pfam PF04324 BFD-like [2Fe-2S] binding domain 424 472 3.1E-14 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00397 Sirohaem Fe-binding site signature 680 698 7.3E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00397 Sirohaem Fe-binding site signature 637 655 7.3E-6 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 286 1.4E-54 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 SUPERFAMILY SSF55124 503 629 3.11E-31 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 SUPERFAMILY SSF51905 144 311 2.27E-27 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 7.2E-11 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 7.2E-11 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 7.2E-11 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 7.2E-11 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Gene3D G3DSA:1.10.10.1100 424 478 3.1E-12 T 11-10-2018 VV93_v1c38690 14cb9cb6a2230eb9d83d5f8522f5e235 853 Gene3D G3DSA:3.50.50.60 110 246 1.3E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c34990 d71d96a1d57f63fb556a7282dde6c1ef 129 Gene3D G3DSA:1.10.3990.20 8 116 3.6E-34 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily VV93_v1c34990 d71d96a1d57f63fb556a7282dde6c1ef 129 Pfam PF13467 Ribbon-helix-helix domain 16 83 7.0E-24 T 11-10-2018 IPR027373 Ribbon-helix-helix domain VV93_v1c01430 d71d96a1d57f63fb556a7282dde6c1ef 129 Gene3D G3DSA:1.10.3990.20 8 116 3.6E-34 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily VV93_v1c01430 d71d96a1d57f63fb556a7282dde6c1ef 129 Pfam PF13467 Ribbon-helix-helix domain 16 83 7.0E-24 T 11-10-2018 IPR027373 Ribbon-helix-helix domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 SMART SM00267 300 474 4.7E-57 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 SUPERFAMILY SSF55073 316 472 4.94E-46 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 Gene3D G3DSA:3.30.70.270 302 473 3.8E-56 T 11-10-2018 VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 Pfam PF00990 Diguanylate cyclase, GGDEF domain 311 469 1.0E-43 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 SUPERFAMILY SSF55785 174 298 5.41E-16 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 182 307 1.1E-12 T 11-10-2018 IPR000014 PAS domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 SMART SM00091 185 251 2.0E-8 T 11-10-2018 IPR000014 PAS domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 Gene3D G3DSA:3.30.450.20 174 301 2.1E-16 T 11-10-2018 VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 308 471 4.2E-50 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c26840 1ebfa84c66428f365d4b96f660605fb1 479 Pfam PF13426 PAS domain 196 299 1.2E-7 T 11-10-2018 IPR000014 PAS domain VV93_v1c42310 e44e983a81632dec3cc7e63dc8df587f 142 Pfam PF05618 Putative ATP-dependant zinc protease 6 139 1.0E-28 T 11-10-2018 VV93_v1c42310 e44e983a81632dec3cc7e63dc8df587f 142 SUPERFAMILY SSF50630 6 140 2.34E-40 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c42310 e44e983a81632dec3cc7e63dc8df587f 142 Gene3D G3DSA:2.40.70.10 3 133 8.3E-30 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c04690 b0989cc07a834e0d23d2ef7491ca8c0d 139 Pfam PF05068 Mannitol repressor 1 133 2.4E-49 T 11-10-2018 IPR007761 Mannitol repressor MtlR-like VV93_v1c04690 b0989cc07a834e0d23d2ef7491ca8c0d 139 SUPERFAMILY SSF158668 1 133 1.09E-44 T 11-10-2018 IPR038026 MtlR-like superfamily VV93_v1c04690 b0989cc07a834e0d23d2ef7491ca8c0d 139 Gene3D G3DSA:1.20.120.330 1 135 3.8E-54 T 11-10-2018 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 Pfam PF13377 Periplasmic binding protein-like domain 241 400 4.7E-34 T 11-10-2018 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 Gene3D G3DSA:1.10.260.40 70 126 3.2E-22 T 11-10-2018 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 SUPERFAMILY SSF47413 73 132 4.78E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 SUPERFAMILY SSF53822 133 403 4.93E-81 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 SMART SM00354 73 143 5.9E-27 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 Gene3D G3DSA:3.40.50.2300 127 377 9.8E-74 T 11-10-2018 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 Gene3D G3DSA:3.40.50.2300 232 361 9.8E-74 T 11-10-2018 VV93_v1c31390 f492cf6c573f002cc54a70fe412964c8 408 Pfam PF00356 Bacterial regulatory proteins, lacI family 75 120 9.1E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c39140 c5e739a5652d216ed5fb73cabb5545f6 167 Gene3D G3DSA:2.180.10.10 1 66 1.8E-28 T 11-10-2018 VV93_v1c39140 c5e739a5652d216ed5fb73cabb5545f6 167 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 4 66 9.9E-29 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VV93_v1c39140 c5e739a5652d216ed5fb73cabb5545f6 167 PRINTS PR00394 RHS protein signature 34 53 1.4E-11 T 11-10-2018 IPR001826 RHS protein VV93_v1c39140 c5e739a5652d216ed5fb73cabb5545f6 167 PRINTS PR00394 RHS protein signature 11 31 1.4E-11 T 11-10-2018 IPR001826 RHS protein VV93_v1c02170 13caa315a99dbfb1cb7ae2b65a48031b 467 Pfam PF00860 Permease family 24 416 3.1E-98 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c02170 13caa315a99dbfb1cb7ae2b65a48031b 467 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 446 8.2E-127 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VV93_v1c02170 13caa315a99dbfb1cb7ae2b65a48031b 467 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 364 384 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VV93_v1c02170 13caa315a99dbfb1cb7ae2b65a48031b 467 TIGRFAM TIGR03173 pbuX: xanthine permease 29 448 2.6E-132 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PIRSF PIRSF036893 1 171 3.2E-45 T 11-10-2018 IPR022271 Lipocalin, ApoD type VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 ProSitePatterns PS00213 Lipocalin signature. 28 41 - T 11-10-2018 IPR022272 Lipocalin family conserved site VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 29 43 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 99 113 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 159 169 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 46 62 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 132 143 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 PRINTS PR01171 Bacterial lipocalin signature 65 74 1.6E-35 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 SUPERFAMILY SSF50814 4 170 2.03E-52 T 11-10-2018 IPR012674 Calycin VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 Pfam PF08212 Lipocalin-like domain 30 170 6.2E-42 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain VV93_v1c33000 077fa4055bb9f92b1c3fa7bb745b7ca5 171 Gene3D G3DSA:2.40.128.20 8 171 4.1E-53 T 11-10-2018 IPR012674 Calycin VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 Gene3D G3DSA:3.40.50.2300 11 143 6.2E-20 T 11-10-2018 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 SUPERFAMILY SSF46894 145 211 4.42E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 Gene3D G3DSA:1.10.10.10 145 214 3.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 5.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 5.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 5.9E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 SMART SM00421 152 209 8.2E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c26760 ab3338494e0afd1fd6da17ae9daeeda5 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 4.0E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 Pfam PF07730 Histidine kinase 304 367 3.3E-11 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 SMART SM00387 407 499 3.3E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 SUPERFAMILY SSF55874 372 497 2.36E-14 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 Gene3D G3DSA:3.30.565.10 371 498 1.8E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 Pfam PF05231 MASE1 15 276 7.9E-20 T 11-10-2018 IPR007895 MASE1 VV93_v1c40050 1805c8a23026377eedbc73ffd47a65db 499 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 468 1.3E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c25820 10f401e1337f1fcbaf6cc986feb0a540 185 Pfam PF02325 YGGT family 10 77 3.7E-19 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 VV93_v1c25820 10f401e1337f1fcbaf6cc986feb0a540 185 Pfam PF02325 YGGT family 109 173 1.9E-19 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 5.3E-62 T 11-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 Pfam PF01467 Cytidylyltransferase-like 345 468 1.3E-15 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 3.6E-125 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 SUPERFAMILY SSF52374 340 471 2.61E-23 T 11-10-2018 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 SUPERFAMILY SSF53613 12 304 5.61E-58 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 Gene3D G3DSA:3.40.50.620 324 474 2.4E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 Gene3D G3DSA:3.40.1190.20 6 310 7.2E-112 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 Pfam PF00294 pfkB family carbohydrate kinase 13 302 1.4E-46 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 42.696 T 11-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 VV93_v1c05220 b40625423efb081d2dc1a20c18bf83d1 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 5.4E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 VV93_v1c24810 b7a2ac14d2fbba49cfc52206027d0e54 176 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 2.2E-72 T 11-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 VV93_v1c24810 b7a2ac14d2fbba49cfc52206027d0e54 176 Gene3D G3DSA:3.40.50.2020 1 176 1.0E-64 T 11-10-2018 VV93_v1c24810 b7a2ac14d2fbba49cfc52206027d0e54 176 Pfam PF00156 Phosphoribosyl transferase domain 14 159 4.5E-26 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c24810 b7a2ac14d2fbba49cfc52206027d0e54 176 SUPERFAMILY SSF53271 3 175 1.31E-54 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c00200 cf1f9ce510d4125e650277372e9016bc 485 Pfam PF02386 Cation transport protein 39 477 3.7E-91 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VV93_v1c00200 cf1f9ce510d4125e650277372e9016bc 485 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 468 1.9E-116 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VV93_v1c00200 cf1f9ce510d4125e650277372e9016bc 485 PIRSF PIRSF006247 1 485 1.7E-177 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VV93_v1c14620 09e70b9d2d4175a3f590ad815a0992c7 342 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 257 3.8E-31 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c14620 09e70b9d2d4175a3f590ad815a0992c7 342 Gene3D G3DSA:3.40.190.10 28 257 1.5E-51 T 11-10-2018 VV93_v1c14620 09e70b9d2d4175a3f590ad815a0992c7 342 SMART SM00062 38 267 2.1E-56 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c14620 09e70b9d2d4175a3f590ad815a0992c7 342 Gene3D G3DSA:3.40.190.10 130 225 1.5E-51 T 11-10-2018 VV93_v1c14620 09e70b9d2d4175a3f590ad815a0992c7 342 SUPERFAMILY SSF53850 29 259 2.45E-50 T 11-10-2018 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 Pfam PF03167 Uracil DNA glycosylase superfamily 53 207 2.7E-24 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 6.9E-88 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 Gene3D G3DSA:3.40.470.10 1 225 4.9E-105 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 SMART SM00986 49 210 6.9E-41 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 SMART SM00987 49 210 6.9E-41 T 11-10-2018 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 SUPERFAMILY SSF52141 5 222 2.05E-96 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.209 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c05950 54823b5d5c96c26e3782e287e4800203 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 11-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 SUPERFAMILY SSF53850 41 209 3.57E-23 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Gene3D G3DSA:3.40.190.10 99 184 4.8E-18 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Gene3D G3DSA:3.40.190.10 333 432 8.3E-22 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Gene3D G3DSA:3.40.190.10 41 194 4.8E-18 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 SUPERFAMILY SSF53850 252 465 1.13E-25 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Pfam PF00990 Diguanylate cyclase, GGDEF domain 509 653 1.8E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 SMART SM00062 26 220 3.4E-8 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 SUPERFAMILY SSF55073 513 652 1.88E-27 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 185 5.1E-19 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 505 653 1.7E-27 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 SMART SM00267 497 656 5.2E-23 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Gene3D G3DSA:3.40.190.10 254 457 8.3E-22 T 11-10-2018 VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 255 436 4.3E-21 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c10590 23b5dda300bc783073441895508dddb2 657 Gene3D G3DSA:3.30.70.270 502 655 1.0E-31 T 11-10-2018 VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 TIGRFAM TIGR02249 integrase_gron: integron integrase 5 320 2.3E-143 T 11-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 Gene3D G3DSA:1.10.443.10 95 310 6.6E-70 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 8 87 1.5E-22 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 SUPERFAMILY SSF56349 100 315 2.33E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 Gene3D G3DSA:1.10.150.130 1 94 1.7E-28 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c17010 415ce181aa83ee4c3097381f21c3b212 320 Pfam PF00589 Phage integrase family 105 306 3.2E-45 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c11040 4e07e0b60a5e35722bd510ccbcd48a04 144 Pfam PF10952 Protein of unknown function (DUF2753) 5 144 1.7E-72 T 11-10-2018 IPR020206 Uncharacterised protein family, VP2110 VV93_v1c11040 4e07e0b60a5e35722bd510ccbcd48a04 144 ProDom PD087558 YRN2_VIBPA ORF2 VV1184 VV13101 MOTY 3'REGION VC1009 VP2110 1 143 6.0E-72 T 11-10-2018 IPR020206 Uncharacterised protein family, VP2110 VV93_v1c22000 af6d2ace2e832e9ab4aadee9f6f535bf 95 PIRSF PIRSF037266 1 94 3.5E-42 T 11-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VV93_v1c22000 af6d2ace2e832e9ab4aadee9f6f535bf 95 Pfam PF09904 Winged helix-turn helix 4 91 1.2E-38 T 11-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 VV93_v1c22000 af6d2ace2e832e9ab4aadee9f6f535bf 95 Gene3D G3DSA:1.10.10.10 2 95 1.7E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 552 20.133 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Gene3D G3DSA:3.40.50.2030 383 551 4.1E-60 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Gene3D G3DSA:3.40.50.2030 237 382 6.3E-63 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Gene3D G3DSA:1.20.1270.20 1 143 1.8E-37 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 PIRSF PIRSF000076 1 553 1.3E-240 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 551 3.3E-224 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Gene3D G3DSA:1.20.1270.20 153 235 8.4E-28 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 SUPERFAMILY SSF56821 1 551 1.83E-192 T 11-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 VV93_v1c13190 e604273dcce33fd7e117e86d1af9e215 553 Pfam PF03063 Prismane/CO dehydrogenase family 1 547 4.9E-162 T 11-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 Pfam PF12833 Helix-turn-helix domain 165 239 1.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 SUPERFAMILY SSF46689 140 188 9.86E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 192 235 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 Gene3D G3DSA:1.10.10.60 188 241 4.6E-20 T 11-10-2018 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 SMART SM00342 155 239 1.8E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 208 223 4.4E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 239 4.4E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 SUPERFAMILY SSF46689 192 239 1.84E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c23830 cafc0a948ef51dda7366f3d5174d6739 242 Gene3D G3DSA:1.10.10.60 135 187 1.6E-9 T 11-10-2018 VV93_v1c29160 c4555981726f3cbff4c91816ba3435a9 257 Pfam PF09836 Putative DNA-binding domain 5 96 1.2E-21 T 11-10-2018 IPR018640 Putative DNA-binding domain, bacteria VV93_v1c05010 e850614d4f4a254cba768c11ce6f61f8 242 Gene3D G3DSA:3.30.420.10 57 218 2.8E-15 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c05010 e850614d4f4a254cba768c11ce6f61f8 242 Pfam PF00665 Integrase core domain 57 165 3.3E-21 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c05010 e850614d4f4a254cba768c11ce6f61f8 242 SUPERFAMILY SSF53098 57 211 5.18E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 SUPERFAMILY SSF53720 3 449 4.32E-124 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 Pfam PF00171 Aldehyde dehydrogenase family 9 458 2.3E-122 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 3 484 7.9E-230 T 11-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 Gene3D G3DSA:3.40.309.10 247 436 7.8E-142 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 Gene3D G3DSA:3.40.605.10 7 448 7.8E-142 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 485 56.921 T 11-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 VV93_v1c27800 7285a40459a31c3c2eaa41e4f0f597f8 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 Gene3D G3DSA:1.20.1600.10 23 440 1.2E-115 T 11-10-2018 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 Pfam PF02321 Outer membrane efflux protein 25 214 1.3E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 Pfam PF02321 Outer membrane efflux protein 238 423 9.4E-33 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 23 435 9.0E-105 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 SUPERFAMILY SSF56954 1 429 1.7E-91 T 11-10-2018 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 PIRSF PIRSF001892 22 430 5.0E-50 T 11-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 VV93_v1c05230 1f5831433ca3bcae1be0ada7672c7b14 441 PIRSF PIRSF001892 1 98 7.7E-8 T 11-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 SMART SM00304 222 276 6.0E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 336 516 1.1E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 Gene3D G3DSA:3.30.450.20 30 200 5.6E-36 T 11-10-2018 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 SMART SM01049 44 130 3.8E-19 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 Gene3D G3DSA:1.10.287.950 221 553 1.2E-69 T 11-10-2018 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 418 447 7.8E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 305 334 7.8E-6 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 Pfam PF17200 Single Cache domain 2 48 188 7.2E-33 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 SMART SM00283 291 552 1.9E-71 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c30310 574686d0bcc31a62525b64bfa367bd27 553 SUPERFAMILY SSF58104 244 553 1.01E-74 T 11-10-2018 VV93_v1c33570 240635018e4527f07b78bb647d13295c 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 306 1.5E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c33570 240635018e4527f07b78bb647d13295c 310 Gene3D G3DSA:1.10.3720.10 87 309 6.1E-32 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33570 240635018e4527f07b78bb647d13295c 310 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 33 307 5.1E-92 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 VV93_v1c33570 240635018e4527f07b78bb647d13295c 310 SUPERFAMILY SSF161098 35 304 9.03E-35 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c42780 3073b79ef1fbf3f55f214f93ee71d699 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 257 3.4E-10 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42780 3073b79ef1fbf3f55f214f93ee71d699 261 SUPERFAMILY SSF53850 22 257 1.09E-23 T 11-10-2018 VV93_v1c42780 3073b79ef1fbf3f55f214f93ee71d699 261 Gene3D G3DSA:3.40.190.10 121 215 1.9E-12 T 11-10-2018 VV93_v1c42780 3073b79ef1fbf3f55f214f93ee71d699 261 Gene3D G3DSA:3.40.190.10 36 247 1.9E-12 T 11-10-2018 VV93_v1c14860 39f62be89cf5b839ad11425416076171 211 Pfam PF13505 Outer membrane protein beta-barrel domain 8 178 8.0E-7 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c14860 39f62be89cf5b839ad11425416076171 211 SUPERFAMILY SSF56925 29 180 8.63E-5 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.713 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.3E-63 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 2.6E-53 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 11-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 Gene3D G3DSA:1.10.520.20 2 106 2.2E-37 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 SUPERFAMILY SSF47928 4 105 2.62E-28 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 4.6E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 4.6E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 4.6E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 4.6E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29760 c7d286438abad2d6719cfea0e1aa8e3e 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 4.6E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 SMART SM00411 8 97 4.3E-43 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 SUPERFAMILY SSF47729 8 97 1.77E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 PRINTS PR01727 Prokaryotic integration host factor signature 81 95 9.0E-21 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 PRINTS PR01727 Prokaryotic integration host factor signature 47 62 9.0E-21 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 PRINTS PR01727 Prokaryotic integration host factor signature 65 78 9.0E-21 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 Gene3D G3DSA:4.10.520.10 8 97 7.1E-36 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 53 72 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 VV93_v1c10280 291513ee541463de54e436d602b8bc25 97 Pfam PF00216 Bacterial DNA-binding protein 8 97 3.1E-33 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 VV93_v1c28500 c1130aec27799337fab5d61dac1bcb1e 211 Pfam PF00929 Exonuclease 31 193 1.0E-19 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c28500 c1130aec27799337fab5d61dac1bcb1e 211 Gene3D G3DSA:3.30.420.10 23 200 1.1E-33 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c28500 c1130aec27799337fab5d61dac1bcb1e 211 SUPERFAMILY SSF53098 27 198 1.77E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c28500 c1130aec27799337fab5d61dac1bcb1e 211 SMART SM00479 29 202 3.3E-24 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 SUPERFAMILY SSF52210 239 385 9.42E-55 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.431 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 PIRSF PIRSF001554 1 388 3.7E-155 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Pfam PF00549 CoA-ligase 262 382 1.2E-25 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 5.8E-174 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 SUPERFAMILY SSF56059 1 238 1.77E-79 T 11-10-2018 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Gene3D G3DSA:3.30.470.20 1 234 4.3E-92 T 11-10-2018 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Gene3D G3DSA:3.40.50.261 240 388 8.0E-58 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Pfam PF08442 ATP-grasp domain 2 203 2.6E-79 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 VV93_v1c09570 aa7eef59fd434c8c2fd6420efe697e38 388 Gene3D G3DSA:3.30.1490.20 21 104 4.3E-92 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c18330 a590465a3649a53c9b2070c892a6c485 158 Pfam PF00072 Response regulator receiver domain 7 125 9.0E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18330 a590465a3649a53c9b2070c892a6c485 158 Gene3D G3DSA:3.40.50.2300 1 134 1.2E-22 T 11-10-2018 VV93_v1c18330 a590465a3649a53c9b2070c892a6c485 158 SUPERFAMILY SSF52172 1 133 3.7E-23 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c18330 a590465a3649a53c9b2070c892a6c485 158 SMART SM00448 4 125 2.6E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 Gene3D G3DSA:3.40.50.150 6 357 2.4E-54 T 11-10-2018 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 358 5.2E-40 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 126 140 1.2E-12 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 173 186 1.2E-12 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 1.2E-12 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 Pfam PF00145 C-5 cytosine-specific DNA methylase 4 361 1.1E-41 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 Gene3D G3DSA:3.90.120.10 169 354 2.4E-54 T 11-10-2018 VV93_v1c06640 239655d4ef8acb1918ce0bdebb488a15 375 SUPERFAMILY SSF53335 3 369 1.16E-57 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 SUPERFAMILY SSF56601 211 821 8.85E-117 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Pfam PF00905 Penicillin binding protein transpeptidase domain 438 709 1.3E-26 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Gene3D G3DSA:3.40.710.10 419 811 5.6E-94 T 11-10-2018 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Pfam PF17092 Penicillin-binding protein OB-like domain 317 435 2.6E-31 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Gene3D G3DSA:3.40.710.10 243 330 2.8E-9 T 11-10-2018 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 SUPERFAMILY SSF53955 43 255 5.06E-77 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Gene3D G3DSA:1.10.3810.10 48 242 3.0E-77 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 768 1.5E-168 T 11-10-2018 VV93_v1c27240 22ce1c25b109cecbf4633ba31be3b4ca 837 Pfam PF00912 Transglycosylase 55 229 5.9E-63 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 Pfam PF13353 4Fe-4S single cluster domain 16 137 3.4E-20 T 11-10-2018 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 Gene3D G3DSA:3.20.20.70 2 246 2.7E-103 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 PIRSF PIRSF000371 44 244 1.6E-44 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 PIRSF PIRSF000371 2 47 1.0E-10 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 SUPERFAMILY SSF102114 23 220 2.35E-29 T 11-10-2018 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 1.6E-107 T 11-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 Pfam PF04055 Radical SAM superfamily 24 178 7.4E-32 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c20550 cc3046027109f8b311c07d38279db41b 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Pfam PF06689 ClpX C4-type zinc finger 14 51 1.2E-20 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 396 2.2E-15 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 312 2.6E-48 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 SMART SM00382 113 266 2.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 414 3.7E-210 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 SMART SM00994 13 52 1.0E-24 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Gene3D G3DSA:3.40.50.300 59 317 3.6E-108 T 11-10-2018 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 SUPERFAMILY SSF57716 14 49 5.84E-12 T 11-10-2018 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 SMART SM01086 319 414 7.7E-34 T 11-10-2018 IPR019489 Clp ATPase, C-terminal VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Gene3D G3DSA:3.30.50.30 2 53 1.4E-26 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 SUPERFAMILY SSF52540 63 404 7.34E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 5 417 53.477 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 VV93_v1c10260 e141d84fd34d7cddf77908c2905484c9 426 Gene3D G3DSA:1.10.8.60 318 426 3.1E-41 T 11-10-2018 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 Gene3D G3DSA:3.40.190.10 164 263 6.3E-38 T 11-10-2018 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 Pfam PF03466 LysR substrate binding domain 90 294 5.2E-24 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 Gene3D G3DSA:1.10.10.10 7 93 1.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 Gene3D G3DSA:3.40.190.10 103 290 6.3E-38 T 11-10-2018 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 SUPERFAMILY SSF53850 91 293 1.28E-25 T 11-10-2018 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 6.9E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32010 2444c2723362960eba4f7fd259332c8c 297 SUPERFAMILY SSF46785 7 80 2.73E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 PRINTS PR00603 Cytochrome C1 signature 105 129 9.6E-8 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 PRINTS PR00603 Cytochrome C1 signature 191 210 9.6E-8 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 PRINTS PR00603 Cytochrome C1 signature 42 61 9.6E-8 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 PRINTS PR00603 Cytochrome C1 signature 210 225 9.6E-8 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 Gene3D G3DSA:1.10.760.10 26 210 1.4E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 Pfam PF02167 Cytochrome C1 family 34 244 1.5E-17 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 VV93_v1c05390 6abf5d17a6d6bb8ce31404d08ce0832e 245 SUPERFAMILY SSF46626 17 208 5.5E-50 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 378 2.5E-7 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Pfam PF08245 Mur ligase middle domain 113 284 1.3E-28 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Gene3D G3DSA:3.40.50.720 6 96 1.0E-18 T 11-10-2018 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 SUPERFAMILY SSF53244 304 441 3.3E-43 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Gene3D G3DSA:3.90.190.20 305 438 8.2E-39 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 SUPERFAMILY SSF53623 98 302 1.83E-53 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 441 32.397 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 SUPERFAMILY SSF51984 8 97 2.62E-16 T 11-10-2018 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 9 439 5.6E-131 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 VV93_v1c05550 b88b04de4806ad34a4ec5d05ca131077 442 Gene3D G3DSA:3.40.1190.10 97 304 2.3E-66 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 Pfam PF00563 EAL domain 503 735 6.1E-74 T 11-10-2018 IPR001633 EAL domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 SUPERFAMILY SSF141868 503 745 1.11E-87 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 Pfam PF00990 Diguanylate cyclase, GGDEF domain 327 483 1.5E-41 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 SMART SM01079 71 248 3.4E-40 T 11-10-2018 IPR006189 CHASE domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 Pfam PF03924 CHASE domain 133 235 2.5E-16 T 11-10-2018 IPR006189 CHASE domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 Gene3D G3DSA:3.30.70.270 321 499 3.5E-51 T 11-10-2018 VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 SMART SM00052 497 740 1.5E-108 T 11-10-2018 IPR001633 EAL domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 SMART SM00267 316 487 2.0E-50 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 Gene3D G3DSA:3.20.20.450 500 747 5.0E-94 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 SUPERFAMILY SSF55073 332 488 1.8E-45 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c00060 e678d27ee7739a2f96113a7cfcca18f3 753 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 323 485 4.8E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c22370 7a4c2e2f2707602d7234eb75c1a4542a 403 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 18 249 2.7E-67 T 11-10-2018 IPR018642 Protein of unknown function DUF2066 VV93_v1c38020 a892be48b826f239da150b0124ae8806 236 Gene3D G3DSA:3.30.870.10 3 143 8.4E-8 T 11-10-2018 VV93_v1c38020 a892be48b826f239da150b0124ae8806 236 Pfam PF13091 PLD-like domain 15 130 1.9E-7 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 VV93_v1c38020 a892be48b826f239da150b0124ae8806 236 SUPERFAMILY SSF56024 10 139 2.59E-8 T 11-10-2018 VV93_v1c09590 42f83ed3ce427a4788cf04e6c74ba35a 261 Pfam PF00950 ABC 3 transport family 1 255 3.6E-75 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 VV93_v1c09590 42f83ed3ce427a4788cf04e6c74ba35a 261 Gene3D G3DSA:1.10.3470.10 6 259 5.9E-7 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c09590 42f83ed3ce427a4788cf04e6c74ba35a 261 SUPERFAMILY SSF81345 2 256 2.62E-39 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 Pfam PF04055 Radical SAM superfamily 109 280 7.9E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 Gene3D G3DSA:1.10.150.530 1 67 3.3E-26 T 11-10-2018 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 359 7.7E-161 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 5 353 72.355 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 SUPERFAMILY SSF102114 105 332 1.7E-12 T 11-10-2018 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 PIRSF PIRSF006004 3 366 4.1E-144 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 VV93_v1c07100 7cbb306a1615624d1cc5507f609234d7 374 Gene3D G3DSA:3.20.20.70 68 338 7.0E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 Gene3D G3DSA:1.10.287.110 265 334 1.8E-10 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 SUPERFAMILY SSF46565 275 331 7.98E-12 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 Pfam PF08238 Sel1 repeat 74 107 0.012 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 Pfam PF08238 Sel1 repeat 38 71 0.098 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 Pfam PF08238 Sel1 repeat 110 139 5.8 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 SMART SM00671 72 107 4.8E-4 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 SMART SM00671 108 143 110.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 SMART SM00671 37 71 11.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 Gene3D G3DSA:1.25.40.10 15 201 6.0E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c17200 511b25253f24e61de2442e6caf65512a 334 SUPERFAMILY SSF81901 23 144 8.37E-18 T 11-10-2018 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 Pfam PF00155 Aminotransferase class I and II 43 377 5.4E-50 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 5 382 43.442 T 11-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 22 378 4.9E-130 T 11-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 Gene3D G3DSA:3.40.640.10 59 285 5.3E-118 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 Gene3D G3DSA:3.90.1150.10 43 375 5.3E-118 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c12420 7dbd66c5c574550c1c768b4ed69c211a 385 SUPERFAMILY SSF53383 6 378 2.64E-97 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c10430 c4ea9913a5f10e4ec50ec1f714e75268 311 Pfam PF03601 Conserved hypothetical protein 698 25 291 2.4E-54 T 11-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 SUPERFAMILY SSF54631 154 274 1.52E-24 T 11-10-2018 VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Gene3D G3DSA:2.60.120.10 5 141 3.9E-12 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 SMART SM00116 230 277 2.3E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 SMART SM00116 165 213 4.9 T 11-10-2018 IPR000644 CBS domain VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 475 618 1.7E-44 T 11-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Pfam PF00571 CBS domain 158 208 2.9E-4 T 11-10-2018 IPR000644 CBS domain VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Pfam PF00571 CBS domain 224 273 2.8E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Pfam PF03445 Putative nucleotidyltransferase DUF294 303 436 1.4E-46 T 11-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 Gene3D G3DSA:3.10.580.10 149 309 3.7E-26 T 11-10-2018 VV93_v1c43100 e13f89a714916fee6d406ca64f97ddd3 621 SUPERFAMILY SSF51206 11 143 1.83E-14 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c06530 5d778f7e544b18d69dd6d7df02113fed 414 Pfam PF00589 Phage integrase family 221 385 8.7E-30 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c06530 5d778f7e544b18d69dd6d7df02113fed 414 Gene3D G3DSA:3.30.160.390 10 114 1.5E-12 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c06530 5d778f7e544b18d69dd6d7df02113fed 414 Pfam PF13356 Arm DNA-binding domain 10 105 1.2E-15 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c06530 5d778f7e544b18d69dd6d7df02113fed 414 SUPERFAMILY SSF56349 113 389 8.24E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c06530 5d778f7e544b18d69dd6d7df02113fed 414 Gene3D G3DSA:1.10.443.10 216 405 7.4E-36 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c13600 77d32ee0c7862cededfaae8237993792 165 Gene3D G3DSA:3.40.50.2300 3 143 2.3E-17 T 11-10-2018 VV93_v1c13600 77d32ee0c7862cededfaae8237993792 165 SUPERFAMILY SSF52172 1 142 8.11E-20 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c13600 77d32ee0c7862cededfaae8237993792 165 SMART SM00448 4 125 3.7E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c13600 77d32ee0c7862cededfaae8237993792 165 Pfam PF00072 Response regulator receiver domain 6 126 1.2E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c22080 43384830685ae4a2da3e80d960db2a04 117 Pfam PF00578 AhpC/TSA family 7 109 1.2E-32 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 VV93_v1c22080 43384830685ae4a2da3e80d960db2a04 117 Gene3D G3DSA:3.40.30.10 1 116 9.4E-37 T 11-10-2018 VV93_v1c22080 43384830685ae4a2da3e80d960db2a04 117 SUPERFAMILY SSF52833 1 112 1.23E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Gene3D G3DSA:3.40.50.2300 12 131 6.7E-18 T 11-10-2018 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SUPERFAMILY SSF52172 16 135 7.97E-21 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SUPERFAMILY SSF52172 136 273 1.21E-31 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Pfam PF00990 Diguanylate cyclase, GGDEF domain 267 412 6.2E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Gene3D G3DSA:3.30.70.270 265 416 2.7E-40 T 11-10-2018 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SMART SM00448 15 127 3.7E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SMART SM00448 136 250 2.7E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Pfam PF00072 Response regulator receiver domain 139 247 9.7E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Pfam PF00072 Response regulator receiver domain 17 116 8.0E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 265 414 5.9E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SMART SM00267 256 416 1.2E-41 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 Gene3D G3DSA:3.40.50.2300 132 264 1.2E-31 T 11-10-2018 VV93_v1c23000 cc106d8cc7fd0410dab821c986d3b2f2 416 SUPERFAMILY SSF55073 272 414 4.39E-35 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 ProSitePatterns PS01125 ROK family signature. 130 157 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 Gene3D G3DSA:3.30.420.40 119 271 4.8E-73 T 11-10-2018 VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 1 291 48.799 T 11-10-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 Pfam PF00480 ROK family 4 285 4.8E-58 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 Gene3D G3DSA:3.30.420.40 5 284 4.8E-73 T 11-10-2018 VV93_v1c41310 abd9cbd4a10f90c18c9fc5ba9def7189 293 SUPERFAMILY SSF53067 1 287 2.76E-47 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SMART SM00646 229 387 7.4E-61 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SUPERFAMILY SSF54106 471 517 5.62E-9 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Gene3D G3DSA:2.60.40.3500 23 136 5.2E-24 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 169 387 9.7E-49 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Gene3D G3DSA:3.40.630.40 155 397 4.8E-68 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Pfam PF11741 AMIN domain 32 134 8.7E-16 T 11-10-2018 IPR021731 AMIN domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SUPERFAMILY SSF54106 407 451 9.29E-10 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SUPERFAMILY SSF53187 167 390 8.79E-52 T 11-10-2018 VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Pfam PF01476 LysM domain 474 515 2.7E-10 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Pfam PF01476 LysM domain 409 450 7.7E-13 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Pfam PF01476 LysM domain 527 569 4.9E-14 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SMART SM00257 526 569 5.6E-15 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SMART SM00257 473 516 4.7E-12 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SMART SM00257 408 451 3.1E-13 T 11-10-2018 IPR018392 LysM domain VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Gene3D G3DSA:3.10.350.10 520 571 3.8E-16 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Gene3D G3DSA:3.10.350.10 399 458 1.7E-14 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 Gene3D G3DSA:3.10.350.10 469 519 5.1E-13 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c28020 9eda2faa9c4a4d75cd18acfcd5591904 571 SUPERFAMILY SSF54106 526 569 1.96E-10 T 11-10-2018 VV93_v1c29550 4dcf2cd5d901b96dd8e5e77a4d9c1bf0 88 Gene3D G3DSA:1.10.1580.20 1 88 1.8E-43 T 11-10-2018 IPR038134 YihD-like superfamily VV93_v1c29550 4dcf2cd5d901b96dd8e5e77a4d9c1bf0 88 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 4.0E-40 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 VV93_v1c29550 4dcf2cd5d901b96dd8e5e77a4d9c1bf0 88 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 3.7E-45 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 VV93_v1c02510 4ae5a75c04ae75c0a418f5adab6c81b0 235 Pfam PF06992 Replication protein P 16 130 6.5E-16 T 11-10-2018 IPR009731 Replication P GO:0006270 VV93_v1c27720 90c29a919cc3f131cd2ebf88ea853091 192 Pfam PF02525 Flavodoxin-like fold 13 179 3.1E-42 T 11-10-2018 IPR003680 Flavodoxin-like fold VV93_v1c27720 90c29a919cc3f131cd2ebf88ea853091 192 Gene3D G3DSA:3.40.50.360 12 184 1.0E-53 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c27720 90c29a919cc3f131cd2ebf88ea853091 192 SUPERFAMILY SSF52218 12 185 5.45E-47 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c27720 90c29a919cc3f131cd2ebf88ea853091 192 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 8 189 47.716 T 11-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 144 260 1.8E-35 T 11-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 SMART SM00028 217 250 0.0034 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 SMART SM00028 181 214 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Pfam PF13432 Tetratricopeptide repeat 155 207 8.9E-9 T 11-10-2018 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Gene3D G3DSA:1.20.5.110 46 120 4.5E-22 T 11-10-2018 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 5 260 17.067 T 11-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Pfam PF07719 Tetratricopeptide repeat 217 249 1.2E-5 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Gene3D G3DSA:1.25.40.10 143 260 4.6E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 Pfam PF16331 TolA binding protein trimerisation 50 119 1.3E-24 T 11-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 VV93_v1c19830 2251775bb7dbf11d8f7d9156b16db85a 260 SUPERFAMILY SSF48452 143 256 4.38E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 167 5.0E-44 T 11-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 SUPERFAMILY SSF56059 268 476 1.54E-40 T 11-10-2018 VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 Gene3D G3DSA:3.30.470.20 361 473 1.0E-18 T 11-10-2018 VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 Gene3D G3DSA:3.30.1490.20 293 359 1.0E-5 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 Pfam PF08443 RimK-like ATP-grasp domain 277 455 8.4E-10 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 VV93_v1c23450 5b78d1959ed83b21cff47fe9f1e6e1ea 483 Gene3D G3DSA:3.40.50.20 205 291 2.8E-6 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 Pfam PF13533 Biotin-lipoyl like 79 108 1.9E-6 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 428 443 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 329 350 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 40 63 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 443 463 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 362 386 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 386 409 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 82 102 9.4E-50 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 31 463 1.8E-131 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 SUPERFAMILY SSF56954 171 266 3.27E-5 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 ProSitePatterns PS00543 HlyD family secretion proteins signature. 428 450 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 Pfam PF13437 HlyD family secretion protein 316 426 4.2E-18 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 Gene3D G3DSA:1.20.1600.10 141 273 1.4E-5 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 Gene3D G3DSA:2.40.50.100 71 140 2.9E-6 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 Gene3D G3DSA:2.40.30.170 325 446 1.2E-10 T 11-10-2018 VV93_v1c45150 1f96fcedbe213b0e78b40764bcce2a88 463 SUPERFAMILY SSF111369 66 138 4.05E-6 T 11-10-2018 VV93_v1c33400 efe7f975f530cf9970c974663d1ca8ab 236 Gene3D G3DSA:3.40.50.1580 1 236 5.3E-76 T 11-10-2018 VV93_v1c33400 efe7f975f530cf9970c974663d1ca8ab 236 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 233 2.6E-111 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VV93_v1c33400 efe7f975f530cf9970c974663d1ca8ab 236 SUPERFAMILY SSF53167 3 234 2.88E-91 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c33400 efe7f975f530cf9970c974663d1ca8ab 236 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 51.441 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 VV93_v1c33400 efe7f975f530cf9970c974663d1ca8ab 236 Pfam PF01048 Phosphorylase superfamily 17 217 1.5E-34 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c02930 2635913053802872d1ba1350e6166da9 351 Gene3D G3DSA:3.20.20.70 2 351 2.5E-144 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c02930 2635913053802872d1ba1350e6166da9 351 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 15 349 6.9E-148 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c02930 2635913053802872d1ba1350e6166da9 351 SUPERFAMILY SSF51569 17 347 6.28E-121 T 11-10-2018 VV93_v1c02930 2635913053802872d1ba1350e6166da9 351 Pfam PF00793 DAHP synthetase I family 45 338 2.2E-92 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c02930 2635913053802872d1ba1350e6166da9 351 PIRSF PIRSF001361 1 351 1.3E-144 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 Gene3D G3DSA:3.30.70.1450 206 279 2.7E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 Gene3D G3DSA:3.30.70.1450 289 360 4.5E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 Pfam PF03600 Citrate transporter 32 518 3.4E-24 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 SUPERFAMILY SSF116726 206 283 1.31E-16 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 SUPERFAMILY SSF116726 290 349 1.2E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 Pfam PF02080 TrkA-C domain 293 349 1.3E-11 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c03830 5e939f20b599f98dc5d917fe80901837 574 Pfam PF02080 TrkA-C domain 209 276 8.6E-12 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 VV93_v1c26380 1c966a9c7e003064dcec79c2f1276f36 164 Gene3D G3DSA:3.40.630.30 6 164 1.3E-23 T 11-10-2018 VV93_v1c26380 1c966a9c7e003064dcec79c2f1276f36 164 SUPERFAMILY SSF55729 5 162 5.32E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c26380 1c966a9c7e003064dcec79c2f1276f36 164 Pfam PF13508 Acetyltransferase (GNAT) domain 57 142 6.9E-13 T 11-10-2018 IPR000182 GNAT domain VV93_v1c40650 338031c05c7680a2d7cb8cfea902ac94 339 Gene3D G3DSA:2.40.160.10 22 339 7.6E-46 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c40650 338031c05c7680a2d7cb8cfea902ac94 339 SUPERFAMILY SSF56935 22 338 2.12E-46 T 11-10-2018 VV93_v1c22260 620a6a5c9dfe849613dba0fa5f402491 282 SUPERFAMILY SSF52540 6 96 2.25E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18290 cec1d0dd3e26d9e465622c764a4b7c22 292 Pfam PF03547 Membrane transport protein 172 284 8.2E-8 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 VV93_v1c18290 cec1d0dd3e26d9e465622c764a4b7c22 292 Pfam PF03547 Membrane transport protein 5 152 1.4E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 VV93_v1c34160 da89c5cce24f237065c7a6e75b06c6f3 92 SUPERFAMILY SSF54534 6 90 3.79E-24 T 11-10-2018 VV93_v1c34160 da89c5cce24f237065c7a6e75b06c6f3 92 Gene3D G3DSA:3.10.50.40 2 92 1.5E-31 T 11-10-2018 VV93_v1c34160 da89c5cce24f237065c7a6e75b06c6f3 92 Pfam PF13616 PPIC-type PPIASE domain 13 89 4.2E-19 T 11-10-2018 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 SUPERFAMILY SSF55604 399 472 8.37E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 Gene3D G3DSA:3.30.1360.60 394 475 7.7E-29 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 Pfam PF02378 Phosphotransferase system, EIIC 13 318 1.5E-74 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 412 429 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 Pfam PF00367 phosphotransferase system, EIIB 402 434 7.3E-12 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 473 1.1E-196 T 11-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 VV93_v1c12000 ab786f3da050e2288c879e9dabb1edcc 476 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 377 458 2.6E-20 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 VV93_v1c17830 957d3b099dccf2b49033aa8b6b5b3e3f 176 SUPERFAMILY SSF53098 4 175 3.51E-30 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c17830 957d3b099dccf2b49033aa8b6b5b3e3f 176 Gene3D G3DSA:3.30.420.10 1 176 4.3E-37 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c17830 957d3b099dccf2b49033aa8b6b5b3e3f 176 Pfam PF00929 Exonuclease 7 171 2.6E-12 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c17830 957d3b099dccf2b49033aa8b6b5b3e3f 176 SMART SM00479 5 176 1.7E-4 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c10380 c388df105d98ac835af8b915ba3634c1 156 Pfam PF00561 alpha/beta hydrolase fold 18 107 3.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c10380 c388df105d98ac835af8b915ba3634c1 156 Gene3D G3DSA:3.40.50.1820 5 156 2.5E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c10380 c388df105d98ac835af8b915ba3634c1 156 SUPERFAMILY SSF53474 13 155 9.95E-24 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 SUPERFAMILY SSF52540 9 262 5.59E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 Gene3D G3DSA:3.40.50.300 8 331 3.2E-79 T 11-10-2018 VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 Pfam PF00005 ABC transporter 35 192 3.2E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 308 1.5E-17 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 2.0E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c24510 463ce0d1583e31707b0fb43efa4e2916 331 SMART SM00382 43 241 1.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c03340 ff34f10b4a90a15d6fa8e40666337974 198 Pfam PF02397 Bacterial sugar transferase 2 176 5.4E-65 T 11-10-2018 IPR003362 Bacterial sugar transferase VV93_v1c40240 4d95becc2acb3a91e6251172140cac18 295 PIRSF PIRSF028200 14 294 1.6E-109 T 11-10-2018 IPR016875 Uncharacterised conserved protein UCP028200 VV93_v1c31660 3dfa6dc3a9cb4e4b343eb44cfbda34da 244 Pfam PF00588 SpoU rRNA Methylase family 102 236 4.6E-29 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c31660 3dfa6dc3a9cb4e4b343eb44cfbda34da 244 SUPERFAMILY SSF75217 97 243 1.05E-33 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c31660 3dfa6dc3a9cb4e4b343eb44cfbda34da 244 Gene3D G3DSA:3.30.1330.30 1 93 9.0E-17 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like VV93_v1c31660 3dfa6dc3a9cb4e4b343eb44cfbda34da 244 Gene3D G3DSA:3.40.1280.10 96 244 3.7E-40 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c31660 3dfa6dc3a9cb4e4b343eb44cfbda34da 244 SUPERFAMILY SSF55315 4 92 4.24E-12 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like VV93_v1c15770 3e7c5485d75194664e2e23d9eb81e890 256 Gene3D G3DSA:1.10.3720.10 4 256 5.0E-47 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c15770 3e7c5485d75194664e2e23d9eb81e890 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 251 3.0E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c15770 3e7c5485d75194664e2e23d9eb81e890 256 SUPERFAMILY SSF161098 4 254 7.1E-54 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 SMART SM00079 26 251 1.6E-4 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 Gene3D G3DSA:3.40.190.10 30 249 3.9E-72 T 11-10-2018 VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 SMART SM00062 26 252 1.0E-69 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 7 249 3.9E-82 T 11-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 49 62 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 Gene3D G3DSA:3.40.190.10 112 208 3.9E-72 T 11-10-2018 VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 SUPERFAMILY SSF53850 1 253 3.45E-71 T 11-10-2018 VV93_v1c20480 bfd5084dc4b547844514224b1175d092 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 250 4.0E-61 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c33880 0a14c84846516d73c0df37561e6bf212 161 SUPERFAMILY SSF54637 6 154 5.61E-41 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c33880 0a14c84846516d73c0df37561e6bf212 161 Gene3D G3DSA:3.10.129.10 2 161 5.3E-43 T 11-10-2018 VV93_v1c33880 0a14c84846516d73c0df37561e6bf212 161 Pfam PF03061 Thioesterase superfamily 22 96 2.4E-16 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 SUPERFAMILY SSF54826 1 101 2.28E-25 T 11-10-2018 VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 327 21.465 T 11-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 Gene3D G3DSA:3.20.20.120 100 301 7.8E-116 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 SUPERFAMILY SSF51604 103 316 3.41E-49 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 Gene3D G3DSA:3.30.390.10 3 306 7.8E-116 T 11-10-2018 IPR029017 Enolase-like, N-terminal VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 312 3.0E-108 T 11-10-2018 VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 SMART SM00922 117 214 1.8E-6 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal VV93_v1c10400 449ddc34d7e74b5ee0184843bc01fa77 329 Pfam PF13378 Enolase C-terminal domain-like 126 278 6.1E-12 T 11-10-2018 IPR029065 Enolase C-terminal domain-like VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 2.0E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 2.0E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 2.0E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 2.0E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 Gene3D G3DSA:1.10.10.10 3 102 4.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 Pfam PF01022 Bacterial regulatory protein, arsR family 12 57 4.1E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 SUPERFAMILY SSF46785 5 88 3.39E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c00890 0272060e92c6b476d0cf019e1a59b149 111 SMART SM00418 5 83 4.0E-25 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c41620 f5280ebe36c67ded5eb0cf954b4dd9b3 204 Pfam PF01810 LysE type translocator 15 202 4.5E-31 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c41620 f5280ebe36c67ded5eb0cf954b4dd9b3 204 PIRSF PIRSF006324 1 204 1.7E-41 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c04220 7edc1c76c003893d7f2785087d612f3c 321 Pfam PF01699 Sodium/calcium exchanger protein 5 143 1.4E-27 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VV93_v1c04220 7edc1c76c003893d7f2785087d612f3c 321 Pfam PF01699 Sodium/calcium exchanger protein 175 316 2.0E-29 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VV93_v1c04220 7edc1c76c003893d7f2785087d612f3c 321 Gene3D G3DSA:1.20.58.1130 8 206 3.0E-87 T 11-10-2018 VV93_v1c04220 7edc1c76c003893d7f2785087d612f3c 321 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 3 311 1.2E-83 T 11-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 VV93_v1c04220 7edc1c76c003893d7f2785087d612f3c 321 Gene3D G3DSA:1.20.1420.30 35 309 3.0E-87 T 11-10-2018 VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 SUPERFAMILY SSF81345 352 665 2.09E-65 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 Gene3D G3DSA:1.10.3470.10 13 341 4.4E-77 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 Gene3D G3DSA:1.10.3470.10 354 665 7.9E-70 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 SUPERFAMILY SSF81345 17 336 7.85E-64 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 Pfam PF01032 FecCD transport family 369 665 9.8E-68 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c44080 35ffef820b6bca07248b7c2aeb9ba395 665 Pfam PF01032 FecCD transport family 29 336 2.2E-72 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c18500 ee808f144601467ed18e844e7821cd5c 571 Pfam PF00563 EAL domain 358 567 6.4E-41 T 11-10-2018 IPR001633 EAL domain VV93_v1c18500 ee808f144601467ed18e844e7821cd5c 571 SUPERFAMILY SSF141868 353 567 4.58E-47 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c18500 ee808f144601467ed18e844e7821cd5c 571 SMART SM00052 343 571 6.5E-15 T 11-10-2018 IPR001633 EAL domain VV93_v1c18500 ee808f144601467ed18e844e7821cd5c 571 Gene3D G3DSA:3.20.20.450 351 570 3.4E-47 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c25500 78b0463e7081107316361cad78785c57 324 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 183 247 9.3E-24 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site VV93_v1c25500 78b0463e7081107316361cad78785c57 324 Gene3D G3DSA:2.40.30.160 193 313 3.3E-33 T 11-10-2018 VV93_v1c25500 78b0463e7081107316361cad78785c57 324 SUPERFAMILY SSF103025 17 237 2.67E-56 T 11-10-2018 VV93_v1c25500 78b0463e7081107316361cad78785c57 324 SUPERFAMILY SSF101790 239 322 4.84E-18 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VV93_v1c25500 78b0463e7081107316361cad78785c57 324 Gene3D G3DSA:3.30.70.1630 26 189 7.7E-42 T 11-10-2018 VV93_v1c25500 78b0463e7081107316361cad78785c57 324 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 318 43.072 T 11-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 VV93_v1c25500 78b0463e7081107316361cad78785c57 324 Pfam PF01571 Aminomethyltransferase folate-binding domain 29 153 3.8E-7 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain VV93_v1c25500 78b0463e7081107316361cad78785c57 324 Gene3D G3DSA:3.30.70.1400 29 115 7.7E-42 T 11-10-2018 VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 292 427 2.1E-51 T 11-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 SUPERFAMILY SSF103088 311 427 7.59E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 50 259 3.2E-68 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 Gene3D G3DSA:1.25.40.590 48 205 2.0E-48 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 Pfam PF09850 Type VI secretion system protein DotU 52 253 2.9E-57 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 Gene3D G3DSA:3.30.1330.60 280 432 9.3E-41 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c39380 f832f28529349bea3fb75ce851d16dda 442 Pfam PF00691 OmpA family 323 421 4.0E-14 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c03840 4bad2250fc4cba849228a2b1059a9a52 207 Pfam PF01583 Adenylylsulphate kinase 31 182 7.0E-72 T 11-10-2018 VV93_v1c03840 4bad2250fc4cba849228a2b1059a9a52 207 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 30 202 38.171 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VV93_v1c03840 4bad2250fc4cba849228a2b1059a9a52 207 SUPERFAMILY SSF52540 25 198 6.13E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c03840 4bad2250fc4cba849228a2b1059a9a52 207 Gene3D G3DSA:3.40.50.300 9 206 2.1E-79 T 11-10-2018 VV93_v1c03840 4bad2250fc4cba849228a2b1059a9a52 207 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 14 198 3.0E-83 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 Hamap MF_00720 Primosomal replication protein N [priB]. 2 100 22.252 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 Pfam PF00436 Single-strand binding protein family 3 87 8.4E-8 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 Gene3D G3DSA:2.40.50.140 1 100 1.4E-30 T 11-10-2018 VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 SUPERFAMILY SSF50249 1 98 2.5E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 3 97 1.4E-32 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 VV93_v1c27120 ae5be97997a1231d6562ea70bef35c2b 100 PIRSF PIRSF003135 1 100 1.5E-45 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 VV93_v1c19500 c30a1b6bc5c6b3cbf7a02f302cb20f26 178 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 2.2E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c19500 c30a1b6bc5c6b3cbf7a02f302cb20f26 178 Gene3D G3DSA:3.30.700.10 7 92 7.5E-12 T 11-10-2018 VV93_v1c19500 c30a1b6bc5c6b3cbf7a02f302cb20f26 178 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 3.2E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c19500 c30a1b6bc5c6b3cbf7a02f302cb20f26 178 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c19500 c30a1b6bc5c6b3cbf7a02f302cb20f26 178 SUPERFAMILY SSF54523 7 64 1.49E-12 T 11-10-2018 VV93_v1c23840 a7fc6833ef6bf63908df63bdcb2be3be 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c23840 a7fc6833ef6bf63908df63bdcb2be3be 561 Pfam PF00501 AMP-binding enzyme 24 440 5.8E-85 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c23840 a7fc6833ef6bf63908df63bdcb2be3be 561 SUPERFAMILY SSF56801 14 547 7.06E-109 T 11-10-2018 VV93_v1c23840 a7fc6833ef6bf63908df63bdcb2be3be 561 Gene3D G3DSA:3.40.50.12780 10 436 8.8E-84 T 11-10-2018 VV93_v1c32540 bbeae5f8ebe65c4816fb3d4ffda6223b 279 SUPERFAMILY SSF53613 12 272 4.21E-82 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c32540 bbeae5f8ebe65c4816fb3d4ffda6223b 279 Pfam PF08543 Phosphomethylpyrimidine kinase 21 269 4.6E-97 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VV93_v1c32540 bbeae5f8ebe65c4816fb3d4ffda6223b 279 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 14 271 5.7E-100 T 11-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 VV93_v1c32540 bbeae5f8ebe65c4816fb3d4ffda6223b 279 Gene3D G3DSA:3.40.1190.20 2 278 4.1E-103 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c07530 c45afc075473276922a032765c2692ee 397 Pfam PF14236 Domain of unknown function (DUF4338) 42 335 1.0E-57 T 11-10-2018 IPR025639 Domain of unknown function DUF4338 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 SMART SM00388 445 512 9.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 SUPERFAMILY SSF47384 440 509 4.12E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 663 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 625 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 8.6E-18 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 Pfam PF17202 Single cache domain 3 201 314 1.5E-26 T 11-10-2018 IPR033463 Single cache domain 3 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 SUPERFAMILY SSF103190 141 307 1.35E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 SUPERFAMILY SSF55874 502 664 1.83E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 SMART SM00387 555 666 5.7E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 Gene3D G3DSA:3.30.565.10 519 673 1.6E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 Gene3D G3DSA:1.10.287.130 437 510 4.4E-21 T 11-10-2018 VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 559 665 2.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c16030 36527e233c4f6942fe32370b2a91e8de 677 Pfam PF00512 His Kinase A (phospho-acceptor) domain 445 510 2.3E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c14960 a1304b9b861eeefbfc2a32bdebe2269c 256 SUPERFAMILY SSF51161 94 252 2.23E-31 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c14960 a1304b9b861eeefbfc2a32bdebe2269c 256 Gene3D G3DSA:2.160.10.10 88 254 6.3E-37 T 11-10-2018 VV93_v1c14960 a1304b9b861eeefbfc2a32bdebe2269c 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 202 233 4.3E-9 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c14960 a1304b9b861eeefbfc2a32bdebe2269c 256 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 207 235 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 PRINTS PR01021 OMPA domain signature 81 103 1.5E-16 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 PRINTS PR01021 OMPA domain signature 111 126 1.5E-16 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 PRINTS PR01021 OMPA domain signature 126 142 1.5E-16 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 Pfam PF00691 OmpA family 80 175 2.5E-22 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 Gene3D G3DSA:3.30.1330.60 54 181 4.8E-41 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 ProSitePatterns PS01068 OmpA-like domain. 113 157 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 181 30.793 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 SUPERFAMILY SSF103088 72 181 1.44E-33 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c19840 46004e9c732ca6de3281633b5daf0dc4 181 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 78 181 1.6E-44 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 VV93_v1c07370 b70f614fb84bc3a32492477202e01387 580 SUPERFAMILY SSF55729 312 458 9.0E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c07370 b70f614fb84bc3a32492477202e01387 580 SUPERFAMILY SSF69593 42 252 3.66E-12 T 11-10-2018 VV93_v1c07370 b70f614fb84bc3a32492477202e01387 580 Pfam PF01553 Acyltransferase 66 194 1.1E-5 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c07370 b70f614fb84bc3a32492477202e01387 580 Pfam PF13444 Acetyltransferase (GNAT) domain 329 430 1.2E-19 T 11-10-2018 VV93_v1c07370 b70f614fb84bc3a32492477202e01387 580 SMART SM00563 74 197 1.3E-9 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 Gene3D G3DSA:1.10.357.10 1 193 2.9E-69 T 11-10-2018 VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 SUPERFAMILY SSF46689 6 81 6.98E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.7E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.7E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VV93_v1c00350 9f9753db9d10d442f56be527e4341c4a 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 6.0E-18 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c44750 b873bc0208c6d8bbbd69569a0c434e3a 158 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c44750 b873bc0208c6d8bbbd69569a0c434e3a 158 Gene3D G3DSA:3.40.930.10 1 156 3.0E-48 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c44750 b873bc0208c6d8bbbd69569a0c434e3a 158 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 152 4.2E-34 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c44750 b873bc0208c6d8bbbd69569a0c434e3a 158 SUPERFAMILY SSF55804 5 152 1.83E-32 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c42250 31670147d3f5e78ae853c777d232de57 542 Pfam PF00501 AMP-binding enzyme 47 446 5.6E-81 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c42250 31670147d3f5e78ae853c777d232de57 542 Gene3D G3DSA:3.30.300.310 442 540 3.2E-24 T 11-10-2018 VV93_v1c42250 31670147d3f5e78ae853c777d232de57 542 Gene3D G3DSA:3.40.50.12780 10 441 6.0E-114 T 11-10-2018 VV93_v1c42250 31670147d3f5e78ae853c777d232de57 542 SUPERFAMILY SSF56801 26 537 4.06E-125 T 11-10-2018 VV93_v1c42250 31670147d3f5e78ae853c777d232de57 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 530 5.3E-13 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c01120 3de18181796c5cbdc71467b3817ee58d 270 Gene3D G3DSA:3.40.50.150 11 255 7.2E-18 T 11-10-2018 VV93_v1c01120 3de18181796c5cbdc71467b3817ee58d 270 Pfam PF04072 Leucine carboxyl methyltransferase 72 226 2.5E-7 T 11-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 VV93_v1c01120 3de18181796c5cbdc71467b3817ee58d 270 PIRSF PIRSF028177 3 270 4.9E-66 T 11-10-2018 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 VV93_v1c01120 3de18181796c5cbdc71467b3817ee58d 270 SUPERFAMILY SSF53335 17 252 5.07E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c42120 444a00c339391e39e8ae3fdf062b0d0a 680 Pfam PF05787 Bacterial protein of unknown function (DUF839) 76 643 2.5E-151 T 11-10-2018 IPR008557 Protein of unknown function DUF839 VV93_v1c42120 444a00c339391e39e8ae3fdf062b0d0a 680 SUPERFAMILY SSF63829 412 644 3.92E-6 T 11-10-2018 VV93_v1c27640 779865bbb20783bcab07be1ec311974a 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 30 143 8.0E-62 T 11-10-2018 IPR013559 YheO-like VV93_v1c27640 779865bbb20783bcab07be1ec311974a 240 Pfam PF13309 HTH domain 174 231 6.4E-18 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain VV93_v1c27640 779865bbb20783bcab07be1ec311974a 240 Pfam PF08348 YheO-like PAS domain 31 139 8.7E-36 T 11-10-2018 IPR013559 YheO-like VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 4.6E-27 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 Gene3D G3DSA:3.30.1340.10 1 85 2.6E-32 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 6.5E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 6.5E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 6.5E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 SUPERFAMILY SSF55594 1 82 1.57E-26 T 11-10-2018 IPR035895 HPr-like superfamily VV93_v1c09040 d81f0ba3296863963e37c68e6253d0f6 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 1.5E-27 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like VV93_v1c38850 85ffcc87993f40b478c1ff2609ac0f9e 1040 SUPERFAMILY SSF103647 312 414 1.83E-13 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c38850 85ffcc87993f40b478c1ff2609ac0f9e 1040 Gene3D G3DSA:4.10.1080.10 345 421 4.2E-8 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c38850 85ffcc87993f40b478c1ff2609ac0f9e 1040 Gene3D G3DSA:4.10.1080.10 234 344 1.7E-10 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c09150 e9cde9347a6469c303a85bf425af73b9 304 Gene3D G3DSA:3.40.50.720 2 304 1.5E-76 T 11-10-2018 VV93_v1c09150 e9cde9347a6469c303a85bf425af73b9 304 Pfam PF08338 Domain of unknown function (DUF1731) 253 299 1.6E-15 T 11-10-2018 IPR013549 Domain of unknown function DUF1731 VV93_v1c09150 e9cde9347a6469c303a85bf425af73b9 304 SUPERFAMILY SSF51735 1 297 1.11E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c09150 e9cde9347a6469c303a85bf425af73b9 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 226 9.1E-21 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 VV93_v1c09150 e9cde9347a6469c303a85bf425af73b9 304 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 296 1.2E-102 T 11-10-2018 IPR010099 Epimerase family protein SDR39U1 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.9 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.8E-29 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 SUPERFAMILY SSF63562 1 78 7.85E-26 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 Gene3D G3DSA:3.90.940.10 1 90 9.6E-30 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 Pfam PF01192 RNA polymerase Rpb6 10 60 3.7E-18 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VV93_v1c02210 846b7357515965177ab1c139ac6f0711 90 SMART SM01409 8 61 1.3E-16 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 Gene3D G3DSA:3.40.190.10 116 212 2.0E-34 T 11-10-2018 VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 Gene3D G3DSA:3.30.70.270 286 454 6.0E-40 T 11-10-2018 VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 236 2.3E-26 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 Pfam PF00990 Diguanylate cyclase, GGDEF domain 301 449 1.3E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 SMART SM00267 289 453 9.0E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 Gene3D G3DSA:3.40.190.10 28 248 2.0E-34 T 11-10-2018 VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 SUPERFAMILY SSF55073 305 452 9.42E-37 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 SMART SM00062 31 248 3.0E-9 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 298 452 6.9E-33 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c40080 c3208dffff7f5d9ad5c9dec484420b36 457 SUPERFAMILY SSF53850 2 238 1.22E-35 T 11-10-2018 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 Pfam PF00849 RNA pseudouridylate synthase 68 200 4.9E-17 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 Gene3D G3DSA:3.30.70.1560 130 220 9.9E-49 T 11-10-2018 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 Gene3D G3DSA:3.30.70.580 70 228 9.9E-49 T 11-10-2018 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 SUPERFAMILY SSF55120 68 235 2.26E-42 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 106 120 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 72 232 2.7E-54 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 SMART SM00363 3 73 5.8E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 SUPERFAMILY SSF55174 4 96 8.92E-12 T 11-10-2018 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 Gene3D G3DSA:3.10.290.10 1 60 1.1E-19 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c11440 276f379ed29e6789512d69b5e3f815f9 320 Pfam PF01479 S4 domain 4 44 1.7E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 PIRSF PIRSF001267 1 499 1.8E-197 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 Pfam PF02541 Ppx/GppA phosphatase family 22 304 2.2E-83 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 Gene3D G3DSA:3.30.420.150 113 291 1.1E-88 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 SUPERFAMILY SSF53067 9 128 1.94E-35 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 SUPERFAMILY SSF109604 309 498 7.33E-50 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 Gene3D G3DSA:3.30.420.40 10 299 1.1E-88 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 SUPERFAMILY SSF53067 135 305 2.07E-44 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 Gene3D G3DSA:1.10.3210.10 307 499 2.6E-59 T 11-10-2018 VV93_v1c06730 d6335b6eff61f7c88f8f04a0ec651806 499 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 9 302 1.3E-100 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 Gene3D G3DSA:1.10.1520.10 3 149 5.7E-45 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 SUPERFAMILY SSF54768 108 222 4.24E-28 T 11-10-2018 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 SMART SM00358 155 223 8.9E-22 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain VV93_v1c25400 b888679212586fdca086b174896e19fc 225 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 30.378 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 Pfam PF14622 Ribonuclease-III-like 18 142 2.4E-34 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 222 3.0E-75 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 SMART SM00535 20 148 4.4E-57 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 Pfam PF00035 Double-stranded RNA binding motif 155 222 4.0E-15 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain VV93_v1c25400 b888679212586fdca086b174896e19fc 225 Gene3D G3DSA:3.30.160.20 153 224 1.9E-19 T 11-10-2018 VV93_v1c25400 b888679212586fdca086b174896e19fc 225 SUPERFAMILY SSF69065 4 158 1.1E-50 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 626 46.928 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Pfam PF00204 DNA gyrase B 218 384 2.0E-42 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 SMART SM00387 27 173 7.3E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Gene3D G3DSA:3.30.230.10 216 389 1.2E-57 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 556 618 8.2E-27 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 1.8E-123 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 623 0.0 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Gene3D G3DSA:3.30.565.10 2 215 5.5E-75 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 SUPERFAMILY SSF55874 5 215 8.75E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 SUPERFAMILY SSF54211 217 382 1.65E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 SMART SM00433 34 622 2.7E-212 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 SUPERFAMILY SSF56719 388 619 1.67E-79 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 1.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Gene3D G3DSA:3.40.50.670 390 621 2.6E-92 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 109 123 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 560 576 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 31 46 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 266 279 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 PRINTS PR00418 DNA topoisomerase II family signature 66 79 1.1E-57 T 11-10-2018 VV93_v1c05290 fbab8d9692e9e2a7085e2422d42da5c0 626 Pfam PF01751 Toprim domain 413 521 8.9E-12 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c30550 b6c91362fb217a63bb6a3fb10586d693 93 SUPERFAMILY SSF51182 1 93 1.01E-33 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c30550 b6c91362fb217a63bb6a3fb10586d693 93 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 1.2E-33 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VV93_v1c30550 b6c91362fb217a63bb6a3fb10586d693 93 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 93 25.216 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 VV93_v1c30550 b6c91362fb217a63bb6a3fb10586d693 93 Gene3D G3DSA:2.60.120.10 1 93 6.6E-36 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 4.1E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 4.1E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 SUPERFAMILY SSF46689 287 333 1.05E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 SMART SM00342 248 329 2.0E-13 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 30 195 9.6E-11 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 Gene3D G3DSA:1.10.10.60 231 334 2.0E-18 T 11-10-2018 VV93_v1c41720 e698d02984ee8c9fc3981219dcd57432 336 Pfam PF12833 Helix-turn-helix domain 255 331 3.1E-14 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c13820 ae85416b9993b0d70a3c448c496d7864 232 Pfam PF08732 HIM1 80 168 3.3E-10 T 11-10-2018 IPR014843 Protein Him1/Fmp52 VV93_v1c13820 ae85416b9993b0d70a3c448c496d7864 232 SUPERFAMILY SSF51735 6 227 3.28E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c13820 ae85416b9993b0d70a3c448c496d7864 232 Gene3D G3DSA:3.40.50.720 2 231 4.3E-53 T 11-10-2018 VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Pfam PF01471 Putative peptidoglycan binding domain 470 525 1.5E-6 T 11-10-2018 IPR002477 Peptidoglycan binding-like VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 SUPERFAMILY SSF47090 456 530 1.6E-12 T 11-10-2018 IPR036365 PGBD-like superfamily VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Gene3D G3DSA:3.40.50.300 26 184 4.2E-14 T 11-10-2018 VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Gene3D G3DSA:1.10.101.10 463 530 2.7E-27 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 SUPERFAMILY SSF52540 5 264 7.61E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Pfam PF16537 Type II secretion system protein B 653 712 7.3E-24 T 11-10-2018 IPR032389 Type II secretion system protein B VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Pfam PF13401 AAA domain 42 171 1.2E-23 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 SMART SM00382 42 195 2.7E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c05140 7b67ae4fdd3aa0682a08a54e0107b1cc 718 Gene3D G3DSA:3.90.70.10 344 462 1.7E-46 T 11-10-2018 VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Pfam PF16548 Flagellar assembly protein T, N-terminal domain 24 110 2.5E-26 T 11-10-2018 IPR032370 Flagellar assembly protein T, N-terminal VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Pfam PF16538 Flagellar assembly protein T, C-terminal domain 299 375 1.1E-27 T 11-10-2018 IPR032388 Flagellar assembly protein T, C-terminal VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Gene3D G3DSA:3.40.50.10610 114 290 1.6E-54 T 11-10-2018 VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Pfam PF16539 Flagellar assembly protein T, middle domain 115 256 7.3E-44 T 11-10-2018 IPR032386 Flagellar assembly protein T, middle domain VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Gene3D G3DSA:3.30.1660.40 24 113 5.1E-35 T 11-10-2018 IPR038180 FlgT, N-terminal domain superfamily VV93_v1c08800 c42908de7e3f215c614c72fa742bd978 377 Gene3D G3DSA:2.40.10.410 291 377 2.2E-36 T 11-10-2018 IPR038165 FlgT, C-terminal domain superfamily VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 SMART SM00382 28 210 1.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 SUPERFAMILY SSF50331 237 360 1.34E-15 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 Gene3D G3DSA:3.40.50.300 1 238 1.6E-77 T 11-10-2018 VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 Pfam PF00005 ABC transporter 20 161 1.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 Gene3D G3DSA:2.40.50.100 239 360 4.1E-14 T 11-10-2018 VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 Gene3D G3DSA:2.40.50.140 283 346 4.1E-14 T 11-10-2018 VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c31300 9dd14c53241ecf12d51919ab805aa017 365 SUPERFAMILY SSF52540 4 243 1.0E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Pfam PF14579 Helix-hairpin-helix motif 809 897 7.7E-26 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 SUPERFAMILY SSF50249 978 1066 5.31E-5 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 SUPERFAMILY SSF89550 5 263 6.87E-14 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Pfam PF02811 PHP domain 8 171 9.2E-43 T 11-10-2018 IPR004013 PHP domain GO:0003824 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1030 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Gene3D G3DSA:2.40.50.140 984 1072 1.8E-8 T 11-10-2018 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Gene3D G3DSA:1.10.10.1600 433 510 2.5E-32 T 11-10-2018 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Pfam PF01336 OB-fold nucleic acid binding domain 999 1071 3.0E-10 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Gene3D G3DSA:3.20.20.140 1 270 1.0E-91 T 11-10-2018 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 735 1.3E-175 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c22610 46cc558686a7f57cb38c500bc1ec93b3 1159 SMART SM00481 7 74 2.1E-26 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 93 126 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 13 246 2.9E-94 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 18 32 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 Gene3D G3DSA:3.30.950.10 129 251 5.8E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 16 224 1.3E-49 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 SUPERFAMILY SSF53790 12 252 5.89E-79 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38660 3168f80be0d56c95aa9be19f8fec3a08 252 Gene3D G3DSA:3.40.1010.10 11 128 1.2E-45 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 Pfam PF00990 Diguanylate cyclase, GGDEF domain 204 358 2.1E-14 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SUPERFAMILY SSF141868 378 629 2.22E-82 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 Pfam PF00563 EAL domain 381 613 8.6E-69 T 11-10-2018 IPR001633 EAL domain VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SMART SM00052 373 618 2.3E-102 T 11-10-2018 IPR001633 EAL domain VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SMART SM00267 192 363 8.8E-7 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SUPERFAMILY SSF55073 209 362 2.2E-16 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SMART SM00065 14 159 8.0E-4 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 Gene3D G3DSA:3.20.20.450 375 626 2.8E-87 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 SUPERFAMILY SSF55781 16 163 4.71E-19 T 11-10-2018 VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 Gene3D G3DSA:3.30.70.270 197 369 3.4E-18 T 11-10-2018 VV93_v1c37600 f1db05061676b362d55a25b4f3ef485b 638 Gene3D G3DSA:3.30.450.40 12 170 4.7E-10 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c26060 88040c20e81673baa2c7b579bf2793ef 443 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 16 425 3.1E-114 T 11-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 VV93_v1c26060 88040c20e81673baa2c7b579bf2793ef 443 PIRSF PIRSF006351 4 434 1.7E-148 T 11-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 VV93_v1c26060 88040c20e81673baa2c7b579bf2793ef 443 Pfam PF02378 Phosphotransferase system, EIIC 32 351 5.8E-66 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c09200 e0671f1a6342b20be9617f2915d13581 183 SUPERFAMILY SSF56300 2 163 3.48E-36 T 11-10-2018 VV93_v1c09200 e0671f1a6342b20be9617f2915d13581 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 162 1.5E-25 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 VV93_v1c09200 e0671f1a6342b20be9617f2915d13581 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 169 9.8E-33 T 11-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 VV93_v1c09200 e0671f1a6342b20be9617f2915d13581 183 Gene3D G3DSA:3.60.21.10 1 182 9.9E-63 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c00400 194a5293c8e5f705435f1c15a2b6b0d1 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 6.4E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c00400 194a5293c8e5f705435f1c15a2b6b0d1 325 Gene3D G3DSA:1.10.3720.10 84 314 2.5E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c00400 194a5293c8e5f705435f1c15a2b6b0d1 325 SUPERFAMILY SSF161098 89 302 3.79E-16 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 SUPERFAMILY SSF54534 224 361 5.95E-30 T 11-10-2018 VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 Pfam PF13616 PPIC-type PPIASE domain 262 361 9.1E-25 T 11-10-2018 VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 SUPERFAMILY SSF109998 39 242 3.73E-39 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 Gene3D G3DSA:3.10.50.40 269 363 1.2E-33 T 11-10-2018 VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 299 320 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 Pfam PF13624 SurA N-terminal domain 1 166 2.5E-50 T 11-10-2018 VV93_v1c10290 b3d85439d9cb7681cae4f6afecba6c52 619 Gene3D G3DSA:1.10.4030.30 242 370 1.2E-33 T 11-10-2018 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 SMART SM01232 129 221 7.4E-45 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 SUPERFAMILY SSF57716 217 268 3.71E-16 T 11-10-2018 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 42.521 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 268 1.5E-7 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 SUPERFAMILY SSF81624 2 134 7.72E-39 T 11-10-2018 IPR035937 MutM-like, N-terminal VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 SUPERFAMILY SSF46946 130 221 9.13E-29 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 SMART SM00898 2 115 6.6E-52 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 11-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 4.3E-30 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Gene3D G3DSA:1.10.8.50 131 269 1.0E-46 T 11-10-2018 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 4.4E-94 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 3.7E-25 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 VV93_v1c02810 5c0ad045d11075d748c09386cfc4b9b8 269 Gene3D G3DSA:3.20.190.10 2 128 9.0E-40 T 11-10-2018 IPR035937 MutM-like, N-terminal VV93_v1c08650 a056b07319c48859e99eee69740ccd9d 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 5.0E-44 T 11-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VV93_v1c08650 a056b07319c48859e99eee69740ccd9d 269 Gene3D G3DSA:1.25.40.10 174 265 8.4E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c08650 a056b07319c48859e99eee69740ccd9d 269 SUPERFAMILY SSF48452 190 263 6.78E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c08650 a056b07319c48859e99eee69740ccd9d 269 Pfam PF13371 Tetratricopeptide repeat 187 259 4.8E-24 T 11-10-2018 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 Hamap MF_00416 Flagellar P-ring protein [flgI]. 2 363 39.93 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 Pfam PF02119 Flagellar P-ring protein 22 362 1.1E-138 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 186 204 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 54 69 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 102 119 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 22 37 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 160 178 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 80 99 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 119 137 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 37 52 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c08950 e11e198f641d12b5079b2175ce4db142 363 PRINTS PR01010 Flagellar P-ring protein signature 250 262 6.9E-86 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 SUPERFAMILY SSF52540 5 252 2.32E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 Gene3D G3DSA:3.40.50.300 3 326 1.3E-90 T 11-10-2018 VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 Pfam PF00005 ABC transporter 26 181 1.2E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 SMART SM00382 34 231 1.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 3.3E-17 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c24500 1f34e21a4036735053bbfb7148ef85b2 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 317 4.5E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 SUPERFAMILY SSF53067 186 381 9.72E-66 T 11-10-2018 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Gene3D G3DSA:1.20.1270.10 523 602 5.1E-26 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 SUPERFAMILY SSF100920 383 539 4.71E-60 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Gene3D G3DSA:3.30.420.40 5 378 2.3E-167 T 11-10-2018 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 SUPERFAMILY SSF100934 534 607 3.88E-6 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Gene3D G3DSA:3.90.640.10 228 315 2.3E-167 T 11-10-2018 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 36.362 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 SUPERFAMILY SSF53067 1 182 2.49E-66 T 11-10-2018 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Pfam PF00012 Hsp70 protein 4 601 1.8E-264 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 3.8E-286 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Gene3D G3DSA:2.60.34.10 382 522 9.2E-65 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 53 61 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 197 207 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 387 406 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 364 384 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 137 157 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 333 349 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 PRINTS PR00301 70kDa heat shock protein signature 468 484 7.3E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 Gene3D G3DSA:3.30.420.40 179 365 2.3E-167 T 11-10-2018 VV93_v1c07730 db9f022f21899a17e8c4f2470e501071 636 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 436 594 6.2E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 SMART SM00267 428 596 5.6E-50 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 SUPERFAMILY SSF55073 444 594 5.34E-40 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 Pfam PF00990 Diguanylate cyclase, GGDEF domain 439 592 3.9E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 Gene3D G3DSA:1.20.1480.50 348 435 4.4E-7 T 11-10-2018 VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 SUPERFAMILY SSF158472 381 429 8.37E-5 T 11-10-2018 VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 SMART SM00304 381 433 0.001 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c43370 325220f5778da083555eab45d233cc1e 607 Gene3D G3DSA:3.30.70.270 436 601 7.7E-45 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 24 566 9.7E-287 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 PRINTS PR00397 Sirohaem Fe-binding site signature 485 503 4.7E-9 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 PRINTS PR00397 Sirohaem Fe-binding site signature 436 454 4.7E-9 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 SUPERFAMILY SSF56014 154 350 1.83E-57 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 SUPERFAMILY SSF56014 435 567 2.62E-33 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 SUPERFAMILY SSF55124 352 428 1.8E-21 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 178 337 1.2E-45 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 84 143 6.7E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 359 423 2.6E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 SUPERFAMILY SSF55124 17 150 1.08E-27 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 437 565 8.1E-5 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Gene3D G3DSA:3.30.413.10 146 354 4.5E-83 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Gene3D G3DSA:3.30.413.10 432 575 8.9E-35 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Gene3D G3DSA:3.90.480.20 21 423 4.5E-83 T 11-10-2018 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 485 501 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c26960 dc2302e07ceaba089133ad188be7fe65 578 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 15 578 58.664 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 SUPERFAMILY SSF160467 7 95 2.35E-10 T 11-10-2018 VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 Gene3D G3DSA:2.40.100.10 91 226 1.7E-44 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 SMART SM00796 6 204 9.9E-58 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 Gene3D G3DSA:3.30.1360.40 6 83 4.4E-8 T 11-10-2018 VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 7 202 5.3E-55 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D VV93_v1c37670 b666d45ba2e3d3196d124f5f0dc60abf 227 SUPERFAMILY SSF50891 92 220 3.68E-34 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 431 1.1E-192 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 Gene3D G3DSA:1.10.300.10 102 201 1.7E-107 T 11-10-2018 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 SUPERFAMILY SSF52540 3 436 9.14E-180 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 Gene3D G3DSA:3.90.170.10 267 438 6.6E-67 T 11-10-2018 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 Pfam PF00709 Adenylosuccinate synthetase 5 430 2.0E-178 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 SMART SM00788 4 431 0.0 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 438 218.847 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 VV93_v1c27940 8c87fcbb46297324807964cab455676b 438 Gene3D G3DSA:3.40.440.10 6 249 1.7E-107 T 11-10-2018 VV93_v1c22220 fffda70eb22250b59fcd4e5b113b2314 141 Pfam PF09722 Protein of unknown function (DUF2384) 89 138 1.1E-12 T 11-10-2018 IPR024467 Domain of unknown function DUF2384 VV93_v1c22220 fffda70eb22250b59fcd4e5b113b2314 141 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 15 141 1.5E-22 T 11-10-2018 IPR011979 Conserved hypothetical protein CHP02293 VV93_v1c38790 bb6800fec9c2430f4ce45454c0df845c 278 SUPERFAMILY SSF52768 44 247 1.28E-20 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily VV93_v1c38790 bb6800fec9c2430f4ce45454c0df845c 278 Gene3D G3DSA:3.40.800.10 38 214 7.0E-10 T 11-10-2018 VV93_v1c38790 bb6800fec9c2430f4ce45454c0df845c 278 Pfam PF00491 Arginase family 56 210 2.8E-5 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 SUPERFAMILY SSF54686 3 133 4.58E-53 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 7.5E-47 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 125 3.5E-57 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.624 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 4.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 4.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 4.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 4.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03530 f458c70dc0ff8e2a21cfa6d519da71f3 136 Gene3D G3DSA:3.90.1170.10 1 136 2.1E-54 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c01170 9c3d03d76fe51968a9602111a0685bfa 450 Pfam PF00589 Phage integrase family 235 426 3.1E-9 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c01170 9c3d03d76fe51968a9602111a0685bfa 450 SUPERFAMILY SSF56349 194 431 1.53E-20 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c01170 9c3d03d76fe51968a9602111a0685bfa 450 Gene3D G3DSA:1.10.443.10 228 434 2.7E-23 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c34730 9c3d03d76fe51968a9602111a0685bfa 450 Pfam PF00589 Phage integrase family 235 426 3.1E-9 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c34730 9c3d03d76fe51968a9602111a0685bfa 450 SUPERFAMILY SSF56349 194 431 1.53E-20 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c34730 9c3d03d76fe51968a9602111a0685bfa 450 Gene3D G3DSA:1.10.443.10 228 434 2.7E-23 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 Gene3D G3DSA:1.10.10.10 14 104 2.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 Pfam PF03466 LysR substrate binding domain 121 308 6.5E-20 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 SUPERFAMILY SSF53850 106 309 6.52E-38 T 11-10-2018 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 61 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 61 72 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 SUPERFAMILY SSF46785 22 99 2.72E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 Gene3D G3DSA:3.40.190.10 108 307 1.3E-39 T 11-10-2018 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 Gene3D G3DSA:3.40.190.10 187 283 1.3E-39 T 11-10-2018 VV93_v1c04590 c7a44bc0c717284059722af49c81cbf3 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 84 1.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c40910 b96f5a480eca9ca65f2434d3ac5ad6b5 289 Gene3D G3DSA:1.10.530.40 102 276 5.0E-11 T 11-10-2018 VV93_v1c40910 b96f5a480eca9ca65f2434d3ac5ad6b5 289 Pfam PF16754 Bacterial toxin homologue of phage lysozyme, C-term 119 256 4.3E-8 T 11-10-2018 IPR031922 Bacterial toxin homologue of phage lysozyme, C-terminal VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 SMART SM00342 171 253 1.4E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 SUPERFAMILY SSF51182 29 126 7.83E-7 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 SUPERFAMILY SSF46689 207 252 3.49E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 Pfam PF12833 Helix-turn-helix domain 177 252 4.1E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 Gene3D G3DSA:1.10.10.60 215 259 3.5E-10 T 11-10-2018 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 Gene3D G3DSA:2.60.120.10 6 87 1.7E-5 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 249 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 Gene3D G3DSA:1.10.10.60 156 214 1.5E-10 T 11-10-2018 VV93_v1c43470 0b46ad756f438a92557b2b42afb82cd8 259 Pfam PF02311 AraC-like ligand binding domain 19 94 2.2E-5 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 157 343 7.8E-81 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 151 346 44.177 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 Pfam PF00925 GTP cyclohydrolase II 158 320 1.2E-65 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 SUPERFAMILY SSF142695 152 322 1.18E-63 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 Pfam PF08719 Domain of unknown function (DUF1768) 6 145 7.1E-36 T 11-10-2018 IPR012816 NADAR VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 Gene3D G3DSA:1.10.357.40 1 151 3.9E-55 T 11-10-2018 IPR037238 YbiA-like superfamily VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 Gene3D G3DSA:3.40.50.10990 152 323 4.5E-73 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 PIRSF PIRSF001259 131 351 2.1E-93 T 11-10-2018 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 PIRSF PIRSF001259 7 146 0.01 T 11-10-2018 VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 SUPERFAMILY SSF143990 3 146 6.28E-51 T 11-10-2018 IPR037238 YbiA-like superfamily VV93_v1c30170 931afe82c8ba39dd520f5d187c28b278 351 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 5 144 3.9E-34 T 11-10-2018 IPR012816 NADAR VV93_v1c01890 be91ba8aac43e9faada8a64227f15130 144 SUPERFAMILY SSF69500 2 143 6.67E-53 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VV93_v1c01890 be91ba8aac43e9faada8a64227f15130 144 Gene3D G3DSA:3.50.80.10 1 144 4.8E-53 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VV93_v1c01890 be91ba8aac43e9faada8a64227f15130 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 32.506 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VV93_v1c01890 be91ba8aac43e9faada8a64227f15130 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 142 1.3E-50 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VV93_v1c01890 be91ba8aac43e9faada8a64227f15130 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 144 1.8E-63 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 VV93_v1c25890 0ea8d42a65e94b866b72c1d18c480846 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 23 238 30.785 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VV93_v1c25890 0ea8d42a65e94b866b72c1d18c480846 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 47 238 7.2E-68 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 VV93_v1c25890 0ea8d42a65e94b866b72c1d18c480846 239 Gene3D G3DSA:3.40.50.150 29 239 5.5E-70 T 11-10-2018 VV93_v1c25890 0ea8d42a65e94b866b72c1d18c480846 239 Pfam PF02390 Putative methyltransferase 62 232 4.7E-58 T 11-10-2018 VV93_v1c25890 0ea8d42a65e94b866b72c1d18c480846 239 SUPERFAMILY SSF53335 16 237 4.18E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c26770 8a3ebef9b6656fef1124b5f9081a897d 290 SUPERFAMILY SSF53448 2 271 1.38E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c26770 8a3ebef9b6656fef1124b5f9081a897d 290 Pfam PF00483 Nucleotidyl transferase 9 265 3.2E-32 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VV93_v1c26770 8a3ebef9b6656fef1124b5f9081a897d 290 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 263 7.0E-124 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 VV93_v1c26770 8a3ebef9b6656fef1124b5f9081a897d 290 Gene3D G3DSA:3.90.550.10 1 278 1.3E-81 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c30260 8e6a085ac7be7d8a5bc140a6bccbd379 421 Pfam PF02687 FtsX-like permease family 314 411 3.3E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c30260 8e6a085ac7be7d8a5bc140a6bccbd379 421 Pfam PF12704 MacB-like periplasmic core domain 27 253 1.8E-14 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c11780 621d9b4f55502d17c0590b19460613fd 359 SUPERFAMILY SSF52540 89 321 5.61E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11780 621d9b4f55502d17c0590b19460613fd 359 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 94 337 1.8E-97 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VV93_v1c11780 621d9b4f55502d17c0590b19460613fd 359 Gene3D G3DSA:3.40.50.300 79 336 4.2E-82 T 11-10-2018 VV93_v1c11780 621d9b4f55502d17c0590b19460613fd 359 Hamap MF_02040 Iron-sulfur cluster carrier protein. 89 334 35.781 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein VV93_v1c11780 621d9b4f55502d17c0590b19460613fd 359 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 Gene3D G3DSA:1.10.10.10 122 218 5.9E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 Pfam PF00072 Response regulator receiver domain 4 112 9.1E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 SUPERFAMILY SSF46894 118 216 1.28E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 SUPERFAMILY SSF52172 1 118 3.84E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 215 4.2E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 Gene3D G3DSA:3.40.50.2300 1 121 2.1E-36 T 11-10-2018 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 SMART SM00862 145 216 5.9E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c31160 ce014b83cd7a89f40bdb5080073db12f 218 SMART SM00448 1 112 1.3E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c18350 fdd4547dd952506aa76f98205f2a20a6 472 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 462 1.9E-49 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c18350 fdd4547dd952506aa76f98205f2a20a6 472 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 35 462 1.9E-77 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c18350 fdd4547dd952506aa76f98205f2a20a6 472 PIRSF PIRSF002457 1 472 4.1E-116 T 11-10-2018 IPR030676 Citrate carrier CitT-related VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PRINTS PR01009 Flagellar M-ring protein signature 183 197 1.9E-22 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PRINTS PR01009 Flagellar M-ring protein signature 226 244 1.9E-22 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PRINTS PR01009 Flagellar M-ring protein signature 376 400 1.9E-22 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PRINTS PR01009 Flagellar M-ring protein signature 151 169 1.9E-22 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PRINTS PR01009 Flagellar M-ring protein signature 296 314 1.9E-22 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 55 579 1.7E-75 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 Gene3D G3DSA:3.30.300.30 153 248 3.1E-9 T 11-10-2018 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 PIRSF PIRSF004862 29 581 2.8E-172 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 Pfam PF01514 Secretory protein of YscJ/FliF family 64 250 1.1E-54 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF VV93_v1c21840 28a43d9ccff393082f6dd1a8221130a3 581 Pfam PF08345 Flagellar M-ring protein C-terminal 283 453 1.8E-40 T 11-10-2018 IPR013556 Flagellar M-ring C-terminal VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 Pfam PF12161 HsdM N-terminal domain 3 145 4.7E-12 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 315 339 1.1E-19 T 11-10-2018 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 180 196 1.1E-19 T 11-10-2018 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 204 218 1.1E-19 T 11-10-2018 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 288 300 1.1E-19 T 11-10-2018 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 291 297 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 SUPERFAMILY SSF53335 3 491 2.09E-114 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 Gene3D G3DSA:1.20.1260.30 1 153 2.5E-49 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 Gene3D G3DSA:3.40.50.150 156 461 1.7E-81 T 11-10-2018 VV93_v1c29970 410a96828cb64288bb7895929dad7f95 492 Pfam PF02384 N-6 DNA Methylase 161 460 1.4E-64 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 VV93_v1c44960 353de1f46c8a57d814bd143414a6b5b9 573 PIRSF PIRSF014753 1 573 4.4E-178 T 11-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 VV93_v1c44960 353de1f46c8a57d814bd143414a6b5b9 573 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 18 354 1.9E-95 T 11-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Pfam PF01256 Carbohydrate kinase 250 489 9.5E-60 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Gene3D G3DSA:3.40.50.10260 3 217 5.7E-63 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 235 493 5.3E-69 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 SUPERFAMILY SSF64153 7 249 2.88E-65 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 432 442 - T 11-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 9 212 24.914 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 PIRSF PIRSF017184 5 494 1.1E-142 T 11-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 227 493 22.058 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Gene3D G3DSA:3.40.1190.20 221 494 2.9E-85 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 SUPERFAMILY SSF53613 225 493 1.93E-77 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 11 211 1.6E-52 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 VV93_v1c41110 3f16f727295dca2082d3bd127c44774d 495 Pfam PF03853 YjeF-related protein N-terminus 30 191 1.2E-47 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 6.6E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 Gene3D G3DSA:3.40.190.10 97 295 1.8E-47 T 11-10-2018 VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 Gene3D G3DSA:1.10.10.10 3 90 3.7E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 Pfam PF03466 LysR substrate binding domain 97 296 2.1E-25 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 SUPERFAMILY SSF53850 93 298 1.28E-36 T 11-10-2018 VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 SUPERFAMILY SSF46785 6 84 8.16E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c23660 84d496f3144091787a5ce22297b80169 301 Gene3D G3DSA:3.40.190.10 174 271 1.8E-47 T 11-10-2018 VV93_v1c22710 3df6295b0c6af17d3ab6fb8f40e9d842 280 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 238 264 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 VV93_v1c22710 3df6295b0c6af17d3ab6fb8f40e9d842 280 Pfam PF01148 Cytidylyltransferase family 2 280 7.4E-68 T 11-10-2018 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 170 190 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Gene3D G3DSA:3.80.30.20 164 405 3.3E-73 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Pfam PF04055 Radical SAM superfamily 172 349 1.4E-29 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 35 464 2.4E-186 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Pfam PF00919 Uncharacterized protein family UPF0004 35 119 7.0E-22 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 34 466 63.472 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Gene3D G3DSA:3.40.50.12160 34 162 6.2E-31 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 35 464 1.1E-108 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 SUPERFAMILY SSF102114 145 396 1.57E-52 T 11-10-2018 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 SMART SM00729 166 391 7.8E-54 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c30920 31685b1192be9e3f26f4ac8413fc42aa 469 Gene3D G3DSA:2.40.50.140 406 469 2.7E-23 T 11-10-2018 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 11 239 39.595 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 11 238 6.0E-93 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 Pfam PF01255 Putative undecaprenyl diphosphate synthase 18 238 6.7E-81 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 184 201 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 SUPERFAMILY SSF64005 8 233 1.44E-89 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 VV93_v1c22720 1303e7ab0b5473cc7cb1f9ae6e1a7e4d 251 Gene3D G3DSA:3.40.1180.10 1 239 4.3E-96 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 VV93_v1c41210 61fb8aa0665acde274895463b110a4ec 191 PIRSF PIRSF000013 1 191 9.1E-94 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 VV93_v1c41210 61fb8aa0665acde274895463b110a4ec 191 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 15 184 1.3E-70 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal VV93_v1c41210 61fb8aa0665acde274895463b110a4ec 191 Gene3D G3DSA:1.10.3820.10 11 187 9.9E-34 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily VV93_v1c41210 61fb8aa0665acde274895463b110a4ec 191 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 4 185 5.8E-95 T 11-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 VV93_v1c41210 61fb8aa0665acde274895463b110a4ec 191 SUPERFAMILY SSF48695 16 190 7.03E-56 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c23160 6c028b61d9b71cb4ba162cd9ff7af3f5 179 Gene3D G3DSA:2.30.130.40 1 90 3.6E-20 T 11-10-2018 VV93_v1c23160 6c028b61d9b71cb4ba162cd9ff7af3f5 179 SUPERFAMILY SSF88697 1 168 7.95E-38 T 11-10-2018 IPR015947 PUA-like superfamily VV93_v1c23160 6c028b61d9b71cb4ba162cd9ff7af3f5 179 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 1 110 1.6E-11 T 11-10-2018 IPR003111 Lon, substrate-binding domain VV93_v1c09650 d1ea496c88574fc95edcad6bdfbc603f 76 Gene3D G3DSA:1.10.10.10 1 72 9.0E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09650 d1ea496c88574fc95edcad6bdfbc603f 76 SUPERFAMILY SSF46785 1 58 1.91E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c09650 d1ea496c88574fc95edcad6bdfbc603f 76 Pfam PF09012 FeoC like transcriptional regulator 2 54 2.7E-13 T 11-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 SUPERFAMILY SSF63380 93 195 8.25E-32 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 SUPERFAMILY SSF63380 1 89 6.38E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 Pfam PF00677 Lumazine binding domain 100 184 7.5E-24 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 Pfam PF00677 Lumazine binding domain 3 87 2.7E-20 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 Gene3D G3DSA:2.40.30.20 102 206 6.8E-35 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 PIRSF PIRSF000498 1 212 7.5E-80 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 Gene3D G3DSA:2.40.30.20 1 89 2.9E-26 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c08010 3549052b3ed2937797f977d8f42fbcb9 218 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 1.9E-66 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 321 2.4E-129 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 PIRSF PIRSF004532 1 332 8.5E-136 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 Gene3D G3DSA:3.40.190.90 109 276 4.2E-126 T 11-10-2018 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 Gene3D G3DSA:3.30.540.10 7 319 4.2E-126 T 11-10-2018 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 328 3.9E-168 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 VV93_v1c27480 25f2a093649aa7fff41916bdff554c0a 335 SUPERFAMILY SSF56655 1 324 4.94E-108 T 11-10-2018 VV93_v1c37300 c526779a8785d9e1a77287d6aa1a8bb1 179 Gene3D G3DSA:1.20.950.20 2 83 7.9E-6 T 11-10-2018 VV93_v1c37300 c526779a8785d9e1a77287d6aa1a8bb1 179 Pfam PF01292 Prokaryotic cytochrome b561 8 176 3.2E-32 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VV93_v1c37300 c526779a8785d9e1a77287d6aa1a8bb1 179 SUPERFAMILY SSF81342 3 176 1.41E-38 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.4E-136 T 11-10-2018 IPR033752 MetA family VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 Gene3D G3DSA:3.40.50.880 1 301 8.0E-126 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 PIRSF PIRSF000450 1 309 2.2E-148 T 11-10-2018 IPR033752 MetA family VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 SUPERFAMILY SSF52317 18 297 1.71E-103 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 4.0E-140 T 11-10-2018 VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 301 1.3E-162 T 11-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 VV93_v1c14010 3d82793c2aae3a1648a3b7e68ffbc71e 313 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 41.712 T 11-10-2018 IPR033752 MetA family VV93_v1c05430 07d1b4a1641d11f62859f56140b3534c 197 Pfam PF04972 BON domain 44 110 3.5E-10 T 11-10-2018 IPR007055 BON domain VV93_v1c05430 07d1b4a1641d11f62859f56140b3534c 197 Pfam PF04972 BON domain 120 185 3.8E-19 T 11-10-2018 IPR007055 BON domain VV93_v1c05430 07d1b4a1641d11f62859f56140b3534c 197 SMART SM00749 48 111 40.0 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria VV93_v1c05430 07d1b4a1641d11f62859f56140b3534c 197 SMART SM00749 125 188 1.9E-5 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 10 343 3.7E-151 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 SUPERFAMILY SSF54862 165 316 9.63E-19 T 11-10-2018 VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 3 311 49.817 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 Pfam PF13484 4Fe-4S double cluster binding domain 189 252 2.2E-19 T 11-10-2018 VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c28040 e1d35e5be6a668ea21a6f3439d7afc68 373 Pfam PF08331 Domain of unknown function (DUF1730) 58 136 8.4E-25 T 11-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 VV93_v1c27680 4f5d3ffb43e983f931021b34df630f41 318 SUPERFAMILY SSF56235 10 314 4.54E-98 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c27680 4f5d3ffb43e983f931021b34df630f41 318 Pfam PF01112 Asparaginase 12 313 2.2E-111 T 11-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 VV93_v1c27680 4f5d3ffb43e983f931021b34df630f41 318 Gene3D G3DSA:3.60.20.30 183 318 4.0E-47 T 11-10-2018 VV93_v1c18790 5a75aed167f4aa9a13b78b1b9cdd7d49 518 Pfam PF03734 L,D-transpeptidase catalytic domain 291 455 8.7E-27 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VV93_v1c18790 5a75aed167f4aa9a13b78b1b9cdd7d49 518 Pfam PF01471 Putative peptidoglycan binding domain 226 263 8.5E-10 T 11-10-2018 IPR002477 Peptidoglycan binding-like VV93_v1c18790 5a75aed167f4aa9a13b78b1b9cdd7d49 518 SUPERFAMILY SSF47090 193 271 1.26E-14 T 11-10-2018 IPR036365 PGBD-like superfamily VV93_v1c18790 5a75aed167f4aa9a13b78b1b9cdd7d49 518 SUPERFAMILY SSF141523 289 450 1.7E-17 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 Gene3D G3DSA:1.20.1640.10 587 777 2.3E-15 T 11-10-2018 VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 SUPERFAMILY SSF82866 577 768 2.09E-32 T 11-10-2018 VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 Gene3D G3DSA:1.20.1640.10 186 409 7.9E-14 T 11-10-2018 VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 Pfam PF03176 MMPL family 591 765 1.4E-13 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 Pfam PF03176 MMPL family 60 385 2.4E-20 T 11-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 VV93_v1c17370 889787ba6164ab27ec7d35afc0ad6111 791 SUPERFAMILY SSF82866 163 382 4.32E-32 T 11-10-2018 VV93_v1c37470 fd6f997cdfcba458226d36096864fdc4 263 Gene3D G3DSA:3.30.2010.10 51 139 2.1E-7 T 11-10-2018 VV93_v1c37470 fd6f997cdfcba458226d36096864fdc4 263 Pfam PF01435 Peptidase family M48 62 246 1.5E-46 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VV93_v1c00410 a447d7b08d4c7e2b94478dcb07226fe6 312 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 69 2.0E-9 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VV93_v1c00410 a447d7b08d4c7e2b94478dcb07226fe6 312 SUPERFAMILY SSF161098 93 294 2.62E-25 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c00410 a447d7b08d4c7e2b94478dcb07226fe6 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 309 4.0E-30 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c00410 a447d7b08d4c7e2b94478dcb07226fe6 312 Gene3D G3DSA:1.10.3720.10 86 306 4.9E-25 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c32870 a7134515b6909e021239c90b90272557 413 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 90 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 VV93_v1c32870 a7134515b6909e021239c90b90272557 413 SUPERFAMILY SSF103473 13 404 1.22E-55 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c32870 a7134515b6909e021239c90b90272557 413 Gene3D G3DSA:1.20.1250.20 14 409 3.3E-49 T 11-10-2018 VV93_v1c32870 a7134515b6909e021239c90b90272557 413 Pfam PF07690 Major Facilitator Superfamily 23 354 1.9E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 4 18 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 166 179 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 104 112 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 52 61 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 79 90 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00097 Anthranilate synthase component II signature 124 136 7.2E-35 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 6.7E-6 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 6.7E-6 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 Gene3D G3DSA:3.40.50.880 2 191 7.3E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 Pfam PF00117 Glutamine amidotransferase class-I 6 186 1.1E-44 T 11-10-2018 IPR017926 Glutamine amidotransferase VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 188 3.6E-55 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 8.2E-14 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 8.2E-14 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 8.2E-14 T 11-10-2018 VV93_v1c11380 ab8fa255f310afa6bce0fd85ada1ba32 192 SUPERFAMILY SSF52317 3 191 8.84E-48 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c30270 8791cafdf28027e6d5aab0ec013bb908 256 Gene3D G3DSA:2.50.20.10 20 250 1.2E-37 T 11-10-2018 VV93_v1c30270 8791cafdf28027e6d5aab0ec013bb908 256 Pfam PF17131 Outer membrane lipoprotein-sorting protein 74 249 1.6E-37 T 11-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein VV93_v1c30270 8791cafdf28027e6d5aab0ec013bb908 256 PIRSF PIRSF028205 1 253 3.5E-117 T 11-10-2018 IPR011220 Uncharacterised conserved protein UCP028205 VV93_v1c40980 c5233c657944a73d4461dd0384927c0e 207 Gene3D G3DSA:2.160.10.10 1 207 1.4E-75 T 11-10-2018 VV93_v1c40980 c5233c657944a73d4461dd0384927c0e 207 SUPERFAMILY SSF51161 18 204 5.68E-43 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c40980 c5233c657944a73d4461dd0384927c0e 207 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c40980 c5233c657944a73d4461dd0384927c0e 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 143 1.7E-10 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 SUPERFAMILY SSF51735 3 166 1.63E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 Gene3D G3DSA:3.40.50.720 4 326 2.0E-154 T 11-10-2018 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.2E-136 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PIRSF PIRSF000149 1 331 3.4E-134 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 SMART SM00846 3 150 8.6E-95 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 3.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 3.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 3.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 3.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 3.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 5.5E-40 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 SUPERFAMILY SSF55347 149 312 1.81E-77 T 11-10-2018 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 9.2E-70 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 VV93_v1c10650 6aaf3f8f14703bbf9eab7b306dc1ed3a 331 Gene3D G3DSA:3.30.360.10 149 314 2.0E-154 T 11-10-2018 VV93_v1c26720 e4403217aa8a6700f5428380fa4b9b0a 216 Pfam PF04612 Type II secretion system (T2SS), protein M 9 75 1.9E-8 T 11-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 VV93_v1c00910 004dc0de627065a741c17be50d691d9a 169 SUPERFAMILY SSF52799 17 164 2.72E-30 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like VV93_v1c00910 004dc0de627065a741c17be50d691d9a 169 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 114 124 - T 11-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 VV93_v1c00910 004dc0de627065a741c17be50d691d9a 169 Gene3D G3DSA:3.90.190.10 8 169 1.2E-28 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like VV93_v1c00910 004dc0de627065a741c17be50d691d9a 169 SMART SM00404 72 168 0.0038 T 11-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic VV93_v1c00910 004dc0de627065a741c17be50d691d9a 169 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 20 133 5.3E-8 T 11-10-2018 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c25040 efc1e148533d67ae6d6acb2f2f7cb93d 210 SUPERFAMILY SSF53955 17 202 4.57E-23 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c25040 efc1e148533d67ae6d6acb2f2f7cb93d 210 Gene3D G3DSA:1.10.530.10 47 206 1.2E-13 T 11-10-2018 VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 SUPERFAMILY SSF47616 163 312 1.81E-36 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 SUPERFAMILY SSF52833 31 150 2.41E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 PIRSF PIRSF015753 5 312 4.7E-136 T 11-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 Gene3D G3DSA:1.20.1050.10 168 316 6.6E-70 T 11-10-2018 VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 Pfam PF13409 Glutathione S-transferase, N-terminal domain 56 146 1.0E-22 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 Pfam PF13410 Glutathione S-transferase, C-terminal domain 192 263 1.0E-13 T 11-10-2018 VV93_v1c11270 f1a5191c86482130ef5fbb019a6b651d 316 Gene3D G3DSA:3.40.30.130 1 167 1.3E-66 T 11-10-2018 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Pfam PF17203 Single cache domain 3 37 167 2.4E-19 T 11-10-2018 IPR033463 Single cache domain 3 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 320 369 7.2E-9 T 11-10-2018 IPR039506 SpoOB, alpha-helical domain VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SUPERFAMILY SSF55785 215 306 2.42E-12 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SMART SM00091 213 279 1.2E-4 T 11-10-2018 IPR000014 PAS domain VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SUPERFAMILY SSF55890 322 405 6.15E-10 T 11-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Gene3D G3DSA:3.30.565.10 382 539 2.3E-23 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 5.7E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 5.7E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 480 5.7E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SUPERFAMILY SSF103190 40 168 2.12E-34 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Gene3D G3DSA:3.30.450.20 199 310 5.7E-22 T 11-10-2018 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Pfam PF00989 PAS fold 215 276 2.8E-7 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SMART SM00387 418 537 2.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 SUPERFAMILY SSF55874 388 534 9.69E-22 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 536 3.4E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c14790 62aa4f567e9398b592337a58a6ddf906 539 Gene3D G3DSA:3.30.450.20 34 164 1.8E-39 T 11-10-2018 VV93_v1c31550 656498ebb5df5502cf349c2008d4053b 440 Gene3D G3DSA:2.40.30.170 60 361 1.1E-33 T 11-10-2018 VV93_v1c31550 656498ebb5df5502cf349c2008d4053b 440 Gene3D G3DSA:1.10.287.470 103 218 1.1E-33 T 11-10-2018 VV93_v1c31550 656498ebb5df5502cf349c2008d4053b 440 Gene3D G3DSA:2.40.420.20 362 425 1.1E-33 T 11-10-2018 VV93_v1c31550 656498ebb5df5502cf349c2008d4053b 440 SUPERFAMILY SSF111369 60 322 1.01E-8 T 11-10-2018 VV93_v1c31550 656498ebb5df5502cf349c2008d4053b 440 Gene3D G3DSA:2.40.50.100 66 252 1.1E-33 T 11-10-2018 VV93_v1c06350 60732ff4f1193bac1d7bd3426b7a4700 598 Pfam PF00999 Sodium/hydrogen exchanger family 18 386 1.9E-34 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c06350 60732ff4f1193bac1d7bd3426b7a4700 598 SUPERFAMILY SSF51735 399 493 1.58E-9 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c06350 60732ff4f1193bac1d7bd3426b7a4700 598 Gene3D G3DSA:1.20.1530.20 6 388 2.7E-16 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily VV93_v1c06350 60732ff4f1193bac1d7bd3426b7a4700 598 Gene3D G3DSA:3.40.50.720 397 500 2.0E-10 T 11-10-2018 VV93_v1c06350 60732ff4f1193bac1d7bd3426b7a4700 598 Pfam PF02254 TrkA-N domain 399 491 2.1E-7 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 VV93_v1c41660 a3a3616c7f5b19202542132c7d344eb7 253 SUPERFAMILY SSF56235 2 250 8.49E-34 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c41660 a3a3616c7f5b19202542132c7d344eb7 253 Gene3D G3DSA:3.60.20.10 1 252 1.2E-87 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c41660 a3a3616c7f5b19202542132c7d344eb7 253 Pfam PF13230 Glutamine amidotransferases class-II 25 197 1.1E-19 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 VV93_v1c36320 e9cbdefcee0e6ac552a7b959690e501a 337 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 32 287 1.6E-30 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain VV93_v1c36320 e9cbdefcee0e6ac552a7b959690e501a 337 Gene3D G3DSA:3.40.50.2300 141 327 1.1E-114 T 11-10-2018 VV93_v1c36320 e9cbdefcee0e6ac552a7b959690e501a 337 Gene3D G3DSA:3.40.50.2300 34 303 1.1E-114 T 11-10-2018 VV93_v1c36320 e9cbdefcee0e6ac552a7b959690e501a 337 TIGRFAM TIGR02955 TMAO_TorT: TMAO reductase system periplasmic protein TorT 33 331 1.5E-135 T 11-10-2018 IPR014301 TMAO reductase system, periplasmic protein TorT VV93_v1c36320 e9cbdefcee0e6ac552a7b959690e501a 337 SUPERFAMILY SSF53822 33 297 1.39E-35 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c38120 8498eb02debb23c11cc9de4d6f9de115 86 Pfam PF13518 Helix-turn-helix domain 12 61 4.6E-9 T 11-10-2018 VV93_v1c38120 8498eb02debb23c11cc9de4d6f9de115 86 SUPERFAMILY SSF46689 12 76 1.7E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c12490 d7145e6c6f1fdae8032b4af7ed401095 430 Pfam PF01593 Flavin containing amine oxidoreductase 10 297 2.4E-19 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 VV93_v1c12490 d7145e6c6f1fdae8032b4af7ed401095 430 SUPERFAMILY SSF51905 1 413 2.3E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c12490 d7145e6c6f1fdae8032b4af7ed401095 430 Gene3D G3DSA:3.50.50.60 1 268 5.3E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c28780 84283dc51308e10e309e2ab27bb383f6 162 Pfam PF00466 Ribosomal protein L10 5 101 2.1E-26 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 VV93_v1c28780 84283dc51308e10e309e2ab27bb383f6 162 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 11-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c28780 84283dc51308e10e309e2ab27bb383f6 162 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 159 24.316 T 11-10-2018 IPR022973 Ribosomal protein L10 VV93_v1c28780 84283dc51308e10e309e2ab27bb383f6 162 SUPERFAMILY SSF160369 4 159 4.97E-45 T 11-10-2018 VV93_v1c28780 84283dc51308e10e309e2ab27bb383f6 162 Gene3D G3DSA:3.30.70.1730 1 124 2.8E-35 T 11-10-2018 VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 Gene3D G3DSA:1.10.10.10 5 91 1.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 Gene3D G3DSA:3.40.190.10 94 293 2.4E-59 T 11-10-2018 VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 Pfam PF03466 LysR substrate binding domain 90 295 2.0E-43 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 Gene3D G3DSA:3.40.190.10 165 267 2.4E-59 T 11-10-2018 VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 SUPERFAMILY SSF53850 90 298 1.36E-46 T 11-10-2018 VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 SUPERFAMILY SSF46785 8 90 4.63E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c09830 8e801ccaee9518020cd8e56de189753b 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 1.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c16010 b0814c40ef27f2888a55bc1e3a60d9b9 789 Gene3D G3DSA:3.40.50.300 462 605 1.3E-7 T 11-10-2018 VV93_v1c16010 b0814c40ef27f2888a55bc1e3a60d9b9 789 SUPERFAMILY SSF52540 464 634 2.23E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 SUPERFAMILY SSF53822 258 600 9.89E-67 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 Gene3D G3DSA:1.25.40.650 149 254 1.1E-15 T 11-10-2018 VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 Pfam PF04348 LppC putative lipoprotein 40 601 1.4E-155 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 Gene3D G3DSA:1.25.40.10 24 146 1.5E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 Gene3D G3DSA:3.40.50.2300 369 597 4.9E-61 T 11-10-2018 VV93_v1c05460 a458723b454608482b2c8e69891c25ce 603 Gene3D G3DSA:3.40.50.2300 261 596 4.9E-61 T 11-10-2018 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Pfam PF06827 Zinc finger found in FPG and IleRS 909 936 2.0E-6 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 SUPERFAMILY SSF52374 4 652 2.21E-138 T 11-10-2018 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Gene3D G3DSA:1.10.730.20 645 940 1.1E-84 T 11-10-2018 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Gene3D G3DSA:3.90.740.10 195 413 5.9E-243 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 854 5.1E-295 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 645 9.9E-220 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 SUPERFAMILY SSF50677 205 408 9.1E-55 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Gene3D G3DSA:3.40.50.620 25 634 5.9E-243 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Pfam PF08264 Anticodon-binding domain of tRNA 690 850 3.1E-25 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 939 21.479 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 5.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 566 575 5.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 5.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 531 544 5.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 406 421 5.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 VV93_v1c06270 5da8f478ca0ffdc54be8de592e631b96 948 SUPERFAMILY SSF47323 657 939 1.07E-72 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c39070 87c171fe7dc0e30f69d8c516d14a6da6 184 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 5.3E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c39070 87c171fe7dc0e30f69d8c516d14a6da6 184 Gene3D G3DSA:3.30.700.10 7 163 7.7E-13 T 11-10-2018 VV93_v1c39070 87c171fe7dc0e30f69d8c516d14a6da6 184 SUPERFAMILY SSF54523 7 136 1.73E-16 T 11-10-2018 VV93_v1c39070 87c171fe7dc0e30f69d8c516d14a6da6 184 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 1.3E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c39070 87c171fe7dc0e30f69d8c516d14a6da6 184 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c19960 cccda36d6d641fd3383938803edc0952 486 SMART SM00283 223 477 4.5E-28 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c19960 cccda36d6d641fd3383938803edc0952 486 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 291 442 1.2E-32 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c19960 cccda36d6d641fd3383938803edc0952 486 Gene3D G3DSA:1.10.287.950 181 482 4.0E-47 T 11-10-2018 VV93_v1c19960 cccda36d6d641fd3383938803edc0952 486 SUPERFAMILY SSF58104 241 481 2.88E-42 T 11-10-2018 VV93_v1c01210 913fd9ff8b0b481ede7013c63ba9e1f0 180 SUPERFAMILY SSF55729 5 136 3.78E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c01210 913fd9ff8b0b481ede7013c63ba9e1f0 180 Pfam PF13508 Acetyltransferase (GNAT) domain 52 132 5.4E-9 T 11-10-2018 IPR000182 GNAT domain VV93_v1c01210 913fd9ff8b0b481ede7013c63ba9e1f0 180 Gene3D G3DSA:3.40.630.30 5 174 4.7E-23 T 11-10-2018 VV93_v1c34770 913fd9ff8b0b481ede7013c63ba9e1f0 180 SUPERFAMILY SSF55729 5 136 3.78E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c34770 913fd9ff8b0b481ede7013c63ba9e1f0 180 Pfam PF13508 Acetyltransferase (GNAT) domain 52 132 5.4E-9 T 11-10-2018 IPR000182 GNAT domain VV93_v1c34770 913fd9ff8b0b481ede7013c63ba9e1f0 180 Gene3D G3DSA:3.40.630.30 5 174 4.7E-23 T 11-10-2018 VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 Gene3D G3DSA:1.10.443.10 201 398 3.5E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 Pfam PF00589 Phage integrase family 205 374 1.4E-13 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 SUPERFAMILY SSF56349 97 394 4.41E-50 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 Gene3D G3DSA:1.10.150.130 98 200 3.3E-32 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 Pfam PF13356 Arm DNA-binding domain 5 89 1.8E-16 T 11-10-2018 IPR025166 Integrase, DNA-binding domain VV93_v1c02690 c00037fb81fe758ea55c92fe2a19cb71 405 Gene3D G3DSA:3.30.160.390 2 97 2.2E-22 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 TIGRFAM TIGR00615 recR: recombination protein RecR 3 197 1.5E-77 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 11-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 SMART SM00493 81 166 8.9E-17 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 Gene3D G3DSA:1.10.8.420 1 53 5.8E-19 T 11-10-2018 VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 101.501 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 Pfam PF13662 Toprim domain 83 172 1.7E-22 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 SUPERFAMILY SSF111304 2 199 6.15E-72 T 11-10-2018 IPR023627 Recombination protein RecR VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 Pfam PF02132 RecR protein 41 77 3.0E-15 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger VV93_v1c21160 cbff0ae7d09f7aaf788e54d99793114e 199 Gene3D G3DSA:3.40.1360.10 78 199 2.9E-38 T 11-10-2018 VV93_v1c01710 a93bf8291e55b6ab6bf3f0c100991dd6 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 1 253 4.8E-73 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 VV93_v1c01710 a93bf8291e55b6ab6bf3f0c100991dd6 256 Gene3D G3DSA:3.20.20.140 1 255 3.6E-81 T 11-10-2018 VV93_v1c01710 a93bf8291e55b6ab6bf3f0c100991dd6 256 SUPERFAMILY SSF51556 1 252 3.41E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c01710 a93bf8291e55b6ab6bf3f0c100991dd6 256 PIRSF PIRSF005902 1 256 2.3E-72 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c01710 a93bf8291e55b6ab6bf3f0c100991dd6 256 Pfam PF01026 TatD related DNase 2 252 2.9E-68 T 11-10-2018 IPR001130 TatD family GO:0016788 VV93_v1c24530 5c106f8fd635217d6a92143f73fe5c8f 296 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 283 4.0E-45 T 11-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 VV93_v1c24530 5c106f8fd635217d6a92143f73fe5c8f 296 SUPERFAMILY SSF53067 1 111 3.98E-24 T 11-10-2018 VV93_v1c24530 5c106f8fd635217d6a92143f73fe5c8f 296 Gene3D G3DSA:3.30.420.40 5 114 7.1E-67 T 11-10-2018 VV93_v1c24530 5c106f8fd635217d6a92143f73fe5c8f 296 Gene3D G3DSA:3.30.420.40 115 261 7.1E-67 T 11-10-2018 VV93_v1c24530 5c106f8fd635217d6a92143f73fe5c8f 296 SUPERFAMILY SSF53067 114 283 1.5E-42 T 11-10-2018 VV93_v1c03900 f280a68020b1dae1f083c9ffdb89fa3e 247 Pfam PF10986 Protein of unknown function (DUF2796) 29 242 1.5E-34 T 11-10-2018 IPR021253 Protein of unknown function DUF2796 VV93_v1c01480 991b56adc30e9820e8b7462e149ebb02 183 SUPERFAMILY SSF56925 21 183 4.71E-15 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c01480 991b56adc30e9820e8b7462e149ebb02 183 Gene3D G3DSA:2.40.160.20 24 183 3.6E-16 T 11-10-2018 VV93_v1c01480 991b56adc30e9820e8b7462e149ebb02 183 Pfam PF13505 Outer membrane protein beta-barrel domain 7 183 9.7E-9 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c35040 991b56adc30e9820e8b7462e149ebb02 183 SUPERFAMILY SSF56925 21 183 4.71E-15 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c35040 991b56adc30e9820e8b7462e149ebb02 183 Gene3D G3DSA:2.40.160.20 24 183 3.6E-16 T 11-10-2018 VV93_v1c35040 991b56adc30e9820e8b7462e149ebb02 183 Pfam PF13505 Outer membrane protein beta-barrel domain 7 183 9.7E-9 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c02350 10d280fc358430b4e5c4812f606b1bb0 632 Pfam PF00884 Sulfatase 260 529 1.5E-26 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c02350 10d280fc358430b4e5c4812f606b1bb0 632 SUPERFAMILY SSF53649 258 601 1.74E-40 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c02350 10d280fc358430b4e5c4812f606b1bb0 632 Gene3D G3DSA:3.40.720.10 251 531 1.5E-43 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c21590 7e557cc2b38d9e272206597e59a80031 166 Pfam PF10975 Protein of unknown function (DUF2802) 68 135 2.1E-22 T 11-10-2018 IPR021244 Protein of unknown function DUF2802 VV93_v1c03480 e651f3df8f75fcb377f25aa66924d9f5 100 Pfam PF00276 Ribosomal protein L23 9 95 1.4E-31 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03480 e651f3df8f75fcb377f25aa66924d9f5 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 11-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03480 e651f3df8f75fcb377f25aa66924d9f5 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.535 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 VV93_v1c03480 e651f3df8f75fcb377f25aa66924d9f5 100 Gene3D G3DSA:3.30.70.330 1 100 4.0E-38 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VV93_v1c03480 e651f3df8f75fcb377f25aa66924d9f5 100 SUPERFAMILY SSF54189 3 92 3.6E-32 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 146 357 1.8E-73 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 24 435 6.8E-194 T 11-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 22 437 6.2E-174 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 SMART SM00382 158 342 5.4E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 Gene3D G3DSA:3.40.50.12240 19 439 1.8E-156 T 11-10-2018 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 VV93_v1c21810 bb09505b8b0df50fbb584c5c5edbe5fb 440 SUPERFAMILY SSF52540 94 362 1.97E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13560 f2cd84fee29d665f9549ce3082276c78 301 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 134 299 4.0E-87 T 11-10-2018 IPR005642 Lysine exporter LysO VV93_v1c13560 f2cd84fee29d665f9549ce3082276c78 301 Pfam PF03956 Lysine exporter LysO 112 297 1.1E-52 T 11-10-2018 IPR005642 Lysine exporter LysO VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 Gene3D G3DSA:3.40.50.620 1 187 3.9E-60 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 PIRSF PIRSF004491 1 311 3.0E-106 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 Pfam PF06574 FAD synthetase 12 167 3.0E-57 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 Gene3D G3DSA:2.40.30.30 188 311 4.9E-40 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 307 2.3E-108 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 SUPERFAMILY SSF52374 15 175 3.75E-33 T 11-10-2018 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 SMART SM00904 183 307 5.5E-63 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 SUPERFAMILY SSF82114 174 309 1.92E-45 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 VV93_v1c06260 99fa8cdfd675ec384f7b512091c2071d 311 Pfam PF01687 Riboflavin kinase 184 306 4.0E-38 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 Pfam PF04002 RadC-like JAB domain 104 222 1.9E-45 T 11-10-2018 IPR025657 RadC-like JAB domain VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 SUPERFAMILY SSF47781 17 91 2.71E-10 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 SUPERFAMILY SSF102712 130 192 5.89E-5 T 11-10-2018 VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 2.0E-77 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 VV93_v1c02770 1daff0aa6e218ca32b230adda0467de2 224 Gene3D G3DSA:3.40.140.10 102 224 3.8E-44 T 11-10-2018 VV93_v1c42750 fc071ea83a17a0112e2bf483affae072 157 ProSitePatterns PS00892 HIT domain signature. 90 108 - T 11-10-2018 IPR019808 Histidine triad, conserved site VV93_v1c42750 fc071ea83a17a0112e2bf483affae072 157 Pfam PF01230 HIT domain 20 111 5.7E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c42750 fc071ea83a17a0112e2bf483affae072 157 Gene3D G3DSA:3.30.428.10 1 148 1.7E-31 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c42750 fc071ea83a17a0112e2bf483affae072 157 SUPERFAMILY SSF54197 5 147 7.2E-33 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 Pfam PF10996 Beta-Casp domain 248 378 4.3E-27 T 11-10-2018 IPR022712 Beta-Casp domain VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 SMART SM01027 248 378 5.1E-54 T 11-10-2018 IPR022712 Beta-Casp domain VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 Gene3D G3DSA:3.40.50.10890 216 404 1.2E-129 T 11-10-2018 VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 Pfam PF00753 Metallo-beta-lactamase superfamily 20 194 9.9E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 392 443 2.5E-13 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 SUPERFAMILY SSF56281 1 443 2.84E-120 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 SMART SM00849 13 232 8.1E-15 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c03420 04624f5fe61d85c00fdc98a59c8cf36a 446 Gene3D G3DSA:3.60.15.10 6 439 1.2E-129 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c33660 0b311109482eb8df8fa6db4a7e58bec0 318 PIRSF PIRSF002849 1 318 1.4E-127 T 11-10-2018 VV93_v1c33660 0b311109482eb8df8fa6db4a7e58bec0 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 2.4E-62 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VV93_v1c33660 0b311109482eb8df8fa6db4a7e58bec0 318 Gene3D G3DSA:3.40.50.300 17 183 1.5E-46 T 11-10-2018 VV93_v1c33660 0b311109482eb8df8fa6db4a7e58bec0 318 Gene3D G3DSA:1.10.8.300 199 315 1.6E-38 T 11-10-2018 VV93_v1c33660 0b311109482eb8df8fa6db4a7e58bec0 318 SUPERFAMILY SSF52540 6 290 1.27E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11520 32abb384dec0b28f21796fa2cd9b2e32 185 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 4.6E-54 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VV93_v1c11520 32abb384dec0b28f21796fa2cd9b2e32 185 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VV93_v1c11520 32abb384dec0b28f21796fa2cd9b2e32 185 Gene3D G3DSA:1.20.120.1760 2 181 3.9E-17 T 11-10-2018 VV93_v1c11520 32abb384dec0b28f21796fa2cd9b2e32 185 PIRSF PIRSF000847 1 184 1.8E-46 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VV93_v1c11520 32abb384dec0b28f21796fa2cd9b2e32 185 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 2.0E-17 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VV93_v1c03750 00916f1335e48b9abbb3a0e3a9b0b2b9 187 Pfam PF08525 Opacity-associated protein A N-terminal motif 36 63 8.6E-9 T 11-10-2018 IPR013731 Opacity-associated protein A, N-terminal VV93_v1c03750 00916f1335e48b9abbb3a0e3a9b0b2b9 187 Pfam PF04225 Opacity-associated protein A LysM-like domain 103 187 8.2E-39 T 11-10-2018 IPR007340 Opacity-associated protein A VV93_v1c03750 00916f1335e48b9abbb3a0e3a9b0b2b9 187 Gene3D G3DSA:3.10.450.350 92 185 3.6E-13 T 11-10-2018 VV93_v1c08530 3abeddae2116bc9bd4052ca45e9e06e2 370 SUPERFAMILY SSF52540 119 320 5.29E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c08530 3abeddae2116bc9bd4052ca45e9e06e2 370 Gene3D G3DSA:3.40.50.300 117 323 4.7E-74 T 11-10-2018 VV93_v1c08530 3abeddae2116bc9bd4052ca45e9e06e2 370 Pfam PF02562 PhoH-like protein 120 323 7.2E-95 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 SMART SM00421 153 208 1.8E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 SUPERFAMILY SSF46894 150 207 7.48E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 207 2.6E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 Gene3D G3DSA:1.10.10.10 146 208 1.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c33690 4a04e4e1a9e63ed898b0e907057588eb 208 Gene3D G3DSA:3.40.50.2300 5 145 1.2E-36 T 11-10-2018 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 Pfam PF08443 RimK-like ATP-grasp domain 98 286 4.8E-67 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 SUPERFAMILY SSF56059 98 288 3.36E-50 T 11-10-2018 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 52.247 T 11-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 Gene3D G3DSA:3.40.50.20 1 114 1.5E-40 T 11-10-2018 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 3 286 2.1E-84 T 11-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 Gene3D G3DSA:3.30.1490.20 115 181 3.3E-26 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c42300 245eb4f75fb83fa0e80f5648b4e68e68 301 Gene3D G3DSA:3.30.470.80 182 299 4.9E-43 T 11-10-2018 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.52 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 SUPERFAMILY SSF56235 2 234 7.46E-76 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Gene3D G3DSA:3.40.50.10490 249 609 8.2E-145 T 11-10-2018 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 SUPERFAMILY SSF53697 245 610 3.25E-113 T 11-10-2018 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Gene3D G3DSA:3.40.50.10490 448 595 8.2E-145 T 11-10-2018 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Pfam PF13522 Glutamine amidotransferase domain 54 174 2.8E-22 T 11-10-2018 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Gene3D G3DSA:3.60.20.10 2 241 2.5E-81 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Pfam PF01380 SIS domain 290 419 9.5E-33 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 Pfam PF01380 SIS domain 463 592 3.5E-24 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c04680 5e5c1bd7a07835a74ecd52441102fbb1 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 3.6E-260 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 SUPERFAMILY SSF51269 295 356 4.4E-17 T 11-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 Gene3D G3DSA:3.90.1210.10 292 357 4.6E-19 T 11-10-2018 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 Pfam PF03102 NeuB family 22 289 5.2E-99 T 11-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 TIGRFAM TIGR03569 NeuB_NnaB: N-acetylneuraminate synthase 2 355 1.7E-152 T 11-10-2018 IPR020007 N-acetylneuraminate synthase KEGG: 00520+2.5.1.101|MetaCyc: PWY-6749|MetaCyc: PWY-7131 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 Gene3D G3DSA:3.20.20.70 1 288 3.7E-94 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c03020 dd1f6cdcfb34abc07ec99d696c4dcf87 357 SUPERFAMILY SSF51569 2 313 1.89E-78 T 11-10-2018 VV93_v1c12110 dda797c5b4732e409c367439dfcb8526 465 Pfam PF00817 impB/mucB/samB family 17 146 8.5E-6 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 VV93_v1c12110 dda797c5b4732e409c367439dfcb8526 465 SUPERFAMILY SSF56672 20 223 1.2E-26 T 11-10-2018 VV93_v1c21820 aa4b5ec6397351feba78795c5a1a7352 266 PRINTS PR01003 Flagellar assembly protein FliH signature 112 130 2.1E-5 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VV93_v1c21820 aa4b5ec6397351feba78795c5a1a7352 266 PRINTS PR01003 Flagellar assembly protein FliH signature 217 233 2.1E-5 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VV93_v1c21820 aa4b5ec6397351feba78795c5a1a7352 266 PRINTS PR01003 Flagellar assembly protein FliH signature 89 111 2.1E-5 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 VV93_v1c21820 aa4b5ec6397351feba78795c5a1a7352 266 Pfam PF02108 Flagellar assembly protein FliH 125 252 1.6E-33 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 SUPERFAMILY SSF56327 144 309 1.87E-42 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 2 142 6.7E-31 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PIRSF PIRSF000102 1 318 2.0E-90 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 148 311 4.4E-23 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 SUPERFAMILY SSF51735 3 145 2.1E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PRINTS PR00086 L-lactate dehydrogenase signature 3 27 1.3E-20 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 1.3E-20 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PRINTS PR00086 L-lactate dehydrogenase signature 28 52 1.3E-20 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 1.3E-20 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 1.3E-20 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 Gene3D G3DSA:3.90.110.10 146 315 1.4E-45 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 VV93_v1c32670 698dc3b32422134696491e4e35728f7e 318 Gene3D G3DSA:3.40.50.720 1 145 1.1E-38 T 11-10-2018 VV93_v1c05110 4bce0595e48c0848885869d870f5d21e 160 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 129 7.1E-25 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c05110 4bce0595e48c0848885869d870f5d21e 160 Gene3D G3DSA:3.30.70.560 1 154 1.3E-33 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c05110 4bce0595e48c0848885869d870f5d21e 160 SUPERFAMILY SSF55083 1 149 4.97E-38 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c05110 4bce0595e48c0848885869d870f5d21e 160 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 129 2.1E-29 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c06120 8cf9448c25b01ac24c42d64fdeb8967d 344 Pfam PF00248 Aldo/keto reductase family 15 335 6.4E-75 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain VV93_v1c06120 8cf9448c25b01ac24c42d64fdeb8967d 344 Gene3D G3DSA:3.20.20.100 1 344 1.3E-133 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VV93_v1c06120 8cf9448c25b01ac24c42d64fdeb8967d 344 SUPERFAMILY SSF51430 1 337 4.71E-107 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily VV93_v1c33630 3186872ebbaeb5992981fb62d605f0a0 323 Pfam PF00092 von Willebrand factor type A domain 87 279 2.2E-35 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c33630 3186872ebbaeb5992981fb62d605f0a0 323 SMART SM00327 85 286 2.0E-22 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c33630 3186872ebbaeb5992981fb62d605f0a0 323 SUPERFAMILY SSF53300 85 282 4.01E-40 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c33630 3186872ebbaeb5992981fb62d605f0a0 323 Gene3D G3DSA:3.40.50.410 84 286 8.7E-63 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c16740 e4163abc25b13c36d26c896b91f17cf7 81 Pfam PF07362 Post-segregation antitoxin CcdA 11 81 3.0E-28 T 11-10-2018 IPR009956 Post-segregation antitoxin CcdA VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 166 7.9E-52 T 11-10-2018 IPR022161 DNA helicase IV, N-terminal domain VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Gene3D G3DSA:3.40.50.300 395 527 2.8E-26 T 11-10-2018 VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Pfam PF00580 UvrD/REP helicase N-terminal domain 200 498 1.3E-37 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Gene3D G3DSA:3.40.50.300 594 670 1.0E-18 T 11-10-2018 VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Pfam PF13361 UvrD-like helicase C-terminal domain 596 667 5.4E-16 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 Gene3D G3DSA:3.40.50.300 193 336 5.8E-27 T 11-10-2018 VV93_v1c36300 b1fb21410e45ab76485e37222ea713ed 690 SUPERFAMILY SSF52540 198 681 1.59E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c40140 5430f39ad4efef9f691c3852f0b3cf94 119 SUPERFAMILY SSF52833 42 119 2.9E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c40140 5430f39ad4efef9f691c3852f0b3cf94 119 Pfam PF13417 Glutathione S-transferase, N-terminal domain 43 119 5.1E-11 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c40140 5430f39ad4efef9f691c3852f0b3cf94 119 Gene3D G3DSA:3.40.30.10 21 118 9.8E-14 T 11-10-2018 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 PRINTS PR01607 Apyrase family signature 8 26 3.9E-15 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 PRINTS PR01607 Apyrase family signature 213 230 3.9E-15 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 PRINTS PR01607 Apyrase family signature 232 255 3.9E-15 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 PRINTS PR01607 Apyrase family signature 511 530 3.9E-15 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 PRINTS PR01607 Apyrase family signature 272 292 3.9E-15 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 Gene3D G3DSA:3.60.21.10 1 366 3.5E-88 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 SUPERFAMILY SSF56300 5 317 6.12E-74 T 11-10-2018 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 Pfam PF00149 Calcineurin-like phosphoesterase 10 249 1.5E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 Gene3D G3DSA:3.90.780.10 367 573 7.5E-33 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 Pfam PF02872 5'-nucleotidase, C-terminal domain 369 536 1.2E-22 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c37360 21f428c70d528dad0df9a16f6bf32b15 574 SUPERFAMILY SSF55816 367 564 1.57E-39 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 1.5E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 31 6.9E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 SUPERFAMILY SSF54523 36 142 1.52E-38 T 11-10-2018 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 10 142 3.7E-58 T 11-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 4.2E-22 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 4.2E-22 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 Gene3D G3DSA:3.30.700.10 33 141 1.7E-45 T 11-10-2018 VV93_v1c01990 631576b031a72c900f84e30115144b9d 147 Pfam PF08334 Type II secretion system (T2SS), protein G 33 141 2.8E-43 T 11-10-2018 IPR013545 Type II secretion system protein G VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 Gene3D G3DSA:3.20.20.70 4 297 4.2E-109 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 138 168 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 6.7E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 6.7E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 6.7E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 6.7E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 PIRSF PIRSF001365 3 296 2.9E-94 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 SUPERFAMILY SSF51569 7 295 5.02E-101 T 11-10-2018 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 6 293 65.786 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 Pfam PF00701 Dihydrodipicolinate synthetase family 7 291 5.4E-109 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 43 60 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 9 292 2.9E-118 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 VV93_v1c22060 5cd79ae799de9335c005a5cf82fc5d31 297 SMART SM01130 6 295 3.6E-142 T 11-10-2018 IPR002220 DapA-like GO:0016829 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Pfam PF07244 Surface antigen variable number repeat 362 432 6.8E-6 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Gene3D G3DSA:3.10.20.310 358 432 2.3E-7 T 11-10-2018 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Pfam PF01103 Surface antigen 470 778 8.4E-5 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Pfam PF01734 Patatin-like phospholipase 52 242 5.6E-30 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Gene3D G3DSA:3.40.1090.10 31 139 3.9E-29 T 11-10-2018 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 Gene3D G3DSA:3.40.1090.10 156 297 8.7E-19 T 11-10-2018 VV93_v1c24670 229049f66d6b1d63e4c154b51ea0f9c8 779 SUPERFAMILY SSF52151 45 334 7.06E-59 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VV93_v1c33340 67c15cda9772fe324cd2e25e0b954fad 182 Gene3D G3DSA:1.10.1760.20 1 177 1.1E-19 T 11-10-2018 VV93_v1c33340 67c15cda9772fe324cd2e25e0b954fad 182 Hamap MF_01572 UPF0397 protein . 1 182 21.039 T 11-10-2018 IPR022914 Protein of unknown function UPF0397 VV93_v1c33340 67c15cda9772fe324cd2e25e0b954fad 182 Pfam PF07155 ECF-type riboflavin transporter, S component 3 171 5.1E-44 T 11-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 VV93_v1c33640 6bcf4aa5c65114f4f0984d66b37a63b2 156 Pfam PF14316 Domain of unknown function (DUF4381) 9 145 2.5E-34 T 11-10-2018 IPR025489 Protein of unknown function (DUF4381 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 Gene3D G3DSA:3.40.50.150 1 157 2.6E-51 T 11-10-2018 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 340 46.932 T 11-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 SUPERFAMILY SSF53335 157 323 4.48E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 Gene3D G3DSA:3.40.50.150 158 340 2.3E-43 T 11-10-2018 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 Pfam PF05175 Methyltransferase small domain 172 336 3.5E-61 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VV93_v1c24450 c3a22af4a456608500c0076f3b19426d 340 Pfam PF08468 Methyltransferase small domain N-terminal 8 163 2.5E-58 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 VV93_v1c41200 52be63fe7f4c230d09916a24ab6a3cf9 158 Gene3D G3DSA:1.10.1130.10 71 138 5.7E-30 T 11-10-2018 VV93_v1c41200 52be63fe7f4c230d09916a24ab6a3cf9 158 SUPERFAMILY SSF48695 39 155 7.54E-42 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily VV93_v1c41200 52be63fe7f4c230d09916a24ab6a3cf9 158 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 38 151 1.1E-49 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VV93_v1c41200 52be63fe7f4c230d09916a24ab6a3cf9 158 PIRSF PIRSF006105 2 158 1.6E-48 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VV93_v1c15410 50ecd4273eeb537960e652592e9eb392 380 Pfam PF05144 Phage replication protein CRI 62 249 9.1E-8 T 11-10-2018 IPR022686 Replication-associated protein G2P, N-terminal GO:0006260 VV93_v1c15410 50ecd4273eeb537960e652592e9eb392 380 Pfam PF05155 Phage X family 284 367 1.5E-23 T 11-10-2018 IPR022688 Replication-associated protein G2P, C-terminal GO:0006260 VV93_v1c15410 50ecd4273eeb537960e652592e9eb392 380 TIGRFAM TIGR01629 rep_II_X: phage/plasmid replication protein, gene II/X family 63 367 8.7E-11 T 11-10-2018 IPR006516 Replication-associated protein G2P GO:0006260 VV93_v1c38100 50ecd4273eeb537960e652592e9eb392 380 Pfam PF05144 Phage replication protein CRI 62 249 9.1E-8 T 11-10-2018 IPR022686 Replication-associated protein G2P, N-terminal GO:0006260 VV93_v1c38100 50ecd4273eeb537960e652592e9eb392 380 Pfam PF05155 Phage X family 284 367 1.5E-23 T 11-10-2018 IPR022688 Replication-associated protein G2P, C-terminal GO:0006260 VV93_v1c38100 50ecd4273eeb537960e652592e9eb392 380 TIGRFAM TIGR01629 rep_II_X: phage/plasmid replication protein, gene II/X family 63 367 8.7E-11 T 11-10-2018 IPR006516 Replication-associated protein G2P GO:0006260 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Gene3D G3DSA:3.50.50.60 265 663 1.6E-134 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 SUPERFAMILY SSF51905 266 663 3.04E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 5 661 27.689 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Gene3D G3DSA:3.40.50.150 7 253 4.4E-104 T 11-10-2018 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 116 242 4.9E-45 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Pfam PF01266 FAD dependent oxidoreductase 266 636 3.3E-44 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 Gene3D G3DSA:3.30.9.10 349 573 1.6E-134 T 11-10-2018 VV93_v1c21330 2e122eb75c08a3830845b1f033121461 672 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 266 666 8.4E-155 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 Pfam PF05175 Methyltransferase small domain 42 135 6.2E-18 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 9 239 52.965 T 11-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 141 165 4.9E-6 T 11-10-2018 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 46 60 4.9E-6 T 11-10-2018 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 111 123 4.9E-6 T 11-10-2018 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 Gene3D G3DSA:3.40.50.150 7 235 1.1E-56 T 11-10-2018 VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 SUPERFAMILY SSF53335 34 196 8.36E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c06010 da786924ee62fe880b8e9c416ca9000e 239 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 114 120 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c02780 4576903cd7f4107f8bdee5f1cc5fa10a 78 Pfam PF00830 Ribosomal L28 family 3 62 1.1E-25 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02780 4576903cd7f4107f8bdee5f1cc5fa10a 78 SUPERFAMILY SSF143800 2 76 1.35E-29 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02780 4576903cd7f4107f8bdee5f1cc5fa10a 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 4.6E-27 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c02780 4576903cd7f4107f8bdee5f1cc5fa10a 78 Gene3D G3DSA:2.30.170.40 2 78 2.0E-32 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02780 4576903cd7f4107f8bdee5f1cc5fa10a 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.065 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 SUPERFAMILY SSF103190 54 184 6.67E-21 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 SUPERFAMILY SSF55874 443 594 2.88E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Pfam PF02743 Cache domain 43 215 2.7E-14 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Gene3D G3DSA:1.10.287.130 349 436 1.0E-14 T 11-10-2018 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Gene3D G3DSA:3.30.565.10 444 596 7.4E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Gene3D G3DSA:3.30.450.20 59 176 2.7E-59 T 11-10-2018 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 SMART SM00388 373 441 0.002 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 571 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 552 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 577 590 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 538 4.4E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 PIRSF PIRSF036431 2 600 2.1E-175 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Gene3D G3DSA:3.30.450.20 48 265 2.7E-59 T 11-10-2018 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 SUPERFAMILY SSF47384 358 439 2.75E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 SMART SM00387 485 593 1.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c45130 8196ba2a0b23a77048d7aedb3821d787 603 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 488 590 1.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 SUPERFAMILY SSF46785 5 140 9.71E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 Pfam PF01047 MarR family 31 89 1.7E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 5.0E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 5.0E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 Gene3D G3DSA:1.10.10.10 2 137 2.2E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c18690 147742d2710f5769c0228ab22310a6e3 161 SMART SM00347 24 124 1.6E-18 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 SUPERFAMILY SSF56601 30 466 2.67E-84 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 Gene3D G3DSA:3.50.80.20 86 178 3.2E-11 T 11-10-2018 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 Gene3D G3DSA:3.40.710.10 239 470 1.4E-56 T 11-10-2018 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 48 439 5.1E-98 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 279 301 3.3E-26 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 338 352 3.3E-26 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 417 430 3.3E-26 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 62 81 3.3E-26 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 353 367 3.3E-26 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c24360 f4c0094492eca7845712e696ed5607e5 476 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 36 451 4.4E-98 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 VV93_v1c05630 c1826fcdbf939b92cffd13fb32b7f079 152 Pfam PF05258 Protein of unknown function (DUF721) 11 90 1.9E-10 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 SUPERFAMILY SSF50331 235 353 1.24E-20 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 Gene3D G3DSA:2.40.50.940 221 347 1.6E-27 T 11-10-2018 VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 Gene3D G3DSA:2.40.50.140 279 338 1.6E-27 T 11-10-2018 VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 SMART SM00382 27 210 8.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 SUPERFAMILY SSF52540 1 241 2.1E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 Gene3D G3DSA:3.40.50.300 1 220 1.7E-65 T 11-10-2018 VV93_v1c14170 6575f8b799c638020f789d00cf1ebb30 372 Pfam PF00005 ABC transporter 19 160 1.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 4.0E-69 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 Gene3D G3DSA:3.30.230.10 75 167 5.2E-36 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 12 75 2.7E-29 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 Gene3D G3DSA:3.30.160.20 2 74 4.0E-32 T 11-10-2018 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 SUPERFAMILY SSF54768 8 76 4.08E-24 T 11-10-2018 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 158 1.9E-29 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 29 61 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 SUPERFAMILY SSF54211 80 159 6.57E-27 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c03630 c616a9c7dd2fbae50df050b059a3a974 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 34.696 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 Pfam PF00312 Ribosomal protein S15 8 88 4.0E-36 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 2.7E-38 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.574 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 SMART SM01387 8 88 5.8E-52 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 SUPERFAMILY SSF47060 3 89 1.35E-34 T 11-10-2018 IPR009068 S15/NS1, RNA-binding VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 2.0E-30 T 11-10-2018 VV93_v1c24220 a0606f8e5638701e386610cb7016c917 89 Gene3D G3DSA:1.10.287.10 2 89 4.0E-35 T 11-10-2018 VV93_v1c33230 9235aa7c9977b2b2e704604034e1fc95 115 SUPERFAMILY SSF47413 5 87 7.41E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c33230 9235aa7c9977b2b2e704604034e1fc95 115 Gene3D G3DSA:1.10.260.40 2 87 4.3E-10 T 11-10-2018 VV93_v1c30770 e491d3a5dc5bf4946f834d52e2577aab 146 PIRSF PIRSF015875 1 146 3.4E-44 T 11-10-2018 IPR007418 Protein of unknown function DUF474 VV93_v1c16280 417409c42d2e74a343d580ba2d0cbe6a 283 SUPERFAMILY SSF53098 117 281 3.79E-40 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c16280 417409c42d2e74a343d580ba2d0cbe6a 283 Gene3D G3DSA:3.30.420.10 123 279 4.2E-13 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c16280 417409c42d2e74a343d580ba2d0cbe6a 283 Pfam PF00665 Integrase core domain 125 237 1.1E-28 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 Pfam PF00033 Cytochrome b/b6/petB 23 211 6.5E-66 T 11-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 295 396 5.5E-40 T 11-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 Gene3D G3DSA:1.20.810.10 1 421 1.6E-149 T 11-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 SUPERFAMILY SSF81342 6 296 5.97E-92 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 PIRSF PIRSF038885 1 421 1.5E-151 T 11-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 VV93_v1c05380 93f2fb93055df6939c8df7e296ca288a 421 SUPERFAMILY SSF81648 297 411 2.62E-33 T 11-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 VV93_v1c38050 4e5a9507358b7712c2cd1342975b0232 127 SUPERFAMILY SSF54611 2 124 1.05E-17 T 11-10-2018 IPR035958 SecB-like superfamily VV93_v1c38050 4e5a9507358b7712c2cd1342975b0232 127 Gene3D G3DSA:3.10.420.10 22 127 1.1E-12 T 11-10-2018 IPR035958 SecB-like superfamily VV93_v1c38050 4e5a9507358b7712c2cd1342975b0232 127 Pfam PF02556 Preprotein translocase subunit SecB 45 122 8.6E-13 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c23070 6362a779be0f188faa355360b81c4816 414 Pfam PF03116 NQR2, RnfD, RnfE family 41 406 1.5E-108 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VV93_v1c23070 6362a779be0f188faa355360b81c4816 414 PIRSF PIRSF016055 1 414 9.4E-201 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VV93_v1c23070 6362a779be0f188faa355360b81c4816 414 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.469 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VV93_v1c23070 6362a779be0f188faa355360b81c4816 414 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 9.0E-205 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 VV93_v1c39480 55f239d0ae5b17694393dd79621da961 114 Gene3D G3DSA:3.20.160.10 1 114 2.4E-51 T 11-10-2018 IPR038604 Type III effector HopJ superfamily VV93_v1c39480 55f239d0ae5b17694393dd79621da961 114 Pfam PF08888 HopJ type III effector protein 4 111 3.1E-50 T 11-10-2018 IPR014984 HopJ type III effector protein VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 SUPERFAMILY SSF55681 78 269 2.29E-60 T 11-10-2018 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Gene3D G3DSA:1.10.10.10 2 65 5.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Gene3D G3DSA:2.30.30.100 272 322 8.3E-15 T 11-10-2018 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 3.9E-21 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 8 318 32.518 T 11-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 318 5.0E-68 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Gene3D G3DSA:3.30.930.10 67 271 2.8E-68 T 11-10-2018 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 SUPERFAMILY SSF50037 273 318 5.95E-9 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 SUPERFAMILY SSF46785 9 61 8.37E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Pfam PF08279 HTH domain 9 60 9.0E-12 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 VV93_v1c28850 7b58d4828b41e6fb4cb14bd2ab7adfc1 322 Pfam PF02237 Biotin protein ligase C terminal domain 274 318 4.2E-9 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 VV93_v1c06220 671319ff820140eec2995efba79e937f 296 SUPERFAMILY SSF46785 2 85 1.27E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c06220 671319ff820140eec2995efba79e937f 296 SUPERFAMILY SSF53850 91 288 6.15E-24 T 11-10-2018 VV93_v1c06220 671319ff820140eec2995efba79e937f 296 Pfam PF03466 LysR substrate binding domain 96 288 6.5E-12 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c06220 671319ff820140eec2995efba79e937f 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 5.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c06220 671319ff820140eec2995efba79e937f 296 Gene3D G3DSA:1.10.10.10 4 92 8.7E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c06220 671319ff820140eec2995efba79e937f 296 Gene3D G3DSA:3.40.190.290 95 292 2.2E-8 T 11-10-2018 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 12 315 7.3E-145 T 11-10-2018 IPR019857 CRISPR-associated protein Cas1, YPEST subtype GO:0004520|GO:0043571|GO:0046872 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 Gene3D G3DSA:3.100.10.20 11 109 3.1E-47 T 11-10-2018 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 16 324 16.139 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 19 293 8.5E-59 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 Gene3D G3DSA:1.20.120.920 110 324 1.2E-70 T 11-10-2018 VV93_v1c04790 4889c3078d60488f08ca953b5f179916 329 Pfam PF01867 CRISPR associated protein Cas1 24 293 3.7E-14 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 VV93_v1c40390 31a2ffc8d67a15569a41ac50e7ced0cd 330 Gene3D G3DSA:1.10.10.60 9 59 2.1E-18 T 11-10-2018 VV93_v1c40390 31a2ffc8d67a15569a41ac50e7ced0cd 330 SUPERFAMILY SSF100950 70 320 1.34E-64 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c40390 31a2ffc8d67a15569a41ac50e7ced0cd 330 Gene3D G3DSA:3.40.50.1360 60 325 9.4E-81 T 11-10-2018 VV93_v1c40390 31a2ffc8d67a15569a41ac50e7ced0cd 330 Pfam PF04198 Putative sugar-binding domain 66 320 4.7E-77 T 11-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 VV93_v1c04440 f990a008ad4ab5b8419a4dd60d7c3ac3 126 Hamap MF_00791 Protein ApaG [apaG]. 1 126 31.663 T 11-10-2018 IPR023065 Uncharacterised protein family ApaG VV93_v1c04440 f990a008ad4ab5b8419a4dd60d7c3ac3 126 Gene3D G3DSA:2.60.40.1470 1 126 2.0E-46 T 11-10-2018 IPR036767 ApaG domain superfamily VV93_v1c04440 f990a008ad4ab5b8419a4dd60d7c3ac3 126 SUPERFAMILY SSF110069 6 126 1.44E-46 T 11-10-2018 IPR036767 ApaG domain superfamily VV93_v1c04440 f990a008ad4ab5b8419a4dd60d7c3ac3 126 Pfam PF04379 ApaG domain 18 103 1.1E-32 T 11-10-2018 IPR007474 ApaG domain VV93_v1c31940 45325e86f7f4289ac0c29fca169e86a2 573 SUPERFAMILY SSF53850 117 567 9.95E-45 T 11-10-2018 VV93_v1c31940 45325e86f7f4289ac0c29fca169e86a2 573 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 176 306 5.1E-15 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c31940 45325e86f7f4289ac0c29fca169e86a2 573 Gene3D G3DSA:3.10.105.10 384 541 2.5E-7 T 11-10-2018 VV93_v1c31940 45325e86f7f4289ac0c29fca169e86a2 573 Gene3D G3DSA:3.40.190.10 105 312 1.6E-23 T 11-10-2018 VV93_v1c31940 45325e86f7f4289ac0c29fca169e86a2 573 Pfam PF12793 Sugar transport-related sRNA regulator N-term 20 101 4.1E-15 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 SUPERFAMILY SSF53254 2 183 4.19E-45 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 SMART SM00855 3 157 2.0E-18 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 176 4.5E-38 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 PIRSF PIRSF000709 1 196 7.5E-11 T 11-10-2018 VV93_v1c45310 162fdbc2dca9a45717f570289f8f53a3 204 Gene3D G3DSA:3.40.50.1240 2 190 1.4E-43 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 Gene3D G3DSA:3.40.50.300 214 427 3.4E-51 T 11-10-2018 VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 Gene3D G3DSA:3.40.50.300 1 212 9.5E-72 T 11-10-2018 VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 SMART SM00487 20 223 1.5E-50 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 Pfam PF00271 Helicase conserved C-terminal domain 236 341 8.2E-31 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 SUPERFAMILY SSF52540 73 359 1.78E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 SMART SM00490 260 341 7.2E-32 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c33460 8e3ff476aea0dceef53645d55236c4fb 443 Pfam PF00270 DEAD/DEAH box helicase 25 196 1.5E-46 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 Pfam PF07687 Peptidase dimerisation domain 211 296 4.4E-9 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PIRSF PIRSF016599 5 489 1.8E-216 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 Pfam PF01546 Peptidase family M20/M25/M40 77 477 2.0E-20 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 SUPERFAMILY SSF53187 15 486 3.67E-62 T 11-10-2018 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 13 486 8.7E-183 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 Gene3D G3DSA:3.40.630.10 1 230 4.0E-65 T 11-10-2018 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 Gene3D G3DSA:3.40.630.10 370 490 1.1E-23 T 11-10-2018 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 454 476 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 432 448 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 163 181 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 210 227 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 255 274 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 84 103 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 105 123 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 367 385 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c07920 2fc7f36266bafe1e56c0b92a1e55d037 490 PRINTS PR00934 X-His dipeptidase (M25) signature 139 156 2.3E-88 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 VV93_v1c14660 3bf2dee03751fa1df136fef12be2292d 252 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 4.4E-42 T 11-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 VV93_v1c14660 3bf2dee03751fa1df136fef12be2292d 252 SUPERFAMILY SSF69593 4 242 6.28E-59 T 11-10-2018 VV93_v1c14660 3bf2dee03751fa1df136fef12be2292d 252 Pfam PF01553 Acyltransferase 56 180 2.5E-32 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c14660 3bf2dee03751fa1df136fef12be2292d 252 SMART SM00563 67 182 4.4E-40 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c20770 e40c088cf98cd3008718670a92678c7c 180 Gene3D G3DSA:3.40.50.1820 1 180 1.6E-19 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c20770 e40c088cf98cd3008718670a92678c7c 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 49.286 T 11-10-2018 IPR022987 Uncharacterised protein family UPF0227 VV93_v1c20770 e40c088cf98cd3008718670a92678c7c 180 SUPERFAMILY SSF53474 2 176 5.92E-6 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c20770 e40c088cf98cd3008718670a92678c7c 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 9.8E-71 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VV93_v1c11090 91379f31d8e9bf2a4e82e0918134e86e 355 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 355 3.6E-138 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VV93_v1c11090 91379f31d8e9bf2a4e82e0918134e86e 355 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 3 355 27.045 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 VV93_v1c11090 91379f31d8e9bf2a4e82e0918134e86e 355 Pfam PF03116 NQR2, RnfD, RnfE family 6 354 4.9E-105 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 VV93_v1c35600 58f96b9ed1c235ad43decc44c96fbda1 332 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 56 328 1.8E-75 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c35600 58f96b9ed1c235ad43decc44c96fbda1 332 SUPERFAMILY SSF53187 38 330 1.82E-51 T 11-10-2018 VV93_v1c35600 58f96b9ed1c235ad43decc44c96fbda1 332 Gene3D G3DSA:3.40.630.10 14 330 2.2E-70 T 11-10-2018 VV93_v1c35600 58f96b9ed1c235ad43decc44c96fbda1 332 PIRSF PIRSF039012 6 332 1.9E-101 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c42440 a5c67049f2e95b138fa826057fcb393a 147 SUPERFAMILY SSF55804 1 146 8.24E-42 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c42440 a5c67049f2e95b138fa826057fcb393a 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 146 6.3E-35 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c42440 a5c67049f2e95b138fa826057fcb393a 147 Gene3D G3DSA:3.40.930.10 1 147 2.2E-56 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c42440 a5c67049f2e95b138fa826057fcb393a 147 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 451 5.1E-60 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 SUPERFAMILY SSF53067 5 256 3.99E-92 T 11-10-2018 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 9.1E-227 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 253 5.8E-85 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 SUPERFAMILY SSF53067 255 497 6.29E-85 T 11-10-2018 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 PIRSF PIRSF000538 4 502 6.0E-175 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 Gene3D G3DSA:3.30.420.40 255 500 6.6E-93 T 11-10-2018 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 Gene3D G3DSA:3.30.420.40 2 254 3.8E-111 T 11-10-2018 VV93_v1c23380 9c0b01d35eddd095aaa003f6766b3ffc 505 Hamap MF_00186 Glycerol kinase [glpK]. 4 498 57.985 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 VV93_v1c31580 4f4beb8d393240243657d8162c6e4adb 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 324 2.4E-47 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c21960 ee8cbc7e16314a979d4e259cc0dec802 300 SUPERFAMILY SSF54909 1 296 4.65E-93 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c21960 ee8cbc7e16314a979d4e259cc0dec802 300 Pfam PF04261 Dyp-type peroxidase family 5 293 3.4E-89 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VV93_v1c21960 ee8cbc7e16314a979d4e259cc0dec802 300 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 293 3.3E-85 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.0E-168 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Gene3D G3DSA:1.10.150.300 120 200 2.0E-151 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 SUPERFAMILY SSF52540 3 301 1.14E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Gene3D G3DSA:3.40.50.300 4 278 2.0E-151 T 11-10-2018 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 PIRSF PIRSF006641 1 363 1.2E-157 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 SUPERFAMILY SSF81271 279 360 1.24E-36 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 4.4E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 4.4E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 4.4E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.4E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.169 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.2E-39 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Pfam PF01926 50S ribosome-binding GTPase 5 121 1.0E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c08560 6e72595684e0a7cc7c62c67566fab663 363 Gene3D G3DSA:3.10.20.30 48 362 2.0E-151 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c05120 a47e7cb7019d8aefc1146a0ebcacf812 267 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 257 1.7E-72 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VV93_v1c05120 a47e7cb7019d8aefc1146a0ebcacf812 267 Pfam PF02673 Bacitracin resistance protein BacA 6 258 1.6E-81 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VV93_v1c05120 a47e7cb7019d8aefc1146a0ebcacf812 267 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 264 17.582 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 VV93_v1c38680 c8d7d787216311427998d02d2c0bf987 107 Gene3D G3DSA:2.102.10.10 1 107 2.7E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c38680 c8d7d787216311427998d02d2c0bf987 107 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 4 106 3.7E-35 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VV93_v1c38680 c8d7d787216311427998d02d2c0bf987 107 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 105 1.7E-38 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 VV93_v1c38680 c8d7d787216311427998d02d2c0bf987 107 SUPERFAMILY SSF50022 2 106 2.24E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 ProSitePatterns PS00455 Putative AMP-binding domain signature. 143 154 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 SMART SM01236 577 678 7.4E-8 T 11-10-2018 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 SUPERFAMILY SSF56801 2 488 1.23E-83 T 11-10-2018 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 Gene3D G3DSA:1.20.910.10 506 730 5.0E-56 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 Gene3D G3DSA:3.40.50.12780 4 371 2.2E-69 T 11-10-2018 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 Pfam PF00501 AMP-binding enzyme 143 378 1.2E-42 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 Pfam PF00501 AMP-binding enzyme 9 110 2.0E-13 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 SUPERFAMILY SSF48613 494 722 1.53E-59 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 VV93_v1c31190 9c905cb21123303cf3ea7fdadd4b5200 730 Pfam PF14518 Iron-containing redox enzyme 543 713 3.7E-24 T 11-10-2018 VV93_v1c22350 55c5bd6e46dfb94fe50912562e9fc064 191 Gene3D G3DSA:3.40.50.360 1 191 4.0E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c22350 55c5bd6e46dfb94fe50912562e9fc064 191 SUPERFAMILY SSF52218 6 188 1.57E-53 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c22350 55c5bd6e46dfb94fe50912562e9fc064 191 Pfam PF03358 NADPH-dependent FMN reductase 49 136 1.7E-9 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 VV93_v1c22350 55c5bd6e46dfb94fe50912562e9fc064 191 ProSitePatterns PS00201 Flavodoxin signature. 9 25 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 58.868 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Gene3D G3DSA:3.40.1190.10 91 313 1.3E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Pfam PF08245 Mur ligase middle domain 108 291 2.3E-21 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 388 5.0E-12 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Gene3D G3DSA:3.40.50.720 1 90 1.3E-35 T 11-10-2018 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 SUPERFAMILY SSF53244 311 448 1.96E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 448 9.5E-260 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 SUPERFAMILY SSF53623 97 308 5.63E-53 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Pfam PF01225 Mur ligase family, catalytic domain 2 101 1.2E-19 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 Gene3D G3DSA:3.90.190.20 314 450 3.0E-31 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 VV93_v1c04010 3104fdf9413f854a3e56c01288b37089 453 SUPERFAMILY SSF51984 1 89 3.66E-23 T 11-10-2018 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 10 227 1.4E-74 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 ProSitePatterns PS01218 TatC family signature. 155 174 - T 11-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 5 239 15.886 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 Pfam PF00902 Sec-independent protein translocase protein (TatC) 13 222 1.3E-66 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 86 104 1.2E-51 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 9 36 1.2E-51 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 104 130 1.2E-51 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c01690 d57bda5eacdee73a0d468b94d48edfad 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 155 183 1.2E-51 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 VV93_v1c37690 2c2d90c1470bb1fc5f4c5d76ed757338 195 Pfam PF13689 Domain of unknown function (DUF4154) 53 185 3.4E-26 T 11-10-2018 IPR025293 YfiR-like VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 SUPERFAMILY SSF89360 16 112 2.75E-22 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 193 2.0E-28 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 Gene3D G3DSA:3.30.300.130 116 204 3.8E-18 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 Pfam PF01521 Iron-sulphur cluster biosynthesis 16 114 1.4E-12 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 Gene3D G3DSA:2.60.300.12 15 113 1.0E-13 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 SUPERFAMILY SSF117916 110 199 6.98E-22 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 Pfam PF01106 NifU-like domain 126 192 6.0E-19 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 17 207 2.7E-95 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VV93_v1c02090 1028a2059532b700d5850ac6d2f8db91 207 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 16 207 44.072 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 VV93_v1c05170 84adb46f330130d5367bc436d729c106 226 Pfam PF01865 Protein of unknown function DUF47 7 223 3.5E-66 T 11-10-2018 IPR018445 Putative phosphate transport regulator VV93_v1c05170 84adb46f330130d5367bc436d729c106 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 3 225 2.7E-68 T 11-10-2018 IPR002727 Protein of unknown function DUF47 VV93_v1c05170 84adb46f330130d5367bc436d729c106 226 Gene3D G3DSA:1.20.58.220 1 225 9.2E-62 T 11-10-2018 IPR038078 PhoU-like domain superfamily VV93_v1c05170 84adb46f330130d5367bc436d729c106 226 SUPERFAMILY SSF109755 32 216 3.84E-15 T 11-10-2018 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 Pfam PF03466 LysR substrate binding domain 91 293 4.5E-22 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c41630 63140669ff20c0828d217907841838ba 313 Gene3D G3DSA:3.40.190.10 90 291 1.3E-50 T 11-10-2018 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 Gene3D G3DSA:1.10.10.10 1 86 1.8E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41630 63140669ff20c0828d217907841838ba 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 3.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 SUPERFAMILY SSF46785 2 84 1.51E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41630 63140669ff20c0828d217907841838ba 313 Gene3D G3DSA:3.40.190.10 168 267 1.3E-50 T 11-10-2018 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 SUPERFAMILY SSF53850 88 293 2.71E-39 T 11-10-2018 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c41630 63140669ff20c0828d217907841838ba 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 Gene3D G3DSA:2.40.30.170 248 324 1.6E-42 T 11-10-2018 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 Gene3D G3DSA:2.40.50.100 57 247 1.6E-42 T 11-10-2018 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 SUPERFAMILY SSF111369 200 283 2.88E-5 T 11-10-2018 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 Gene3D G3DSA:1.10.287.470 90 212 1.6E-42 T 11-10-2018 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 Pfam PF00529 HlyD membrane-fusion protein of T1SS 31 316 1.5E-6 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 SUPERFAMILY SSF111369 56 178 1.96E-11 T 11-10-2018 VV93_v1c31470 20db21b0922f0c65c3ea5a15c2050bc5 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 286 1.1E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c31990 18113230bcb5853a1f555da258876a9c 226 Pfam PF00027 Cyclic nucleotide-binding domain 36 112 6.1E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c31990 18113230bcb5853a1f555da258876a9c 226 Gene3D G3DSA:2.60.120.10 18 145 1.5E-14 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c31990 18113230bcb5853a1f555da258876a9c 226 SUPERFAMILY SSF51206 18 142 4.45E-19 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c00740 e28b9e8347146e60fed1caedf10789d3 844 PIRSF PIRSF001444 1 844 0.0 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VV93_v1c00740 e28b9e8347146e60fed1caedf10789d3 844 Pfam PF01295 Adenylate cyclase, class-I 226 829 1.4E-256 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 VV93_v1c00740 e28b9e8347146e60fed1caedf10789d3 844 Pfam PF12633 Adenylate cyclase NT domain 5 198 4.0E-76 T 11-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 VV93_v1c43740 7472a4d0f1e94808e9938542c8f46860 115 Pfam PF11777 Protein of unknown function (DUF3316) 2 110 1.9E-24 T 11-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VV93_v1c43740 7472a4d0f1e94808e9938542c8f46860 115 PIRSF PIRSF028299 1 114 4.5E-44 T 11-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 133 209 6.5E-22 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 SUPERFAMILY SSF74653 124 202 5.1E-24 T 11-10-2018 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 134 209 6.5E-19 T 11-10-2018 IPR006260 TonB/TolA, C-terminal VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 Gene3D G3DSA:3.30.1150.10 108 211 9.2E-27 T 11-10-2018 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 PRINTS PR01374 Gram-negative bacterial tonB protein signature 60 70 2.4E-16 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 PRINTS PR01374 Gram-negative bacterial tonB protein signature 148 166 2.4E-16 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 PRINTS PR01374 Gram-negative bacterial tonB protein signature 127 148 2.4E-16 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c38590 736e0eb725f9b5fd716ff0e6f5e800ce 212 PRINTS PR01374 Gram-negative bacterial tonB protein signature 167 184 2.4E-16 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 Gene3D G3DSA:3.40.640.10 35 295 7.8E-162 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 PIRSF PIRSF005572 21 403 3.3E-51 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 6 401 2.0E-167 T 11-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 SUPERFAMILY SSF53383 2 400 1.46E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 2 403 7.5E-154 T 11-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 Pfam PF00266 Aminotransferase class-V 24 392 9.2E-147 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c23200 3f43dcd1d3536f5be1f7da5d5af08f53 403 Gene3D G3DSA:3.90.1150.10 7 396 7.8E-162 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 272 9.5E-75 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Gene3D G3DSA:3.40.50.300 282 637 4.2E-133 T 11-10-2018 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 TIGRFAM TIGR01075 uvrD: DNA helicase II 7 722 0.0 T 11-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Pfam PF13361 UvrD-like helicase C-terminal domain 278 617 2.9E-77 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Gene3D G3DSA:1.10.486.10 383 539 4.2E-133 T 11-10-2018 VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 SUPERFAMILY SSF52540 8 643 1.48E-180 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Gene3D G3DSA:1.10.10.160 115 188 1.3E-97 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily VV93_v1c29130 ddd0578253e54244d15762d5b27b8776 724 Gene3D G3DSA:3.40.50.300 11 274 1.3E-97 T 11-10-2018 VV93_v1c40340 ec1df1bd849c6c938c72cfcc4f9a8819 258 SUPERFAMILY SSF69572 4 249 1.23E-85 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VV93_v1c40340 ec1df1bd849c6c938c72cfcc4f9a8819 258 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 8 248 7.9E-132 T 11-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 VV93_v1c40340 ec1df1bd849c6c938c72cfcc4f9a8819 258 Pfam PF00899 ThiF family 12 245 1.1E-63 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VV93_v1c40340 ec1df1bd849c6c938c72cfcc4f9a8819 258 Gene3D G3DSA:3.40.50.720 4 255 2.1E-88 T 11-10-2018 VV93_v1c33520 64995c64019be0a03d97619f2bdee9a9 483 Pfam PF07603 Protein of unknown function (DUF1566) 296 435 3.5E-17 T 11-10-2018 IPR011460 Protein of unknown function DUF1566 VV93_v1c18880 7f1d7469f298b0f4c0d12526dc645d19 202 Pfam PF02810 SEC-C motif 184 202 2.0E-10 T 11-10-2018 IPR004027 SEC-C motif VV93_v1c18880 7f1d7469f298b0f4c0d12526dc645d19 202 SUPERFAMILY SSF103642 182 201 2.62E-7 T 11-10-2018 VV93_v1c18880 7f1d7469f298b0f4c0d12526dc645d19 202 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 135 1.6E-5 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 VV93_v1c18880 7f1d7469f298b0f4c0d12526dc645d19 202 Gene3D G3DSA:3.10.450.50 145 202 1.3E-9 T 11-10-2018 VV93_v1c27520 6a68d6b2e7b35c8c36e378d7548e0643 115 Gene3D G3DSA:3.30.429.10 1 115 8.3E-34 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily VV93_v1c27520 6a68d6b2e7b35c8c36e378d7548e0643 115 SUPERFAMILY SSF55331 2 115 2.0E-36 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily VV93_v1c27520 6a68d6b2e7b35c8c36e378d7548e0643 115 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 90 1.8E-6 T 11-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 VV93_v1c03310 6ea0131b0cf349f73a6d092a49a1a416 290 Gene3D G3DSA:3.40.50.720 1 277 5.1E-44 T 11-10-2018 VV93_v1c03310 6ea0131b0cf349f73a6d092a49a1a416 290 Pfam PF04321 RmlD substrate binding domain 1 163 3.9E-28 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 VV93_v1c03310 6ea0131b0cf349f73a6d092a49a1a416 290 SUPERFAMILY SSF51735 1 284 2.9E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 Gene3D G3DSA:3.40.50.620 13 288 7.3E-107 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 16 263 3.7E-41 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 13 295 40.859 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 SUPERFAMILY SSF52374 13 291 2.95E-85 T 11-10-2018 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 13 276 9.9E-113 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 175 185 9.7E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 16 28 9.7E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 30 41 9.7E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 191 199 9.7E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 58 9.7E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 VV93_v1c24720 64693093181d3851e4c5f667305d569a 303 Gene3D G3DSA:3.40.50.620 88 223 7.3E-107 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c45190 461eed152fe5edb158e4d781a2f4afc1 184 SUPERFAMILY SSF52218 2 184 1.21E-46 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c45190 461eed152fe5edb158e4d781a2f4afc1 184 Pfam PF03358 NADPH-dependent FMN reductase 25 135 4.3E-13 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 VV93_v1c45190 461eed152fe5edb158e4d781a2f4afc1 184 Gene3D G3DSA:3.40.50.360 1 184 7.1E-52 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 ProSitePatterns PS00855 Signal peptidases II signature. 109 121 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 Pfam PF01252 Signal peptidase (SPase) II 19 161 3.9E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 10 167 16.785 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 106 121 3.0E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 58 66 3.0E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 142 158 3.0E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c06280 a83a569dbcfae7dba31f860c5584c37f 168 TIGRFAM TIGR00077 lspA: signal peptidase II 6 167 8.1E-49 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 VV93_v1c43910 7219313b3ebde47261abb14199e2ab5c 351 Gene3D G3DSA:3.60.60.10 4 351 2.3E-81 T 11-10-2018 VV93_v1c43910 7219313b3ebde47261abb14199e2ab5c 351 SUPERFAMILY SSF56235 4 321 8.49E-57 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal VV93_v1c43910 7219313b3ebde47261abb14199e2ab5c 351 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 4 301 1.7E-30 T 11-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 Pfam PF02107 Flagellar L-ring protein 80 256 8.0E-58 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 259 27.909 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 PRINTS PR01008 Flagellar L-ring protein signature 222 236 6.6E-21 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 PRINTS PR01008 Flagellar L-ring protein signature 238 252 6.6E-21 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 PRINTS PR01008 Flagellar L-ring protein signature 102 114 6.6E-21 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 PRINTS PR01008 Flagellar L-ring protein signature 201 217 6.6E-21 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c08940 a56ced8cc3b3f8098253bf11700e15bc 259 PRINTS PR01008 Flagellar L-ring protein signature 175 190 6.6E-21 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 VV93_v1c28030 a813cc0892ef92d5cb7cb36bf6c528fb 154 Gene3D G3DSA:3.40.50.300 1 152 1.0E-48 T 11-10-2018 VV93_v1c28030 a813cc0892ef92d5cb7cb36bf6c528fb 154 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 139 2.8E-51 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VV93_v1c28030 a813cc0892ef92d5cb7cb36bf6c528fb 154 SUPERFAMILY SSF52540 27 149 2.37E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c28030 a813cc0892ef92d5cb7cb36bf6c528fb 154 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 1.8E-42 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 22.14 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 4.0E-21 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 PIRSF PIRSF002211 1 58 8.9E-29 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 SUPERFAMILY SSF55129 1 58 2.75E-23 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 Gene3D G3DSA:3.30.1390.20 1 58 4.5E-28 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VV93_v1c03640 e59cf10e460999beb540b76881ed0a06 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 4.5E-27 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c37570 c8fb47c169e19e8fbcc46f7349806f71 204 SUPERFAMILY SSF46565 125 203 1.06E-12 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c37570 c8fb47c169e19e8fbcc46f7349806f71 204 Pfam PF00226 DnaJ domain 158 203 1.3E-9 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c37570 c8fb47c169e19e8fbcc46f7349806f71 204 SMART SM00271 152 204 8.8E-8 T 11-10-2018 IPR001623 DnaJ domain VV93_v1c37570 c8fb47c169e19e8fbcc46f7349806f71 204 Gene3D G3DSA:1.10.287.110 147 204 6.8E-12 T 11-10-2018 IPR036869 Chaperone J-domain superfamily VV93_v1c37570 c8fb47c169e19e8fbcc46f7349806f71 204 Pfam PF12339 DNA-J related protein 16 137 6.6E-42 T 11-10-2018 IPR021059 DnaJ-related protein, N-terminal VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 Gene3D G3DSA:3.30.950.10 158 286 2.2E-35 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 44 252 2.6E-45 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 Gene3D G3DSA:3.40.1010.10 40 157 1.1E-42 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 47 61 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 42 276 2.4E-87 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c38940 4be2acc76dc258321d6a33427140a7ed 297 SUPERFAMILY SSF53790 40 280 4.71E-69 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VV93_v1c34250 50839b2e2eac6900d473ac9d0cfb1b80 130 SUPERFAMILY SSF51316 6 109 5.96E-20 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c34250 50839b2e2eac6900d473ac9d0cfb1b80 130 Gene3D G3DSA:3.90.1590.10 2 95 5.4E-8 T 11-10-2018 VV93_v1c34250 50839b2e2eac6900d473ac9d0cfb1b80 130 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 109 7.7E-12 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 Gene3D G3DSA:1.20.58.220 119 228 1.2E-34 T 11-10-2018 IPR038078 PhoU-like domain superfamily VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 Gene3D G3DSA:1.20.58.220 2 118 1.4E-39 T 11-10-2018 IPR038078 PhoU-like domain superfamily VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 PIRSF PIRSF003107 4 223 1.2E-68 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 10 219 1.2E-74 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 SUPERFAMILY SSF109755 10 226 1.36E-69 T 11-10-2018 VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 Pfam PF01895 PhoU domain 23 108 3.5E-21 T 11-10-2018 IPR026022 PhoU domain VV93_v1c06780 9cbc2826b753981ffe4f664b273b8532 232 Pfam PF01895 PhoU domain 128 210 3.1E-17 T 11-10-2018 IPR026022 PhoU domain VV93_v1c30810 52504a0e641559205fac127efe730ae1 149 SUPERFAMILY SSF110087 3 141 1.57E-45 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily VV93_v1c30810 52504a0e641559205fac127efe730ae1 149 Gene3D G3DSA:2.60.40.1890 29 144 2.9E-39 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily VV93_v1c30810 52504a0e641559205fac127efe730ae1 149 Pfam PF04314 Copper chaperone PCu(A)C 26 132 2.9E-37 T 11-10-2018 IPR007410 Copper chaperone PCuAC VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 ProSitePatterns PS01229 Hypothetical cof family signature 2. 223 245 - T 11-10-2018 VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 SUPERFAMILY SSF56784 12 275 4.27E-69 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 Pfam PF08282 haloacid dehalogenase-like hydrolase 14 271 7.8E-66 T 11-10-2018 VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 ProSitePatterns PS01228 Hypothetical cof family signature 1. 13 24 - T 11-10-2018 VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 Gene3D G3DSA:3.40.50.1000 14 267 2.8E-74 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 13 242 4.8E-32 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 13 271 4.4E-60 T 11-10-2018 IPR000150 Cof family GO:0016787 VV93_v1c00850 6e3f83e1724a6f733b943f6874ce8be8 276 Gene3D G3DSA:3.30.1240.10 91 198 2.8E-74 T 11-10-2018 VV93_v1c27000 4391450833a5ace7cfcf3748ae7039fb 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 64 1.9E-25 T 11-10-2018 IPR014318 Phage shock protein, PspG VV93_v1c27000 4391450833a5ace7cfcf3748ae7039fb 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 1.8E-24 T 11-10-2018 IPR014318 Phage shock protein, PspG VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 313 4.8E-106 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 Pfam PF01479 S4 domain 18 65 1.1E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 SUPERFAMILY SSF55120 78 315 4.93E-80 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 Gene3D G3DSA:3.10.290.10 2 76 6.1E-24 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 Pfam PF00849 RNA pseudouridylate synthase 92 241 1.2E-29 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 SUPERFAMILY SSF55174 17 67 1.06E-10 T 11-10-2018 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 Gene3D G3DSA:3.30.2350.10 85 316 5.5E-72 T 11-10-2018 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c06490 295edeca0877c735a14a7d238ba77ebd 325 SMART SM00363 18 83 1.3E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 Gene3D G3DSA:2.60.40.10 357 473 7.2E-47 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 Pfam PF13746 4Fe-4S dicluster domain 222 326 1.2E-41 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 358 470 1.6E-29 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 Pfam PF12801 4Fe-4S binding domain 97 136 9.6E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 274 285 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 SUPERFAMILY SSF54862 107 352 1.0E-32 T 11-10-2018 VV93_v1c29560 5bc83f6b8a9649d0566f55310e15e1b8 473 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 43 471 1.5E-172 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 16 171 7.1E-46 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 192 329 9.0E-52 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 SUPERFAMILY SSF51735 15 190 3.38E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 SUPERFAMILY SSF48179 191 343 6.89E-56 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 18 35 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 68 95 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 250 267 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 185 209 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 144 164 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 210 234 8.0E-44 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 200 221 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 Gene3D G3DSA:3.40.50.720 4 199 2.4E-51 T 11-10-2018 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 PIRSF PIRSF000114 9 344 2.5E-94 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 14 334 37.003 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 VV93_v1c28130 7f9e4f0b1475144657a1c6c9ef550e53 345 Gene3D G3DSA:1.10.1040.10 201 345 1.5E-53 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 VV93_v1c25950 aeb77c1b1ae6d14857130677d586be9d 241 Pfam PF00753 Metallo-beta-lactamase superfamily 30 218 3.2E-13 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c25950 aeb77c1b1ae6d14857130677d586be9d 241 SMART SM00849 29 218 3.8E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c25950 aeb77c1b1ae6d14857130677d586be9d 241 SUPERFAMILY SSF56281 16 239 1.18E-32 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c25950 aeb77c1b1ae6d14857130677d586be9d 241 Gene3D G3DSA:3.60.15.10 17 237 2.0E-36 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c00280 06c420d918b46a9f570e16dbbde2633e 84 Pfam PF13358 DDE superfamily endonuclease 2 75 5.9E-17 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c00280 06c420d918b46a9f570e16dbbde2633e 84 Gene3D G3DSA:3.30.420.470 1 83 8.7E-9 T 11-10-2018 VV93_v1c22170 ea8ffaabb1bcf535a676ab318303e409 47 Pfam PF09851 Short C-terminal domain 19 45 2.0E-6 T 11-10-2018 IPR018649 SHOCT domain VV93_v1c02900 65e56c36b91b9235d6ff368d246e9288 354 Gene3D G3DSA:3.90.25.10 201 334 1.0E-138 T 11-10-2018 VV93_v1c02900 65e56c36b91b9235d6ff368d246e9288 354 Gene3D G3DSA:3.40.50.720 2 325 1.0E-138 T 11-10-2018 VV93_v1c02900 65e56c36b91b9235d6ff368d246e9288 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 6.0E-99 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c02900 65e56c36b91b9235d6ff368d246e9288 354 SUPERFAMILY SSF51735 1 337 6.62E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c02900 65e56c36b91b9235d6ff368d246e9288 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 2.3E-159 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 429 5.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SMART SM00388 222 282 1.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SUPERFAMILY SSF47384 215 277 8.83E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SMART SM00387 321 431 1.4E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 7.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 7.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 7.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 Pfam PF00672 HAMP domain 169 217 1.4E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SUPERFAMILY SSF55874 285 429 2.23E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 Gene3D G3DSA:3.30.565.10 284 432 2.3E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 Gene3D G3DSA:1.10.287.130 167 277 7.0E-24 T 11-10-2018 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SMART SM00304 169 221 1.8E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 Pfam PF00512 His Kinase A (phospho-acceptor) domain 225 276 2.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c02160 988fb37484558abe023e54abe36d3da3 432 SUPERFAMILY SSF158472 171 218 2.62E-5 T 11-10-2018 VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 Gene3D G3DSA:1.10.287.950 334 663 6.5E-70 T 11-10-2018 VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 629 5.9E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 153 7.6E-7 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 SMART SM00304 334 386 2.4E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 SUPERFAMILY SSF58104 354 663 7.72E-72 T 11-10-2018 VV93_v1c20830 d794a8c51bf3a5032e5572f39aac1f1d 663 SMART SM00283 401 662 3.0E-74 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c18520 27a9e88eff792749a0374cb2a061df6c 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 96 6.4E-33 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VV93_v1c18520 27a9e88eff792749a0374cb2a061df6c 120 PIRSF PIRSF006113 1 120 2.9E-53 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VV93_v1c18520 27a9e88eff792749a0374cb2a061df6c 120 SUPERFAMILY SSF55620 2 118 5.56E-41 T 11-10-2018 VV93_v1c18520 27a9e88eff792749a0374cb2a061df6c 120 Gene3D G3DSA:3.30.479.10 1 120 8.8E-50 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 VV93_v1c18520 27a9e88eff792749a0374cb2a061df6c 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 120 1.7E-35 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 Gene3D G3DSA:3.40.50.2300 1 152 2.9E-58 T 11-10-2018 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 SUPERFAMILY SSF52788 1 148 8.11E-49 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 120 135 9.1E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 45 61 9.1E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 9.1E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 9.1E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 SMART SM00226 2 148 2.6E-40 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VV93_v1c11820 40df04ae83e3f9ac68b6d92773625437 152 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 145 3.8E-37 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 Gene3D G3DSA:3.30.1330.50 1 158 4.2E-70 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 Pfam PF02542 YgbB family 2 155 7.2E-66 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 1.1E-69 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 36.273 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c25240 5750b4747a89c077868aeff0739745d3 158 SUPERFAMILY SSF69765 1 157 2.49E-65 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 VV93_v1c13890 2ec4348a909a2a276ad1bac0290b090a 342 SUPERFAMILY SSF53187 9 329 3.55E-76 T 11-10-2018 VV93_v1c13890 2ec4348a909a2a276ad1bac0290b090a 342 PIRSF PIRSF017020 4 336 1.2E-125 T 11-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VV93_v1c13890 2ec4348a909a2a276ad1bac0290b090a 342 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 53 330 7.0E-75 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 VV93_v1c13890 2ec4348a909a2a276ad1bac0290b090a 342 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 342 135.796 T 11-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 VV93_v1c13890 2ec4348a909a2a276ad1bac0290b090a 342 Gene3D G3DSA:3.40.630.10 1 342 2.0E-122 T 11-10-2018 VV93_v1c03470 76a5f640560395c958b798b6cd70a827 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 3 200 33.821 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03470 76a5f640560395c958b798b6cd70a827 200 Gene3D G3DSA:3.40.1370.10 5 200 3.1E-69 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03470 76a5f640560395c958b798b6cd70a827 200 SUPERFAMILY SSF52166 10 199 3.53E-73 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 VV93_v1c03470 76a5f640560395c958b798b6cd70a827 200 Pfam PF00573 Ribosomal protein L4/L1 family 12 197 4.5E-65 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 VV93_v1c03470 76a5f640560395c958b798b6cd70a827 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 197 7.9E-76 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Gene3D G3DSA:3.30.450.20 74 226 1.4E-36 T 11-10-2018 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 SUPERFAMILY SSF55073 406 564 3.92E-44 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Gene3D G3DSA:3.20.20.450 573 830 5.4E-86 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Pfam PF08269 Cache domain 37 329 1.6E-88 T 11-10-2018 IPR004010 Double Cache domain 2 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Pfam PF00990 Diguanylate cyclase, GGDEF domain 401 557 4.0E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 SMART SM00052 572 818 4.4E-98 T 11-10-2018 IPR001633 EAL domain VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 398 560 5.1E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Gene3D G3DSA:3.30.70.270 386 565 3.2E-52 T 11-10-2018 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 SMART SM01049 74 167 1.7E-23 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Pfam PF00563 EAL domain 578 813 1.7E-65 T 11-10-2018 IPR001633 EAL domain VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 Gene3D G3DSA:3.30.450.20 227 334 6.4E-19 T 11-10-2018 VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 SUPERFAMILY SSF141868 577 823 1.31E-81 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c19060 c8b6ae40a8c120e81188fc2209716a6e 831 SMART SM00267 390 562 1.8E-62 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c43480 ed3c4fdcef39737f69207a735c0d4310 385 Pfam PF07690 Major Facilitator Superfamily 18 343 7.8E-38 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c43480 ed3c4fdcef39737f69207a735c0d4310 385 SUPERFAMILY SSF103473 4 370 1.44E-47 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c43480 ed3c4fdcef39737f69207a735c0d4310 385 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 368 7.8E-61 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VV93_v1c43480 ed3c4fdcef39737f69207a735c0d4310 385 Gene3D G3DSA:1.20.1720.10 7 370 8.6E-72 T 11-10-2018 VV93_v1c30470 e34b6f91cc254d04d920e763fa19d4cd 95 Gene3D G3DSA:1.10.150.20 1 87 2.5E-22 T 11-10-2018 VV93_v1c30470 e34b6f91cc254d04d920e763fa19d4cd 95 Pfam PF04994 TfoX C-terminal domain 1 80 4.8E-25 T 11-10-2018 IPR007077 TfoX, C-terminal VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 SUPERFAMILY SSF118215 30 444 2.09E-82 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 Gene3D G3DSA:1.10.3860.10 21 463 2.1E-95 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 185 207 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 372 391 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 399 419 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.5E-14 T 11-10-2018 VV93_v1c09460 c6e8e6e626b1fc7ac117ebfd9f00364e 468 Pfam PF00375 Sodium:dicarboxylate symporter family 30 444 4.1E-90 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VV93_v1c43880 339f35aad9af66024a144c71839dcbfd 342 PIRSF PIRSF005632 1 342 4.5E-194 T 11-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit VV93_v1c43880 339f35aad9af66024a144c71839dcbfd 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 3.1E-37 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 VV93_v1c43880 339f35aad9af66024a144c71839dcbfd 342 Gene3D G3DSA:3.20.20.210 1 342 4.8E-136 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c43880 339f35aad9af66024a144c71839dcbfd 342 SUPERFAMILY SSF51726 7 341 8.63E-70 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c39820 3a776d49beac6f147e4af844f7fc1aa0 265 Gene3D G3DSA:3.90.226.10 4 206 6.3E-58 T 11-10-2018 VV93_v1c39820 3a776d49beac6f147e4af844f7fc1aa0 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 VV93_v1c39820 3a776d49beac6f147e4af844f7fc1aa0 265 Gene3D G3DSA:1.10.12.10 207 264 3.0E-19 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VV93_v1c39820 3a776d49beac6f147e4af844f7fc1aa0 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 265 2.9E-59 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VV93_v1c39820 3a776d49beac6f147e4af844f7fc1aa0 265 SUPERFAMILY SSF52096 8 264 2.77E-77 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c43420 70e76056efbb29b3c6f8a553ce9d5fec 100 Pfam PF02001 Protein of unknown function DUF134 3 88 1.1E-19 T 11-10-2018 IPR002852 Uncharacterised protein family UPF0251 VV93_v1c43420 70e76056efbb29b3c6f8a553ce9d5fec 100 Gene3D G3DSA:1.10.10.10 32 83 1.9E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43420 70e76056efbb29b3c6f8a553ce9d5fec 100 Hamap MF_00674 UPF0251 protein . 2 98 25.461 T 11-10-2018 IPR002852 Uncharacterised protein family UPF0251 VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 Gene3D G3DSA:3.20.20.140 55 414 1.4E-171 T 11-10-2018 VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 SUPERFAMILY SSF51556 56 414 1.68E-85 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 Gene3D G3DSA:3.30.1490.130 283 339 1.4E-171 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 Gene3D G3DSA:2.30.40.10 2 427 1.4E-171 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 Pfam PF07969 Amidohydrolase family 45 455 7.8E-42 T 11-10-2018 IPR013108 Amidohydrolase 3 VV93_v1c40810 941600a19a300907aee5376fd269f11e 477 SUPERFAMILY SSF51338 2 468 1.14E-18 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c17250 400edb7f8ba47d6e6207b9f56df99305 258 SMART SM00954 103 211 0.0083 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 VV93_v1c17250 400edb7f8ba47d6e6207b9f56df99305 258 SUPERFAMILY SSF81301 64 221 1.8E-16 T 11-10-2018 VV93_v1c17250 400edb7f8ba47d6e6207b9f56df99305 258 Gene3D G3DSA:3.30.460.10 73 195 4.0E-6 T 11-10-2018 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 Gene3D G3DSA:1.10.10.10 124 228 1.9E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 Pfam PF00072 Response regulator receiver domain 4 113 1.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 222 3.5E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 Gene3D G3DSA:3.40.50.2300 1 121 6.7E-38 T 11-10-2018 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 222 2.8E-101 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 SMART SM00448 1 112 1.2E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 SUPERFAMILY SSF52172 1 178 5.89E-40 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43830 a1a4ba08ce3f534c015c1310f7efbb47 231 SMART SM00862 147 222 3.6E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 143 1.3E-37 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 Gene3D G3DSA:3.40.390.30 1 154 3.0E-60 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 SUPERFAMILY SSF55486 5 149 1.42E-48 T 11-10-2018 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 24.029 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 Pfam PF02130 Uncharacterized protein family UPF0054 21 142 2.5E-38 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 VV93_v1c08520 4852162f490058f4b291b0c98bb2f9a3 154 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 11-10-2018 IPR020549 Endoribonuclease YbeY, conserved site VV93_v1c20350 f8ef80bae74ffa942fa596b6122f6481 741 SUPERFAMILY SSF53659 5 740 0.0 T 11-10-2018 VV93_v1c20350 f8ef80bae74ffa942fa596b6122f6481 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 741 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VV93_v1c20350 f8ef80bae74ffa942fa596b6122f6481 741 PIRSF PIRSF009407 1 741 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VV93_v1c20350 f8ef80bae74ffa942fa596b6122f6481 741 Gene3D G3DSA:3.40.718.10 408 651 4.8E-11 T 11-10-2018 VV93_v1c20350 f8ef80bae74ffa942fa596b6122f6481 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 VV93_v1c08060 733af52926620083e2449771ebed63f5 167 PIRSF PIRSF006162 5 166 4.4E-52 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 VV93_v1c08060 733af52926620083e2449771ebed63f5 167 SUPERFAMILY SSF101307 8 160 2.49E-47 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 VV93_v1c08060 733af52926620083e2449771ebed63f5 167 Pfam PF04608 Phosphatidylglycerophosphatase A 15 159 2.5E-51 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 VV93_v1c16370 cb08b0d49c7352f3a9a0bffef9fcb6ef 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 11 77 1.0E-8 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM VV93_v1c16370 cb08b0d49c7352f3a9a0bffef9fcb6ef 82 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 12 61 3.6E-5 T 11-10-2018 VV93_v1c16370 cb08b0d49c7352f3a9a0bffef9fcb6ef 82 SUPERFAMILY SSF143120 12 68 2.35E-8 T 11-10-2018 IPR036165 YefM-like superfamily VV93_v1c30030 6a7099a13e59205084d37cce09987c09 111 Pfam PF12728 Helix-turn-helix domain 41 90 1.8E-11 T 11-10-2018 VV93_v1c30030 6a7099a13e59205084d37cce09987c09 111 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 41 87 4.3E-11 T 11-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 VV93_v1c30030 6a7099a13e59205084d37cce09987c09 111 SUPERFAMILY SSF46955 40 94 1.35E-6 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 SUPERFAMILY SSF52540 1 220 1.46E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 Pfam PF00005 ABC transporter 18 165 9.8E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 3.6E-90 T 11-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 SMART SM00382 27 214 6.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c01020 6c285cc91db329f1762b2ff5516a3668 225 Gene3D G3DSA:3.40.50.300 1 223 3.3E-62 T 11-10-2018 VV93_v1c18160 a9eba4e13687819bc1e2d6bbb0c18cb0 127 SUPERFAMILY SSF54593 5 124 6.05E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c18160 a9eba4e13687819bc1e2d6bbb0c18cb0 127 Gene3D G3DSA:3.10.180.10 8 126 1.8E-37 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c18160 a9eba4e13687819bc1e2d6bbb0c18cb0 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 123 1.7E-6 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 SUPERFAMILY SSF56176 201 282 2.64E-23 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 Pfam PF00571 CBS domain 67 124 2.3E-7 T 11-10-2018 IPR000644 CBS domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 Pfam PF00571 CBS domain 137 187 2.5E-6 T 11-10-2018 IPR000644 CBS domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 Gene3D G3DSA:3.10.580.10 49 195 1.4E-54 T 11-10-2018 VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 SUPERFAMILY SSF54631 57 199 1.95E-33 T 11-10-2018 VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 SMART SM01091 203 281 3.6E-30 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 Gene3D G3DSA:3.30.465.10 196 288 1.9E-31 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 Pfam PF03471 Transporter associated domain 204 279 8.5E-22 T 11-10-2018 IPR005170 Transporter-associated domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 SMART SM00116 76 125 0.19 T 11-10-2018 IPR000644 CBS domain VV93_v1c08510 ceec95278a26740c99a9343278d00dbf 291 SMART SM00116 139 187 0.025 T 11-10-2018 IPR000644 CBS domain VV93_v1c02870 d8afdaf6d8d33a70829705ff4e1a0c00 129 Gene3D G3DSA:1.10.3830.10 9 128 2.9E-40 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c02870 d8afdaf6d8d33a70829705ff4e1a0c00 129 Pfam PF01219 Prokaryotic diacylglycerol kinase 22 122 6.1E-35 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c02870 d8afdaf6d8d33a70829705ff4e1a0c00 129 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 76 87 - T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 VV93_v1c19080 8891a4ffdd8b590b65996e9abecaec25 587 Pfam PF00916 Sulfate permease family 24 383 4.5E-81 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VV93_v1c19080 8891a4ffdd8b590b65996e9abecaec25 587 Gene3D G3DSA:3.30.750.24 436 554 7.2E-20 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c19080 8891a4ffdd8b590b65996e9abecaec25 587 Pfam PF01740 STAS domain 447 539 1.6E-15 T 11-10-2018 IPR002645 STAS domain VV93_v1c19080 8891a4ffdd8b590b65996e9abecaec25 587 SUPERFAMILY SSF52091 446 536 3.73E-13 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 SUPERFAMILY SSF63848 113 218 7.45E-31 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 7.5E-29 T 11-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 218 6.1E-77 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 Gene3D G3DSA:3.30.750.120 1 112 5.6E-31 T 11-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 115 215 1.4E-31 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 4 219 27.859 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 VV93_v1c09800 d32fe54d846875066d150c7983e00723 220 Gene3D G3DSA:2.160.20.70 113 220 2.3E-31 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 Pfam PF00072 Response regulator receiver domain 8 118 8.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 SMART SM00421 140 197 6.8E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 1.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 1.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 1.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 SMART SM00448 5 118 1.7E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 Gene3D G3DSA:3.40.50.2300 2 138 2.2E-27 T 11-10-2018 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 196 2.8E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 SUPERFAMILY SSF46894 127 196 1.84E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 Gene3D G3DSA:1.10.10.10 139 198 4.0E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c33110 acdc3f75e56a43c240b600dc584fbe50 199 SUPERFAMILY SSF52172 4 129 3.27E-27 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43590 2941de5217d3b59259cd1a9d1956f75c 434 Pfam PF00561 alpha/beta hydrolase fold 51 224 7.5E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c43590 2941de5217d3b59259cd1a9d1956f75c 434 SUPERFAMILY SSF53474 33 421 9.64E-35 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c43590 2941de5217d3b59259cd1a9d1956f75c 434 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 53 61 2.5E-8 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 VV93_v1c43590 2941de5217d3b59259cd1a9d1956f75c 434 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 83 94 2.5E-8 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 VV93_v1c43590 2941de5217d3b59259cd1a9d1956f75c 434 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 140 154 2.5E-8 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 Gene3D G3DSA:2.30.22.10 142 198 2.1E-26 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 Pfam PF01025 GrpE 36 198 2.8E-56 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 ProSitePatterns PS01071 grpE protein signature. 153 196 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 PRINTS PR00773 GrpE protein signature 177 196 1.1E-28 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 PRINTS PR00773 GrpE protein signature 95 110 1.1E-28 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 PRINTS PR00773 GrpE protein signature 67 83 1.1E-28 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 PRINTS PR00773 GrpE protein signature 150 165 1.1E-28 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 SUPERFAMILY SSF51064 143 198 4.32E-20 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 Hamap MF_01151 Protein GrpE [grpE]. 2 198 22.591 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 SUPERFAMILY SSF58014 44 142 6.28E-30 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VV93_v1c07650 ab031b216163106bc4d02845b18cb827 198 Gene3D G3DSA:3.90.20.20 35 141 7.2E-33 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Gene3D G3DSA:3.40.50.300 203 438 1.8E-74 T 11-10-2018 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 15 702 3.5E-212 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Pfam PF13538 UvrD-like helicase C-terminal domain 631 677 1.0E-14 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 23 700 49.688 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Pfam PF13604 AAA domain 238 398 1.5E-31 T 11-10-2018 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 SUPERFAMILY SSF52540 363 701 7.52E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Gene3D G3DSA:3.40.50.300 448 569 4.3E-23 T 11-10-2018 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Gene3D G3DSA:3.40.50.300 570 691 5.2E-27 T 11-10-2018 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 Gene3D G3DSA:1.10.10.1020 9 125 8.8E-23 T 11-10-2018 VV93_v1c23280 9cc627b54593a9513a510fba1ec7125a 704 SUPERFAMILY SSF52540 16 443 3.75E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c32840 7d8550328b76cedf18461e84e515badb 471 Pfam PF03929 PepSY-associated TM region 23 408 1.2E-64 T 11-10-2018 IPR005625 PepSY-associated TM protein VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 489 671 5.4E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 SMART SM00283 443 704 6.6E-64 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Gene3D G3DSA:1.10.287.950 374 705 1.0E-69 T 11-10-2018 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Gene3D G3DSA:3.30.450.20 73 233 1.9E-27 T 11-10-2018 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 SUPERFAMILY SSF58104 396 705 6.54E-73 T 11-10-2018 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 SMART SM00304 374 428 4.4E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Pfam PF02743 Cache domain 50 324 2.7E-14 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Pfam PF00672 HAMP domain 376 425 1.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c20430 306aee2a6d08a8a5b0ad024239a56433 705 Gene3D G3DSA:3.30.450.20 64 331 1.9E-27 T 11-10-2018 VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 Gene3D G3DSA:2.40.280.10 8 136 1.3E-43 T 11-10-2018 IPR023620 Small protein B VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 5.0E-61 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 Pfam PF01668 SmpB protein 15 157 8.1E-56 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 Hamap MF_00023 SsrA-binding protein [smpB]. 1 161 69.318 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 SUPERFAMILY SSF74982 9 139 7.85E-48 T 11-10-2018 IPR023620 Small protein B VV93_v1c07590 4c2f73f57841a8715daa3db3336fc62b 161 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 157 1.1E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 VV93_v1c01320 26153a50fda7fbae5203448f89085482 68 Pfam PF01381 Helix-turn-helix 12 66 3.1E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c01320 26153a50fda7fbae5203448f89085482 68 SUPERFAMILY SSF47413 3 67 6.19E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c01320 26153a50fda7fbae5203448f89085482 68 SMART SM00530 11 66 4.9E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c01320 26153a50fda7fbae5203448f89085482 68 Gene3D G3DSA:1.10.260.40 1 68 2.8E-21 T 11-10-2018 VV93_v1c34880 26153a50fda7fbae5203448f89085482 68 Pfam PF01381 Helix-turn-helix 12 66 3.1E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c34880 26153a50fda7fbae5203448f89085482 68 SUPERFAMILY SSF47413 3 67 6.19E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c34880 26153a50fda7fbae5203448f89085482 68 SMART SM00530 11 66 4.9E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c34880 26153a50fda7fbae5203448f89085482 68 Gene3D G3DSA:1.10.260.40 1 68 2.8E-21 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 421 706 1.6E-95 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 612 630 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 319 391 7.0E-15 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 172 294 5.5E-22 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Gene3D G3DSA:3.50.30.10 173 399 3.0E-56 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Gene3D G3DSA:1.10.274.10 190 314 3.0E-56 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 SMART SM00065 17 163 1.6E-22 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 SUPERFAMILY SSF47831 203 311 2.62E-26 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Gene3D G3DSA:3.30.450.40 1 161 6.2E-44 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 SUPERFAMILY SSF52009 293 412 7.72E-26 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Pfam PF01590 GAF domain 17 153 1.1E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 172 730 4.9E-134 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 SUPERFAMILY SSF55781 2 158 1.79E-33 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 Gene3D G3DSA:3.20.20.60 400 739 8.0E-105 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 612 627 7.1E-23 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 665 677 7.1E-23 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 7.1E-23 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 629 644 7.1E-23 T 11-10-2018 VV93_v1c06160 7e3623b0e30f25cdc79c93b761ea947b 748 SUPERFAMILY SSF51621 422 713 1.2E-97 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 PIRSF PIRSF004808 1 242 1.2E-73 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 SUPERFAMILY SSF75217 5 175 2.88E-37 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 239 7.7E-83 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 Gene3D G3DSA:3.40.1280.10 1 166 2.5E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 Pfam PF00588 SpoU rRNA Methylase family 5 153 7.7E-34 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c06990 fd9842cf51db04c61394bf00e3efc61b 242 Gene3D G3DSA:1.10.8.590 173 242 1.5E-28 T 11-10-2018 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 4 219 7.8E-100 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 227 148.817 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 Pfam PF02976 DNA mismatch repair enzyme MutH 53 151 2.1E-33 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 SMART SM00927 53 151 3.1E-64 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 SUPERFAMILY SSF52980 2 220 4.5E-83 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c06140 941704b08753e8105f09cba010a07b9a 227 Gene3D G3DSA:3.40.600.10 2 221 1.5E-54 T 11-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 125 143 1.9E-38 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 75 95 1.9E-38 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 15 32 1.9E-38 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 99 121 1.9E-38 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 Pfam PF02556 Preprotein translocase subunit SecB 7 146 1.3E-54 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 Gene3D G3DSA:3.10.420.10 4 155 3.0E-57 T 11-10-2018 IPR035958 SecB-like superfamily VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 Hamap MF_00821 Protein-export protein SecB [secB]. 1 147 31.672 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 8 147 2.6E-58 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 VV93_v1c28120 02e9025bcbcda04d8fac48d21256ca1d 155 SUPERFAMILY SSF54611 4 143 2.18E-51 T 11-10-2018 IPR035958 SecB-like superfamily VV93_v1c39530 16736c6f3698109acb61db94b6a58e72 193 Gene3D G3DSA:3.40.50.150 1 174 1.5E-27 T 11-10-2018 VV93_v1c39530 16736c6f3698109acb61db94b6a58e72 193 SUPERFAMILY SSF53335 5 179 4.14E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c39530 16736c6f3698109acb61db94b6a58e72 193 Pfam PF08242 Methyltransferase domain 41 135 3.6E-13 T 11-10-2018 IPR013217 Methyltransferase type 12 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 SMART SM00448 4 114 1.6E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 Gene3D G3DSA:3.40.50.2300 1 123 4.0E-33 T 11-10-2018 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 Gene3D G3DSA:1.10.10.10 124 235 4.9E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 SUPERFAMILY SSF46894 137 233 1.81E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 232 4.1E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 SMART SM00862 156 232 1.4E-13 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 Pfam PF00072 Response regulator receiver domain 6 113 1.0E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c05850 fd83e0b7bccd49e2d46e1e3a6dc8c204 238 SUPERFAMILY SSF52172 2 123 1.29E-35 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Gene3D G3DSA:1.10.540.10 1 117 3.3E-31 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 SUPERFAMILY SSF56645 1 240 1.03E-77 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 PIRSF PIRSF016578 3 192 8.0E-13 T 11-10-2018 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 PIRSF PIRSF016578 211 382 3.6E-16 T 11-10-2018 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 4.4E-26 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 SUPERFAMILY SSF47203 225 379 4.51E-61 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 3.8E-25 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 2.2E-51 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Gene3D G3DSA:2.40.110.10 121 231 1.8E-42 T 11-10-2018 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 Gene3D G3DSA:1.20.140.10 232 383 3.0E-56 T 11-10-2018 VV93_v1c39830 6444cebd093bf279d5e56d5d275f8e3e 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VV93_v1c34070 4496759ba3a36b8f9e6e8d2558138174 279 Gene3D G3DSA:3.40.50.1980 140 279 1.4E-43 T 11-10-2018 VV93_v1c34070 4496759ba3a36b8f9e6e8d2558138174 279 Gene3D G3DSA:3.40.50.1980 19 139 1.3E-33 T 11-10-2018 VV93_v1c34070 4496759ba3a36b8f9e6e8d2558138174 279 Pfam PF01497 Periplasmic binding protein 25 253 2.5E-33 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain VV93_v1c34070 4496759ba3a36b8f9e6e8d2558138174 279 SUPERFAMILY SSF53807 23 277 4.32E-47 T 11-10-2018 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 549 5.0E-204 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 1.9E-35 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 1.9E-35 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 1.9E-35 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 1.9E-35 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 49 61 1.9E-35 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 686 25.784 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 SUPERFAMILY SSF109604 351 490 2.35E-12 T 11-10-2018 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 687 4.3E-296 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 VV93_v1c00090 13b8d047e5ce092d0e81556032c924d9 688 Pfam PF05746 DALR anticodon binding domain 580 677 2.3E-9 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 VV93_v1c17360 0cb5b8937ed493c6c44dc1f8b830485c 272 SUPERFAMILY SSF89392 111 213 2.24E-5 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VV93_v1c17360 0cb5b8937ed493c6c44dc1f8b830485c 272 Gene3D G3DSA:2.50.20.10 34 270 8.0E-93 T 11-10-2018 VV93_v1c17360 0cb5b8937ed493c6c44dc1f8b830485c 272 Pfam PF17131 Outer membrane lipoprotein-sorting protein 87 270 1.1E-64 T 11-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 Gene3D G3DSA:2.70.50.50 24 201 2.6E-81 T 11-10-2018 VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 Gene3D G3DSA:3.30.70.2150 208 316 4.5E-38 T 11-10-2018 VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 Hamap MF_01905 GlcNAc-binding protein A [gbpA]. 3 485 61.187 T 11-10-2018 IPR020879 N-acetylglucosamine-binding protein A GO:0008061 VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 37 198 2.6E-33 T 11-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 Gene3D G3DSA:2.60.40.2550 317 414 1.6E-35 T 11-10-2018 VV93_v1c35550 8b8de7ff31356e769f522f14c10e01c3 485 SUPERFAMILY SSF81296 24 202 3.08E-56 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c13910 7cffd72ccab052ce46a739e31a761cd9 254 Gene3D G3DSA:3.40.50.300 9 254 2.1E-53 T 11-10-2018 VV93_v1c13910 7cffd72ccab052ce46a739e31a761cd9 254 SMART SM00382 21 216 1.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13910 7cffd72ccab052ce46a739e31a761cd9 254 Pfam PF00005 ABC transporter 14 167 3.0E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c13910 7cffd72ccab052ce46a739e31a761cd9 254 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 1 254 42.821 T 11-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 VV93_v1c13910 7cffd72ccab052ce46a739e31a761cd9 254 SUPERFAMILY SSF52540 15 228 6.71E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34030 0ac8406f96f6a101d78096db0e8cf1a6 99 Gene3D G3DSA:3.30.70.860 1 99 6.0E-40 T 11-10-2018 IPR035571 UPF0234-like, C-terminal VV93_v1c34030 0ac8406f96f6a101d78096db0e8cf1a6 99 Pfam PF04175 Protein of unknown function (DUF406) 7 95 7.5E-30 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 VV93_v1c23710 71cd352d957b615305551ca1286ef9c3 495 SUPERFAMILY SSF52540 126 460 2.71E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23710 71cd352d957b615305551ca1286ef9c3 495 Pfam PF00437 Type II/IV secretion system protein 144 421 7.6E-83 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c23710 71cd352d957b615305551ca1286ef9c3 495 Gene3D G3DSA:3.30.450.380 23 239 7.3E-43 T 11-10-2018 VV93_v1c23710 71cd352d957b615305551ca1286ef9c3 495 Gene3D G3DSA:3.40.50.300 240 459 4.5E-70 T 11-10-2018 VV93_v1c20040 c84df4e52055bf70cccced421e443f4d 330 Pfam PF14397 Sugar-transfer associated ATP-grasp 25 298 7.3E-115 T 11-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 VV93_v1c20040 c84df4e52055bf70cccced421e443f4d 330 SUPERFAMILY SSF56059 46 283 3.87E-20 T 11-10-2018 VV93_v1c20040 c84df4e52055bf70cccced421e443f4d 330 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 8 323 1.0E-169 T 11-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 SUPERFAMILY SSF64288 95 231 4.71E-39 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 Gene3D G3DSA:3.40.1410.10 89 224 4.4E-33 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 4 233 1.0E-90 T 11-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 Gene3D G3DSA:1.10.10.10 4 72 1.7E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 SMART SM00866 91 228 5.3E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 SMART SM00345 9 68 1.3E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 1.5E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 SUPERFAMILY SSF46785 3 72 5.09E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 Pfam PF07702 UTRA domain 92 228 4.7E-35 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.1E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c17080 0981f48f9bd49837146bdcf6aead8d8c 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.1E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Pfam PF04408 Helicase associated domain (HA2) 373 438 5.7E-5 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 SUPERFAMILY SSF52540 18 326 6.46E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Gene3D G3DSA:3.40.50.300 168 331 1.2E-43 T 11-10-2018 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 SMART SM00487 1 174 1.8E-13 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Gene3D G3DSA:1.20.120.1080 356 448 1.1E-6 T 11-10-2018 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Gene3D G3DSA:3.40.50.300 2 163 4.6E-42 T 11-10-2018 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Pfam PF00270 DEAD/DEAH box helicase 13 153 1.1E-8 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 Pfam PF00271 Helicase conserved C-terminal domain 196 314 2.0E-14 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 SMART SM00847 372 460 0.0079 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 VV93_v1c13740 d3e3d79824f8bdf17f46182d8669b6ce 781 SMART SM00490 219 315 2.7E-14 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 TIGRFAM TIGR01707 gspI: type II secretion system protein I 9 106 4.5E-36 T 11-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 Gene3D G3DSA:3.30.1300.30 33 120 3.3E-38 T 11-10-2018 VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 2.3E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 SUPERFAMILY SSF54523 40 118 2.98E-23 T 11-10-2018 VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 Pfam PF02501 Type II secretion system (T2SS), protein I 43 118 7.1E-22 T 11-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 VV93_v1c02010 22b1f3ea2b54c416d69d081ab509a51b 120 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 29 4.3E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c43450 07f68b5785c52b45e5963182440d146e 115 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 22 111 3.0E-34 T 11-10-2018 IPR009707 Membrane protein GlpM/YdgC VV93_v1c43450 07f68b5785c52b45e5963182440d146e 115 Pfam PF06942 GlpM protein 6 111 8.8E-51 T 11-10-2018 IPR009707 Membrane protein GlpM/YdgC VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 351 3.0E-71 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Pfam PF13533 Biotin-lipoyl like 68 112 1.2E-12 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Gene3D G3DSA:2.40.50.100 65 197 8.2E-74 T 11-10-2018 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Gene3D G3DSA:1.10.287.470 99 158 8.2E-74 T 11-10-2018 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Gene3D G3DSA:2.40.420.20 279 348 8.2E-74 T 11-10-2018 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Gene3D G3DSA:2.40.30.170 55 278 8.2E-74 T 11-10-2018 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 Pfam PF13437 HlyD family secretion protein 163 265 1.4E-13 T 11-10-2018 VV93_v1c36970 1cc839a423df6b4585ff0e8d71c4d2cd 357 SUPERFAMILY SSF111369 57 274 3.4E-33 T 11-10-2018 VV93_v1c26010 91efb21cba71b4c19ef77eaaa7ff986b 135 Gene3D G3DSA:3.10.180.10 8 135 3.3E-39 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c26010 91efb21cba71b4c19ef77eaaa7ff986b 135 SUPERFAMILY SSF54593 1 131 5.19E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c26010 91efb21cba71b4c19ef77eaaa7ff986b 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 129 5.5E-10 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c22010 2642694928fd7eada0103b681dc1c2fd 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 113 4.2E-32 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR VV93_v1c22010 2642694928fd7eada0103b681dc1c2fd 115 Gene3D G3DSA:3.40.30.10 2 115 3.0E-43 T 11-10-2018 VV93_v1c22010 2642694928fd7eada0103b681dc1c2fd 115 SUPERFAMILY SSF52833 2 114 2.11E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c22010 2642694928fd7eada0103b681dc1c2fd 115 Pfam PF03960 ArsC family 6 113 3.2E-20 T 11-10-2018 IPR006660 Arsenate reductase-like VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 Pfam PF00072 Response regulator receiver domain 187 305 6.7E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 Gene3D G3DSA:2.40.50.180 36 152 2.3E-29 T 11-10-2018 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 SUPERFAMILY SSF50341 4 157 1.83E-32 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 SUPERFAMILY SSF52172 185 310 3.84E-28 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 SMART SM00448 185 310 4.7E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 SMART SM00260 6 152 1.6E-24 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 Gene3D G3DSA:3.40.50.2300 171 314 1.4E-28 T 11-10-2018 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 Pfam PF01584 CheW-like domain 27 154 1.6E-30 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 Gene3D G3DSA:2.30.30.40 28 146 2.3E-29 T 11-10-2018 VV93_v1c35780 b0806799c59c7cfa2b7a0e5a2cc721cd 319 PIRSF PIRSF002867 1 317 7.0E-100 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 Gene3D G3DSA:3.40.50.10860 8 258 7.6E-84 T 11-10-2018 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 120 195 7.0E-14 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 SUPERFAMILY SSF53223 6 105 8.63E-32 T 11-10-2018 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 8 274 1.0E-87 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 92 2.9E-24 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 5 273 32.573 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 Gene3D G3DSA:3.40.50.720 119 239 7.6E-84 T 11-10-2018 VV93_v1c29380 0729e051fef7750ad925a6e78cbaac71 277 SUPERFAMILY SSF51735 106 273 7.08E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 SUPERFAMILY SSF46785 5 70 1.18E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 SMART SM00420 6 58 5.8E-10 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 SMART SM01134 73 233 2.0E-68 T 11-10-2018 VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 SUPERFAMILY SSF100950 74 234 9.21E-34 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.3E-51 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c44210 51eb1ca0cc56e06e694a4096536e6b11 262 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 8.4E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c08250 d809bb2d0c0dc0182038c58a4a7a092e 181 Hamap MF_01104 Protein Syd [syd]. 3 181 37.156 T 11-10-2018 IPR009948 Syd GO:0009898 VV93_v1c08250 d809bb2d0c0dc0182038c58a4a7a092e 181 Gene3D G3DSA:3.40.1580.20 1 181 3.7E-67 T 11-10-2018 IPR038228 Syd superfamily VV93_v1c08250 d809bb2d0c0dc0182038c58a4a7a092e 181 Pfam PF07348 Syd protein (SUKH-2) 8 179 4.4E-68 T 11-10-2018 IPR009948 Syd GO:0009898 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.0E-106 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 3.8E-53 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 Gene3D G3DSA:3.40.50.790 68 159 9.9E-82 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 Gene3D G3DSA:3.30.190.20 21 225 9.9E-82 T 11-10-2018 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 PIRSF PIRSF002155 1 227 1.4E-79 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.384 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 VV93_v1c28790 1bd850a174b175b398a6292e3a004ade 233 SUPERFAMILY SSF56808 6 225 3.01E-83 T 11-10-2018 IPR023674 Ribosomal protein L1-like VV93_v1c20650 46ac3b928ad649a04f5744eeaaeb87fa 335 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 323 7.6E-111 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VV93_v1c20650 46ac3b928ad649a04f5744eeaaeb87fa 335 SUPERFAMILY SSF52540 50 198 6.77E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20650 46ac3b928ad649a04f5744eeaaeb87fa 335 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 328 40.28 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VV93_v1c20650 46ac3b928ad649a04f5744eeaaeb87fa 335 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 23 327 2.3E-91 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 VV93_v1c26050 f3d04e9b353e513734e8301bbc398c5f 102 Gene3D G3DSA:1.20.58.280 1 101 3.7E-34 T 11-10-2018 VV93_v1c26050 f3d04e9b353e513734e8301bbc398c5f 102 SUPERFAMILY SSF46973 2 98 2.09E-33 T 11-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 VV93_v1c26050 f3d04e9b353e513734e8301bbc398c5f 102 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 6 98 3.6E-33 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 VV93_v1c26050 f3d04e9b353e513734e8301bbc398c5f 102 PIRSF PIRSF000699 1 102 8.5E-37 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 VV93_v1c19790 d34d8a794ec8586f2fda45a771d571d5 185 Pfam PF06693 Protein of unknown function (DUF1190) 38 181 5.0E-24 T 11-10-2018 IPR009576 Biofilm formation YgiB VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 Gene3D G3DSA:3.40.50.1980 31 120 1.7E-24 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 238 255 5.6E-14 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 54 72 5.6E-14 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 85 100 5.6E-14 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 275 288 5.6E-14 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 210 228 5.6E-14 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 SUPERFAMILY SSF53807 32 293 4.32E-58 T 11-10-2018 VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 Pfam PF01497 Periplasmic binding protein 37 273 1.9E-29 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain VV93_v1c44070 e40aa65ce32b0f4eb0b3276ada9f423b 298 Gene3D G3DSA:3.40.50.1980 123 296 6.4E-56 T 11-10-2018 VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Pfam PF12245 Bacterial Ig-like domain (group 3) 837 864 2.2 T 11-10-2018 IPR022038 Bacterial Ig-like domain VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Pfam PF12245 Bacterial Ig-like domain (group 3) 507 522 2.7 T 11-10-2018 IPR022038 Bacterial Ig-like domain VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 868 968 2.9E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 1511 1607 2.6E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 969 1070 1.8E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 770 866 1.8E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 232 326 2.0E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 1308 1404 2.1E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 430 528 1.3E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 Gene3D G3DSA:2.60.40.10 1407 1508 8.8E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 4023 4113 6.5E-13 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass VV93_v1c33150 697d94cff08380bd84c66a59caefc70c 4115 TIGRFAM TIGR03660 T1SS_rpt_143: T1SS-143 repeat domain 2334 2459 7.9E-25 T 11-10-2018 IPR019959 T1SS-143 repeat-containing domain VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 41 6.8E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 Gene3D G3DSA:1.10.10.10 1 52 1.0E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 SUPERFAMILY SSF46785 1 45 2.53E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 Gene3D G3DSA:3.40.640.10 109 326 9.0E-74 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 Pfam PF00155 Aminotransferase class I and II 98 420 4.9E-32 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 Gene3D G3DSA:3.90.1150.10 87 430 9.0E-74 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c31790 a0318c87d5aeb5587a6a97c272fe10ce 435 SUPERFAMILY SSF53383 73 431 6.69E-77 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 Gene3D G3DSA:1.10.10.10 6 95 5.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 SUPERFAMILY SSF46785 7 84 3.08E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 30 48 - T 11-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.8E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 1.8E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.8E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.8E-20 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 SMART SM00418 5 84 1.9E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c42770 2d44a320c2bafd4740b3d6c3c6dcee3e 115 Pfam PF01022 Bacterial regulatory protein, arsR family 14 58 4.0E-15 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.814 T 11-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 Pfam PF13181 Tetratricopeptide repeat 216 246 0.04 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 Pfam PF13181 Tetratricopeptide repeat 180 213 0.011 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SUPERFAMILY SSF48452 31 96 2.77E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SUPERFAMILY SSF48452 109 279 1.18E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SMART SM00028 180 213 0.019 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SMART SM00028 69 102 81.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SMART SM00028 214 247 0.014 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 SMART SM00028 35 68 400.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 Pfam PF13176 Tetratricopeptide repeat 71 94 0.02 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c12190 38d4d23c66e38e274972d4bf75633a8f 389 Gene3D G3DSA:1.25.40.10 22 356 1.2E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c39060 70057c9cf928ac41150c28d051347a90 447 Pfam PF01523 Putative modulator of DNA gyrase 24 311 6.4E-43 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VV93_v1c39060 70057c9cf928ac41150c28d051347a90 447 SUPERFAMILY SSF111283 7 445 1.7E-94 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VV93_v1c39060 70057c9cf928ac41150c28d051347a90 447 Gene3D G3DSA:3.30.2290.10 1 214 4.0E-34 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VV93_v1c27450 73a7ad11873721809ff42f068a678bba 305 PIRSF PIRSF005355 1 303 1.2E-82 T 11-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 VV93_v1c27450 73a7ad11873721809ff42f068a678bba 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 13 295 1.7E-97 T 11-10-2018 VV93_v1c27450 73a7ad11873721809ff42f068a678bba 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 4 298 20.585 T 11-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 VV93_v1c27450 73a7ad11873721809ff42f068a678bba 305 Pfam PF01040 UbiA prenyltransferase family 21 275 4.8E-38 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VV93_v1c14100 0c65795414da70ff26a1dd89abfb2616 221 Pfam PF10881 Protein of unknown function (DUF2726) 38 160 1.5E-37 T 11-10-2018 IPR024402 Domain of unknown function DUF2726 VV93_v1c14100 0c65795414da70ff26a1dd89abfb2616 221 PIRSF PIRSF028063 1 221 5.2E-144 T 11-10-2018 IPR014538 Uncharacterised conserved protein, topoisomerase zinc finger VV93_v1c02990 c7b0898de4c143e14ef7505c9330625a 396 Pfam PF02719 Polysaccharide biosynthesis protein 36 278 3.2E-45 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VV93_v1c02990 c7b0898de4c143e14ef7505c9330625a 396 Gene3D G3DSA:3.90.25.40 201 311 1.5E-160 T 11-10-2018 VV93_v1c02990 c7b0898de4c143e14ef7505c9330625a 396 SUPERFAMILY SSF51735 34 278 7.3E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c02990 c7b0898de4c143e14ef7505c9330625a 396 Gene3D G3DSA:3.40.50.720 9 370 1.5E-160 T 11-10-2018 VV93_v1c02910 c94963a668b27e60dff7612ef653ebca 294 Gene3D G3DSA:3.90.550.10 1 294 1.9E-84 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c02910 c94963a668b27e60dff7612ef653ebca 294 Pfam PF00483 Nucleotidyl transferase 2 240 1.2E-72 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VV93_v1c02910 c94963a668b27e60dff7612ef653ebca 294 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 289 4.8E-151 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 VV93_v1c02910 c94963a668b27e60dff7612ef653ebca 294 SUPERFAMILY SSF53448 1 289 2.17E-88 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 Pfam PF00034 Cytochrome c 117 201 1.2E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 Pfam PF00034 Cytochrome c 25 103 1.4E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 SUPERFAMILY SSF46626 114 203 7.24E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 Gene3D G3DSA:1.10.760.10 19 108 6.8E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 PIRSF PIRSF000005 1 205 6.0E-65 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 Gene3D G3DSA:1.10.760.10 109 205 2.0E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c01750 8f476aae88268d81fa265780a99b5691 205 SUPERFAMILY SSF46626 16 104 1.14E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c23690 bdbb094e65bf66e64635af8d94f1887f 314 Gene3D G3DSA:1.20.81.30 157 279 1.1E-5 T 11-10-2018 VV93_v1c23690 bdbb094e65bf66e64635af8d94f1887f 314 Pfam PF00482 Type II secretion system (T2SS), protein F 174 302 5.5E-23 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c38550 17772691993984d462d7a4af32778859 67 Pfam PF11661 Protein of unknown function (DUF2986) 1 42 3.9E-20 T 11-10-2018 IPR021677 Protein of unknown function DUF2986 VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 Gene3D G3DSA:3.50.50.60 4 138 3.8E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 Pfam PF13450 NAD(P)-binding Rossmann-like domain 13 77 1.5E-10 T 11-10-2018 VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 Gene3D G3DSA:3.50.50.60 280 296 1.9E-5 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 Gene3D G3DSA:3.50.50.60 223 279 1.9E-5 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 SUPERFAMILY SSF51971 8 496 3.3E-28 T 11-10-2018 VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 PRINTS PR00419 Adrenodoxin reductase family signature 10 32 5.6E-6 T 11-10-2018 VV93_v1c33070 8f5278be4b3ec79cd08e8df5dbd646be 508 PRINTS PR00419 Adrenodoxin reductase family signature 33 46 5.6E-6 T 11-10-2018 VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 60 165 2.5E-15 T 11-10-2018 IPR016188 PurM-like, N-terminal domain VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 335 1.7E-151 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 Gene3D G3DSA:3.90.650.10 172 346 1.6E-72 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 345 47.658 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 SUPERFAMILY SSF56042 172 342 8.07E-61 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 SUPERFAMILY SSF55326 8 171 1.94E-54 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 338 1.3E-38 T 11-10-2018 IPR010918 PurM-like, C-terminal domain VV93_v1c22400 2bae8099a4323100e809d2604e5c1618 346 Gene3D G3DSA:3.30.1330.10 7 171 1.4E-70 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 620 1.8E-62 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 293 309 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 209 235 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 158 180 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 243 263 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 309 328 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 273 293 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 131 148 8.5E-71 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 54 618 2.6E-171 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c11730 501bce990fa9c5ba59c1d6e6243d1d0f 639 Pfam PF01578 Cytochrome C assembly protein 89 295 1.9E-42 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 Pfam PF00672 HAMP domain 215 263 7.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 Gene3D G3DSA:1.10.287.950 213 544 1.3E-72 T 11-10-2018 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 SMART SM00283 282 543 3.3E-81 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 507 9.1E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 SUPERFAMILY SSF58104 235 544 3.01E-75 T 11-10-2018 VV93_v1c10090 ca4fc46500f4a534ebdb3379d39fb477 544 SMART SM00304 213 267 1.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 SUPERFAMILY SSF56784 104 311 1.76E-47 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 107 277 3.4E-24 T 11-10-2018 VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 Gene3D G3DSA:1.10.150.210 115 177 1.0E-167 T 11-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 102 310 1.0E-82 T 11-10-2018 VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 Gene3D G3DSA:3.40.50.1000 3 310 1.0E-167 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 Pfam PF00702 haloacid dehalogenase-like hydrolase 107 279 1.3E-11 T 11-10-2018 VV93_v1c23950 9056e191ec2fbb1b12047fe216776220 326 Gene3D G3DSA:3.30.70.2020 8 322 1.0E-167 T 11-10-2018 VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 Pfam PF01476 LysM domain 42 85 4.4E-8 T 11-10-2018 IPR018392 LysM domain VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 SUPERFAMILY SSF54106 40 85 1.96E-7 T 11-10-2018 VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 Gene3D G3DSA:2.40.440.10 21 300 2.8E-82 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 Pfam PF03734 L,D-transpeptidase catalytic domain 98 232 2.7E-20 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 SMART SM00257 41 85 6.3E-5 T 11-10-2018 IPR018392 LysM domain VV93_v1c33440 47473639082854e89556c8c10ae885e3 305 SUPERFAMILY SSF141523 97 232 2.09E-28 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VV93_v1c37140 39868546414796035353cd9312ebbea7 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 372 2.3E-83 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c37140 39868546414796035353cd9312ebbea7 382 Gene3D G3DSA:1.20.1090.10 181 381 1.7E-37 T 11-10-2018 VV93_v1c37140 39868546414796035353cd9312ebbea7 382 SUPERFAMILY SSF56796 3 380 3.14E-99 T 11-10-2018 VV93_v1c37140 39868546414796035353cd9312ebbea7 382 Gene3D G3DSA:3.40.50.1970 1 180 3.9E-50 T 11-10-2018 VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 Gene3D G3DSA:3.90.180.10 17 325 3.1E-122 T 11-10-2018 VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 Pfam PF00107 Zinc-binding dehydrogenase 159 272 1.1E-10 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 4 326 1.8E-137 T 11-10-2018 IPR014188 Acrylyl-CoA reductase AcuI VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 SMART SM00829 13 324 4.5E-5 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 Gene3D G3DSA:3.40.50.720 126 294 3.1E-122 T 11-10-2018 VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 SUPERFAMILY SSF51735 116 289 1.14E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c00160 35068cb158c732d1d07b72b3048e89a6 326 SUPERFAMILY SSF50129 2 145 2.59E-44 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c10200 f94905207c181d85877430327cb3e74f 652 Gene3D G3DSA:3.10.620.30 268 413 2.3E-33 T 11-10-2018 VV93_v1c10200 f94905207c181d85877430327cb3e74f 652 SUPERFAMILY SSF54001 245 394 3.14E-8 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VV93_v1c10200 f94905207c181d85877430327cb3e74f 652 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 67 224 1.7E-31 T 11-10-2018 IPR024618 Domain of unknown function DUF3857 VV93_v1c39090 99ccc31b497fb25330b191589116b9dc 196 Pfam PF04011 LemA family 6 196 1.8E-65 T 11-10-2018 IPR007156 LemA VV93_v1c39090 99ccc31b497fb25330b191589116b9dc 196 Gene3D G3DSA:1.20.1440.20 15 196 1.3E-61 T 11-10-2018 IPR023353 LemA-like domain superfamily VV93_v1c39090 99ccc31b497fb25330b191589116b9dc 196 SUPERFAMILY SSF140478 25 181 3.66E-53 T 11-10-2018 IPR023353 LemA-like domain superfamily VV93_v1c05500 7bf55ab4026da7e8234f16fed8017fdc 105 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 20 103 1.6E-27 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VV93_v1c05500 7bf55ab4026da7e8234f16fed8017fdc 105 Pfam PF04999 Cell division protein FtsL 8 103 9.7E-37 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VV93_v1c05500 7bf55ab4026da7e8234f16fed8017fdc 105 Hamap MF_00910 Cell division protein FtsL [ftsL]. 19 102 16.39 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 8.7E-51 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 8.7E-51 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 8.7E-51 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 8.7E-51 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 8.7E-51 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 SUPERFAMILY SSF63411 4 162 3.85E-66 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.585 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 6.0E-84 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 PIRSF PIRSF006160 1 162 1.0E-66 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 154 2.4E-61 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c25030 a8c914624d0bb57cf95fcb836cf422f2 172 Gene3D G3DSA:3.30.1360.80 1 172 2.0E-72 T 11-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 VV93_v1c18930 5db4b1070ad87968a5eeaa12d7a81355 264 SUPERFAMILY SSF52540 2 230 6.31E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18930 5db4b1070ad87968a5eeaa12d7a81355 264 SMART SM00382 31 226 1.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c18930 5db4b1070ad87968a5eeaa12d7a81355 264 Gene3D G3DSA:3.40.50.300 1 257 5.0E-52 T 11-10-2018 VV93_v1c18930 5db4b1070ad87968a5eeaa12d7a81355 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c18930 5db4b1070ad87968a5eeaa12d7a81355 264 Pfam PF00005 ABC transporter 22 177 4.2E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 Gene3D G3DSA:3.40.30.10 98 261 4.6E-45 T 11-10-2018 VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 SUPERFAMILY SSF52833 120 260 2.25E-38 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 Pfam PF10411 Disulfide bond isomerase protein N-terminus 48 98 8.9E-13 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 Pfam PF13098 Thioredoxin-like domain 130 258 2.8E-24 T 11-10-2018 IPR012336 Thioredoxin-like fold VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 SUPERFAMILY SSF54423 44 100 1.83E-13 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 Gene3D G3DSA:3.10.450.70 37 97 3.4E-19 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 VV93_v1c06050 35dba9e8a6549abfd5e62127a46c2e15 261 ProSitePatterns PS00194 Thioredoxin family active site. 137 155 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 VV93_v1c03060 9eae5b8dfdbdeaf4c7dcba1a9174a92e 229 Gene3D G3DSA:3.90.550.10 2 229 4.0E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c03060 9eae5b8dfdbdeaf4c7dcba1a9174a92e 229 Pfam PF02348 Cytidylyltransferase 6 78 6.9E-20 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VV93_v1c03060 9eae5b8dfdbdeaf4c7dcba1a9174a92e 229 SUPERFAMILY SSF53448 1 228 6.12E-56 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 SUPERFAMILY SSF53738 305 448 5.49E-33 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 178 2.6E-38 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 321 439 1.1E-28 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 SUPERFAMILY SSF53738 26 235 3.06E-52 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 11-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Gene3D G3DSA:3.40.120.10 221 318 8.8E-44 T 11-10-2018 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 SUPERFAMILY SSF53738 209 315 5.41E-7 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 SUPERFAMILY SSF55957 433 544 2.17E-19 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 486 538 3.9E-8 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Gene3D G3DSA:3.30.310.50 444 547 2.2E-34 T 11-10-2018 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 315 2.5E-16 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Gene3D G3DSA:3.40.120.10 12 218 2.6E-73 T 11-10-2018 VV93_v1c09430 7ea3047ebc4907afec9329757d7212eb 549 Gene3D G3DSA:3.40.120.10 319 443 1.7E-35 T 11-10-2018 VV93_v1c09180 3126ba1c18763d06324863ba8e2ac167 116 SMART SM00938 6 104 1.0E-5 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 VV93_v1c09180 3126ba1c18763d06324863ba8e2ac167 116 Gene3D G3DSA:3.30.70.120 1 110 2.8E-14 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VV93_v1c09180 3126ba1c18763d06324863ba8e2ac167 116 SUPERFAMILY SSF54913 1 102 9.45E-22 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 SUPERFAMILY SSF46946 2 114 6.62E-45 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 4.0E-32 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 Gene3D G3DSA:1.10.8.50 1 71 6.1E-28 T 11-10-2018 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 PIRSF PIRSF002134 1 118 3.3E-41 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 Gene3D G3DSA:4.10.910.10 72 118 1.3E-26 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.2E-53 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03680 0f5ea1e39b6612f69a8a6d04ced4e7fe 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.048 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c22290 b3e3cfe3377c9f9f7f60972682367c1b 432 SUPERFAMILY SSF53167 8 323 2.83E-26 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c22290 b3e3cfe3377c9f9f7f60972682367c1b 432 Pfam PF01048 Phosphorylase superfamily 9 323 9.3E-12 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 Pfam PF07883 Cupin domain 146 204 1.6E-10 T 11-10-2018 IPR013096 Cupin 2, conserved barrel VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 Gene3D G3DSA:1.10.260.40 22 96 1.0E-15 T 11-10-2018 VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 SUPERFAMILY SSF51182 97 204 1.06E-24 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 Pfam PF01381 Helix-turn-helix 32 84 5.7E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 SUPERFAMILY SSF47413 26 90 2.95E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 SMART SM00530 31 86 4.2E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c36930 ad3e280afcc330d07b0ffc9591688e2f 207 Gene3D G3DSA:2.60.120.10 97 205 6.2E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 Gene3D G3DSA:1.20.1090.10 185 382 8.7E-72 T 11-10-2018 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 SUPERFAMILY SSF56796 4 380 6.67E-126 T 11-10-2018 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 374 5.4E-121 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 Gene3D G3DSA:3.40.50.1970 1 183 1.1E-52 T 11-10-2018 VV93_v1c19160 3e8233b59413dc73955cc00a233b8c48 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 3 378 1.7E-184 T 11-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 VV93_v1c13430 7db5873e8bfca15409170c0a008b16ad 223 Gene3D G3DSA:3.40.50.300 1 223 3.0E-57 T 11-10-2018 VV93_v1c13430 7db5873e8bfca15409170c0a008b16ad 223 SUPERFAMILY SSF52540 1 218 1.1E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13430 7db5873e8bfca15409170c0a008b16ad 223 Pfam PF00005 ABC transporter 21 167 1.9E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c13430 7db5873e8bfca15409170c0a008b16ad 223 SMART SM00382 30 218 4.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c13430 7db5873e8bfca15409170c0a008b16ad 223 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 SUPERFAMILY SSF52343 104 235 1.44E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 Gene3D G3DSA:2.40.30.10 1 102 4.9E-22 T 11-10-2018 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 Gene3D G3DSA:3.40.50.80 103 237 3.5E-28 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 Pfam PF00175 Oxidoreductase NAD-binding domain 112 214 1.6E-20 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 SUPERFAMILY SSF63380 2 101 6.1E-18 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 PRINTS PR00410 Phenol hydroxylase reductase family signature 46 53 2.8E-14 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 PRINTS PR00410 Phenol hydroxylase reductase family signature 95 104 2.8E-14 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 PRINTS PR00410 Phenol hydroxylase reductase family signature 30 42 2.8E-14 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 PRINTS PR00410 Phenol hydroxylase reductase family signature 111 130 2.8E-14 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c28980 c2823c8675bd9d2a4d14db9ea4da39b3 237 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 145 2.8E-14 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c04230 ed48143c9a87bf3ecd03a8452c70a2ab 267 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c04230 ed48143c9a87bf3ecd03a8452c70a2ab 267 SUPERFAMILY SSF52540 6 242 2.21E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04230 ed48143c9a87bf3ecd03a8452c70a2ab 267 SMART SM00382 31 228 6.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c04230 ed48143c9a87bf3ecd03a8452c70a2ab 267 Gene3D G3DSA:3.40.50.300 4 259 9.3E-65 T 11-10-2018 VV93_v1c04230 ed48143c9a87bf3ecd03a8452c70a2ab 267 Pfam PF00005 ABC transporter 23 170 1.4E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c24790 654c4411e1c2662337206f3d1388c88a 556 SUPERFAMILY SSF52091 439 541 4.32E-13 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c24790 654c4411e1c2662337206f3d1388c88a 556 Pfam PF01740 STAS domain 440 533 1.1E-14 T 11-10-2018 IPR002645 STAS domain VV93_v1c24790 654c4411e1c2662337206f3d1388c88a 556 Gene3D G3DSA:3.30.750.24 428 550 1.1E-16 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c24790 654c4411e1c2662337206f3d1388c88a 556 Pfam PF00916 Sulfate permease family 11 376 1.4E-84 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VV93_v1c43130 dabba0c63341029b0b7bc1ad5f4e219b 131 SUPERFAMILY SSF55021 69 129 4.27E-20 T 11-10-2018 VV93_v1c43130 dabba0c63341029b0b7bc1ad5f4e219b 131 Gene3D G3DSA:3.30.2130.10 1 131 4.4E-49 T 11-10-2018 VV93_v1c43130 dabba0c63341029b0b7bc1ad5f4e219b 131 Pfam PF13840 ACT domain 72 127 1.6E-11 T 11-10-2018 IPR027795 CASTOR, ACT domain VV93_v1c43130 dabba0c63341029b0b7bc1ad5f4e219b 131 Pfam PF10000 ACT domain 2 69 3.5E-27 T 11-10-2018 IPR018717 Domain of unknown function DUF2241 VV93_v1c43130 dabba0c63341029b0b7bc1ad5f4e219b 131 SUPERFAMILY SSF55021 2 65 1.01E-19 T 11-10-2018 VV93_v1c13540 8c1933f9be3b9b2248e80a624149b2e0 553 Gene3D G3DSA:3.90.1150.170 56 523 3.7E-110 T 11-10-2018 VV93_v1c13540 8c1933f9be3b9b2248e80a624149b2e0 553 Gene3D G3DSA:3.40.640.10 122 387 3.7E-110 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c13540 8c1933f9be3b9b2248e80a624149b2e0 553 SUPERFAMILY SSF53383 27 527 1.13E-114 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c13540 8c1933f9be3b9b2248e80a624149b2e0 553 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 65 442 6.0E-56 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VV93_v1c13540 8c1933f9be3b9b2248e80a624149b2e0 553 TIGRFAM TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase 6 527 1.5E-294 T 11-10-2018 IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 Gene3D G3DSA:3.40.640.10 58 296 1.6E-135 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 Gene3D G3DSA:3.90.1150.10 40 387 1.6E-135 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.398 T 11-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 SUPERFAMILY SSF53383 4 395 3.9E-123 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 6.0E-209 T 11-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 VV93_v1c32910 ae0f791ec7720f202d6164c0d4138d13 397 Pfam PF00155 Aminotransferase class I and II 43 387 1.1E-76 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 SUPERFAMILY SSF47413 3 60 1.3E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 SMART SM00354 4 74 1.2E-8 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 Gene3D G3DSA:3.40.50.2300 82 319 1.2E-56 T 11-10-2018 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 1.2E-10 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 Pfam PF13377 Periplasmic binding protein-like domain 172 333 2.4E-34 T 11-10-2018 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 SUPERFAMILY SSF53822 65 333 1.7E-59 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 Gene3D G3DSA:1.10.260.40 1 63 1.6E-16 T 11-10-2018 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 Gene3D G3DSA:3.40.50.2300 163 293 1.2E-56 T 11-10-2018 VV93_v1c23530 b5770498dccc13849ffb4e051714ae12 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 11-10-2018 VV93_v1c45340 5d3eff9625836723aa116edfe6472ebf 75 SUPERFAMILY SSF52096 1 68 1.99E-17 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c45340 5d3eff9625836723aa116edfe6472ebf 75 Gene3D G3DSA:3.90.226.10 1 69 7.3E-16 T 11-10-2018 VV93_v1c45340 5d3eff9625836723aa116edfe6472ebf 75 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 16 27 9.2E-7 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c45340 5d3eff9625836723aa116edfe6472ebf 75 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 38 47 9.2E-7 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 VV93_v1c14060 6606ca60ff24967290dfa4eabc27d794 339 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 82 333 1.6E-40 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 VV93_v1c14060 6606ca60ff24967290dfa4eabc27d794 339 Gene3D G3DSA:3.90.850.10 1 339 2.8E-138 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VV93_v1c14060 6606ca60ff24967290dfa4eabc27d794 339 SUPERFAMILY SSF56529 77 333 4.06E-56 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VV93_v1c15900 9dc779f1c556b56865adc52f0fd00117 352 Pfam PF01292 Prokaryotic cytochrome b561 125 306 1.3E-25 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 VV93_v1c15900 9dc779f1c556b56865adc52f0fd00117 352 Gene3D G3DSA:1.20.950.20 118 336 1.2E-64 T 11-10-2018 VV93_v1c15900 9dc779f1c556b56865adc52f0fd00117 352 SUPERFAMILY SSF81342 119 331 1.1E-45 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 VV93_v1c15900 9dc779f1c556b56865adc52f0fd00117 352 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 122 326 1.3E-82 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 VV93_v1c32060 110dc45d7f1c9fe0da228d6dddaf0aa9 404 Gene3D G3DSA:3.40.50.620 20 182 2.9E-91 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c32060 110dc45d7f1c9fe0da228d6dddaf0aa9 404 SUPERFAMILY SSF52402 18 172 1.59E-24 T 11-10-2018 VV93_v1c32060 110dc45d7f1c9fe0da228d6dddaf0aa9 404 Pfam PF00764 Arginosuccinate synthase 24 371 3.6E-55 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c32060 110dc45d7f1c9fe0da228d6dddaf0aa9 404 Gene3D G3DSA:3.90.1260.10 76 361 2.9E-91 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 VV93_v1c32060 110dc45d7f1c9fe0da228d6dddaf0aa9 404 SUPERFAMILY SSF69864 185 379 4.97E-46 T 11-10-2018 VV93_v1c35330 1e0262f1d77bc53fca4bc98a66afd390 200 Gene3D G3DSA:2.40.50.140 1 66 1.7E-8 T 11-10-2018 VV93_v1c35330 1e0262f1d77bc53fca4bc98a66afd390 200 SUPERFAMILY SSF50249 2 63 2.25E-7 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c35330 1e0262f1d77bc53fca4bc98a66afd390 200 Pfam PF06961 Protein of unknown function (DUF1294) 103 157 1.2E-15 T 11-10-2018 IPR010718 Protein of unknown function DUF1294 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 Pfam PF00463 Isocitrate lyase family 259 436 5.7E-53 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 Pfam PF00463 Isocitrate lyase family 15 257 3.7E-62 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 ProSitePatterns PS00161 Isocitrate lyase signature. 195 200 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 Gene3D G3DSA:3.20.20.60 2 419 1.2E-180 T 11-10-2018 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 SUPERFAMILY SSF51621 6 436 1.3E-152 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 11 257 4.9E-113 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 258 436 2.5E-90 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VV93_v1c06880 3bc839da7098cf3f7a86e5d97a6a4d45 437 PIRSF PIRSF001362 1 437 9.5E-224 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 VV93_v1c39270 879c4b30513396cd288cc001ecf3ec06 267 PIRSF PIRSF029288 1 265 5.9E-94 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type VV93_v1c39270 879c4b30513396cd288cc001ecf3ec06 267 SUPERFAMILY SSF144059 3 262 5.36E-85 T 11-10-2018 VV93_v1c39270 879c4b30513396cd288cc001ecf3ec06 267 Gene3D G3DSA:1.25.40.10 5 87 1.2E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c39270 879c4b30513396cd288cc001ecf3ec06 267 Pfam PF07024 ImpE protein 140 258 2.2E-34 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type VV93_v1c20620 6963a1ccfff1546b75233e6ea5b98a34 262 Gene3D G3DSA:3.30.70.270 121 262 1.1E-26 T 11-10-2018 VV93_v1c20620 6963a1ccfff1546b75233e6ea5b98a34 262 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 132 262 3.8E-20 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20620 6963a1ccfff1546b75233e6ea5b98a34 262 Pfam PF00990 Diguanylate cyclase, GGDEF domain 132 262 9.0E-21 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20620 6963a1ccfff1546b75233e6ea5b98a34 262 SUPERFAMILY SSF55073 136 262 3.3E-26 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c20620 6963a1ccfff1546b75233e6ea5b98a34 262 SMART SM00267 120 261 4.0E-19 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c44790 bbbed7eb3d7a0147b6aac10950f88ee0 293 SUPERFAMILY SSF51658 3 285 1.44E-54 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily VV93_v1c44790 bbbed7eb3d7a0147b6aac10950f88ee0 293 Gene3D G3DSA:3.20.20.150 2 287 2.6E-69 T 11-10-2018 VV93_v1c44790 bbbed7eb3d7a0147b6aac10950f88ee0 293 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 7 285 5.5E-101 T 11-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 VV93_v1c44790 bbbed7eb3d7a0147b6aac10950f88ee0 293 Pfam PF01261 Xylose isomerase-like TIM barrel 29 238 3.3E-34 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 439 2.3E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 Gene3D G3DSA:3.30.565.10 291 440 3.7E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 SUPERFAMILY SSF51206 3 133 1.7E-15 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 Gene3D G3DSA:2.60.120.10 3 136 5.1E-12 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 SUPERFAMILY SSF55874 291 438 1.83E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 2.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 2.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 2.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 2.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 SMART SM00100 2 124 7.5E-4 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 SMART SM00387 329 440 7.3E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 Gene3D G3DSA:1.10.287.130 145 289 7.8E-9 T 11-10-2018 VV93_v1c18340 f44b6543aeff36923c0e154ba0eeb169 451 Pfam PF00027 Cyclic nucleotide-binding domain 22 100 5.6E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain VV93_v1c10040 1adffe5074e7d5e620133f4e8cbc49b3 250 SUPERFAMILY SSF53901 40 160 1.18E-6 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c10040 1adffe5074e7d5e620133f4e8cbc49b3 250 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 35 248 3.4E-74 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal VV93_v1c34340 9eb1bb086c8a5c5c22035f8b4731b6f1 202 Pfam PF11140 Protein of unknown function (DUF2913) 13 192 3.3E-46 T 11-10-2018 IPR021316 Protein of unknown function DUF2913 VV93_v1c38630 e454458fbadaa217ade49f4b4d2c2e76 255 Pfam PF11932 Protein of unknown function (DUF3450) 8 247 6.4E-83 T 11-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VV93_v1c38630 e454458fbadaa217ade49f4b4d2c2e76 255 PIRSF PIRSF028069 1 255 1.2E-101 T 11-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 Pfam PF07885 Ion channel 237 324 6.9E-15 T 11-10-2018 IPR013099 Potassium channel domain VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 Pfam PF00805 Pentapeptide repeats (8 copies) 90 127 5.1E-8 T 11-10-2018 IPR001646 Pentapeptide repeat VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 SUPERFAMILY SSF81324 230 325 1.23E-16 T 11-10-2018 VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 Gene3D G3DSA:2.160.20.100 40 178 1.4E-14 T 11-10-2018 VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 Gene3D G3DSA:1.10.287.70 226 325 3.0E-15 T 11-10-2018 VV93_v1c07280 1988b1297e4fa144869e9de963bbf8ed 325 SUPERFAMILY SSF141571 55 140 4.05E-14 T 11-10-2018 VV93_v1c35540 d3efd5cd2abe9041c693be5b6ac656e2 559 Gene3D G3DSA:3.40.640.10 118 440 9.9E-61 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c35540 d3efd5cd2abe9041c693be5b6ac656e2 559 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 99 462 1.1E-31 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 VV93_v1c35540 d3efd5cd2abe9041c693be5b6ac656e2 559 SUPERFAMILY SSF53383 95 555 1.04E-71 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 Gene3D G3DSA:1.25.40.10 193 278 2.7E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 SMART SM00028 223 256 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 SMART SM00028 289 322 250.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 SMART SM00028 323 356 340.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 SMART SM00028 189 222 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 Pfam PF14559 Tetratricopeptide repeat 199 254 1.7E-5 T 11-10-2018 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 SUPERFAMILY SSF48452 189 351 2.75E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c26680 1d18c675e87af0f88106858d260318e0 377 Gene3D G3DSA:1.25.40.10 279 377 7.0E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 Hamap MF_00596 GMP reductase [guaC]. 1 345 49.752 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 Gene3D G3DSA:3.20.20.70 1 345 2.3E-118 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 SUPERFAMILY SSF51412 6 334 4.58E-100 T 11-10-2018 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 PIRSF PIRSF000235 1 348 2.6E-193 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 1.7E-182 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 336 1.9E-81 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 VV93_v1c41090 bd6feff7e7821c27ab7c6b8c2b365533 348 SMART SM01240 7 344 2.2E-138 T 11-10-2018 VV93_v1c12970 03db29d82e9b011bacd6341cc696e772 261 SMART SM00382 38 227 2.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c12970 03db29d82e9b011bacd6341cc696e772 261 Pfam PF00005 ABC transporter 30 178 3.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c12970 03db29d82e9b011bacd6341cc696e772 261 Gene3D G3DSA:3.40.50.300 1 259 2.8E-69 T 11-10-2018 VV93_v1c12970 03db29d82e9b011bacd6341cc696e772 261 SUPERFAMILY SSF52540 3 252 1.62E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15680 3a2f90607f247cb0b8ea0d681385ea25 216 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 1 203 3.0E-54 T 11-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain VV93_v1c08420 28ff71caa92138c7dbd70498db5a05b4 373 Pfam PF01098 Cell cycle protein 23 367 9.3E-114 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c08420 28ff71caa92138c7dbd70498db5a05b4 373 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 16 369 28.264 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c08420 28ff71caa92138c7dbd70498db5a05b4 373 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 324 348 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c08420 28ff71caa92138c7dbd70498db5a05b4 373 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 367 1.2E-135 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c26030 a09b4869071df8ef229754488e763d55 252 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 1 240 37.308 T 11-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 VV93_v1c26030 a09b4869071df8ef229754488e763d55 252 Pfam PF04794 YdjC-like protein 2 231 2.1E-50 T 11-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like VV93_v1c26030 a09b4869071df8ef229754488e763d55 252 SUPERFAMILY SSF88713 1 243 4.22E-66 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 VV93_v1c26030 a09b4869071df8ef229754488e763d55 252 Gene3D G3DSA:3.20.20.370 1 244 6.3E-70 T 11-10-2018 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 SUPERFAMILY SSF51726 1 354 1.38E-122 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 350 50.539 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 348 6.9E-140 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 1.9E-141 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 VV93_v1c28700 2e1501f420d07fd9941fa08e7a817f78 355 Gene3D G3DSA:3.20.20.210 1 355 3.5E-159 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 VV93_v1c42090 b184e76470753ff72534bb11030b3dfa 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 249 1.4E-23 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42090 b184e76470753ff72534bb11030b3dfa 255 SUPERFAMILY SSF53850 25 249 5.74E-37 T 11-10-2018 VV93_v1c42090 b184e76470753ff72534bb11030b3dfa 255 Gene3D G3DSA:3.40.190.10 108 211 7.6E-28 T 11-10-2018 VV93_v1c42090 b184e76470753ff72534bb11030b3dfa 255 SMART SM00062 24 252 3.3E-9 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42090 b184e76470753ff72534bb11030b3dfa 255 Gene3D G3DSA:3.40.190.10 30 248 7.6E-28 T 11-10-2018 VV93_v1c16260 091bbb04daafbc2bfe2ba4a6d5d56d6a 117 Pfam PF11665 Protein of unknown function (DUF3265) 1 20 3.9E-7 T 11-10-2018 IPR021681 Protein of unknown function DUF3265 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 Pfam PF03466 LysR substrate binding domain 90 285 4.2E-44 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 SUPERFAMILY SSF53850 90 286 2.17E-39 T 11-10-2018 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 Gene3D G3DSA:3.40.190.10 165 268 1.5E-37 T 11-10-2018 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 Gene3D G3DSA:1.10.10.10 3 89 9.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 Gene3D G3DSA:3.40.190.10 92 277 1.5E-37 T 11-10-2018 VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 SUPERFAMILY SSF46785 3 111 4.61E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c37330 e3c173540fb50809bab8b1acbd1a06c7 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.8E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 SUPERFAMILY SSF56796 5 381 6.67E-138 T 11-10-2018 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 Gene3D G3DSA:1.20.1090.10 184 382 4.5E-79 T 11-10-2018 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 Gene3D G3DSA:3.40.50.1970 2 183 2.6E-58 T 11-10-2018 VV93_v1c35340 c29f49d0eb8476555f9aa5df74bf3bf8 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 374 2.4E-128 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 PRINTS PR00721 Stomatin signature 141 162 6.1E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 PRINTS PR00721 Stomatin signature 94 116 6.1E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 PRINTS PR00721 Stomatin signature 197 220 6.1E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 TIGRFAM TIGR01933 hflK: HflK protein 89 349 1.9E-124 T 11-10-2018 IPR010201 HflK GO:0016021 VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 Pfam PF01145 SPFH domain / Band 7 family 91 262 2.0E-31 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 Pfam PF12221 Bacterial membrane protein N terminal 1 58 7.4E-14 T 11-10-2018 IPR020980 Menbrane protein HflK, N-terminal VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 SMART SM00244 87 247 1.9E-52 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 SUPERFAMILY SSF117892 120 252 8.5E-23 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily VV93_v1c27970 8df298d839681030beb360542fb55ec1 399 Gene3D G3DSA:3.30.479.30 117 249 4.6E-22 T 11-10-2018 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 7.1E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 7.1E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 7.1E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 7.1E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 8.4E-18 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 SMART SM00418 15 93 3.4E-30 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 Gene3D G3DSA:1.10.10.10 1 98 2.2E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c06230 6d9e403619ad65700271f2e31beabc4a 98 SUPERFAMILY SSF46785 9 96 6.02E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c35480 c8c9c7f15aa7f0ae4527966acd084dca 126 SUPERFAMILY SSF52091 4 125 9.81E-38 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c35480 c8c9c7f15aa7f0ae4527966acd084dca 126 Gene3D G3DSA:3.40.50.10600 1 125 3.8E-43 T 11-10-2018 IPR038396 SpoIIAA-like superfamily VV93_v1c35480 c8c9c7f15aa7f0ae4527966acd084dca 126 Pfam PF11964 SpoIIAA-like 20 124 1.3E-17 T 11-10-2018 IPR021866 SpoIIAA-like VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 Pfam PF00520 Ion transport protein 41 209 3.4E-17 T 11-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 Gene3D G3DSA:1.10.287.70 125 217 3.4E-23 T 11-10-2018 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 SUPERFAMILY SSF81324 13 210 9.68E-48 T 11-10-2018 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 PRINTS PR00169 Potassium channel signature 123 146 1.3E-7 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 PRINTS PR00169 Potassium channel signature 183 209 1.3E-7 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 PRINTS PR00169 Potassium channel signature 154 176 1.3E-7 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c05190 f3b07f879f0d9f52c02791c34f0dd174 250 Gene3D G3DSA:1.20.120.350 6 124 2.7E-16 T 11-10-2018 IPR027359 Voltage-dependent channel domain superfamily VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 SMART SM00357 6 70 6.4E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 PRINTS PR00050 Cold shock protein signature 28 37 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 PRINTS PR00050 Cold shock protein signature 7 22 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 PRINTS PR00050 Cold shock protein signature 43 61 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 6.8E-30 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 PIRSF PIRSF002599 1 70 4.6E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 SUPERFAMILY SSF50249 3 69 4.07E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c39940 0e57e86884458783f2926ca13088b68e 70 Gene3D G3DSA:2.40.50.140 2 70 6.4E-31 T 11-10-2018 VV93_v1c30290 2adfd1fa3e20c9cd1be3d8ca7d519f82 367 Pfam PF06580 Histidine kinase 170 248 1.9E-24 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 VV93_v1c30290 2adfd1fa3e20c9cd1be3d8ca7d519f82 367 SMART SM00387 263 360 6.9E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c30290 2adfd1fa3e20c9cd1be3d8ca7d519f82 367 Gene3D G3DSA:3.30.565.10 225 358 1.8E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c30290 2adfd1fa3e20c9cd1be3d8ca7d519f82 367 SUPERFAMILY SSF55874 229 357 1.83E-14 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 Pfam PF12592 Protein of unknown function (DUF3763) 486 537 9.5E-20 T 11-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 SMART SM00382 46 189 1.0E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 Pfam PF07728 AAA domain (dynein-related subfamily) 49 179 5.1E-23 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 Gene3D G3DSA:1.10.8.300 229 301 9.2E-27 T 11-10-2018 VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 Gene3D G3DSA:3.40.50.300 8 228 7.2E-59 T 11-10-2018 VV93_v1c35660 a6d6b28f338ebcca0574e1c4d1cd80e9 555 SUPERFAMILY SSF52540 21 303 2.0E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27910 5f655ab88016e86976af29a4435b45a6 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 47.14 T 11-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 VV93_v1c27910 5f655ab88016e86976af29a4435b45a6 141 Gene3D G3DSA:1.10.10.10 1 136 2.5E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c27910 5f655ab88016e86976af29a4435b45a6 141 SUPERFAMILY SSF46785 2 131 1.89E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c27910 5f655ab88016e86976af29a4435b45a6 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 1.7E-33 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type VV93_v1c27910 5f655ab88016e86976af29a4435b45a6 141 Pfam PF02082 Transcriptional regulator 1 82 4.9E-23 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 273 8.9E-20 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 Gene3D G3DSA:2.40.50.100 77 205 1.3E-49 T 11-10-2018 VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 Gene3D G3DSA:2.40.30.170 66 285 1.3E-49 T 11-10-2018 VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 Gene3D G3DSA:2.40.420.20 286 352 1.3E-49 T 11-10-2018 VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 SUPERFAMILY SSF111369 67 281 1.7E-28 T 11-10-2018 VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 Gene3D G3DSA:1.10.287.470 112 171 1.3E-49 T 11-10-2018 VV93_v1c24410 e70f1ae85673e20bf2996d7e29e23547 364 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 354 9.4E-46 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c10500 0d69f50a58c012c4bf8b50a434ae64eb 193 SUPERFAMILY SSF56925 29 191 2.56E-11 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c10500 0d69f50a58c012c4bf8b50a434ae64eb 193 Pfam PF13505 Outer membrane protein beta-barrel domain 7 193 5.1E-15 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c10500 0d69f50a58c012c4bf8b50a434ae64eb 193 Gene3D G3DSA:2.40.160.20 26 193 1.0E-6 T 11-10-2018 VV93_v1c02310 4e3d6b4687d0f4ae374546fafddebdaf 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 161 341 3.6E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c02310 4e3d6b4687d0f4ae374546fafddebdaf 347 Gene3D G3DSA:1.10.3720.10 133 338 5.2E-17 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c02310 4e3d6b4687d0f4ae374546fafddebdaf 347 SUPERFAMILY SSF161098 139 325 2.75E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 1 486 60.61 T 11-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 Gene3D G3DSA:3.40.309.10 253 446 1.6E-178 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 Gene3D G3DSA:3.40.605.10 18 474 1.6E-178 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 SUPERFAMILY SSF53720 3 478 4.71E-170 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c35140 d3f8a8b687743385eec07c61b959f613 486 Pfam PF00171 Aldehyde dehydrogenase family 15 474 3.0E-175 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c18760 d758d5d4461e08edd63603c3a6b15e4d 222 Pfam PF11201 Protein of unknown function (DUF2982) 67 216 9.2E-60 T 11-10-2018 IPR021367 Protein of unknown function DUF2982 VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 Pfam PF13023 HD domain 11 158 7.9E-18 T 11-10-2018 IPR006674 HD domain VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 194 47.094 T 11-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 SUPERFAMILY SSF109604 4 193 5.65E-43 T 11-10-2018 VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 SMART SM00471 26 151 2.9E-8 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 Gene3D G3DSA:1.10.3210.10 1 194 3.8E-85 T 11-10-2018 VV93_v1c10340 e264f2832744d3b9caceddcfd34a7c5d 194 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 176 6.0E-41 T 11-10-2018 VV93_v1c38270 ff74835957a78f19c8fd90e79c8e78cc 298 SUPERFAMILY SSF103481 168 268 7.72E-5 T 11-10-2018 VV93_v1c38270 ff74835957a78f19c8fd90e79c8e78cc 298 Pfam PF00892 EamA-like transporter family 133 269 2.1E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c38270 ff74835957a78f19c8fd90e79c8e78cc 298 Pfam PF00892 EamA-like transporter family 2 113 9.9E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c39980 0630a75f614b0c2c774b986523ea83a5 322 Gene3D G3DSA:1.20.58.1130 9 205 1.2E-89 T 11-10-2018 VV93_v1c39980 0630a75f614b0c2c774b986523ea83a5 322 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 313 6.7E-71 T 11-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 VV93_v1c39980 0630a75f614b0c2c774b986523ea83a5 322 Pfam PF01699 Sodium/calcium exchanger protein 6 144 1.0E-22 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VV93_v1c39980 0630a75f614b0c2c774b986523ea83a5 322 Pfam PF01699 Sodium/calcium exchanger protein 174 315 6.0E-32 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 VV93_v1c39980 0630a75f614b0c2c774b986523ea83a5 322 Gene3D G3DSA:1.20.1420.30 35 311 1.2E-89 T 11-10-2018 VV93_v1c33890 fc24e8856cb5520a9697d54e7b371e53 302 SUPERFAMILY SSF103481 188 287 9.81E-14 T 11-10-2018 VV93_v1c33890 fc24e8856cb5520a9697d54e7b371e53 302 SUPERFAMILY SSF103481 41 137 3.4E-12 T 11-10-2018 VV93_v1c33890 fc24e8856cb5520a9697d54e7b371e53 302 Pfam PF00892 EamA-like transporter family 3 135 2.4E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c33890 fc24e8856cb5520a9697d54e7b371e53 302 Pfam PF00892 EamA-like transporter family 151 280 9.1E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 SUPERFAMILY SSF53807 20 288 7.85E-74 T 11-10-2018 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 Gene3D G3DSA:3.40.50.1980 178 291 2.6E-36 T 11-10-2018 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 PRINTS PR00690 Adhesin family signature 177 198 2.2E-7 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 PRINTS PR00690 Adhesin family signature 50 63 2.2E-7 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 PRINTS PR00690 Adhesin family signature 230 248 2.2E-7 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 PRINTS PR00690 Adhesin family signature 63 80 2.2E-7 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 Gene3D G3DSA:3.40.50.1980 21 177 4.5E-44 T 11-10-2018 VV93_v1c09610 61da07b40dfb801e7920443d212873d7 291 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 277 4.5E-55 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 VV93_v1c12140 054fd1e7603a701f0d9345c16484396a 353 Gene3D G3DSA:3.40.1750.20 206 270 2.5E-44 T 11-10-2018 VV93_v1c12140 054fd1e7603a701f0d9345c16484396a 353 Gene3D G3DSA:3.90.226.10 109 306 2.5E-44 T 11-10-2018 VV93_v1c12140 054fd1e7603a701f0d9345c16484396a 353 Pfam PF08496 Peptidase family S49 N-terminal 2 162 4.1E-55 T 11-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 VV93_v1c12140 054fd1e7603a701f0d9345c16484396a 353 Pfam PF01343 Peptidase family S49 166 314 1.0E-46 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 VV93_v1c12140 054fd1e7603a701f0d9345c16484396a 353 SUPERFAMILY SSF52096 103 303 2.6E-30 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 402 2.2E-154 T 11-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 Gene3D G3DSA:1.20.81.30 57 172 6.8E-36 T 11-10-2018 VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 Gene3D G3DSA:1.20.81.30 257 368 1.4E-24 T 11-10-2018 VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 193 2.7E-33 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 Pfam PF00482 Type II secretion system (T2SS), protein F 273 395 2.7E-24 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 165 193 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 4.8E-36 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 4.8E-36 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 4.8E-36 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c01980 6ea0021a75bacb8634d262f44d2ff2f4 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 4.8E-36 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c30110 680a4076d802a365edd0c90f75a703c7 250 Gene3D G3DSA:3.40.190.10 93 205 8.4E-29 T 11-10-2018 VV93_v1c30110 680a4076d802a365edd0c90f75a703c7 250 SMART SM00062 26 247 3.2E-75 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c30110 680a4076d802a365edd0c90f75a703c7 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site VV93_v1c30110 680a4076d802a365edd0c90f75a703c7 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 245 7.5E-55 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c30110 680a4076d802a365edd0c90f75a703c7 250 SUPERFAMILY SSF53850 1 248 6.09E-57 T 11-10-2018 VV93_v1c20960 a3fe77526f258c3b96b166f6463b19b1 350 Gene3D G3DSA:3.30.70.270 182 345 3.3E-42 T 11-10-2018 VV93_v1c20960 a3fe77526f258c3b96b166f6463b19b1 350 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 191 343 3.8E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20960 a3fe77526f258c3b96b166f6463b19b1 350 SUPERFAMILY SSF55073 200 343 1.96E-34 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c20960 a3fe77526f258c3b96b166f6463b19b1 350 Pfam PF00990 Diguanylate cyclase, GGDEF domain 196 339 2.8E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c20960 a3fe77526f258c3b96b166f6463b19b1 350 SMART SM00267 184 344 6.1E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 PIRSF PIRSF028788 4 192 8.0E-40 T 11-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 Pfam PF04993 TfoX N-terminal domain 9 99 4.1E-26 T 11-10-2018 IPR007076 TfoX, N-terminal VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 Pfam PF04994 TfoX C-terminal domain 112 191 2.4E-28 T 11-10-2018 IPR007077 TfoX, C-terminal VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 Gene3D G3DSA:1.10.150.20 111 192 6.2E-18 T 11-10-2018 VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 SUPERFAMILY SSF159894 2 100 9.68E-29 T 11-10-2018 VV93_v1c13580 c6fe1497edc919411539df8a38454779 193 Gene3D G3DSA:3.30.1460.30 3 100 8.2E-21 T 11-10-2018 VV93_v1c01340 4920500efdeb56302b40857a6a4ad049 460 Gene3D G3DSA:3.40.50.300 180 381 5.1E-21 T 11-10-2018 VV93_v1c01340 4920500efdeb56302b40857a6a4ad049 460 Pfam PF04851 Type III restriction enzyme, res subunit 2 76 1.5E-5 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c01340 4920500efdeb56302b40857a6a4ad049 460 SUPERFAMILY SSF52540 16 355 1.45E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01340 4920500efdeb56302b40857a6a4ad049 460 Gene3D G3DSA:3.40.50.300 1 170 4.1E-14 T 11-10-2018 VV93_v1c34900 4920500efdeb56302b40857a6a4ad049 460 Gene3D G3DSA:3.40.50.300 180 381 5.1E-21 T 11-10-2018 VV93_v1c34900 4920500efdeb56302b40857a6a4ad049 460 Pfam PF04851 Type III restriction enzyme, res subunit 2 76 1.5E-5 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c34900 4920500efdeb56302b40857a6a4ad049 460 SUPERFAMILY SSF52540 16 355 1.45E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34900 4920500efdeb56302b40857a6a4ad049 460 Gene3D G3DSA:3.40.50.300 1 170 4.1E-14 T 11-10-2018 VV93_v1c13250 56fe2a5a2ef8a0f972b7b074410dfd07 148 Gene3D G3DSA:2.40.128.270 40 143 9.6E-31 T 11-10-2018 IPR038670 HslJ-like superfamily VV93_v1c13250 56fe2a5a2ef8a0f972b7b074410dfd07 148 Pfam PF03724 META domain 34 141 1.9E-26 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ VV93_v1c39230 bd505caad08a4954150489b8aa8d10f7 159 Gene3D G3DSA:2.30.110.20 2 158 1.7E-33 T 11-10-2018 IPR036624 Hcp1-like superfamily VV93_v1c39230 bd505caad08a4954150489b8aa8d10f7 159 SUPERFAMILY SSF141452 4 157 1.83E-35 T 11-10-2018 IPR036624 Hcp1-like superfamily VV93_v1c39230 bd505caad08a4954150489b8aa8d10f7 159 Pfam PF05638 Type VI secretion system effector, Hcp 6 133 4.1E-28 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 Pfam PF03481 Putative GTP-binding controlling metal-binding 205 325 3.1E-16 T 11-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 Gene3D G3DSA:3.40.50.11030 220 328 1.4E-9 T 11-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 SUPERFAMILY SSF55821 20 215 5.19E-62 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 PIRSF PIRSF004930 5 328 4.1E-112 T 11-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 Gene3D G3DSA:3.90.870.10 10 219 3.6E-78 T 11-10-2018 VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 Pfam PF01300 Telomere recombination 28 203 2.0E-56 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c07310 1d73e13ed2c428bc22a6c8b6d3a021bf 328 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 18 211 6.4E-60 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c15960 11b3cd5b2cf18e6ba8694427854741b4 195 Pfam PF11748 Protein of unknown function (DUF3306) 5 112 3.9E-20 T 11-10-2018 IPR021735 Protein of unknown function DUF3306 VV93_v1c43070 3f5fe76778cec833d030e09fffb80a8e 169 PIRSF PIRSF011443 1 169 3.3E-73 T 11-10-2018 IPR026267 Inner membrane protein YgjV VV93_v1c43070 3f5fe76778cec833d030e09fffb80a8e 169 Pfam PF10688 Bacterial inner membrane protein 6 162 4.9E-57 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV VV93_v1c00130 fd5809ea035b81c4a67ab944f8cd504c 81 Pfam PF01206 Sulfurtransferase TusA 10 79 1.0E-22 T 11-10-2018 IPR001455 TusA-like domain VV93_v1c00130 fd5809ea035b81c4a67ab944f8cd504c 81 SUPERFAMILY SSF64307 9 80 1.29E-24 T 11-10-2018 IPR036868 TusA-like domain superfamily VV93_v1c00130 fd5809ea035b81c4a67ab944f8cd504c 81 Gene3D G3DSA:3.30.110.40 5 80 1.2E-28 T 11-10-2018 IPR036868 TusA-like domain superfamily VV93_v1c00130 fd5809ea035b81c4a67ab944f8cd504c 81 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 28.815 T 11-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 VV93_v1c00130 fd5809ea035b81c4a67ab944f8cd504c 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 11-10-2018 IPR001455 TusA-like domain VV93_v1c17930 23b23f6b43b2639b2cee8bdffe8f9f13 163 Gene3D G3DSA:3.30.700.10 7 89 8.2E-11 T 11-10-2018 VV93_v1c17930 23b23f6b43b2639b2cee8bdffe8f9f13 163 SUPERFAMILY SSF54523 7 91 3.06E-11 T 11-10-2018 VV93_v1c17930 23b23f6b43b2639b2cee8bdffe8f9f13 163 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 1.0E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c17930 23b23f6b43b2639b2cee8bdffe8f9f13 163 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.0E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c17930 23b23f6b43b2639b2cee8bdffe8f9f13 163 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c32330 ee049c12ca71d28a31dd9604296ecabd 643 Gene3D G3DSA:3.30.1120.80 262 639 7.4E-182 T 11-10-2018 VV93_v1c32330 ee049c12ca71d28a31dd9604296ecabd 643 Pfam PF00884 Sulfatase 281 551 1.4E-48 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c32330 ee049c12ca71d28a31dd9604296ecabd 643 PIRSF PIRSF005091 7 642 8.9E-103 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like VV93_v1c32330 ee049c12ca71d28a31dd9604296ecabd 643 Gene3D G3DSA:3.40.720.10 272 568 7.4E-182 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c32330 ee049c12ca71d28a31dd9604296ecabd 643 SUPERFAMILY SSF53649 279 607 5.5E-70 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 Pfam PF02872 5'-nucleotidase, C-terminal domain 367 512 5.1E-34 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 SUPERFAMILY SSF55816 366 542 2.88E-51 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 487 506 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 36 54 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 211 228 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 242 265 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 287 307 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 PRINTS PR01607 Apyrase family signature 420 443 1.3E-51 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 Gene3D G3DSA:3.60.21.10 30 365 9.1E-126 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 ProSitePatterns PS00785 5'-nucleotidase signature 1. 38 50 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 SUPERFAMILY SSF56300 31 364 3.8E-97 T 11-10-2018 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 Pfam PF00149 Calcineurin-like phosphoesterase 38 259 2.2E-22 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 ProSitePatterns PS00786 5'-nucleotidase signature 2. 113 124 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c08670 5d58fe05c372e4cd7ba1259ab9486cfc 553 Gene3D G3DSA:3.90.780.10 366 552 2.3E-58 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 VV93_v1c31770 ed9da442205182dd4c63a02552e2ae5d 99 SUPERFAMILY SSF52794 2 94 6.8E-33 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c31770 ed9da442205182dd4c63a02552e2ae5d 99 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 7.7E-33 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VV93_v1c31770 ed9da442205182dd4c63a02552e2ae5d 99 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 4.0E-16 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c31770 ed9da442205182dd4c63a02552e2ae5d 99 Gene3D G3DSA:3.40.50.2300 1 98 9.2E-37 T 11-10-2018 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 Gene3D G3DSA:1.20.58.100 438 548 2.0E-44 T 11-10-2018 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 SUPERFAMILY SSF46977 439 538 3.53E-32 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 PIRSF PIRSF000171 345 543 2.9E-14 T 11-10-2018 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 PIRSF PIRSF000171 13 287 5.6E-26 T 11-10-2018 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 Gene3D G3DSA:3.50.50.60 23 417 6.5E-155 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 Gene3D G3DSA:3.90.700.10 261 371 6.5E-155 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 SUPERFAMILY SSF51905 14 460 1.67E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 20 533 8.5E-213 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 Pfam PF00890 FAD binding domain 23 405 1.0E-102 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 SUPERFAMILY SSF56425 251 366 6.13E-42 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 Pfam PF02910 Fumarate reductase flavoprotein C-term 454 535 6.6E-15 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 24 43 1.1E-8 T 11-10-2018 VV93_v1c25470 c6fa1dd45a326c9136a2cbdee403f80e 548 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 1.1E-8 T 11-10-2018 VV93_v1c20580 5d17c95428b55718c1e54d5a9e256f12 264 Pfam PF06629 MltA-interacting protein MipA 43 264 6.1E-40 T 11-10-2018 IPR010583 MltA-interacting MipA VV93_v1c36010 f44866b18800759852891b2c0cbb83dd 305 Pfam PF00482 Type II secretion system (T2SS), protein F 137 261 3.8E-18 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c36010 f44866b18800759852891b2c0cbb83dd 305 Gene3D G3DSA:1.20.81.30 125 240 2.8E-5 T 11-10-2018 VV93_v1c40260 3442d3f1bd94ec7acb84e0f2f32c39de 93 SUPERFAMILY SSF47413 2 61 7.74E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c40260 3442d3f1bd94ec7acb84e0f2f32c39de 93 Gene3D G3DSA:1.10.260.40 2 66 1.4E-5 T 11-10-2018 VV93_v1c44050 8a42a4a0297da7e21ba92b57ddb11b8d 244 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 217 237 2.8E-4 T 11-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 VV93_v1c44050 8a42a4a0297da7e21ba92b57ddb11b8d 244 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 10 237 5.0E-94 T 11-10-2018 IPR023998 Siderophore ferric iron reductase, AHA1954 family VV93_v1c09400 1b729dd4f4be99cff4b0e590f6138b03 73 Pfam PF10981 Protein of unknown function (DUF2788) 18 67 7.4E-18 T 11-10-2018 IPR021249 Protein of unknown function DUF2788 VV93_v1c18770 2ce2f6c4ccc726f3ba359cba6e898e4e 218 Gene3D G3DSA:3.60.15.10 3 213 3.9E-75 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c18770 2ce2f6c4ccc726f3ba359cba6e898e4e 218 SUPERFAMILY SSF56281 4 211 2.44E-55 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c18770 2ce2f6c4ccc726f3ba359cba6e898e4e 218 Pfam PF00753 Metallo-beta-lactamase superfamily 11 195 5.6E-28 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c18770 2ce2f6c4ccc726f3ba359cba6e898e4e 218 SMART SM00849 14 195 1.3E-37 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c18680 a2412d07582d2579254e3a19353531e4 523 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 73 520 6.1E-136 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VV93_v1c18680 a2412d07582d2579254e3a19353531e4 523 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 33 520 1.2E-173 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VV93_v1c18680 a2412d07582d2579254e3a19353531e4 523 ProSitePatterns PS01303 BCCT family of transporters signature. 336 345 - T 11-10-2018 IPR018093 BCCT transporter, conserved site VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Gene3D G3DSA:2.30.38.10 362 437 1.1E-25 T 11-10-2018 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Gene3D G3DSA:3.40.50.980 188 361 1.4E-53 T 11-10-2018 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Gene3D G3DSA:3.30.300.310 439 542 3.5E-29 T 11-10-2018 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 SUPERFAMILY SSF56801 11 540 3.4E-132 T 11-10-2018 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 7 535 8.8E-244 T 11-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 195 206 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 528 2.0E-11 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Pfam PF00501 AMP-binding enzyme 39 443 3.8E-76 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c42210 99233493ca65e14742ffaf60122e1ed4 545 Gene3D G3DSA:3.40.50.980 25 180 5.3E-39 T 11-10-2018 VV93_v1c13220 44893c6e66a322643b44d9cbd76497a9 216 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c13220 44893c6e66a322643b44d9cbd76497a9 216 Gene3D G3DSA:3.40.50.300 1 207 4.0E-53 T 11-10-2018 VV93_v1c13220 44893c6e66a322643b44d9cbd76497a9 216 Pfam PF00005 ABC transporter 20 163 1.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c13220 44893c6e66a322643b44d9cbd76497a9 216 SUPERFAMILY SSF52540 10 199 2.59E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c13220 44893c6e66a322643b44d9cbd76497a9 216 SMART SM00382 28 212 2.9E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c44930 cf82207ae4e4880f85a4e747b4cbcd8f 386 Gene3D G3DSA:1.10.3720.10 162 377 1.4E-21 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c44930 cf82207ae4e4880f85a4e747b4cbcd8f 386 SUPERFAMILY SSF161098 169 362 1.57E-22 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c44930 cf82207ae4e4880f85a4e747b4cbcd8f 386 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 78 1.5E-9 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VV93_v1c44930 cf82207ae4e4880f85a4e747b4cbcd8f 386 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 192 379 1.5E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 Pfam PF01715 IPP transferase 42 286 5.9E-87 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 Gene3D G3DSA:1.10.20.140 115 186 2.5E-106 T 11-10-2018 VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 SUPERFAMILY SSF52540 10 153 4.79E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 295 8.1E-116 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 Gene3D G3DSA:3.40.50.300 12 292 2.5E-106 T 11-10-2018 VV93_v1c28000 1a63b763f0d254631b870d82f5cb1486 315 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 308 29.866 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 Pfam PF00281 Ribosomal protein L5 24 80 1.0E-28 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 3.8E-40 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 PIRSF PIRSF002161 1 179 4.5E-64 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 Gene3D G3DSA:3.30.1440.10 1 179 4.2E-80 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 SUPERFAMILY SSF55282 4 179 9.89E-78 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03580 1a800ece89edc1b72f82dcb50c00ee2f 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.904 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22930 8d4df89d7fda3a1c8259da9050d3a4bd 63 Pfam PF14056 Domain of unknown function (DUF4250) 8 62 5.7E-21 T 11-10-2018 IPR025346 Protein of unknown function DUF4250 VV93_v1c44670 e795e341fbd0b7e8c5fed79ef0303557 173 PIRSF PIRSF011443 1 172 4.6E-46 T 11-10-2018 IPR026267 Inner membrane protein YgjV VV93_v1c44670 e795e341fbd0b7e8c5fed79ef0303557 173 Pfam PF10688 Bacterial inner membrane protein 5 161 2.0E-53 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV VV93_v1c41840 2522b552acf13a9787db31d93ee48f97 564 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 4 552 4.8E-107 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 VV93_v1c41840 2522b552acf13a9787db31d93ee48f97 564 Pfam PF02652 L-lactate permease 7 547 6.4E-109 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 VV93_v1c06450 7ac7719b8010fc2e4d98c8026574ab7e 178 Pfam PF01931 Protein of unknown function DUF84 9 167 3.5E-55 T 11-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 VV93_v1c06450 7ac7719b8010fc2e4d98c8026574ab7e 178 Hamap MF_00648 Non-canonical purine NTP phosphatase. 4 173 29.045 T 11-10-2018 IPR002786 Non-canonical purine NTP phosphatase VV93_v1c06450 7ac7719b8010fc2e4d98c8026574ab7e 178 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 8 172 3.9E-44 T 11-10-2018 IPR002786 Non-canonical purine NTP phosphatase VV93_v1c06450 7ac7719b8010fc2e4d98c8026574ab7e 178 Gene3D G3DSA:3.90.950.10 1 176 1.8E-65 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c06450 7ac7719b8010fc2e4d98c8026574ab7e 178 SUPERFAMILY SSF52972 4 173 1.31E-58 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c37260 b727a22e2c66eca835401df9a9bcc1c9 197 PIRSF PIRSF011489 1 196 1.2E-86 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 VV93_v1c37260 b727a22e2c66eca835401df9a9bcc1c9 197 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 7.8E-29 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 VV93_v1c22550 873d7f1a3b94c1b788230a07cd29aba8 229 Pfam PF06930 Protein of unknown function (DUF1282) 14 224 4.5E-58 T 11-10-2018 IPR009698 Protein of unknown function DUF1282 VV93_v1c04130 380b35f0e8e6f1f6a73a39020ac8a8b6 287 SUPERFAMILY SSF52540 1 156 1.46E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04130 380b35f0e8e6f1f6a73a39020ac8a8b6 287 Pfam PF03668 P-loop ATPase protein family 1 284 2.9E-110 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 VV93_v1c04130 380b35f0e8e6f1f6a73a39020ac8a8b6 287 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 283 39.506 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 VV93_v1c04130 380b35f0e8e6f1f6a73a39020ac8a8b6 287 PIRSF PIRSF005052 1 286 6.6E-107 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 VV93_v1c03760 57abe3de563172dfbb0a3beec335737b 290 Pfam PF00892 EamA-like transporter family 143 268 2.2E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c03760 57abe3de563172dfbb0a3beec335737b 290 Pfam PF00892 EamA-like transporter family 6 137 5.2E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c03760 57abe3de563172dfbb0a3beec335737b 290 SUPERFAMILY SSF103481 178 268 1.57E-13 T 11-10-2018 VV93_v1c03760 57abe3de563172dfbb0a3beec335737b 290 SUPERFAMILY SSF103481 41 141 7.72E-14 T 11-10-2018 VV93_v1c02980 f2de969e53455f3c1e9df404c08ec011 402 Pfam PF13439 Glycosyltransferase Family 4 13 219 3.4E-8 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c02980 f2de969e53455f3c1e9df404c08ec011 402 SUPERFAMILY SSF53756 4 362 7.85E-54 T 11-10-2018 VV93_v1c02980 f2de969e53455f3c1e9df404c08ec011 402 Pfam PF00534 Glycosyl transferases group 1 223 360 5.7E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 179 2.1E-51 T 11-10-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 PIRSF PIRSF000709 10 171 0.0025 T 11-10-2018 VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 SMART SM00855 2 151 2.4E-10 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 Gene3D G3DSA:3.40.50.1240 1 210 8.2E-53 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 183 1.5E-37 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c13870 38301d3eeffdde409dd39936687d3d0f 212 SUPERFAMILY SSF53254 1 184 9.64E-36 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c00800 033840be4dbca97071777052f620beb1 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 127 198 1.5E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c00800 033840be4dbca97071777052f620beb1 238 SUPERFAMILY SSF56784 10 236 3.58E-34 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c00800 033840be4dbca97071777052f620beb1 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 11 194 5.0E-11 T 11-10-2018 VV93_v1c00800 033840be4dbca97071777052f620beb1 238 Gene3D G3DSA:3.40.50.1000 12 231 6.0E-56 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c00800 033840be4dbca97071777052f620beb1 238 Gene3D G3DSA:1.20.120.1600 24 110 6.0E-56 T 11-10-2018 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Gene3D G3DSA:2.70.20.10 218 493 2.5E-164 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 3.9E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 408 424 3.9E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 526 540 3.9E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 3.9E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 327 336 3.9E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 638 5.0E-234 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Gene3D G3DSA:1.10.460.10 163 607 2.5E-164 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 SMART SM00436 129 224 5.8E-32 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 SMART SM00493 2 125 1.8E-27 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 321 336 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Pfam PF01131 DNA topoisomerase 161 597 1.7E-113 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 SMART SM00437 284 563 1.1E-86 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Gene3D G3DSA:1.10.290.10 293 422 2.5E-164 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Pfam PF01751 Toprim domain 4 134 6.5E-17 T 11-10-2018 IPR006171 TOPRIM domain VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 647 64.949 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 SUPERFAMILY SSF56712 3 612 6.02E-185 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain VV93_v1c10730 f21c233edf36b8fd05ee3ece68aa7eb3 656 Gene3D G3DSA:3.40.50.140 2 157 1.0E-61 T 11-10-2018 VV93_v1c24370 91599a36faeba755878ea1c9384f5160 138 PIRSF PIRSF016789 13 135 1.1E-31 T 11-10-2018 IPR007401 Protein of unknown function DUF454 VV93_v1c24370 91599a36faeba755878ea1c9384f5160 138 Pfam PF04304 Protein of unknown function (DUF454) 17 129 5.9E-33 T 11-10-2018 IPR007401 Protein of unknown function DUF454 VV93_v1c18460 b61720050f06500caa316b7953ae7daf 185 Gene3D G3DSA:3.90.1520.10 1 183 4.4E-55 T 11-10-2018 IPR038158 H-NOX domain superfamily GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 VV93_v1c18460 b61720050f06500caa316b7953ae7daf 185 SUPERFAMILY SSF111126 1 177 9.94E-50 T 11-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily VV93_v1c18460 b61720050f06500caa316b7953ae7daf 185 Pfam PF07700 Haem-NO-binding 2 162 1.3E-37 T 11-10-2018 IPR011644 Heme NO-binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 VV93_v1c18320 6006fe2c9508fc9c2e66314698e9e8d6 439 SUPERFAMILY SSF55073 295 436 2.43E-37 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c18320 6006fe2c9508fc9c2e66314698e9e8d6 439 SMART SM00267 279 438 1.2E-45 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18320 6006fe2c9508fc9c2e66314698e9e8d6 439 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 287 436 2.0E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c18320 6006fe2c9508fc9c2e66314698e9e8d6 439 Gene3D G3DSA:3.30.70.270 276 437 1.2E-46 T 11-10-2018 VV93_v1c18320 6006fe2c9508fc9c2e66314698e9e8d6 439 Pfam PF00990 Diguanylate cyclase, GGDEF domain 291 434 8.4E-36 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 37 400 57.61 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 SUPERFAMILY SSF51713 36 400 1.96E-164 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 Pfam PF01702 Queuine tRNA-ribosyltransferase 162 397 1.6E-96 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 Gene3D G3DSA:3.20.20.105 29 404 4.3E-175 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 39 405 3.2E-187 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c06920 72339aa6f9c3c2372c847a676acae250 412 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 39 404 1.7E-178 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 PRINTS PR01021 OMPA domain signature 209 225 3.0E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 PRINTS PR01021 OMPA domain signature 194 209 3.0E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 PRINTS PR01021 OMPA domain signature 164 186 3.0E-9 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 SUPERFAMILY SSF103088 153 264 7.06E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 Pfam PF00691 OmpA family 164 258 8.0E-22 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c15070 4e2bbf8c90d28d9c27b79e9545192651 280 Gene3D G3DSA:3.30.1330.60 145 271 5.2E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 TIGRFAM TIGR01752 flav_long: flavodoxin 4 170 2.7E-69 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 PIRSF PIRSF038996 1 174 2.0E-64 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 Pfam PF00258 Flavodoxin 6 162 1.2E-32 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 SUPERFAMILY SSF52218 4 173 1.47E-50 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c09390 22783c04f8856ed67c4e723b4c423fb0 177 Gene3D G3DSA:3.40.50.360 3 177 4.0E-54 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c02970 312f01b63e8e6f97833ebf46c4a64ec2 297 Gene3D G3DSA:3.90.550.10 3 271 6.0E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c02970 312f01b63e8e6f97833ebf46c4a64ec2 297 SUPERFAMILY SSF53448 14 233 1.78E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c02970 312f01b63e8e6f97833ebf46c4a64ec2 297 Pfam PF00535 Glycosyl transferase family 2 15 186 9.1E-17 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 SUPERFAMILY SSF54523 8 150 2.9E-15 T 11-10-2018 VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 Gene3D G3DSA:3.30.700.10 8 147 4.9E-12 T 11-10-2018 VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 4.1E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 2.2E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 PRINTS PR00885 Bacterial general secretion pathway protein H signature 148 157 4.0E-5 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 PRINTS PR00885 Bacterial general secretion pathway protein H signature 18 32 4.0E-5 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c34320 6494b7db38a00b38077a570e32ab4295 157 PRINTS PR00885 Bacterial general secretion pathway protein H signature 3 17 4.0E-5 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 VV93_v1c02700 27fe97cfa6583f948daae4788429cf48 288 Pfam PF03755 YicC-like family, N-terminal region 2 154 5.3E-44 T 11-10-2018 IPR013527 YicC-like, N-terminal VV93_v1c02700 27fe97cfa6583f948daae4788429cf48 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 3.8E-119 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 VV93_v1c02700 27fe97cfa6583f948daae4788429cf48 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 2.3E-34 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 SUPERFAMILY SSF46955 2 103 5.13E-22 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 SMART SM00422 2 70 1.1E-24 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 SUPERFAMILY SSF53335 130 355 8.86E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 Gene3D G3DSA:3.40.50.150 141 390 1.5E-52 T 11-10-2018 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 Pfam PF13411 MerR HTH family regulatory protein 2 69 6.9E-18 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 Gene3D G3DSA:1.10.1660.10 1 105 4.9E-23 T 11-10-2018 VV93_v1c01220 b6cbae2870f130be36459318d55ab710 392 Pfam PF13649 Methyltransferase domain 188 282 3.2E-17 T 11-10-2018 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 SUPERFAMILY SSF46955 2 103 5.13E-22 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.6E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 SMART SM00422 2 70 1.1E-24 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 SUPERFAMILY SSF53335 130 355 8.86E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 Gene3D G3DSA:3.40.50.150 141 390 1.5E-52 T 11-10-2018 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 Pfam PF13411 MerR HTH family regulatory protein 2 69 6.9E-18 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 Gene3D G3DSA:1.10.1660.10 1 105 4.9E-23 T 11-10-2018 VV93_v1c34780 b6cbae2870f130be36459318d55ab710 392 Pfam PF13649 Methyltransferase domain 188 282 3.2E-17 T 11-10-2018 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Pfam PF00085 Thioredoxin 7 109 3.1E-13 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Gene3D G3DSA:1.25.40.10 112 196 1.6E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Gene3D G3DSA:3.40.30.10 2 111 2.1E-21 T 11-10-2018 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 SUPERFAMILY SSF48452 115 246 9.87E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Pfam PF14559 Tetratricopeptide repeat 125 190 1.2E-11 T 11-10-2018 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Gene3D G3DSA:1.25.40.10 197 284 1.4E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 Pfam PF14561 Tetratricopeptide repeat 195 284 1.1E-26 T 11-10-2018 VV93_v1c09130 330e9e2fbaedf3244fcb68b37c2d1c8f 284 SUPERFAMILY SSF52833 4 111 4.62E-25 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 SUPERFAMILY SSF48452 65 314 6.96E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 Gene3D G3DSA:1.25.40.10 24 160 1.1E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 Gene3D G3DSA:1.25.40.10 161 317 4.5E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 SMART SM00028 127 160 18.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 SMART SM00028 207 240 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c33380 7623dbcd1e4100fb45e65cc1ea49d7c3 499 SMART SM00028 167 200 440.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c41530 2c2a8117cbb90b3b72d2106f571b83bd 424 Pfam PF01554 MatE 219 370 2.2E-14 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c41530 2c2a8117cbb90b3b72d2106f571b83bd 424 Pfam PF01554 MatE 2 160 2.8E-21 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c41530 2c2a8117cbb90b3b72d2106f571b83bd 424 PIRSF PIRSF006603 1 423 2.8E-77 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c41530 2c2a8117cbb90b3b72d2106f571b83bd 424 TIGRFAM TIGR00797 matE: MATE efflux family protein 2 382 7.8E-46 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c21680 fe4c48119444a55854ca90b31e655499 295 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 22 261 3.4E-22 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VV93_v1c21680 fe4c48119444a55854ca90b31e655499 295 SUPERFAMILY SSF52540 22 283 1.27E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21680 fe4c48119444a55854ca90b31e655499 295 PIRSF PIRSF003092 6 287 5.1E-86 T 11-10-2018 IPR025501 ATP binding protein MinD VV93_v1c21680 fe4c48119444a55854ca90b31e655499 295 Gene3D G3DSA:3.40.50.300 22 263 4.1E-59 T 11-10-2018 VV93_v1c18960 aad4531297b77dc4f8a5a8b41c68f313 150 Pfam PF04217 Protein of unknown function, DUF412 9 146 8.5E-60 T 11-10-2018 IPR007334 Uncharacterised protein family UPF0208 VV93_v1c18960 aad4531297b77dc4f8a5a8b41c68f313 150 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 5 150 37.537 T 11-10-2018 IPR007334 Uncharacterised protein family UPF0208 VV93_v1c25090 39b9594bf4321e2120294227c1b0693d 376 PIRSF PIRSF015658 1 376 6.1E-176 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VV93_v1c25090 39b9594bf4321e2120294227c1b0693d 376 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 370 2.3E-169 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VV93_v1c25090 39b9594bf4321e2120294227c1b0693d 376 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 374 1.0E-156 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 VV93_v1c09950 4e2e65a54ddb5d2bacfcbddf44c6b793 148 Gene3D G3DSA:3.10.129.10 11 140 3.8E-26 T 11-10-2018 VV93_v1c09950 4e2e65a54ddb5d2bacfcbddf44c6b793 148 Pfam PF13279 Thioesterase-like superfamily 18 118 3.8E-12 T 11-10-2018 VV93_v1c09950 4e2e65a54ddb5d2bacfcbddf44c6b793 148 SUPERFAMILY SSF54637 9 145 3.28E-30 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c07800 f8a170ce67954480117810a401b61b2b 519 Pfam PF03806 AbgT putative transporter family 19 517 1.3E-211 T 11-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 Pfam PF12838 4Fe-4S dicluster domain 34 79 5.0E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 139 150 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 23 160 23.913 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 SUPERFAMILY SSF54862 31 156 8.79E-19 T 11-10-2018 VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 19 154 1.7E-42 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 Pfam PF00037 4Fe-4S binding domain 132 152 1.3E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 Gene3D G3DSA:3.30.70.20 92 157 6.9E-10 T 11-10-2018 VV93_v1c41170 c2e164b9cabfae0cd7480305c83b7d38 160 Gene3D G3DSA:3.30.70.20 29 83 8.4E-12 T 11-10-2018 VV93_v1c13680 c77a84e822b350d4d6bb26ae2676d2e0 414 Pfam PF00266 Aminotransferase class-V 26 401 1.2E-70 T 11-10-2018 IPR000192 Aminotransferase class V domain VV93_v1c13680 c77a84e822b350d4d6bb26ae2676d2e0 414 Gene3D G3DSA:3.40.640.10 33 289 1.3E-135 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c13680 c77a84e822b350d4d6bb26ae2676d2e0 414 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 5 404 9.4E-165 T 11-10-2018 IPR011340 Cysteine desulfurase-related VV93_v1c13680 c77a84e822b350d4d6bb26ae2676d2e0 414 SUPERFAMILY SSF53383 5 410 2.69E-97 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c13680 c77a84e822b350d4d6bb26ae2676d2e0 414 Gene3D G3DSA:3.90.1150.10 24 405 1.3E-135 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c31170 c913c861ce6f7819fa5242a3cfe40c1a 210 Pfam PF13181 Tetratricopeptide repeat 136 154 0.024 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c31170 c913c861ce6f7819fa5242a3cfe40c1a 210 SUPERFAMILY SSF48452 58 180 1.42E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c31170 c913c861ce6f7819fa5242a3cfe40c1a 210 Gene3D G3DSA:1.25.40.10 23 210 2.4E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 SUPERFAMILY SSF53335 23 245 5.42E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 Gene3D G3DSA:3.40.50.150 21 245 2.3E-63 T 11-10-2018 VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 Pfam PF13649 Methyltransferase domain 63 161 9.9E-13 T 11-10-2018 VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 6 245 43.051 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 8 245 4.2E-117 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VV93_v1c20000 265e3d999a3375efa465c5ba3f612a62 245 PIRSF PIRSF006325 4 245 2.1E-124 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 Hamap MF_00551 Uridine kinase [udk]. 4 212 39.47 T 11-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 178 191 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 86 101 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 156 167 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 142 152 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 41 52 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 PRINTS PR00988 Uridine kinase signature 7 24 2.7E-36 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 9 198 1.0E-42 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 SUPERFAMILY SSF52540 8 204 4.87E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 Gene3D G3DSA:3.40.50.300 3 213 2.0E-61 T 11-10-2018 VV93_v1c11790 2df2b10e0e999efd81eadd9f6aca37f5 213 TIGRFAM TIGR00235 udk: uridine kinase 3 211 1.6E-90 T 11-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 VV93_v1c01740 ca6d989e18a60a6ab4aff7debe78572c 216 Pfam PF01926 50S ribosome-binding GTPase 29 147 1.2E-20 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c01740 ca6d989e18a60a6ab4aff7debe78572c 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 11 194 6.4E-73 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VV93_v1c01740 ca6d989e18a60a6ab4aff7debe78572c 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 15 198 27.303 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 VV93_v1c01740 ca6d989e18a60a6ab4aff7debe78572c 216 SUPERFAMILY SSF52540 16 201 1.2E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c01740 ca6d989e18a60a6ab4aff7debe78572c 216 Gene3D G3DSA:3.40.50.300 3 201 3.9E-57 T 11-10-2018 VV93_v1c19540 663eeffe253f8d9b1a4e7f97a0b5d5be 418 Pfam PF07005 Putative sugar-binding N-terminal domain 3 227 5.5E-68 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain VV93_v1c19540 663eeffe253f8d9b1a4e7f97a0b5d5be 418 SUPERFAMILY SSF142764 3 417 1.29E-130 T 11-10-2018 VV93_v1c19540 663eeffe253f8d9b1a4e7f97a0b5d5be 418 Gene3D G3DSA:3.40.50.10840 2 235 9.5E-87 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily VV93_v1c19540 663eeffe253f8d9b1a4e7f97a0b5d5be 418 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 255 410 3.0E-38 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain VV93_v1c19540 663eeffe253f8d9b1a4e7f97a0b5d5be 418 Gene3D G3DSA:3.40.980.20 241 418 1.1E-61 T 11-10-2018 VV93_v1c36760 106cc28e01c51cc0570a6c9a62738f0c 410 Pfam PF07690 Major Facilitator Superfamily 15 294 3.0E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c36760 106cc28e01c51cc0570a6c9a62738f0c 410 Gene3D G3DSA:1.20.1250.20 3 401 4.3E-56 T 11-10-2018 VV93_v1c36760 106cc28e01c51cc0570a6c9a62738f0c 410 SUPERFAMILY SSF103473 9 399 1.05E-56 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c43500 5ad13764e0d38421210ceac24737b1ac 298 SUPERFAMILY SSF103481 38 139 2.48E-13 T 11-10-2018 VV93_v1c43500 5ad13764e0d38421210ceac24737b1ac 298 SUPERFAMILY SSF103481 189 285 1.29E-15 T 11-10-2018 VV93_v1c43500 5ad13764e0d38421210ceac24737b1ac 298 Pfam PF00892 EamA-like transporter family 152 282 5.7E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c43500 5ad13764e0d38421210ceac24737b1ac 298 Pfam PF00892 EamA-like transporter family 9 137 1.8E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c09480 9aef2ba9dad0c1006af4c6c936bddb20 252 Pfam PF08907 Domain of unknown function (DUF1853) 8 216 6.4E-39 T 11-10-2018 IPR015003 Protein of unknown function DUF1853 VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Gene3D G3DSA:1.25.40.880 387 528 4.4E-59 T 11-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 SMART SM00849 129 351 2.5E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 SUPERFAMILY SSF56281 30 529 4.2E-147 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Gene3D G3DSA:3.30.1050.10 531 655 2.6E-31 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Pfam PF14864 Alkyl sulfatase C-terminal 536 655 6.4E-30 T 11-10-2018 IPR029229 Alkyl sulfatase, C-terminal VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 SUPERFAMILY SSF55718 538 655 4.0E-27 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Gene3D G3DSA:3.60.15.30 27 386 4.0E-149 T 11-10-2018 VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Pfam PF00753 Metallo-beta-lactamase superfamily 125 351 1.0E-32 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c44280 b7338159aa891bf3a964b59927d74765 655 Pfam PF14863 Alkyl sulfatase dimerisation 388 527 3.3E-57 T 11-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 Gene3D G3DSA:3.50.50.60 150 271 2.5E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 3.4E-68 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 6.7E-64 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 SUPERFAMILY SSF51905 1 322 9.72E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PIRSF PIRSF000350 1 469 5.2E-82 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 2.7E-35 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 Gene3D G3DSA:3.30.390.30 346 467 1.3E-44 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 460 3.0E-149 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 Gene3D G3DSA:3.50.50.60 9 332 2.5E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 SUPERFAMILY SSF55424 343 466 6.36E-39 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.8E-41 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 8.8E-41 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 8.8E-41 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 8.8E-41 T 11-10-2018 VV93_v1c24830 d36fec7e5c9e03de236a2a9a1b7b093f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 8.8E-41 T 11-10-2018 VV93_v1c25450 5b585db78b176fddcc3a90499846dacd 206 PIRSF PIRSF016938 1 194 4.3E-31 T 11-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 VV93_v1c25450 5b585db78b176fddcc3a90499846dacd 206 SUPERFAMILY SSF89069 4 67 6.28E-21 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VV93_v1c25450 5b585db78b176fddcc3a90499846dacd 206 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 137 189 1.9E-20 T 11-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal VV93_v1c25450 5b585db78b176fddcc3a90499846dacd 206 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 95 1.3E-34 T 11-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 VV93_v1c25450 5b585db78b176fddcc3a90499846dacd 206 Gene3D G3DSA:1.10.10.880 2 67 1.9E-23 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 VV93_v1c03150 054b8aaf9dde9d5ba91f0fa3b5de58c1 265 Gene3D G3DSA:3.10.560.10 168 240 3.8E-17 T 11-10-2018 VV93_v1c03150 054b8aaf9dde9d5ba91f0fa3b5de58c1 265 Pfam PF06251 Capsule biosynthesis GfcC 34 263 1.6E-75 T 11-10-2018 IPR010425 Domain of unknown function DUF1017 VV93_v1c43760 f23e3a2a5f275d90bfc05e631b23d3b3 706 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 24 696 1.7E-209 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ VV93_v1c43760 f23e3a2a5f275d90bfc05e631b23d3b3 706 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 123 611 4.6E-73 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c22920 dac668854aaa3a43dc81ca9773c6c435 67 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 7 65 2.0E-27 T 11-10-2018 IPR009624 Uncharacterised protein family UPF0253 VV93_v1c22920 dac668854aaa3a43dc81ca9773c6c435 67 Pfam PF06786 Uncharacterised protein family (UPF0253) 1 67 2.3E-36 T 11-10-2018 IPR009624 Uncharacterised protein family UPF0253 VV93_v1c22920 dac668854aaa3a43dc81ca9773c6c435 67 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 67 28.429 T 11-10-2018 IPR009624 Uncharacterised protein family UPF0253 VV93_v1c18800 c300f91c11e53b1fff59aa377ee4d5f9 364 Pfam PF07433 Protein of unknown function (DUF1513) 71 362 1.8E-113 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 VV93_v1c18800 c300f91c11e53b1fff59aa377ee4d5f9 364 PIRSF PIRSF028101 4 364 5.9E-169 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 VV93_v1c18800 c300f91c11e53b1fff59aa377ee4d5f9 364 SUPERFAMILY SSF50969 64 318 1.02E-9 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 12 255 8.7E-74 T 11-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 9.6E-16 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 9.6E-16 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 9.6E-16 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 9.6E-16 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VV93_v1c21720 c775fd835389e64bfcecbaa075d77ed8 260 Pfam PF01311 Bacterial export proteins, family 1 13 243 3.0E-56 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 VV93_v1c00460 56cb6f256d233a498c5aa8466e31dec2 190 TIGRFAM TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family 5 189 1.1E-61 T 11-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like VV93_v1c00460 56cb6f256d233a498c5aa8466e31dec2 190 Gene3D G3DSA:1.10.10.10 127 190 6.0E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c00460 56cb6f256d233a498c5aa8466e31dec2 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 189 1.5E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 VV93_v1c00460 56cb6f256d233a498c5aa8466e31dec2 190 Pfam PF07638 ECF sigma factor 6 189 1.6E-31 T 11-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like VV93_v1c00460 56cb6f256d233a498c5aa8466e31dec2 190 SUPERFAMILY SSF88659 123 189 4.86E-6 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like VV93_v1c35500 f75b7a05c4d1c7447abbb3c289f650b3 417 Pfam PF03222 Tryptophan/tyrosine permease family 30 407 9.1E-15 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 Pfam PF01368 DHH family 2 142 8.6E-22 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 Pfam PF02833 DHHA2 domain 180 297 1.9E-14 T 11-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 SMART SM01131 178 300 3.8E-30 T 11-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 Gene3D G3DSA:3.10.310.20 188 300 1.4E-20 T 11-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 Gene3D G3DSA:3.90.1640.10 1 186 7.2E-64 T 11-10-2018 VV93_v1c12940 27f9218790534c3f5435d470c41fef08 301 SUPERFAMILY SSF64182 1 297 4.32E-67 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 Pfam PF04352 ProQ/FINO family 6 113 7.2E-43 T 11-10-2018 IPR016103 ProQ/FinO domain VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 Gene3D G3DSA:1.10.1710.10 1 119 6.7E-24 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 Hamap MF_00749 RNA chaperone ProQ [proQ]. 1 207 30.443 T 11-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 SUPERFAMILY SSF48657 4 117 2.22E-39 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 SMART SM00945 3 117 3.2E-63 T 11-10-2018 IPR016103 ProQ/FinO domain VV93_v1c15210 f4557bf42c1c2d3ba9554c9a1e38006a 207 Pfam PF17516 ProQ C-terminal domain 158 206 2.6E-22 T 11-10-2018 IPR035236 RNA chaperone ProQ, C-terminal VV93_v1c19100 328e194502ddf334fc60f7d047f0bf56 177 Gene3D G3DSA:1.20.1290.10 11 174 7.6E-39 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VV93_v1c19100 328e194502ddf334fc60f7d047f0bf56 177 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 119 5.3E-17 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VV93_v1c19100 328e194502ddf334fc60f7d047f0bf56 177 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 55 103 8.4E-14 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 VV93_v1c19100 328e194502ddf334fc60f7d047f0bf56 177 SUPERFAMILY SSF69118 18 173 2.4E-39 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Gene3D G3DSA:3.40.50.150 169 371 7.1E-136 T 11-10-2018 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Gene3D G3DSA:3.40.50.150 488 706 1.2E-74 T 11-10-2018 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Gene3D G3DSA:3.30.750.80 396 487 7.3E-36 T 11-10-2018 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Gene3D G3DSA:3.30.2130.30 6 255 7.1E-136 T 11-10-2018 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 305 311 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 11-10-2018 IPR000241 Putative RNA methylase domain VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 SMART SM00981 56 154 3.3E-20 T 11-10-2018 IPR004114 THUMP domain GO:0003723 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Pfam PF02926 THUMP domain 32 153 7.4E-12 T 11-10-2018 IPR004114 THUMP domain GO:0003723 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 PIRSF PIRSF037618 1 707 1.1E-297 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Pfam PF01170 Putative RNA methylase family UPF0020 162 374 1.4E-61 T 11-10-2018 IPR000241 Putative RNA methylase domain VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 434 667 2.1E-26 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 706 31.545 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 SUPERFAMILY SSF53335 139 371 3.54E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c15290 a0ac20435d256fb69df8feb4d3bcaf8d 707 SUPERFAMILY SSF53335 399 706 6.2E-70 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c15280 6edf11114436c31ff7a8b95303943445 180 Hamap MF_00906 Cell division protein ZapC [zapC]. 1 177 38.971 T 11-10-2018 IPR009809 Cell division protein ZapC VV93_v1c15280 6edf11114436c31ff7a8b95303943445 180 PIRSF PIRSF010252 1 178 5.6E-69 T 11-10-2018 IPR009809 Cell division protein ZapC VV93_v1c15280 6edf11114436c31ff7a8b95303943445 180 Pfam PF07126 Cell-division protein ZapC 1 168 9.2E-63 T 11-10-2018 IPR009809 Cell division protein ZapC VV93_v1c35650 858635904e3df0e419b78ffe7ef006ba 171 Pfam PF00293 NUDIX domain 33 149 2.6E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c35650 858635904e3df0e419b78ffe7ef006ba 171 Gene3D G3DSA:3.90.79.10 1 167 1.6E-45 T 11-10-2018 VV93_v1c35650 858635904e3df0e419b78ffe7ef006ba 171 ProSitePatterns PS00893 Nudix box signature. 68 89 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c35650 858635904e3df0e419b78ffe7ef006ba 171 SUPERFAMILY SSF55811 2 168 6.5E-42 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c29440 11f88e2d88c719941d36f082d02fd4d0 159 Pfam PF04361 Protein of unknown function (DUF494) 2 159 7.8E-59 T 11-10-2018 IPR007456 Smg VV93_v1c29440 11f88e2d88c719941d36f082d02fd4d0 159 Hamap MF_00598 Protein Smg [smg]. 2 159 32.651 T 11-10-2018 IPR007456 Smg VV93_v1c41350 2b2b2350d65e7425239c679e018c3c34 115 PIRSF PIRSF028226 1 115 1.6E-57 T 11-10-2018 IPR014176 Phasin, subfamily 3 VV93_v1c41350 2b2b2350d65e7425239c679e018c3c34 115 TIGRFAM TIGR02809 phasin_3: phasin family protein 4 113 1.2E-55 T 11-10-2018 IPR014176 Phasin, subfamily 3 VV93_v1c41350 2b2b2350d65e7425239c679e018c3c34 115 Pfam PF09361 Phasin protein 8 108 9.8E-21 T 11-10-2018 IPR018968 Phasin VV93_v1c44650 4853d9fa34422c0d55b712b6e454613f 325 SUPERFAMILY SSF53613 1 314 5.3E-68 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c44650 4853d9fa34422c0d55b712b6e454613f 325 Pfam PF00294 pfkB family carbohydrate kinase 1 314 6.8E-61 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c44650 4853d9fa34422c0d55b712b6e454613f 325 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 269 282 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VV93_v1c44650 4853d9fa34422c0d55b712b6e454613f 325 Gene3D G3DSA:3.40.1190.20 1 320 1.1E-75 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c44640 aa5c2564ad7cc354357f27874d6b207f 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 468 50.225 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 VV93_v1c44640 aa5c2564ad7cc354357f27874d6b207f 470 Gene3D G3DSA:1.10.2020.10 46 137 1.9E-202 T 11-10-2018 VV93_v1c44640 aa5c2564ad7cc354357f27874d6b207f 470 SUPERFAMILY SSF51556 2 466 7.82E-183 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c44640 aa5c2564ad7cc354357f27874d6b207f 470 Gene3D G3DSA:3.20.20.140 7 466 1.9E-202 T 11-10-2018 VV93_v1c44640 aa5c2564ad7cc354357f27874d6b207f 470 Pfam PF02614 Glucuronate isomerase 1 466 3.5E-230 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 VV93_v1c16650 c54ac3eb62df8b80d56e3c364b51605b 80 Gene3D G3DSA:3.40.1620.10 1 49 1.5E-6 T 11-10-2018 VV93_v1c16650 c54ac3eb62df8b80d56e3c364b51605b 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 56 1.9E-10 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM VV93_v1c16650 c54ac3eb62df8b80d56e3c364b51605b 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 50 2.5E-13 T 11-10-2018 VV93_v1c16650 c54ac3eb62df8b80d56e3c364b51605b 80 SUPERFAMILY SSF143120 1 75 3.23E-14 T 11-10-2018 IPR036165 YefM-like superfamily VV93_v1c14600 a4270eccf337cf3e0a7a219910982a8c 365 SUPERFAMILY SSF161098 155 346 1.57E-40 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14600 a4270eccf337cf3e0a7a219910982a8c 365 Gene3D G3DSA:1.10.3720.10 147 363 1.2E-48 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14600 a4270eccf337cf3e0a7a219910982a8c 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 173 357 6.8E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c14600 a4270eccf337cf3e0a7a219910982a8c 365 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 155 251 5.6E-22 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 VV93_v1c34700 eebe5954811162b4b31315aa7baab910 172 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c34700 eebe5954811162b4b31315aa7baab910 172 SUPERFAMILY SSF55811 9 142 2.03E-21 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c34700 eebe5954811162b4b31315aa7baab910 172 Pfam PF00293 NUDIX domain 23 143 5.8E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c34700 eebe5954811162b4b31315aa7baab910 172 Gene3D G3DSA:3.90.79.10 13 150 7.6E-25 T 11-10-2018 VV93_v1c41120 cc8e2c1bfab67a725ddb112a9651c140 146 SUPERFAMILY SSF55785 10 128 6.81E-12 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c41120 cc8e2c1bfab67a725ddb112a9651c140 146 Pfam PF00989 PAS fold 16 134 1.9E-7 T 11-10-2018 IPR013767 PAS fold GO:0006355 VV93_v1c41120 cc8e2c1bfab67a725ddb112a9651c140 146 Gene3D G3DSA:3.30.450.20 6 140 3.8E-32 T 11-10-2018 VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 Gene3D G3DSA:3.40.50.300 2 241 1.7E-71 T 11-10-2018 VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 3.4E-126 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 SUPERFAMILY SSF52540 3 237 2.43E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 Pfam PF00005 ABC transporter 20 166 5.6E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 SMART SM00382 28 202 2.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c04170 480d699968dbb75a5e5732500c592b15 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 1.4E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VV93_v1c00920 4a9da6f432eb46f6afeeb9fb2ea223b1 405 SUPERFAMILY SSF103473 9 399 8.76E-34 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c00920 4a9da6f432eb46f6afeeb9fb2ea223b1 405 Gene3D G3DSA:1.20.1250.20 208 401 2.2E-9 T 11-10-2018 VV93_v1c00920 4a9da6f432eb46f6afeeb9fb2ea223b1 405 Gene3D G3DSA:1.20.1250.20 7 201 8.5E-15 T 11-10-2018 VV93_v1c00920 4a9da6f432eb46f6afeeb9fb2ea223b1 405 Pfam PF07690 Major Facilitator Superfamily 19 276 3.8E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c37640 0fd48093de4d500a2d2d0d5f1930aa8e 813 Pfam PF02687 FtsX-like permease family 721 803 6.9E-7 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c37640 0fd48093de4d500a2d2d0d5f1930aa8e 813 Pfam PF02687 FtsX-like permease family 279 371 2.5E-7 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c37640 0fd48093de4d500a2d2d0d5f1930aa8e 813 Pfam PF12704 MacB-like periplasmic core domain 29 192 1.9E-7 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c18810 69a6371013b6553019ade219a6bc506b 341 Gene3D G3DSA:1.20.1420.20 32 341 4.2E-71 T 11-10-2018 IPR038352 Imelysin-like domain superfamily VV93_v1c18810 69a6371013b6553019ade219a6bc506b 341 Pfam PF09375 Imelysin 42 319 2.1E-45 T 11-10-2018 IPR018976 Imelysin-like domain VV93_v1c23050 d229d5d565b7955a5cf41e480b17f761 210 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.946 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VV93_v1c23050 d229d5d565b7955a5cf41e480b17f761 210 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 207 4.0E-110 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 VV93_v1c23050 d229d5d565b7955a5cf41e480b17f761 210 PIRSF PIRSF006102 3 210 4.0E-73 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c23050 d229d5d565b7955a5cf41e480b17f761 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 1.7E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 SUPERFAMILY SSF51717 15 208 3.92E-10 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 Pfam PF04551 GcpE protein 14 354 1.3E-132 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 35.17 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 SUPERFAMILY SSF56014 265 354 2.28E-11 T 11-10-2018 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 PIRSF PIRSF004640 1 364 1.2E-147 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 4.8E-127 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 Gene3D G3DSA:3.20.20.20 1 261 1.9E-104 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 VV93_v1c07120 7c0e5874638b8631bc75e221e2d4d494 372 Gene3D G3DSA:3.30.413.10 262 362 2.8E-25 T 11-10-2018 VV93_v1c40010 962327788012813f8a8dbe0797271335 205 Gene3D G3DSA:1.20.1050.10 84 198 1.2E-33 T 11-10-2018 VV93_v1c40010 962327788012813f8a8dbe0797271335 205 Gene3D G3DSA:3.40.30.10 1 83 9.3E-33 T 11-10-2018 VV93_v1c40010 962327788012813f8a8dbe0797271335 205 SUPERFAMILY SSF52833 1 77 7.74E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c40010 962327788012813f8a8dbe0797271335 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 7.7E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c40010 962327788012813f8a8dbe0797271335 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 192 2.0E-11 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal VV93_v1c40010 962327788012813f8a8dbe0797271335 205 SUPERFAMILY SSF47616 72 201 4.18E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 Gene3D G3DSA:3.20.20.80 42 441 4.6E-69 T 11-10-2018 VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 SUPERFAMILY SSF51011 449 524 2.56E-7 T 11-10-2018 VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 Gene3D G3DSA:2.60.40.1180 442 523 6.8E-6 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 SUPERFAMILY SSF51445 41 446 5.8E-71 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 SMART SM00642 52 436 1.4E-32 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 Pfam PF00128 Alpha amylase, catalytic domain 78 166 2.8E-27 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c32310 ac3cfa037f7acd95f69a8f8519e0ba9f 673 Pfam PF00128 Alpha amylase, catalytic domain 195 380 2.3E-14 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 436 1.7E-128 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 1 435 34.199 T 11-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 Pfam PF13286 Phosphohydrolase-associated domain 346 433 5.1E-26 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 SMART SM00471 58 264 2.1E-8 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 SUPERFAMILY SSF109604 19 437 3.58E-79 T 11-10-2018 VV93_v1c10330 929443fedb782937fed13465fcf38d21 439 Pfam PF01966 HD domain 62 146 4.8E-8 T 11-10-2018 IPR006674 HD domain VV93_v1c24740 b14b398978f507253e701f01f3937b96 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 1.9E-37 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c24740 b14b398978f507253e701f01f3937b96 161 SUPERFAMILY SSF55083 1 157 8.24E-55 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c24740 b14b398978f507253e701f01f3937b96 161 Gene3D G3DSA:3.30.70.560 1 159 1.5E-59 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c24740 b14b398978f507253e701f01f3937b96 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c24740 b14b398978f507253e701f01f3937b96 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 6.5E-47 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 VV93_v1c17520 b745f36e11c83793610e93bd10d1b5b6 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 384 2.1E-61 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VV93_v1c17520 b745f36e11c83793610e93bd10d1b5b6 401 SUPERFAMILY SSF103473 9 389 1.15E-58 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c17520 b745f36e11c83793610e93bd10d1b5b6 401 Pfam PF07690 Major Facilitator Superfamily 15 354 6.8E-44 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c17520 b745f36e11c83793610e93bd10d1b5b6 401 Gene3D G3DSA:1.20.1720.10 10 385 7.6E-99 T 11-10-2018 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 12 389 1.2E-188 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 SUPERFAMILY SSF52440 2 110 6.91E-34 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 SUPERFAMILY SSF56059 111 313 1.63E-56 T 11-10-2018 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 Gene3D G3DSA:3.30.1490.20 121 194 8.8E-33 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 Pfam PF02222 ATP-grasp domain 121 293 3.3E-58 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 Gene3D G3DSA:3.30.470.20 195 389 1.1E-58 T 11-10-2018 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 SUPERFAMILY SSF51246 317 389 1.35E-17 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 Gene3D G3DSA:3.40.50.20 1 120 1.6E-53 T 11-10-2018 VV93_v1c17230 861425f9107ca4ac1c9526181d0ccc1a 391 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 6 390 51.357 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 VV93_v1c14280 21bcd649857e5fff82b0709fb10b8f9c 800 SUPERFAMILY SSF49452 710 767 1.61E-5 T 11-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 VV93_v1c14280 21bcd649857e5fff82b0709fb10b8f9c 800 Pfam PF00577 Outer membrane usher protein 256 607 2.0E-5 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 VV93_v1c13960 2c9a6eb1ab859f70cb7428f34d7d0580 76 Gene3D G3DSA:3.40.30.10 1 73 1.7E-15 T 11-10-2018 VV93_v1c13960 2c9a6eb1ab859f70cb7428f34d7d0580 76 SUPERFAMILY SSF52833 3 72 4.28E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c13960 2c9a6eb1ab859f70cb7428f34d7d0580 76 Pfam PF00462 Glutaredoxin 4 60 1.8E-12 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 VV93_v1c13960 2c9a6eb1ab859f70cb7428f34d7d0580 76 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 VV93_v1c44620 d71139605329e4a84e6c496d8ecd4195 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 422 1.4E-115 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c44620 d71139605329e4a84e6c496d8ecd4195 433 PIRSF PIRSF006066 4 433 6.9E-167 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c44620 d71139605329e4a84e6c496d8ecd4195 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 427 4.4E-138 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 125 159 1.8E-5 T 11-10-2018 IPR001451 Hexapeptide repeat VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 SUPERFAMILY SSF51161 3 205 5.82E-36 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 170 198 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 Gene3D G3DSA:2.160.10.10 91 211 1.4E-24 T 11-10-2018 VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 7 207 1.7E-55 T 11-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like VV93_v1c03030 43e29aca296276e6977a7a8be203298c 212 Gene3D G3DSA:3.40.50.20 3 90 1.8E-12 T 11-10-2018 VV93_v1c36910 0023990453c09341fbc8f3bf820af867 126 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.7E-51 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VV93_v1c36910 0023990453c09341fbc8f3bf820af867 126 SUPERFAMILY SSF51230 3 125 9.16E-45 T 11-10-2018 IPR011053 Single hybrid motif VV93_v1c36910 0023990453c09341fbc8f3bf820af867 126 Pfam PF01597 Glycine cleavage H-protein 5 125 4.4E-50 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate VV93_v1c36910 0023990453c09341fbc8f3bf820af867 126 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 2 124 41.518 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 VV93_v1c36910 0023990453c09341fbc8f3bf820af867 126 Gene3D G3DSA:2.40.50.100 1 126 7.7E-51 T 11-10-2018 VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Gene3D G3DSA:3.40.50.300 210 372 1.8E-47 T 11-10-2018 VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Pfam PF03880 DbpA RNA binding domain 385 455 1.1E-19 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 SMART SM00487 22 219 5.5E-58 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 SUPERFAMILY SSF52540 72 358 2.5E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 SMART SM00490 256 337 2.3E-30 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Gene3D G3DSA:3.30.70.330 385 458 1.6E-17 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Gene3D G3DSA:3.40.50.300 2 209 1.9E-72 T 11-10-2018 VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Pfam PF00271 Helicase conserved C-terminal domain 230 337 2.0E-28 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c36430 9ca3094a92f9b6f25ed397e3eaffaf17 459 Pfam PF00270 DEAD/DEAH box helicase 27 193 2.8E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c25780 32ea8255c62a43aa942f35e6c4f708fe 370 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 5 344 5.9E-127 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 VV93_v1c25780 32ea8255c62a43aa942f35e6c4f708fe 370 SUPERFAMILY SSF52540 5 336 1.94E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c25780 32ea8255c62a43aa942f35e6c4f708fe 370 Gene3D G3DSA:3.30.450.90 1 99 2.3E-23 T 11-10-2018 VV93_v1c25780 32ea8255c62a43aa942f35e6c4f708fe 370 Pfam PF00437 Type II/IV secretion system protein 92 269 7.7E-37 T 11-10-2018 IPR001482 Type II/IV secretion system protein VV93_v1c25780 32ea8255c62a43aa942f35e6c4f708fe 370 Gene3D G3DSA:3.40.50.300 101 357 1.0E-87 T 11-10-2018 VV93_v1c21190 c17fa26cf2079d7a7c2c57329bb078ed 181 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 177 5.5E-72 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VV93_v1c21190 c17fa26cf2079d7a7c2c57329bb078ed 181 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 37.638 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 VV93_v1c21190 c17fa26cf2079d7a7c2c57329bb078ed 181 Gene3D G3DSA:3.40.50.2020 1 181 9.9E-66 T 11-10-2018 VV93_v1c21190 c17fa26cf2079d7a7c2c57329bb078ed 181 SUPERFAMILY SSF53271 11 178 1.1E-51 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c21190 c17fa26cf2079d7a7c2c57329bb078ed 181 Pfam PF00156 Phosphoribosyl transferase domain 30 145 1.4E-14 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c04560 9e5a30df31c23cfe8a7b1049bf484668 255 Pfam PF08239 Bacterial SH3 domain 130 182 1.4E-11 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type VV93_v1c04560 9e5a30df31c23cfe8a7b1049bf484668 255 Gene3D G3DSA:2.30.30.40 125 183 2.5E-9 T 11-10-2018 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 Pfam PF01063 Amino-transferase class IV 24 247 1.3E-40 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 Gene3D G3DSA:3.30.470.10 1 107 1.3E-27 T 11-10-2018 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 Gene3D G3DSA:3.20.10.10 112 266 2.0E-47 T 11-10-2018 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 262 1.2E-106 T 11-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 VV93_v1c11950 cac1913ed3ae495a3aa30005bab107d9 267 SUPERFAMILY SSF56752 1 259 2.35E-67 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VV93_v1c43310 df732e74b2f5db0b4bc144db07c9d33e 403 Pfam PF07690 Major Facilitator Superfamily 16 242 1.3E-9 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c43310 df732e74b2f5db0b4bc144db07c9d33e 403 Pfam PF07690 Major Facilitator Superfamily 248 396 1.5E-10 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c43310 df732e74b2f5db0b4bc144db07c9d33e 403 SUPERFAMILY SSF103473 12 398 2.62E-35 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c43310 df732e74b2f5db0b4bc144db07c9d33e 403 Gene3D G3DSA:1.20.1250.20 2 394 3.6E-26 T 11-10-2018 VV93_v1c04520 db33e068d98ba6c5ad2b48e8734d498d 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.059 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VV93_v1c04520 db33e068d98ba6c5ad2b48e8734d498d 200 Gene3D G3DSA:3.20.19.10 1 180 1.1E-77 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 VV93_v1c04520 db33e068d98ba6c5ad2b48e8734d498d 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 2.2E-97 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 VV93_v1c04520 db33e068d98ba6c5ad2b48e8734d498d 200 Pfam PF00694 Aconitase C-terminal domain 1 125 1.0E-38 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 VV93_v1c04520 db33e068d98ba6c5ad2b48e8734d498d 200 SUPERFAMILY SSF52016 1 193 5.49E-60 T 11-10-2018 VV93_v1c00070 f39290b9234703ecc0e5352e9ea4f390 418 Pfam PF00155 Aminotransferase class I and II 67 399 4.2E-26 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c00070 f39290b9234703ecc0e5352e9ea4f390 418 Gene3D G3DSA:3.40.640.10 1 416 5.4E-148 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c00070 f39290b9234703ecc0e5352e9ea4f390 418 SUPERFAMILY SSF53383 13 410 7.43E-60 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c14110 04ce4863da37190110d5578d43d0be61 263 SUPERFAMILY SSF53850 37 244 1.28E-13 T 11-10-2018 VV93_v1c43530 7cae5d43291fc6bab00ab5f566dd754f 287 SUPERFAMILY SSF103481 39 145 5.49E-6 T 11-10-2018 VV93_v1c43530 7cae5d43291fc6bab00ab5f566dd754f 287 Pfam PF00892 EamA-like transporter family 154 282 3.4E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c43530 7cae5d43291fc6bab00ab5f566dd754f 287 Pfam PF00892 EamA-like transporter family 6 141 3.7E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c43530 7cae5d43291fc6bab00ab5f566dd754f 287 SUPERFAMILY SSF103481 210 284 7.45E-11 T 11-10-2018 VV93_v1c44810 490e1101031f6bd40cd63cbc3b85c2ec 325 SUPERFAMILY SSF55909 19 313 2.55E-36 T 11-10-2018 VV93_v1c44810 490e1101031f6bd40cd63cbc3b85c2ec 325 Pfam PF02274 Amidinotransferase 23 318 2.4E-62 T 11-10-2018 VV93_v1c44810 490e1101031f6bd40cd63cbc3b85c2ec 325 PIRSF PIRSF028188 4 321 5.3E-150 T 11-10-2018 IPR014541 Predicted amidinotransferase, FN0238 type VV93_v1c44810 490e1101031f6bd40cd63cbc3b85c2ec 325 Gene3D G3DSA:3.75.10.10 19 313 1.1E-43 T 11-10-2018 VV93_v1c37760 9dd5b9c096e4eaa46ab2c0a0c01d0720 124 Pfam PF11782 Protein of unknown function (DUF3319) 1 89 1.5E-46 T 11-10-2018 IPR021753 Protein of unknown function DUF3319 VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 SUPERFAMILY SSF56300 4 257 2.36E-53 T 11-10-2018 VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 269 47.946 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 Gene3D G3DSA:3.60.21.10 2 269 1.3E-74 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 2 267 2.1E-118 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 Pfam PF00149 Calcineurin-like phosphoesterase 5 163 4.3E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c04430 443df3412b5b77a6eced4e016cdce4c7 269 PIRSF PIRSF000903 1 269 3.6E-122 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 VV93_v1c35460 592a939864da09fa29176841bd722744 367 Gene3D G3DSA:3.30.830.10 201 350 1.7E-5 T 11-10-2018 VV93_v1c24140 16f808cf061135e7e609f9aef17fad93 443 TIGRFAM TIGR00797 matE: MATE efflux family protein 15 410 5.0E-48 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c24140 16f808cf061135e7e609f9aef17fad93 443 PIRSF PIRSF006603 1 441 3.1E-66 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c24140 16f808cf061135e7e609f9aef17fad93 443 Pfam PF01554 MatE 15 176 9.9E-27 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c24140 16f808cf061135e7e609f9aef17fad93 443 Pfam PF01554 MatE 240 398 9.5E-9 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c06500 00442f93c300bde1af218ef0271997a3 238 Gene3D G3DSA:3.60.140.10 1 237 6.6E-87 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily VV93_v1c06500 00442f93c300bde1af218ef0271997a3 238 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 17 236 5.7E-72 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VV93_v1c06500 00442f93c300bde1af218ef0271997a3 238 SUPERFAMILY SSF64438 2 238 2.01E-83 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic VV93_v1c06500 00442f93c300bde1af218ef0271997a3 238 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 28 237 3.9E-58 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase VV93_v1c08660 dff37732f3f6734e69f51e208f9ffd83 284 Pfam PF00793 DAHP synthetase I family 11 276 1.7E-69 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c08660 dff37732f3f6734e69f51e208f9ffd83 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 14 278 48.368 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c08660 dff37732f3f6734e69f51e208f9ffd83 284 SUPERFAMILY SSF51569 3 279 7.97E-105 T 11-10-2018 VV93_v1c08660 dff37732f3f6734e69f51e208f9ffd83 284 Gene3D G3DSA:3.20.20.70 1 284 6.0E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c08660 dff37732f3f6734e69f51e208f9ffd83 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 19 276 2.3E-116 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 Pfam PF00072 Response regulator receiver domain 3 94 6.6E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 SUPERFAMILY SSF46894 119 211 6.5E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 SUPERFAMILY SSF52172 2 100 3.7E-26 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 Gene3D G3DSA:3.40.50.2300 1 111 5.2E-23 T 11-10-2018 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 SMART SM00448 1 94 3.3E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 Pfam PF00486 Transcriptional regulatory protein, C terminal 135 210 1.3E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 SMART SM00862 134 210 2.8E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c41700 3ae74b3ea16050bf0f5e872694903381 214 Gene3D G3DSA:1.10.10.10 112 213 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c06670 cfca6b7d9c5f18374d5869f0702089a8 84 SUPERFAMILY SSF54862 4 72 3.35E-17 T 11-10-2018 VV93_v1c06670 cfca6b7d9c5f18374d5869f0702089a8 84 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c06670 cfca6b7d9c5f18374d5869f0702089a8 84 Gene3D G3DSA:3.30.70.20 2 83 1.7E-34 T 11-10-2018 VV93_v1c06670 cfca6b7d9c5f18374d5869f0702089a8 84 Pfam PF00037 4Fe-4S binding domain 5 25 6.6E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c08640 4bc067087f79c2a25607e16c6eb17680 127 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 123 2.5E-37 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VV93_v1c08640 4bc067087f79c2a25607e16c6eb17680 127 PIRSF PIRSF005610 1 121 9.4E-16 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VV93_v1c03930 499200c27f4205ee506394dc1192c0d0 69 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 2.0E-32 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 VV93_v1c03930 499200c27f4205ee506394dc1192c0d0 69 Pfam PF06526 Protein of unknown function (DUF1107) 2 64 8.8E-27 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 VV93_v1c03930 499200c27f4205ee506394dc1192c0d0 69 Gene3D G3DSA:3.30.1910.10 2 65 1.2E-19 T 11-10-2018 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 Pfam PF01430 Hsp33 protein 6 272 2.4E-79 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 PIRSF PIRSF005261 1 284 4.6E-71 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 Gene3D G3DSA:1.10.287.480 178 224 1.7E-23 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 Hamap MF_00117 33 kDa chaperonin [hslO]. 3 283 32.028 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 SUPERFAMILY SSF118352 224 282 9.42E-18 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 Gene3D G3DSA:3.55.30.10 1 175 9.3E-62 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 Gene3D G3DSA:3.90.1280.10 225 284 4.3E-20 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 VV93_v1c01930 5f3965c3bcb9da71911865986ba1755f 291 SUPERFAMILY SSF64397 4 231 4.71E-75 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 SMART SM00491 543 675 8.6E-28 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 Pfam PF06733 DEAD_2 202 265 1.0E-4 T 11-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 Gene3D G3DSA:3.40.50.300 503 693 5.6E-34 T 11-10-2018 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 Gene3D G3DSA:3.40.50.300 30 309 2.4E-39 T 11-10-2018 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 SUPERFAMILY SSF52540 511 670 8.32E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 Pfam PF13307 Helicase C-terminal domain 529 688 1.6E-36 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 37 694 36.419 T 11-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 VV93_v1c20390 5cd130fc3f9fee4aea4d90d5f4e9775c 695 SUPERFAMILY SSF52540 19 671 2.96E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 1 381 4.9E-91 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 Pfam PF01238 Phosphomannose isomerase type I 2 353 7.1E-81 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PIRSF PIRSF001480 1 389 8.7E-100 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 29 44 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 254 273 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 219 234 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 235 254 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 77 98 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 273 292 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 1 15 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 PRINTS PR00714 Phosphomannose isomerase type I signature 122 145 8.2E-68 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 SUPERFAMILY SSF51182 1 380 1.2E-101 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 Gene3D G3DSA:2.60.120.10 3 274 4.1E-128 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 122 130 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 Gene3D G3DSA:1.10.441.10 146 299 4.1E-128 T 11-10-2018 VV93_v1c40070 2e2a87bd2dfb4fd807ebfd4d784ff4d7 389 Gene3D G3DSA:2.60.120.10 300 381 4.1E-128 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c44360 ebc62a1d20fd2ed4586389db689ec854 85 Pfam PF11212 Protein of unknown function (DUF2999) 1 82 4.4E-45 T 11-10-2018 IPR021376 Protein of unknown function DUF2999 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 166 195 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 238 265 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 94 118 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 31 47 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 266 292 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PRINTS PR00073 Coprogen oxidase signature 129 151 3.7E-69 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 170 194 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 Pfam PF01218 Coproporphyrinogen III oxidase 9 305 3.7E-132 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 PIRSF PIRSF000166 2 305 6.8E-129 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 SUPERFAMILY SSF102886 5 305 6.54E-138 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 Gene3D G3DSA:3.40.1500.10 1 305 1.1E-137 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29390 575f30b23c352056f22956ccdc79605e 305 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 281 55.895 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 VV93_v1c29630 6d42fea9643003966f3309a3df30b8a9 94 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 70 9.0E-4 T 11-10-2018 VV93_v1c29630 6d42fea9643003966f3309a3df30b8a9 94 SUPERFAMILY SSF55021 3 76 1.33E-10 T 11-10-2018 VV93_v1c29630 6d42fea9643003966f3309a3df30b8a9 94 Pfam PF13710 ACT domain 12 73 7.4E-21 T 11-10-2018 VV93_v1c29630 6d42fea9643003966f3309a3df30b8a9 94 Gene3D G3DSA:3.30.70.260 1 90 2.5E-11 T 11-10-2018 VV93_v1c40640 fb10f1b02d2c9aa94b1eda7298adb7cd 140 Gene3D G3DSA:2.20.25.10 1 43 1.5E-22 T 11-10-2018 VV93_v1c40640 fb10f1b02d2c9aa94b1eda7298adb7cd 140 Pfam PF02566 OsmC-like protein 38 133 5.8E-18 T 11-10-2018 IPR003718 OsmC/Ohr family VV93_v1c40640 fb10f1b02d2c9aa94b1eda7298adb7cd 140 Gene3D G3DSA:3.30.300.20 44 140 7.5E-33 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c40640 fb10f1b02d2c9aa94b1eda7298adb7cd 140 SUPERFAMILY SSF82784 1 135 9.42E-41 T 11-10-2018 IPR036102 OsmC/Ohr superfamily VV93_v1c40640 fb10f1b02d2c9aa94b1eda7298adb7cd 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 135 4.9E-52 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 Pfam PF01614 Bacterial transcriptional regulator 126 251 9.6E-39 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 Gene3D G3DSA:1.10.10.10 4 77 3.1E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 SUPERFAMILY SSF46785 10 81 5.64E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 Gene3D G3DSA:3.30.450.40 83 260 1.1E-58 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 Pfam PF09339 IclR helix-turn-helix domain 12 62 1.0E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 SUPERFAMILY SSF55781 74 256 4.25E-50 T 11-10-2018 VV93_v1c43090 685e2b5522ceca89e3215905f5c8413d 260 SMART SM00346 10 99 1.6E-28 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Gene3D G3DSA:1.10.760.10 209 295 1.9E-73 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Gene3D G3DSA:1.20.58.1490 1 94 7.5E-35 T 11-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 SUPERFAMILY SSF46626 238 323 3.58E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 241 315 3.4E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 154 228 6.6E-14 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 113 322 6.3E-59 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 SUPERFAMILY SSF46626 55 238 1.86E-30 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 PIRSF PIRSF000006 1 322 1.5E-109 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Gene3D G3DSA:1.10.760.10 143 318 1.9E-73 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 PRINTS PR00605 Class IC cytochrome C signature 206 228 1.6E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 PRINTS PR00605 Class IC cytochrome C signature 164 175 1.6E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 VV93_v1c15640 bd354a3df68d4f1679889e83aee1141d 325 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 38 83 2.7E-23 T 11-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal VV93_v1c21030 8b11dbe2f00460a01f48dc8be419ac7a 141 Gene3D G3DSA:1.10.3990.20 47 140 3.0E-31 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily VV93_v1c21030 8b11dbe2f00460a01f48dc8be419ac7a 141 Pfam PF13467 Ribbon-helix-helix domain 55 121 4.0E-23 T 11-10-2018 IPR027373 Ribbon-helix-helix domain VV93_v1c32050 f80ee1e74300ad118d995acb2c13a082 250 Gene3D G3DSA:2.60.120.620 8 249 9.6E-79 T 11-10-2018 VV93_v1c32050 f80ee1e74300ad118d995acb2c13a082 250 Pfam PF10014 2OG-Fe dioxygenase 51 243 2.5E-61 T 11-10-2018 IPR018724 2OG-Fe dioxygenase VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 PIRSF PIRSF036917 1 685 0.0 T 11-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 Gene3D G3DSA:3.20.20.80 186 427 6.7E-58 T 11-10-2018 VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 Pfam PF00128 Alpha amylase, catalytic domain 236 606 1.9E-53 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 Gene3D G3DSA:3.20.20.80 428 653 1.6E-39 T 11-10-2018 VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 SUPERFAMILY SSF51445 189 654 2.54E-97 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c42880 ee9b7337e1d2022facb50dcc1d8f9963 687 SMART SM00642 203 646 1.0E-95 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 VV93_v1c12810 81df0e395ec063be28e5a8a199e5c20f 77 Pfam PF06146 Phosphate-starvation-inducible E 9 68 1.1E-9 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like VV93_v1c12810 81df0e395ec063be28e5a8a199e5c20f 77 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 77 2.8E-38 T 11-10-2018 IPR013468 Conserved hypothetical protein CHP02647 VV93_v1c42050 1e9921f6b931409697537a45e781d46a 186 SUPERFAMILY SSF50475 8 113 7.33E-11 T 11-10-2018 VV93_v1c42050 1e9921f6b931409697537a45e781d46a 186 Gene3D G3DSA:2.30.110.10 3 127 3.4E-19 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c42050 1e9921f6b931409697537a45e781d46a 186 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 98 8.1E-8 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 148 1.9E-29 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 Gene3D G3DSA:2.170.130.10 28 153 2.3E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 Gene3D G3DSA:2.40.170.20 156 613 2.5E-107 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 36 - T 11-10-2018 IPR010916 TonB box, conserved site VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 Pfam PF00593 TonB dependent receptor 184 612 3.0E-47 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 SUPERFAMILY SSF56935 29 613 4.12E-117 T 11-10-2018 VV93_v1c01540 74944d4e5785cb9e071a8bcf518ae888 613 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 613 33.518 T 11-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 VV93_v1c20850 4dccdc1116b665db3758c7d764d4d199 252 Pfam PF01048 Phosphorylase superfamily 20 240 2.0E-40 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 VV93_v1c20850 4dccdc1116b665db3758c7d764d4d199 252 SUPERFAMILY SSF53167 4 251 6.02E-72 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 VV93_v1c20850 4dccdc1116b665db3758c7d764d4d199 252 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 5 251 1.4E-109 T 11-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 VV93_v1c20850 4dccdc1116b665db3758c7d764d4d199 252 Gene3D G3DSA:3.40.50.1580 1 252 2.2E-80 T 11-10-2018 VV93_v1c20850 4dccdc1116b665db3758c7d764d4d199 252 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 65 80 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Pfam PF07196 Flagellin hook IN motif 195 249 2.2E-9 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Gene3D G3DSA:1.10.8.410 328 376 2.1E-20 T 11-10-2018 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Gene3D G3DSA:1.20.1330.10 44 327 6.3E-75 T 11-10-2018 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 PRINTS PR00207 Flagellin signature 37 54 2.5E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 PRINTS PR00207 Flagellin signature 111 134 2.5E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 PRINTS PR00207 Flagellin signature 76 95 2.5E-27 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 1.4E-25 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 2.6E-42 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 SUPERFAMILY SSF64518 1 376 1.44E-97 T 11-10-2018 VV93_v1c21940 98400b65ad2e52d138180c0ff491342d 377 Gene3D G3DSA:3.30.70.2120 174 275 6.3E-75 T 11-10-2018 VV93_v1c15530 5e9c005dc2baa335e1b72bdf5a8800ea 114 Pfam PF10734 Protein of unknown function (DUF2523) 33 110 5.0E-6 T 11-10-2018 IPR019670 Protein of unkown function DUF2523 VV93_v1c37990 5e9c005dc2baa335e1b72bdf5a8800ea 114 Pfam PF10734 Protein of unknown function (DUF2523) 33 110 5.0E-6 T 11-10-2018 IPR019670 Protein of unkown function DUF2523 VV93_v1c37820 5e9c005dc2baa335e1b72bdf5a8800ea 114 Pfam PF10734 Protein of unknown function (DUF2523) 33 110 5.0E-6 T 11-10-2018 IPR019670 Protein of unkown function DUF2523 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 283 1.6E-42 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 Hamap MF_00008 Thymidylate synthase [thyA]. 1 283 33.406 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 Gene3D G3DSA:3.30.572.10 1 283 1.8E-80 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 SUPERFAMILY SSF55831 2 283 2.88E-91 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 PRINTS PR00108 Thymidylate synthase family signature 211 228 7.7E-14 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 PRINTS PR00108 Thymidylate synthase family signature 44 65 7.7E-14 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 PRINTS PR00108 Thymidylate synthase family signature 173 199 7.7E-14 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 PRINTS PR00108 Thymidylate synthase family signature 129 148 7.7E-14 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 ProSitePatterns PS00091 Thymidylate synthase active site. 140 168 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c06190 8abd770796337a055dd2ce38c16f53e0 283 Pfam PF00303 Thymidylate synthase 2 283 1.4E-74 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 581 637 2.3E-9 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 339 9.0E-62 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 SUPERFAMILY SSF64518 171 637 1.96E-24 T 11-10-2018 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 408 425 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 158 182 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 125 145 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c08970 73baf06718e3d75444813b675673cbe2 638 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 9.5E-14 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 VV93_v1c24030 98216d6e03d501b3376473860783fdb5 45 Pfam PF17320 Family of unknown function (DUF5363) 2 43 3.2E-9 T 11-10-2018 IPR035292 Protein of unknown function DUF5363 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 SUPERFAMILY SSF53067 146 234 4.92E-22 T 11-10-2018 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 Gene3D G3DSA:3.30.420.380 4 233 2.2E-88 T 11-10-2018 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 SUPERFAMILY SSF53067 2 144 1.68E-43 T 11-10-2018 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 Gene3D G3DSA:3.30.420.370 142 211 2.2E-88 T 11-10-2018 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 Pfam PF05134 Type II secretion system (T2SS), protein L 5 236 1.2E-76 T 11-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 Gene3D G3DSA:3.30.1360.100 313 399 6.5E-29 T 11-10-2018 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 Pfam PF12693 GspL periplasmic domain 241 398 1.3E-53 T 11-10-2018 IPR025691 GspL periplasmic domain VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 5 397 1.4E-97 T 11-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VV93_v1c02040 89712924eba7eabef9338ea92b564c74 399 PIRSF PIRSF015761 19 398 4.9E-31 T 11-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 VV93_v1c19870 da8ba56b3830ce7a3db2ceaf1470200d 146 Gene3D G3DSA:3.30.420.270 63 137 9.8E-19 T 11-10-2018 VV93_v1c19870 da8ba56b3830ce7a3db2ceaf1470200d 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 144 5.2E-25 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VV93_v1c19870 da8ba56b3830ce7a3db2ceaf1470200d 146 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 5 144 28.183 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 VV93_v1c39280 8ac2ce822d012fde61c52d76b765d121 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 61 491 2.5E-161 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VV93_v1c39280 8ac2ce822d012fde61c52d76b765d121 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 46 491 4.2E-135 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VV93_v1c07640 84f7adba317a3b1539cbae71643c5975 294 Pfam PF01513 ATP-NAD kinase 8 273 1.1E-68 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VV93_v1c07640 84f7adba317a3b1539cbae71643c5975 294 Hamap MF_00361 NAD kinase [nadK]. 6 289 33.784 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VV93_v1c07640 84f7adba317a3b1539cbae71643c5975 294 Gene3D G3DSA:3.40.50.10330 23 289 1.2E-91 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 VV93_v1c07640 84f7adba317a3b1539cbae71643c5975 294 SUPERFAMILY SSF111331 8 290 1.22E-91 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VV93_v1c07640 84f7adba317a3b1539cbae71643c5975 294 Gene3D G3DSA:2.60.200.30 129 266 1.2E-91 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 VV93_v1c13780 0338822aa7a8beadae550bfd942e6e55 130 Pfam PF03846 Cell division inhibitor SulA 27 96 3.2E-5 T 11-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 VV93_v1c13780 0338822aa7a8beadae550bfd942e6e55 130 Gene3D G3DSA:3.40.50.300 16 123 2.8E-10 T 11-10-2018 VV93_v1c13780 0338822aa7a8beadae550bfd942e6e55 130 SUPERFAMILY SSF52540 20 99 2.23E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44020 4cc3a4b05ecbbc3a6bde0f4d56099098 423 Pfam PF02321 Outer membrane efflux protein 230 407 6.0E-27 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c44020 4cc3a4b05ecbbc3a6bde0f4d56099098 423 Pfam PF02321 Outer membrane efflux protein 28 204 1.0E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c44020 4cc3a4b05ecbbc3a6bde0f4d56099098 423 SUPERFAMILY SSF56954 4 412 9.55E-77 T 11-10-2018 VV93_v1c44020 4cc3a4b05ecbbc3a6bde0f4d56099098 423 Gene3D G3DSA:1.20.1600.10 26 422 7.0E-77 T 11-10-2018 VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 Pfam PF00270 DEAD/DEAH box helicase 27 198 8.2E-58 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 Pfam PF00271 Helicase conserved C-terminal domain 237 342 7.5E-28 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 SMART SM00490 261 342 3.3E-30 T 11-10-2018 IPR001650 Helicase, C-terminal VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 Gene3D G3DSA:3.40.50.300 216 416 1.8E-48 T 11-10-2018 VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 Gene3D G3DSA:3.40.50.300 1 214 1.7E-83 T 11-10-2018 VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 SMART SM00487 22 225 1.1E-66 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain VV93_v1c37270 1acdce28a504ec62f34ef1a317600cde 418 SUPERFAMILY SSF52540 77 363 6.25E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c00420 527202f1fcd16c67a0e03d5a5ecba7e5 314 SUPERFAMILY SSF110997 72 144 1.7E-7 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c00420 527202f1fcd16c67a0e03d5a5ecba7e5 314 Pfam PF05036 Sporulation related domain 74 143 2.0E-9 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c28410 84b9cdf592fcbfa96925ed0af64758bd 435 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 434 3.5E-180 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c28410 84b9cdf592fcbfa96925ed0af64758bd 435 PIRSF PIRSF004539 1 435 1.1E-177 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c28410 84b9cdf592fcbfa96925ed0af64758bd 435 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 367 2.6E-145 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 VV93_v1c39250 9c859f86cacf251587daf1d8f0209db9 929 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 607 3.6E-197 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like VV93_v1c39250 9c859f86cacf251587daf1d8f0209db9 929 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 618 914 8.9E-59 T 11-10-2018 IPR010732 Type VI secretion, TssG-like VV93_v1c39250 9c859f86cacf251587daf1d8f0209db9 929 Pfam PF05947 Type VI secretion system, TssF 6 606 2.6E-177 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like VV93_v1c39250 9c859f86cacf251587daf1d8f0209db9 929 Pfam PF06996 Type VI secretion, TssG 619 914 7.3E-65 T 11-10-2018 IPR010732 Type VI secretion, TssG-like VV93_v1c20420 bff80c452c2b14a994c848c02b0848a5 55 Pfam PF10689 Protein of unknown function (DUF2496) 8 50 1.6E-23 T 11-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related VV93_v1c05260 b30cbae627f95b186ba54e9bb13c1e39 274 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 205 260 3.0E-27 T 11-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 VV93_v1c05260 b30cbae627f95b186ba54e9bb13c1e39 274 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 14 260 42.747 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 VV93_v1c05260 b30cbae627f95b186ba54e9bb13c1e39 274 SUPERFAMILY SSF56300 14 272 2.34E-56 T 11-10-2018 VV93_v1c05260 b30cbae627f95b186ba54e9bb13c1e39 274 Gene3D G3DSA:3.60.21.10 2 272 6.1E-69 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c05260 b30cbae627f95b186ba54e9bb13c1e39 274 Pfam PF00149 Calcineurin-like phosphoesterase 15 206 3.7E-15 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c34040 ff127cc68a2e45534f5bceebb60fcd03 153 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.8E-4 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c34040 ff127cc68a2e45534f5bceebb60fcd03 153 SUPERFAMILY SSF46689 1 74 1.23E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c34040 ff127cc68a2e45534f5bceebb60fcd03 153 Gene3D G3DSA:1.20.5.830 111 153 2.3E-23 T 11-10-2018 IPR027402 LuxT regulator, C-terminal domain superfamily VV93_v1c34040 ff127cc68a2e45534f5bceebb60fcd03 153 Gene3D G3DSA:1.10.10.60 2 60 4.3E-8 T 11-10-2018 VV93_v1c34040 ff127cc68a2e45534f5bceebb60fcd03 153 Gene3D G3DSA:1.10.287.790 61 110 5.2E-28 T 11-10-2018 IPR027404 LuxT regulator, helix hairpin domain superfamily VV93_v1c09020 b03d4a597312b87d6ed8743043d67614 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VV93_v1c09020 b03d4a597312b87d6ed8743043d67614 169 SUPERFAMILY SSF51261 18 166 1.5E-55 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c09020 b03d4a597312b87d6ed8743043d67614 169 Gene3D G3DSA:2.70.70.10 9 169 1.0E-61 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c09020 b03d4a597312b87d6ed8743043d67614 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.8E-49 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VV93_v1c09020 b03d4a597312b87d6ed8743043d67614 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 1.4E-50 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 VV93_v1c19320 b33672d2b00a961c356510f1cbd9e54f 107 Pfam PF01381 Helix-turn-helix 17 62 1.2E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c19320 b33672d2b00a961c356510f1cbd9e54f 107 SUPERFAMILY SSF47413 11 71 8.85E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c19320 b33672d2b00a961c356510f1cbd9e54f 107 Gene3D G3DSA:1.10.260.40 2 77 1.4E-32 T 11-10-2018 VV93_v1c19320 b33672d2b00a961c356510f1cbd9e54f 107 SMART SM00530 16 69 3.0E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c22970 968b3f4aff92c6276d5c9cc33b60713f 247 Pfam PF11101 Protein of unknown function (DUF2884) 21 245 7.0E-72 T 11-10-2018 IPR021307 Protein of unknown function DUF2884 VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 Gene3D G3DSA:1.10.579.10 329 449 1.1E-53 T 11-10-2018 VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 Gene3D G3DSA:1.10.10.1710 450 516 3.2E-27 T 11-10-2018 VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 Gene3D G3DSA:1.25.40.80 132 325 6.0E-102 T 11-10-2018 VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 SUPERFAMILY SSF48173 230 499 2.09E-63 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 Gene3D G3DSA:3.40.50.620 8 231 6.0E-102 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c43290 b7f19f00ef6227b7fc8bbf4ec756b57f 516 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 7 224 2.5E-69 T 11-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein VV93_v1c21790 0109011c1d15e5a7175e171cd8753168 682 Pfam PF02120 Flagellar hook-length control protein FliK 553 636 8.7E-25 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal VV93_v1c21790 0109011c1d15e5a7175e171cd8753168 682 Gene3D G3DSA:3.30.750.140 533 646 6.0E-32 T 11-10-2018 IPR038610 FliK-like, C-terminal domain superfamily VV93_v1c38430 83d599fb12a2f80d2888b3cfb9cf6c6e 140 Pfam PF04143 Sulphur transport 3 126 1.0E-10 T 11-10-2018 IPR007272 Sulphur transport domain VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 Gene3D G3DSA:3.30.565.10 307 448 2.0E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 SUPERFAMILY SSF55874 307 443 1.23E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 445 1.5E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 Gene3D G3DSA:1.10.287.130 191 298 3.7E-7 T 11-10-2018 VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 SMART SM00387 340 447 4.6E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c13320 862496b0e130b829a1fa3ff3b6c5b950 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 390 1.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 Pfam PF03466 LysR substrate binding domain 89 290 4.7E-39 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.2E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 Gene3D G3DSA:3.40.190.290 91 291 9.2E-57 T 11-10-2018 VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 Gene3D G3DSA:1.10.10.10 3 89 3.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 SUPERFAMILY SSF46785 4 86 4.28E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c32150 e9cd9b009b0307171131d4064f92700d 300 SUPERFAMILY SSF53850 90 294 2.71E-42 T 11-10-2018 VV93_v1c10920 844cd6affb7c041ed36c38bbf9d0e421 173 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 2.4E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c10920 844cd6affb7c041ed36c38bbf9d0e421 173 SUPERFAMILY SSF54523 8 141 1.1E-13 T 11-10-2018 VV93_v1c10920 844cd6affb7c041ed36c38bbf9d0e421 173 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 2.8E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c10920 844cd6affb7c041ed36c38bbf9d0e421 173 Gene3D G3DSA:3.30.700.10 8 150 5.5E-13 T 11-10-2018 VV93_v1c10920 844cd6affb7c041ed36c38bbf9d0e421 173 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c21390 2d2cc416a4ad2bbf55744bb3d5c85a91 176 Gene3D G3DSA:3.30.1370.110 49 175 1.4E-27 T 11-10-2018 VV93_v1c21390 2d2cc416a4ad2bbf55744bb3d5c85a91 176 SMART SM00463 94 172 7.9E-16 T 11-10-2018 IPR002625 Smr domain VV93_v1c21390 2d2cc416a4ad2bbf55744bb3d5c85a91 176 SUPERFAMILY SSF160443 95 171 1.83E-11 T 11-10-2018 IPR036063 Smr domain superfamily VV93_v1c21390 2d2cc416a4ad2bbf55744bb3d5c85a91 176 Pfam PF01713 Smr domain 97 171 1.2E-17 T 11-10-2018 IPR002625 Smr domain VV93_v1c21390 2d2cc416a4ad2bbf55744bb3d5c85a91 176 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 173 40.034 T 11-10-2018 IPR022990 Uncharacterised protein family UPF0115 VV93_v1c43240 08ecea0951ad924a338b556874d7ec20 165 SUPERFAMILY SSF56524 31 164 7.32E-21 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 VV93_v1c43240 08ecea0951ad924a338b556874d7ec20 165 Pfam PF00174 Oxidoreductase molybdopterin binding domain 66 139 3.6E-6 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 VV93_v1c41480 ccf9301572e08afd12b3e79658c25aab 389 Pfam PF13729 F plasmid transfer operon, TraF, protein 48 306 1.3E-74 T 11-10-2018 IPR032811 Putative conjugal transfer protein TraF-related VV93_v1c06290 5bae558ac2cd11c8b129ae82765620ba 143 Gene3D G3DSA:2.40.10.330 72 128 1.0E-42 T 11-10-2018 VV93_v1c06290 5bae558ac2cd11c8b129ae82765620ba 143 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 139 9.6E-13 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VV93_v1c06290 5bae558ac2cd11c8b129ae82765620ba 143 Gene3D G3DSA:3.10.50.40 13 140 1.0E-42 T 11-10-2018 VV93_v1c06290 5bae558ac2cd11c8b129ae82765620ba 143 SUPERFAMILY SSF54534 4 142 9.04E-37 T 11-10-2018 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 84 104 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 144 164 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 281 300 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 336 355 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 182 204 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 220 239 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 315 333 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 39 58 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 PRINTS PR00166 Aromatic amino acid permease signature 12 35 6.2E-81 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 9 384 1.2E-131 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 Gene3D G3DSA:1.20.1740.10 1 404 9.1E-6 T 11-10-2018 VV93_v1c42390 9ed64c623f3a8490e6d911529b51d1e1 404 Pfam PF03222 Tryptophan/tyrosine permease family 3 391 4.1E-129 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VV93_v1c44190 c91617516ccec4d5251fbd1084ab67a4 391 Pfam PF01380 SIS domain 53 191 5.5E-13 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c44190 c91617516ccec4d5251fbd1084ab67a4 391 Gene3D G3DSA:3.40.50.10490 202 373 1.5E-57 T 11-10-2018 VV93_v1c44190 c91617516ccec4d5251fbd1084ab67a4 391 Gene3D G3DSA:3.40.50.10490 4 199 1.8E-55 T 11-10-2018 VV93_v1c44190 c91617516ccec4d5251fbd1084ab67a4 391 SUPERFAMILY SSF53697 20 370 4.45E-49 T 11-10-2018 VV93_v1c44190 c91617516ccec4d5251fbd1084ab67a4 391 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 379 2.3E-187 T 11-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 VV93_v1c39310 8309d38611aa7e850297ab4d754389e0 377 Pfam PF06812 ImpA, N-terminal, type VI secretion system 16 144 2.5E-30 T 11-10-2018 IPR010657 ImpA, N-terminal VV93_v1c39310 8309d38611aa7e850297ab4d754389e0 377 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 12 371 2.6E-77 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 Pfam PF07670 Nucleoside recognition 349 440 2.1E-13 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 Pfam PF07670 Nucleoside recognition 509 691 6.1E-37 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 Pfam PF07664 Ferrous iron transport protein B C terminus 452 504 9.5E-19 T 11-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 687 2.9E-177 T 11-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 Pfam PF02421 Ferrous iron transport protein B 4 161 3.0E-58 T 11-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 Gene3D G3DSA:3.40.50.300 4 190 6.9E-43 T 11-10-2018 VV93_v1c09640 b1426e12387b39a459e6ff2955274464 758 SUPERFAMILY SSF52540 4 181 7.14E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c37500 7750e93aa9f7614a981c1e94148a4980 563 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 307 2.7E-20 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c37500 7750e93aa9f7614a981c1e94148a4980 563 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 119 6.2E-39 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VV93_v1c37500 7750e93aa9f7614a981c1e94148a4980 563 Gene3D G3DSA:3.40.190.10 122 312 1.2E-36 T 11-10-2018 VV93_v1c37500 7750e93aa9f7614a981c1e94148a4980 563 SUPERFAMILY SSF53850 120 557 5.61E-57 T 11-10-2018 VV93_v1c40770 9c9467e4c9e950bf11fb7a78b20daba6 346 Pfam PF10282 Lactonase, 7-bladed beta-propeller 8 339 5.4E-97 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller VV93_v1c40770 9c9467e4c9e950bf11fb7a78b20daba6 346 Gene3D G3DSA:2.130.10.10 1 340 6.2E-86 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c40770 9c9467e4c9e950bf11fb7a78b20daba6 346 SUPERFAMILY SSF51004 61 322 5.62E-27 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily VV93_v1c33420 e3d53ffd2ba10c08b9861b1cc161b5ae 267 Pfam PF13411 MerR HTH family regulatory protein 12 79 8.4E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c33420 e3d53ffd2ba10c08b9861b1cc161b5ae 267 SUPERFAMILY SSF46955 12 105 8.7E-19 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c33420 e3d53ffd2ba10c08b9861b1cc161b5ae 267 Gene3D G3DSA:1.10.1660.10 7 80 2.2E-25 T 11-10-2018 VV93_v1c33420 e3d53ffd2ba10c08b9861b1cc161b5ae 267 SMART SM00422 12 81 2.5E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c15930 8d86b7339dd211beb5c5c61049b27894 65 PIRSF PIRSF036704 1 65 4.7E-33 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing VV93_v1c15930 8d86b7339dd211beb5c5c61049b27894 65 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 37 5.1E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VV93_v1c15930 8d86b7339dd211beb5c5c61049b27894 65 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 1 65 2.3E-28 T 11-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing VV93_v1c37120 118805eece8ae2d198209235949168c4 787 SMART SM00387 676 787 8.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c37120 118805eece8ae2d198209235949168c4 787 PIRSF PIRSF037119 1 787 0.0 T 11-10-2018 IPR017116 Signal transduction histidine kinase, PgtB VV93_v1c37120 118805eece8ae2d198209235949168c4 787 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 682 785 2.4E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c37120 118805eece8ae2d198209235949168c4 787 Gene3D G3DSA:3.30.565.10 635 787 2.2E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c37120 118805eece8ae2d198209235949168c4 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 765 6.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 736 746 6.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 771 784 6.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 732 6.7E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 SMART SM00304 346 398 0.0015 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 SUPERFAMILY SSF47384 561 633 1.57E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 SMART SM00388 565 633 4.8E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 Gene3D G3DSA:3.30.450.20 392 524 3.7E-7 T 11-10-2018 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 Pfam PF00512 His Kinase A (phospho-acceptor) domain 567 631 8.6E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c37120 118805eece8ae2d198209235949168c4 787 SUPERFAMILY SSF55874 634 785 1.09E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c37120 118805eece8ae2d198209235949168c4 787 Gene3D G3DSA:1.10.287.130 541 628 1.6E-17 T 11-10-2018 VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 237 356 1.0E-22 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 SUPERFAMILY SSF55073 243 410 3.69E-33 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 Gene3D G3DSA:3.30.70.270 229 412 2.1E-43 T 11-10-2018 VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 363 408 1.1E-5 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 341 5.0E-22 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c38220 39a0e2858cfecdd7794e80e32218d189 414 SMART SM00267 226 412 7.6E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 SUPERFAMILY SSF47616 82 208 2.42E-24 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 87 8.9E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 194 5.8E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 SUPERFAMILY SSF52833 11 110 8.42E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 Gene3D G3DSA:3.40.30.10 11 202 5.7E-78 T 11-10-2018 VV93_v1c05400 3752a24761f0f02e50a3d90906e7b6a8 211 Gene3D G3DSA:1.20.1050.10 89 193 5.7E-78 T 11-10-2018 VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 Gene3D G3DSA:3.20.20.10 51 281 1.6E-132 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 Pfam PF01168 Alanine racemase, N-terminal domain 48 251 3.5E-15 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 Gene3D G3DSA:2.40.37.20 33 421 1.6E-132 T 11-10-2018 VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 SUPERFAMILY SSF51419 48 282 1.05E-32 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 Pfam PF14031 Putative serine dehydratase domain 311 405 1.8E-13 T 11-10-2018 IPR026956 D-serine dehydratase-like domain VV93_v1c40820 e169b984676a3cd0d84a27f958ea70a5 421 SMART SM01119 311 408 3.5E-29 T 11-10-2018 IPR026956 D-serine dehydratase-like domain VV93_v1c26350 d7cbe961dd99a7ee6b0841e82db4a78c 331 Pfam PF01435 Peptidase family M48 155 330 2.4E-26 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 VV93_v1c33290 6f4c86ce07d95b560dae513fa09445a8 166 Gene3D G3DSA:3.40.630.30 1 163 1.5E-41 T 11-10-2018 VV93_v1c33290 6f4c86ce07d95b560dae513fa09445a8 166 Pfam PF00583 Acetyltransferase (GNAT) family 35 136 1.1E-15 T 11-10-2018 IPR000182 GNAT domain VV93_v1c33290 6f4c86ce07d95b560dae513fa09445a8 166 SUPERFAMILY SSF55729 3 161 3.26E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c07700 6217a8a7c23543d5e002d75ced3faa76 389 SUPERFAMILY SSF56935 46 381 2.75E-17 T 11-10-2018 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 6 388 5.6E-194 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 Gene3D G3DSA:3.40.50.1100 9 204 6.5E-183 T 11-10-2018 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 2.0E-49 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 SUPERFAMILY SSF53686 5 387 8.51E-142 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 PIRSF PIRSF001413 1 396 5.0E-168 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.65 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 VV93_v1c11350 4d9c667fff3e8accf1297f5e7cfa44e9 396 Gene3D G3DSA:3.40.50.1100 53 383 6.5E-183 T 11-10-2018 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 SUPERFAMILY SSF64158 78 308 9.02E-80 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 SUPERFAMILY SSF53649 4 509 9.16E-76 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 509 9.4E-227 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 Pfam PF01676 Metalloenzyme superfamily 5 498 1.4E-80 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 Gene3D G3DSA:3.40.1450.10 78 310 7.0E-208 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 510 49.104 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 297 3.4E-78 T 11-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 Gene3D G3DSA:3.40.720.10 6 509 7.0E-208 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c28100 009f2923e456dcd8974aa4be80d95534 510 PIRSF PIRSF001492 1 510 4.0E-202 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 VV93_v1c15400 890e75a4de994bdb2ec192e39c50c806 129 SUPERFAMILY SSF47413 1 65 1.13E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c15400 890e75a4de994bdb2ec192e39c50c806 129 SMART SM00530 6 61 5.6E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c15400 890e75a4de994bdb2ec192e39c50c806 129 Gene3D G3DSA:1.10.260.40 1 75 7.3E-20 T 11-10-2018 VV93_v1c15400 890e75a4de994bdb2ec192e39c50c806 129 Pfam PF12844 Helix-turn-helix domain 4 65 1.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c38110 890e75a4de994bdb2ec192e39c50c806 129 SUPERFAMILY SSF47413 1 65 1.13E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c38110 890e75a4de994bdb2ec192e39c50c806 129 SMART SM00530 6 61 5.6E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c38110 890e75a4de994bdb2ec192e39c50c806 129 Gene3D G3DSA:1.10.260.40 1 75 7.3E-20 T 11-10-2018 VV93_v1c38110 890e75a4de994bdb2ec192e39c50c806 129 Pfam PF12844 Helix-turn-helix domain 4 65 1.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c41030 0ab13de3437bcf5efb1d1a30d83ad94e 143 Pfam PF00583 Acetyltransferase (GNAT) family 36 117 5.8E-12 T 11-10-2018 IPR000182 GNAT domain VV93_v1c41030 0ab13de3437bcf5efb1d1a30d83ad94e 143 SUPERFAMILY SSF55729 35 139 2.53E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c41030 0ab13de3437bcf5efb1d1a30d83ad94e 143 Gene3D G3DSA:3.40.630.30 35 138 3.1E-26 T 11-10-2018 VV93_v1c26300 c3bc284eb0f99770e1d5da629bddef54 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 344 7.7E-68 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VV93_v1c26300 c3bc284eb0f99770e1d5da629bddef54 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 346 1.7E-116 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 VV93_v1c17670 c86c57ecb6ea3719b8bfa17b2f733375 294 Pfam PF00482 Type II secretion system (T2SS), protein F 127 252 6.7E-18 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c17670 c86c57ecb6ea3719b8bfa17b2f733375 294 Gene3D G3DSA:1.20.81.30 119 229 3.4E-7 T 11-10-2018 VV93_v1c14180 731850767b0d5e19d08fdcd81d561b6e 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 275 4.3E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c14180 731850767b0d5e19d08fdcd81d561b6e 280 SUPERFAMILY SSF161098 7 277 3.92E-53 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c14180 731850767b0d5e19d08fdcd81d561b6e 280 Gene3D G3DSA:1.10.3720.10 3 273 3.3E-49 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 Gene3D G3DSA:3.40.50.1000 12 187 4.8E-55 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 172 9.8E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 Gene3D G3DSA:1.10.260.80 24 75 4.8E-55 T 11-10-2018 VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 171 5.6E-19 T 11-10-2018 VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 13 165 9.6E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 VV93_v1c35290 4ee9224238b2b772e53ad3e9208ac088 203 SUPERFAMILY SSF56784 11 198 2.88E-35 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 Pfam PF00119 ATP synthase A chain 44 262 5.9E-58 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 SUPERFAMILY SSF81336 93 262 1.44E-49 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 PRINTS PR00123 ATP synthase A subunit signature 200 222 1.6E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 PRINTS PR00123 ATP synthase A subunit signature 101 117 1.6E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 PRINTS PR00123 ATP synthase A subunit signature 248 263 1.6E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 263 2.6E-45 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 Gene3D G3DSA:1.20.120.220 92 268 2.0E-66 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 ProSitePatterns PS00449 ATP synthase a subunit signature. 203 212 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c29790 a3a04a1257f441e3f14f7c50bb29c63e 270 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 268 15.216 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 VV93_v1c40800 3b7fd6497389a1c89c0c1b77baf98046 130 SUPERFAMILY SSF55298 18 126 6.6E-30 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c40800 3b7fd6497389a1c89c0c1b77baf98046 130 Gene3D G3DSA:3.30.1330.40 16 129 1.5E-31 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c40800 3b7fd6497389a1c89c0c1b77baf98046 130 Pfam PF01042 Endoribonuclease L-PSP 20 123 2.4E-22 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VV93_v1c23590 89ab09588ac3dfdab0f37cb65394eec9 291 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 124 274 1.1E-19 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain VV93_v1c23590 89ab09588ac3dfdab0f37cb65394eec9 291 SUPERFAMILY SSF52266 97 284 1.48E-41 T 11-10-2018 VV93_v1c23590 89ab09588ac3dfdab0f37cb65394eec9 291 Gene3D G3DSA:3.40.50.1110 78 288 6.3E-37 T 11-10-2018 IPR036514 SGNH hydrolase superfamily VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 SUPERFAMILY SSF64383 175 307 3.14E-48 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 Hamap MF_00509 Cell division protein ZipA [zipA]. 2 305 22.228 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 3 303 4.3E-86 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 175 302 1.9E-46 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 176 311 3.0E-77 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 Gene3D G3DSA:3.30.1400.10 173 311 3.4E-49 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 VV93_v1c09070 6909183b79557009be3c1d1eeab4be44 311 SMART SM00771 173 303 6.6E-70 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 VV93_v1c10010 77d754cbac0f41ef2f89faf4fd803748 84 Hamap MF_01217 Acyl carrier protein [acpP]. 8 82 14.069 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VV93_v1c10010 77d754cbac0f41ef2f89faf4fd803748 84 Pfam PF00550 Phosphopantetheine attachment site 11 78 2.9E-13 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c10010 77d754cbac0f41ef2f89faf4fd803748 84 SUPERFAMILY SSF47336 4 82 1.7E-19 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c10010 77d754cbac0f41ef2f89faf4fd803748 84 Gene3D G3DSA:1.10.1200.10 1 80 6.6E-19 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 Pfam PF07238 PilZ domain 134 234 1.8E-15 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 Pfam PF12945 Flagellar protein YcgR 38 127 6.3E-15 T 11-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 Gene3D G3DSA:2.30.110.10 23 136 1.4E-41 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 SUPERFAMILY SSF141371 138 247 4.45E-33 T 11-10-2018 VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 Gene3D G3DSA:2.40.10.220 137 248 4.3E-38 T 11-10-2018 VV93_v1c33270 69aab8cb4332cd2d565d5ecde9d331fe 248 SUPERFAMILY SSF141371 24 137 5.49E-35 T 11-10-2018 VV93_v1c16060 4875decca2110aec5729b4d4648b8174 232 SUPERFAMILY SSF161098 6 222 2.88E-30 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c16060 4875decca2110aec5729b4d4648b8174 232 Gene3D G3DSA:1.10.3720.10 1 229 2.2E-27 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c16060 4875decca2110aec5729b4d4648b8174 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 220 2.7E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 Gene3D G3DSA:3.90.70.10 225 355 2.6E-17 T 11-10-2018 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 802 841 1.6E-7 T 11-10-2018 IPR006530 YD repeat VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 Pfam PF03412 Peptidase C39 family 226 351 5.1E-14 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1347 1421 1.9E-21 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 Gene3D G3DSA:1.25.40.10 89 215 6.7E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 Pfam PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues 1496 1562 3.0E-11 T 11-10-2018 IPR026835 UPF0720 protein yqcG VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 Gene3D G3DSA:2.180.10.10 909 1421 5.3E-36 T 11-10-2018 VV93_v1c43960 954691b411a6d3415e2e857460f5bfb4 1566 SUPERFAMILY SSF48452 87 201 1.08E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c22360 187bc8d015991e880dbf5729d79b8990 144 Pfam PF09842 Predicted membrane protein (DUF2069) 16 118 1.1E-33 T 11-10-2018 IPR018643 Protein of unknown function DUF2069, membrane VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.1E-30 T 11-10-2018 IPR025121 GTPase HflX, N-terminal VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 PIRSF PIRSF006809 3 423 1.4E-151 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 1.9E-28 T 11-10-2018 IPR032305 GTP-binding protein, middle domain VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Gene3D G3DSA:3.40.50.11060 18 138 1.0E-36 T 11-10-2018 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.581 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 SUPERFAMILY SSF54980 365 428 3.88E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Gene3D G3DSA:3.40.50.300 197 369 2.2E-42 T 11-10-2018 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 Pfam PF01926 50S ribosome-binding GTPase 200 318 5.5E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 SUPERFAMILY SSF52540 197 371 1.46E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 1.0E-155 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 4.6E-10 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 4.6E-10 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c27980 04ae93e77955ac0ce323422e58cc7883 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 4.6E-10 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c06480 3edabd61804272e5c8d5eaba10fc939b 241 Gene3D G3DSA:1.25.40.10 28 240 1.1E-52 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c06480 3edabd61804272e5c8d5eaba10fc939b 241 SUPERFAMILY SSF48452 30 119 7.25E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c06480 3edabd61804272e5c8d5eaba10fc939b 241 Pfam PF13525 Outer membrane lipoprotein 26 233 1.0E-79 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like VV93_v1c06480 3edabd61804272e5c8d5eaba10fc939b 241 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 239 8.3E-79 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD VV93_v1c06480 3edabd61804272e5c8d5eaba10fc939b 241 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 240 37.109 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 Gene3D G3DSA:3.40.50.300 246 457 1.0E-65 T 11-10-2018 VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 Pfam PF02562 PhoH-like protein 249 453 3.9E-54 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 SUPERFAMILY SSF52540 159 438 9.81E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 Gene3D G3DSA:3.40.50.1010 3 155 5.0E-28 T 11-10-2018 VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 SUPERFAMILY SSF88723 7 161 2.75E-14 T 11-10-2018 IPR029060 PIN-like domain superfamily VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 Pfam PF13638 PIN domain 9 150 3.8E-35 T 11-10-2018 IPR002716 PIN domain VV93_v1c26490 334538b2d35eaea6c3fdffdcbd4d933d 459 SMART SM00670 7 141 4.9E-11 T 11-10-2018 IPR002716 PIN domain VV93_v1c24480 dd78b6da8a08fb932a61dbd1e633386c 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 325 7.0E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c24480 dd78b6da8a08fb932a61dbd1e633386c 328 Gene3D G3DSA:1.10.3720.10 88 327 2.2E-18 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c24480 dd78b6da8a08fb932a61dbd1e633386c 328 SUPERFAMILY SSF161098 93 324 2.88E-14 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c04830 16b6f75cf9b1274637abc693c0946fa0 343 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 7 339 1.6E-148 T 11-10-2018 IPR013399 CRISPR-associated protein Csy3 VV93_v1c04830 16b6f75cf9b1274637abc693c0946fa0 343 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 7 342 8.2E-136 T 11-10-2018 IPR013399 CRISPR-associated protein Csy3 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 602 736 9.6E-15 T 11-10-2018 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 283 422 1.6E-19 T 11-10-2018 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 SUPERFAMILY SSF49899 582 739 4.22E-19 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 Gene3D G3DSA:2.60.120.200 282 463 8.7E-27 T 11-10-2018 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 Gene3D G3DSA:2.60.120.200 595 771 2.1E-21 T 11-10-2018 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 SUPERFAMILY SSF49899 266 450 2.24E-25 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 SUPERFAMILY SSF103647 475 536 3.4E-5 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c43970 ce4011503cd692dcecd4268d07f513fc 786 SUPERFAMILY SSF103647 157 226 1.7E-6 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c14210 bf5a7f76329b952d23183d041b1640c2 386 Gene3D G3DSA:1.10.3210.10 162 378 8.2E-60 T 11-10-2018 VV93_v1c14210 bf5a7f76329b952d23183d041b1640c2 386 Pfam PF01966 HD domain 189 324 2.8E-16 T 11-10-2018 IPR006674 HD domain VV93_v1c14210 bf5a7f76329b952d23183d041b1640c2 386 Gene3D G3DSA:3.30.450.40 4 160 5.3E-7 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c14210 bf5a7f76329b952d23183d041b1640c2 386 SUPERFAMILY SSF109604 178 365 3.14E-32 T 11-10-2018 VV93_v1c14210 bf5a7f76329b952d23183d041b1640c2 386 SMART SM00471 183 334 1.4E-10 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c10070 135a2b947056f07599f58df95eff91fa 418 SUPERFAMILY SSF51905 4 380 1.7E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c10070 135a2b947056f07599f58df95eff91fa 418 Pfam PF01494 FAD binding domain 6 164 2.2E-19 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 VV93_v1c10070 135a2b947056f07599f58df95eff91fa 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.0E-7 T 11-10-2018 VV93_v1c10070 135a2b947056f07599f58df95eff91fa 418 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 3.0E-7 T 11-10-2018 VV93_v1c10070 135a2b947056f07599f58df95eff91fa 418 Gene3D G3DSA:3.50.50.60 2 417 9.0E-127 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c03880 98ebdf8a56301fbeef5e4fc912b0e101 419 Pfam PF02687 FtsX-like permease family 317 410 7.6E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c03880 98ebdf8a56301fbeef5e4fc912b0e101 419 Pfam PF12704 MacB-like periplasmic core domain 20 207 8.0E-11 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c22560 6a891d197f0dc78cb4bb609533f328ca 284 Hamap MF_01119 UPF0294 protein YafD [yafD]. 1 279 59.757 T 11-10-2018 IPR022958 Uncharacterised protein family UPF0294 VV93_v1c22560 6a891d197f0dc78cb4bb609533f328ca 284 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 67 271 1.8E-8 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c22560 6a891d197f0dc78cb4bb609533f328ca 284 SUPERFAMILY SSF56219 60 279 1.83E-24 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c22560 6a891d197f0dc78cb4bb609533f328ca 284 Gene3D G3DSA:3.60.10.10 61 283 1.0E-18 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c21620 bd7eccb2f0e8e993b44d8fcd5d86bcfd 258 Gene3D G3DSA:3.40.50.300 1 254 8.0E-67 T 11-10-2018 VV93_v1c21620 bd7eccb2f0e8e993b44d8fcd5d86bcfd 258 SUPERFAMILY SSF52540 1 252 6.69E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21620 bd7eccb2f0e8e993b44d8fcd5d86bcfd 258 Pfam PF13614 AAA domain 4 177 8.1E-50 T 11-10-2018 IPR025669 AAA domain VV93_v1c21620 bd7eccb2f0e8e993b44d8fcd5d86bcfd 258 PIRSF PIRSF009320 1 81 1.8E-13 T 11-10-2018 VV93_v1c21620 bd7eccb2f0e8e993b44d8fcd5d86bcfd 258 PIRSF PIRSF009320 96 239 1.6E-7 T 11-10-2018 VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 66 647 4.0E-115 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 163 338 3.3E-26 T 11-10-2018 IPR004477 ComEC/Rec2-related protein VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 Gene3D G3DSA:3.60.15.10 427 665 4.1E-47 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 Pfam PF03772 Competence protein 141 400 6.4E-51 T 11-10-2018 IPR004477 ComEC/Rec2-related protein VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 Pfam PF00753 Metallo-beta-lactamase superfamily 436 617 1.4E-12 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 SUPERFAMILY SSF56281 429 662 2.03E-40 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c20670 e9ca4eccf6b03b92f19dab261d97c0ca 682 SMART SM00849 438 620 4.8E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 26 393 1.5E-30 T 11-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 SUPERFAMILY SSF53474 414 658 2.92E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 Pfam PF00326 Prolyl oligopeptidase family 457 674 2.1E-60 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 Gene3D G3DSA:2.130.10.120 83 403 7.4E-149 T 11-10-2018 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 468 492 4.8E-29 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 590 605 4.8E-29 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 442 460 4.8E-29 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 496 515 4.8E-29 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 608 630 4.8E-29 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 SUPERFAMILY SSF50993 30 398 3.4E-31 T 11-10-2018 VV93_v1c33470 3b7a866f4f571ef0a0a12a79044d9a67 725 Gene3D G3DSA:3.40.50.1820 32 672 7.4E-149 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 Gene3D G3DSA:3.90.1150.10 61 444 6.2E-119 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 265 302 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 PIRSF PIRSF000521 151 452 1.8E-19 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 PIRSF PIRSF000521 8 158 6.9E-6 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 Gene3D G3DSA:3.40.640.10 89 348 6.2E-119 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 Pfam PF00202 Aminotransferase class-III 57 449 1.0E-85 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c34560 640ada6fd32c779df4d7b88632ac8173 459 SUPERFAMILY SSF53383 57 450 2.34E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 Pfam PF05175 Methyltransferase small domain 135 217 2.4E-17 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 PIRSF PIRSF037167 2 307 3.0E-148 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 Gene3D G3DSA:1.10.8.10 17 105 1.5E-5 T 11-10-2018 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 1.2E-136 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 SUPERFAMILY SSF53335 16 293 1.33E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.649 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 Gene3D G3DSA:3.40.50.150 106 279 2.1E-45 T 11-10-2018 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 299 1.7E-95 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 VV93_v1c21380 b44ea531a8946aa0a5ffebceab3bfa1a 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 SUPERFAMILY SSF46894 119 217 3.12E-26 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 SUPERFAMILY SSF52172 1 118 6.69E-36 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 SMART SM00448 1 112 1.5E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 3.1E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 SMART SM00862 145 216 3.3E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 Pfam PF00072 Response regulator receiver domain 3 113 7.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 Gene3D G3DSA:1.10.10.10 123 219 8.8E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c13330 d05c9e17513b7fb2bfe4c911c3288522 219 Gene3D G3DSA:3.40.50.2300 1 122 9.5E-37 T 11-10-2018 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 264 55.382 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 Gene3D G3DSA:1.10.8.100 200 266 3.1E-24 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 SMART SM00650 25 197 5.1E-89 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 10 263 6.2E-88 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 SUPERFAMILY SSF53335 7 264 2.39E-79 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 264 3.2E-77 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm VV93_v1c04450 dc344f333fbb5b970a06292b25b56b8e 268 Gene3D G3DSA:3.40.50.150 1 198 1.7E-65 T 11-10-2018 VV93_v1c05880 a9e3221be882cf93b5adf8370c799773 154 PIRSF PIRSF028680 1 154 2.0E-77 T 11-10-2018 IPR016895 Uncharacterised conserved protein UCP028680 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 2.7E-31 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 2.0E-209 T 11-10-2018 IPR004482 Mg chelatase-related protein VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.5E-47 T 11-10-2018 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 SMART SM00382 210 390 9.0E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 Gene3D G3DSA:3.40.50.300 170 500 2.8E-55 T 11-10-2018 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 Gene3D G3DSA:3.30.230.10 1 167 4.4E-7 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 SUPERFAMILY SSF54211 2 169 2.05E-30 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 SUPERFAMILY SSF52540 187 500 2.91E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 7.6E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 7.6E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 7.6E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 VV93_v1c29610 3f57d003f010bc6e6c22dcd57d918778 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 391 2.2E-90 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain VV93_v1c43820 3e4891b50163175b4b34d762704c240a 126 Pfam PF11777 Protein of unknown function (DUF3316) 6 119 3.4E-18 T 11-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VV93_v1c43820 3e4891b50163175b4b34d762704c240a 126 PIRSF PIRSF028299 4 126 1.7E-50 T 11-10-2018 IPR016879 Uncharacterised conserved protein UCP028299 VV93_v1c44340 cf8b314a18a1325b34c23d6ae49521c9 175 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 155 2.5E-56 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c44340 cf8b314a18a1325b34c23d6ae49521c9 175 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 160 34.893 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c44340 cf8b314a18a1325b34c23d6ae49521c9 175 SUPERFAMILY SSF55068 3 166 2.22E-70 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c44340 cf8b314a18a1325b34c23d6ae49521c9 175 Gene3D G3DSA:3.30.1060.10 1 163 4.9E-67 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c44340 cf8b314a18a1325b34c23d6ae49521c9 175 Pfam PF01625 Peptide methionine sulfoxide reductase 6 155 9.0E-61 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Gene3D G3DSA:1.10.540.10 2 127 5.0E-45 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 17 125 1.5E-35 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 SUPERFAMILY SSF56645 6 249 1.83E-81 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 224 1.4E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 131 143 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 343 362 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Gene3D G3DSA:1.20.140.10 241 385 1.0E-48 T 11-10-2018 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 SUPERFAMILY SSF47203 235 387 4.51E-48 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 384 1.6E-44 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 PIRSF PIRSF016578 135 389 8.1E-14 T 11-10-2018 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 PIRSF PIRSF016578 16 103 8.4E-4 T 11-10-2018 VV93_v1c39880 e5cdb938173a8e3458b875f2e5d64239 389 Gene3D G3DSA:2.40.110.10 128 240 1.6E-42 T 11-10-2018 VV93_v1c37060 5c559d8ad570d1089328e4353c68ac21 270 SUPERFAMILY SSF53850 31 269 2.76E-25 T 11-10-2018 VV93_v1c37060 5c559d8ad570d1089328e4353c68ac21 270 Gene3D G3DSA:3.40.190.10 36 264 8.7E-16 T 11-10-2018 VV93_v1c37060 5c559d8ad570d1089328e4353c68ac21 270 Gene3D G3DSA:3.40.190.10 115 230 8.7E-16 T 11-10-2018 VV93_v1c37060 5c559d8ad570d1089328e4353c68ac21 270 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 268 5.7E-16 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 SMART SM00028 206 239 0.64 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 SMART SM00028 240 273 420.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 SMART SM00028 172 205 21.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 SUPERFAMILY SSF48452 170 284 1.77E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 Gene3D G3DSA:1.25.40.10 29 337 7.4E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c36740 7a8ae692adabd292232e1ff7bf2c5e72 356 Pfam PF13432 Tetratricopeptide repeat 186 239 7.2E-8 T 11-10-2018 VV93_v1c20820 44289821d0f15242edde3930d2475536 116 Gene3D G3DSA:3.30.428.10 1 111 6.7E-36 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c20820 44289821d0f15242edde3930d2475536 116 Pfam PF01230 HIT domain 12 108 1.1E-28 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c20820 44289821d0f15242edde3930d2475536 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 11-10-2018 IPR019808 Histidine triad, conserved site VV93_v1c20820 44289821d0f15242edde3930d2475536 116 SUPERFAMILY SSF54197 2 113 1.86E-34 T 11-10-2018 IPR036265 HIT-like superfamily VV93_v1c20820 44289821d0f15242edde3930d2475536 116 PRINTS PR00332 Histidine triad family signature 6 22 1.1E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c20820 44289821d0f15242edde3930d2475536 116 PRINTS PR00332 Histidine triad family signature 27 45 1.1E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c20820 44289821d0f15242edde3930d2475536 116 PRINTS PR00332 Histidine triad family signature 95 105 1.1E-18 T 11-10-2018 IPR001310 Histidine triad (HIT) protein VV93_v1c40100 bccada128982bc2bffb5a1434513532d 92 Pfam PF03889 Domain of unknown function 20 57 9.1E-23 T 11-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 VV93_v1c35220 b00158fa919dd7aed2b01b9c3ce5651f 277 Pfam PF03618 Kinase/pyrophosphorylase 10 267 7.5E-72 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 VV93_v1c35220 b00158fa919dd7aed2b01b9c3ce5651f 277 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 7 276 68.602 T 11-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein VV93_v1c04320 59b3cc1ef414985a46a8756da0c4bc49 859 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 135 670 2.5E-78 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c04320 59b3cc1ef414985a46a8756da0c4bc49 859 Pfam PF11874 Domain of unknown function (DUF3394) 674 852 2.8E-68 T 11-10-2018 IPR021814 Protein of unknown function DUF3394 VV93_v1c04320 59b3cc1ef414985a46a8756da0c4bc49 859 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 32 731 1.7E-213 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ VV93_v1c39110 6cbdf855bbda8a931f3db18de974083d 454 SUPERFAMILY SSF56219 32 450 1.34E-13 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c39110 6cbdf855bbda8a931f3db18de974083d 454 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 38 445 1.8E-26 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c01080 62f2494fb8fd0261214ab078c4bac3d7 179 Gene3D G3DSA:3.40.1410.10 10 174 6.2E-41 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c01080 62f2494fb8fd0261214ab078c4bac3d7 179 Pfam PF04345 Chorismate lyase 12 178 6.1E-54 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VV93_v1c01080 62f2494fb8fd0261214ab078c4bac3d7 179 SUPERFAMILY SSF64288 7 174 1.1E-45 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VV93_v1c01080 62f2494fb8fd0261214ab078c4bac3d7 179 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 15 174 25.051 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 SMART SM00248 68 97 0.0085 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 SMART SM00248 35 64 4400.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 SMART SM00248 101 132 1900.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 Gene3D G3DSA:1.25.40.20 29 157 6.0E-22 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 Pfam PF12796 Ankyrin repeats (3 copies) 43 122 1.7E-10 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain VV93_v1c32810 be2b61b50ed0e28c6f13cc52e4aae6bb 157 SUPERFAMILY SSF48403 39 155 3.48E-23 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 7.3E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 Pfam PF00005 ABC transporter 24 187 2.2E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 SMART SM00382 32 253 4.4E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 Gene3D G3DSA:3.40.50.300 2 330 3.7E-72 T 11-10-2018 VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 SUPERFAMILY SSF52540 4 269 8.46E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12980 4b31f2f6892d0a6b6d840e29bd4adad3 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 2.0E-14 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 SUPERFAMILY SSF55035 146 261 1.03E-36 T 11-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 ProSitePatterns PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2. 356 363 - T 11-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 Pfam PF00368 Hydroxymethylglutaryl-coenzyme A reductase 52 419 4.3E-113 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 SUPERFAMILY SSF56542 26 409 3.14E-79 T 11-10-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 Gene3D G3DSA:3.90.770.10 92 406 2.9E-111 T 11-10-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 Gene3D G3DSA:3.30.70.420 146 261 2.9E-111 T 11-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 344 365 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 201 219 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 242 267 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 81 102 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 291 317 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c36260 e997fa08bf17286d6802bcdf4c53b55f 419 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 112 132 2.8E-38 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 VV93_v1c20370 01332d6f2163d9252b0a61e87a35be21 205 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 200 7.6E-35 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 VV93_v1c20370 01332d6f2163d9252b0a61e87a35be21 205 Hamap MF_00789 UPF0319 protein YccT [yccT]. 3 203 21.491 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 VV93_v1c12300 7adf7d449ec81673bac5e532d9795474 733 Pfam PF13166 AAA domain 17 718 2.0E-113 T 11-10-2018 IPR026866 Protein CR006, P-loop domain VV93_v1c12300 7adf7d449ec81673bac5e532d9795474 733 Gene3D G3DSA:3.40.50.300 3 212 6.4E-8 T 11-10-2018 VV93_v1c12300 7adf7d449ec81673bac5e532d9795474 733 Gene3D G3DSA:3.40.50.300 214 613 7.6E-9 T 11-10-2018 VV93_v1c12300 7adf7d449ec81673bac5e532d9795474 733 SUPERFAMILY SSF52540 5 583 3.29E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 Gene3D G3DSA:1.10.10.2830 117 230 4.9E-33 T 11-10-2018 VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 Pfam PF02195 ParB-like nuclease domain 42 130 2.7E-29 T 11-10-2018 IPR003115 ParB/Sulfiredoxin VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 38 214 2.2E-56 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 Gene3D G3DSA:3.90.1530.30 53 116 7.5E-28 T 11-10-2018 VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 SMART SM00470 40 130 1.1E-35 T 11-10-2018 IPR003115 ParB/Sulfiredoxin VV93_v1c29810 31949c4cc981f4daafc08fa174f62b2c 293 SUPERFAMILY SSF110849 43 174 1.36E-33 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily VV93_v1c10670 63f4112602ee6427da5435c0e82ede25 279 Pfam PF11207 Protein of unknown function (DUF2989) 23 225 1.9E-75 T 11-10-2018 IPR021372 Protein of unknown function DUF2989 VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 Gene3D G3DSA:1.10.10.60 187 290 6.8E-23 T 11-10-2018 VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 Pfam PF12852 Cupin 3 173 4.5E-36 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 SUPERFAMILY SSF46689 188 238 1.16E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 SMART SM00342 205 287 2.0E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 Pfam PF12833 Helix-turn-helix domain 211 288 1.8E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c34490 d2f8fa7e11ca6eb5d758d7413fa00b6d 290 SUPERFAMILY SSF46689 241 289 9.41E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c41930 b0b12e316a3842d57caa8d33bc6de692 193 Pfam PF13505 Outer membrane protein beta-barrel domain 9 193 3.8E-23 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c41930 b0b12e316a3842d57caa8d33bc6de692 193 SUPERFAMILY SSF56925 25 193 1.83E-26 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c41930 b0b12e316a3842d57caa8d33bc6de692 193 Gene3D G3DSA:2.40.160.20 23 193 5.1E-24 T 11-10-2018 VV93_v1c00560 4c049a121887feba039985fdd29f1171 265 SUPERFAMILY SSF51261 111 229 1.1E-16 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c00560 4c049a121887feba039985fdd29f1171 265 Gene3D G3DSA:2.70.70.10 114 231 1.6E-19 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c00560 4c049a121887feba039985fdd29f1171 265 Pfam PF01551 Peptidase family M23 135 227 4.1E-11 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c18470 4492d59ab17d31b5d8f90023342b0ac3 208 SUPERFAMILY SSF55811 42 197 2.57E-34 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c18470 4492d59ab17d31b5d8f90023342b0ac3 208 Pfam PF00293 NUDIX domain 45 162 3.6E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c18470 4492d59ab17d31b5d8f90023342b0ac3 208 Gene3D G3DSA:3.90.79.10 23 203 2.5E-48 T 11-10-2018 VV93_v1c07790 8ae81471f6997183c4d8f2ee66ebf32d 138 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 3.3E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07790 8ae81471f6997183c4d8f2ee66ebf32d 138 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 3.3E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c07790 8ae81471f6997183c4d8f2ee66ebf32d 138 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c30510 5f4efa68f85f173b92a961eb18c90907 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 53 7.4E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c30510 5f4efa68f85f173b92a961eb18c90907 197 Gene3D G3DSA:1.10.10.60 1 47 4.5E-20 T 11-10-2018 VV93_v1c30510 5f4efa68f85f173b92a961eb18c90907 197 Gene3D G3DSA:1.10.357.10 49 193 7.1E-20 T 11-10-2018 VV93_v1c30510 5f4efa68f85f173b92a961eb18c90907 197 SUPERFAMILY SSF48498 81 193 1.11E-20 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c30510 5f4efa68f85f173b92a961eb18c90907 197 SUPERFAMILY SSF46689 3 70 6.31E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c04280 c7a2999613e2ac02b8f75ef34d62e2b4 84 Gene3D G3DSA:3.30.300.90 1 84 6.8E-33 T 11-10-2018 VV93_v1c04280 c7a2999613e2ac02b8f75ef34d62e2b4 84 Pfam PF01722 BolA-like protein 20 74 4.4E-15 T 11-10-2018 IPR002634 BolA protein VV93_v1c04280 c7a2999613e2ac02b8f75ef34d62e2b4 84 SUPERFAMILY SSF82657 4 82 7.85E-29 T 11-10-2018 IPR036065 BolA-like superfamily VV93_v1c04280 c7a2999613e2ac02b8f75ef34d62e2b4 84 PIRSF PIRSF003113 2 83 1.0E-22 T 11-10-2018 IPR002634 BolA protein VV93_v1c32340 4f0880c9114b9e1eb28b5e920353e195 553 SUPERFAMILY SSF53649 309 507 1.08E-18 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c32340 4f0880c9114b9e1eb28b5e920353e195 553 Gene3D G3DSA:3.40.720.10 220 553 4.0E-83 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c32340 4f0880c9114b9e1eb28b5e920353e195 553 Pfam PF08019 Domain of unknown function (DUF1705) 63 214 1.5E-49 T 11-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 VV93_v1c32340 4f0880c9114b9e1eb28b5e920353e195 553 Pfam PF00884 Sulfatase 245 535 8.8E-43 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 SUPERFAMILY SSF51419 14 242 4.14E-42 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 Gene3D G3DSA:3.20.20.10 15 242 1.4E-142 T 11-10-2018 IPR029066 PLP-binding barrel VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 Gene3D G3DSA:2.40.37.10 7 372 1.4E-142 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 PIRSF PIRSF038941 1 372 7.4E-130 T 11-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 SUPERFAMILY SSF50621 212 358 1.12E-22 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 VV93_v1c11580 8a817b2f6fc3ae1b9403650ec18aa93b 377 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 6 370 1.1E-164 T 11-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 VV93_v1c06830 11c829743cabe6721c04844bcfb83750 258 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 4 228 1.5E-115 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related VV93_v1c06830 11c829743cabe6721c04844bcfb83750 258 Gene3D G3DSA:3.40.50.300 1 239 1.3E-100 T 11-10-2018 VV93_v1c06830 11c829743cabe6721c04844bcfb83750 258 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 3 228 4.5E-116 T 11-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 VV93_v1c06830 11c829743cabe6721c04844bcfb83750 258 SUPERFAMILY SSF52540 35 222 9.59E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c06830 11c829743cabe6721c04844bcfb83750 258 PIRSF PIRSF028756 1 258 1.1E-133 T 11-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 VV93_v1c20590 3a2d9a5891306cbb6cb84aba006776d4 644 SMART SM00763 19 380 8.1E-217 T 11-10-2018 IPR013153 PrkA AAA domain VV93_v1c20590 3a2d9a5891306cbb6cb84aba006776d4 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 4.5E-73 T 11-10-2018 IPR010650 PrkA C-terminal domain VV93_v1c20590 3a2d9a5891306cbb6cb84aba006776d4 644 Pfam PF08298 PrkA AAA domain 19 380 4.2E-175 T 11-10-2018 IPR013153 PrkA AAA domain VV93_v1c20590 3a2d9a5891306cbb6cb84aba006776d4 644 PIRSF PIRSF000549 1 644 8.9E-288 T 11-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 VV93_v1c20590 3a2d9a5891306cbb6cb84aba006776d4 644 SUPERFAMILY SSF52540 73 368 6.12E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 39 211 6.2E-68 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 15 36 8.4E-7 T 11-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 PIRSF PIRSF015617 16 211 1.8E-64 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 SUPERFAMILY SSF52540 22 211 1.74E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 42 211 1.1E-57 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 VV93_v1c11810 d23f0ac4f708fb0bc854ff5eb63309f4 211 Gene3D G3DSA:3.40.50.300 21 211 2.4E-69 T 11-10-2018 VV93_v1c28480 81c8d90c63af32f3c4661d09128f7afa 396 Gene3D G3DSA:1.20.1250.20 195 387 7.2E-31 T 11-10-2018 VV93_v1c28480 81c8d90c63af32f3c4661d09128f7afa 396 Pfam PF12832 MFS_1 like family 13 361 1.1E-40 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain VV93_v1c28480 81c8d90c63af32f3c4661d09128f7afa 396 Gene3D G3DSA:1.20.1250.20 2 182 2.1E-16 T 11-10-2018 VV93_v1c28480 81c8d90c63af32f3c4661d09128f7afa 396 SUPERFAMILY SSF103473 8 373 4.32E-35 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c28480 81c8d90c63af32f3c4661d09128f7afa 396 PIRSF PIRSF004925 2 389 1.2E-103 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 227 315 6.8E-35 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 316 8.9E-145 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 Gene3D G3DSA:3.40.47.10 1 316 1.8E-128 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 SUPERFAMILY SSF53901 3 316 9.29E-73 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 73.317 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c11900 2f04465a1f13f72f2d36ed7cf41d56d9 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 4.1E-32 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 VV93_v1c09990 7fa75599c4d0816df069464721da0f18 455 Gene3D G3DSA:3.40.50.12780 15 331 3.6E-23 T 11-10-2018 VV93_v1c09990 7fa75599c4d0816df069464721da0f18 455 Pfam PF00501 AMP-binding enzyme 22 311 1.4E-15 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c09990 7fa75599c4d0816df069464721da0f18 455 Gene3D G3DSA:3.30.300.30 346 452 1.9E-13 T 11-10-2018 VV93_v1c09990 7fa75599c4d0816df069464721da0f18 455 SUPERFAMILY SSF56801 30 454 2.75E-52 T 11-10-2018 VV93_v1c27900 dd134f262effb366c06eff2b0768f628 468 SUPERFAMILY SSF51338 28 454 3.82E-34 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c27900 dd134f262effb366c06eff2b0768f628 468 SUPERFAMILY SSF51556 85 383 2.68E-82 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c27900 dd134f262effb366c06eff2b0768f628 468 Gene3D G3DSA:3.20.20.140 86 375 1.0E-144 T 11-10-2018 VV93_v1c27900 dd134f262effb366c06eff2b0768f628 468 Pfam PF01979 Amidohydrolase family 82 430 8.8E-68 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c27900 dd134f262effb366c06eff2b0768f628 468 Gene3D G3DSA:2.30.40.10 36 449 1.0E-144 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c14970 d5e1bf6f2fbf5430bcb0c5e417e4f939 453 Pfam PF04932 O-Antigen ligase 240 376 1.1E-18 T 11-10-2018 IPR007016 O-antigen ligase-related VV93_v1c36790 33170eff822ff31fc02353aafbfe07cf 495 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 487 2.6E-109 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 VV93_v1c36790 33170eff822ff31fc02353aafbfe07cf 495 Pfam PF07690 Major Facilitator Superfamily 17 408 3.3E-56 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c36790 33170eff822ff31fc02353aafbfe07cf 495 SUPERFAMILY SSF103473 10 489 3.01E-61 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c36790 33170eff822ff31fc02353aafbfe07cf 495 Gene3D G3DSA:1.20.1250.20 258 442 1.4E-14 T 11-10-2018 VV93_v1c36790 33170eff822ff31fc02353aafbfe07cf 495 Gene3D G3DSA:1.20.1720.10 14 207 2.4E-46 T 11-10-2018 VV93_v1c42860 895652e6ef748da6d988153aaea29e22 249 Pfam PF07670 Nucleoside recognition 85 179 2.4E-10 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 Gene3D G3DSA:1.20.1250.20 3 219 1.6E-67 T 11-10-2018 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 153 165 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 224 438 8.7E-47 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 215 2.2E-58 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 Gene3D G3DSA:1.20.1250.20 220 455 6.9E-60 T 11-10-2018 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 SUPERFAMILY SSF103473 8 436 2.49E-41 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 Pfam PF00854 POT family 228 405 4.9E-32 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VV93_v1c09290 d668fa1649cc971ad5e55c01d2c6bf82 462 Pfam PF00854 POT family 85 197 2.1E-28 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 VV93_v1c20920 d4b187d9066be78550b8e015e575be66 526 SUPERFAMILY SSF46894 6 103 1.28E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c20920 d4b187d9066be78550b8e015e575be66 526 Gene3D G3DSA:1.10.10.10 5 105 9.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20920 d4b187d9066be78550b8e015e575be66 526 SMART SM00862 24 100 1.2E-13 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c20920 d4b187d9066be78550b8e015e575be66 526 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 100 1.1E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c20920 d4b187d9066be78550b8e015e575be66 526 Gene3D G3DSA:1.25.40.10 357 518 5.4E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14730 89299abc803a25150465c3bd8895b0a3 395 Pfam PF00196 Bacterial regulatory proteins, luxR family 333 384 2.1E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c14730 89299abc803a25150465c3bd8895b0a3 395 SUPERFAMILY SSF46894 323 387 3.37E-13 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c14730 89299abc803a25150465c3bd8895b0a3 395 Gene3D G3DSA:1.10.10.10 313 390 3.9E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c14730 89299abc803a25150465c3bd8895b0a3 395 SMART SM00421 330 387 6.3E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 589 1.2E-43 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Gene3D G3DSA:3.30.450.20 62 173 5.7E-70 T 11-10-2018 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 SUPERFAMILY SSF103190 56 184 1.7E-17 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Pfam PF00672 HAMP domain 292 342 1.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Gene3D G3DSA:3.30.450.20 49 266 5.7E-70 T 11-10-2018 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Gene3D G3DSA:1.10.287.950 292 623 1.7E-70 T 11-10-2018 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 SMART SM00304 292 346 9.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 SMART SM00283 361 622 9.4E-78 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 Pfam PF02743 Cache domain 32 254 8.7E-29 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c34200 93e603ef955eec1f1f2012ed87db0801 623 SUPERFAMILY SSF58104 314 621 4.97E-76 T 11-10-2018 VV93_v1c16100 8ec3a683172c0f61181467e1c9146a34 88 Pfam PF11173 Protein of unknown function (DUF2960) 1 77 1.2E-33 T 11-10-2018 IPR021343 Protein of unknown function DUF2960 VV93_v1c10150 179360abc9098c747ef502cc50807d66 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 278 2.3E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c10150 179360abc9098c747ef502cc50807d66 285 SUPERFAMILY SSF161098 8 285 2.9E-65 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c10150 179360abc9098c747ef502cc50807d66 285 Gene3D G3DSA:1.10.3720.10 1 276 8.4E-54 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c02860 73a66564bf1e908de5829db1fb37483f 353 Gene3D G3DSA:3.40.50.2000 162 347 4.3E-42 T 11-10-2018 VV93_v1c02860 73a66564bf1e908de5829db1fb37483f 353 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 303 1.1E-60 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VV93_v1c02860 73a66564bf1e908de5829db1fb37483f 353 SUPERFAMILY SSF53756 10 342 4.87E-85 T 11-10-2018 VV93_v1c02860 73a66564bf1e908de5829db1fb37483f 353 Gene3D G3DSA:3.40.50.2000 4 156 7.3E-25 T 11-10-2018 VV93_v1c11740 838838c1d1bb57d76686ea6ccf3b8753 173 Gene3D G3DSA:3.40.30.10 27 173 2.5E-30 T 11-10-2018 VV93_v1c11740 838838c1d1bb57d76686ea6ccf3b8753 173 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 36 169 3.4E-41 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 VV93_v1c11740 838838c1d1bb57d76686ea6ccf3b8753 173 SUPERFAMILY SSF52833 43 169 7.83E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c11740 838838c1d1bb57d76686ea6ccf3b8753 173 Pfam PF08534 Redoxin 53 160 2.0E-10 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VV93_v1c11420 c8be55b5c1eed7ac9113348044d6b7a1 206 Pfam PF01300 Telomere recombination 23 198 1.6E-45 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c11420 c8be55b5c1eed7ac9113348044d6b7a1 206 SUPERFAMILY SSF55821 1 203 5.49E-64 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VV93_v1c11420 c8be55b5c1eed7ac9113348044d6b7a1 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 1.0E-70 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 VV93_v1c11420 c8be55b5c1eed7ac9113348044d6b7a1 206 Gene3D G3DSA:3.90.870.10 1 205 1.1E-67 T 11-10-2018 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 Pfam PF02599 Global regulator protein family 1 52 1.4E-26 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 Gene3D G3DSA:3.30.70.1680 1 59 9.0E-30 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 SUPERFAMILY SSF117130 1 54 4.32E-21 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 1.8E-29 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 61 17.001 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VV93_v1c25120 984597e5e15a9a19dbde2d45e7c34b49 63 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 VV93_v1c38340 4b5d5a17063402248eaedb99493751ea 205 Pfam PF05618 Putative ATP-dependant zinc protease 68 202 7.4E-43 T 11-10-2018 VV93_v1c38340 4b5d5a17063402248eaedb99493751ea 205 SUPERFAMILY SSF50630 68 199 2.67E-40 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c38340 4b5d5a17063402248eaedb99493751ea 205 Gene3D G3DSA:2.40.70.10 65 192 3.3E-39 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 Gene3D G3DSA:3.20.20.70 1 209 5.6E-76 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 SUPERFAMILY SSF51569 4 208 2.2E-67 T 11-10-2018 VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 Pfam PF01081 KDPG and KHG aldolase 4 198 1.2E-78 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c44660 ee184c29e6f2a9a67fbbaa23af733a1e 209 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 5 206 5.8E-83 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 VV93_v1c20610 c5428f5e6e04946f077fccfc3ae4cf6b 510 Pfam PF04293 SpoVR like protein 17 447 5.5E-178 T 11-10-2018 IPR007390 Sporulation stage V, protein R VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 8.1E-28 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 8.1E-28 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 8.1E-28 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 8.1E-28 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 SUPERFAMILY SSF52540 4 286 8.65E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 2.0E-70 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 VV93_v1c27770 96844abbb627fcde05e024c8cf5ff061 289 Gene3D G3DSA:3.40.50.300 1 289 3.9E-112 T 11-10-2018 VV93_v1c07290 8c50878dcf04bafe9dbb3268ee8fd8a2 637 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 50 503 3.5E-145 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VV93_v1c07290 8c50878dcf04bafe9dbb3268ee8fd8a2 637 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 502 1.8E-156 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 VV93_v1c07290 8c50878dcf04bafe9dbb3268ee8fd8a2 637 ProSitePatterns PS01303 BCCT family of transporters signature. 321 330 - T 11-10-2018 IPR018093 BCCT transporter, conserved site VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 Gene3D G3DSA:3.30.70.270 346 514 4.6E-47 T 11-10-2018 VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 Pfam PF03924 CHASE domain 85 274 1.2E-28 T 11-10-2018 IPR006189 CHASE domain VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 SMART SM01079 80 276 8.4E-37 T 11-10-2018 IPR006189 CHASE domain VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 355 513 3.4E-34 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 Pfam PF00990 Diguanylate cyclase, GGDEF domain 360 509 6.6E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 SUPERFAMILY SSF55073 364 513 2.04E-38 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 Gene3D G3DSA:3.30.450.350 85 300 3.3E-10 T 11-10-2018 VV93_v1c17840 1f1f9fc7acfd238893c682208c447339 515 SMART SM00267 348 514 2.9E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34460 b89acdf7de3956db049c5d2e2c2bddcc 228 Pfam PF13280 WYL domain 140 225 2.5E-18 T 11-10-2018 IPR026881 WYL domain VV93_v1c34460 b89acdf7de3956db049c5d2e2c2bddcc 228 Pfam PF08279 HTH domain 6 59 6.3E-17 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 VV93_v1c34460 b89acdf7de3956db049c5d2e2c2bddcc 228 Gene3D G3DSA:1.10.10.10 1 64 1.8E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c34460 b89acdf7de3956db049c5d2e2c2bddcc 228 SUPERFAMILY SSF46785 1 61 2.18E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c40020 c02ebe596916ace262ac5d17337cfcaf 86 Pfam PF11216 Protein of unknown function (DUF3012) 55 86 1.0E-18 T 11-10-2018 IPR021379 Protein of unknown function DUF3012 VV93_v1c40020 c02ebe596916ace262ac5d17337cfcaf 86 Pfam PF11216 Protein of unknown function (DUF3012) 20 51 2.7E-18 T 11-10-2018 IPR021379 Protein of unknown function DUF3012 VV93_v1c39320 3a5e8ef6db22afdc274c6239987c81ee 277 Gene3D G3DSA:3.60.40.10 10 254 2.2E-59 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c39320 3a5e8ef6db22afdc274c6239987c81ee 277 SUPERFAMILY SSF81606 21 250 1.44E-60 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c39320 3a5e8ef6db22afdc274c6239987c81ee 277 SMART SM00332 10 248 8.8E-17 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c39320 3a5e8ef6db22afdc274c6239987c81ee 277 SMART SM00331 24 250 1.4E-30 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 VV93_v1c39320 3a5e8ef6db22afdc274c6239987c81ee 277 Pfam PF13672 Protein phosphatase 2C 33 219 1.7E-16 T 11-10-2018 VV93_v1c16420 86324bccdd25be72c8a80346a4965f69 135 SUPERFAMILY SSF51316 2 134 1.26E-32 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c16420 86324bccdd25be72c8a80346a4965f69 135 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 115 4.0E-19 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VV93_v1c16420 86324bccdd25be72c8a80346a4965f69 135 Gene3D G3DSA:2.170.150.70 5 122 2.1E-13 T 11-10-2018 VV93_v1c28670 225876598167280d0e4c6eab3062d158 196 Pfam PF04222 Protein of unknown function (DUF416) 6 193 1.2E-74 T 11-10-2018 IPR007338 Protein of unknown function DUF416 VV93_v1c28670 225876598167280d0e4c6eab3062d158 196 Gene3D G3DSA:1.20.1590.10 3 195 2.5E-64 T 11-10-2018 IPR023381 YP001051499.1-like domain superfamily VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 SUPERFAMILY SSF46689 246 290 7.17E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 247 289 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 Gene3D G3DSA:1.10.10.60 189 292 1.6E-26 T 11-10-2018 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 Pfam PF12833 Helix-turn-helix domain 216 290 1.4E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 SUPERFAMILY SSF46689 193 244 2.33E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 SMART SM00342 210 292 3.9E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c37150 4aac7877544623649b1fdc08384fd58b 292 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 181 2.5E-33 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal VV93_v1c14120 a0c6a147c8aedb49cc495ce262a40507 388 SUPERFAMILY SSF55073 233 387 1.49E-43 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c14120 a0c6a147c8aedb49cc495ce262a40507 388 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 224 387 9.0E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c14120 a0c6a147c8aedb49cc495ce262a40507 388 Gene3D G3DSA:3.30.70.270 218 387 2.5E-50 T 11-10-2018 VV93_v1c14120 a0c6a147c8aedb49cc495ce262a40507 388 SMART SM00267 217 387 1.6E-54 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c14120 a0c6a147c8aedb49cc495ce262a40507 388 Pfam PF00990 Diguanylate cyclase, GGDEF domain 230 383 3.2E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 SUPERFAMILY SSF55073 254 414 2.22E-38 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 Gene3D G3DSA:1.20.1480.50 140 235 3.8E-8 T 11-10-2018 VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 248 411 8.3E-35 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 Gene3D G3DSA:3.30.70.270 245 422 7.4E-45 T 11-10-2018 VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 Pfam PF00990 Diguanylate cyclase, GGDEF domain 249 408 8.3E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c25330 4fc3b47a01df3dcaa19e2da76346d70e 423 SMART SM00267 234 413 9.2E-38 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13230 e486d08dab72065f9d7be5931cc39c98 566 SUPERFAMILY SSF161098 5 274 3.79E-21 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c13230 e486d08dab72065f9d7be5931cc39c98 566 SUPERFAMILY SSF161098 298 537 4.8E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c13230 e486d08dab72065f9d7be5931cc39c98 566 Gene3D G3DSA:1.10.3720.10 2 279 1.8E-16 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c13230 e486d08dab72065f9d7be5931cc39c98 566 Gene3D G3DSA:1.10.3720.10 297 546 6.5E-16 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 PIRSF PIRSF039085 24 277 5.0E-118 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 SUPERFAMILY SSF52540 28 272 1.22E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 SMART SM00382 52 250 1.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 Pfam PF00005 ABC transporter 43 202 1.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 Gene3D G3DSA:3.40.50.300 25 276 9.6E-74 T 11-10-2018 VV93_v1c20490 08bbe60b69cee79fe5ebe16613709918 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c00540 dcf704bfd76efd875ee748f2d09b6dab 458 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 14 458 2.0E-106 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VV93_v1c00540 dcf704bfd76efd875ee748f2d09b6dab 458 PIRSF PIRSF002746 9 458 2.4E-145 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VV93_v1c00540 dcf704bfd76efd875ee748f2d09b6dab 458 Pfam PF02447 GntP family permease 13 457 2.1E-118 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 Gene3D G3DSA:3.40.190.10 94 290 1.9E-39 T 11-10-2018 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 SUPERFAMILY SSF46785 4 86 2.72E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 Gene3D G3DSA:3.40.190.10 169 267 1.9E-39 T 11-10-2018 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 SUPERFAMILY SSF53850 95 294 3.26E-33 T 11-10-2018 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 Pfam PF03466 LysR substrate binding domain 99 294 1.5E-19 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c42710 2ea5b8237d9b9b4ef4277920e30d2c8e 298 Gene3D G3DSA:1.10.10.10 2 88 6.2E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c11240 4717e3accee23ba3c9513c9d09c735ae 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 300 1.9E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c11240 4717e3accee23ba3c9513c9d09c735ae 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 71 8.9E-15 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VV93_v1c11240 4717e3accee23ba3c9513c9d09c735ae 302 Gene3D G3DSA:1.10.3720.10 98 298 2.2E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c11240 4717e3accee23ba3c9513c9d09c735ae 302 SUPERFAMILY SSF161098 99 283 8.76E-27 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c41410 a49b0e7891f073743147352de56c95e3 219 Gene3D G3DSA:2.30.30.40 60 130 1.2E-5 T 11-10-2018 VV93_v1c41410 a49b0e7891f073743147352de56c95e3 219 Pfam PF08239 Bacterial SH3 domain 70 120 1.6E-6 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type VV93_v1c19520 23b0e712b4468736977e8b6db58a394c 258 Gene3D G3DSA:3.20.20.150 1 258 1.4E-80 T 11-10-2018 VV93_v1c19520 23b0e712b4468736977e8b6db58a394c 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 1.0E-35 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain VV93_v1c19520 23b0e712b4468736977e8b6db58a394c 258 PIRSF PIRSF006241 1 258 4.0E-99 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like VV93_v1c19520 23b0e712b4468736977e8b6db58a394c 258 SUPERFAMILY SSF51658 1 258 1.24E-84 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily VV93_v1c28050 3dfe408024f90d9f33f170f778278b6d 181 SUPERFAMILY SSF53098 1 180 1.04E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c28050 3dfe408024f90d9f33f170f778278b6d 181 Pfam PF00929 Exonuclease 9 170 2.0E-36 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c28050 3dfe408024f90d9f33f170f778278b6d 181 Gene3D G3DSA:3.30.420.10 1 181 3.1E-73 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c28050 3dfe408024f90d9f33f170f778278b6d 181 SMART SM00479 7 180 6.6E-22 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c28050 3dfe408024f90d9f33f170f778278b6d 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 43.353 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 VV93_v1c42970 d1d3b606f50ff912cb3c714729624c55 309 SUPERFAMILY SSF53613 6 301 5.14E-72 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c42970 d1d3b606f50ff912cb3c714729624c55 309 Gene3D G3DSA:3.40.1190.20 3 308 3.1E-78 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c42970 d1d3b606f50ff912cb3c714729624c55 309 Pfam PF00294 pfkB family carbohydrate kinase 6 304 2.1E-58 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c42970 d1d3b606f50ff912cb3c714729624c55 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 257 270 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 VV93_v1c45370 3fa85b0edaec101fcd20ed907d21716a 662 Pfam PF13245 AAA domain 183 350 4.1E-9 T 11-10-2018 VV93_v1c45370 3fa85b0edaec101fcd20ed907d21716a 662 Gene3D G3DSA:3.40.50.300 163 370 2.3E-21 T 11-10-2018 VV93_v1c45370 3fa85b0edaec101fcd20ed907d21716a 662 Gene3D G3DSA:3.40.50.300 411 616 7.1E-7 T 11-10-2018 VV93_v1c45370 3fa85b0edaec101fcd20ed907d21716a 662 Pfam PF13538 UvrD-like helicase C-terminal domain 512 558 1.8E-8 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain VV93_v1c45370 3fa85b0edaec101fcd20ed907d21716a 662 SUPERFAMILY SSF52540 164 538 1.22E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 2.4E-173 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 Pfam PF10150 Ribonuclease E/G family 124 393 2.6E-104 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 Gene3D G3DSA:3.40.1260.20 403 488 3.2E-6 T 11-10-2018 VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 SUPERFAMILY SSF50249 39 128 1.35E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 SMART SM00316 37 122 5.8E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 Pfam PF00575 S1 RNA binding domain 38 109 5.7E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 VV93_v1c26530 7ccd05c382c95ed438f1ed12e6df2556 489 Gene3D G3DSA:2.40.50.140 31 127 6.5E-32 T 11-10-2018 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 201 384 1.1E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 254 281 2.6E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 2.6E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 68 88 2.6E-22 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 SMART SM00283 156 417 1.1E-67 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 Gene3D G3DSA:1.10.287.950 89 418 1.4E-68 T 11-10-2018 VV93_v1c05200 631cb01b8e7c2cc7f0f20664f1565dc0 418 SUPERFAMILY SSF58104 109 418 9.42E-76 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 Gene3D G3DSA:1.10.3860.10 1 421 9.5E-112 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 Pfam PF00375 Sodium:dicarboxylate symporter family 6 404 3.4E-114 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 SUPERFAMILY SSF118215 5 406 1.15E-103 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 195 214 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 332 351 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 297 323 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 8.3E-37 T 11-10-2018 VV93_v1c07680 7db9a315e2d5f63be1136a9408005e28 426 PRINTS PR00173 Glutamate-aspartate symporter signature 359 379 8.3E-37 T 11-10-2018 VV93_v1c36670 d2543103341ec2d770b26b3ff11a0e33 362 SUPERFAMILY SSF53300 103 300 7.27E-36 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c36670 d2543103341ec2d770b26b3ff11a0e33 362 Pfam PF00092 von Willebrand factor type A domain 107 297 4.5E-26 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c36670 d2543103341ec2d770b26b3ff11a0e33 362 Gene3D G3DSA:3.40.50.410 105 304 7.5E-50 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c36670 d2543103341ec2d770b26b3ff11a0e33 362 SMART SM00327 105 304 1.2E-24 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c44180 52aed11b5bad33c00f83cac9290500f1 157 SUPERFAMILY SSF52728 3 156 9.68E-52 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 VV93_v1c44180 52aed11b5bad33c00f83cac9290500f1 157 Gene3D G3DSA:3.40.35.10 1 155 7.6E-56 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 VV93_v1c44180 52aed11b5bad33c00f83cac9290500f1 157 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 151 6.1E-68 T 11-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 VV93_v1c44180 52aed11b5bad33c00f83cac9290500f1 157 Pfam PF03830 PTS system sorbose subfamily IIB component 4 149 4.4E-51 T 11-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 VV93_v1c25870 86f0235c8f18130aec1ed6b9a585fdd0 208 SMART SM00478 52 201 2.7E-5 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c25870 86f0235c8f18130aec1ed6b9a585fdd0 208 Gene3D G3DSA:1.10.340.30 40 153 9.4E-42 T 11-10-2018 VV93_v1c25870 86f0235c8f18130aec1ed6b9a585fdd0 208 Gene3D G3DSA:1.10.1670.40 20 199 9.4E-42 T 11-10-2018 VV93_v1c25870 86f0235c8f18130aec1ed6b9a585fdd0 208 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 50 172 7.0E-5 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 VV93_v1c25870 86f0235c8f18130aec1ed6b9a585fdd0 208 SUPERFAMILY SSF48150 34 201 9.94E-31 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c18870 ed163dd4ac6c0ff1df808dfa900938d2 172 Pfam PF02600 Disulfide bond formation protein DsbB 14 162 1.4E-43 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 VV93_v1c18870 ed163dd4ac6c0ff1df808dfa900938d2 172 SUPERFAMILY SSF158442 17 163 8.11E-44 T 11-10-2018 IPR023380 DsbB-like superfamily VV93_v1c18870 ed163dd4ac6c0ff1df808dfa900938d2 172 Gene3D G3DSA:1.20.1550.10 3 172 7.5E-59 T 11-10-2018 IPR023380 DsbB-like superfamily VV93_v1c18870 ed163dd4ac6c0ff1df808dfa900938d2 172 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 9 170 21.991 T 11-10-2018 IPR022920 Disulphide bond formation protein DsbB VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.743 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 Pfam PF01678 Diaminopimelate epimerase 154 269 1.4E-31 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 Pfam PF01678 Diaminopimelate epimerase 5 125 9.7E-33 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 Gene3D G3DSA:3.10.310.10 117 263 4.8E-107 T 11-10-2018 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 Gene3D G3DSA:3.10.310.10 5 272 4.8E-107 T 11-10-2018 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.0E-101 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 VV93_v1c00770 53dc64b050e1f907dedfda4d55638e89 276 SUPERFAMILY SSF54506 2 274 4.29E-53 T 11-10-2018 VV93_v1c38540 d534da7bba4cf9ff3da1e6be0b593bed 132 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 13 101 2.0E-48 T 11-10-2018 IPR020483 Uncharacterised protein family YgbA VV93_v1c38540 d534da7bba4cf9ff3da1e6be0b593bed 132 Pfam PF11756 Nitrous oxide-stimulated promoter 10 111 9.3E-46 T 11-10-2018 IPR020483 Uncharacterised protein family YgbA VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 Gene3D G3DSA:3.30.1330.60 63 185 1.3E-27 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 SUPERFAMILY SSF103088 55 184 2.09E-29 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 PRINTS PR01021 OMPA domain signature 131 147 1.4E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 PRINTS PR01021 OMPA domain signature 86 108 1.4E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 PRINTS PR01021 OMPA domain signature 116 131 1.4E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c14500 666277f32edc96ac508f19ca8521ed2b 208 Pfam PF00691 OmpA family 85 180 2.1E-17 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c31960 735753ab26211e589f2fb910e1574182 250 Pfam PF04973 Nicotinamide mononucleotide transporter 25 228 1.7E-55 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 VV93_v1c31960 735753ab26211e589f2fb910e1574182 250 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 25 231 1.6E-57 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 Gene3D G3DSA:3.40.190.290 94 286 4.0E-14 T 11-10-2018 VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 SUPERFAMILY SSF46785 4 81 7.97E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 Pfam PF03466 LysR substrate binding domain 94 281 5.2E-13 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 Gene3D G3DSA:1.10.10.10 1 85 5.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 SUPERFAMILY SSF53850 94 288 6.92E-16 T 11-10-2018 VV93_v1c43000 6c8b027059d85676fe6979be3444922d 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.9E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c25850 23fc04f7558d229255ca97708480fa77 200 Gene3D G3DSA:3.90.950.10 1 199 9.7E-82 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c25850 23fc04f7558d229255ca97708480fa77 200 Pfam PF01725 Ham1 family 4 191 5.4E-57 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 VV93_v1c25850 23fc04f7558d229255ca97708480fa77 200 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 3.1E-64 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 VV93_v1c25850 23fc04f7558d229255ca97708480fa77 200 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 50.203 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 VV93_v1c25850 23fc04f7558d229255ca97708480fa77 200 SUPERFAMILY SSF52972 1 196 6.02E-73 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c42280 5a32cbc9f3256c6f21785daedf3ad0bc 685 SUPERFAMILY SSF56935 48 685 1.25E-93 T 11-10-2018 VV93_v1c42280 5a32cbc9f3256c6f21785daedf3ad0bc 685 Pfam PF00593 TonB dependent receptor 296 683 3.4E-34 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel VV93_v1c42280 5a32cbc9f3256c6f21785daedf3ad0bc 685 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 179 3.4E-12 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c42280 5a32cbc9f3256c6f21785daedf3ad0bc 685 Gene3D G3DSA:2.40.170.20 57 685 1.4E-92 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c12690 7d3c579a29077161e6f610ff8b522505 257 SUPERFAMILY SSF51366 1 256 9.42E-75 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 VV93_v1c12690 7d3c579a29077161e6f610ff8b522505 257 Gene3D G3DSA:3.20.20.70 1 257 1.4E-95 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c12690 7d3c579a29077161e6f610ff8b522505 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 8.9E-115 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 VV93_v1c12690 7d3c579a29077161e6f610ff8b522505 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 45.019 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 VV93_v1c12690 7d3c579a29077161e6f610ff8b522505 257 Pfam PF00977 Histidine biosynthesis protein 5 239 2.1E-79 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 VV93_v1c25070 2be3cd98c4d5de0b7595727054f0e0ea 153 Pfam PF09335 SNARE associated Golgi protein 54 148 6.1E-10 T 11-10-2018 IPR032816 SNARE associated Golgi protein VV93_v1c42020 097660feda5e947335e7030c0823409c 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 241 6.5E-80 T 11-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 VV93_v1c42020 097660feda5e947335e7030c0823409c 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site VV93_v1c42020 097660feda5e947335e7030c0823409c 243 Gene3D G3DSA:3.40.190.10 109 201 5.3E-74 T 11-10-2018 VV93_v1c42020 097660feda5e947335e7030c0823409c 243 SMART SM00062 22 243 6.9E-72 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42020 097660feda5e947335e7030c0823409c 243 Gene3D G3DSA:3.40.190.10 26 240 5.3E-74 T 11-10-2018 VV93_v1c42020 097660feda5e947335e7030c0823409c 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 243 1.1E-63 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42020 097660feda5e947335e7030c0823409c 243 SUPERFAMILY SSF53850 1 242 6.29E-66 T 11-10-2018 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 SUPERFAMILY SSF56047 2 129 4.97E-44 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 Gene3D G3DSA:3.30.1490.10 73 130 1.2E-24 T 11-10-2018 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.189 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 Gene3D G3DSA:3.30.1370.30 2 72 8.9E-27 T 11-10-2018 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 Pfam PF00410 Ribosomal protein S8 5 129 7.4E-47 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03600 a7e1c65688b12c11eba96fb883cdc2dc 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c36540 77659c812743aa6ea46717c41947d997 275 Pfam PF12849 PBP superfamily domain 22 253 4.5E-36 T 11-10-2018 IPR024370 PBP domain VV93_v1c36540 77659c812743aa6ea46717c41947d997 275 SUPERFAMILY SSF53850 24 271 1.92E-64 T 11-10-2018 VV93_v1c36540 77659c812743aa6ea46717c41947d997 275 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 21 268 8.2E-66 T 11-10-2018 IPR011862 Phosphate binding protein GO:0042301 VV93_v1c36540 77659c812743aa6ea46717c41947d997 275 Gene3D G3DSA:3.40.190.10 26 267 6.6E-79 T 11-10-2018 VV93_v1c36540 77659c812743aa6ea46717c41947d997 275 Gene3D G3DSA:3.40.190.10 97 231 6.6E-79 T 11-10-2018 VV93_v1c15540 ea54efc96f97ca930c782e5d1e3c88bf 457 Pfam PF05707 Zonular occludens toxin (Zot) 2 256 6.9E-48 T 11-10-2018 IPR008900 Zona occludens toxin VV93_v1c37810 ea54efc96f97ca930c782e5d1e3c88bf 457 Pfam PF05707 Zonular occludens toxin (Zot) 2 256 6.9E-48 T 11-10-2018 IPR008900 Zona occludens toxin VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 SUPERFAMILY SSF56349 95 376 5.89E-45 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 Gene3D G3DSA:1.10.150.130 87 203 3.5E-18 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 Gene3D G3DSA:1.10.443.10 204 379 8.2E-29 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 Pfam PF17293 Arm DNA-binding domain 3 81 2.1E-6 T 11-10-2018 IPR035386 Arm, DNA-binding domain VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 Pfam PF13102 Phage integrase SAM-like domain 94 194 3.1E-23 T 11-10-2018 IPR025269 Phage integrase SAM-like domain VV93_v1c30040 e6784f52f08eb580830df2b493ac6c6a 392 Pfam PF00589 Phage integrase family 208 366 3.1E-19 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c37190 087c6b8e88d0536b8f19ebe5f8061c32 434 Pfam PF00294 pfkB family carbohydrate kinase 139 294 2.1E-11 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c37190 087c6b8e88d0536b8f19ebe5f8061c32 434 SUPERFAMILY SSF53613 34 417 7.89E-45 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c04950 97620e14ad9b3314a9977e0c1556f254 330 Pfam PF13280 WYL domain 164 318 3.4E-18 T 11-10-2018 IPR026881 WYL domain VV93_v1c15150 65b1ccf3478acebddd22de9d62bb5527 278 Gene3D G3DSA:1.10.10.10 215 277 1.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c15150 65b1ccf3478acebddd22de9d62bb5527 278 PIRSF PIRSF012524 1 278 3.1E-99 T 11-10-2018 IPR014464 Conserved virulence factor B VV93_v1c15150 65b1ccf3478acebddd22de9d62bb5527 278 Pfam PF13509 S1 domain 71 132 2.1E-5 T 11-10-2018 IPR039566 Conserved virulence factor B, S1 domain VV93_v1c15150 65b1ccf3478acebddd22de9d62bb5527 278 Pfam PF13509 S1 domain 4 63 4.3E-22 T 11-10-2018 IPR039566 Conserved virulence factor B, S1 domain VV93_v1c43930 85663eb4ca7228d95f1ffea7ec2a7ef0 207 SUPERFAMILY SSF48371 7 130 1.01E-7 T 11-10-2018 IPR016024 Armadillo-type fold VV93_v1c43930 85663eb4ca7228d95f1ffea7ec2a7ef0 207 Gene3D G3DSA:1.25.10.10 3 151 8.9E-10 T 11-10-2018 IPR011989 Armadillo-like helical VV93_v1c43930 85663eb4ca7228d95f1ffea7ec2a7ef0 207 Pfam PF13646 HEAT repeats 7 85 1.8E-7 T 11-10-2018 VV93_v1c43930 85663eb4ca7228d95f1ffea7ec2a7ef0 207 SMART SM00567 E-Z type HEAT repeats 54 83 89.0 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 VV93_v1c43930 85663eb4ca7228d95f1ffea7ec2a7ef0 207 SMART SM00567 E-Z type HEAT repeats 18 47 0.33 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 VV93_v1c19740 aa4539c9598cd538be695c696fad6382 565 SUPERFAMILY SSF56349 232 554 1.44E-38 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c19740 aa4539c9598cd538be695c696fad6382 565 Pfam PF00589 Phage integrase family 399 534 2.1E-8 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c19740 aa4539c9598cd538be695c696fad6382 565 Gene3D G3DSA:1.10.443.10 368 560 3.2E-17 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c19740 aa4539c9598cd538be695c696fad6382 565 Gene3D G3DSA:1.10.150.130 227 363 1.8E-10 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal VV93_v1c39900 47bc5f6d1bb96b0981bbcaf03bc64202 269 SUPERFAMILY SSF52096 12 261 9.81E-70 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c39900 47bc5f6d1bb96b0981bbcaf03bc64202 269 Gene3D G3DSA:1.10.12.10 206 267 8.0E-22 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal VV93_v1c39900 47bc5f6d1bb96b0981bbcaf03bc64202 269 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 261 5.8E-49 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 VV93_v1c39900 47bc5f6d1bb96b0981bbcaf03bc64202 269 Gene3D G3DSA:3.90.226.10 4 205 1.6E-62 T 11-10-2018 VV93_v1c13570 62bfbde5213a394a37841b6b97bb1a8b 306 Gene3D G3DSA:1.10.3210.10 19 302 1.2E-39 T 11-10-2018 VV93_v1c13570 62bfbde5213a394a37841b6b97bb1a8b 306 Pfam PF08668 HDOD domain 39 235 3.0E-38 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c13570 62bfbde5213a394a37841b6b97bb1a8b 306 SUPERFAMILY SSF109604 25 301 1.0E-43 T 11-10-2018 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 Gene3D G3DSA:1.20.5.1030 67 123 5.1E-17 T 11-10-2018 IPR038379 SecE superfamily VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 72 100 - T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 PRINTS PR01650 Bacterial translocase SecE signature 90 110 6.2E-42 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 PRINTS PR01650 Bacterial translocase SecE signature 45 66 6.2E-42 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 PRINTS PR01650 Bacterial translocase SecE signature 66 86 6.2E-42 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 PRINTS PR01650 Bacterial translocase SecE signature 110 126 6.2E-42 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 72 122 1.5E-20 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 Hamap MF_00422 Protein translocase subunit SecE [secE]. 68 122 13.517 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 VV93_v1c28820 114de7c9edc3e7d440f0c1d6396f4ca9 126 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 72 122 3.2E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 VV93_v1c09110 042b5f5b9fd7d7e360e1d2f050cab5dd 150 Pfam PF01957 NfeD-like C-terminal, partner-binding 12 148 4.0E-24 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain VV93_v1c09110 042b5f5b9fd7d7e360e1d2f050cab5dd 150 Gene3D G3DSA:2.40.50.140 80 150 2.5E-10 T 11-10-2018 VV93_v1c09110 042b5f5b9fd7d7e360e1d2f050cab5dd 150 SUPERFAMILY SSF141322 91 147 6.67E-6 T 11-10-2018 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 Gene3D G3DSA:3.40.50.300 177 456 1.3E-105 T 11-10-2018 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 Pfam PF00772 DnaB-like helicase N terminal domain 20 121 3.6E-37 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 Gene3D G3DSA:1.10.860.10 12 176 7.7E-56 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 20 457 1.2E-176 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 SUPERFAMILY SSF48024 18 129 6.02E-39 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 Pfam PF03796 DnaB-like helicase C terminal domain 199 455 2.0E-112 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 VV93_v1c27080 302fc6bbfab974dd8fb40eabeeabc2b5 464 SUPERFAMILY SSF52540 197 448 1.24E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21890 c478bbe12d54992067064800c734d6f8 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 122 7.7E-24 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VV93_v1c21890 c478bbe12d54992067064800c734d6f8 136 Gene3D G3DSA:1.20.120.340 2 126 8.0E-39 T 11-10-2018 VV93_v1c21890 c478bbe12d54992067064800c734d6f8 136 PIRSF PIRSF039090 1 132 2.0E-42 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VV93_v1c21890 c478bbe12d54992067064800c734d6f8 136 SUPERFAMILY SSF101116 6 127 2.62E-39 T 11-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 VV93_v1c21890 c478bbe12d54992067064800c734d6f8 136 Pfam PF02561 Flagellar protein FliS 6 122 8.5E-37 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 VV93_v1c11650 a46414d25147aa12f8a339b4b2a51482 235 Gene3D G3DSA:3.40.50.150 11 235 2.5E-74 T 11-10-2018 VV93_v1c11650 a46414d25147aa12f8a339b4b2a51482 235 Pfam PF13489 Methyltransferase domain 52 200 1.0E-24 T 11-10-2018 VV93_v1c11650 a46414d25147aa12f8a339b4b2a51482 235 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 11 229 3.9E-87 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 VV93_v1c11650 a46414d25147aa12f8a339b4b2a51482 235 SUPERFAMILY SSF53335 15 233 7.45E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c11650 a46414d25147aa12f8a339b4b2a51482 235 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 235 37.382 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 7.3E-199 T 11-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 SUPERFAMILY SSF52540 1 239 1.69E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 Gene3D G3DSA:3.40.50.300 1 232 4.0E-75 T 11-10-2018 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 Pfam PF00005 ABC transporter 21 169 1.4E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 SUPERFAMILY SSF55021 248 343 1.26E-25 T 11-10-2018 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 Gene3D G3DSA:3.30.70.260 244 344 2.1E-40 T 11-10-2018 VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 SMART SM00930 265 340 3.7E-29 T 11-10-2018 IPR018449 NIL domain VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 Pfam PF09383 NIL domain 268 339 4.5E-21 T 11-10-2018 IPR018449 NIL domain VV93_v1c08290 ca49c4394aab77416e01111dcab34279 344 SMART SM00382 30 235 7.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c10620 1e62ce32a340eeebe7257de91b650793 562 Pfam PF16130 Domain of unknown function (DUF4842) 348 550 3.3E-48 T 11-10-2018 IPR032295 Domain of unknown function DUF4842 VV93_v1c10620 1e62ce32a340eeebe7257de91b650793 562 TIGRFAM TIGR04456 LruC_dom: LruC domain 315 551 2.8E-69 T 11-10-2018 IPR031025 LruC domain VV93_v1c35710 b40316fcbf20a3555b967f2de6283f0f 139 Gene3D G3DSA:3.40.1650.10 8 136 7.0E-37 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c35710 b40316fcbf20a3555b967f2de6283f0f 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 5.5E-48 T 11-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c35710 b40316fcbf20a3555b967f2de6283f0f 139 SUPERFAMILY SSF102546 1 139 2.22E-43 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 VV93_v1c35710 b40316fcbf20a3555b967f2de6283f0f 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.824 T 11-10-2018 IPR023064 D-ribose pyranase GO:0016872 VV93_v1c07200 7da303fda1e91dd3faf8d81bee3d3f5f 443 Pfam PF02601 Exonuclease VII, large subunit 126 440 1.3E-100 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 VV93_v1c07200 7da303fda1e91dd3faf8d81bee3d3f5f 443 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 357 2.6E-134 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c07200 7da303fda1e91dd3faf8d81bee3d3f5f 443 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 7.5E-30 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 VV93_v1c07200 7da303fda1e91dd3faf8d81bee3d3f5f 443 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.618 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 VV93_v1c26290 a86fe01e49af28229add2f6a9314c974 357 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 5.9E-133 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 VV93_v1c26290 a86fe01e49af28229add2f6a9314c974 357 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 354 1.5E-70 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 Pfam PF00155 Aminotransferase class I and II 128 444 5.4E-26 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 SUPERFAMILY SSF53383 119 478 2.28E-73 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 SMART SM00345 22 81 1.4E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 8.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 SUPERFAMILY SSF46785 18 82 1.4E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 Gene3D G3DSA:1.10.10.10 14 82 1.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 Gene3D G3DSA:3.40.640.10 109 472 2.1E-104 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 9.2E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c41670 215920a553768d78dd5d4081e49f3047 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 9.2E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 Gene3D G3DSA:3.40.190.290 93 287 9.3E-34 T 11-10-2018 VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 60 6.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 Pfam PF03466 LysR substrate binding domain 92 257 9.3E-18 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 Gene3D G3DSA:1.10.10.10 2 86 1.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 SUPERFAMILY SSF53850 92 290 2.47E-24 T 11-10-2018 VV93_v1c12790 2cd63f88df72d994958ed995a535c421 291 SUPERFAMILY SSF46785 3 84 1.2E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c21500 d55325e4e314a1dcc75e4f09a7cfaa4b 404 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 116 6.0E-32 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI VV93_v1c21500 d55325e4e314a1dcc75e4f09a7cfaa4b 404 Pfam PF14559 Tetratricopeptide repeat 176 244 3.5E-8 T 11-10-2018 VV93_v1c21500 d55325e4e314a1dcc75e4f09a7cfaa4b 404 Gene3D G3DSA:1.25.40.10 153 293 5.7E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c21500 d55325e4e314a1dcc75e4f09a7cfaa4b 404 SUPERFAMILY SSF48452 161 266 2.47E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 Pfam PF00455 DeoR C terminal sensor domain 75 230 1.6E-40 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 4.5E-16 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 SMART SM01134 73 233 3.4E-52 T 11-10-2018 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 Gene3D G3DSA:1.10.10.10 1 55 4.9E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 SMART SM00420 6 58 3.8E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.4E-9 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.4E-9 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 SUPERFAMILY SSF46785 5 60 6.62E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c19220 7b84fa135be5f9300db27e02a3285dc7 238 SUPERFAMILY SSF100950 76 233 2.3E-24 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c45540 14d93749c2a1aaca2a64102b7064c463 405 Gene3D G3DSA:3.40.50.300 107 398 5.5E-57 T 11-10-2018 VV93_v1c45540 14d93749c2a1aaca2a64102b7064c463 405 SUPERFAMILY SSF52540 108 368 2.1E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c45540 14d93749c2a1aaca2a64102b7064c463 405 Pfam PF13614 AAA domain 110 296 5.7E-23 T 11-10-2018 IPR025669 AAA domain VV93_v1c45540 14d93749c2a1aaca2a64102b7064c463 405 Gene3D G3DSA:1.10.1660.30 36 102 5.7E-6 T 11-10-2018 VV93_v1c01650 0cb75b3702bb01eb0297853c26ec1b6a 201 Pfam PF02036 SCP-2 sterol transfer family 18 111 4.2E-22 T 11-10-2018 IPR003033 SCP2 sterol-binding domain VV93_v1c01650 0cb75b3702bb01eb0297853c26ec1b6a 201 Gene3D G3DSA:3.30.1050.10 7 119 7.9E-6 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c01650 0cb75b3702bb01eb0297853c26ec1b6a 201 SUPERFAMILY SSF55718 13 117 5.3E-10 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 Pfam PF00012 Hsp70 protein 81 315 2.3E-18 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 PRINTS PR00301 70kDa heat shock protein signature 6 19 3.3E-9 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 PRINTS PR00301 70kDa heat shock protein signature 165 185 3.3E-9 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 PRINTS PR00301 70kDa heat shock protein signature 398 418 3.3E-9 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 PRINTS PR00301 70kDa heat shock protein signature 232 242 3.3E-9 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 Pfam PF12531 DNA-K related protein 685 932 5.1E-100 T 11-10-2018 IPR021030 Protein of unknown function DUF3731 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 SUPERFAMILY SSF53067 5 209 2.33E-31 T 11-10-2018 VV93_v1c17870 772b5ee82aa91abe4498b7da018bef5d 935 SUPERFAMILY SSF53067 223 456 5.44E-22 T 11-10-2018 VV93_v1c10640 62fb83547ce655f7b7e0254b8e98606a 294 Gene3D G3DSA:2.70.98.10 2 293 1.1E-84 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c10640 62fb83547ce655f7b7e0254b8e98606a 294 Pfam PF01263 Aldose 1-epimerase 27 291 1.5E-51 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VV93_v1c10640 62fb83547ce655f7b7e0254b8e98606a 294 PIRSF PIRSF016020 5 294 1.1E-61 T 11-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 VV93_v1c10640 62fb83547ce655f7b7e0254b8e98606a 294 SUPERFAMILY SSF74650 6 288 6.91E-75 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c23900 21bb00fa0a895bd9f246026a9f6285c8 307 Gene3D G3DSA:3.40.50.1000 109 279 7.7E-22 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c23900 21bb00fa0a895bd9f246026a9f6285c8 307 SUPERFAMILY SSF56784 35 248 5.61E-14 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c23900 21bb00fa0a895bd9f246026a9f6285c8 307 Pfam PF12710 haloacid dehalogenase-like hydrolase 40 232 1.5E-12 T 11-10-2018 VV93_v1c15590 08664f3cb0518be0449ca4ac8e6a09c4 399 SMART SM01204 228 375 4.7E-28 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VV93_v1c15590 08664f3cb0518be0449ca4ac8e6a09c4 399 Pfam PF08495 FIST N domain 32 226 9.4E-23 T 11-10-2018 IPR013702 FIST domain, N-terminal VV93_v1c15590 08664f3cb0518be0449ca4ac8e6a09c4 399 SMART SM00897 28 227 5.1E-35 T 11-10-2018 IPR013702 FIST domain, N-terminal VV93_v1c15590 08664f3cb0518be0449ca4ac8e6a09c4 399 Pfam PF10442 FIST C domain 229 374 4.5E-15 T 11-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 VV93_v1c38780 643566b50431ed29f526815f55704afe 245 Gene3D G3DSA:1.10.10.10 10 80 4.1E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c38780 643566b50431ed29f526815f55704afe 245 Pfam PF01614 Bacterial transcriptional regulator 131 239 1.5E-13 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal VV93_v1c38780 643566b50431ed29f526815f55704afe 245 Pfam PF09339 IclR helix-turn-helix domain 14 61 1.2E-5 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 VV93_v1c38780 643566b50431ed29f526815f55704afe 245 SUPERFAMILY SSF55781 81 240 3.2E-32 T 11-10-2018 VV93_v1c38780 643566b50431ed29f526815f55704afe 245 Gene3D G3DSA:3.30.450.40 81 241 6.3E-59 T 11-10-2018 IPR029016 GAF-like domain superfamily VV93_v1c38780 643566b50431ed29f526815f55704afe 245 SUPERFAMILY SSF46785 7 66 7.31E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c31100 103fb26e2f28aca00301925279b285e3 602 Pfam PF02690 Na+/Pi-cotransporter 203 290 2.1E-16 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VV93_v1c31100 103fb26e2f28aca00301925279b285e3 602 Pfam PF02690 Na+/Pi-cotransporter 50 185 2.2E-50 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VV93_v1c31100 103fb26e2f28aca00301925279b285e3 602 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 42 355 4.9E-71 T 11-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 VV93_v1c31100 103fb26e2f28aca00301925279b285e3 602 SUPERFAMILY SSF109755 372 587 2.09E-13 T 11-10-2018 VV93_v1c09780 2ef1f61a1a39867d51883bf274e6000b 87 Gene3D G3DSA:3.30.1070.10 1 84 2.2E-26 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 VV93_v1c09780 2ef1f61a1a39867d51883bf274e6000b 87 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 85 18.817 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VV93_v1c09780 2ef1f61a1a39867d51883bf274e6000b 87 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 84 7.4E-34 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VV93_v1c09780 2ef1f61a1a39867d51883bf274e6000b 87 Pfam PF03776 Septum formation topological specificity factor MinE 14 83 5.3E-23 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 VV93_v1c09780 2ef1f61a1a39867d51883bf274e6000b 87 SUPERFAMILY SSF55229 33 86 1.57E-16 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 Gene3D G3DSA:3.40.50.2300 3 152 1.1E-27 T 11-10-2018 VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 SUPERFAMILY SSF52172 5 135 1.39E-32 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 Pfam PF00072 Response regulator receiver domain 7 118 2.1E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 SMART SM00448 5 118 9.0E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 Pfam PF12431 Transcriptional regulator 134 162 4.0E-8 T 11-10-2018 IPR028141 Transcriptional regulator VV93_v1c14800 4b9779127d0822fcc2984119f0f2828b 228 PIRSF PIRSF006171 3 228 7.3E-83 T 11-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 VV93_v1c22480 71a159741b60d79a8a044259e4ba2da2 204 Gene3D G3DSA:3.40.50.360 1 182 6.4E-53 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c22480 71a159741b60d79a8a044259e4ba2da2 204 SUPERFAMILY SSF52218 5 180 3.79E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c22480 71a159741b60d79a8a044259e4ba2da2 204 Pfam PF02525 Flavodoxin-like fold 5 173 7.6E-46 T 11-10-2018 IPR003680 Flavodoxin-like fold VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 SUPERFAMILY SSF141868 148 381 4.84E-74 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 SMART SM00052 138 380 3.0E-70 T 11-10-2018 IPR001633 EAL domain VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 Pfam PF00563 EAL domain 149 375 2.0E-64 T 11-10-2018 IPR001633 EAL domain VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 Gene3D G3DSA:3.40.50.2300 1 138 2.0E-20 T 11-10-2018 VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 SUPERFAMILY SSF52172 3 141 9.11E-19 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 Gene3D G3DSA:3.20.20.450 139 383 1.1E-74 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 SMART SM00448 5 122 7.3E-5 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c33120 02e735ece426ad1efb14b9eb8a5a51b1 386 Pfam PF00072 Response regulator receiver domain 7 120 1.7E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 11 243 6.3E-98 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 11 226 3.6E-80 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 Pfam PF00929 Exonuclease 13 180 5.3E-38 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 SUPERFAMILY SSF53098 10 190 2.05E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 Gene3D G3DSA:3.30.420.10 4 195 1.8E-57 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c22500 463e0721eaced24f9d09cce399e87232 243 SMART SM00479 11 189 6.1E-52 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 SUPERFAMILY SSF53383 16 400 2.58E-129 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 Gene3D G3DSA:3.40.640.10 59 304 2.9E-151 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 Gene3D G3DSA:3.90.1150.10 25 392 2.9E-151 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 9.4E-152 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 PIRSF PIRSF000521 172 402 2.5E-36 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 PIRSF PIRSF000521 27 155 2.0E-6 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 Pfam PF00202 Aminotransferase class-III 22 399 3.8E-127 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 70.168 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 1.4E-206 T 11-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 VV93_v1c27820 660d4ba687d14f19c2eb13d3aac016ae 403 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 VV93_v1c06180 79e4114eb2485ab03389755fb2f461e7 271 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VV93_v1c06180 79e4114eb2485ab03389755fb2f461e7 271 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 262 20.225 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VV93_v1c06180 79e4114eb2485ab03389755fb2f461e7 271 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 257 2.5E-83 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VV93_v1c06180 79e4114eb2485ab03389755fb2f461e7 271 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 263 2.4E-92 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Pfam PF04052 TolB amino-terminal domain 25 126 4.0E-35 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Pfam PF07676 WD40-like Beta Propeller Repeat 256 291 1.7E-10 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Pfam PF07676 WD40-like Beta Propeller Repeat 299 335 2.7E-13 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Pfam PF07676 WD40-like Beta Propeller Repeat 221 247 4.7E-8 T 11-10-2018 IPR011659 WD40-like Beta Propeller VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Gene3D G3DSA:3.40.50.10070 23 182 5.2E-49 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 SUPERFAMILY SSF52964 29 180 7.98E-42 T 11-10-2018 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 16 446 4.7E-168 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 5 445 51.865 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 Gene3D G3DSA:2.120.10.30 184 449 1.8E-98 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VV93_v1c19850 37e93db221ab526ef362f502a5931bd0 449 SUPERFAMILY SSF69304 175 447 1.57E-57 T 11-10-2018 VV93_v1c26640 a19e67979d1667eaf0057ffc88f058e5 192 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 9.9E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26640 a19e67979d1667eaf0057ffc88f058e5 192 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 3.8E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26640 a19e67979d1667eaf0057ffc88f058e5 192 Gene3D G3DSA:3.30.700.10 8 192 4.3E-9 T 11-10-2018 VV93_v1c26640 a19e67979d1667eaf0057ffc88f058e5 192 SUPERFAMILY SSF54523 8 104 1.65E-12 T 11-10-2018 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 6.8E-162 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 Pfam PF01235 Sodium:alanine symporter family 48 452 1.2E-161 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 206 225 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 303 321 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 410 430 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 349 371 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 87 109 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c05980 df454c95292f3d4c0abbf54d101a702e 476 PRINTS PR00175 Sodium/alanine symporter signature 178 196 3.5E-57 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c23170 78701e5fd05edd34c663d24a8a0cb4ad 260 Gene3D G3DSA:2.40.230.20 21 260 6.2E-71 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 VV93_v1c23170 78701e5fd05edd34c663d24a8a0cb4ad 260 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 29 260 6.7E-93 T 11-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 VV93_v1c23170 78701e5fd05edd34c663d24a8a0cb4ad 260 SUPERFAMILY SSF111364 29 260 2.35E-78 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 VV93_v1c40760 f1bb33356060630b6e6e80c7cdf2158f 120 SUPERFAMILY SSF55298 1 116 6.13E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c40760 f1bb33356060630b6e6e80c7cdf2158f 120 Pfam PF01042 Endoribonuclease L-PSP 33 114 1.2E-18 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VV93_v1c40760 f1bb33356060630b6e6e80c7cdf2158f 120 Gene3D G3DSA:3.30.1330.40 1 119 2.2E-30 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c13400 eae9a96749214df5290f744346583002 220 Pfam PF11140 Protein of unknown function (DUF2913) 3 214 1.4E-85 T 11-10-2018 IPR021316 Protein of unknown function DUF2913 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 407 1.9E-122 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 2.0E-182 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 SUPERFAMILY SSF55205 6 418 3.27E-142 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 43.621 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 Gene3D G3DSA:3.65.10.10 22 229 1.0E-170 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VV93_v1c04290 0f698efd378a474e12fb44e4470000d3 421 Gene3D G3DSA:3.65.10.10 12 414 1.0E-170 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 VV93_v1c21460 48759d9bcf1f8926ead65ac8a37f2770 243 Pfam PF11859 Protein of unknown function (DUF3379) 1 239 4.0E-84 T 11-10-2018 IPR021806 Protein of unknown function DUF3379 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 326 3.6E-39 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 SUPERFAMILY SSF55021 335 408 8.02E-18 T 11-10-2018 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 Gene3D G3DSA:3.40.50.720 109 297 4.6E-112 T 11-10-2018 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 SUPERFAMILY SSF52283 7 136 9.99E-50 T 11-10-2018 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 7.3E-53 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 Gene3D G3DSA:3.30.70.260 328 408 2.6E-33 T 11-10-2018 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 SUPERFAMILY SSF51735 108 295 7.9E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c25590 582aa16b47be6f939fdf0a9ef59f3c7b 409 Gene3D G3DSA:3.40.50.720 14 312 4.6E-112 T 11-10-2018 VV93_v1c14820 e82759f3e6d5e55299f78c04caf1db94 244 SUPERFAMILY SSF100950 3 243 5.76E-57 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c14820 e82759f3e6d5e55299f78c04caf1db94 244 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 9 242 1.2E-50 T 11-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 VV93_v1c14820 e82759f3e6d5e55299f78c04caf1db94 244 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 4.0E-59 T 11-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 VV93_v1c14820 e82759f3e6d5e55299f78c04caf1db94 244 Gene3D G3DSA:3.40.50.1360 1 244 6.0E-86 T 11-10-2018 VV93_v1c33750 d60f1972db8a716d14fe10534a5d9851 437 Pfam PF01943 Polysaccharide biosynthesis protein 28 298 4.8E-8 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 Gene3D G3DSA:2.40.50.140 293 352 7.2E-31 T 11-10-2018 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 SUPERFAMILY SSF52540 4 245 5.9E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 Pfam PF00005 ABC transporter 21 163 1.1E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 Gene3D G3DSA:3.40.50.300 3 223 6.1E-71 T 11-10-2018 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 Gene3D G3DSA:2.40.50.940 224 361 7.2E-31 T 11-10-2018 VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 SMART SM00382 30 214 1.8E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c10160 3a0e1e0d78a7270e8dcde08a7d1b8210 371 SUPERFAMILY SSF50331 238 368 2.09E-23 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal VV93_v1c35640 cfb3d9044c6c99b7029cf8d473d3ff69 335 SUPERFAMILY SSF53383 1 334 1.46E-118 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c35640 cfb3d9044c6c99b7029cf8d473d3ff69 335 Pfam PF01212 Beta-eliminating lyase 2 283 4.5E-100 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 VV93_v1c35640 cfb3d9044c6c99b7029cf8d473d3ff69 335 Gene3D G3DSA:3.90.1150.10 244 334 1.3E-22 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c35640 cfb3d9044c6c99b7029cf8d473d3ff69 335 PIRSF PIRSF017617 1 334 1.4E-131 T 11-10-2018 IPR023603 Threonine aldolase VV93_v1c35640 cfb3d9044c6c99b7029cf8d473d3ff69 335 Gene3D G3DSA:3.40.640.10 1 243 7.2E-97 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c26560 1d14f57a348d50bb2b62e434a0853612 296 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 274 4.7E-89 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VV93_v1c26560 1d14f57a348d50bb2b62e434a0853612 296 Gene3D G3DSA:2.40.10.350 180 257 3.2E-36 T 11-10-2018 VV93_v1c26560 1d14f57a348d50bb2b62e434a0853612 296 Gene3D G3DSA:2.40.10.340 121 266 3.2E-36 T 11-10-2018 VV93_v1c26560 1d14f57a348d50bb2b62e434a0853612 296 Pfam PF04085 rod shape-determining protein MreC 123 269 1.2E-38 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VV93_v1c26560 1d14f57a348d50bb2b62e434a0853612 296 PIRSF PIRSF038471 2 283 2.5E-80 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 VV93_v1c33580 ab484550318bdbfd82c11973547f9b4b 287 Gene3D G3DSA:1.10.3720.10 61 285 1.6E-35 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33580 ab484550318bdbfd82c11973547f9b4b 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 283 3.4E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c33580 ab484550318bdbfd82c11973547f9b4b 287 SUPERFAMILY SSF161098 24 274 4.02E-42 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33580 ab484550318bdbfd82c11973547f9b4b 287 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 14 283 4.9E-99 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 VV93_v1c37110 d9ed2b6cb79d86cd08f005f26f937756 433 Pfam PF13343 Bacterial extracellular solute-binding protein 83 295 5.3E-13 T 11-10-2018 VV93_v1c37110 d9ed2b6cb79d86cd08f005f26f937756 433 SUPERFAMILY SSF53850 32 290 1.55E-27 T 11-10-2018 VV93_v1c37110 d9ed2b6cb79d86cd08f005f26f937756 433 Gene3D G3DSA:3.40.190.10 135 276 5.6E-21 T 11-10-2018 VV93_v1c20680 6a8367e8c19653d65804121feda05b90 169 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 164 8.9E-46 T 11-10-2018 IPR018639 Domain of unknown function DUF2062 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 103 4.7E-43 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 Pfam PF01491 Frataxin-like domain 1 100 1.3E-29 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 11-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 Gene3D G3DSA:3.30.920.10 1 104 1.4E-37 T 11-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 SUPERFAMILY SSF55387 1 103 3.66E-39 T 11-10-2018 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 103 27.521 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c00750 e067f4b14e564076a0cdfeca1b7d312d 104 SMART SM01219 1 104 1.3E-54 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 VV93_v1c21660 3d34106297586cfdb639d3ca42c52f96 126 Pfam PF00072 Response regulator receiver domain 7 119 1.8E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21660 3d34106297586cfdb639d3ca42c52f96 126 SMART SM00448 5 119 6.5E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c21660 3d34106297586cfdb639d3ca42c52f96 126 Gene3D G3DSA:3.40.50.2300 1 126 1.5E-40 T 11-10-2018 VV93_v1c21660 3d34106297586cfdb639d3ca42c52f96 126 SUPERFAMILY SSF52172 3 124 7.54E-38 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c32190 812a76218ccafc39d20364fe3af999a3 280 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 3 268 9.9E-58 T 11-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 VV93_v1c32190 812a76218ccafc39d20364fe3af999a3 280 SUPERFAMILY SSF51197 1 275 1.69E-82 T 11-10-2018 VV93_v1c32190 812a76218ccafc39d20364fe3af999a3 280 Gene3D G3DSA:3.60.130.10 1 279 4.7E-82 T 11-10-2018 VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 8.7E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 Gene3D G3DSA:1.10.10.10 1 86 1.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 Pfam PF03466 LysR substrate binding domain 91 291 2.3E-14 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 Gene3D G3DSA:3.40.190.10 96 292 2.9E-27 T 11-10-2018 VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 Gene3D G3DSA:3.40.190.10 169 269 2.9E-27 T 11-10-2018 VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 SUPERFAMILY SSF46785 2 82 1.63E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42810 52031dff29fb9c24ad89c38ed1ddd8b3 307 SUPERFAMILY SSF53850 88 294 4.19E-24 T 11-10-2018 VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 Gene3D G3DSA:3.40.390.10 17 239 2.7E-8 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 SUPERFAMILY SSF55486 21 242 4.3E-17 T 11-10-2018 VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 45 190 2.4E-30 T 11-10-2018 VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 Gene3D G3DSA:2.60.120.260 309 408 3.8E-5 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 Pfam PF01483 Proprotein convertase P-domain 327 407 3.0E-17 T 11-10-2018 IPR002884 P domain GO:0004252|GO:0006508 VV93_v1c35240 d5b2f40af92595d0485ef756a94bc8d5 409 SUPERFAMILY SSF49785 288 408 1.02E-14 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 Gene3D G3DSA:1.20.1560.10 1 323 2.7E-77 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 SUPERFAMILY SSF90123 2 321 4.05E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 SUPERFAMILY SSF52540 330 570 2.05E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 Pfam PF00005 ABC transporter 352 500 3.2E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 SMART SM00382 361 546 1.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 Gene3D G3DSA:3.40.50.300 328 588 2.3E-81 T 11-10-2018 VV93_v1c18110 ed500105b3a4ecc0cfe648c7da1d0293 591 Pfam PF00664 ABC transporter transmembrane region 21 287 1.3E-45 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 SUPERFAMILY SSF46689 244 294 3.67E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 SMART SM00342 208 291 3.5E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 Pfam PF12833 Helix-turn-helix domain 215 292 2.4E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 SUPERFAMILY SSF46689 191 242 3.51E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 Gene3D G3DSA:1.10.10.60 242 295 1.7E-16 T 11-10-2018 VV93_v1c32620 2c2996fbf964688910e83c1f4bb2d822 295 Gene3D G3DSA:1.10.10.60 190 241 3.3E-10 T 11-10-2018 VV93_v1c03940 081233d34c5206bd514b2acd4df6d82a 209 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 42 203 37.458 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c03940 081233d34c5206bd514b2acd4df6d82a 209 Gene3D G3DSA:3.30.1060.10 3 209 5.3E-89 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c03940 081233d34c5206bd514b2acd4df6d82a 209 SUPERFAMILY SSF55068 3 207 5.1E-79 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c03940 081233d34c5206bd514b2acd4df6d82a 209 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 197 1.7E-67 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c03940 081233d34c5206bd514b2acd4df6d82a 209 Pfam PF01625 Peptide methionine sulfoxide reductase 45 197 1.4E-65 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 VV93_v1c18180 55d893451bcf2a664db1a921fe970997 304 Gene3D G3DSA:2.60.200.40 136 293 1.8E-23 T 11-10-2018 VV93_v1c18180 55d893451bcf2a664db1a921fe970997 304 SUPERFAMILY SSF111331 5 303 1.61E-54 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VV93_v1c18180 55d893451bcf2a664db1a921fe970997 304 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 127 6.9E-24 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 VV93_v1c18180 55d893451bcf2a664db1a921fe970997 304 SMART SM00046 5 135 3.0E-5 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 VV93_v1c18180 55d893451bcf2a664db1a921fe970997 304 Gene3D G3DSA:3.40.50.10330 3 133 2.8E-30 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 VV93_v1c36070 93cb6ee9cc947dd3c6c41b2a1aa4045b 188 Gene3D G3DSA:3.30.1330.60 60 186 1.1E-21 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c36070 93cb6ee9cc947dd3c6c41b2a1aa4045b 188 PRINTS PR01021 OMPA domain signature 117 132 4.3E-8 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c36070 93cb6ee9cc947dd3c6c41b2a1aa4045b 188 PRINTS PR01021 OMPA domain signature 132 148 4.3E-8 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 VV93_v1c36070 93cb6ee9cc947dd3c6c41b2a1aa4045b 188 SUPERFAMILY SSF103088 87 187 2.62E-20 T 11-10-2018 IPR036737 OmpA-like domain superfamily VV93_v1c36070 93cb6ee9cc947dd3c6c41b2a1aa4045b 188 Pfam PF00691 OmpA family 89 181 3.8E-19 T 11-10-2018 IPR006665 OmpA-like domain VV93_v1c02440 1167f7927879b3633103f08915a00170 82 Pfam PF12728 Helix-turn-helix domain 24 73 5.5E-11 T 11-10-2018 VV93_v1c02440 1167f7927879b3633103f08915a00170 82 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 24 70 1.3E-11 T 11-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 VV93_v1c39870 acb537064620a93267cfb010c005213d 129 Pfam PF13411 MerR HTH family regulatory protein 4 69 6.0E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c39870 acb537064620a93267cfb010c005213d 129 SMART SM00422 4 71 1.3E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 VV93_v1c39870 acb537064620a93267cfb010c005213d 129 Gene3D G3DSA:1.10.1660.10 1 128 2.2E-26 T 11-10-2018 VV93_v1c39870 acb537064620a93267cfb010c005213d 129 SUPERFAMILY SSF46955 4 118 2.05E-26 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily VV93_v1c09100 a14ac79c6ce800621753d78f84d76942 122 Pfam PF10973 Protein of unknown function (DUF2799) 29 110 1.6E-14 T 11-10-2018 IPR021242 Protein of unknown function DUF2799 VV93_v1c45290 0d13d48b27a81598f994d2a7ebdd06a2 352 Gene3D G3DSA:2.40.160.10 22 351 7.4E-34 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c45290 0d13d48b27a81598f994d2a7ebdd06a2 352 SUPERFAMILY SSF56935 26 350 1.19E-40 T 11-10-2018 VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 279 292 5.4E-5 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 294 317 2.0E-7 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 83 98 5.3E-7 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 108 122 1.3E-6 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 219 243 1.5E-7 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 Pfam PF03382 Mycoplasma protein of unknown function, DUF285 83 177 6.2E-29 T 11-10-2018 IPR005046 Protein of unknown function DUF285 VV93_v1c19370 d9f02dddef1276d95fd17abea3daba11 351 Pfam PF03382 Mycoplasma protein of unknown function, DUF285 255 339 1.2E-28 T 11-10-2018 IPR005046 Protein of unknown function DUF285 VV93_v1c17400 9fafc2c1905a9672fde7416af86e463a 1294 SUPERFAMILY SSF55486 284 656 5.87E-16 T 11-10-2018 VV93_v1c17400 9fafc2c1905a9672fde7416af86e463a 1294 Gene3D G3DSA:3.40.390.10 468 650 2.7E-8 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 VV93_v1c17400 9fafc2c1905a9672fde7416af86e463a 1294 Pfam PF16313 Met-zincin 574 795 2.3E-6 T 11-10-2018 IPR032534 Domain of unknown function DUF4953 VV93_v1c43940 a88867e438c097bb8569e5c945ac6f7b 145 Pfam PF14085 Domain of unknown function (DUF4265) 23 140 4.9E-19 T 11-10-2018 IPR025361 Protein of unknown function DUF4265 VV93_v1c16150 c0c52ef28949a532221f00a16cdf293c 155 Pfam PF00877 NlpC/P60 family 48 152 2.6E-27 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain VV93_v1c16150 c0c52ef28949a532221f00a16cdf293c 155 SUPERFAMILY SSF54001 38 153 4.66E-37 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VV93_v1c16150 c0c52ef28949a532221f00a16cdf293c 155 Gene3D G3DSA:3.90.1720.10 33 155 1.3E-37 T 11-10-2018 VV93_v1c08820 2a8eb4f63c254f0ddabe4ac089673d04 143 PIRSF PIRSF028687 1 143 7.7E-59 T 11-10-2018 IPR007293 Flagellar protein FlgP VV93_v1c08820 2a8eb4f63c254f0ddabe4ac089673d04 143 Pfam PF02169 LPP20 lipoprotein 21 118 8.5E-8 T 11-10-2018 IPR024952 Lipoprotein LPP20-like VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 Gene3D G3DSA:1.10.10.10 128 227 3.4E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 SMART SM00862 148 224 1.8E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 SMART SM00448 2 111 1.0E-44 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 SUPERFAMILY SSF46894 125 225 1.33E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 Gene3D G3DSA:3.40.50.2300 1 127 7.9E-38 T 11-10-2018 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 Pfam PF00072 Response regulator receiver domain 4 112 7.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 6.4E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c28350 b105bd89f91e36351fa9bb4fcd252f1a 227 SUPERFAMILY SSF52172 1 123 3.27E-39 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c36640 515f227fff19dd27efefeae42007158a 327 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 38 170 1.6E-62 T 11-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 VV93_v1c36640 515f227fff19dd27efefeae42007158a 327 SUPERFAMILY SSF52540 9 301 3.97E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c36640 515f227fff19dd27efefeae42007158a 327 Gene3D G3DSA:3.40.50.300 1 204 5.8E-51 T 11-10-2018 VV93_v1c36640 515f227fff19dd27efefeae42007158a 327 Gene3D G3DSA:1.10.8.300 208 324 5.5E-35 T 11-10-2018 VV93_v1c36640 515f227fff19dd27efefeae42007158a 327 PIRSF PIRSF002849 1 327 2.1E-126 T 11-10-2018 VV93_v1c42980 3dc4ec141374f0dba2948bb9c89dc3b2 302 SUPERFAMILY SSF103481 192 291 4.45E-13 T 11-10-2018 VV93_v1c42980 3dc4ec141374f0dba2948bb9c89dc3b2 302 Pfam PF00892 EamA-like transporter family 157 282 7.0E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c42980 3dc4ec141374f0dba2948bb9c89dc3b2 302 Pfam PF00892 EamA-like transporter family 21 151 6.1E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c42980 3dc4ec141374f0dba2948bb9c89dc3b2 302 SUPERFAMILY SSF103481 55 155 1.44E-14 T 11-10-2018 VV93_v1c43350 1ae6af479950b257e0a0defab560f012 408 Gene3D G3DSA:3.40.190.10 20 365 3.4E-120 T 11-10-2018 VV93_v1c43350 1ae6af479950b257e0a0defab560f012 408 SUPERFAMILY SSF53850 18 389 1.6E-39 T 11-10-2018 VV93_v1c43350 1ae6af479950b257e0a0defab560f012 408 Pfam PF13416 Bacterial extracellular solute-binding protein 43 339 9.6E-16 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c43350 1ae6af479950b257e0a0defab560f012 408 Gene3D G3DSA:3.40.190.10 135 387 3.4E-120 T 11-10-2018 VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 144 22.893 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 PIRSF PIRSF004505 1 144 9.9E-40 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 Pfam PF02590 Predicted SPOUT methyltransferase 2 143 3.7E-44 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 Gene3D G3DSA:3.40.1280.10 1 145 2.0E-48 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 145 8.7E-73 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 VV93_v1c08440 27ca68169258ad4c9a316450db929bbb 145 SUPERFAMILY SSF75217 1 143 1.41E-46 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c32290 a7c426b19279c29181786b63b94a1217 261 Gene3D G3DSA:3.40.190.10 119 215 3.4E-24 T 11-10-2018 VV93_v1c32290 a7c426b19279c29181786b63b94a1217 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 244 1.5E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c32290 a7c426b19279c29181786b63b94a1217 261 Gene3D G3DSA:3.40.190.10 38 244 3.4E-24 T 11-10-2018 VV93_v1c32290 a7c426b19279c29181786b63b94a1217 261 SMART SM00062 33 250 0.0012 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c32290 a7c426b19279c29181786b63b94a1217 261 SUPERFAMILY SSF53850 34 244 1.09E-30 T 11-10-2018 VV93_v1c02270 57f9e9ec2bac93e01e309f99a40d2dd8 453 Pfam PF01618 MotA/TolQ/ExbB proton channel family 316 434 1.0E-28 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c02270 57f9e9ec2bac93e01e309f99a40d2dd8 453 PIRSF PIRSF037714 2 453 1.2E-171 T 11-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VV93_v1c13050 3c3f59762c0982d868ee46634f312404 129 Pfam PF04024 PspC domain 4 62 1.2E-14 T 11-10-2018 IPR007168 Phage shock protein, PspC, N-terminal VV93_v1c13050 3c3f59762c0982d868ee46634f312404 129 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 3 129 9.4E-48 T 11-10-2018 IPR014320 Phage shock protein, PspC VV93_v1c36830 a2306508b25165ac28d61a0cee8b4275 86 Pfam PF16691 Domain of unknown function (DUF5062) 6 86 2.2E-30 T 11-10-2018 IPR032036 Protein of unknown function DUF5062 VV93_v1c36830 a2306508b25165ac28d61a0cee8b4275 86 Gene3D G3DSA:1.20.120.1930 1 86 2.1E-39 T 11-10-2018 VV93_v1c00630 489c92cee3ef7338651d2acc274ee008 259 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 256 38.377 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VV93_v1c00630 489c92cee3ef7338651d2acc274ee008 259 Gene3D G3DSA:3.40.50.150 57 259 1.2E-73 T 11-10-2018 VV93_v1c00630 489c92cee3ef7338651d2acc274ee008 259 Gene3D G3DSA:3.40.1630.10 1 56 5.5E-20 T 11-10-2018 VV93_v1c00630 489c92cee3ef7338651d2acc274ee008 259 SUPERFAMILY SSF53335 5 254 3.38E-73 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c00630 489c92cee3ef7338651d2acc274ee008 259 Pfam PF04445 Putative SAM-dependent methyltransferase 19 254 6.2E-105 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 VV93_v1c10300 ca0a087f0c5307714c8db3d97bd85693 100 Gene3D G3DSA:1.10.150.280 27 99 1.2E-21 T 11-10-2018 VV93_v1c10300 ca0a087f0c5307714c8db3d97bd85693 100 SUPERFAMILY SSF47781 34 98 2.22E-25 T 11-10-2018 IPR010994 RuvA domain 2-like VV93_v1c10300 ca0a087f0c5307714c8db3d97bd85693 100 Pfam PF12836 Helix-hairpin-helix motif 38 98 2.5E-22 T 11-10-2018 VV93_v1c10300 ca0a087f0c5307714c8db3d97bd85693 100 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 38 99 6.9E-27 T 11-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain VV93_v1c19570 e0e466d71d2452c7bb16ebd170886efd 1120 Gene3D G3DSA:3.40.50.300 904 1108 7.7E-25 T 11-10-2018 VV93_v1c19570 e0e466d71d2452c7bb16ebd170886efd 1120 Pfam PF13087 AAA domain 971 1079 1.1E-13 T 11-10-2018 VV93_v1c19570 e0e466d71d2452c7bb16ebd170886efd 1120 SUPERFAMILY SSF52540 332 1083 2.71E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c19570 e0e466d71d2452c7bb16ebd170886efd 1120 Pfam PF13086 AAA domain 345 845 3.2E-12 T 11-10-2018 VV93_v1c17720 536f662304f85176a7c85f85ad6cca39 274 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 272 7.2E-64 T 11-10-2018 IPR017592 Pilus assembly, Flp-type CpaB VV93_v1c17720 536f662304f85176a7c85f85ad6cca39 274 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 113 230 9.0E-28 T 11-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain VV93_v1c17720 536f662304f85176a7c85f85ad6cca39 274 Pfam PF08666 SAF domain 39 105 6.5E-5 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VV93_v1c17720 536f662304f85176a7c85f85ad6cca39 274 SMART SM00858 38 106 3.5E-5 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 VV93_v1c35440 b2ec165afc74f2f4f2cc9ea95de385ee 423 Pfam PF13194 Domain of unknown function (DUF4010) 189 397 1.8E-64 T 11-10-2018 IPR025105 Domain of unknown function DUF4010 VV93_v1c35440 b2ec165afc74f2f4f2cc9ea95de385ee 423 Pfam PF02308 MgtC family 17 141 9.0E-19 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 SUPERFAMILY SSF161070 10 453 5.23E-118 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 Pfam PF00209 Sodium:neurotransmitter symporter family 10 138 1.5E-21 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 Pfam PF00209 Sodium:neurotransmitter symporter family 156 452 1.2E-25 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 314 333 1.7E-10 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 18 39 1.7E-10 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c22940 dd8e2672dad18edef4ab2ba6b2ff8d85 454 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 47 66 1.7E-10 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 VV93_v1c28070 0f73d4119ff3eb34043f789e00b3290e 285 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 9 285 49.889 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 VV93_v1c28070 0f73d4119ff3eb34043f789e00b3290e 285 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 48 283 3.0E-87 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 VV93_v1c28070 0f73d4119ff3eb34043f789e00b3290e 285 Pfam PF02666 Phosphatidylserine decarboxylase 62 280 2.7E-61 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 VV93_v1c18370 d6289a0fb9e029e9ea59cb1a78de6a76 195 SUPERFAMILY SSF109604 4 184 7.14E-44 T 11-10-2018 VV93_v1c18370 d6289a0fb9e029e9ea59cb1a78de6a76 195 Gene3D G3DSA:1.10.3210.10 1 195 5.1E-55 T 11-10-2018 VV93_v1c18370 d6289a0fb9e029e9ea59cb1a78de6a76 195 Pfam PF13023 HD domain 15 169 2.6E-52 T 11-10-2018 IPR006674 HD domain VV93_v1c02480 f5360f62f59102dc5c4b3e334841e1b3 189 SUPERFAMILY SSF160930 18 159 7.45E-5 T 11-10-2018 VV93_v1c32430 cef326b0ae6e0ad55cb1d6d948941d46 98 SUPERFAMILY SSF81296 15 96 9.33E-15 T 11-10-2018 IPR014756 Immunoglobulin E-set VV93_v1c32430 cef326b0ae6e0ad55cb1d6d948941d46 98 Gene3D G3DSA:2.60.40.10 10 97 1.6E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c12730 1391b638106201bff9506e5bb7131c6b 243 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 1.1E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 VV93_v1c12730 1391b638106201bff9506e5bb7131c6b 243 SUPERFAMILY SSF56300 1 223 4.49E-33 T 11-10-2018 VV93_v1c12730 1391b638106201bff9506e5bb7131c6b 243 Gene3D G3DSA:3.60.21.10 1 235 6.8E-18 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like VV93_v1c12730 1391b638106201bff9506e5bb7131c6b 243 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 6.6E-105 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VV93_v1c12730 1391b638106201bff9506e5bb7131c6b 243 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 241 122.774 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.8E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 SUPERFAMILY SSF53850 89 295 8.69E-41 T 11-10-2018 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 Gene3D G3DSA:1.10.10.10 1 90 7.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 Pfam PF03466 LysR substrate binding domain 88 294 1.3E-39 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 Gene3D G3DSA:3.40.190.10 92 291 2.7E-54 T 11-10-2018 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 Gene3D G3DSA:3.40.190.10 164 265 2.7E-54 T 11-10-2018 VV93_v1c43560 4d9ef2415aaf7ddbb09ba19213db3a84 315 SUPERFAMILY SSF46785 4 112 2.87E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c19920 5a778d4d4c162ae5b1df5e65ed6b9204 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 8.5E-168 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VV93_v1c19920 5a778d4d4c162ae5b1df5e65ed6b9204 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 3.2E-105 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VV93_v1c19920 5a778d4d4c162ae5b1df5e65ed6b9204 378 PIRSF PIRSF000267 2 376 2.3E-121 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 SUPERFAMILY SSF53850 94 300 1.81E-40 T 11-10-2018 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 Gene3D G3DSA:3.40.190.10 175 273 3.0E-55 T 11-10-2018 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 6.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 6.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 6.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 SUPERFAMILY SSF46785 8 88 2.2E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 Gene3D G3DSA:1.10.10.10 4 92 1.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 Gene3D G3DSA:3.40.190.10 94 298 3.0E-55 T 11-10-2018 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 2.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c33050 e241e8a07f46ce6cafce7c7be7991f3c 306 Pfam PF03466 LysR substrate binding domain 100 300 1.9E-18 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c40480 a0a90432b1cae03462203b71fd8f0447 341 Pfam PF02628 Cytochrome oxidase assembly protein 6 317 1.6E-84 T 11-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 VV93_v1c26330 97deffc5f6561ab61a55d4d9d0d4bf98 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 3.6E-31 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 VV93_v1c26330 97deffc5f6561ab61a55d4d9d0d4bf98 149 Gene3D G3DSA:3.40.50.10110 1 146 4.8E-40 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VV93_v1c26330 97deffc5f6561ab61a55d4d9d0d4bf98 149 SUPERFAMILY SSF102400 1 146 3.27E-42 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily VV93_v1c25260 5ad1544f883d556d5cf56e694fd0522c 93 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 37.024 T 11-10-2018 IPR023081 Cell division protein FtsB VV93_v1c25260 5ad1544f883d556d5cf56e694fd0522c 93 Pfam PF04977 Septum formation initiator 11 89 6.1E-28 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC VV93_v1c25260 5ad1544f883d556d5cf56e694fd0522c 93 Gene3D G3DSA:1.20.5.400 22 63 3.3E-10 T 11-10-2018 VV93_v1c43640 607450113913039cbb2a425bff7ff775 300 SUPERFAMILY SSF54001 59 255 7.2E-29 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily VV93_v1c43640 607450113913039cbb2a425bff7ff775 300 Pfam PF01841 Transglutaminase-like superfamily 93 152 1.9E-9 T 11-10-2018 IPR002931 Transglutaminase-like VV93_v1c43640 607450113913039cbb2a425bff7ff775 300 Gene3D G3DSA:3.10.620.30 91 164 3.5E-11 T 11-10-2018 VV93_v1c01190 bf2a6bfceea6fe7bd0f0d9bcf6e02696 725 SUPERFAMILY SSF56349 331 544 6.83E-6 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c34750 bf2a6bfceea6fe7bd0f0d9bcf6e02696 725 SUPERFAMILY SSF56349 331 544 6.83E-6 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 Pfam PF01047 MarR family 51 111 9.8E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 SUPERFAMILY SSF46785 10 159 4.21E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 SMART SM00347 43 146 1.6E-25 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 ProSitePatterns PS01117 MarR-type HTH domain signature. 85 119 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 Gene3D G3DSA:1.10.10.10 1 161 3.4E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 2.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 2.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 136 156 2.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c38260 0438fb6df17d1c5286864e8cebab8192 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 2.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 VV93_v1c11000 0684cd0649af93eb5826992141943d18 209 Gene3D G3DSA:3.40.30.10 1 208 1.5E-58 T 11-10-2018 VV93_v1c11000 0684cd0649af93eb5826992141943d18 209 SUPERFAMILY SSF52833 1 184 1.71E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c11000 0684cd0649af93eb5826992141943d18 209 Pfam PF13743 Thioredoxin 6 175 2.0E-21 T 11-10-2018 VV93_v1c25510 d3ff4c5d758629331422c5179f4e4f82 184 SUPERFAMILY SSF55826 20 171 9.81E-38 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c25510 d3ff4c5d758629331422c5179f4e4f82 184 Pfam PF04073 Aminoacyl-tRNA editing domain 43 159 1.0E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c25510 d3ff4c5d758629331422c5179f4e4f82 184 Gene3D G3DSA:3.90.960.10 22 171 1.9E-36 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 Pfam PF00072 Response regulator receiver domain 6 115 7.1E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 SUPERFAMILY SSF52172 2 131 1.31E-44 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 Gene3D G3DSA:3.40.50.2300 1 121 3.1E-41 T 11-10-2018 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 SUPERFAMILY SSF46894 132 228 5.1E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 SMART SM00862 152 227 5.0E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 SMART SM00448 4 114 4.4E-47 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 227 1.4E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 VV93_v1c43330 555f4b3c169bdf63ecb111aceb8181c1 235 Gene3D G3DSA:1.10.10.10 122 231 4.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c33510 70d3b1976fbbad132ae623a602691efe 763 Gene3D G3DSA:2.60.120.260 593 742 3.5E-11 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c33510 70d3b1976fbbad132ae623a602691efe 763 SUPERFAMILY SSF55486 171 486 8.06E-43 T 11-10-2018 VV93_v1c33510 70d3b1976fbbad132ae623a602691efe 763 SUPERFAMILY SSF49785 590 717 3.15E-18 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c33510 70d3b1976fbbad132ae623a602691efe 763 Pfam PF01483 Proprotein convertase P-domain 630 715 1.6E-18 T 11-10-2018 IPR002884 P domain GO:0004252|GO:0006508 VV93_v1c26470 c3ba5928ba1669a695d3c1099e2dc008 250 Pfam PF00849 RNA pseudouridylate synthase 22 174 1.6E-29 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c26470 c3ba5928ba1669a695d3c1099e2dc008 250 Gene3D G3DSA:3.30.2350.10 4 221 1.3E-68 T 11-10-2018 VV93_v1c26470 c3ba5928ba1669a695d3c1099e2dc008 250 SUPERFAMILY SSF55120 7 221 1.92E-62 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c26470 c3ba5928ba1669a695d3c1099e2dc008 250 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c35850 e3640a77fa3a9e243904b4356c52fe32 136 Pfam PF13581 Histidine kinase-like ATPase domain 18 131 1.5E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c35850 e3640a77fa3a9e243904b4356c52fe32 136 SUPERFAMILY SSF55874 27 131 1.78E-13 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c35850 e3640a77fa3a9e243904b4356c52fe32 136 Gene3D G3DSA:3.30.565.10 7 134 2.1E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c26390 659c7efbf835a8f09bf9b30d2fb99fcc 258 SUPERFAMILY SSF49785 2 156 2.72E-18 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c26390 659c7efbf835a8f09bf9b30d2fb99fcc 258 Gene3D G3DSA:2.60.120.260 35 156 8.8E-10 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c00830 2b411eb6d42be107517946eaa63774c8 516 PIRSF PIRSF028175 1 516 0.0 T 11-10-2018 IPR014540 Uncharacterised conserved protein UCP028175 VV93_v1c27750 4868428f947285ec132b5c668f8c05cc 325 SUPERFAMILY SSF53474 31 299 2.63E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c27750 4868428f947285ec132b5c668f8c05cc 325 Pfam PF00561 alpha/beta hydrolase fold 61 301 6.4E-20 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c27750 4868428f947285ec132b5c668f8c05cc 325 Gene3D G3DSA:3.40.50.1820 31 313 6.6E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c27750 4868428f947285ec132b5c668f8c05cc 325 PIRSF PIRSF005211 1 324 1.1E-103 T 11-10-2018 IPR012020 AB hydrolase 4 family VV93_v1c15010 eabba1baae54e2246ed4df2a722281d3 377 SUPERFAMILY SSF53756 26 360 7.63E-58 T 11-10-2018 VV93_v1c15010 eabba1baae54e2246ed4df2a722281d3 377 Pfam PF13692 Glycosyl transferases group 1 199 325 2.2E-23 T 11-10-2018 VV93_v1c15010 eabba1baae54e2246ed4df2a722281d3 377 Pfam PF13579 Glycosyl transferase 4-like domain 34 184 1.4E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c15010 eabba1baae54e2246ed4df2a722281d3 377 Gene3D G3DSA:3.40.50.2000 180 347 1.1E-47 T 11-10-2018 VV93_v1c15010 eabba1baae54e2246ed4df2a722281d3 377 Gene3D G3DSA:3.40.50.2000 33 360 1.1E-47 T 11-10-2018 VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 Gene3D G3DSA:3.40.50.10490 97 278 1.3E-39 T 11-10-2018 VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 Gene3D G3DSA:1.10.10.10 1 76 5.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 SUPERFAMILY SSF53697 99 275 5.37E-39 T 11-10-2018 VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 Pfam PF01380 SIS domain 129 257 1.8E-18 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 SUPERFAMILY SSF46689 2 77 1.16E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c45260 9b86aba5116c9b97aa57a96abb9fb5a5 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 74 4.4E-20 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 VV93_v1c29980 f2c363370616b53bf2f7b613ddfa273e 587 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 23 317 5.6E-10 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 VV93_v1c29980 f2c363370616b53bf2f7b613ddfa273e 587 SUPERFAMILY SSF52540 13 343 2.99E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29980 f2c363370616b53bf2f7b613ddfa273e 587 Gene3D G3DSA:3.40.50.300 11 351 6.6E-16 T 11-10-2018 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 334 5.8E-108 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 5.1E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 198 208 5.1E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 5.1E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 5.1E-26 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 335 40.615 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 Gene3D G3DSA:3.40.50.620 5 333 1.4E-139 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 SUPERFAMILY SSF52374 5 334 1.13E-91 T 11-10-2018 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 Gene3D G3DSA:1.10.240.10 191 304 1.4E-139 T 11-10-2018 VV93_v1c27860 3e2a0bbe80dc0a0c6b7592f9a3080638 338 Pfam PF00579 tRNA synthetases class I (W and Y) 3 289 2.8E-76 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 VV93_v1c27960 cc77328cc8dc9015a9d416c581a6e988 326 SMART SM00244 18 218 1.3E-45 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c27960 cc77328cc8dc9015a9d416c581a6e988 326 PIRSF PIRSF005651 1 326 4.5E-95 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VV93_v1c27960 cc77328cc8dc9015a9d416c581a6e988 326 SUPERFAMILY SSF117892 56 223 1.57E-21 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily VV93_v1c27960 cc77328cc8dc9015a9d416c581a6e988 326 TIGRFAM TIGR01932 hflC: HflC protein 1 318 5.9E-136 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 VV93_v1c27960 cc77328cc8dc9015a9d416c581a6e988 326 Pfam PF01145 SPFH domain / Band 7 family 22 233 1.0E-28 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c00590 06b1c2577a22ff551bd8b511073661df 279 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.399 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VV93_v1c00590 06b1c2577a22ff551bd8b511073661df 279 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 VV93_v1c00590 06b1c2577a22ff551bd8b511073661df 279 Gene3D G3DSA:3.40.50.150 1 279 3.1E-115 T 11-10-2018 VV93_v1c00590 06b1c2577a22ff551bd8b511073661df 279 SUPERFAMILY SSF53335 9 275 3.1E-96 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c00590 06b1c2577a22ff551bd8b511073661df 279 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 277 5.3E-118 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 VV93_v1c21120 b96752fb69dad3243ecd11ca4f3b4bce 378 Gene3D G3DSA:3.30.750.44 131 214 1.4E-5 T 11-10-2018 VV93_v1c21120 b96752fb69dad3243ecd11ca4f3b4bce 378 Gene3D G3DSA:2.60.40.10 28 126 4.7E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c19910 3cd22e08fd674eb53e4dbf06352a574e 35 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 1.1E-20 T 11-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 VV93_v1c19910 3cd22e08fd674eb53e4dbf06352a574e 35 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.3E-17 T 11-10-2018 IPR012994 Membrane bound YbgT-like VV93_v1c36030 c7bd78728ba0eb5ba976d55de28b33a1 382 SUPERFAMILY SSF48452 57 212 4.41E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c36030 c7bd78728ba0eb5ba976d55de28b33a1 382 Gene3D G3DSA:1.25.40.10 23 253 1.1E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c36030 c7bd78728ba0eb5ba976d55de28b33a1 382 Pfam PF13432 Tetratricopeptide repeat 126 187 3.1E-4 T 11-10-2018 VV93_v1c36620 74e014c0f4960543b718720950e0e212 505 Gene3D G3DSA:3.40.720.10 34 400 2.1E-99 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c36620 74e014c0f4960543b718720950e0e212 505 SUPERFAMILY SSF53649 31 485 2.33E-126 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c36620 74e014c0f4960543b718720950e0e212 505 Gene3D G3DSA:3.30.1120.10 401 461 2.1E-99 T 11-10-2018 VV93_v1c36620 74e014c0f4960543b718720950e0e212 505 Pfam PF00884 Sulfatase 34 359 2.2E-66 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 SUPERFAMILY SSF53633 1 222 3.93E-67 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 48 365 6.5E-77 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 Pfam PF00696 Amino acid kinase family 6 217 2.4E-47 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 Gene3D G3DSA:3.40.1160.10 1 230 8.6E-74 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 PIRSF PIRSF000726 46 305 2.7E-74 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 PIRSF PIRSF000726 1 50 8.7E-14 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 PIRSF PIRSF000726 288 372 3.1 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 VV93_v1c25130 c89d51f2bf787f75223578bdaf051fd6 381 Gene3D G3DSA:3.30.2130.10 233 369 3.4E-5 T 11-10-2018 VV93_v1c36020 910858c9e6d8a3a22c1322ea0ad77ef4 292 Pfam PF00482 Type II secretion system (T2SS), protein F 154 281 2.8E-15 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c17150 7978ab77f103a2ebf0abfe1b1ad7aefd 153 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 108 153 5.0E-20 T 11-10-2018 VV93_v1c17150 7978ab77f103a2ebf0abfe1b1ad7aefd 153 Pfam PF04191 Phospholipid methyltransferase 38 142 1.8E-13 T 11-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 VV93_v1c17150 7978ab77f103a2ebf0abfe1b1ad7aefd 153 Gene3D G3DSA:1.20.120.1630 3 153 7.6E-23 T 11-10-2018 VV93_v1c12510 d497aa384a932f8b00a2ff292121dc94 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 143 411 9.4E-85 T 11-10-2018 VV93_v1c12510 d497aa384a932f8b00a2ff292121dc94 418 Gene3D G3DSA:3.40.50.150 149 418 8.8E-102 T 11-10-2018 VV93_v1c12510 d497aa384a932f8b00a2ff292121dc94 418 PIRSF PIRSF003085 24 418 2.7E-123 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 VV93_v1c12510 d497aa384a932f8b00a2ff292121dc94 418 SUPERFAMILY SSF53335 20 371 3.01E-91 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c09820 57df654fd34e048fc1bedee594a3afd0 323 Gene3D G3DSA:1.10.530.10 66 318 2.1E-91 T 11-10-2018 VV93_v1c09820 57df654fd34e048fc1bedee594a3afd0 323 Gene3D G3DSA:1.10.8.350 34 199 2.1E-91 T 11-10-2018 VV93_v1c09820 57df654fd34e048fc1bedee594a3afd0 323 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 23 322 1.4E-113 T 11-10-2018 IPR011970 Lytic murein transglycosylase VV93_v1c09820 57df654fd34e048fc1bedee594a3afd0 323 SUPERFAMILY SSF53955 12 322 4.78E-100 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c09820 57df654fd34e048fc1bedee594a3afd0 323 Pfam PF13406 Transglycosylase SLT domain 23 319 9.6E-111 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 VV93_v1c22310 1bf1a8c4b3586d909473da87412ff53c 356 Pfam PF01594 AI-2E family transporter 20 345 1.9E-78 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 Gene3D G3DSA:3.30.70.270 151 320 4.0E-54 T 11-10-2018 VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 SUPERFAMILY SSF55073 162 318 1.65E-48 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 Pfam PF00990 Diguanylate cyclase, GGDEF domain 159 314 3.9E-42 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 Gene3D G3DSA:3.30.450.20 12 143 1.3E-29 T 11-10-2018 VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 155 318 7.9E-52 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 SMART SM00267 146 318 1.5E-52 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c16170 f34801394182eb4df99b339a98b6fd95 320 SUPERFAMILY SSF55785 14 93 9.77E-9 T 11-10-2018 IPR035965 PAS domain superfamily VV93_v1c03110 ce531e82a9a89a1296f40152c3bacdf4 352 SUPERFAMILY SSF53756 3 344 2.2E-98 T 11-10-2018 VV93_v1c03110 ce531e82a9a89a1296f40152c3bacdf4 352 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 3 344 5.3E-149 T 11-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 VV93_v1c03110 ce531e82a9a89a1296f40152c3bacdf4 352 Gene3D G3DSA:3.40.50.2000 2 150 1.4E-55 T 11-10-2018 VV93_v1c03110 ce531e82a9a89a1296f40152c3bacdf4 352 Gene3D G3DSA:3.40.50.2000 166 346 3.9E-59 T 11-10-2018 VV93_v1c03110 ce531e82a9a89a1296f40152c3bacdf4 352 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 326 4.1E-72 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 VV93_v1c19390 5a2255bd4f78bb712460b7d62dd25b60 170 Pfam PF03382 Mycoplasma protein of unknown function, DUF285 63 153 7.0E-32 T 11-10-2018 IPR005046 Protein of unknown function DUF285 VV93_v1c19390 5a2255bd4f78bb712460b7d62dd25b60 170 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 103 127 1.1E-5 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19390 5a2255bd4f78bb712460b7d62dd25b60 170 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 38 52 1.4E-4 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19390 5a2255bd4f78bb712460b7d62dd25b60 170 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 53 77 6.6E-6 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c19390 5a2255bd4f78bb712460b7d62dd25b60 170 TIGRFAM TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat 88 101 9.0E-7 T 11-10-2018 IPR011889 Bacterial surface protein 26-residue repeat VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 SUPERFAMILY SSF75217 2 155 7.85E-44 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 156 6.1E-58 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 PIRSF PIRSF029256 1 157 3.0E-66 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 154 32.573 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 Pfam PF00588 SpoU rRNA Methylase family 3 144 6.3E-35 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c28380 5299f93ab04266e167eb59844f0bdf59 157 Gene3D G3DSA:3.40.1280.10 1 157 8.1E-64 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c24950 bdd5b67dc1bb817ccaa36e51339d9787 64 SUPERFAMILY SSF57716 2 62 3.78E-22 T 11-10-2018 VV93_v1c24950 bdd5b67dc1bb817ccaa36e51339d9787 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 59 18.705 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VV93_v1c24950 bdd5b67dc1bb817ccaa36e51339d9787 64 Pfam PF03884 DNA gyrase inhibitor YacG 7 57 6.0E-25 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 VV93_v1c24950 bdd5b67dc1bb817ccaa36e51339d9787 64 Gene3D G3DSA:3.30.50.10 1 64 4.6E-25 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 VV93_v1c39400 77261b250e4e415088de7d990fc792b0 151 Gene3D G3DSA:2.60.40.4150 22 151 1.3E-37 T 11-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily VV93_v1c39400 77261b250e4e415088de7d990fc792b0 151 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 8 146 4.5E-45 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VV93_v1c39400 77261b250e4e415088de7d990fc792b0 151 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 15 144 1.8E-37 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN VV93_v1c09900 e5fcce4905af849fedfe5dbe51037c3d 154 SUPERFAMILY SSF54637 4 143 1.23E-28 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c09900 e5fcce4905af849fedfe5dbe51037c3d 154 PIRSF PIRSF020565 1 154 4.6E-69 T 11-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted VV93_v1c09900 e5fcce4905af849fedfe5dbe51037c3d 154 Gene3D G3DSA:3.10.129.10 3 144 1.8E-23 T 11-10-2018 VV93_v1c13850 71bf512fa951e09b1adcc975a4e7e691 255 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 255 45.544 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 VV93_v1c13850 71bf512fa951e09b1adcc975a4e7e691 255 Pfam PF02654 Cobalamin-5-phosphate synthase 14 247 4.1E-49 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.0E-26 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 Gene3D G3DSA:3.30.1320.10 1 82 1.8E-30 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 SUPERFAMILY SSF54565 1 76 2.62E-27 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 Pfam PF00886 Ribosomal protein S16 8 68 1.1E-22 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c24990 2dacc31f60680994300ac18093cebc3c 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 22.804 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c21750 97031e83330a60d2bf47e06bd584626c 140 Pfam PF04347 Flagellar biosynthesis protein, FliO 58 136 1.3E-18 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VV93_v1c21750 97031e83330a60d2bf47e06bd584626c 140 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 46 113 1.6E-21 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 VV93_v1c02890 0333c45bfd542b3f38e74aa70876bec4 611 PIRSF PIRSF004950 1 611 5.7E-227 T 11-10-2018 IPR012159 Inner membrane protein YejM VV93_v1c02890 0333c45bfd542b3f38e74aa70876bec4 611 SUPERFAMILY SSF53649 245 594 8.21E-59 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c02890 0333c45bfd542b3f38e74aa70876bec4 611 Pfam PF11893 Domain of unknown function (DUF3413) 3 239 1.2E-55 T 11-10-2018 IPR024588 Inner membrane protein YejM, N-terminal VV93_v1c02890 0333c45bfd542b3f38e74aa70876bec4 611 Gene3D G3DSA:3.40.720.10 237 562 4.2E-58 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 VV93_v1c02890 0333c45bfd542b3f38e74aa70876bec4 611 Pfam PF00884 Sulfatase 248 527 2.4E-33 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 SUPERFAMILY SSF50104 116 165 2.51E-5 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 SMART SM00738 1 101 3.3E-29 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 167 46.13 T 11-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 SUPERFAMILY SSF82679 1 104 7.06E-30 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 Gene3D G3DSA:3.30.70.940 1 166 2.2E-52 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 Pfam PF02357 Transcription termination factor nusG 2 94 1.1E-21 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 VV93_v1c09300 d9c1ade862632a7d27523bff8bc598cb 168 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 165 3.1E-62 T 11-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 VV93_v1c11200 33df0e61be32082ce7a0b015f5413b1d 81 Pfam PF02597 ThiS family 4 81 9.3E-24 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 VV93_v1c11200 33df0e61be32082ce7a0b015f5413b1d 81 SUPERFAMILY SSF54285 1 81 2.06E-23 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VV93_v1c11200 33df0e61be32082ce7a0b015f5413b1d 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 3.1E-23 T 11-10-2018 VV93_v1c11200 33df0e61be32082ce7a0b015f5413b1d 81 Gene3D G3DSA:3.10.20.30 1 81 7.3E-27 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 1.2E-60 T 11-10-2018 VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 SUPERFAMILY SSF51735 9 251 1.62E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 Gene3D G3DSA:3.40.50.720 1 252 8.4E-83 T 11-10-2018 VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 1.3E-134 T 11-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c43080 a44955835825c54cf601f6adad968df8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c32490 68e5fd08669473c251f53363d66f0eb6 179 SUPERFAMILY SSF52499 1 179 1.7E-46 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c32490 68e5fd08669473c251f53363d66f0eb6 179 Pfam PF00857 Isochorismatase family 7 149 1.2E-29 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 VV93_v1c32490 68e5fd08669473c251f53363d66f0eb6 179 Gene3D G3DSA:3.40.50.850 1 179 1.3E-47 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 VV93_v1c06840 cf57ce13fe492e59c7fd1216a67b1b72 250 SUPERFAMILY SSF110395 4 247 1.2E-71 T 11-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 VV93_v1c06840 cf57ce13fe492e59c7fd1216a67b1b72 250 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 3 207 30.375 T 11-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 VV93_v1c06840 cf57ce13fe492e59c7fd1216a67b1b72 250 Pfam PF03932 CutC family 4 205 1.5E-83 T 11-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 VV93_v1c06840 cf57ce13fe492e59c7fd1216a67b1b72 250 Gene3D G3DSA:3.20.20.380 3 249 8.4E-87 T 11-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 VV93_v1c11300 dc0a4ef781951d5fa1376a33e7319248 132 Pfam PF03061 Thioesterase superfamily 26 98 2.7E-19 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VV93_v1c11300 dc0a4ef781951d5fa1376a33e7319248 132 Gene3D G3DSA:3.10.129.10 2 132 4.5E-40 T 11-10-2018 VV93_v1c11300 dc0a4ef781951d5fa1376a33e7319248 132 SUPERFAMILY SSF54637 8 129 2.14E-38 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 9.5E-72 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 6.7E-66 T 11-10-2018 IPR023798 Ribosomal protein S7 domain VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 SUPERFAMILY SSF47973 6 149 4.97E-60 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 PIRSF PIRSF002122 3 156 2.3E-63 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 Gene3D G3DSA:1.10.455.10 2 155 2.5E-64 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily VV93_v1c27590 a5cbda310e39f5e8722bb1da7385bf97 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.12 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 VV93_v1c38920 99b5707555860deb00044ca7ffd70d2e 302 Pfam PF01738 Dienelactone hydrolase family 91 299 4.0E-47 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 VV93_v1c38920 99b5707555860deb00044ca7ffd70d2e 302 SUPERFAMILY SSF53474 78 300 1.45E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c38920 99b5707555860deb00044ca7ffd70d2e 302 Gene3D G3DSA:3.40.50.1820 63 300 1.3E-59 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 8.9E-74 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 Gene3D G3DSA:3.30.70.660 105 242 8.9E-48 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 SUPERFAMILY SSF55120 1 255 1.15E-93 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 Pfam PF01416 tRNA pseudouridine synthase 144 244 2.6E-29 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 Pfam PF01416 tRNA pseudouridine synthase 8 102 4.5E-11 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 Gene3D G3DSA:3.30.70.580 1 104 2.2E-40 T 11-10-2018 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 34.771 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c21280 4b7c7719c29d0a85ff5d4723c7f253cb 264 PIRSF PIRSF001430 1 256 6.0E-77 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 VV93_v1c19450 bfccae73e781b88144a1551d384bae23 85 Pfam PF02371 Transposase IS116/IS110/IS902 family 12 83 2.9E-16 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 SUPERFAMILY SSF46689 224 267 1.88E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 SMART SM00342 183 265 1.1E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 Gene3D G3DSA:2.60.120.10 10 102 5.5E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 SUPERFAMILY SSF51182 29 191 8.9E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 220 261 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 Pfam PF12833 Helix-turn-helix domain 191 265 1.1E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c44480 c7600f95ec8305c393e0bc0280c868e9 272 Gene3D G3DSA:1.10.10.60 166 270 1.0E-20 T 11-10-2018 VV93_v1c04820 d2144ee88fcea13135da33c8c951d352 295 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 4 285 1.7E-107 T 11-10-2018 IPR013398 CRISPR-associated protein Csy2 VV93_v1c04820 d2144ee88fcea13135da33c8c951d352 295 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 4 286 4.6E-72 T 11-10-2018 IPR013398 CRISPR-associated protein Csy2 VV93_v1c04300 5436453ded6aa066f8a741457f7ce949 241 SUPERFAMILY SSF69593 5 235 3.66E-56 T 11-10-2018 VV93_v1c04300 5436453ded6aa066f8a741457f7ce949 241 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 3.2E-43 T 11-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 VV93_v1c04300 5436453ded6aa066f8a741457f7ce949 241 Pfam PF01553 Acyltransferase 58 180 2.5E-31 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c04300 5436453ded6aa066f8a741457f7ce949 241 SMART SM00563 67 182 3.7E-39 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c12560 21833bed7e16ded0bf5f62330d9342ca 205 Gene3D G3DSA:1.10.3890.10 1 205 8.5E-78 T 11-10-2018 IPR035932 HflD-like superfamily VV93_v1c12560 21833bed7e16ded0bf5f62330d9342ca 205 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 203 35.984 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD VV93_v1c12560 21833bed7e16ded0bf5f62330d9342ca 205 Pfam PF04356 Protein of unknown function (DUF489) 7 195 9.3E-78 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD VV93_v1c12560 21833bed7e16ded0bf5f62330d9342ca 205 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 194 2.0E-107 T 11-10-2018 VV93_v1c12560 21833bed7e16ded0bf5f62330d9342ca 205 SUPERFAMILY SSF101322 2 204 1.2E-81 T 11-10-2018 IPR035932 HflD-like superfamily VV93_v1c00710 fab8fec2239d5e3d62ae2217eea148a0 405 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 64 392 1.0E-101 T 11-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX VV93_v1c31260 0608d5f7e07a1e680bffb4ac2ee2ddfd 414 SUPERFAMILY SSF53850 23 409 7.76E-62 T 11-10-2018 VV93_v1c31260 0608d5f7e07a1e680bffb4ac2ee2ddfd 414 Gene3D G3DSA:3.40.190.10 49 339 1.5E-73 T 11-10-2018 VV93_v1c31260 0608d5f7e07a1e680bffb4ac2ee2ddfd 414 Pfam PF13416 Bacterial extracellular solute-binding protein 45 345 1.8E-39 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c31260 0608d5f7e07a1e680bffb4ac2ee2ddfd 414 Gene3D G3DSA:3.40.190.10 137 400 1.5E-73 T 11-10-2018 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 Gene3D G3DSA:1.20.1740.10 3 400 1.2E-13 T 11-10-2018 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 8 377 9.4E-114 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 Pfam PF03222 Tryptophan/tyrosine permease family 4 387 9.1E-112 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 18 34 - T 11-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 183 205 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 38 57 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 222 241 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 279 298 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 313 331 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 11 34 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 83 103 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 334 353 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c18170 25d422162286aa2b407375f50dd8f3d3 401 PRINTS PR00166 Aromatic amino acid permease signature 149 169 4.6E-79 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 VV93_v1c31400 e9700738559677a622a37733ab5a03b4 615 SUPERFAMILY SSF49785 456 615 6.38E-29 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily VV93_v1c31400 e9700738559677a622a37733ab5a03b4 615 Gene3D G3DSA:2.60.120.430 474 606 2.3E-16 T 11-10-2018 VV93_v1c31400 e9700738559677a622a37733ab5a03b4 615 SUPERFAMILY SSF51445 85 404 8.68E-43 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c31400 e9700738559677a622a37733ab5a03b4 615 Gene3D G3DSA:3.20.20.80 76 410 1.8E-11 T 11-10-2018 VV93_v1c26730 bab24d1652a5939dbf4ca306edb49a9c 486 SUPERFAMILY SSF53067 57 159 9.84E-10 T 11-10-2018 VV93_v1c26730 bab24d1652a5939dbf4ca306edb49a9c 486 PIRSF PIRSF028153 1 486 4.5E-236 T 11-10-2018 IPR016871 MSHA biogenesis protein, MshI VV93_v1c27420 e9c7f49e5f29226beab216a28a6ad39e 180 SUPERFAMILY SSF110997 105 176 3.27E-16 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c27420 e9c7f49e5f29226beab216a28a6ad39e 180 Pfam PF05036 Sporulation related domain 106 175 4.4E-14 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 VV93_v1c27420 e9c7f49e5f29226beab216a28a6ad39e 180 Gene3D G3DSA:3.30.70.1070 99 178 2.5E-27 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 VV93_v1c29260 4480756181764478d307f7e3a0a9884a 647 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 143 594 5.9E-219 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VV93_v1c29260 4480756181764478d307f7e3a0a9884a 647 Gene3D G3DSA:3.20.20.540 214 527 2.4E-154 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VV93_v1c29260 4480756181764478d307f7e3a0a9884a 647 Pfam PF01964 Radical SAM ThiC family 144 592 2.6E-199 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VV93_v1c29260 4480756181764478d307f7e3a0a9884a 647 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 143 596 100.023 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VV93_v1c29260 4480756181764478d307f7e3a0a9884a 647 Pfam PF13667 ThiC-associated domain 22 104 3.1E-33 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 VV93_v1c13300 2b624a10620d46c3a4210c906443da83 542 Pfam PF08811 Protein of unknown function (DUF1800) 44 535 6.4E-98 T 11-10-2018 IPR014917 Protein of unknown function DUF1800 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 SUPERFAMILY SSF51395 1 312 1.12E-71 T 11-10-2018 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 52.497 T 11-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 Gene3D G3DSA:1.20.225.30 243 314 3.8E-25 T 11-10-2018 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 PIRSF PIRSF006621 1 318 1.6E-75 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 Gene3D G3DSA:3.20.20.70 1 242 2.2E-77 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c18890 213520d6c02a15a916b3d9f6b4f5dc22 318 Pfam PF01207 Dihydrouridine synthase (Dus) 5 300 2.5E-76 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Pfam PF13533 Biotin-lipoyl like 71 110 7.6E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 SUPERFAMILY SSF111369 198 291 1.96E-6 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Gene3D G3DSA:1.10.287.470 178 248 4.9E-16 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 SUPERFAMILY SSF111369 64 173 3.79E-7 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Gene3D G3DSA:2.40.50.100 70 98 3.8E-11 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Gene3D G3DSA:2.40.30.170 282 329 4.9E-16 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 227 321 1.3E-7 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Gene3D G3DSA:1.10.287.470 99 161 3.8E-11 T 11-10-2018 VV93_v1c41740 a50fecd1db6bb674494622a262bb1367 407 Gene3D G3DSA:2.40.50.100 249 281 4.9E-16 T 11-10-2018 VV93_v1c38140 e376b56ae0f5e2024709c9d34d3c000f 369 Pfam PF13729 F plasmid transfer operon, TraF, protein 46 286 1.0E-61 T 11-10-2018 IPR032811 Putative conjugal transfer protein TraF-related VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 Gene3D G3DSA:3.40.50.170 2 212 1.2E-85 T 11-10-2018 VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 1.0E-77 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.875 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 SUPERFAMILY SSF53328 2 194 1.18E-66 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c22410 38cb592cdfa2784f51dd0f0e0ad8e026 212 Pfam PF00551 Formyl transferase 2 182 5.6E-66 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 VV93_v1c42000 4cc2635225a59b8cfde9c6ccc5f05647 168 Pfam PF04170 NlpE N-terminal domain 74 158 1.6E-32 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE VV93_v1c42000 4cc2635225a59b8cfde9c6ccc5f05647 168 Gene3D G3DSA:2.40.128.640 61 168 8.8E-43 T 11-10-2018 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 330 5.0E-107 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 Gene3D G3DSA:3.40.50.300 1 139 4.2E-49 T 11-10-2018 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 Gene3D G3DSA:1.20.272.10 213 338 1.3E-39 T 11-10-2018 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 SUPERFAMILY SSF52540 1 208 3.72E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 Gene3D G3DSA:1.10.8.60 142 212 1.2E-18 T 11-10-2018 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 328 3.3E-34 T 11-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 SUPERFAMILY SSF48019 211 332 2.55E-30 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 VV93_v1c08460 f3276bb3661eb3a6b439b2cee3092f38 341 Pfam PF06144 DNA polymerase III, delta subunit 20 189 7.0E-50 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 VV93_v1c35120 563562b528855a7051d0cb1143700f94 282 Pfam PF13181 Tetratricopeptide repeat 220 252 1.3E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c35120 563562b528855a7051d0cb1143700f94 282 Gene3D G3DSA:1.25.40.10 97 265 3.2E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c35120 563562b528855a7051d0cb1143700f94 282 SMART SM00028 186 219 22.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c35120 563562b528855a7051d0cb1143700f94 282 SMART SM00028 220 253 0.0027 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c35120 563562b528855a7051d0cb1143700f94 282 SUPERFAMILY SSF48452 172 255 1.22E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c15670 f1431420457592e8b9018db436090bc5 56 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 46 2.0E-15 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type VV93_v1c15670 f1431420457592e8b9018db436090bc5 56 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 7.7E-21 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 SUPERFAMILY SSF53850 89 287 1.38E-37 T 11-10-2018 VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 Pfam PF03466 LysR substrate binding domain 88 286 1.6E-39 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.8E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 Gene3D G3DSA:3.40.190.290 90 290 7.0E-73 T 11-10-2018 VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 Gene3D G3DSA:1.10.10.10 1 89 1.6E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c21220 d49f707f383e829f6dad93dc1e5b06a2 291 SUPERFAMILY SSF46785 1 83 1.04E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c18510 f5ace4cee823664a43695ab06241ef76 155 SUPERFAMILY SSF55729 1 140 8.47E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c18510 f5ace4cee823664a43695ab06241ef76 155 Gene3D G3DSA:3.40.630.30 2 151 1.7E-15 T 11-10-2018 VV93_v1c18510 f5ace4cee823664a43695ab06241ef76 155 Pfam PF00583 Acetyltransferase (GNAT) family 20 133 3.3E-8 T 11-10-2018 IPR000182 GNAT domain VV93_v1c26450 11664c5354e9d5d9bf5a430c67eae093 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 1.9E-52 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 VV93_v1c26450 11664c5354e9d5d9bf5a430c67eae093 129 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 VV93_v1c26450 11664c5354e9d5d9bf5a430c67eae093 129 Gene3D G3DSA:3.30.1330.40 2 129 5.8E-48 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c26450 11664c5354e9d5d9bf5a430c67eae093 129 SUPERFAMILY SSF55298 2 128 2.36E-44 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 VV93_v1c26450 11664c5354e9d5d9bf5a430c67eae093 129 Pfam PF01042 Endoribonuclease L-PSP 8 127 2.0E-43 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 437 2.7E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 Pfam PF08521 Two-component sensor kinase N-terminal 2 151 1.6E-7 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 SMART SM00387 336 445 1.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 SUPERFAMILY SSF55874 300 441 4.85E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 Gene3D G3DSA:1.10.287.130 179 294 5.9E-21 T 11-10-2018 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 SMART SM00388 228 293 4.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 SUPERFAMILY SSF47384 211 292 1.88E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 230 292 6.7E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 5.9E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 423 5.9E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 5.9E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 VV93_v1c31150 69548b8eda5aabee3dd122321d504c36 446 Gene3D G3DSA:3.30.565.10 297 445 2.2E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c02080 3f59f211bd5c51fc4e3483d577057c51 184 Gene3D G3DSA:3.90.79.10 7 183 9.1E-48 T 11-10-2018 VV93_v1c02080 3f59f211bd5c51fc4e3483d577057c51 184 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c02080 3f59f211bd5c51fc4e3483d577057c51 184 SUPERFAMILY SSF55811 7 178 4.87E-38 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c02080 3f59f211bd5c51fc4e3483d577057c51 184 Pfam PF00293 NUDIX domain 47 155 5.6E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c27630 232d9f301533ab21513031665e0cfcaa 131 SUPERFAMILY SSF75169 6 131 5.1E-38 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c27630 232d9f301533ab21513031665e0cfcaa 131 Gene3D G3DSA:3.40.1260.10 1 131 9.3E-54 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c27630 232d9f301533ab21513031665e0cfcaa 131 Pfam PF02635 DsrE/DsrF-like family 6 131 8.1E-29 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VV93_v1c27630 232d9f301533ab21513031665e0cfcaa 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 131 4.9E-55 T 11-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 VV93_v1c38180 e0967fd2fd840f4e60c8869838de2d91 464 PIRSF PIRSF000204 1 464 3.4E-235 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 VV93_v1c38180 e0967fd2fd840f4e60c8869838de2d91 464 SUPERFAMILY SSF52467 291 464 1.12E-79 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily VV93_v1c38180 e0967fd2fd840f4e60c8869838de2d91 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 462 8.0E-202 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 VV93_v1c38180 e0967fd2fd840f4e60c8869838de2d91 464 Gene3D G3DSA:3.40.50.1220 288 464 1.4E-89 T 11-10-2018 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 SUPERFAMILY SSF49863 567 667 1.65E-12 T 11-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 Gene3D G3DSA:2.70.98.10 310 559 1.1E-65 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 Gene3D G3DSA:2.60.220.10 560 665 1.6E-9 T 11-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 313 552 3.7E-65 T 11-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 SUPERFAMILY SSF74650 309 564 3.77E-75 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 Gene3D G3DSA:1.50.10.100 15 294 2.2E-57 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 29 290 5.4E-31 T 11-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical VV93_v1c44830 c62a6a25faf92c42118afc9834a774af 679 SUPERFAMILY SSF48230 4 334 8.24E-83 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 VV93_v1c37440 f1c7a29d751d55ede2bcdf222c2b1037 825 Pfam PF12262 Bacterial virulence factor lipase N-terminal 1 278 8.1E-77 T 11-10-2018 IPR025920 Bacterial virulence factor lipase, N-terminal domain VV93_v1c37440 f1c7a29d751d55ede2bcdf222c2b1037 825 TIGRFAM TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family 1 804 2.4E-163 T 11-10-2018 IPR020009 Extracellular lipase, Pla-1/cef family VV93_v1c37440 f1c7a29d751d55ede2bcdf222c2b1037 825 SUPERFAMILY SSF53474 462 738 1.27E-9 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c18060 9ee0181d37ccde8cb520e9013d84170e 191 Pfam PF10531 SLBB domain 119 162 2.4E-12 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 VV93_v1c18060 9ee0181d37ccde8cb520e9013d84170e 191 Gene3D G3DSA:3.30.1950.10 46 117 7.2E-22 T 11-10-2018 VV93_v1c18060 9ee0181d37ccde8cb520e9013d84170e 191 Gene3D G3DSA:3.10.560.10 29 186 7.2E-22 T 11-10-2018 VV93_v1c18060 9ee0181d37ccde8cb520e9013d84170e 191 Pfam PF02563 Polysaccharide biosynthesis/export protein 40 113 4.1E-18 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 SUPERFAMILY SSF82689 435 526 1.44E-6 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 Gene3D G3DSA:2.30.30.60 383 432 3.3E-11 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 Pfam PF00924 Mechanosensitive ion channel 325 526 1.8E-42 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 Gene3D G3DSA:3.30.70.100 433 528 2.4E-9 T 11-10-2018 VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 SUPERFAMILY SSF50182 367 432 6.87E-13 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 SUPERFAMILY SSF82861 282 365 2.75E-12 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 VV93_v1c43180 3db8214d77a9a88b263fdf5763e56a26 537 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 396 430 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 VV93_v1c17850 0ba9f10e6e441e72ef09bd0bc106e3fd 210 Pfam PF10816 Domain of unknown function (DUF2760) 87 209 1.1E-53 T 11-10-2018 IPR021212 Domain of unknown function DUF2760 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 Gene3D G3DSA:3.40.190.290 94 295 2.0E-36 T 11-10-2018 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 SUPERFAMILY SSF53850 92 296 6.4E-41 T 11-10-2018 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 Pfam PF03466 LysR substrate binding domain 92 293 3.1E-46 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.2E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 SUPERFAMILY SSF46785 5 113 2.45E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23330 afc4db6020bfbf8323f3add8c30e61ed 298 Gene3D G3DSA:1.10.10.10 4 91 5.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c37400 d637b2a2cd6abb7734726f15bcac15c9 298 SUPERFAMILY SSF103481 47 145 8.5E-17 T 11-10-2018 VV93_v1c37400 d637b2a2cd6abb7734726f15bcac15c9 298 Pfam PF00892 EamA-like transporter family 161 287 6.4E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c37400 d637b2a2cd6abb7734726f15bcac15c9 298 Pfam PF00892 EamA-like transporter family 12 142 6.8E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c37400 d637b2a2cd6abb7734726f15bcac15c9 298 SUPERFAMILY SSF103481 194 291 3.53E-14 T 11-10-2018 VV93_v1c32650 93c9996f6c0d4ab4397c595699c567af 155 Pfam PF03734 L,D-transpeptidase catalytic domain 19 153 7.1E-17 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 VV93_v1c32650 93c9996f6c0d4ab4397c595699c567af 155 Gene3D G3DSA:2.40.440.10 4 155 2.1E-16 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VV93_v1c32650 93c9996f6c0d4ab4397c595699c567af 155 SUPERFAMILY SSF141523 19 153 8.11E-23 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like VV93_v1c06330 63219f1a8bf43d36efdea6ead4f0a678 494 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 328 437 2.6E-21 T 11-10-2018 IPR025299 CstA, C-terminal domain VV93_v1c06330 63219f1a8bf43d36efdea6ead4f0a678 494 Pfam PF02554 Carbon starvation protein CstA 4 144 2.4E-33 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 VV93_v1c06330 63219f1a8bf43d36efdea6ead4f0a678 494 Pfam PF02554 Carbon starvation protein CstA 148 293 2.7E-20 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 VV93_v1c24090 4d8da69b9e26578aee913c4783336fee 167 Pfam PF13527 Acetyltransferase (GNAT) domain 4 123 3.7E-10 T 11-10-2018 VV93_v1c24090 4d8da69b9e26578aee913c4783336fee 167 SUPERFAMILY SSF55729 1 130 3.72E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c24090 4d8da69b9e26578aee913c4783336fee 167 Gene3D G3DSA:3.40.630.30 1 167 3.4E-46 T 11-10-2018 VV93_v1c43170 b43cd8de8e41d2bed3f6271817cd4a11 167 Gene3D G3DSA:3.40.630.30 8 145 1.3E-19 T 11-10-2018 VV93_v1c43170 b43cd8de8e41d2bed3f6271817cd4a11 167 SUPERFAMILY SSF55729 35 143 4.9E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c43170 b43cd8de8e41d2bed3f6271817cd4a11 167 Pfam PF00583 Acetyltransferase (GNAT) family 37 122 1.1E-13 T 11-10-2018 IPR000182 GNAT domain VV93_v1c13930 441176de1cbbc6601c65229cbb54c0e7 186 Pfam PF07209 Protein of unknown function (DUF1415) 10 178 7.6E-66 T 11-10-2018 IPR009858 Protein of unknown function DUF1415 VV93_v1c16980 a0870b3469c1e6289c1b19ce6c8e17d5 69 Pfam PF03692 Putative zinc- or iron-chelating domain 22 56 7.6E-8 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 SMART SM01329 7 356 1.4E-202 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 248 267 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 356 1.4E-136 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 Gene3D G3DSA:3.40.718.10 1 363 6.9E-157 T 11-10-2018 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 356 5.5E-164 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 SUPERFAMILY SSF53659 4 360 1.54E-123 T 11-10-2018 VV93_v1c04540 226f03dad3f6ed1770699314d3875584 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 6 360 51.018 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 Gene3D G3DSA:3.40.50.300 714 1012 4.6E-22 T 11-10-2018 VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 Gene3D G3DSA:3.40.50.300 1 269 1.5E-41 T 11-10-2018 VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 SUPERFAMILY SSF52540 26 1000 2.61E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 SUPERFAMILY SSF52540 648 1001 3.96E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 Pfam PF13476 AAA domain 5 359 1.2E-21 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain VV93_v1c35900 b9440ee8a97dea0105aaf7e7cbd795bd 1021 Pfam PF13558 Putative exonuclease SbcCD, C subunit 909 971 8.0E-12 T 11-10-2018 VV93_v1c34330 ae1d9652e06dd004a4843f96784dd484 185 Gene3D G3DSA:3.40.630.30 1 174 2.3E-42 T 11-10-2018 VV93_v1c34330 ae1d9652e06dd004a4843f96784dd484 185 SUPERFAMILY SSF55729 6 173 1.4E-38 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c34330 ae1d9652e06dd004a4843f96784dd484 185 Pfam PF13302 Acetyltransferase (GNAT) domain 29 149 3.1E-22 T 11-10-2018 IPR000182 GNAT domain VV93_v1c40570 d3ed9d316abf68b16970ddb7c1ee3161 140 Pfam PF13673 Acetyltransferase (GNAT) domain 40 122 2.4E-11 T 11-10-2018 IPR000182 GNAT domain VV93_v1c40570 d3ed9d316abf68b16970ddb7c1ee3161 140 Gene3D G3DSA:3.40.630.30 36 139 2.6E-25 T 11-10-2018 VV93_v1c40570 d3ed9d316abf68b16970ddb7c1ee3161 140 SUPERFAMILY SSF55729 33 139 9.49E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 Gene3D G3DSA:3.20.140.10 2 427 5.1E-165 T 11-10-2018 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 SUPERFAMILY SSF51690 129 410 4.12E-86 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 PIRSF PIRSF000484 1 400 2.3E-72 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 413 43.677 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 SUPERFAMILY SSF54675 8 146 2.71E-34 T 11-10-2018 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 178 411 1.5E-77 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 VV93_v1c17290 f0792b6a047f8e5c4ad616bfa6362f3e 437 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 411 1.5E-156 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 VV93_v1c43680 399bdf141a25a151f58c698d2f3d04ef 82 SUPERFAMILY SSF101744 1 81 4.76E-23 T 11-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 VV93_v1c43680 399bdf141a25a151f58c698d2f3d04ef 82 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 1 80 3.4E-29 T 11-10-2018 IPR009778 Modulator of Rho-dependent transcription termination VV93_v1c43680 399bdf141a25a151f58c698d2f3d04ef 82 Gene3D G3DSA:2.30.30.400 2 80 2.9E-15 T 11-10-2018 IPR038626 Rof-like superfamily VV93_v1c32800 c4f2a50d2d413ea224caa86fddf41472 170 Gene3D G3DSA:2.60.40.200 20 170 1.7E-47 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 VV93_v1c32800 c4f2a50d2d413ea224caa86fddf41472 170 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 158 169 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 VV93_v1c32800 c4f2a50d2d413ea224caa86fddf41472 170 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 32 169 8.1E-33 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 VV93_v1c32800 c4f2a50d2d413ea224caa86fddf41472 170 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 62 72 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 VV93_v1c32800 c4f2a50d2d413ea224caa86fddf41472 170 SUPERFAMILY SSF49329 28 170 6.02E-49 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 VV93_v1c32690 98bfc1ef5d4ca7d32b8b3a813843826b 716 Gene3D G3DSA:2.40.170.20 175 707 4.5E-31 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VV93_v1c32690 98bfc1ef5d4ca7d32b8b3a813843826b 716 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 1.2E-19 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain VV93_v1c32690 98bfc1ef5d4ca7d32b8b3a813843826b 716 SUPERFAMILY SSF56935 42 704 4.76E-77 T 11-10-2018 VV93_v1c32690 98bfc1ef5d4ca7d32b8b3a813843826b 716 Gene3D G3DSA:2.170.130.10 32 172 2.1E-29 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily VV93_v1c24590 2e9362a2dac63f1dd47c41a6746e9ab3 337 SUPERFAMILY SSF53850 24 332 9.51E-78 T 11-10-2018 VV93_v1c24590 2e9362a2dac63f1dd47c41a6746e9ab3 337 Gene3D G3DSA:3.40.190.10 25 297 3.8E-127 T 11-10-2018 VV93_v1c24590 2e9362a2dac63f1dd47c41a6746e9ab3 337 Gene3D G3DSA:3.40.190.10 120 328 3.8E-127 T 11-10-2018 VV93_v1c24590 2e9362a2dac63f1dd47c41a6746e9ab3 337 Pfam PF13343 Bacterial extracellular solute-binding protein 72 295 3.9E-21 T 11-10-2018 VV93_v1c24590 2e9362a2dac63f1dd47c41a6746e9ab3 337 PIRSF PIRSF002825 1 337 1.2E-108 T 11-10-2018 IPR026045 Ferric binding protein VV93_v1c15970 5ca2ffa994b3947a8dfdfb40ad6aad94 152 Pfam PF11749 Protein of unknown function (DUF3305) 45 142 4.9E-22 T 11-10-2018 IPR021736 Protein of unknown function DUF3305 VV93_v1c32720 6f1eb6b29d28fc11becbeecb9e418867 399 Pfam PF11301 Protein of unknown function (DUF3103) 40 397 4.2E-182 T 11-10-2018 IPR021452 Protein of unknown function DUF3103 VV93_v1c30720 35ed2662e5ca7f42e752e32139341195 292 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 284 7.5E-104 T 11-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VV93_v1c30720 35ed2662e5ca7f42e752e32139341195 292 Pfam PF08543 Phosphomethylpyrimidine kinase 75 260 5.9E-21 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 VV93_v1c30720 35ed2662e5ca7f42e752e32139341195 292 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 284 53.341 T 11-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 VV93_v1c30720 35ed2662e5ca7f42e752e32139341195 292 SUPERFAMILY SSF53613 2 275 1.06E-69 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c30720 35ed2662e5ca7f42e752e32139341195 292 Gene3D G3DSA:3.40.1190.20 1 290 3.9E-87 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c18720 0cc0bb2e660c651c7aabce81aa7e0646 428 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 424 1.2E-107 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c18720 0cc0bb2e660c651c7aabce81aa7e0646 428 PIRSF PIRSF006066 1 427 5.5E-75 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c18720 0cc0bb2e660c651c7aabce81aa7e0646 428 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 423 2.1E-100 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 Gene3D G3DSA:3.40.50.720 3 318 1.5E-132 T 11-10-2018 VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 Gene3D G3DSA:3.40.50.720 103 298 1.5E-132 T 11-10-2018 VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 328 2.6E-34 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 SUPERFAMILY SSF51735 103 299 1.17E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 SUPERFAMILY SSF52283 1 136 6.8E-42 T 11-10-2018 VV93_v1c19150 82fb23314a8e5b743f3e9709ddf887c0 331 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 298 6.3E-51 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c12120 f4d64328eee3b5070106d260b7b5cca5 227 PIRSF PIRSF037290 1 227 5.0E-80 T 11-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 VV93_v1c12120 f4d64328eee3b5070106d260b7b5cca5 227 SUPERFAMILY SSF52540 47 157 1.06E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12120 f4d64328eee3b5070106d260b7b5cca5 227 Gene3D G3DSA:3.40.50.300 51 156 3.0E-27 T 11-10-2018 VV93_v1c41060 eee579f531cc1f33600bfc807059950b 172 Pfam PF13207 AAA domain 9 122 2.7E-18 T 11-10-2018 VV93_v1c41060 eee579f531cc1f33600bfc807059950b 172 Gene3D G3DSA:3.40.50.300 2 160 2.3E-36 T 11-10-2018 VV93_v1c41060 eee579f531cc1f33600bfc807059950b 172 SUPERFAMILY SSF52540 1 140 1.42E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 Pfam PF17200 Single Cache domain 2 45 192 6.6E-45 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 SMART SM01049 42 133 4.8E-33 T 11-10-2018 IPR033480 Single Cache domain 2 VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 PIRSF PIRSF037314 1 451 1.1E-183 T 11-10-2018 IPR017171 Signal transduction histidine kinase, MctS VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 445 1.3E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 SUPERFAMILY SSF55874 322 443 3.67E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 Pfam PF07730 Histidine kinase 250 315 3.7E-15 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 SMART SM00387 353 447 6.4E-5 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 Gene3D G3DSA:3.30.565.10 313 447 7.9E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VV93_v1c18710 601ac0cba1697987097c6e0123a3381e 451 Gene3D G3DSA:3.30.450.20 28 203 1.1E-48 T 11-10-2018 VV93_v1c16910 d41dd566576d3ab662a4d7ab3ce178c4 129 Gene3D G3DSA:3.10.180.10 1 125 4.2E-31 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c16910 d41dd566576d3ab662a4d7ab3ce178c4 129 SUPERFAMILY SSF54593 2 125 1.25E-16 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c44720 1f608758b1898a0ce3366e04b98cc52d 355 Pfam PF13483 Beta-lactamase superfamily domain 42 282 2.2E-12 T 11-10-2018 VV93_v1c44720 1f608758b1898a0ce3366e04b98cc52d 355 SUPERFAMILY SSF56281 36 290 6.96E-27 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c44720 1f608758b1898a0ce3366e04b98cc52d 355 Gene3D G3DSA:3.60.15.10 3 355 5.8E-110 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VV93_v1c42920 32717dc848944e38ae2dcb0d0ec8b725 242 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 15 242 1.6E-31 T 11-10-2018 IPR009331 Oligogalacturonate-specific porin VV93_v1c42920 32717dc848944e38ae2dcb0d0ec8b725 242 Gene3D G3DSA:2.40.160.40 22 242 1.3E-47 T 11-10-2018 VV93_v1c42920 32717dc848944e38ae2dcb0d0ec8b725 242 SUPERFAMILY SSF56935 47 186 4.76E-7 T 11-10-2018 VV93_v1c03410 941614f5a0dec86d7314a077daf3d729 99 Gene3D G3DSA:3.40.1440.10 3 98 8.5E-23 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c03410 941614f5a0dec86d7314a077daf3d729 99 Pfam PF01541 GIY-YIG catalytic domain 5 77 4.2E-13 T 11-10-2018 IPR000305 GIY-YIG endonuclease VV93_v1c03410 941614f5a0dec86d7314a077daf3d729 99 SUPERFAMILY SSF82771 3 89 1.19E-19 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c07770 ac6ce3a4245d36a366ecd10d1f485781 222 PIRSF PIRSF004525 8 222 1.6E-8 T 11-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted VV93_v1c40420 99a78b63f7596d9fd725755f90728d98 202 Gene3D G3DSA:2.60.40.420 42 137 3.8E-11 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c40420 99a78b63f7596d9fd725755f90728d98 202 SUPERFAMILY SSF49503 57 169 1.29E-15 T 11-10-2018 IPR008972 Cupredoxin VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 Gene3D G3DSA:3.40.190.10 115 219 1.8E-94 T 11-10-2018 VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 Pfam PF03180 NLPA lipoprotein 33 269 3.9E-98 T 11-10-2018 IPR004872 Lipoprotein NlpA family VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 PIRSF PIRSF002854 1 269 1.7E-100 T 11-10-2018 IPR004872 Lipoprotein NlpA family VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 SUPERFAMILY SSF53850 32 269 1.21E-80 T 11-10-2018 VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 15 269 1.6E-124 T 11-10-2018 IPR004872 Lipoprotein NlpA family VV93_v1c08270 5244b902bde75b1999e4dd8112840d48 269 Gene3D G3DSA:3.40.190.10 34 263 1.8E-94 T 11-10-2018 VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 122 270 2.0E-16 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 Pfam PF12793 Sugar transport-related sRNA regulator N-term 1 73 1.5E-8 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 SUPERFAMILY SSF53850 79 510 9.23E-45 T 11-10-2018 VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 PIRSF PIRSF002741 438 514 0.14 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 PIRSF PIRSF002741 43 323 5.5E-27 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c41330 23ada7614292f41ea545400439e7742d 514 Gene3D G3DSA:3.40.190.10 82 330 3.4E-31 T 11-10-2018 VV93_v1c31640 844045e76657b4f73ca56de1586a2a32 457 Gene3D G3DSA:1.20.1250.20 12 429 3.1E-18 T 11-10-2018 VV93_v1c31640 844045e76657b4f73ca56de1586a2a32 457 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 61 86 - T 11-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 VV93_v1c31640 844045e76657b4f73ca56de1586a2a32 457 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 10 439 1.3E-136 T 11-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 VV93_v1c31640 844045e76657b4f73ca56de1586a2a32 457 Pfam PF13347 MFS/sugar transport protein 12 433 1.0E-93 T 11-10-2018 VV93_v1c31640 844045e76657b4f73ca56de1586a2a32 457 SUPERFAMILY SSF103473 20 434 7.19E-30 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c42870 c2253c89369d5c74e87eb3025ffb3ae2 129 Gene3D G3DSA:3.30.310.70 1 127 1.5E-46 T 11-10-2018 IPR035923 TT1751-like domain superfamily VV93_v1c42870 c2253c89369d5c74e87eb3025ffb3ae2 129 Pfam PF03625 Domain of unknown function DUF302 34 97 3.7E-27 T 11-10-2018 IPR005180 Domain of unknown function DUF302 VV93_v1c42870 c2253c89369d5c74e87eb3025ffb3ae2 129 SUPERFAMILY SSF103247 1 126 2.35E-36 T 11-10-2018 IPR035923 TT1751-like domain superfamily VV93_v1c42870 c2253c89369d5c74e87eb3025ffb3ae2 129 PIRSF PIRSF021774 1 129 2.1E-46 T 11-10-2018 IPR016796 Uncharacterised conserved protein UCP021774 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 2 598 53.29 T 11-10-2018 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 SUPERFAMILY SSF143975 3 408 4.18E-130 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 Pfam PF00920 Dehydratase family 68 594 5.6E-146 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 Gene3D G3DSA:3.50.30.80 418 561 3.4E-48 T 11-10-2018 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 596 1.7E-248 T 11-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 VV93_v1c00520 8accda311ac10135670e67326c2073f8 598 SUPERFAMILY SSF52016 418 596 1.65E-51 T 11-10-2018 VV93_v1c05590 8bf2d7e33bbd431155622387886e4bb1 255 Gene3D G3DSA:3.10.20.310 55 123 6.5E-25 T 11-10-2018 VV93_v1c05590 8bf2d7e33bbd431155622387886e4bb1 255 Gene3D G3DSA:3.40.50.11690 125 252 5.3E-37 T 11-10-2018 VV93_v1c05590 8bf2d7e33bbd431155622387886e4bb1 255 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 23 247 22.339 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 VV93_v1c05590 8bf2d7e33bbd431155622387886e4bb1 255 Pfam PF03799 Cell division protein FtsQ 127 239 2.2E-24 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB VV93_v1c05590 8bf2d7e33bbd431155622387886e4bb1 255 Pfam PF08478 POTRA domain, FtsQ-type 54 123 2.3E-18 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 Gene3D G3DSA:3.40.50.300 269 455 1.3E-58 T 11-10-2018 VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 SMART SM00382 273 440 2.2E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 SUPERFAMILY SSF52540 270 462 9.85E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 SMART SM00962 274 467 1.8E-65 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 Pfam PF00448 SRP54-type protein, GTPase domain 276 464 5.3E-39 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 155 362 1.2E-69 T 11-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 VV93_v1c21690 74aa0f535b6f1035bc68965db9187458 487 Gene3D G3DSA:1.20.120.1380 249 458 1.3E-58 T 11-10-2018 VV93_v1c05560 58b689758e8ff2c4ed708d54a6286026 397 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 338 362 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05560 58b689758e8ff2c4ed708d54a6286026 397 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 23 379 4.2E-129 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05560 58b689758e8ff2c4ed708d54a6286026 397 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 21 390 41.606 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c05560 58b689758e8ff2c4ed708d54a6286026 397 Pfam PF01098 Cell cycle protein 26 380 5.3E-114 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 Pfam PF00480 ROK family 2 300 3.2E-73 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 ProSitePatterns PS01125 ROK family signature. 130 157 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 Gene3D G3DSA:3.30.420.40 4 297 4.3E-103 T 11-10-2018 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 303 65.673 T 11-10-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 SUPERFAMILY SSF53067 1 299 7.21E-57 T 11-10-2018 VV93_v1c16110 63182546e87487cb3bc7d9bf2b729d54 303 Gene3D G3DSA:3.30.420.40 119 290 4.3E-103 T 11-10-2018 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Gene3D G3DSA:1.10.3090.10 151 433 9.0E-44 T 11-10-2018 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 SUPERFAMILY SSF81301 23 148 3.6E-33 T 11-10-2018 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 SUPERFAMILY SSF81891 149 430 2.49E-52 T 11-10-2018 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Hamap MF_01262 CCA-adding enzyme [cca]. 30 430 42.32 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 PIRSF PIRSF000813 30 436 5.5E-200 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Gene3D G3DSA:3.30.460.10 17 150 7.1E-30 T 11-10-2018 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Hamap MF_01261 Multifunctional CCA protein [cca]. 30 436 54.01 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Pfam PF01966 HD domain 258 355 3.9E-6 T 11-10-2018 IPR006674 HD domain VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 178 241 9.5E-12 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VV93_v1c05130 9584ab31b3d7607fe55588de58085576 436 Pfam PF01743 Poly A polymerase head domain 32 151 2.0E-19 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 228 5.1E-85 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 Pfam PF01578 Cytochrome C assembly protein 16 184 1.1E-31 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c21560 e88e2b0991173370460473f0e14bc4e3 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 2.6E-65 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 VV93_v1c19860 cc1624df6a854e4d78b57c4632397526 355 SUPERFAMILY SSF74653 265 355 2.16E-15 T 11-10-2018 VV93_v1c19860 cc1624df6a854e4d78b57c4632397526 355 Pfam PF06519 TolA C-terminal 254 352 7.7E-29 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VV93_v1c19860 cc1624df6a854e4d78b57c4632397526 355 Gene3D G3DSA:3.30.1150.10 254 353 1.6E-23 T 11-10-2018 VV93_v1c19860 cc1624df6a854e4d78b57c4632397526 355 TIGRFAM TIGR02794 tolA_full: protein TolA 14 354 4.7E-92 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 VV93_v1c02720 d2923d109ff2072f5a6f2e397d766ec9 213 Gene3D G3DSA:3.40.50.2020 1 213 2.8E-79 T 11-10-2018 VV93_v1c02720 d2923d109ff2072f5a6f2e397d766ec9 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 4.6E-70 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c02720 d2923d109ff2072f5a6f2e397d766ec9 213 Pfam PF00156 Phosphoribosyl transferase domain 43 161 4.1E-12 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c02720 d2923d109ff2072f5a6f2e397d766ec9 213 SUPERFAMILY SSF53271 2 211 1.02E-49 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c02720 d2923d109ff2072f5a6f2e397d766ec9 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.153 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 VV93_v1c07320 7ee98e5a8404bb1b1033cd2ec38b4b74 196 Pfam PF09335 SNARE associated Golgi protein 37 145 4.4E-13 T 11-10-2018 IPR032816 SNARE associated Golgi protein VV93_v1c26600 fad8348d8ba2d4f29bab5bd01305fdf8 229 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 4.3E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26600 fad8348d8ba2d4f29bab5bd01305fdf8 229 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 1.2E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26600 fad8348d8ba2d4f29bab5bd01305fdf8 229 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c15760 79d1518eeb3fb15453bade9f05d1bdcf 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 282 7.7E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c15760 79d1518eeb3fb15453bade9f05d1bdcf 285 Gene3D G3DSA:1.10.3720.10 6 277 7.6E-54 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c15760 79d1518eeb3fb15453bade9f05d1bdcf 285 SUPERFAMILY SSF161098 9 274 2.49E-54 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 Gene3D G3DSA:2.130.10.10 246 326 3.2E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 Gene3D G3DSA:2.130.10.10 113 245 5.6E-24 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 192 230 0.036 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 25 62 470.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 285 323 260.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 233 274 0.18 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 150 189 6.0E-4 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SMART SM00320 68 106 240.0 T 11-10-2018 IPR001680 WD40 repeat GO:0005515 VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 SUPERFAMILY SSF50998 27 317 6.43E-44 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 176 190 - T 11-10-2018 IPR019775 WD40 repeat, conserved site VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 Pfam PF13360 PQQ-like domain 171 286 4.8E-6 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat VV93_v1c27660 96eafc57de33e5e90585a0e7c77ecdd9 326 Gene3D G3DSA:2.130.10.10 34 112 6.4E-6 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 VV93_v1c15490 8033efb11d16d6a8cbf16e8fa747157f 110 Pfam PF07459 CTX phage RstB protein 2 104 1.0E-25 T 11-10-2018 IPR010008 Vibrio phage CTX, RstB VV93_v1c37860 8033efb11d16d6a8cbf16e8fa747157f 110 Pfam PF07459 CTX phage RstB protein 2 104 1.0E-25 T 11-10-2018 IPR010008 Vibrio phage CTX, RstB VV93_v1c17940 ef487562ea518692358b6a43e0c69996 492 SUPERFAMILY SSF51445 88 282 2.45E-12 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c17940 ef487562ea518692358b6a43e0c69996 492 Pfam PF02449 Beta-galactosidase 87 200 2.1E-7 T 11-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 VV93_v1c17940 ef487562ea518692358b6a43e0c69996 492 Pfam PF16116 Domain of unknown function (DUF4832) 310 470 2.4E-17 T 11-10-2018 IPR032267 Domain of unknown function DUF4832 VV93_v1c17940 ef487562ea518692358b6a43e0c69996 492 Gene3D G3DSA:3.20.20.80 74 240 2.6E-15 T 11-10-2018 VV93_v1c43950 511cca6d3f424bb1ecf44b6b262c4619 183 ProDom PD105609 PLASMID YQCF RSP1132 26 179 1.0E-5 T 11-10-2018 VV93_v1c43950 511cca6d3f424bb1ecf44b6b262c4619 183 Pfam PF05076 Suppressor of fused protein (SUFU) 25 179 2.0E-16 T 11-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 VV93_v1c00210 a4c52c4b915a9e858c20f8dd66f47c1c 174 SUPERFAMILY SSF52218 2 171 1.62E-30 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c00210 a4c52c4b915a9e858c20f8dd66f47c1c 174 Gene3D G3DSA:3.40.50.360 1 173 2.4E-11 T 11-10-2018 IPR029039 Flavoprotein-like superfamily VV93_v1c00210 a4c52c4b915a9e858c20f8dd66f47c1c 174 Pfam PF12724 Flavodoxin domain 4 152 2.9E-49 T 11-10-2018 IPR026816 Flavodoxin domain VV93_v1c34440 96d419bdac7d0de21f8a4c77c5b6e9ef 132 Gene3D G3DSA:3.30.300.20 35 132 7.1E-23 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c34440 96d419bdac7d0de21f8a4c77c5b6e9ef 132 Pfam PF02566 OsmC-like protein 29 127 7.3E-16 T 11-10-2018 IPR003718 OsmC/Ohr family VV93_v1c34440 96d419bdac7d0de21f8a4c77c5b6e9ef 132 SUPERFAMILY SSF82784 1 131 1.44E-38 T 11-10-2018 IPR036102 OsmC/Ohr superfamily VV93_v1c34440 96d419bdac7d0de21f8a4c77c5b6e9ef 132 Gene3D G3DSA:2.20.25.10 1 34 7.1E-20 T 11-10-2018 VV93_v1c21060 191bf719d63fbbe0d66a89c3c74db822 145 PIRSF PIRSF006173 1 144 5.5E-65 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VV93_v1c21060 191bf719d63fbbe0d66a89c3c74db822 145 Pfam PF03692 Putative zinc- or iron-chelating domain 23 91 2.0E-7 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VV93_v1c21060 191bf719d63fbbe0d66a89c3c74db822 145 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 1 144 40.704 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 VV93_v1c33860 4fb5d7f3f880301647824e221917cae7 296 Gene3D G3DSA:1.10.3720.10 1 283 5.4E-74 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33860 4fb5d7f3f880301647824e221917cae7 296 SUPERFAMILY SSF161098 10 296 2.09E-68 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c33860 4fb5d7f3f880301647824e221917cae7 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 286 2.5E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c38290 b57acae0b939c786870ec92c59ee11f6 228 SUPERFAMILY SSF161098 6 218 4.45E-48 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c38290 b57acae0b939c786870ec92c59ee11f6 228 Gene3D G3DSA:1.10.3720.10 2 224 2.1E-60 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c38290 b57acae0b939c786870ec92c59ee11f6 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 27 218 7.9E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c38290 b57acae0b939c786870ec92c59ee11f6 228 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 10 219 1.9E-71 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 VV93_v1c34620 0740969a772c09921f90eca16332764b 300 Pfam PF00892 EamA-like transporter family 5 136 3.5E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c34620 0740969a772c09921f90eca16332764b 300 Pfam PF00892 EamA-like transporter family 153 300 1.7E-6 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c34620 0740969a772c09921f90eca16332764b 300 TIGRFAM TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein 4 297 2.8E-123 T 11-10-2018 IPR017725 Phosphonate utilization associated transmembrane protein, putative VV93_v1c34620 0740969a772c09921f90eca16332764b 300 SUPERFAMILY SSF103481 201 298 2.35E-8 T 11-10-2018 VV93_v1c34620 0740969a772c09921f90eca16332764b 300 SUPERFAMILY SSF103481 41 138 1.07E-8 T 11-10-2018 VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 9 91 6.7E-26 T 11-10-2018 IPR005228 Conserved hypothetical protein CHP00251 VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 SUPERFAMILY SSF69786 3 96 3.66E-32 T 11-10-2018 IPR036591 YggU-like superfamily VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 12 82 2.4E-24 T 11-10-2018 IPR003746 Protein of unknown function DUF167 VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 Gene3D G3DSA:3.30.1200.10 2 96 9.9E-34 T 11-10-2018 IPR036591 YggU-like superfamily VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 8 94 19.672 T 11-10-2018 IPR003746 Protein of unknown function DUF167 VV93_v1c25830 fc577f56f67801cc438f7bfd77762b91 96 SMART SM01152 8 84 1.2E-34 T 11-10-2018 IPR003746 Protein of unknown function DUF167 VV93_v1c30520 8b9053bc94ed58c4cc8d08baaae4f02d 282 Gene3D G3DSA:3.40.50.1820 60 275 2.7E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c30520 8b9053bc94ed58c4cc8d08baaae4f02d 282 Pfam PF12146 Serine aminopeptidase, S33 83 183 4.9E-10 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 VV93_v1c30520 8b9053bc94ed58c4cc8d08baaae4f02d 282 SUPERFAMILY SSF53474 33 267 9.33E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c30520 8b9053bc94ed58c4cc8d08baaae4f02d 282 Pfam PF08386 TAP-like protein 211 269 1.4E-4 T 11-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 Gene3D G3DSA:1.25.40.10 30 172 1.9E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 SUPERFAMILY SSF48452 57 235 4.16E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 SMART SM00028 342 375 390.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 SMART SM00028 66 99 83.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 SMART SM00028 278 311 48.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 SMART SM00028 104 137 6.5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 Gene3D G3DSA:1.25.40.10 173 402 3.3E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c38580 0343e04f7092421a728ba0e8a8031d9d 425 Pfam PF13428 Tetratricopeptide repeat 107 149 5.0E-5 T 11-10-2018 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 SUPERFAMILY SSF51215 35 174 1.11E-10 T 11-10-2018 IPR037923 Transcription regulator HTH-like VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 SUPERFAMILY SSF46689 243 292 1.25E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 2.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 2.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 Gene3D G3DSA:1.10.10.60 188 294 4.4E-26 T 11-10-2018 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 Gene3D G3DSA:2.60.120.280 41 149 4.0E-9 T 11-10-2018 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 Pfam PF12833 Helix-turn-helix domain 214 291 1.0E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c38520 cc7b6f7930aa3b38fc71a85643ca54f1 294 SMART SM00342 207 290 4.4E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c04330 5ee584ce605d6555d512c64d4327ade1 322 Pfam PF16868 NMT1-like family 30 319 2.0E-96 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VV93_v1c04330 5ee584ce605d6555d512c64d4327ade1 322 Gene3D G3DSA:3.40.190.10 117 255 1.2E-110 T 11-10-2018 VV93_v1c04330 5ee584ce605d6555d512c64d4327ade1 322 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 319 2.5E-112 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family VV93_v1c04330 5ee584ce605d6555d512c64d4327ade1 322 SUPERFAMILY SSF53850 25 321 3.21E-88 T 11-10-2018 VV93_v1c04330 5ee584ce605d6555d512c64d4327ade1 322 Gene3D G3DSA:3.40.190.10 30 319 1.2E-110 T 11-10-2018 VV93_v1c17060 24f55e7657f245d02ae1c6c00bce202e 337 SUPERFAMILY SSF56935 163 332 1.03E-5 T 11-10-2018 VV93_v1c17060 24f55e7657f245d02ae1c6c00bce202e 337 Pfam PF11383 Protein of unknown function (DUF3187) 33 332 4.6E-117 T 11-10-2018 IPR021523 Protein of unknown function DUF3187 VV93_v1c43650 8502866faad082462d1309524aeeea4e 178 Gene3D G3DSA:1.20.58.320 1 77 2.4E-25 T 11-10-2018 VV93_v1c43650 8502866faad082462d1309524aeeea4e 178 Pfam PF06041 Bacterial protein of unknown function (DUF924) 5 175 3.3E-63 T 11-10-2018 IPR010323 Protein of unknown function DUF924 VV93_v1c43650 8502866faad082462d1309524aeeea4e 178 SUPERFAMILY SSF48452 2 174 4.17E-68 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c43650 8502866faad082462d1309524aeeea4e 178 Gene3D G3DSA:1.25.40.10 78 178 1.3E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c10510 99fa8f2c5a739cb9302d8ad9353e69bc 105 Pfam PF06844 Protein of unknown function (DUF1244) 35 101 5.2E-35 T 11-10-2018 IPR023163 SMc04008-like domain VV93_v1c10510 99fa8f2c5a739cb9302d8ad9353e69bc 105 Gene3D G3DSA:1.10.3340.10 4 105 4.6E-45 T 11-10-2018 IPR036810 SMc04008-like superfamily VV93_v1c10510 99fa8f2c5a739cb9302d8ad9353e69bc 105 SUPERFAMILY SSF158757 8 84 1.27E-35 T 11-10-2018 IPR036810 SMc04008-like superfamily VV93_v1c31240 a1b8bf9afda613c8671be34e7c0d732d 426 SUPERFAMILY SSF56935 68 426 2.75E-91 T 11-10-2018 VV93_v1c31240 a1b8bf9afda613c8671be34e7c0d732d 426 Pfam PF02264 LamB porin 69 426 1.5E-73 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c31240 a1b8bf9afda613c8671be34e7c0d732d 426 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 97 396 1.0E-39 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 VV93_v1c31240 a1b8bf9afda613c8671be34e7c0d732d 426 Gene3D G3DSA:2.40.170.10 67 426 6.2E-71 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 Gene3D G3DSA:1.10.10.60 236 345 4.4E-25 T 11-10-2018 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 SMART SM00342 255 337 1.7E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 SUPERFAMILY SSF46689 290 341 6.27E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 Pfam PF12833 Helix-turn-helix domain 261 339 2.3E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 306 321 9.1E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 321 337 9.1E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c20090 eb44cf32addc1afd3b7ac6dc4fb050cc 349 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 31 212 1.6E-34 T 11-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VV93_v1c32730 778bb78c6ae73d5430e07a5e05b5ae6c 106 SUPERFAMILY SSF117782 1 106 3.4E-39 T 11-10-2018 IPR035439 UPF0145 domain superfamily VV93_v1c32730 778bb78c6ae73d5430e07a5e05b5ae6c 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 25.373 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 VV93_v1c32730 778bb78c6ae73d5430e07a5e05b5ae6c 106 Gene3D G3DSA:3.30.110.70 2 106 5.0E-43 T 11-10-2018 VV93_v1c32730 778bb78c6ae73d5430e07a5e05b5ae6c 106 Pfam PF01906 Putative heavy-metal-binding 1 105 8.5E-41 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 PRINTS PR00421 Thioredoxin family signature 58 66 2.4E-7 T 11-10-2018 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 PRINTS PR00421 Thioredoxin family signature 106 117 2.4E-7 T 11-10-2018 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 PRINTS PR00421 Thioredoxin family signature 66 75 2.4E-7 T 11-10-2018 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 Gene3D G3DSA:2.20.28.140 2 37 1.2E-13 T 11-10-2018 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 PIRSF PIRSF000077 38 142 1.9E-32 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 Pfam PF00085 Thioredoxin 43 140 1.5E-27 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 SUPERFAMILY SSF52833 29 142 3.34E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 141 3.6E-35 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 VV93_v1c38500 8c12155928211bd8937769161ef658d7 144 Gene3D G3DSA:3.40.30.10 41 144 1.9E-33 T 11-10-2018 VV93_v1c23520 9166c01fccae8539af6b497339fed26c 356 Gene3D G3DSA:3.20.20.80 20 313 2.4E-31 T 11-10-2018 VV93_v1c23520 9166c01fccae8539af6b497339fed26c 356 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 40 292 2.2E-10 T 11-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 VV93_v1c23520 9166c01fccae8539af6b497339fed26c 356 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 163 172 - T 11-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 VV93_v1c23520 9166c01fccae8539af6b497339fed26c 356 SUPERFAMILY SSF51445 7 315 1.36E-50 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c11750 5a3710fca4b5f2596d3077613b0c1593 145 Gene3D G3DSA:1.10.8.640 35 119 3.2E-32 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VV93_v1c11750 5a3710fca4b5f2596d3077613b0c1593 145 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 12 143 1.7E-59 T 11-10-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF VV93_v1c11750 5a3710fca4b5f2596d3077613b0c1593 145 Pfam PF03918 Cytochrome C biogenesis protein 35 143 2.4E-41 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family VV93_v1c34050 4694f259659e17352846b3cc3305f92c 261 SMART SM00382 31 220 3.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c34050 4694f259659e17352846b3cc3305f92c 261 Pfam PF00005 ABC transporter 22 171 1.9E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c34050 4694f259659e17352846b3cc3305f92c 261 SUPERFAMILY SSF52540 6 232 4.14E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34050 4694f259659e17352846b3cc3305f92c 261 Gene3D G3DSA:3.40.50.300 1 255 6.5E-59 T 11-10-2018 VV93_v1c43520 49e91d3160339619bbf537e1afb06239 215 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 24 210 7.1E-53 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 VV93_v1c43520 49e91d3160339619bbf537e1afb06239 215 Hamap MF_00789 UPF0319 protein YccT [yccT]. 5 215 29.283 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 VV93_v1c38200 56f57570c85dde3526c13f2d8a61c644 93 Pfam PF10115 Transcriptional activator HlyU 2 92 1.2E-38 T 11-10-2018 IPR018772 Transcription activator HlyU VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 SUPERFAMILY SSF52540 334 517 4.04E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 Gene3D G3DSA:3.40.50.300 282 529 3.6E-51 T 11-10-2018 VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 Pfam PF12848 ABC transporter 224 309 1.0E-21 T 11-10-2018 IPR032781 ABC-transporter extension domain VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 Pfam PF00005 ABC transporter 337 466 1.3E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 Pfam PF00005 ABC transporter 18 184 2.5E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 SMART SM00382 343 511 1.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 SMART SM00382 26 238 3.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 SUPERFAMILY SSF52540 7 237 2.62E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16000 291273155cc60f19d0706e5a6e98a52c 530 Gene3D G3DSA:3.40.50.300 2 281 3.2E-57 T 11-10-2018 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 73 89 5.6E-28 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 89 102 5.6E-28 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 117 5.6E-28 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 5.6E-28 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 Gene3D G3DSA:2.30.330.10 44 136 4.0E-34 T 11-10-2018 IPR036429 SpoA-like superfamily VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 128 1.5E-33 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 56 126 6.6E-25 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) VV93_v1c21760 fc353ee4257e682610decd9a1771809b 136 SUPERFAMILY SSF101801 54 134 7.32E-25 T 11-10-2018 IPR036429 SpoA-like superfamily VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Gene3D G3DSA:1.20.140.10 361 508 4.8E-98 T 11-10-2018 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Gene3D G3DSA:2.40.110.10 237 360 4.8E-98 T 11-10-2018 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 361 508 2.9E-13 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 145 234 4.9E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 SUPERFAMILY SSF47203 361 508 5.48E-22 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Pfam PF09317 Domain of unknown function (DUF1974) 515 796 3.2E-113 T 11-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 SUPERFAMILY SSF56645 122 356 2.62E-42 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 VV93_v1c22440 49849193e555181ab37d8eca3091c35c 815 Gene3D G3DSA:1.10.540.10 123 236 4.8E-98 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 VV93_v1c34630 dd1e70e966473fd99a61bfb1ce71a9c2 482 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 20 480 2.1E-236 T 11-10-2018 IPR017715 Putative aminophosphonate oxidoreductase VV93_v1c34630 dd1e70e966473fd99a61bfb1ce71a9c2 482 Pfam PF01266 FAD dependent oxidoreductase 45 409 2.2E-47 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c34630 dd1e70e966473fd99a61bfb1ce71a9c2 482 SUPERFAMILY SSF51905 31 323 6.48E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c34630 dd1e70e966473fd99a61bfb1ce71a9c2 482 Gene3D G3DSA:3.30.9.10 139 370 1.9E-59 T 11-10-2018 VV93_v1c34630 dd1e70e966473fd99a61bfb1ce71a9c2 482 Gene3D G3DSA:3.50.50.60 45 411 1.9E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 Pfam PF01553 Acyltransferase 442 567 3.1E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 SMART SM00563 456 570 1.5E-35 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 Pfam PF07690 Major Facilitator Superfamily 19 382 9.8E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 SUPERFAMILY SSF69593 402 570 6.54E-30 T 11-10-2018 VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 SUPERFAMILY SSF103473 14 424 1.09E-25 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c10440 617cab5e01436cfa1661782fc10ce4d3 624 Gene3D G3DSA:1.20.1250.20 10 422 3.6E-25 T 11-10-2018 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 3.4E-31 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 PRINTS PR00297 10kDa chaperonin signature 25 46 3.8E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 PRINTS PR00297 10kDa chaperonin signature 82 95 3.8E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 PRINTS PR00297 10kDa chaperonin signature 3 18 3.8E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 PRINTS PR00297 10kDa chaperonin signature 60 72 3.8E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 SUPERFAMILY SSF50129 1 95 1.17E-31 T 11-10-2018 IPR011032 GroES-like superfamily VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 SMART SM00883 2 95 8.8E-51 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 24.088 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 VV93_v1c28300 f4e65b0978431a86bc740c098f333da6 96 Gene3D G3DSA:2.30.33.40 1 96 2.6E-36 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 VV93_v1c20630 24f04ee353355fba52e1060a91652372 251 SUPERFAMILY SSF53448 3 246 1.74E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c20630 24f04ee353355fba52e1060a91652372 251 Pfam PF02348 Cytidylyltransferase 5 221 4.2E-68 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 VV93_v1c20630 24f04ee353355fba52e1060a91652372 251 Gene3D G3DSA:3.90.550.10 1 250 2.1E-94 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c20630 24f04ee353355fba52e1060a91652372 251 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 47.601 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VV93_v1c20630 24f04ee353355fba52e1060a91652372 251 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 1.3E-115 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 VV93_v1c26610 9d73569a0cd62ee0ac51a4772efbc06f 188 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 4.2E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26610 9d73569a0cd62ee0ac51a4772efbc06f 188 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c26610 9d73569a0cd62ee0ac51a4772efbc06f 188 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 1.2E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 372 386 7.9E-21 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 69 81 7.9E-21 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 168 196 7.9E-21 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 388 407 7.9E-21 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 Gene3D G3DSA:1.20.81.30 260 371 6.0E-26 T 11-10-2018 VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 196 4.8E-30 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 277 399 2.2E-26 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 168 196 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 VV93_v1c24910 a48f71f4856d63a29e5e29b3eed752eb 408 Gene3D G3DSA:1.20.81.30 58 175 6.7E-30 T 11-10-2018 VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 Gene3D G3DSA:3.40.50.150 4 210 6.9E-69 T 11-10-2018 VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 29 207 3.0E-58 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 PIRSF PIRSF003078 1 211 4.7E-60 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 Pfam PF02527 rRNA small subunit methyltransferase G 24 204 3.8E-64 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 SUPERFAMILY SSF53335 7 209 9.73E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c29830 bac15505f79bee19563dd39dfaa0c3e4 211 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 205 28.83 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 VV93_v1c19290 ecf53250e1882853175b60d7f92991c4 172 Gene3D G3DSA:3.40.630.30 13 149 1.8E-18 T 11-10-2018 VV93_v1c19290 ecf53250e1882853175b60d7f92991c4 172 SUPERFAMILY SSF55729 16 162 1.95E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c19290 ecf53250e1882853175b60d7f92991c4 172 Pfam PF13302 Acetyltransferase (GNAT) domain 57 148 1.3E-10 T 11-10-2018 IPR000182 GNAT domain VV93_v1c18490 8a182cf7db45426b400599951f5a8a36 453 Gene3D G3DSA:3.30.1330.90 10 159 1.8E-49 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VV93_v1c18490 8a182cf7db45426b400599951f5a8a36 453 SUPERFAMILY SSF143548 16 157 1.96E-44 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VV93_v1c18490 8a182cf7db45426b400599951f5a8a36 453 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 5.1E-228 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VV93_v1c18490 8a182cf7db45426b400599951f5a8a36 453 Pfam PF03313 Serine dehydratase alpha chain 183 448 3.1E-98 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VV93_v1c18490 8a182cf7db45426b400599951f5a8a36 453 Pfam PF03315 Serine dehydratase beta chain 3 155 2.4E-54 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VV93_v1c45070 db3486c540fa0157cc37eab6ec6ff406 235 SUPERFAMILY SSF53720 10 182 2.62E-8 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c45070 db3486c540fa0157cc37eab6ec6ff406 235 Gene3D G3DSA:3.40.605.10 7 233 5.4E-7 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 TIGRFAM TIGR01230 agmatinase: agmatinase 26 299 1.3E-92 T 11-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 SUPERFAMILY SSF52768 12 303 1.4E-93 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 Gene3D G3DSA:3.40.800.10 1 308 1.7E-103 T 11-10-2018 VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 Pfam PF00491 Arginase family 33 298 1.5E-88 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 PIRSF PIRSF036979 12 305 3.4E-96 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 VV93_v1c17480 d2c4bc7e67951ebf552124aa9dcfa4f0 311 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 VV93_v1c03770 a6ad3de17abb5f9b41c631f2f91d80ea 150 Gene3D G3DSA:3.40.630.30 1 149 5.1E-44 T 11-10-2018 VV93_v1c03770 a6ad3de17abb5f9b41c631f2f91d80ea 150 SUPERFAMILY SSF55729 1 149 1.03E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c03770 a6ad3de17abb5f9b41c631f2f91d80ea 150 Pfam PF13673 Acetyltransferase (GNAT) domain 46 148 1.1E-16 T 11-10-2018 IPR000182 GNAT domain VV93_v1c06630 fb76a5785eb573670e5685705443763b 964 Pfam PF03175 DNA polymerase type B, organellar and viral 410 578 6.2E-10 T 11-10-2018 IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus GO:0000166|GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c06630 fb76a5785eb573670e5685705443763b 964 SUPERFAMILY SSF56672 409 677 2.67E-14 T 11-10-2018 VV93_v1c16970 8f820d688e59b378b9947ab83c7af9a1 255 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 28 199 1.4E-19 T 11-10-2018 IPR000477 Reverse transcriptase domain VV93_v1c16970 8f820d688e59b378b9947ab83c7af9a1 255 SUPERFAMILY SSF56672 116 197 8.9E-10 T 11-10-2018 VV93_v1c00320 7a4f833744ffbcc11ef2968fe01389c3 83 Pfam PF04380 Membrane fusogenic activity 1 78 1.4E-27 T 11-10-2018 IPR007475 Membrane fusogenic activity VV93_v1c28680 8fbb43b78714cb46ea39f63488d2dc9a 308 Gene3D G3DSA:3.40.50.720 32 300 1.9E-97 T 11-10-2018 VV93_v1c28680 8fbb43b78714cb46ea39f63488d2dc9a 308 Gene3D G3DSA:3.40.50.720 92 277 1.9E-97 T 11-10-2018 VV93_v1c28680 8fbb43b78714cb46ea39f63488d2dc9a 308 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 100 273 4.6E-46 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 VV93_v1c28680 8fbb43b78714cb46ea39f63488d2dc9a 308 SUPERFAMILY SSF52283 12 115 4.42E-6 T 11-10-2018 VV93_v1c28680 8fbb43b78714cb46ea39f63488d2dc9a 308 SUPERFAMILY SSF51735 94 274 3.04E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c26400 4ac3cd9c97d2028e0d2b0e60b85f08a4 140 Gene3D G3DSA:3.30.70.970 1 132 2.4E-58 T 11-10-2018 IPR036701 RraB-like superfamily VV93_v1c26400 4ac3cd9c97d2028e0d2b0e60b85f08a4 140 SUPERFAMILY SSF89946 8 126 4.97E-39 T 11-10-2018 IPR036701 RraB-like superfamily VV93_v1c26400 4ac3cd9c97d2028e0d2b0e60b85f08a4 140 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 11 124 29.753 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B VV93_v1c26400 4ac3cd9c97d2028e0d2b0e60b85f08a4 140 Pfam PF06877 Regulator of ribonuclease activity B 18 120 3.2E-34 T 11-10-2018 IPR009671 Regulator of ribonuclease activity B domain VV93_v1c26400 4ac3cd9c97d2028e0d2b0e60b85f08a4 140 PIRSF PIRSF018193 8 140 4.2E-59 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B VV93_v1c10130 be30b87def83392ed57ff1b702d533f2 415 SUPERFAMILY SSF53850 20 414 1.79E-63 T 11-10-2018 VV93_v1c10130 be30b87def83392ed57ff1b702d533f2 415 Pfam PF01547 Bacterial extracellular solute-binding protein 39 291 2.4E-21 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c10130 be30b87def83392ed57ff1b702d533f2 415 Gene3D G3DSA:3.40.190.10 24 371 1.8E-161 T 11-10-2018 VV93_v1c10130 be30b87def83392ed57ff1b702d533f2 415 Gene3D G3DSA:3.40.190.10 139 396 1.8E-161 T 11-10-2018 VV93_v1c03780 8b3b65e9bb13c8bfeb6b4a009bdbeb00 187 SUPERFAMILY SSF51206 17 137 1.7E-20 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like VV93_v1c03780 8b3b65e9bb13c8bfeb6b4a009bdbeb00 187 Gene3D G3DSA:2.60.120.10 3 139 3.7E-19 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c23510 15058af47548dfe6e0d7e239f29ef5ab 461 Gene3D G3DSA:1.20.1250.20 7 209 3.1E-9 T 11-10-2018 VV93_v1c23510 15058af47548dfe6e0d7e239f29ef5ab 461 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 18 442 1.5E-106 T 11-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 VV93_v1c23510 15058af47548dfe6e0d7e239f29ef5ab 461 Pfam PF13347 MFS/sugar transport protein 20 430 1.2E-78 T 11-10-2018 VV93_v1c23510 15058af47548dfe6e0d7e239f29ef5ab 461 Gene3D G3DSA:1.20.1250.20 221 430 1.1E-10 T 11-10-2018 VV93_v1c23510 15058af47548dfe6e0d7e239f29ef5ab 461 SUPERFAMILY SSF103473 10 425 1.83E-27 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c19590 050e3424e6a875f6c73c7f7371bf7323 158 Pfam PF04002 RadC-like JAB domain 38 156 1.6E-44 T 11-10-2018 IPR025657 RadC-like JAB domain VV93_v1c19590 050e3424e6a875f6c73c7f7371bf7323 158 Gene3D G3DSA:3.40.140.10 37 158 3.8E-43 T 11-10-2018 VV93_v1c19590 050e3424e6a875f6c73c7f7371bf7323 158 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 108 113 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site VV93_v1c19590 050e3424e6a875f6c73c7f7371bf7323 158 TIGRFAM TIGR00608 radc: DNA repair protein RadC 24 158 1.5E-44 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 VV93_v1c19590 050e3424e6a875f6c73c7f7371bf7323 158 SUPERFAMILY SSF102712 54 125 4.05E-5 T 11-10-2018 VV93_v1c43110 04a80cff7e6c3450a2db5e62e174d405 238 SUPERFAMILY SSF53098 43 222 1.25E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c43110 04a80cff7e6c3450a2db5e62e174d405 238 Pfam PF00929 Exonuclease 54 216 6.1E-14 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c43110 04a80cff7e6c3450a2db5e62e174d405 238 SMART SM00479 51 225 3.1E-18 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c43110 04a80cff7e6c3450a2db5e62e174d405 238 Gene3D G3DSA:3.30.420.10 44 227 2.9E-31 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 SUPERFAMILY SSF53790 31 276 6.02E-79 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 115 148 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 37 247 7.0E-46 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 Gene3D G3DSA:3.30.950.10 151 289 3.7E-45 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 35 268 4.2E-94 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 40 54 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 VV93_v1c03800 1f73b15952c841f478d1974875673d38 289 Gene3D G3DSA:3.40.1010.10 33 150 5.0E-44 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 VV93_v1c39170 23a3c60d82851eec87225481cb580495 247 Pfam PF01609 Transposase DDE domain 54 233 4.2E-23 T 11-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 VV93_v1c14580 a28b515c0e4aed5d8f9fc4347aae626d 220 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 88 118 - T 11-10-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 VV93_v1c14580 a28b515c0e4aed5d8f9fc4347aae626d 220 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 214 1.1E-38 T 11-10-2018 IPR006214 Bax inhibitor 1-related VV93_v1c15260 a799828d4a6f995fd7e2abd8078d4192 1613 SUPERFAMILY SSF51735 945 1281 1.44E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c15260 a799828d4a6f995fd7e2abd8078d4192 1613 SUPERFAMILY SSF53223 754 940 7.0E-26 T 11-10-2018 VV93_v1c15260 a799828d4a6f995fd7e2abd8078d4192 1613 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 76 1602 0.0 T 11-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VV93_v1c15260 a799828d4a6f995fd7e2abd8078d4192 1613 PIRSF PIRSF036761 1 1610 0.0 T 11-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Pfam PF13437 HlyD family secretion protein 155 257 7.9E-7 T 11-10-2018 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Gene3D G3DSA:2.40.30.170 43 271 3.0E-61 T 11-10-2018 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Pfam PF13533 Biotin-lipoyl like 57 104 6.6E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 SUPERFAMILY SSF111369 46 269 8.76E-25 T 11-10-2018 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Gene3D G3DSA:2.40.420.20 272 348 3.0E-61 T 11-10-2018 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Gene3D G3DSA:2.40.50.100 57 189 3.0E-61 T 11-10-2018 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 350 6.5E-55 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 VV93_v1c36980 b185457f4c21bc25c185f9cc5da0e152 356 Gene3D G3DSA:1.10.287.470 91 149 3.0E-61 T 11-10-2018 VV93_v1c32100 31dd711e494c0c5dc0b9a34e9d2d04f0 371 Gene3D G3DSA:2.40.160.50 122 369 2.7E-9 T 11-10-2018 VV93_v1c32100 31dd711e494c0c5dc0b9a34e9d2d04f0 371 Pfam PF01103 Surface antigen 89 294 1.9E-8 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VV93_v1c35630 8ec417db8c8024482c1c82687e97e29a 106 Gene3D G3DSA:1.10.760.10 27 106 1.2E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c35630 8ec417db8c8024482c1c82687e97e29a 106 SUPERFAMILY SSF46626 20 104 2.22E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c35630 8ec417db8c8024482c1c82687e97e29a 106 Pfam PF00034 Cytochrome c 35 104 7.3E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 Pfam PF01263 Aldose 1-epimerase 25 351 3.8E-94 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 20 353 3.1E-146 T 11-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 178 187 - T 11-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 Gene3D G3DSA:2.70.98.10 14 353 5.7E-119 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 SUPERFAMILY SSF74650 14 352 2.01E-110 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c23540 5825331a992114a4c07fc4cce87d3f59 354 PIRSF PIRSF005096 7 354 2.7E-116 T 11-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 VV93_v1c13440 de0f095f71ce82d7d819afe2b6a1fe34 817 Pfam PF02687 FtsX-like permease family 715 809 3.9E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c13440 de0f095f71ce82d7d819afe2b6a1fe34 817 Pfam PF02687 FtsX-like permease family 271 368 1.1E-6 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c11310 ec563f8e01c5f70127a395fe9cb78032 187 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 175 18.429 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VV93_v1c11310 ec563f8e01c5f70127a395fe9cb78032 187 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 176 8.7E-64 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VV93_v1c11310 ec563f8e01c5f70127a395fe9cb78032 187 Pfam PF04279 Intracellular septation protein A 1 174 4.5E-68 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VV93_v1c18820 62ee747858f26dae555bcfa85374b854 459 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 19 459 5.0E-144 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase VV93_v1c18820 62ee747858f26dae555bcfa85374b854 459 SUPERFAMILY SSF46626 318 459 4.3E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c18820 62ee747858f26dae555bcfa85374b854 459 Gene3D G3DSA:1.10.760.10 312 459 3.8E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c18820 62ee747858f26dae555bcfa85374b854 459 PIRSF PIRSF028099 7 459 1.8E-184 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase VV93_v1c05340 0422d03c7048652cf00d3ac29a176aa3 367 Pfam PF03969 AFG1-like ATPase 1 364 4.4E-156 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 VV93_v1c05340 0422d03c7048652cf00d3ac29a176aa3 367 Gene3D G3DSA:3.40.50.300 13 190 1.7E-20 T 11-10-2018 VV93_v1c05340 0422d03c7048652cf00d3ac29a176aa3 367 SUPERFAMILY SSF52540 62 201 1.52E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c05340 0422d03c7048652cf00d3ac29a176aa3 367 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 367 53.367 T 11-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 VV93_v1c35400 ddb0be8979815280631afa45072917d1 316 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 9 151 2.4E-18 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase VV93_v1c35400 ddb0be8979815280631afa45072917d1 316 SUPERFAMILY SSF55961 10 149 3.67E-16 T 11-10-2018 VV93_v1c35400 ddb0be8979815280631afa45072917d1 316 Gene3D G3DSA:3.30.530.20 6 157 2.3E-13 T 11-10-2018 IPR023393 START-like domain superfamily VV93_v1c35400 ddb0be8979815280631afa45072917d1 316 Gene3D G3DSA:3.20.80.10 162 312 1.1E-22 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c35400 ddb0be8979815280631afa45072917d1 316 SUPERFAMILY SSF55136 167 304 3.66E-11 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 SMART SM00448 3 115 4.2E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 Pfam PF00072 Response regulator receiver domain 5 115 2.9E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 SUPERFAMILY SSF103039 140 329 1.16E-37 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 Gene3D G3DSA:3.40.50.2300 2 124 1.6E-28 T 11-10-2018 VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 SUPERFAMILY SSF52172 4 122 5.41E-28 T 11-10-2018 IPR011006 CheY-like superfamily VV93_v1c41130 dcb483324ecab1ddb90c34e654d9ad26 334 Gene3D G3DSA:3.40.1550.10 139 328 1.0E-30 T 11-10-2018 IPR028976 CheC-like superfamily VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 Gene3D G3DSA:3.30.1140.32 108 208 3.1E-45 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 SUPERFAMILY SSF54814 2 106 1.62E-36 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 6.5E-42 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.991 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 Pfam PF07650 KH domain 38 111 4.1E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 SUPERFAMILY SSF54821 108 206 7.72E-41 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 Gene3D G3DSA:3.30.300.20 17 107 5.9E-29 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.3E-98 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 VV93_v1c03520 5bebf174d373222397797f0f6845fcb8 233 SMART SM00322 60 125 7.4E-8 T 11-10-2018 IPR004087 K Homology domain GO:0003676 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 PIRSF PIRSF000178 2 130 9.6E-33 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 8 124 1.1E-28 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 Gene3D G3DSA:1.20.1300.10 5 130 3.2E-44 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 9 127 1.2E-39 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 SUPERFAMILY SSF81343 8 130 1.16E-34 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 86 99 - T 11-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c09510 6952b8538c1568528d53027f813e4498 130 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 11 35 - T 11-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 VV93_v1c13790 550914d71d9ecb62d42cf80c0b9b6661 225 Pfam PF04172 LrgB-like family 6 218 7.9E-72 T 11-10-2018 IPR007300 CidB/LrgB family VV93_v1c35700 132094f113d16bcdf3b4a97dcb28383a 206 Pfam PF01810 LysE type translocator 15 204 2.6E-24 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c35700 132094f113d16bcdf3b4a97dcb28383a 206 PIRSF PIRSF006324 1 206 7.8E-45 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Pfam PF02743 Cache domain 43 258 2.5E-29 T 11-10-2018 IPR033479 Double Cache domain 1 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 SMART SM00304 353 403 3.3 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 SMART SM00304 296 350 6.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 SUPERFAMILY SSF103190 89 175 1.96E-11 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Gene3D G3DSA:1.10.287.950 297 627 4.0E-72 T 11-10-2018 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 SMART SM00283 365 626 9.9E-64 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Pfam PF00672 HAMP domain 300 346 3.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Gene3D G3DSA:3.30.450.20 64 168 4.0E-53 T 11-10-2018 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Gene3D G3DSA:3.30.450.20 52 269 4.0E-53 T 11-10-2018 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 SUPERFAMILY SSF58104 318 627 3.4E-76 T 11-10-2018 VV93_v1c18670 130098a50f82c3dcedf9baf10673cfcc 627 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 424 593 3.5E-39 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c07020 2475df50e040e9b102f05c3379f2836b 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 2.3E-69 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VV93_v1c07020 2475df50e040e9b102f05c3379f2836b 127 Gene3D G3DSA:3.90.1010.10 1 127 5.5E-59 T 11-10-2018 VV93_v1c07020 2475df50e040e9b102f05c3379f2836b 127 Pfam PF01592 NifU-like N terminal domain 2 125 1.3E-56 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 VV93_v1c07020 2475df50e040e9b102f05c3379f2836b 127 SUPERFAMILY SSF82649 1 125 9.94E-48 T 11-10-2018 VV93_v1c20930 d30d97d13d8d20a3b0966a159db08a42 494 Gene3D G3DSA:1.50.10.10 75 434 4.4E-22 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c20930 d30d97d13d8d20a3b0966a159db08a42 494 SUPERFAMILY SSF48208 34 455 4.17E-55 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c20930 d30d97d13d8d20a3b0966a159db08a42 494 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 95 206 3.7E-10 T 11-10-2018 VV93_v1c15250 d685d2fa126af907a82c547145eafe48 72 Pfam PF11197 Protein of unknown function (DUF2835) 4 70 6.1E-28 T 11-10-2018 IPR021363 Protein of unknown function DUF2835 VV93_v1c22160 f7b7084d1d9182277497d824994469d7 355 SUPERFAMILY SSF52540 11 236 1.91E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c22160 f7b7084d1d9182277497d824994469d7 355 Gene3D G3DSA:3.40.50.300 10 251 2.8E-34 T 11-10-2018 VV93_v1c22160 f7b7084d1d9182277497d824994469d7 355 Pfam PF13614 AAA domain 11 178 9.3E-18 T 11-10-2018 IPR025669 AAA domain VV93_v1c01150 44072073430c2a777c7fc25e1fc1da6f 132 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 18 123 2.0E-55 T 11-10-2018 IPR009867 Protein of unknown function DUF1422 VV93_v1c01150 44072073430c2a777c7fc25e1fc1da6f 132 Pfam PF07226 Protein of unknown function (DUF1422) 17 127 5.3E-48 T 11-10-2018 IPR009867 Protein of unknown function DUF1422 VV93_v1c44000 8cbfe777efd476e90caf4a717a1ab1b2 427 Pfam PF02687 FtsX-like permease family 322 420 1.1E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c44000 8cbfe777efd476e90caf4a717a1ab1b2 427 Pfam PF12704 MacB-like periplasmic core domain 20 255 1.1E-24 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c16940 4bffac8ca6b7e689c954e41ec36ac8e5 363 Pfam PF14022 Protein of unknown function (DUF4238) 6 252 5.0E-34 T 11-10-2018 IPR025332 Protein of unknown function DUF4238 VV93_v1c22860 ba1fdff7942c1b5e20f8a248efa91304 147 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 30.035 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 VV93_v1c22860 ba1fdff7942c1b5e20f8a248efa91304 147 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 1.0E-47 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 VV93_v1c23060 08cdfd1567764b6cdaf28df3ab699489 255 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 5 252 35.565 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VV93_v1c23060 08cdfd1567764b6cdaf28df3ab699489 255 Pfam PF04205 FMN-binding domain 142 237 1.4E-15 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VV93_v1c23060 08cdfd1567764b6cdaf28df3ab699489 255 SMART SM00900 142 240 1.0E-32 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 VV93_v1c23060 08cdfd1567764b6cdaf28df3ab699489 255 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 4 248 6.2E-96 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VV93_v1c23060 08cdfd1567764b6cdaf28df3ab699489 255 PIRSF PIRSF009437 1 255 1.3E-104 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 Pfam PF01223 DNA/RNA non-specific endonuclease 22 229 2.5E-57 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 98 106 - T 11-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 Gene3D G3DSA:3.40.570.10 11 242 3.5E-74 T 11-10-2018 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 SMART SM00892 38 230 9.5E-65 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 SMART SM00477 39 230 1.3E-63 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 VV93_v1c08190 a773a41339ffd36837eb5aa7fc62af6c 247 SUPERFAMILY SSF54060 21 239 8.83E-71 T 11-10-2018 VV93_v1c20750 60edb79ef9ceff248fa0ae454746d0b5 182 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 1.3E-22 T 11-10-2018 IPR000182 GNAT domain VV93_v1c20750 60edb79ef9ceff248fa0ae454746d0b5 182 SUPERFAMILY SSF55729 3 177 3.24E-44 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c20750 60edb79ef9ceff248fa0ae454746d0b5 182 Gene3D G3DSA:3.40.630.30 1 178 8.9E-45 T 11-10-2018 VV93_v1c30400 3ec07e91121580dd927fe2ba872d5245 119 Pfam PF04219 Protein of unknown function, DUF 12 100 4.0E-34 T 11-10-2018 IPR007335 Protein of unknown function DUF413 VV93_v1c39160 d39390a54c2f66205d7fac568355b925 57 Pfam PF13930 DNA/RNA non-specific endonuclease 1 42 6.6E-8 T 11-10-2018 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 127 17.961 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.3E-27 T 11-10-2018 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.3E-27 T 11-10-2018 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.3E-27 T 11-10-2018 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 5.6E-33 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 VV93_v1c01680 0b8dd395f72c0750c4b5abc4c4e7c3e5 130 Pfam PF02416 mttA/Hcf106 family 4 32 9.8E-6 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 VV93_v1c11480 d6b02cd1fcba55cd922fe62bbddb39f9 698 SMART SM00052 436 680 4.0E-59 T 11-10-2018 IPR001633 EAL domain VV93_v1c11480 d6b02cd1fcba55cd922fe62bbddb39f9 698 SUPERFAMILY SSF141868 451 688 1.44E-63 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c11480 d6b02cd1fcba55cd922fe62bbddb39f9 698 Pfam PF00563 EAL domain 450 674 1.4E-59 T 11-10-2018 IPR001633 EAL domain VV93_v1c11480 d6b02cd1fcba55cd922fe62bbddb39f9 698 Gene3D G3DSA:3.20.20.450 443 690 1.1E-67 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c11480 d6b02cd1fcba55cd922fe62bbddb39f9 698 Pfam PF02378 Phosphotransferase system, EIIC 31 333 6.9E-18 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 VV93_v1c10570 e201cb3769edc421df84895413535fc8 100 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 4 81 8.4E-14 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c10570 e201cb3769edc421df84895413535fc8 100 SUPERFAMILY SSF46767 2 84 1.83E-26 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 VV93_v1c10570 e201cb3769edc421df84895413535fc8 100 Gene3D G3DSA:1.10.10.10 1 100 2.6E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c10570 e201cb3769edc421df84895413535fc8 100 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 6 82 1.3E-25 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 VV93_v1c09980 7cd44f4468fd3d2186e85e010a85b6c4 123 Gene3D G3DSA:3.10.129.10 3 123 6.3E-34 T 11-10-2018 VV93_v1c09980 7cd44f4468fd3d2186e85e010a85b6c4 123 PIRSF PIRSF030962 1 123 3.5E-64 T 11-10-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c09980 7cd44f4468fd3d2186e85e010a85b6c4 123 SUPERFAMILY SSF54637 15 110 6.3E-16 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c37910 87597aef61b970de4b3ef0fe2ef0fe13 194 Gene3D G3DSA:3.30.420.10 6 189 6.8E-39 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c37910 87597aef61b970de4b3ef0fe2ef0fe13 194 SUPERFAMILY SSF53098 10 188 1.57E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c37910 87597aef61b970de4b3ef0fe2ef0fe13 194 SMART SM00479 10 192 4.3E-27 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c37910 87597aef61b970de4b3ef0fe2ef0fe13 194 Pfam PF00929 Exonuclease 12 181 8.4E-20 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III VV93_v1c24630 0d982e11784c1fefebbdabb9c405cef9 398 Pfam PF13556 PucR C-terminal helix-turn-helix domain 321 378 2.6E-20 T 11-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain VV93_v1c24630 0d982e11784c1fefebbdabb9c405cef9 398 Pfam PF05651 Putative sugar diacid recognition 3 136 2.9E-53 T 11-10-2018 IPR008599 Putative sugar diacid recognition VV93_v1c24630 0d982e11784c1fefebbdabb9c405cef9 398 Gene3D G3DSA:1.10.10.2840 255 385 1.0E-19 T 11-10-2018 VV93_v1c01780 bf32e362077307c744dd090a6c94d525 162 Pfam PF10675 Protein of unknown function (DUF2489) 14 146 4.6E-45 T 11-10-2018 IPR019617 Domain of unknown function DUF2489 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 Gene3D G3DSA:3.40.50.300 1 172 9.1E-56 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 29.411 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 PRINTS PR01100 Shikimate kinase family signature 7 22 5.2E-29 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 PRINTS PR01100 Shikimate kinase family signature 77 86 5.2E-29 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 PRINTS PR01100 Shikimate kinase family signature 31 44 5.2E-29 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 PRINTS PR01100 Shikimate kinase family signature 98 115 5.2E-29 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 PRINTS PR01100 Shikimate kinase family signature 59 67 5.2E-29 T 11-10-2018 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 Pfam PF01202 Shikimate kinase 13 169 2.6E-56 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VV93_v1c27180 16bec5c746d63037086bc4b6f7de01a3 172 SUPERFAMILY SSF52540 4 169 4.26E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 Pfam PF00106 short chain dehydrogenase 3 185 2.4E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 Gene3D G3DSA:3.40.50.720 2 262 9.3E-56 T 11-10-2018 VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 8.9E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 8.9E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 8.9E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 8.9E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 8.9E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c09140 f84e1bf69860f5a7bcf1158f1b2f84be 275 SUPERFAMILY SSF51735 2 270 5.25E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c37200 f812bfd55d1c799e8a9c02c4c04a8983 161 PIRSF PIRSF003174 1 157 1.7E-48 T 11-10-2018 IPR010292 Uncharacterised protein family CreA VV93_v1c37200 f812bfd55d1c799e8a9c02c4c04a8983 161 Pfam PF05981 CreA protein 24 146 4.8E-44 T 11-10-2018 IPR010292 Uncharacterised protein family CreA VV93_v1c45470 f68716f7a8926108f3c76da9fa66df35 153 SMART SM00260 1 138 1.5E-29 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c45470 f68716f7a8926108f3c76da9fa66df35 153 Pfam PF01584 CheW-like domain 5 140 5.7E-32 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 VV93_v1c45470 f68716f7a8926108f3c76da9fa66df35 153 Gene3D G3DSA:2.30.30.40 8 132 2.9E-35 T 11-10-2018 VV93_v1c45470 f68716f7a8926108f3c76da9fa66df35 153 SUPERFAMILY SSF50341 2 141 5.1E-34 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 VV93_v1c45470 f68716f7a8926108f3c76da9fa66df35 153 Gene3D G3DSA:2.40.50.180 24 133 2.9E-35 T 11-10-2018 VV93_v1c11620 9795ab53138a60c20324b9f14f413c8f 92 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 35 43 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 VV93_v1c11620 9795ab53138a60c20324b9f14f413c8f 92 SUPERFAMILY SSF54292 4 85 9.7E-20 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 VV93_v1c11620 9795ab53138a60c20324b9f14f413c8f 92 Gene3D G3DSA:3.10.20.30 3 90 1.3E-17 T 11-10-2018 IPR012675 Beta-grasp domain superfamily VV93_v1c11620 9795ab53138a60c20324b9f14f413c8f 92 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 74 4.5E-9 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 VV93_v1c38610 68dfcf65447f767c071a136012999023 185 Pfam PF01618 MotA/TolQ/ExbB proton channel family 65 178 2.3E-22 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c23470 27b60721136b0cf9183e68b1e267892e 184 SUPERFAMILY SSF110857 1 123 3.01E-16 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily VV93_v1c23470 27b60721136b0cf9183e68b1e267892e 184 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 108 3.4E-8 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like VV93_v1c23470 27b60721136b0cf9183e68b1e267892e 184 Gene3D G3DSA:3.10.490.10 1 118 8.5E-8 T 11-10-2018 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 TIGRFAM TIGR00835 agcS: amino acid carrier protein 58 492 2.3E-122 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 Pfam PF01235 Sodium:alanine symporter family 96 500 1.9E-133 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 355 373 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 237 255 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 132 154 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 265 284 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 400 422 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c18090 fa9eb61698c43be25937c3738ddd8a7b 515 PRINTS PR00175 Sodium/alanine symporter signature 461 481 6.2E-48 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c41890 52d66f97987d1a8e26fdd011682107c8 251 SUPERFAMILY SSF47413 7 69 8.91E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c41890 52d66f97987d1a8e26fdd011682107c8 251 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 11 70 8.0E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c34680 f82c28289f3ed144bffe9b44179e3656 285 Pfam PF02698 DUF218 domain 6 132 3.2E-14 T 11-10-2018 IPR003848 Domain of unknown function DUF218 VV93_v1c06760 6795f0655b39b44c0bb757aa28cd79ce 556 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 287 547 2.4E-76 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 VV93_v1c06760 6795f0655b39b44c0bb757aa28cd79ce 556 Gene3D G3DSA:1.10.3720.10 287 549 1.2E-29 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c06760 6795f0655b39b44c0bb757aa28cd79ce 556 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 323 537 1.0E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c06760 6795f0655b39b44c0bb757aa28cd79ce 556 SUPERFAMILY SSF161098 285 537 9.03E-36 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c05240 5ac6232e3831bf1fe6ef917be26b2b6a 211 Pfam PF00293 NUDIX domain 59 201 1.5E-10 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c05240 5ac6232e3831bf1fe6ef917be26b2b6a 211 ProSitePatterns PS00893 Nudix box signature. 96 117 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 VV93_v1c05240 5ac6232e3831bf1fe6ef917be26b2b6a 211 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 198 1.2E-60 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 VV93_v1c05240 5ac6232e3831bf1fe6ef917be26b2b6a 211 Gene3D G3DSA:3.90.79.10 1 208 4.9E-62 T 11-10-2018 VV93_v1c05240 5ac6232e3831bf1fe6ef917be26b2b6a 211 SUPERFAMILY SSF55811 11 206 7.99E-45 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c20410 2515c6f9d9a1283e9343c4c3da697ede 181 Pfam PF07445 Primosomal replication protein priC 5 178 2.9E-50 T 11-10-2018 IPR010890 Primosomal replication PriB/PriC VV93_v1c20410 2515c6f9d9a1283e9343c4c3da697ede 181 Gene3D G3DSA:1.20.1270.340 1 98 2.3E-14 T 11-10-2018 IPR038338 PriB/PriC superfamily VV93_v1c03290 599dbe02f5f9e1b1ae03507fd03a03a0 490 Pfam PF03023 MviN-like protein 27 457 1.3E-18 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c11120 43934dd8cf00a46c7a55802aacc3b3da 198 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 9 197 7.4E-90 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VV93_v1c11120 43934dd8cf00a46c7a55802aacc3b3da 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 11 196 5.4E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c11120 43934dd8cf00a46c7a55802aacc3b3da 198 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 8 197 26.264 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 VV93_v1c11120 43934dd8cf00a46c7a55802aacc3b3da 198 PIRSF PIRSF006102 7 198 2.3E-64 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c01090 15543f6bbf3a2a13b0cc3f0fdd26dbe2 284 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 1 284 29.652 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VV93_v1c01090 15543f6bbf3a2a13b0cc3f0fdd26dbe2 284 Gene3D G3DSA:1.10.357.140 19 179 1.1E-42 T 11-10-2018 VV93_v1c01090 15543f6bbf3a2a13b0cc3f0fdd26dbe2 284 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 8 283 3.8E-107 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 VV93_v1c01090 15543f6bbf3a2a13b0cc3f0fdd26dbe2 284 Pfam PF01040 UbiA prenyltransferase family 24 266 4.0E-69 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 VV93_v1c28310 84875da9773d1c49592de630c5c13522 448 Pfam PF01554 MatE 22 181 1.4E-26 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c28310 84875da9773d1c49592de630c5c13522 448 Pfam PF01554 MatE 245 406 1.1E-23 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c28310 84875da9773d1c49592de630c5c13522 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 413 6.9E-59 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c28310 84875da9773d1c49592de630c5c13522 448 PIRSF PIRSF006603 1 446 2.1E-131 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c11830 194102b15527d935139ca0c77b161e6b 519 Pfam PF01740 STAS domain 417 503 1.1E-5 T 11-10-2018 IPR002645 STAS domain VV93_v1c11830 194102b15527d935139ca0c77b161e6b 519 SUPERFAMILY SSF52091 416 498 5.1E-11 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c11830 194102b15527d935139ca0c77b161e6b 519 Pfam PF00916 Sulfate permease family 13 374 2.2E-57 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 VV93_v1c11830 194102b15527d935139ca0c77b161e6b 519 Gene3D G3DSA:3.30.750.24 409 499 2.7E-26 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c18950 36a133bc35863cdf5effd5618a4fe610 321 SUPERFAMILY SSF53822 42 253 3.53E-20 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c18950 36a133bc35863cdf5effd5618a4fe610 321 Pfam PF04392 ABC transporter substrate binding protein 29 321 2.5E-115 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein VV93_v1c18950 36a133bc35863cdf5effd5618a4fe610 321 Gene3D G3DSA:3.40.50.2300 143 314 5.3E-104 T 11-10-2018 VV93_v1c18950 36a133bc35863cdf5effd5618a4fe610 321 Gene3D G3DSA:3.40.50.2300 46 292 5.3E-104 T 11-10-2018 VV93_v1c07140 cf62bf01b1363bf84f4247440a383488 204 Gene3D G3DSA:1.25.40.10 22 203 6.0E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c07140 cf62bf01b1363bf84f4247440a383488 204 PIRSF PIRSF006170 1 204 4.4E-52 T 11-10-2018 IPR026039 Uncharacterised protein family UPF0070 VV93_v1c07140 cf62bf01b1363bf84f4247440a383488 204 Pfam PF09976 Tetratricopeptide repeat-like domain 15 204 7.0E-53 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 VV93_v1c13490 44c3c7d4eeaea74a03edfd9a4e15af35 400 Gene3D G3DSA:3.40.50.720 1 399 5.6E-181 T 11-10-2018 VV93_v1c13490 44c3c7d4eeaea74a03edfd9a4e15af35 400 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 395 57.912 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c13490 44c3c7d4eeaea74a03edfd9a4e15af35 400 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 2.6E-112 T 11-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c13490 44c3c7d4eeaea74a03edfd9a4e15af35 400 Pfam PF07055 Enoyl reductase FAD binding domain 326 389 1.1E-31 T 11-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c13490 44c3c7d4eeaea74a03edfd9a4e15af35 400 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 1.3E-37 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 SUPERFAMILY SSF46785 5 86 3.95E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 7.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c31880 0a17fca010785d3ef048ed3283e8ec46 273 Gene3D G3DSA:1.10.10.10 3 88 4.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c20600 5eabb06658e513489e6c3b6a6030cd15 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 40.256 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 VV93_v1c20600 5eabb06658e513489e6c3b6a6030cd15 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 6.4E-188 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 VV93_v1c04260 7e6fe567ce8961a78178ea5d673319fa 211 Pfam PF05494 MlaC protein 33 198 1.6E-46 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VV93_v1c04260 7e6fe567ce8961a78178ea5d673319fa 211 PIRSF PIRSF004649 1 211 7.5E-55 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VV93_v1c04260 7e6fe567ce8961a78178ea5d673319fa 211 Gene3D G3DSA:3.10.450.710 25 203 2.8E-38 T 11-10-2018 VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 Pfam PF00704 Glycosyl hydrolases family 18 25 416 2.0E-81 T 11-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 Gene3D G3DSA:3.10.50.10 312 390 6.9E-120 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 SUPERFAMILY SSF51445 19 417 3.37E-79 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 ProSitePatterns PS01095 Chitinases family 18 active site. 169 177 - T 11-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 SMART SM00636 23 416 3.9E-106 T 11-10-2018 IPR011583 Chitinase II GO:0008061 VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 Gene3D G3DSA:3.20.20.80 23 422 6.9E-120 T 11-10-2018 VV93_v1c40380 4a5c7e7358d54b3a3b7f7d38485fa848 432 SUPERFAMILY SSF54556 313 387 5.04E-18 T 11-10-2018 IPR029070 Chitinase insertion domain superfamily VV93_v1c03300 0043fe049b426607ee9cffe95d0a06e2 350 Gene3D G3DSA:3.40.50.720 10 314 1.3E-136 T 11-10-2018 VV93_v1c03300 0043fe049b426607ee9cffe95d0a06e2 350 Pfam PF02719 Polysaccharide biosynthesis protein 12 287 9.7E-107 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VV93_v1c03300 0043fe049b426607ee9cffe95d0a06e2 350 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 290 337 8.6E-26 T 11-10-2018 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 VV93_v1c03300 0043fe049b426607ee9cffe95d0a06e2 350 SUPERFAMILY SSF51735 9 269 9.21E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03300 0043fe049b426607ee9cffe95d0a06e2 350 Gene3D G3DSA:3.90.25.30 171 327 1.3E-136 T 11-10-2018 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 Gene3D G3DSA:2.10.10.20 433 475 5.5E-16 T 11-10-2018 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 SUPERFAMILY SSF53955 88 349 4.5E-52 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 Pfam PF00182 Chitinase class I 105 325 2.0E-30 T 11-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 Gene3D G3DSA:3.30.20.10 177 247 1.5E-76 T 11-10-2018 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 Gene3D G3DSA:1.10.530.10 104 345 1.5E-76 T 11-10-2018 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 SMART SM00495 433 475 4.5E-16 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 SMART SM00495 515 560 1.4 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 Pfam PF02839 Carbohydrate binding domain 450 472 2.5E-5 T 11-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c07230 256f013b920f8862a084da9dafdd9b12 563 SUPERFAMILY SSF51055 434 475 1.23E-14 T 11-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 VV93_v1c36080 9d75a915a6f2ab3e361c86088802c55b 126 SUPERFAMILY SSF54403 42 115 3.19E-17 T 11-10-2018 VV93_v1c36080 9d75a915a6f2ab3e361c86088802c55b 126 Gene3D G3DSA:3.10.450.10 38 118 1.1E-10 T 11-10-2018 VV93_v1c36080 9d75a915a6f2ab3e361c86088802c55b 126 ProSitePatterns PS00287 Cysteine proteases inhibitors signature. 80 93 - T 11-10-2018 IPR018073 Proteinase inhibitor I25, cystatin, conserved site VV93_v1c36080 9d75a915a6f2ab3e361c86088802c55b 126 Pfam PF00031 Cystatin domain 44 108 6.8E-8 T 11-10-2018 IPR000010 Cystatin domain GO:0004869 VV93_v1c33810 6c4d355915467768d55b5373494fbec6 404 Pfam PF10082 Putative beta-barrel porin 2 33 402 4.1E-31 T 11-10-2018 IPR018759 Putative beta-barrel porin 2 VV93_v1c33810 6c4d355915467768d55b5373494fbec6 404 SUPERFAMILY SSF56935 164 393 5.04E-5 T 11-10-2018 VV93_v1c21350 7434e5979c4c9ed01be2a5571c8bb106 176 Pfam PF04315 Elongation factor P hydroxylase 11 168 2.3E-73 T 11-10-2018 IPR007411 Elongation factor P hydroxylase VV93_v1c34000 6d9963d65d35d399d78a664082e2eea4 367 Pfam PF01553 Acyltransferase 92 240 5.7E-10 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c34000 6d9963d65d35d399d78a664082e2eea4 367 SUPERFAMILY SSF69593 86 314 1.57E-8 T 11-10-2018 VV93_v1c02430 f264debd57b2a1be53898b43da2e1e64 77 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 26 75 8.7E-10 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA VV93_v1c20020 da13b09da6b0f5f53f3e7b2ba6f13641 248 Pfam PF05618 Putative ATP-dependant zinc protease 108 243 2.1E-47 T 11-10-2018 VV93_v1c20020 da13b09da6b0f5f53f3e7b2ba6f13641 248 Gene3D G3DSA:2.40.70.10 105 235 9.9E-42 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c20020 da13b09da6b0f5f53f3e7b2ba6f13641 248 SUPERFAMILY SSF50630 108 242 3.33E-42 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily VV93_v1c32020 8da92350266716cb4e367e339b2b519b 108 Gene3D G3DSA:1.10.10.10 8 108 1.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c32020 8da92350266716cb4e367e339b2b519b 108 Pfam PF01638 HxlR-like helix-turn-helix 19 105 8.0E-20 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type VV93_v1c32020 8da92350266716cb4e367e339b2b519b 108 SUPERFAMILY SSF46785 8 105 2.47E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c12530 ddab7ee4f70ca17d337dc8c8cbd3a23e 187 Pfam PF16036 Chalcone isomerase-like 49 184 7.0E-8 T 11-10-2018 IPR016087 Chalcone isomerase GO:0016872 VV93_v1c40670 b852e2fa879a6da45971b0eb5afd46c5 325 SUPERFAMILY SSF56935 22 325 2.2E-48 T 11-10-2018 VV93_v1c40670 b852e2fa879a6da45971b0eb5afd46c5 325 Pfam PF13609 Gram-negative porin 7 301 1.9E-28 T 11-10-2018 VV93_v1c40670 b852e2fa879a6da45971b0eb5afd46c5 325 Gene3D G3DSA:2.40.160.10 22 325 2.2E-53 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c31920 737bc1ca0a489d3be50795bc3644a059 125 PIRSF PIRSF005610 1 119 6.4E-13 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VV93_v1c31920 737bc1ca0a489d3be50795bc3644a059 125 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 121 9.1E-30 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB VV93_v1c17820 db597222b30a0a730465f831265c5c5e 148 SUPERFAMILY SSF158682 2 147 3.01E-30 T 11-10-2018 IPR029024 TerB-like VV93_v1c17820 db597222b30a0a730465f831265c5c5e 148 Gene3D G3DSA:1.10.3680.10 1 139 2.1E-19 T 11-10-2018 IPR029024 TerB-like VV93_v1c17820 db597222b30a0a730465f831265c5c5e 148 Pfam PF05099 Tellurite resistance protein TerB 9 143 1.3E-39 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal VV93_v1c36210 bda57ea7db3d96b887d9d6636d5b9580 316 SUPERFAMILY SSF81345 7 313 1.44E-58 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c36210 bda57ea7db3d96b887d9d6636d5b9580 316 Gene3D G3DSA:1.10.3470.10 6 315 3.4E-59 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c36210 bda57ea7db3d96b887d9d6636d5b9580 316 Pfam PF01032 FecCD transport family 27 312 1.4E-54 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 SUPERFAMILY SSF53850 90 288 2.67E-41 T 11-10-2018 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 SUPERFAMILY SSF46785 1 86 8.86E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 Gene3D G3DSA:3.40.190.290 92 289 6.4E-48 T 11-10-2018 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 Pfam PF03466 LysR substrate binding domain 88 287 4.0E-45 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 Gene3D G3DSA:1.10.10.10 1 91 6.8E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.5E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c13950 5c5ff8a2c2deb3d377a396e84d9d0fd3 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c11670 22aa13ba756ff19bc80c11cf3b8fe4e5 213 SUPERFAMILY SSF48452 75 188 1.17E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c11670 22aa13ba756ff19bc80c11cf3b8fe4e5 213 Gene3D G3DSA:1.25.40.10 116 208 4.1E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c35190 a79130db63694166a1c11d4886623f05 154 PIRSF PIRSF028065 1 149 5.9E-81 T 11-10-2018 IPR016865 Inner membrane protein RclC VV93_v1c35190 a79130db63694166a1c11d4886623f05 154 Pfam PF04224 Protein of unknown function, DUF417 5 146 2.0E-42 T 11-10-2018 IPR007339 Inner membrane protein RclC-like VV93_v1c44850 1b4751dbaf77612af00a31aa161332ee 389 Pfam PF07470 Glycosyl Hydrolase Family 88 47 379 3.0E-26 T 11-10-2018 IPR010905 Glycosyl hydrolase, family 88 VV93_v1c44850 1b4751dbaf77612af00a31aa161332ee 389 SUPERFAMILY SSF48208 20 389 2.78E-99 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c44850 1b4751dbaf77612af00a31aa161332ee 389 Gene3D G3DSA:1.50.10.10 7 389 1.4E-115 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c05410 e93debfac3d877b1665430174968b3f0 153 Gene3D G3DSA:2.30.30.220 1 137 3.4E-52 T 11-10-2018 IPR036760 SspB-like superfamily VV93_v1c05410 e93debfac3d877b1665430174968b3f0 153 SUPERFAMILY SSF101738 1 115 5.23E-49 T 11-10-2018 IPR036760 SspB-like superfamily VV93_v1c05410 e93debfac3d877b1665430174968b3f0 153 PIRSF PIRSF005276 1 153 5.2E-62 T 11-10-2018 IPR007481 Stringent starvation protein B VV93_v1c05410 e93debfac3d877b1665430174968b3f0 153 Pfam PF04386 Stringent starvation protein B 4 153 5.3E-41 T 11-10-2018 IPR007481 Stringent starvation protein B VV93_v1c07940 a426ca18bc1f05d02cf95307a385ce30 154 Gene3D G3DSA:3.40.50.2020 1 152 1.1E-40 T 11-10-2018 VV93_v1c07940 a426ca18bc1f05d02cf95307a385ce30 154 Pfam PF00156 Phosphoribosyl transferase domain 32 144 6.1E-13 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c07940 a426ca18bc1f05d02cf95307a385ce30 154 SUPERFAMILY SSF53271 5 146 1.26E-27 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c07940 a426ca18bc1f05d02cf95307a385ce30 154 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 153 37.625 T 11-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 VV93_v1c10880 e33b5609277679707c4ef1b8efbf33b1 444 Pfam PF01627 Hpt domain 351 427 8.2E-12 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c10880 e33b5609277679707c4ef1b8efbf33b1 444 Gene3D G3DSA:1.20.120.160 328 439 2.5E-18 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c10880 e33b5609277679707c4ef1b8efbf33b1 444 SUPERFAMILY SSF47226 332 437 1.27E-17 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c34210 32dc1716a7a4c5d4fef03648396d191f 342 Pfam PF01757 Acyltransferase family 6 314 2.4E-30 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VV93_v1c18860 1422448c5127392b5bb05ea117088110 529 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 529 381.052 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VV93_v1c18860 1422448c5127392b5bb05ea117088110 529 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 516 3.8E-300 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VV93_v1c18860 1422448c5127392b5bb05ea117088110 529 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 516 0.0 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 VV93_v1c17640 45fa5db6a8ee32aa8883c1668f487b39 155 Pfam PF07811 TadE-like protein 9 49 2.3E-10 T 11-10-2018 IPR012495 TadE-like VV93_v1c15650 2d2c740350cad303c05790e5e5de3f26 158 Pfam PF05751 FixH 7 147 1.4E-43 T 11-10-2018 IPR008620 Nitrogen fixation protein FixH VV93_v1c15700 0b36a0fe56ccaa351a7d94627c31dd89 315 SUPERFAMILY SSF52402 158 309 2.26E-24 T 11-10-2018 VV93_v1c15700 0b36a0fe56ccaa351a7d94627c31dd89 315 SUPERFAMILY SSF52402 4 158 4.19E-26 T 11-10-2018 VV93_v1c15700 0b36a0fe56ccaa351a7d94627c31dd89 315 Pfam PF00582 Universal stress protein family 4 148 6.0E-15 T 11-10-2018 IPR006016 UspA VV93_v1c15700 0b36a0fe56ccaa351a7d94627c31dd89 315 Pfam PF00582 Universal stress protein family 178 301 1.3E-15 T 11-10-2018 IPR006016 UspA VV93_v1c15700 0b36a0fe56ccaa351a7d94627c31dd89 315 Gene3D G3DSA:3.40.50.12370 1 312 4.0E-114 T 11-10-2018 VV93_v1c13040 c3eb2d8d9a57b0227e8724ce7a4b058d 77 Pfam PF06667 Phage shock protein B 4 74 9.6E-32 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VV93_v1c13040 c3eb2d8d9a57b0227e8724ce7a4b058d 77 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 75 4.1E-35 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 VV93_v1c23080 79b1f22cf054ed2d04f4983851d10e6f 446 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 446 4.9E-205 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VV93_v1c23080 79b1f22cf054ed2d04f4983851d10e6f 446 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 256 8.6E-115 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VV93_v1c23080 79b1f22cf054ed2d04f4983851d10e6f 446 Pfam PF11973 NQRA C-terminal domain 261 310 5.2E-21 T 11-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 VV93_v1c23080 79b1f22cf054ed2d04f4983851d10e6f 446 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 446 46.157 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 Pfam PF05199 GMC oxidoreductase 387 524 3.2E-41 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 Gene3D G3DSA:3.50.50.60 4 529 1.9E-184 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 Gene3D G3DSA:3.30.560.10 43 467 1.9E-184 T 11-10-2018 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 PIRSF PIRSF000137 1 536 5.7E-150 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 SUPERFAMILY SSF51905 2 532 1.31E-92 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 Pfam PF00732 GMC oxidoreductase 4 294 2.0E-90 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 VV93_v1c20070 2e40667b1677533831bac454e2aec3bd 551 SUPERFAMILY SSF54373 289 472 9.81E-47 T 11-10-2018 VV93_v1c19400 7b569d343defa33233d81c1a78e0ac24 226 Pfam PF13737 Transposase DDE domain 19 129 1.5E-43 T 11-10-2018 IPR025668 Transposase DDE domain VV93_v1c01660 772e18e4e6af01cfb06020eecdf0bda0 544 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 56.94 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VV93_v1c01660 772e18e4e6af01cfb06020eecdf0bda0 544 SUPERFAMILY SSF56112 94 436 2.29E-45 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily VV93_v1c01660 772e18e4e6af01cfb06020eecdf0bda0 544 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 8.8E-176 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 VV93_v1c01660 772e18e4e6af01cfb06020eecdf0bda0 544 Pfam PF03109 ABC1 family 112 231 4.0E-36 T 11-10-2018 IPR004147 UbiB domain VV93_v1c16200 00a19241c840e22b0107dcb54cc0dec5 67 PIRSF PIRSF037225 1 65 7.4E-28 T 11-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 VV93_v1c16200 00a19241c840e22b0107dcb54cc0dec5 67 Pfam PF14255 Cysteine-rich CPXCG 10 59 5.3E-20 T 11-10-2018 IPR025990 Cysteine-rich CPXCG protein VV93_v1c17460 ee7d4f91c7e31d70787a2cd0b96c0ed2 158 Pfam PF13419 Haloacid dehalogenase-like hydrolase 25 132 5.1E-10 T 11-10-2018 VV93_v1c17460 ee7d4f91c7e31d70787a2cd0b96c0ed2 158 Gene3D G3DSA:3.40.50.1000 2 158 1.5E-29 T 11-10-2018 IPR023214 HAD superfamily VV93_v1c17460 ee7d4f91c7e31d70787a2cd0b96c0ed2 158 SUPERFAMILY SSF56784 1 141 2.21E-23 T 11-10-2018 IPR036412 HAD-like superfamily VV93_v1c44240 774c881b497cbea2beeab02b505541af 305 Pfam PF00892 EamA-like transporter family 164 292 4.4E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c44240 774c881b497cbea2beeab02b505541af 305 Pfam PF00892 EamA-like transporter family 19 149 1.1E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c44240 774c881b497cbea2beeab02b505541af 305 SUPERFAMILY SSF103481 74 151 4.18E-5 T 11-10-2018 VV93_v1c44240 774c881b497cbea2beeab02b505541af 305 SUPERFAMILY SSF103481 202 299 5.62E-10 T 11-10-2018 VV93_v1c41100 93598cf8f2092a4d0ac08beb1774528f 183 Pfam PF13505 Outer membrane protein beta-barrel domain 8 183 1.7E-9 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c41100 93598cf8f2092a4d0ac08beb1774528f 183 SUPERFAMILY SSF56925 29 183 5.89E-14 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c41100 93598cf8f2092a4d0ac08beb1774528f 183 Gene3D G3DSA:2.40.160.20 19 183 3.3E-15 T 11-10-2018 VV93_v1c01570 c89844ea40f8890c214f1f3212a91ad1 148 SMART SM00360 62 134 1.1E-20 T 11-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VV93_v1c01570 c89844ea40f8890c214f1f3212a91ad1 148 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 7.8E-18 T 11-10-2018 IPR000504 RNA recognition motif domain GO:0003676 VV93_v1c01570 c89844ea40f8890c214f1f3212a91ad1 148 SUPERFAMILY SSF54928 44 139 8.46E-27 T 11-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 VV93_v1c01570 c89844ea40f8890c214f1f3212a91ad1 148 Gene3D G3DSA:3.30.70.330 47 144 4.1E-26 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VV93_v1c21340 e0ae9f3a0558879c85135ca4c9d5dffe 87 Pfam PF08891 YfcL protein 4 84 5.5E-32 T 11-10-2018 IPR014987 Uncharacterised protein family YfcL VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 Gene3D G3DSA:3.40.50.300 30 323 3.2E-70 T 11-10-2018 VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 4 385 1.9E-196 T 11-10-2018 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 SUPERFAMILY SSF52540 42 273 1.25E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 SMART SM00382 52 253 1.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 Pfam PF00005 ABC transporter 44 195 1.1E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c35180 042a856c6b5c6a3b098b2955901bb6d5 397 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c29290 563afa412feb9a50ebedca6b289b0164 136 SUPERFAMILY SSF46689 1 110 8.96E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c29290 563afa412feb9a50ebedca6b289b0164 136 Pfam PF13551 Winged helix-turn helix 2 61 2.0E-13 T 11-10-2018 VV93_v1c29290 563afa412feb9a50ebedca6b289b0164 136 Gene3D G3DSA:1.10.10.10 2 56 3.8E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c29290 563afa412feb9a50ebedca6b289b0164 136 Pfam PF13592 Winged helix-turn helix 77 134 1.9E-16 T 11-10-2018 IPR025959 Winged helix-turn helix domain VV93_v1c07240 42caa6ba60ba1e4fd39e871051e38dd2 197 Pfam PF01184 GPR1/FUN34/yaaH family 3 175 1.0E-35 T 11-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VV93_v1c07240 42caa6ba60ba1e4fd39e871051e38dd2 197 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 7 16 - T 11-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 VV93_v1c20800 431312cce890d4d87f83b823b31e4252 129 Gene3D G3DSA:2.60.40.3230 18 128 6.8E-27 T 11-10-2018 IPR038483 YcfL-like superfamily VV93_v1c20800 431312cce890d4d87f83b823b31e4252 129 Pfam PF07233 Protein of unknown function (DUF1425) 35 125 4.6E-28 T 11-10-2018 IPR010824 Protein of unknown function DUF1425 VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 PIRSF PIRSF006230 2 280 3.0E-105 T 11-10-2018 IPR016478 GTPase, MTG1 VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 Gene3D G3DSA:3.40.50.300 6 174 7.7E-44 T 11-10-2018 VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 6 275 3.7E-108 T 11-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 Pfam PF01926 50S ribosome-binding GTPase 120 186 1.1E-14 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 Gene3D G3DSA:1.10.1580.10 177 268 2.6E-30 T 11-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily VV93_v1c35810 fe6ee8221434872fb1a12ede7a5f60e5 314 SUPERFAMILY SSF52540 12 186 9.14E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34090 6336ee0de80f912dd236b208d559f279 230 Pfam PF01618 MotA/TolQ/ExbB proton channel family 95 194 4.1E-22 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c45510 3826a3e64d456ead198bd32ee2f91213 84 SUPERFAMILY SSF52091 5 81 3.73E-10 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c45510 3826a3e64d456ead198bd32ee2f91213 84 Pfam PF13466 STAS domain 6 80 1.3E-10 T 11-10-2018 IPR002645 STAS domain VV93_v1c45510 3826a3e64d456ead198bd32ee2f91213 84 Gene3D G3DSA:3.30.750.24 2 83 3.8E-7 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c27340 10ce6e4ad02671c37fca7ae5a9dfe88d 297 SUPERFAMILY SSF51730 22 294 7.65E-96 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like VV93_v1c27340 10ce6e4ad02671c37fca7ae5a9dfe88d 297 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 2.3E-101 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 VV93_v1c27340 10ce6e4ad02671c37fca7ae5a9dfe88d 297 Gene3D G3DSA:3.20.20.220 1 297 6.2E-113 T 11-10-2018 VV93_v1c27340 10ce6e4ad02671c37fca7ae5a9dfe88d 297 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 3.7E-102 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 VV93_v1c24080 550629162594135fc3b308e52e639d03 133 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 36 129 4.0E-5 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c24080 550629162594135fc3b308e52e639d03 133 PIRSF PIRSF029225 2 133 8.8E-49 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c24080 550629162594135fc3b308e52e639d03 133 Gene3D G3DSA:3.40.50.10220 35 133 8.4E-27 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c24080 550629162594135fc3b308e52e639d03 133 SUPERFAMILY SSF102220 30 133 4.45E-31 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c24080 550629162594135fc3b308e52e639d03 133 Pfam PF03603 DNA polymerase III psi subunit 3 130 1.1E-36 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 Pfam PF17201 Cache 3/Cache 2 fusion domain 170 262 7.7E-8 T 11-10-2018 IPR033462 Cache 3/Cache 2 fusion domain VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 Gene3D G3DSA:3.30.450.20 145 267 8.7E-16 T 11-10-2018 VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 SMART SM00267 353 523 7.2E-53 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 Gene3D G3DSA:3.30.70.270 350 524 7.1E-52 T 11-10-2018 VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 518 3.6E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 521 1.6E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c13280 d95b342b3bc06637937050561ccbba78 530 SUPERFAMILY SSF55073 371 522 1.37E-44 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c17090 416d908bb355502545861efe944e55bc 406 SUPERFAMILY SSF51338 1 397 2.16E-26 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c17090 416d908bb355502545861efe944e55bc 406 Pfam PF01979 Amidohydrolase family 56 373 4.8E-13 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 VV93_v1c17090 416d908bb355502545861efe944e55bc 406 SUPERFAMILY SSF51556 59 358 1.26E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase VV93_v1c17090 416d908bb355502545861efe944e55bc 406 TIGRFAM TIGR01224 hutI: imidazolonepropionase 26 396 2.3E-152 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17090 416d908bb355502545861efe944e55bc 406 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 398 40.771 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 VV93_v1c17090 416d908bb355502545861efe944e55bc 406 Gene3D G3DSA:2.30.40.10 7 395 5.4E-158 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 VV93_v1c17090 416d908bb355502545861efe944e55bc 406 Gene3D G3DSA:3.20.20.140 60 358 5.4E-158 T 11-10-2018 VV93_v1c21510 6465d03ad9320729cbad837ab0404afb 160 Pfam PF03918 Cytochrome C biogenesis protein 9 151 1.5E-55 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family VV93_v1c21510 6465d03ad9320729cbad837ab0404afb 160 Gene3D G3DSA:1.10.8.640 20 106 6.0E-37 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VV93_v1c38510 b032a47ac1c5d13845dc505210d81532 384 Gene3D G3DSA:1.20.1250.20 7 192 1.2E-16 T 11-10-2018 VV93_v1c38510 b032a47ac1c5d13845dc505210d81532 384 Gene3D G3DSA:1.20.1250.20 202 379 8.1E-12 T 11-10-2018 VV93_v1c38510 b032a47ac1c5d13845dc505210d81532 384 SUPERFAMILY SSF103473 11 377 2.88E-38 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c38510 b032a47ac1c5d13845dc505210d81532 384 Pfam PF07690 Major Facilitator Superfamily 16 341 1.2E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c35110 9be2d40a5b04be7943117eb62e65c31c 221 Pfam PF01551 Peptidase family M23 84 179 1.8E-18 T 11-10-2018 IPR016047 Peptidase M23 VV93_v1c35110 9be2d40a5b04be7943117eb62e65c31c 221 SUPERFAMILY SSF51261 56 179 4.55E-22 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c35110 9be2d40a5b04be7943117eb62e65c31c 221 Gene3D G3DSA:2.70.70.10 58 184 1.0E-22 T 11-10-2018 IPR011055 Duplicated hybrid motif VV93_v1c20260 d1f9928125852b0d360570d7df80c114 82 Gene3D G3DSA:1.10.1900.30 9 76 4.5E-36 T 11-10-2018 IPR038191 YciN superfamily VV93_v1c20260 d1f9928125852b0d360570d7df80c114 82 Pfam PF10692 Protein of unknown function (DUF2498) 4 80 4.4E-42 T 11-10-2018 IPR019633 Protein of unknown function DUF2498 VV93_v1c40950 153acf1373a212dd685c85a17e62ad56 142 SUPERFAMILY SSF54593 5 130 2.2E-15 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c40950 153acf1373a212dd685c85a17e62ad56 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 126 3.2E-4 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c40950 153acf1373a212dd685c85a17e62ad56 142 Gene3D G3DSA:3.10.180.10 5 140 2.5E-12 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c34350 5bee5e9075f1576ff919134e102219a8 402 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 7.1E-25 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 VV93_v1c34350 5bee5e9075f1576ff919134e102219a8 402 Pfam PF07670 Nucleoside recognition 90 185 2.1E-7 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c34350 5bee5e9075f1576ff919134e102219a8 402 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 399 1.7E-71 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 VV93_v1c34350 5bee5e9075f1576ff919134e102219a8 402 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 399 4.8E-139 T 11-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 VV93_v1c05330 72a7c33597efe7f1a598b7a4d87576b3 149 PIRSF PIRSF006318 1 137 4.3E-51 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 VV93_v1c05330 72a7c33597efe7f1a598b7a4d87576b3 149 Pfam PF06295 Protein of unknown function (DUF1043) 6 131 1.2E-45 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 VV93_v1c14940 ba5607f6888d8386d27338a747a5517a 477 Pfam PF13807 G-rich domain on putative tyrosine kinase 362 442 1.3E-6 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain VV93_v1c03850 460439edd27cc94ddaf0fb344c1bd416 300 TIGRFAM TIGR03899 TIGR03899: TIGR03899 family protein 39 288 2.2E-107 T 11-10-2018 IPR021254 Protein of unknown function DUF2806 VV93_v1c03850 460439edd27cc94ddaf0fb344c1bd416 300 Pfam PF10987 Protein of unknown function (DUF2806) 60 278 4.1E-88 T 11-10-2018 IPR021254 Protein of unknown function DUF2806 VV93_v1c04140 441a80e334bb34d8555e23d689b4d13e 148 SUPERFAMILY SSF55804 1 147 3.79E-42 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c04140 441a80e334bb34d8555e23d689b4d13e 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 147 4.2E-53 T 11-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 VV93_v1c04140 441a80e334bb34d8555e23d689b4d13e 148 Gene3D G3DSA:3.40.930.10 1 148 8.3E-54 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 VV93_v1c04140 441a80e334bb34d8555e23d689b4d13e 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 147 8.4E-39 T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c04140 441a80e334bb34d8555e23d689b4d13e 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain VV93_v1c30200 aaf2a0fabdb1a18cfdb53b3f3e9ef693 69 Pfam PF11686 Protein of unknown function (DUF3283) 4 64 6.0E-35 T 11-10-2018 IPR021700 Protein of unknown function DUF3283 VV93_v1c27220 4783a5c3ec5ce2249f42795e14863dd9 196 Pfam PF05137 Fimbrial assembly protein (PilN) 102 177 7.0E-15 T 11-10-2018 IPR007813 Fimbrial assembly PilN VV93_v1c07510 aa2ceaab7ff68f02d0ebf990ed4d132d 145 Pfam PF10980 Protein of unknown function (DUF2787) 14 139 9.0E-41 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c07510 aa2ceaab7ff68f02d0ebf990ed4d132d 145 Gene3D G3DSA:3.10.450.430 2 141 1.1E-30 T 11-10-2018 VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 Gene3D G3DSA:3.40.50.450 121 450 2.9E-125 T 11-10-2018 VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 Pfam PF14793 Domain of unknown function (DUF4478) 4 109 6.4E-51 T 11-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 Pfam PF03641 Possible lysine decarboxylase 187 325 3.5E-34 T 11-10-2018 IPR031100 LOG family VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 Pfam PF11892 Domain of unknown function (DUF3412) 330 450 3.2E-57 T 11-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 SUPERFAMILY SSF102405 119 327 7.48E-41 T 11-10-2018 VV93_v1c08210 888f52ab1c5ddaed817e12b3b8125d6d 458 Gene3D G3DSA:3.30.1850.10 1 120 1.6E-57 T 11-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 VV93_v1c22380 7b8b28aace0ed2ee5becbe4696c33a70 417 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 4 395 3.0E-111 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VV93_v1c22380 7b8b28aace0ed2ee5becbe4696c33a70 417 Pfam PF00860 Permease family 3 371 3.0E-91 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c22380 7b8b28aace0ed2ee5becbe4696c33a70 417 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 319 339 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 VV93_v1c23960 55e964d1904c8098b3cea99934085a86 203 Pfam PF10144 Bacterial virulence factor haemolysin 7 151 2.2E-38 T 11-10-2018 IPR019305 Uncharacterised protein family Smp VV93_v1c06650 4d8e9f81756d353e4051092bbcdc5751 291 SUPERFAMILY SSF52980 34 287 1.26E-55 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 VV93_v1c06650 4d8e9f81756d353e4051092bbcdc5751 291 Gene3D G3DSA:3.40.91.10 6 290 6.0E-97 T 11-10-2018 VV93_v1c06650 4d8e9f81756d353e4051092bbcdc5751 291 Pfam PF07832 Cfr10I/Bse634I restriction endonuclease 11 289 1.5E-56 T 11-10-2018 IPR012415 Restriction endonuclease, type II, Cfr10I/Bse634I VV93_v1c22200 09ef9abc55f07f0f7bfd4316b8a8835d 111 Gene3D G3DSA:1.10.260.40 14 85 8.7E-15 T 11-10-2018 VV93_v1c22200 09ef9abc55f07f0f7bfd4316b8a8835d 111 SMART SM00530 27 82 8.3E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c22200 09ef9abc55f07f0f7bfd4316b8a8835d 111 SUPERFAMILY SSF47413 17 80 1.51E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c22200 09ef9abc55f07f0f7bfd4316b8a8835d 111 Pfam PF01381 Helix-turn-helix 28 81 5.3E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c30460 8fb2d8d532de9ae58d0eafd84276e2de 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 38 113 6.9E-10 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 VV93_v1c30460 8fb2d8d532de9ae58d0eafd84276e2de 134 SUPERFAMILY SSF51316 8 131 2.93E-33 T 11-10-2018 IPR011057 Mss4-like superfamily VV93_v1c30460 8fb2d8d532de9ae58d0eafd84276e2de 134 Gene3D G3DSA:2.170.150.70 14 131 1.8E-37 T 11-10-2018 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 8.3E-71 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 Gene3D G3DSA:2.40.50.140 1 124 8.4E-64 T 11-10-2018 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PIRSF PIRSF002133 1 124 2.2E-54 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.7E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 SUPERFAMILY SSF50249 3 123 2.4E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.98 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c27600 5ffbb7826d3b77841f4d614d00008e61 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.5E-42 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c22670 a2a535f1b5224445625f214afeb24224 169 PIRSF PIRSF002094 1 169 1.2E-38 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VV93_v1c22670 a2a535f1b5224445625f214afeb24224 169 SUPERFAMILY SSF111384 26 168 1.57E-29 T 11-10-2018 VV93_v1c22670 a2a535f1b5224445625f214afeb24224 169 Gene3D G3DSA:3.30.910.20 25 169 2.2E-34 T 11-10-2018 IPR024930 Skp domain superfamily VV93_v1c22670 a2a535f1b5224445625f214afeb24224 169 Pfam PF03938 Outer membrane protein (OmpH-like) 13 167 3.3E-25 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VV93_v1c22670 a2a535f1b5224445625f214afeb24224 169 SMART SM00935 15 169 1.1E-39 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 VV93_v1c42900 580f01c3d31a25c8d7ebbd7a3b814a23 590 Gene3D G3DSA:1.20.1730.10 21 506 9.1E-81 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily VV93_v1c42900 580f01c3d31a25c8d7ebbd7a3b814a23 590 Pfam PF00474 Sodium:solute symporter family 33 422 1.1E-36 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c04570 5bbe3505a9999518e30ddab2248e56bf 182 Gene3D G3DSA:1.20.144.10 96 182 2.0E-19 T 11-10-2018 VV93_v1c04570 5bbe3505a9999518e30ddab2248e56bf 182 Pfam PF01569 PAP2 superfamily 67 179 4.9E-21 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c04570 5bbe3505a9999518e30ddab2248e56bf 182 SUPERFAMILY SSF48317 14 179 4.32E-37 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VV93_v1c04570 5bbe3505a9999518e30ddab2248e56bf 182 SMART SM00014 68 177 2.5E-18 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 1.5E-9 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 1.5E-9 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 1.5E-9 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 1.5E-9 T 11-10-2018 IPR003004 GspF/PilC family VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 9.0E-27 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 4.3E-30 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 Gene3D G3DSA:1.20.81.30 59 176 2.6E-32 T 11-10-2018 VV93_v1c26660 3972164dab5104d9f288daf2d9932dc6 406 Gene3D G3DSA:1.20.81.30 257 370 1.3E-28 T 11-10-2018 VV93_v1c17710 e7ee69fe0c09c3e4b2e235b2536cce75 462 Pfam PF13629 Pilus formation protein N terminal region 23 92 6.7E-18 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal VV93_v1c17710 e7ee69fe0c09c3e4b2e235b2536cce75 462 Pfam PF00263 Bacterial type II and III secretion system protein 256 415 2.5E-40 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c17710 e7ee69fe0c09c3e4b2e235b2536cce75 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 403 417 4.7E-9 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c17710 e7ee69fe0c09c3e4b2e235b2536cce75 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 252 276 4.7E-9 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c17710 e7ee69fe0c09c3e4b2e235b2536cce75 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 380 398 4.7E-9 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c38210 5d6bdc131a40f357c46b9c26a14aec2c 124 Pfam PF10719 Late competence development protein ComFB 8 85 3.1E-13 T 11-10-2018 IPR019657 Late competence development protein ComFB VV93_v1c17750 570f14221853725d55e2ebe5798fcdcf 906 SUPERFAMILY SSF49363 680 730 8.89E-7 T 11-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 VV93_v1c17750 570f14221853725d55e2ebe5798fcdcf 906 Gene3D G3DSA:2.60.40.10 649 740 3.8E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold VV93_v1c17750 570f14221853725d55e2ebe5798fcdcf 906 ProSitePatterns PS00018 EF-hand calcium-binding domain. 456 468 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 Gene3D G3DSA:1.10.357.10 1 205 1.0E-92 T 11-10-2018 VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 7.4E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 7.4E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 SUPERFAMILY SSF46689 8 83 8.98E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 SUPERFAMILY SSF48498 90 197 2.06E-10 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VV93_v1c24820 9eb4305d4854e36bf2bc66b33d2d9c57 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 8.1E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 VV93_v1c02390 e81e46a4a57e2edff48e1b5fa3322e42 226 SUPERFAMILY SSF81324 126 218 8.11E-18 T 11-10-2018 VV93_v1c02390 e81e46a4a57e2edff48e1b5fa3322e42 226 Pfam PF07885 Ion channel 134 217 8.8E-17 T 11-10-2018 IPR013099 Potassium channel domain VV93_v1c02390 e81e46a4a57e2edff48e1b5fa3322e42 226 Gene3D G3DSA:1.10.287.70 124 225 2.8E-19 T 11-10-2018 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 SUPERFAMILY SSF53850 95 293 3.8E-27 T 11-10-2018 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 Gene3D G3DSA:3.40.190.10 103 286 7.6E-44 T 11-10-2018 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 Gene3D G3DSA:3.40.190.10 163 259 7.6E-44 T 11-10-2018 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 6.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 Pfam PF03466 LysR substrate binding domain 94 287 9.2E-23 T 11-10-2018 IPR005119 LysR, substrate-binding VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 Gene3D G3DSA:1.10.10.10 7 95 4.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c23860 3d509c9eef7d4035ba5c19581915bb87 307 SUPERFAMILY SSF46785 4 87 5.9E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c02340 c0454bc33badf9e161e612ac756caf34 279 SMART SM00382 40 232 9.4E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c02340 c0454bc33badf9e161e612ac756caf34 279 SUPERFAMILY SSF52540 6 254 9.35E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c02340 c0454bc33badf9e161e612ac756caf34 279 Gene3D G3DSA:3.40.50.300 3 279 1.8E-88 T 11-10-2018 VV93_v1c02340 c0454bc33badf9e161e612ac756caf34 279 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c02340 c0454bc33badf9e161e612ac756caf34 279 Pfam PF00005 ABC transporter 32 181 2.8E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 Gene3D G3DSA:1.10.60.30 28 102 1.6E-28 T 11-10-2018 VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 SUPERFAMILY SSF158710 28 170 1.57E-53 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 Gene3D G3DSA:1.10.60.30 104 175 8.0E-25 T 11-10-2018 VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 PIRSF PIRSF016183 1 175 4.5E-74 T 11-10-2018 IPR006839 Ribosome-associated, YjgA VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 10 172 24.003 T 11-10-2018 IPR006839 Ribosome-associated, YjgA VV93_v1c04060 62b4bcc7f103e957c5cedf321374a801 185 Pfam PF04751 Protein of unknown function (DUF615) 19 168 5.0E-58 T 11-10-2018 IPR006839 Ribosome-associated, YjgA VV93_v1c12770 44c56a939776b45dc26356e9109c6b66 212 Pfam PF02698 DUF218 domain 33 147 4.7E-23 T 11-10-2018 IPR003848 Domain of unknown function DUF218 VV93_v1c12770 44c56a939776b45dc26356e9109c6b66 212 Gene3D G3DSA:3.40.50.620 15 150 9.4E-28 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c12960 59ef010200bf5b8e46a48b2adcf5555c 260 Pfam PF11150 Protein of unknown function (DUF2927) 33 230 1.6E-64 T 11-10-2018 IPR021323 Protein of unknown function DUF2927 VV93_v1c14990 592787f0b192eaded9796f76578d1471 392 Pfam PF00534 Glycosyl transferases group 1 206 353 5.4E-17 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c14990 592787f0b192eaded9796f76578d1471 392 SUPERFAMILY SSF53756 4 369 4.24E-34 T 11-10-2018 VV93_v1c14990 592787f0b192eaded9796f76578d1471 392 Gene3D G3DSA:3.40.50.2000 198 358 3.8E-21 T 11-10-2018 VV93_v1c13460 12513114a3a37fedbffb17bc65387617 389 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 379 23.548 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VV93_v1c13460 12513114a3a37fedbffb17bc65387617 389 Gene3D G3DSA:1.20.1530.10 3 381 7.1E-148 T 11-10-2018 IPR023171 Na/H antiporter domain superfamily VV93_v1c13460 12513114a3a37fedbffb17bc65387617 389 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 373 1.5E-188 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VV93_v1c13460 12513114a3a37fedbffb17bc65387617 389 Pfam PF06965 Na+/H+ antiporter 1 7 373 3.5E-145 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 VV93_v1c06200 ec9fdaddbf19b77550e2da596a98a2cd 382 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 17 376 7.9E-149 T 11-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA VV93_v1c06200 ec9fdaddbf19b77550e2da596a98a2cd 382 Pfam PF08014 Domain of unknown function (DUF1704) 44 380 1.2E-114 T 11-10-2018 IPR012548 Protein of unknown function DUF1704 VV93_v1c06200 ec9fdaddbf19b77550e2da596a98a2cd 382 SMART SM01154 43 382 1.1E-155 T 11-10-2018 IPR012548 Protein of unknown function DUF1704 VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 166 187 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 54 70 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 35 54 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 268 294 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 418 435 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 142 166 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PRINTS PR01806 Virulence factor MviN signature 366 385 7.1E-76 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 5 512 9.8E-134 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 Pfam PF03023 MviN-like protein 30 475 6.8E-141 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 5 476 19.636 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c06250 8443436d5a92da9e48f5475b815c0ee0 520 PIRSF PIRSF002869 1 518 2.6E-151 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ VV93_v1c29150 fc11e8b3f1aa5a849a0397ded69adaa6 291 Hamap MF_00697 UPF0276 protein . 10 282 45.677 T 11-10-2018 IPR007801 Uncharacterised protein family UPF0276 VV93_v1c29150 fc11e8b3f1aa5a849a0397ded69adaa6 291 Pfam PF05114 Protein of unknown function (DUF692) 10 274 7.7E-107 T 11-10-2018 IPR007801 Uncharacterised protein family UPF0276 VV93_v1c29150 fc11e8b3f1aa5a849a0397ded69adaa6 291 SUPERFAMILY SSF51658 30 255 2.32E-6 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily VV93_v1c29150 fc11e8b3f1aa5a849a0397ded69adaa6 291 Gene3D G3DSA:3.20.20.150 7 284 8.4E-88 T 11-10-2018 VV93_v1c41440 0a9809a977c0179f7640fa9dfb7fa581 324 SUPERFAMILY SSF103481 39 138 1.83E-10 T 11-10-2018 VV93_v1c41440 0a9809a977c0179f7640fa9dfb7fa581 324 SUPERFAMILY SSF103481 212 294 7.06E-11 T 11-10-2018 VV93_v1c41440 0a9809a977c0179f7640fa9dfb7fa581 324 Pfam PF00892 EamA-like transporter family 4 136 4.1E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c41440 0a9809a977c0179f7640fa9dfb7fa581 324 Pfam PF00892 EamA-like transporter family 155 294 1.9E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c23480 d00f80035eeccb66f430860ba127e971 110 Pfam PF01588 Putative tRNA binding domain 14 107 1.0E-29 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 VV93_v1c23480 d00f80035eeccb66f430860ba127e971 110 SUPERFAMILY SSF50249 8 109 6.61E-32 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold VV93_v1c23480 d00f80035eeccb66f430860ba127e971 110 Gene3D G3DSA:2.40.50.140 1 110 7.9E-38 T 11-10-2018 VV93_v1c17760 f6873ae785e0d14379e632c62fa95673 177 Gene3D G3DSA:3.30.420.470 4 172 3.1E-12 T 11-10-2018 VV93_v1c17760 f6873ae785e0d14379e632c62fa95673 177 Pfam PF13358 DDE superfamily endonuclease 7 146 1.3E-27 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c23340 f73f735e086a51194b4a51b781e391b5 104 Pfam PF07130 YebG protein 1 72 1.7E-31 T 11-10-2018 IPR009813 Uncharacterised protein family YebG VV93_v1c23340 f73f735e086a51194b4a51b781e391b5 104 Gene3D G3DSA:1.10.10.710 21 102 9.4E-8 T 11-10-2018 IPR038627 YebG-like superfamily VV93_v1c36090 8c605047356c513da95f2765d5aa4e6b 308 SUPERFAMILY SSF56219 86 306 1.16E-24 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c36090 8c605047356c513da95f2765d5aa4e6b 308 Gene3D G3DSA:3.60.10.10 87 308 3.7E-20 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c36090 8c605047356c513da95f2765d5aa4e6b 308 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 93 298 5.4E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c11150 8d3c483e0430782943609ee67af874b7 115 SUPERFAMILY SSF47226 2 107 6.15E-22 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c11150 8d3c483e0430782943609ee67af874b7 115 Pfam PF01627 Hpt domain 24 102 1.0E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 VV93_v1c11150 8d3c483e0430782943609ee67af874b7 115 Gene3D G3DSA:1.20.120.160 1 112 3.0E-23 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 VV93_v1c04190 18544608a2a0f799f6d246984c6319b6 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 8 183 7.4E-49 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related VV93_v1c04190 18544608a2a0f799f6d246984c6319b6 187 PIRSF PIRSF028513 2 185 1.8E-32 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VV93_v1c04190 18544608a2a0f799f6d246984c6319b6 187 Gene3D G3DSA:2.60.450.10 59 186 4.1E-39 T 11-10-2018 VV93_v1c04190 18544608a2a0f799f6d246984c6319b6 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 182 2.3E-52 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VV93_v1c04190 18544608a2a0f799f6d246984c6319b6 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 3 185 24.422 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 VV93_v1c04810 7d82ce4a5807ebfc42b2da382b0f3f8a 420 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 42 405 5.6E-102 T 11-10-2018 IPR013397 CRISPR-associated protein Csy1 VV93_v1c04810 7d82ce4a5807ebfc42b2da382b0f3f8a 420 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 42 369 1.4E-51 T 11-10-2018 IPR013397 CRISPR-associated protein Csy1 VV93_v1c17070 7ff6f6ad7a06c73c95a80d9878fd011b 247 Pfam PF07070 SpoOM protein 2 215 1.4E-60 T 11-10-2018 IPR009776 Sporulation stage 0, protein M VV93_v1c02280 87bc579252fbcebf7141ba3e4eff4a8c 254 Pfam PF11932 Protein of unknown function (DUF3450) 12 249 2.0E-90 T 11-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VV93_v1c02280 87bc579252fbcebf7141ba3e4eff4a8c 254 PIRSF PIRSF028069 4 254 7.9E-94 T 11-10-2018 IPR016866 Uncharacterised conserved protein UCP028069 VV93_v1c37220 85e934abed1dcea59f2eb8bc3174305e 589 SUPERFAMILY SSF109604 397 568 3.14E-35 T 11-10-2018 VV93_v1c37220 85e934abed1dcea59f2eb8bc3174305e 589 Gene3D G3DSA:1.10.3210.10 382 582 3.3E-67 T 11-10-2018 VV93_v1c37220 85e934abed1dcea59f2eb8bc3174305e 589 SMART SM00471 401 538 1.4E-4 T 11-10-2018 IPR003607 HD/PDEase domain VV93_v1c37220 85e934abed1dcea59f2eb8bc3174305e 589 Pfam PF13487 HD domain 456 518 4.1E-13 T 11-10-2018 VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 SMART SM00729 23 247 2.9E-43 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 Pfam PF16199 Radical_SAM C-terminal domain 209 279 9.7E-18 T 11-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 300 8.6E-136 T 11-10-2018 IPR005911 Protein YhcC-like GO:0051536 VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 Pfam PF04055 Radical SAM superfamily 43 198 8.2E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 Gene3D G3DSA:3.80.30.20 41 279 4.6E-17 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe VV93_v1c05810 f4f3303416dfcbe2529df1de5e275e29 318 SUPERFAMILY SSF102114 13 268 2.22E-49 T 11-10-2018 VV93_v1c32090 fd485c1a3c9d56110538d535cce6cb17 366 Pfam PF13265 Protein of unknown function (DUF4056) 22 285 3.7E-122 T 11-10-2018 IPR025130 Protein of unknown function DUF4056 VV93_v1c14410 b3418bcb1d179a6c458d38f53ad90b74 159 Gene3D G3DSA:3.40.630.30 6 137 8.2E-33 T 11-10-2018 VV93_v1c14410 b3418bcb1d179a6c458d38f53ad90b74 159 Pfam PF00583 Acetyltransferase (GNAT) family 30 146 5.2E-18 T 11-10-2018 IPR000182 GNAT domain VV93_v1c14410 b3418bcb1d179a6c458d38f53ad90b74 159 SUPERFAMILY SSF55729 4 148 7.15E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 Gene3D G3DSA:3.90.1150.10 5 392 3.2E-159 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 Gene3D G3DSA:3.40.640.10 60 300 3.2E-159 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 SUPERFAMILY SSF53383 1 395 1.33E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 9.9E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 9.9E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 9.9E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 9.9E-38 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 VV93_v1c18630 842b8b8cccf33c5dda7702ad65bf5afb 396 Pfam PF00155 Aminotransferase class I and II 27 392 1.1E-82 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 VV93_v1c19670 ffbf98c3cae7c46da638f94c59843726 212 Pfam PF11726 Inovirus Gp2 33 210 4.4E-67 T 11-10-2018 VV93_v1c41980 c16e525664e2e08dd092ed0ceed074c1 281 Pfam PF00924 Mechanosensitive ion channel 57 184 4.7E-17 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 VV93_v1c41980 c16e525664e2e08dd092ed0ceed074c1 281 Gene3D G3DSA:2.30.30.60 112 168 2.6E-5 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily VV93_v1c41980 c16e525664e2e08dd092ed0ceed074c1 281 SUPERFAMILY SSF50182 96 169 8.5E-11 T 11-10-2018 IPR010920 LSM domain superfamily VV93_v1c37620 e2ed3938f8cdc676db3c9e07a14a70ab 165 Gene3D G3DSA:3.40.50.1110 1 165 2.5E-56 T 11-10-2018 IPR036514 SGNH hydrolase superfamily VV93_v1c37620 e2ed3938f8cdc676db3c9e07a14a70ab 165 SUPERFAMILY SSF52266 3 164 4.89E-43 T 11-10-2018 VV93_v1c37620 e2ed3938f8cdc676db3c9e07a14a70ab 165 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 3 148 1.6E-17 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain VV93_v1c17740 f55a2420b71b36c53acc6d8b875d98d3 58 Pfam PF04964 Flp/Fap pilin component 5 52 1.6E-12 T 11-10-2018 IPR007047 Flp/Fap pilin component VV93_v1c42110 01d6d6fb2feabe0a6ff43e09414ddd81 242 Gene3D G3DSA:3.40.190.10 103 201 9.4E-37 T 11-10-2018 VV93_v1c42110 01d6d6fb2feabe0a6ff43e09414ddd81 242 Gene3D G3DSA:3.40.190.10 28 239 9.4E-37 T 11-10-2018 VV93_v1c42110 01d6d6fb2feabe0a6ff43e09414ddd81 242 SMART SM00062 19 242 1.9E-5 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c42110 01d6d6fb2feabe0a6ff43e09414ddd81 242 SUPERFAMILY SSF53850 26 240 9.06E-39 T 11-10-2018 VV93_v1c42110 01d6d6fb2feabe0a6ff43e09414ddd81 242 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 240 1.7E-30 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c28340 72244da8503a65b921516cbfc73d6544 171 PIRSF PIRSF034445 1 160 7.4E-20 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 VV93_v1c28340 72244da8503a65b921516cbfc73d6544 171 Gene3D G3DSA:1.20.120.1490 37 155 1.1E-26 T 11-10-2018 VV93_v1c28340 72244da8503a65b921516cbfc73d6544 171 Pfam PF07813 LTXXQ motif family protein 40 150 1.2E-23 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 Gene3D G3DSA:3.30.470.10 10 127 6.2E-107 T 11-10-2018 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 SUPERFAMILY SSF56752 7 307 1.44E-103 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 1.5E-143 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 Gene3D G3DSA:3.20.10.10 138 289 6.2E-107 T 11-10-2018 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 Pfam PF01063 Amino-transferase class IV 36 268 5.6E-47 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 VV93_v1c29640 3b7605cc4922fbc9783371e85385e3e4 312 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 6 481 2.4E-241 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 Gene3D G3DSA:3.40.605.10 24 458 6.4E-141 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 SUPERFAMILY SSF53720 2 484 4.71E-144 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 Pfam PF00171 Aldehyde dehydrogenase family 13 477 1.0E-137 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 VV93_v1c39840 2e3d5910435d5005552ab9e18f247b51 497 Gene3D G3DSA:3.40.309.10 250 450 6.4E-141 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 VV93_v1c02250 4c161ea6f02eb1af29cae267865698b2 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 133 3.5E-32 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VV93_v1c02250 4c161ea6f02eb1af29cae267865698b2 135 Gene3D G3DSA:3.30.420.270 61 129 2.6E-10 T 11-10-2018 VV93_v1c12800 030af9c406bcc2a066800e664dc31e58 141 Pfam PF05232 Chlorhexidine efflux transporter 2 63 7.8E-22 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter VV93_v1c12800 030af9c406bcc2a066800e664dc31e58 141 Pfam PF05232 Chlorhexidine efflux transporter 69 131 8.0E-23 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 Pfam PF06165 Glycosyltransferase family 36 21 267 8.5E-84 T 11-10-2018 IPR010383 Glycosyl hydrolase 94 VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 Gene3D G3DSA:2.70.98.40 1 302 1.2E-113 T 11-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 SMART SM01068 1 63 9.9E-19 T 11-10-2018 IPR009342 Putative carbohydrate binding domain VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 SUPERFAMILY SSF48208 273 800 4.21E-110 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 296 728 1.6E-208 T 11-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 Gene3D G3DSA:2.60.420.10 723 801 9.2E-32 T 11-10-2018 VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 SUPERFAMILY SSF74650 1 269 1.44E-79 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 VV93_v1c24550 9dac352582b3029979687cb98ae96976 801 Gene3D G3DSA:1.50.10.10 311 722 1.5E-130 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 VV93_v1c23440 79c148b9521a5f22a70c63adbeaabaca 366 Pfam PF11814 Peptidase_C39 like family 157 359 1.1E-79 T 11-10-2018 IPR021770 Protein of unknown function DUF3335 VV93_v1c23440 79c148b9521a5f22a70c63adbeaabaca 366 SUPERFAMILY SSF55729 1 146 2.03E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c23440 79c148b9521a5f22a70c63adbeaabaca 366 Pfam PF00583 Acetyltransferase (GNAT) family 22 123 4.5E-17 T 11-10-2018 IPR000182 GNAT domain VV93_v1c23440 79c148b9521a5f22a70c63adbeaabaca 366 Gene3D G3DSA:3.40.630.30 1 149 8.2E-32 T 11-10-2018 VV93_v1c39050 89f11d846bde423382437835131f5fb4 461 Gene3D G3DSA:3.30.2290.10 4 222 4.8E-17 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal VV93_v1c39050 89f11d846bde423382437835131f5fb4 461 PIRSF PIRSF004919 1 461 1.5E-115 T 11-10-2018 IPR025502 TldD VV93_v1c39050 89f11d846bde423382437835131f5fb4 461 SUPERFAMILY SSF111283 7 459 1.26E-111 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 VV93_v1c39050 89f11d846bde423382437835131f5fb4 461 Pfam PF01523 Putative modulator of DNA gyrase 21 314 7.0E-62 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 VV93_v1c15940 ac4f8802b2e2fc3d1f280509098a4627 206 SUPERFAMILY SSF89155 3 193 2.62E-52 T 11-10-2018 IPR036411 TorD-like superfamily VV93_v1c15940 ac4f8802b2e2fc3d1f280509098a4627 206 Gene3D G3DSA:1.10.3480.10 4 194 1.7E-40 T 11-10-2018 VV93_v1c15940 ac4f8802b2e2fc3d1f280509098a4627 206 Pfam PF02613 Nitrate reductase delta subunit 42 156 4.4E-31 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone VV93_v1c09370 7a64a9d8d04bc5508b2c0936367a40c9 149 SUPERFAMILY SSF46785 5 135 2.05E-43 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c09370 7a64a9d8d04bc5508b2c0936367a40c9 149 Pfam PF01475 Ferric uptake regulator family 11 130 1.3E-46 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 VV93_v1c09370 7a64a9d8d04bc5508b2c0936367a40c9 149 Gene3D G3DSA:1.10.10.10 1 84 9.8E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c09370 7a64a9d8d04bc5508b2c0936367a40c9 149 Gene3D G3DSA:3.30.1490.190 85 141 1.2E-22 T 11-10-2018 VV93_v1c42740 8922e31d95468d14482df10cf00c78d7 93 Pfam PF13670 Peptidase propeptide and YPEB domain 8 90 1.3E-23 T 11-10-2018 IPR025711 PepSY domain VV93_v1c03980 416d89d89e97f8a1c2e0edde89217522 119 Pfam PF10973 Protein of unknown function (DUF2799) 29 112 2.1E-21 T 11-10-2018 IPR021242 Protein of unknown function DUF2799 VV93_v1c25710 af857501fbf1243ae1208a810c1b77e7 168 Pfam PF10263 SprT-like family 17 117 2.9E-18 T 11-10-2018 IPR006640 SprT-like VV93_v1c25710 af857501fbf1243ae1208a810c1b77e7 168 Hamap MF_00746 Protein SprT [sprT]. 10 163 43.253 T 11-10-2018 IPR023483 Uncharacterised protein family SprT VV93_v1c25710 af857501fbf1243ae1208a810c1b77e7 168 SMART SM00731 14 163 8.2E-57 T 11-10-2018 IPR006640 SprT-like VV93_v1c25710 af857501fbf1243ae1208a810c1b77e7 168 Pfam PF17283 SprT-like zinc ribbon domain 123 163 3.7E-10 T 11-10-2018 IPR035240 SprT-like, zinc ribbon domain VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 67 425 2.6E-86 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 Gene3D G3DSA:3.90.76.10 57 165 2.9E-124 T 11-10-2018 VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 SUPERFAMILY SSF53850 26 516 5.43E-129 T 11-10-2018 VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 Gene3D G3DSA:3.40.190.10 32 278 2.9E-124 T 11-10-2018 VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 72 93 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 Gene3D G3DSA:3.10.105.10 279 494 2.9E-124 T 11-10-2018 VV93_v1c00390 83a3a1d31c836b82dfc757a173e0c2a5 518 PIRSF PIRSF002741 20 502 1.1E-94 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c00720 21f6a5da858f80832bbb9f2d840f016e 243 Gene3D G3DSA:3.40.50.10090 32 161 6.4E-71 T 11-10-2018 VV93_v1c00720 21f6a5da858f80832bbb9f2d840f016e 243 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 228 7.8E-36 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c00720 21f6a5da858f80832bbb9f2d840f016e 243 Gene3D G3DSA:3.40.50.10090 4 240 6.4E-71 T 11-10-2018 VV93_v1c00720 21f6a5da858f80832bbb9f2d840f016e 243 SUPERFAMILY SSF69618 1 241 1.24E-55 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 VV93_v1c04600 e7d4f5e2a9523f4f1cb1c04852dac8fd 601 Gene3D G3DSA:3.40.50.12780 2 313 1.0E-53 T 11-10-2018 VV93_v1c04600 e7d4f5e2a9523f4f1cb1c04852dac8fd 601 SUPERFAMILY SSF56801 7 596 2.09E-113 T 11-10-2018 VV93_v1c04600 e7d4f5e2a9523f4f1cb1c04852dac8fd 601 Gene3D G3DSA:3.40.50.12780 317 459 7.6E-34 T 11-10-2018 VV93_v1c04600 e7d4f5e2a9523f4f1cb1c04852dac8fd 601 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c04600 e7d4f5e2a9523f4f1cb1c04852dac8fd 601 Pfam PF00501 AMP-binding enzyme 14 466 8.7E-99 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c30620 7a1c5517b7bf6745d473eaff9d206bd4 283 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 71 201 1.3E-43 T 11-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 VV93_v1c23940 ac5cae35a8edd72503f87125950894c5 782 SUPERFAMILY SSF141371 466 548 1.75E-5 T 11-10-2018 VV93_v1c23940 ac5cae35a8edd72503f87125950894c5 782 Pfam PF07238 PilZ domain 145 233 1.9E-8 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c23940 ac5cae35a8edd72503f87125950894c5 782 Pfam PF07238 PilZ domain 470 557 5.6E-10 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c23940 ac5cae35a8edd72503f87125950894c5 782 SUPERFAMILY SSF141371 142 200 8.44E-5 T 11-10-2018 VV93_v1c23940 ac5cae35a8edd72503f87125950894c5 782 Gene3D G3DSA:2.40.10.220 466 588 4.8E-6 T 11-10-2018 VV93_v1c12990 2a382ac0e605de57faacc62f5f76efe9 295 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 65 4.8E-15 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VV93_v1c12990 2a382ac0e605de57faacc62f5f76efe9 295 SUPERFAMILY SSF161098 89 276 2.62E-22 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12990 2a382ac0e605de57faacc62f5f76efe9 295 Gene3D G3DSA:1.10.3720.10 84 292 4.0E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c12990 2a382ac0e605de57faacc62f5f76efe9 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 293 1.0E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 Hamap MF_00528 Septum formation protein Maf [maf]. 5 192 29.856 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 185 2.6E-54 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 Pfam PF02545 Maf-like protein 5 187 8.0E-47 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 SUPERFAMILY SSF52972 2 186 8.5E-58 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 PIRSF PIRSF006305 1 192 1.9E-45 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 VV93_v1c11860 8860b021f2ef508b0f3f724db03f2edc 194 Gene3D G3DSA:3.90.950.10 5 194 2.7E-61 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 Pfam PF01228 Glycine radical 628 739 2.0E-43 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 PIRSF PIRSF000379 5 758 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 Pfam PF02901 Pyruvate formate lyase-like 21 612 8.4E-204 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 ProSitePatterns PS00850 Glycine radical domain signature. 728 736 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 Gene3D G3DSA:3.20.70.20 1 758 0.0 T 11-10-2018 VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 SUPERFAMILY SSF51998 4 757 8.01E-287 T 11-10-2018 VV93_v1c20520 7a25c8ad2a13e1e256b7aaf7b6f8d784 758 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 8 758 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 VV93_v1c22830 875b8dc74291a6dc043f4e478085b5d4 99 Pfam PF11743 Protein of unknown function (DUF3301) 6 96 1.7E-27 T 11-10-2018 IPR021732 Protein of unknown function DUF3301 VV93_v1c26230 bb01868a701748ab3086619c775d85cd 143 Pfam PF10980 Protein of unknown function (DUF2787) 18 141 5.7E-39 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c26230 bb01868a701748ab3086619c775d85cd 143 Gene3D G3DSA:3.10.450.430 2 143 1.8E-48 T 11-10-2018 VV93_v1c43410 1e0e237064c5eb957809cf61d9a3d828 150 Gene3D G3DSA:3.30.420.130 1 108 5.3E-13 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily VV93_v1c43410 1e0e237064c5eb957809cf61d9a3d828 150 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 8 98 2.1E-13 T 11-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis VV93_v1c43410 1e0e237064c5eb957809cf61d9a3d828 150 SUPERFAMILY SSF53146 2 117 1.7E-19 T 11-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily VV93_v1c30120 dea86cc869dd53624ae0aec222f89977 656 Pfam PF11826 Protein of unknown function (DUF3346) 290 514 2.8E-144 T 11-10-2018 IPR021781 Protein of unknown function DUF3346 VV93_v1c10970 599c156a2ad94c2e351ce4b0dded68eb 167 Pfam PF11993 Ribosomal S4P (gammaproteobacterial) 1 161 1.2E-62 T 11-10-2018 IPR021879 Ribosomal S4P (gammaproteobacterial) VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 327 428 7.5E-17 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 Gene3D G3DSA:3.50.50.60 2 336 1.1E-149 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 303 5.1E-55 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 SUPERFAMILY SSF55424 319 438 1.37E-31 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 Gene3D G3DSA:3.50.50.60 111 436 1.1E-149 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 SUPERFAMILY SSF51905 1 312 9.15E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 5.8E-22 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.8E-22 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 5.8E-22 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 5.8E-22 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 5.8E-22 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.1E-16 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 4.1E-16 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 4.1E-16 T 11-10-2018 VV93_v1c09470 82f15fc8029fe3109d4ac1951a7c27a0 440 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 4.1E-16 T 11-10-2018 VV93_v1c07710 4b7be5ef9c91e72e602088976be2e2ba 299 SUPERFAMILY SSF53807 13 294 4.51E-50 T 11-10-2018 VV93_v1c07710 4b7be5ef9c91e72e602088976be2e2ba 299 Gene3D G3DSA:3.40.50.1980 21 180 1.4E-18 T 11-10-2018 VV93_v1c07710 4b7be5ef9c91e72e602088976be2e2ba 299 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 291 3.7E-20 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 VV93_v1c35590 444719266c624d45aeebf924d92e8841 179 SUPERFAMILY SSF48317 23 157 2.22E-28 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VV93_v1c35590 444719266c624d45aeebf924d92e8841 179 Pfam PF01569 PAP2 superfamily 75 158 3.6E-15 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c35590 444719266c624d45aeebf924d92e8841 179 Gene3D G3DSA:1.20.144.10 82 164 4.3E-17 T 11-10-2018 VV93_v1c35590 444719266c624d45aeebf924d92e8841 179 SMART SM00014 53 153 7.0E-5 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VV93_v1c19990 e12574c8e272da4464d6317780be047b 293 Gene3D G3DSA:3.20.20.410 2 273 7.0E-42 T 11-10-2018 IPR036520 UPF0759 superfamily VV93_v1c19990 e12574c8e272da4464d6317780be047b 293 Pfam PF01904 Protein of unknown function DUF72 28 267 1.8E-53 T 11-10-2018 IPR002763 Protein of unknown function DUF72 VV93_v1c19990 e12574c8e272da4464d6317780be047b 293 SUPERFAMILY SSF117396 9 271 6.02E-72 T 11-10-2018 IPR036520 UPF0759 superfamily VV93_v1c32560 643837010ca61ca848902329aa5799cc 172 Pfam PF11286 Protein of unknown function (DUF3087) 2 169 2.2E-58 T 11-10-2018 IPR021438 Protein of unknown function DUF3087 VV93_v1c16750 38d63cd7c1121ba300ce810431433650 105 SUPERFAMILY SSF50118 3 105 1.05E-30 T 11-10-2018 VV93_v1c16750 38d63cd7c1121ba300ce810431433650 105 Gene3D G3DSA:2.30.30.110 1 105 9.6E-40 T 11-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor VV93_v1c16750 38d63cd7c1121ba300ce810431433650 105 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 18 104 2.0E-36 T 11-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 VV93_v1c16750 38d63cd7c1121ba300ce810431433650 105 Pfam PF01845 CcdB protein 3 104 1.1E-34 T 11-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 VV93_v1c29940 856f3f4b8cb8cd9703297d2688936a1d 580 Pfam PF01935 Domain of unknown function DUF87 148 407 1.7E-33 T 11-10-2018 IPR002789 Helicase HerA, central domain VV93_v1c29940 856f3f4b8cb8cd9703297d2688936a1d 580 SUPERFAMILY SSF52540 147 548 7.75E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c29940 856f3f4b8cb8cd9703297d2688936a1d 580 Gene3D G3DSA:3.40.50.300 360 553 2.2E-46 T 11-10-2018 VV93_v1c29940 856f3f4b8cb8cd9703297d2688936a1d 580 Gene3D G3DSA:3.40.50.300 133 266 6.6E-16 T 11-10-2018 VV93_v1c11800 93009256848c7c83f62d0fa4d20cc269 702 Pfam PF05170 AsmA family 1 593 4.3E-123 T 11-10-2018 IPR007844 AsmA VV93_v1c14750 834068af3ea2887d62c23d33b1a08605 388 Pfam PF12698 ABC-2 family transporter protein 15 369 1.1E-42 T 11-10-2018 VV93_v1c14750 834068af3ea2887d62c23d33b1a08605 388 Gene3D G3DSA:3.40.1710.10 39 135 1.5E-5 T 11-10-2018 VV93_v1c00930 7105e717e64be2a119483c737fee1cfb 337 Pfam PF01757 Acyltransferase family 7 327 2.5E-37 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 Gene3D G3DSA:1.10.10.60 136 248 1.9E-30 T 11-10-2018 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 Pfam PF12833 Helix-turn-helix domain 164 241 8.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 191 236 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 SMART SM00342 158 240 1.7E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 SUPERFAMILY SSF46689 194 244 1.34E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 224 240 6.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c36560 e9e45ba9451906dd313232b6f5a70fed 249 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 209 224 6.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 VV93_v1c15130 a9e0863a58ac53cdfc4aa7a5ff349c8f 161 Pfam PF14539 Domain of unknown function (DUF4442) 18 127 6.1E-10 T 11-10-2018 IPR027961 Protein of unknown function DUF4442 VV93_v1c15130 a9e0863a58ac53cdfc4aa7a5ff349c8f 161 Gene3D G3DSA:3.10.129.10 4 155 4.3E-26 T 11-10-2018 VV93_v1c15130 a9e0863a58ac53cdfc4aa7a5ff349c8f 161 SUPERFAMILY SSF54637 12 156 1.49E-15 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c04240 de735ea7ce959ad09184ea8a1e11025a 262 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 7 260 9.6E-98 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria VV93_v1c04240 de735ea7ce959ad09184ea8a1e11025a 262 Pfam PF02405 Permease MlaE 47 258 3.3E-75 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 VV93_v1c11470 963da4144edc656f3d4ee74a68f15acf 255 SUPERFAMILY SSF81301 35 80 1.24E-7 T 11-10-2018 VV93_v1c11470 963da4144edc656f3d4ee74a68f15acf 255 Gene3D G3DSA:3.30.460.10 6 104 3.1E-8 T 11-10-2018 VV93_v1c11470 963da4144edc656f3d4ee74a68f15acf 255 Pfam PF01909 Nucleotidyltransferase domain 36 72 2.3E-5 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 VV93_v1c21480 d56be8e6d31fd9adeeef7ea1ceac767d 438 Gene3D G3DSA:2.40.160.60 26 438 7.9E-123 T 11-10-2018 VV93_v1c21480 d56be8e6d31fd9adeeef7ea1ceac767d 438 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 20 438 5.5E-130 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c21480 d56be8e6d31fd9adeeef7ea1ceac767d 438 SUPERFAMILY SSF56935 26 438 2.32E-101 T 11-10-2018 VV93_v1c21970 8e744c1639e9aab96e7f247c637b41a5 127 Pfam PF11143 Protein of unknown function (DUF2919) 1 116 1.5E-38 T 11-10-2018 IPR021318 Protein of unknown function DUF2919 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 SUPERFAMILY SSF53067 208 447 4.63E-34 T 11-10-2018 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 Pfam PF00012 Hsp70 protein 336 440 9.3E-5 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 Pfam PF00012 Hsp70 protein 129 259 6.7E-12 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 Gene3D G3DSA:3.90.640.10 335 378 3.9E-13 T 11-10-2018 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 Gene3D G3DSA:3.30.420.40 379 433 3.9E-13 T 11-10-2018 VV93_v1c35350 98a0a82d30dc70fcda92df914371c242 450 SUPERFAMILY SSF53067 1 205 3.56E-26 T 11-10-2018 VV93_v1c31410 1f20b7995322ed9a273efed18ede9849 533 Pfam PF00722 Glycosyl hydrolases family 16 95 274 3.0E-23 T 11-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 VV93_v1c31410 1f20b7995322ed9a273efed18ede9849 533 SUPERFAMILY SSF49899 50 337 2.11E-80 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VV93_v1c31410 1f20b7995322ed9a273efed18ede9849 533 Gene3D G3DSA:2.60.120.200 51 344 3.4E-90 T 11-10-2018 VV93_v1c41650 a05f9718ffb7d576d64bfab604c55f23 417 PIRSF PIRSF006060 1 415 1.5E-58 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c41650 a05f9718ffb7d576d64bfab604c55f23 417 Gene3D G3DSA:1.20.1740.10 2 416 2.6E-59 T 11-10-2018 VV93_v1c41650 a05f9718ffb7d576d64bfab604c55f23 417 Pfam PF13520 Amino acid permease 12 405 2.3E-33 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c26360 d8990f4122fe7fb2428cac2f3bc46d7d 390 Pfam PF05987 Bacterial protein of unknown function (DUF898) 8 382 6.1E-96 T 11-10-2018 IPR010295 Protein of unknown function DUF898 VV93_v1c18190 75843a70b64abd0f5f3206aaf8c59120 235 SUPERFAMILY SSF53850 16 230 2.72E-28 T 11-10-2018 VV93_v1c18190 75843a70b64abd0f5f3206aaf8c59120 235 Gene3D G3DSA:3.40.190.10 96 193 1.0E-15 T 11-10-2018 VV93_v1c18190 75843a70b64abd0f5f3206aaf8c59120 235 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 229 1.7E-12 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c18190 75843a70b64abd0f5f3206aaf8c59120 235 Gene3D G3DSA:3.40.190.10 32 227 1.0E-15 T 11-10-2018 VV93_v1c17450 76bfacdca63d1566b0c05eee42674262 276 SUPERFAMILY SSF109604 6 229 1.76E-56 T 11-10-2018 VV93_v1c17450 76bfacdca63d1566b0c05eee42674262 276 Pfam PF08668 HDOD domain 13 204 1.8E-55 T 11-10-2018 IPR013976 Metal-dependent hydrolase HDOD VV93_v1c17450 76bfacdca63d1566b0c05eee42674262 276 Gene3D G3DSA:1.10.3210.10 2 274 3.5E-69 T 11-10-2018 VV93_v1c10190 8a84db157dc92efbc23811c23ccb95c5 453 PIRSF PIRSF006066 1 267 1.1E-92 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c10190 8a84db157dc92efbc23811c23ccb95c5 453 PIRSF PIRSF006066 272 447 5.5E-50 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c10190 8a84db157dc92efbc23811c23ccb95c5 453 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 260 1.2E-84 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 VV93_v1c10190 8a84db157dc92efbc23811c23ccb95c5 453 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 437 2.2E-116 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VV93_v1c44430 7250caaea21acc8a5422b2e1b6126fca 599 SUPERFAMILY SSF63829 295 485 1.44E-9 T 11-10-2018 VV93_v1c41230 f4c3673d11641df10ccba7a6f652e327 353 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 8 352 4.5E-149 T 11-10-2018 IPR019936 Mutatrotase, YjhT-like VV93_v1c41230 f4c3673d11641df10ccba7a6f652e327 353 SUPERFAMILY SSF117281 28 352 5.75E-19 T 11-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 VV93_v1c41230 f4c3673d11641df10ccba7a6f652e327 353 Gene3D G3DSA:2.120.10.80 3 353 1.7E-6 T 11-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 VV93_v1c00870 1b865a5cf1f302fc4542751c09856cb8 205 PIRSF PIRSF006324 1 205 4.9E-57 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c00870 1b865a5cf1f302fc4542751c09856cb8 205 Pfam PF01810 LysE type translocator 15 202 9.3E-37 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c30730 2e795c648dfa0488c617e61082635b0a 427 SUPERFAMILY SSF103647 173 232 5.49E-6 T 11-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 VV93_v1c43620 e228200b501eb5284a34dc219c8fcb72 278 Gene3D G3DSA:3.40.50.1820 1 264 7.8E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c43620 e228200b501eb5284a34dc219c8fcb72 278 SUPERFAMILY SSF53474 4 261 2.88E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c43620 e228200b501eb5284a34dc219c8fcb72 278 Pfam PF12697 Alpha/beta hydrolase family 42 258 1.0E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 VV93_v1c31810 036ed43831be6ca00384ba6c2e1b111b 467 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 13 342 1.1E-76 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 VV93_v1c31810 036ed43831be6ca00384ba6c2e1b111b 467 SUPERFAMILY SSF52794 373 466 2.09E-30 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c31810 036ed43831be6ca00384ba6c2e1b111b 467 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 376 466 9.8E-17 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c31810 036ed43831be6ca00384ba6c2e1b111b 467 Gene3D G3DSA:3.40.50.2300 367 467 1.6E-35 T 11-10-2018 VV93_v1c31810 036ed43831be6ca00384ba6c2e1b111b 467 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 375 459 1.9E-32 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 VV93_v1c21540 c58156ac8ae95e99f7ae72040cd89fd2 161 SUPERFAMILY SSF82093 30 142 1.57E-37 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 VV93_v1c21540 c58156ac8ae95e99f7ae72040cd89fd2 161 Pfam PF03100 CcmE 4 136 2.0E-44 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VV93_v1c21540 c58156ac8ae95e99f7ae72040cd89fd2 161 Gene3D G3DSA:2.40.50.140 30 142 7.0E-40 T 11-10-2018 VV93_v1c21540 c58156ac8ae95e99f7ae72040cd89fd2 161 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 146 31.918 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 Gene3D G3DSA:1.10.3080.10 29 467 2.7E-142 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 SUPERFAMILY SSF81340 26 451 1.01E-113 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 1 467 51.091 T 11-10-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 PRINTS PR00762 Chloride channel signature 181 200 3.2E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 PRINTS PR00762 Chloride channel signature 385 401 3.2E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 PRINTS PR00762 Chloride channel signature 403 422 3.2E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 PRINTS PR00762 Chloride channel signature 350 370 3.2E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 PRINTS PR00762 Chloride channel signature 100 117 3.2E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c40290 c91c7269a182ee401dfd4581ace6523d 467 Pfam PF00654 Voltage gated chloride channel 88 435 1.9E-94 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 VV93_v1c37450 fe6496dc8c28ba1428c09747af57a435 415 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 14 414 1.3E-126 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_v1c37450 fe6496dc8c28ba1428c09747af57a435 415 SUPERFAMILY SSF56935 22 414 3.89E-91 T 11-10-2018 VV93_v1c37450 fe6496dc8c28ba1428c09747af57a435 415 Gene3D G3DSA:2.40.160.60 22 415 3.8E-125 T 11-10-2018 VV93_v1c02360 cae1950efdab8b3a03e18feba91290d6 144 PIRSF PIRSF029598 6 138 1.5E-40 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 VV93_v1c02360 cae1950efdab8b3a03e18feba91290d6 144 Pfam PF06146 Phosphate-starvation-inducible E 54 120 1.5E-14 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like VV93_v1c22490 d1ae86ffddf8701ab3982935384d7d37 416 TIGRFAM TIGR03503 TIGR03503: TIGR03503 family protein 24 399 1.7E-135 T 11-10-2018 IPR020010 Conserved hypothetical protein CHP03503 VV93_v1c38900 cfb64693368aba4dbba6e6da616a4351 453 Pfam PF13379 NMT1-like family 27 307 2.4E-108 T 11-10-2018 VV93_v1c38900 cfb64693368aba4dbba6e6da616a4351 453 SUPERFAMILY SSF53850 33 338 5.79E-21 T 11-10-2018 VV93_v1c38900 cfb64693368aba4dbba6e6da616a4351 453 Gene3D G3DSA:3.40.190.10 33 431 1.7E-142 T 11-10-2018 VV93_v1c38900 cfb64693368aba4dbba6e6da616a4351 453 Gene3D G3DSA:3.40.190.10 118 436 1.7E-142 T 11-10-2018 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 441 7.4E-152 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 Pfam PF01235 Sodium:alanine symporter family 54 448 3.4E-138 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 412 432 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 184 202 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 212 231 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 92 114 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 353 375 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 PRINTS PR00175 Sodium/alanine symporter signature 307 325 4.3E-52 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c14700 8e8641e176b00c428e220dbfe0060f79 458 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 VV93_v1c12850 c66d651d862d282ea9fb60caf15acea1 266 Pfam PF03649 Uncharacterised protein family (UPF0014) 12 251 7.4E-72 T 11-10-2018 IPR005226 UPF0014 family VV93_v1c34120 3bf1fa04e8893548451249da40f94979 167 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 8 161 8.9E-63 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like VV93_v1c34120 3bf1fa04e8893548451249da40f94979 167 Gene3D G3DSA:3.40.1570.10 1 167 2.3E-60 T 11-10-2018 VV93_v1c34120 3bf1fa04e8893548451249da40f94979 167 SUPERFAMILY SSF144064 1 164 2.62E-56 T 11-10-2018 VV93_v1c34120 3bf1fa04e8893548451249da40f94979 167 Pfam PF06228 Haem utilisation ChuX/HutX 24 160 1.3E-32 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like VV93_v1c34120 3bf1fa04e8893548451249da40f94979 167 PIRSF PIRSF030840 1 167 3.5E-64 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like VV93_v1c22790 c52a8c2edcdaaebc4ad0736d887c439f 127 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 127 32.09 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 VV93_v1c22790 c52a8c2edcdaaebc4ad0736d887c439f 127 Pfam PF11944 Protein of unknown function (DUF3461) 1 126 5.7E-58 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 VV93_v1c22790 c52a8c2edcdaaebc4ad0736d887c439f 127 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 126 5.0E-68 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 SUPERFAMILY SSF50104 4 101 8.6E-34 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 Pfam PF00467 KOW motif 8 37 7.8E-6 T 11-10-2018 IPR005824 KOW VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 1.2E-39 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 Gene3D G3DSA:2.30.30.30 2 104 1.1E-39 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.924 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 SMART SM00739 4 31 3.4E-4 T 11-10-2018 IPR005824 KOW VV93_v1c03570 794c40a42c62236816d2d971cb084c39 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 102 3.0E-22 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c16290 77e61cf974898ea0da69bff59979f120 56 Pfam PF01527 Transposase 5 44 2.7E-8 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 VV93_v1c16290 77e61cf974898ea0da69bff59979f120 56 SUPERFAMILY SSF46689 7 45 2.69E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 VV93_v1c16290 77e61cf974898ea0da69bff59979f120 56 Gene3D G3DSA:1.10.10.60 10 52 1.1E-5 T 11-10-2018 VV93_v1c42460 14fc8450b7ec31f755e7dd0db269548b 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 2.5E-145 T 11-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 VV93_v1c43380 75c39bccd5754af3eb066a731e759f71 151 SUPERFAMILY SSF55729 10 146 3.43E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c43380 75c39bccd5754af3eb066a731e759f71 151 Pfam PF00583 Acetyltransferase (GNAT) family 25 129 3.8E-15 T 11-10-2018 IPR000182 GNAT domain VV93_v1c43380 75c39bccd5754af3eb066a731e759f71 151 Gene3D G3DSA:3.40.630.30 2 151 9.6E-44 T 11-10-2018 VV93_v1c09060 4136679b8c81013c7f5ae13e2717679a 246 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 7 246 27.605 T 11-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 VV93_v1c09060 4136679b8c81013c7f5ae13e2717679a 246 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 13 229 7.2E-42 T 11-10-2018 VV93_v1c23040 922d5beb07596442bbece8fb3c1a53cd 198 PIRSF PIRSF006102 1 198 1.2E-65 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c23040 922d5beb07596442bbece8fb3c1a53cd 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.873 T 11-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VV93_v1c23040 922d5beb07596442bbece8fb3c1a53cd 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 2.3E-59 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 VV93_v1c23040 922d5beb07596442bbece8fb3c1a53cd 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 2.0E-107 T 11-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 VV93_v1c44440 aa6113a4a6ce532b36252bc17f8e6952 231 PIRSF PIRSF028137 1 231 3.4E-110 T 11-10-2018 IPR016870 Uncharacterised conserved protein UCP028137, membrane VV93_v1c35320 b92d20cf21e50a8765cea14dc221d737 360 Pfam PF07995 Glucose / Sorbosone dehydrogenase 35 355 2.0E-111 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase VV93_v1c35320 b92d20cf21e50a8765cea14dc221d737 360 Gene3D G3DSA:2.120.10.30 19 360 1.6E-98 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like VV93_v1c35320 b92d20cf21e50a8765cea14dc221d737 360 SUPERFAMILY SSF50952 21 354 4.58E-40 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 VV93_v1c42180 3a6df68927b7ccc9b0dd2fd3d377fac3 356 SUPERFAMILY SSF51569 12 346 5.97E-116 T 11-10-2018 VV93_v1c42180 3a6df68927b7ccc9b0dd2fd3d377fac3 356 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 16 345 7.0E-133 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c42180 3a6df68927b7ccc9b0dd2fd3d377fac3 356 PIRSF PIRSF001361 4 351 5.1E-149 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 VV93_v1c42180 3a6df68927b7ccc9b0dd2fd3d377fac3 356 Pfam PF00793 DAHP synthetase I family 44 337 2.7E-85 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 VV93_v1c42180 3a6df68927b7ccc9b0dd2fd3d377fac3 356 Gene3D G3DSA:3.20.20.70 8 347 1.8E-135 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c01490 393d183011b2e0d586d331ed73f5b6b7 306 Pfam PF13737 Transposase DDE domain 19 129 6.9E-45 T 11-10-2018 IPR025668 Transposase DDE domain VV93_v1c35050 393d183011b2e0d586d331ed73f5b6b7 306 Pfam PF13737 Transposase DDE domain 19 129 6.9E-45 T 11-10-2018 IPR025668 Transposase DDE domain VV93_v1c02420 7a60d46cd1a0badec9f720908b0b337e 330 Pfam PF11168 Protein of unknown function (DUF2955) 9 148 4.0E-30 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 SUPERFAMILY SSF53822 29 371 9.42E-84 T 11-10-2018 IPR028082 Periplasmic binding protein-like I VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 Gene3D G3DSA:3.40.50.2300 145 369 4.8E-87 T 11-10-2018 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 Gene3D G3DSA:3.40.50.2300 32 356 4.8E-87 T 11-10-2018 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 Pfam PF13458 Periplasmic binding protein 29 366 8.0E-72 T 11-10-2018 IPR028081 Leucine-binding protein domain VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 8.7E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 89 8.7E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 8.7E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VV93_v1c43360 f7849b8b3a4e0c8cb7305b7a3147c1c1 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 256 274 8.7E-13 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 VV93_v1c44170 d2262a6d107f5f4826ee66f02854cfb5 258 Pfam PF03609 PTS system sorbose-specific iic component 5 236 3.2E-72 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 68 2.5E-34 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.109 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 SUPERFAMILY SSF118001 1 70 1.44E-28 T 11-10-2018 IPR036685 YehU-like superfamily VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 Gene3D G3DSA:1.10.10.610 1 70 4.2E-30 T 11-10-2018 IPR036685 YehU-like superfamily VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 PIRSF PIRSF006169 1 70 2.6E-36 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 VV93_v1c27760 63a4f6cd497fede8795dcb0262ee5949 70 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 53 4.0E-24 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 VV93_v1c00820 786064adf002ec9b6ae00caa0864cf5c 201 SMART SM01144 2 193 7.2E-57 T 11-10-2018 IPR005636 DTW VV93_v1c00820 786064adf002ec9b6ae00caa0864cf5c 201 Pfam PF03942 DTW domain 5 183 1.7E-42 T 11-10-2018 IPR005636 DTW VV93_v1c09090 57ee087366451818aeb5461e8e4522c7 449 Gene3D G3DSA:2.40.160.10 51 448 2.1E-14 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c42790 d4478d2348335c1f3de82969696e6a28 352 SUPERFAMILY SSF160935 11 350 3.79E-54 T 11-10-2018 VV93_v1c42790 d4478d2348335c1f3de82969696e6a28 352 Pfam PF06742 Protein of unknown function (DUF1214) 251 334 1.3E-11 T 11-10-2018 IPR010621 Domain of unknown function DUF1214 VV93_v1c42790 d4478d2348335c1f3de82969696e6a28 352 Gene3D G3DSA:2.60.120.1600 245 352 2.2E-16 T 11-10-2018 VV93_v1c42790 d4478d2348335c1f3de82969696e6a28 352 Pfam PF06863 Protein of unknown function (DUF1254) 65 174 1.6E-11 T 11-10-2018 IPR010679 Domain of unknown function DUF1254 VV93_v1c31800 d3d28773c2eff7aa58dabd7aea0ef5ed 299 SUPERFAMILY SSF103481 42 132 4.84E-6 T 11-10-2018 VV93_v1c31800 d3d28773c2eff7aa58dabd7aea0ef5ed 299 SUPERFAMILY SSF103481 178 283 1.57E-8 T 11-10-2018 VV93_v1c31800 d3d28773c2eff7aa58dabd7aea0ef5ed 299 Pfam PF00892 EamA-like transporter family 7 131 6.5E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c31800 d3d28773c2eff7aa58dabd7aea0ef5ed 299 Pfam PF00892 EamA-like transporter family 141 280 1.9E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c20970 dcd8ad66a036a0c706cb9d4452e0a65a 211 Gene3D G3DSA:1.10.357.20 30 206 7.8E-55 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain VV93_v1c20970 dcd8ad66a036a0c706cb9d4452e0a65a 211 SUPERFAMILY SSF161093 36 205 1.96E-48 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 VV93_v1c20970 dcd8ad66a036a0c706cb9d4452e0a65a 211 Pfam PF01769 Divalent cation transporter 79 198 8.7E-28 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 VV93_v1c22840 0a343e9fb332e55e3e30be65e6c4d794 167 SUPERFAMILY SSF55729 2 141 1.02E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c22840 0a343e9fb332e55e3e30be65e6c4d794 167 Gene3D G3DSA:3.40.630.30 1 151 2.5E-21 T 11-10-2018 VV93_v1c22840 0a343e9fb332e55e3e30be65e6c4d794 167 Pfam PF13302 Acetyltransferase (GNAT) domain 34 138 2.9E-17 T 11-10-2018 IPR000182 GNAT domain VV93_v1c36360 73976b974b64d1baef1e134f89f23c64 365 Pfam PF08308 PEGA domain 296 360 9.4E-24 T 11-10-2018 IPR013229 PEGA VV93_v1c19510 f8f1c64fff8cd83449079b9477e28d74 484 Pfam PF02447 GntP family permease 5 446 3.3E-101 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 VV93_v1c27490 68f28a7c554211fa67ad1a6200cd7aa8 208 Gene3D G3DSA:1.10.10.10 2 84 6.9E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c27490 68f28a7c554211fa67ad1a6200cd7aa8 208 SUPERFAMILY SSF46785 6 183 1.44E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c27490 68f28a7c554211fa67ad1a6200cd7aa8 208 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 46 2.6E-6 T 11-10-2018 VV93_v1c33100 dab2ceca0fe38501b7cf3d701a5db087 451 Pfam PF00990 Diguanylate cyclase, GGDEF domain 305 451 3.1E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33100 dab2ceca0fe38501b7cf3d701a5db087 451 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 303 451 3.7E-37 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33100 dab2ceca0fe38501b7cf3d701a5db087 451 Gene3D G3DSA:3.30.70.270 289 451 1.5E-41 T 11-10-2018 VV93_v1c33100 dab2ceca0fe38501b7cf3d701a5db087 451 SMART SM00267 292 450 5.7E-39 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33100 dab2ceca0fe38501b7cf3d701a5db087 451 SUPERFAMILY SSF55073 308 451 4.16E-35 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c41050 f4c70cb8e9a6f5d71ea7bfe242f601cf 173 Pfam PF00588 SpoU rRNA Methylase family 7 140 5.8E-20 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 VV93_v1c41050 f4c70cb8e9a6f5d71ea7bfe242f601cf 173 Gene3D G3DSA:3.40.1280.10 7 152 3.8E-20 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VV93_v1c41050 f4c70cb8e9a6f5d71ea7bfe242f601cf 173 SUPERFAMILY SSF75217 5 145 1.05E-27 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases VV93_v1c41990 f76a7ed88948a47e21c707c12331ae98 155 Pfam PF10517 Electron transfer DM13 59 154 1.9E-18 T 11-10-2018 IPR019545 DM13 domain VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 Pfam PF13416 Bacterial extracellular solute-binding protein 47 319 7.0E-44 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 67 85 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 354 373 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 168 187 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 148 167 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 296 317 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 33 51 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 230 249 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 PRINTS PR00181 Maltose binding protein signature 127 146 1.7E-79 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 Gene3D G3DSA:3.40.190.10 135 385 1.7E-134 T 11-10-2018 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 SUPERFAMILY SSF53850 25 392 1.58E-89 T 11-10-2018 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 Gene3D G3DSA:3.40.190.10 45 354 1.7E-134 T 11-10-2018 VV93_v1c33840 7f28260966bd2d8eee25f1e7c3bb12d6 393 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 130 147 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 VV93_v1c44010 334bb05f7c8d0b9312b2023bac7a1bfd 404 Pfam PF12704 MacB-like periplasmic core domain 19 238 1.4E-22 T 11-10-2018 IPR025857 MacB-like periplasmic core domain VV93_v1c44010 334bb05f7c8d0b9312b2023bac7a1bfd 404 Pfam PF02687 FtsX-like permease family 305 396 2.1E-13 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 PRINTS PR00811 Bacterial general secretion pathway protein D signature 178 188 1.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 PRINTS PR00811 Bacterial general secretion pathway protein D signature 388 406 1.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 PRINTS PR00811 Bacterial general secretion pathway protein D signature 254 278 1.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 PRINTS PR00811 Bacterial general secretion pathway protein D signature 411 425 1.2E-11 T 11-10-2018 IPR001775 GspD/PilQ family VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 Pfam PF00263 Bacterial type II and III secretion system protein 260 422 1.0E-39 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 VV93_v1c23770 06b35d47d40c85c39dafda2e1f7fa16b 488 Pfam PF13629 Pilus formation protein N terminal region 26 95 7.9E-19 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal VV93_v1c20380 ec27d0ff4ad7b20544e5469268237d60 316 Gene3D G3DSA:2.40.160.10 20 316 1.7E-28 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c20380 ec27d0ff4ad7b20544e5469268237d60 316 Pfam PF13609 Gram-negative porin 7 304 7.1E-25 T 11-10-2018 VV93_v1c20380 ec27d0ff4ad7b20544e5469268237d60 316 SUPERFAMILY SSF56935 30 316 3.66E-29 T 11-10-2018 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 128 202 1.1E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 30 111 1.4E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 Gene3D G3DSA:1.10.760.10 30 115 2.4E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 SUPERFAMILY SSF46626 24 114 4.8E-13 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 Gene3D G3DSA:1.10.760.10 119 206 3.4E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 SUPERFAMILY SSF46626 122 206 6.16E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 VV93_v1c36390 0f81f2fb5575c2dcb4debb899a21ac04 207 PIRSF PIRSF000005 4 207 2.5E-32 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 VV93_v1c44510 caf64f1e44b0d0020661b70c9157721d 718 SUPERFAMILY SSF52540 1 579 6.54E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c44510 caf64f1e44b0d0020661b70c9157721d 718 Gene3D G3DSA:3.40.50.300 1 45 2.4E-5 T 11-10-2018 VV93_v1c44510 caf64f1e44b0d0020661b70c9157721d 718 Pfam PF13166 AAA domain 15 703 4.5E-126 T 11-10-2018 IPR026866 Protein CR006, P-loop domain VV93_v1c44510 caf64f1e44b0d0020661b70c9157721d 718 Gene3D G3DSA:3.40.50.300 318 607 1.5E-9 T 11-10-2018 VV93_v1c32380 a91bc9826dfc5a4939f69faaa1f7a9b7 211 Gene3D G3DSA:3.40.50.720 1 210 7.3E-47 T 11-10-2018 VV93_v1c32380 a91bc9826dfc5a4939f69faaa1f7a9b7 211 SUPERFAMILY SSF51735 1 209 5.72E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c32380 a91bc9826dfc5a4939f69faaa1f7a9b7 211 Pfam PF13460 NAD(P)H-binding 7 197 3.6E-32 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c01250 5f96f1f9c177f917df41d6e546b76024 330 Pfam PF11168 Protein of unknown function (DUF2955) 9 148 4.0E-30 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c34810 5f96f1f9c177f917df41d6e546b76024 330 Pfam PF11168 Protein of unknown function (DUF2955) 9 148 4.0E-30 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 SUPERFAMILY SSF100950 63 294 6.7E-39 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 Pfam PF11870 Domain of unknown function (DUF3390) 384 471 5.7E-28 T 11-10-2018 IPR024569 4Fe-4S binding protein, C-terminal VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 17 454 1.0E-149 T 11-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 Gene3D G3DSA:3.40.50.10420 134 289 3.9E-13 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 Gene3D G3DSA:1.10.1060.10 290 393 5.2E-7 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 312 323 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 Pfam PF13183 4Fe-4S dicluster domain 310 376 2.6E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 SUPERFAMILY SSF46548 285 388 5.58E-16 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 VV93_v1c41860 dcdfc942b731db214c95576b0a0e843d 476 Pfam PF02589 LUD domain 68 293 2.2E-52 T 11-10-2018 IPR003741 LUD domain VV93_v1c40940 fa141c55909d44856b209c2570bb5daf 139 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 134 3.8E-11 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c40940 fa141c55909d44856b209c2570bb5daf 139 Gene3D G3DSA:3.10.180.10 11 139 2.2E-25 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c40940 fa141c55909d44856b209c2570bb5daf 139 SUPERFAMILY SSF54593 7 134 3.03E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c24130 5734f8b9c1db9af8f96042f28b4ef47a 292 Pfam PF01136 Peptidase family U32 82 236 2.4E-12 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VV93_v1c05720 053ebd112ec625c5b2c97dd18d2d33ff 206 Pfam PF03458 UPF0126 domain 95 163 9.0E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 VV93_v1c05720 053ebd112ec625c5b2c97dd18d2d33ff 206 Pfam PF03458 UPF0126 domain 8 81 5.5E-23 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 VV93_v1c13720 15a31ed1fcc66399de0a4e74481c5d00 245 Pfam PF02698 DUF218 domain 58 182 6.4E-22 T 11-10-2018 IPR003848 Domain of unknown function DUF218 VV93_v1c19490 24e13cfee358178eeb5c4b650464c3a1 282 Gene3D G3DSA:3.30.70.270 123 281 4.1E-30 T 11-10-2018 VV93_v1c19490 24e13cfee358178eeb5c4b650464c3a1 282 SMART SM00267 126 281 2.0E-15 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c19490 24e13cfee358178eeb5c4b650464c3a1 282 SUPERFAMILY SSF55073 142 280 1.33E-26 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c19490 24e13cfee358178eeb5c4b650464c3a1 282 Pfam PF00990 Diguanylate cyclase, GGDEF domain 137 279 2.2E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c19490 24e13cfee358178eeb5c4b650464c3a1 282 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 134 279 1.5E-26 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c34520 182c2d887749b8eacc0581073bb8d892 235 SUPERFAMILY SSF55681 4 233 3.98E-48 T 11-10-2018 VV93_v1c34520 182c2d887749b8eacc0581073bb8d892 235 Gene3D G3DSA:3.30.930.10 6 235 2.4E-45 T 11-10-2018 VV93_v1c43490 4621390d84fbfeb7a95656648f95fe8a 350 Pfam PF01757 Acyltransferase family 5 329 1.6E-18 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VV93_v1c03920 3d4e7ac9ac8f80f3d24feb517ff45b45 183 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 182 7.7E-86 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VV93_v1c03920 3d4e7ac9ac8f80f3d24feb517ff45b45 183 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 1.5E-76 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VV93_v1c17280 fb4842a2822ac06bf9ea48a6f37761ce 261 Gene3D G3DSA:3.90.79.10 27 182 7.9E-23 T 11-10-2018 VV93_v1c17280 fb4842a2822ac06bf9ea48a6f37761ce 261 SUPERFAMILY SSF55811 24 180 3.25E-17 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c22190 741d389d88e719991dd8e457fb2bf44e 468 Pfam PF07804 HipA-like C-terminal domain 145 417 4.1E-43 T 11-10-2018 IPR012893 HipA-like, C-terminal VV93_v1c22190 741d389d88e719991dd8e457fb2bf44e 468 Pfam PF13657 HipA N-terminal domain 7 106 2.0E-16 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 VV93_v1c22190 741d389d88e719991dd8e457fb2bf44e 468 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 25 105 4.4E-12 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 VV93_v1c38760 16bb4bf98719c2ec5d36798983ec923b 193 SUPERFAMILY SSF52738 6 191 4.05E-57 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c38760 16bb4bf98719c2ec5d36798983ec923b 193 Pfam PF01339 CheB methylesterase 11 186 2.2E-55 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 VV93_v1c38760 16bb4bf98719c2ec5d36798983ec923b 193 Gene3D G3DSA:3.40.50.180 2 192 2.3E-61 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal VV93_v1c27500 b1aa9617d4e7c3a9359a5008310ffd9e 112 Pfam PF11333 Protein of unknown function (DUF3135) 9 89 3.6E-33 T 11-10-2018 IPR021482 Protein of unknown function DUF3135 VV93_v1c41870 b414ce7ff19b3d8752a8efb515973ebf 219 Pfam PF02589 LUD domain 43 216 3.5E-30 T 11-10-2018 IPR003741 LUD domain VV93_v1c41870 b414ce7ff19b3d8752a8efb515973ebf 219 SUPERFAMILY SSF100950 36 216 1.42E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like VV93_v1c41870 b414ce7ff19b3d8752a8efb515973ebf 219 Gene3D G3DSA:3.40.50.10420 35 216 5.1E-37 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VV93_v1c29460 a3bc016c6f6f0e1985345c9aa7eef33e 365 SMART SM00257 39 87 2.0E-4 T 11-10-2018 IPR018392 LysM domain VV93_v1c29460 a3bc016c6f6f0e1985345c9aa7eef33e 365 Pfam PF01476 LysM domain 40 85 7.3E-12 T 11-10-2018 IPR018392 LysM domain VV93_v1c29460 a3bc016c6f6f0e1985345c9aa7eef33e 365 Gene3D G3DSA:3.10.350.10 38 85 6.1E-14 T 11-10-2018 IPR036779 LysM domain superfamily VV93_v1c29460 a3bc016c6f6f0e1985345c9aa7eef33e 365 SUPERFAMILY SSF54106 38 86 1.1E-6 T 11-10-2018 VV93_v1c43750 d6cd8f251e08125854f97443fa6b6b05 400 SUPERFAMILY SSF51905 2 302 6.47E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c43750 d6cd8f251e08125854f97443fa6b6b05 400 Gene3D G3DSA:3.30.9.10 86 356 9.4E-78 T 11-10-2018 VV93_v1c43750 d6cd8f251e08125854f97443fa6b6b05 400 Pfam PF01266 FAD dependent oxidoreductase 3 393 4.5E-66 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 VV93_v1c43750 d6cd8f251e08125854f97443fa6b6b05 400 Gene3D G3DSA:3.50.50.60 3 390 9.4E-78 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25220 031dd5114c2c5c27e0dfe38c2d4ab5d2 255 Pfam PF01975 Survival protein SurE 11 189 9.5E-62 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VV93_v1c25220 031dd5114c2c5c27e0dfe38c2d4ab5d2 255 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 10 240 1.5E-75 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VV93_v1c25220 031dd5114c2c5c27e0dfe38c2d4ab5d2 255 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 9 255 41.229 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VV93_v1c25220 031dd5114c2c5c27e0dfe38c2d4ab5d2 255 Gene3D G3DSA:3.40.1210.10 1 255 1.7E-97 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 VV93_v1c25220 031dd5114c2c5c27e0dfe38c2d4ab5d2 255 SUPERFAMILY SSF64167 9 253 3.01E-87 T 11-10-2018 VV93_v1c01400 d252c98f734b1cff332b3cd181c582dc 103 Gene3D G3DSA:3.30.420.470 1 100 3.2E-13 T 11-10-2018 VV93_v1c01400 d252c98f734b1cff332b3cd181c582dc 103 Pfam PF13358 DDE superfamily endonuclease 3 67 2.4E-21 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c01400 d252c98f734b1cff332b3cd181c582dc 103 SUPERFAMILY SSF53098 6 74 4.4E-7 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c34960 d252c98f734b1cff332b3cd181c582dc 103 Gene3D G3DSA:3.30.420.470 1 100 3.2E-13 T 11-10-2018 VV93_v1c34960 d252c98f734b1cff332b3cd181c582dc 103 Pfam PF13358 DDE superfamily endonuclease 3 67 2.4E-21 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c34960 d252c98f734b1cff332b3cd181c582dc 103 SUPERFAMILY SSF53098 6 74 4.4E-7 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c26370 a1412ac347d5e4255ee79ccbab4df486 136 Pfam PF09834 Predicted membrane protein (DUF2061) 66 115 5.1E-20 T 11-10-2018 IPR018638 Domain of unknown function DUF2061, membrane VV93_v1c26370 a1412ac347d5e4255ee79ccbab4df486 136 Pfam PF09834 Predicted membrane protein (DUF2061) 1 52 1.4E-21 T 11-10-2018 IPR018638 Domain of unknown function DUF2061, membrane VV93_v1c16510 fc5d6f360156eae166c0c64d374a9067 73 Pfam PF09905 DNA-binding protein VF530 6 68 8.4E-35 T 11-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 VV93_v1c16510 fc5d6f360156eae166c0c64d374a9067 73 Gene3D G3DSA:1.10.720.30 14 72 3.5E-30 T 11-10-2018 IPR036361 SAP domain superfamily VV93_v1c26830 f08c9c36ed62fe9f55a423bfa13731e3 444 Pfam PF00999 Sodium/hydrogen exchanger family 14 416 4.7E-56 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 VV93_v1c02920 9d93b82e01b8c50db874318d3153b9af 359 PIRSF PIRSF000390 1 359 3.4E-85 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c02920 9d93b82e01b8c50db874318d3153b9af 359 SUPERFAMILY SSF53383 16 358 6.58E-71 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase VV93_v1c02920 9d93b82e01b8c50db874318d3153b9af 359 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 353 3.3E-73 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VV93_v1c02920 9d93b82e01b8c50db874318d3153b9af 359 Gene3D G3DSA:3.40.640.10 2 359 1.7E-84 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 VV93_v1c34020 2e05f0c63fbbffb3324c4d3e1cb975e1 101 Pfam PF07383 Protein of unknown function (DUF1496) 42 94 8.2E-24 T 11-10-2018 IPR009971 Protein of unknown function DUF1496 VV93_v1c42820 790c688aa2043a3b9ef949fa14607972 358 Pfam PF06863 Protein of unknown function (DUF1254) 66 159 2.8E-5 T 11-10-2018 IPR010679 Domain of unknown function DUF1254 VV93_v1c42820 790c688aa2043a3b9ef949fa14607972 358 SUPERFAMILY SSF160935 8 336 1.96E-31 T 11-10-2018 VV93_v1c12920 209d10ca4e1169d7357f68bdb2561b5f 579 Gene3D G3DSA:3.20.20.70 188 495 1.2E-92 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c12920 209d10ca4e1169d7357f68bdb2561b5f 579 Pfam PF02065 Melibiase 169 352 9.3E-17 T 11-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 VV93_v1c12920 209d10ca4e1169d7357f68bdb2561b5f 579 SUPERFAMILY SSF51445 193 531 4.22E-76 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily VV93_v1c22650 2fdb0eb0b60f7bd55d38061cbdf4e589 150 Pfam PF07977 FabA-like domain 17 141 1.7E-39 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c22650 2fdb0eb0b60f7bd55d38061cbdf4e589 150 Gene3D G3DSA:3.10.129.10 2 150 2.8E-61 T 11-10-2018 VV93_v1c22650 2fdb0eb0b60f7bd55d38061cbdf4e589 150 SUPERFAMILY SSF54637 7 146 5.89E-49 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c22650 2fdb0eb0b60f7bd55d38061cbdf4e589 150 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 36.549 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c22650 2fdb0eb0b60f7bd55d38061cbdf4e589 150 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 5.9E-60 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 VV93_v1c05860 ccf82cdfae796eaac92a7a4d0541f74c 135 Pfam PF11697 Protein of unknown function (DUF3293) 36 105 2.1E-19 T 11-10-2018 IPR021710 Protein of unknown function DUF3293 VV93_v1c19440 c56b0cdee2344c302b920f53511d9d86 107 Pfam PF13737 Transposase DDE domain 3 93 7.7E-30 T 11-10-2018 IPR025668 Transposase DDE domain VV93_v1c09160 5866a4c4c249daa50f33a73010fe20a9 244 Pfam PF07556 Protein of unknown function (DUF1538) 21 242 5.6E-72 T 11-10-2018 IPR011435 Protein of unknown function DUF1538 VV93_v1c30330 879ee22f8ecfa11253c22dff276ca436 408 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 5 407 24.199 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c30330 879ee22f8ecfa11253c22dff276ca436 408 Pfam PF03616 Sodium/glutamate symporter 6 376 1.9E-154 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c30330 879ee22f8ecfa11253c22dff276ca436 408 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 9 407 1.3E-136 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 VV93_v1c16660 e3100b58b74d2042e5e78738ea966ae3 99 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 93 2.1E-13 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VV93_v1c16660 e3100b58b74d2042e5e78738ea966ae3 99 Gene3D G3DSA:3.30.2310.20 1 99 7.2E-19 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c12830 c36a40a7b9a665b33efd11ab5c307720 280 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 82 91 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site VV93_v1c12830 c36a40a7b9a665b33efd11ab5c307720 280 Gene3D G3DSA:1.20.1080.10 27 280 1.9E-95 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c12830 c36a40a7b9a665b33efd11ab5c307720 280 Pfam PF01226 Formate/nitrite transporter 14 275 2.9E-75 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c12830 c36a40a7b9a665b33efd11ab5c307720 280 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 278 8.7E-115 T 11-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 VV93_v1c12830 c36a40a7b9a665b33efd11ab5c307720 280 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 25 279 1.4E-79 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c14510 d90101519eb4f1d64b87958914c109b0 434 SUPERFAMILY SSF56954 23 428 1.06E-87 T 11-10-2018 VV93_v1c14510 d90101519eb4f1d64b87958914c109b0 434 Pfam PF02321 Outer membrane efflux protein 24 208 2.3E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c14510 d90101519eb4f1d64b87958914c109b0 434 Pfam PF02321 Outer membrane efflux protein 230 414 3.1E-30 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 VV93_v1c14510 d90101519eb4f1d64b87958914c109b0 434 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 22 428 1.1E-119 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 VV93_v1c14510 d90101519eb4f1d64b87958914c109b0 434 Gene3D G3DSA:1.20.1600.10 22 425 5.6E-80 T 11-10-2018 VV93_v1c16380 cdf5182074dc3f9c1f17c6ddc3cd4757 96 Gene3D G3DSA:3.30.2310.20 1 95 2.0E-29 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c16380 cdf5182074dc3f9c1f17c6ddc3cd4757 96 SUPERFAMILY SSF143011 1 82 3.92E-23 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily VV93_v1c16380 cdf5182074dc3f9c1f17c6ddc3cd4757 96 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 84 5.7E-11 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VV93_v1c16380 cdf5182074dc3f9c1f17c6ddc3cd4757 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 84 1.5E-13 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family VV93_v1c41040 6f3a81a4b4532fa54b0b81b5285489cc 135 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 125 6.5E-16 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 VV93_v1c41040 6f3a81a4b4532fa54b0b81b5285489cc 135 Gene3D G3DSA:3.10.50.30 45 135 7.4E-27 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 VV93_v1c41040 6f3a81a4b4532fa54b0b81b5285489cc 135 PIRSF PIRSF006092 13 127 2.4E-27 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 VV93_v1c41040 6f3a81a4b4532fa54b0b81b5285489cc 135 SUPERFAMILY SSF54534 49 126 2.49E-16 T 11-10-2018 VV93_v1c41040 6f3a81a4b4532fa54b0b81b5285489cc 135 Pfam PF14760 Rnk N-terminus 6 43 1.3E-11 T 11-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain VV93_v1c37540 d6ff02d15e5442eda615773a1351dbea 113 Pfam PF03091 CutA1 divalent ion tolerance protein 9 105 6.6E-32 T 11-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 VV93_v1c37540 d6ff02d15e5442eda615773a1351dbea 113 Gene3D G3DSA:3.30.70.120 1 109 3.3E-33 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VV93_v1c37540 d6ff02d15e5442eda615773a1351dbea 113 SUPERFAMILY SSF54913 5 107 1.96E-33 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta VV93_v1c43570 984032ce8edfbeffebfc59a8dc3a5973 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 77 3.7E-17 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain VV93_v1c43570 984032ce8edfbeffebfc59a8dc3a5973 97 SUPERFAMILY SSF54909 1 81 1.3E-23 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c43570 984032ce8edfbeffebfc59a8dc3a5973 97 Gene3D G3DSA:3.30.70.100 1 95 3.4E-25 T 11-10-2018 VV93_v1c40220 85da8b72f6225686c59121ba3b2587e1 152 PIRSF PIRSF006019 1 147 3.7E-44 T 11-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 VV93_v1c40220 85da8b72f6225686c59121ba3b2587e1 152 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 67 99 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 VV93_v1c40220 85da8b72f6225686c59121ba3b2587e1 152 Gene3D G3DSA:3.40.140.10 2 146 2.4E-40 T 11-10-2018 VV93_v1c40220 85da8b72f6225686c59121ba3b2587e1 152 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 109 2.5E-25 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain VV93_v1c40220 85da8b72f6225686c59121ba3b2587e1 152 SUPERFAMILY SSF53927 8 146 1.04E-31 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 VV93_v1c08030 faeacaab3881840c69707ebb87565b96 156 Gene3D G3DSA:3.40.50.960 1 156 1.6E-63 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08030 faeacaab3881840c69707ebb87565b96 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.189 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08030 faeacaab3881840c69707ebb87565b96 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 8.9E-57 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08030 faeacaab3881840c69707ebb87565b96 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 3.5E-54 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c08030 faeacaab3881840c69707ebb87565b96 156 SUPERFAMILY SSF52121 4 154 1.03E-59 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 VV93_v1c42660 1f52034e8471fabb52a2bb25d7f851d2 274 SUPERFAMILY SSF46785 2 79 4.76E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c42660 1f52034e8471fabb52a2bb25d7f851d2 274 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 VV93_v1c42660 1f52034e8471fabb52a2bb25d7f851d2 274 Gene3D G3DSA:1.10.10.10 2 83 1.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c08740 9c3fdbac65f6ccd1ef4630119fcb605d 149 Pfam PF04214 Protein of unknown function, DUF 48 118 8.3E-29 T 11-10-2018 IPR007332 Protein of unknown function DUF411 VV93_v1c14270 3532cf9c75f77664f69e078df99c9366 219 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 41 142 1.0E-6 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 VV93_v1c14270 3532cf9c75f77664f69e078df99c9366 219 SUPERFAMILY SSF49354 34 141 1.52E-10 T 11-10-2018 IPR008962 PapD-like superfamily VV93_v1c19880 5fb09de38cb920460d9d5accf6527531 227 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 44.115 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VV93_v1c19880 5fb09de38cb920460d9d5accf6527531 227 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 5.1E-93 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 VV93_v1c19880 5fb09de38cb920460d9d5accf6527531 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 3.5E-42 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c07880 af19242a50b4378bad0ae0bf3edd0bd5 101 Pfam PF12286 Protein of unknown function (DUF3622) 1 71 6.0E-36 T 11-10-2018 IPR022069 Protein of unknown function DUF3622 VV93_v1c13210 3bd79d2e79d29aed52507f3e73f68a57 207 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 1.4E-10 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VV93_v1c13210 3bd79d2e79d29aed52507f3e73f68a57 207 Gene3D G3DSA:1.20.120.1760 3 198 1.0E-19 T 11-10-2018 VV93_v1c13210 3bd79d2e79d29aed52507f3e73f68a57 207 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 SUPERFAMILY SSF53448 48 347 1.48E-69 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 Pfam PF00571 CBS domain 9 54 3.6E-8 T 11-10-2018 IPR000644 CBS domain VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 SMART SM00116 6 54 0.002 T 11-10-2018 IPR000644 CBS domain VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 SMART SM00116 70 118 1.7 T 11-10-2018 IPR000644 CBS domain VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 SUPERFAMILY SSF54631 6 56 4.24E-9 T 11-10-2018 VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 Gene3D G3DSA:3.10.580.10 1 115 2.6E-21 T 11-10-2018 VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 Gene3D G3DSA:3.90.550.10 122 349 6.8E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases VV93_v1c03040 d7bc121821f36232a4972baad7f5f0d2 353 Pfam PF00483 Nucleotidyl transferase 125 347 2.0E-37 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 391 4.8E-135 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 Gene3D G3DSA:3.30.9.50 80 270 1.2E-119 T 11-10-2018 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.2E-19 T 11-10-2018 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.2E-19 T 11-10-2018 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.2E-19 T 11-10-2018 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.2E-19 T 11-10-2018 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 Pfam PF01494 FAD binding domain 5 347 2.8E-27 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 Gene3D G3DSA:3.50.50.60 6 339 1.2E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 VV93_v1c25530 a3846118d4b13641d201c72059bbf292 410 SUPERFAMILY SSF51905 5 386 7.97E-60 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily VV93_v1c03360 b8e6b4d6a5b9c24759f23c6ec635b40c 140 Pfam PF01575 MaoC like domain 20 128 9.9E-24 T 11-10-2018 IPR002539 MaoC-like dehydratase domain VV93_v1c03360 b8e6b4d6a5b9c24759f23c6ec635b40c 140 SUPERFAMILY SSF54637 7 140 3.37E-38 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c03360 b8e6b4d6a5b9c24759f23c6ec635b40c 140 Gene3D G3DSA:3.10.129.10 4 140 3.6E-43 T 11-10-2018 VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 SUPERFAMILY SSF47336 2 76 1.27E-23 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.0E-16 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 Gene3D G3DSA:1.10.1200.10 1 75 1.8E-29 T 11-10-2018 IPR036736 ACP-like superfamily VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 4.7E-36 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VV93_v1c11930 43621eecd528fb806cc89fdcfb97de2a 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.776 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 VV93_v1c37080 f6cf6ae5aba5da4b4601af446ff2fb01 275 Gene3D G3DSA:3.20.20.450 22 267 1.3E-47 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37080 f6cf6ae5aba5da4b4601af446ff2fb01 275 SUPERFAMILY SSF141868 25 263 1.96E-48 T 11-10-2018 IPR035919 EAL domain superfamily VV93_v1c37080 f6cf6ae5aba5da4b4601af446ff2fb01 275 Pfam PF00563 EAL domain 26 255 1.2E-43 T 11-10-2018 IPR001633 EAL domain VV93_v1c37080 f6cf6ae5aba5da4b4601af446ff2fb01 275 SMART SM00052 13 260 9.3E-13 T 11-10-2018 IPR001633 EAL domain VV93_v1c09920 c1eb54bcbe0edc37f00ce9c75294d6e1 202 Pfam PF11659 Protein of unknown function (DUF3261) 51 194 1.3E-33 T 11-10-2018 IPR021675 Protein of unknown function DUF3261 VV93_v1c44560 697377e558e9e2244f7289a448126662 240 Pfam PF12872 OST-HTH/LOTUS domain 167 227 1.4E-11 T 11-10-2018 IPR025605 OST-HTH/LOTUS domain VV93_v1c44560 697377e558e9e2244f7289a448126662 240 Pfam PF01936 NYN domain 5 139 8.2E-31 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type VV93_v1c44560 697377e558e9e2244f7289a448126662 240 Gene3D G3DSA:3.40.50.1010 2 142 1.5E-16 T 11-10-2018 VV93_v1c44560 697377e558e9e2244f7289a448126662 240 Gene3D G3DSA:1.10.10.1880 165 235 5.9E-20 T 11-10-2018 VV93_v1c33960 fffb39a501ed8d346605cd4d41fe89a2 276 SUPERFAMILY SSF52402 2 276 8.63E-80 T 11-10-2018 VV93_v1c33960 fffb39a501ed8d346605cd4d41fe89a2 276 Pfam PF02540 NAD synthase 21 270 3.0E-61 T 11-10-2018 IPR022310 NAD/GMP synthase VV93_v1c33960 fffb39a501ed8d346605cd4d41fe89a2 276 Gene3D G3DSA:3.40.50.620 1 276 1.6E-80 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VV93_v1c33960 fffb39a501ed8d346605cd4d41fe89a2 276 TIGRFAM TIGR00552 nadE: NAD+ synthetase 20 272 2.8E-62 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 VV93_v1c33960 fffb39a501ed8d346605cd4d41fe89a2 276 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 16 274 45.04 T 11-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 VV93_v1c12040 1bb6ca982a5d71a60b58180927892488 197 Gene3D G3DSA:2.40.160.20 24 197 1.8E-10 T 11-10-2018 VV93_v1c12040 1bb6ca982a5d71a60b58180927892488 197 SUPERFAMILY SSF56925 20 197 5.76E-17 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c45650 306776485bedc95665741ca0cabd6a4a 164 Gene3D G3DSA:1.10.10.10 17 146 1.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily VV93_v1c45650 306776485bedc95665741ca0cabd6a4a 164 SUPERFAMILY SSF46785 40 106 3.91E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily VV93_v1c45650 306776485bedc95665741ca0cabd6a4a 164 Pfam PF13730 Helix-turn-helix domain 45 98 3.2E-9 T 11-10-2018 VV93_v1c02570 2bff6237cfad955cd0487dd2db91fb33 658 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 174 563 3.1E-116 T 11-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain VV93_v1c02570 2bff6237cfad955cd0487dd2db91fb33 658 Gene3D G3DSA:1.10.8.80 250 362 4.3E-123 T 11-10-2018 VV93_v1c02570 2bff6237cfad955cd0487dd2db91fb33 658 Gene3D G3DSA:3.40.50.300 155 566 4.3E-123 T 11-10-2018 VV93_v1c02570 2bff6237cfad955cd0487dd2db91fb33 658 SUPERFAMILY SSF52540 175 575 6.45E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c40860 194683c7ad5b7b372ed0ed3d98dfbfbf 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 307 326 2.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c40860 194683c7ad5b7b372ed0ed3d98dfbfbf 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 250 274 2.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c40860 194683c7ad5b7b372ed0ed3d98dfbfbf 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 287 306 2.6E-8 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 VV93_v1c40860 194683c7ad5b7b372ed0ed3d98dfbfbf 365 Pfam PF12698 ABC-2 family transporter protein 25 356 1.3E-48 T 11-10-2018 VV93_v1c10830 e21308be3cab4e35cba9f3ca6675957d 456 Pfam PF02386 Cation transport protein 50 438 2.0E-55 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 VV93_v1c10830 e21308be3cab4e35cba9f3ca6675957d 456 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 43 428 1.6E-124 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 VV93_v1c43990 6c23489eedc207ae21b2eff96cb7980b 230 Gene3D G3DSA:3.40.50.300 4 230 3.3E-72 T 11-10-2018 VV93_v1c43990 6c23489eedc207ae21b2eff96cb7980b 230 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c43990 6c23489eedc207ae21b2eff96cb7980b 230 SUPERFAMILY SSF52540 6 227 4.78E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c43990 6c23489eedc207ae21b2eff96cb7980b 230 Pfam PF00005 ABC transporter 26 174 7.5E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c43990 6c23489eedc207ae21b2eff96cb7980b 230 SMART SM00382 35 222 1.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 SUPERFAMILY SSF101386 3 105 3.93E-24 T 11-10-2018 VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 TIGRFAM TIGR00444 mazG: MazG family protein 11 260 2.0E-103 T 11-10-2018 IPR011551 NTP pyrophosphohydrolase MazG VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 Gene3D G3DSA:1.10.287.1080 132 265 4.7E-47 T 11-10-2018 VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 SUPERFAMILY SSF101386 138 240 6.54E-24 T 11-10-2018 VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 Gene3D G3DSA:1.10.287.1080 2 126 6.1E-45 T 11-10-2018 VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 28 101 7.5E-27 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VV93_v1c25290 ca1c2f5162d55b732a8acaa7b3d52020 269 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 233 1.8E-6 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VV93_v1c16700 07ca8ddb9916396ceb556c98ba875827 144 Pfam PF00583 Acetyltransferase (GNAT) family 42 124 2.0E-11 T 11-10-2018 IPR000182 GNAT domain VV93_v1c16700 07ca8ddb9916396ceb556c98ba875827 144 SUPERFAMILY SSF55729 17 132 6.52E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c16700 07ca8ddb9916396ceb556c98ba875827 144 Gene3D G3DSA:3.40.630.30 12 134 2.3E-18 T 11-10-2018 VV93_v1c31140 dd642d567632326adb753d0823ee6f33 268 Gene3D G3DSA:3.40.190.10 42 214 1.5E-11 T 11-10-2018 VV93_v1c31140 dd642d567632326adb753d0823ee6f33 268 SUPERFAMILY SSF53850 22 213 1.75E-21 T 11-10-2018 VV93_v1c31140 dd642d567632326adb753d0823ee6f33 268 Gene3D G3DSA:3.40.190.10 104 201 1.5E-11 T 11-10-2018 VV93_v1c31140 dd642d567632326adb753d0823ee6f33 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 212 1.7E-9 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c39390 9729133dc87adc3f95760ebc0a0ee082 440 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 438 1.9E-133 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VV93_v1c39390 9729133dc87adc3f95760ebc0a0ee082 440 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 440 2.1E-141 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 VV93_v1c06680 ebf4b01fb0b316c51d52fd59fb919207 466 Pfam PF16325 Peptidase family U32 C-terminal domain 371 452 6.3E-21 T 11-10-2018 IPR032525 Peptidase family U32, C-terminal VV93_v1c06680 ebf4b01fb0b316c51d52fd59fb919207 466 Pfam PF01136 Peptidase family U32 80 355 9.3E-96 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VV93_v1c06680 ebf4b01fb0b316c51d52fd59fb919207 466 Gene3D G3DSA:2.40.30.10 367 453 1.6E-8 T 11-10-2018 VV93_v1c06680 ebf4b01fb0b316c51d52fd59fb919207 466 ProSitePatterns PS01276 Peptidase family U32 signature. 167 185 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VV93_v1c13390 7edda951b1b23779491668eb2f1f32c1 400 Pfam PF07690 Major Facilitator Superfamily 24 363 1.2E-48 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 VV93_v1c13390 7edda951b1b23779491668eb2f1f32c1 400 Gene3D G3DSA:1.20.1720.10 17 395 4.4E-101 T 11-10-2018 VV93_v1c13390 7edda951b1b23779491668eb2f1f32c1 400 SUPERFAMILY SSF103473 13 398 1.27E-64 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c13390 7edda951b1b23779491668eb2f1f32c1 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 17 394 2.2E-118 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 VV93_v1c06930 0db84054d3bf18f26d3310a9b2f83495 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 19 39 2.4E-15 T 11-10-2018 IPR003849 Preprotein translocase YajC VV93_v1c06930 0db84054d3bf18f26d3310a9b2f83495 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 57 75 2.4E-15 T 11-10-2018 IPR003849 Preprotein translocase YajC VV93_v1c06930 0db84054d3bf18f26d3310a9b2f83495 109 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 19 101 5.5E-30 T 11-10-2018 IPR003849 Preprotein translocase YajC VV93_v1c06930 0db84054d3bf18f26d3310a9b2f83495 109 SMART SM01323 17 101 4.0E-39 T 11-10-2018 IPR003849 Preprotein translocase YajC VV93_v1c06930 0db84054d3bf18f26d3310a9b2f83495 109 Pfam PF02699 Preprotein translocase subunit 21 98 5.7E-26 T 11-10-2018 IPR003849 Preprotein translocase YajC VV93_v1c19930 fc5c73e71a2f45f880a326d883730dcf 528 PIRSF PIRSF006446 349 526 2.8E-32 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VV93_v1c19930 fc5c73e71a2f45f880a326d883730dcf 528 PIRSF PIRSF006446 1 330 1.2E-115 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VV93_v1c19930 fc5c73e71a2f45f880a326d883730dcf 528 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 1.7E-177 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 VV93_v1c25620 8ada67eedbad970ae99aad4992048810 206 Pfam PF01810 LysE type translocator 15 200 7.2E-42 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c31200 de275839d69b786fde0d7bc3f86d6d8b 219 Pfam PF12261 Thermostable hemolysin 35 204 1.6E-61 T 11-10-2018 IPR022050 Thermostable hemolysin VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 33 46 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 SUPERFAMILY SSF53178 20 209 3.79E-68 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 Pfam PF01195 Peptidyl-tRNA hydrolase 22 205 9.4E-53 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 20 199 35.571 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 127 137 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 20 206 7.9E-68 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 VV93_v1c08570 53e266fddd48e509b52535c298ff2ce4 211 Gene3D G3DSA:3.40.50.1470 14 211 3.0E-75 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 VV93_v1c30540 7ed116dd396d5117a1882a163694982b 169 Pfam PF11012 Protein of unknown function (DUF2850) 60 139 6.5E-32 T 11-10-2018 IPR021271 Protein of unknown function DUF2850 VV93_v1c38600 ad171ccc7eece34103a0b6a3f757cb3c 134 Gene3D G3DSA:3.30.420.270 60 129 2.1E-10 T 11-10-2018 VV93_v1c38600 ad171ccc7eece34103a0b6a3f757cb3c 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 1.5E-28 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VV93_v1c20900 d9439d75cdaa91b5c6762188ea80db57 445 PIRSF PIRSF006060 1 433 2.4E-49 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c20900 d9439d75cdaa91b5c6762188ea80db57 445 Gene3D G3DSA:1.20.1740.10 1 438 8.7E-60 T 11-10-2018 VV93_v1c20900 d9439d75cdaa91b5c6762188ea80db57 445 Pfam PF13520 Amino acid permease 8 421 1.5E-36 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 VV93_v1c19800 de7a529d572e695f1063adc2b3e15bee 138 Pfam PF03994 Domain of Unknown Function (DUF350) 17 70 7.1E-11 T 11-10-2018 IPR007140 Protein of unknown function DUF350 VV93_v1c19800 de7a529d572e695f1063adc2b3e15bee 138 Pfam PF03994 Domain of Unknown Function (DUF350) 83 136 2.4E-12 T 11-10-2018 IPR007140 Protein of unknown function DUF350 VV93_v1c35990 3bf3766929d303e34019567280644127 400 SUPERFAMILY SSF52540 150 341 1.79E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c35990 3bf3766929d303e34019567280644127 400 Gene3D G3DSA:3.40.50.300 148 384 3.7E-14 T 11-10-2018 VV93_v1c18530 3db5f0903c2c71ffb278e30d99bdb5dd 541 SMART SM00283 271 532 1.6E-48 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c18530 3db5f0903c2c71ffb278e30d99bdb5dd 541 Gene3D G3DSA:1.10.287.950 203 534 1.7E-62 T 11-10-2018 VV93_v1c18530 3db5f0903c2c71ffb278e30d99bdb5dd 541 SUPERFAMILY SSF58104 224 534 1.05E-59 T 11-10-2018 VV93_v1c18530 3db5f0903c2c71ffb278e30d99bdb5dd 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 497 8.8E-40 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 VV93_v1c18530 3db5f0903c2c71ffb278e30d99bdb5dd 541 SMART SM00304 203 256 2.0E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 VV93_v1c16430 e97d81f5b1dfd7aa8b6c23fd4391d6db 151 Pfam PF13673 Acetyltransferase (GNAT) domain 40 126 1.1E-11 T 11-10-2018 IPR000182 GNAT domain VV93_v1c16430 e97d81f5b1dfd7aa8b6c23fd4391d6db 151 SUPERFAMILY SSF55729 12 131 7.03E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c16430 e97d81f5b1dfd7aa8b6c23fd4391d6db 151 Gene3D G3DSA:3.40.630.30 10 131 5.4E-16 T 11-10-2018 VV93_v1c18830 2cb8d493e631ca9eb441221e4c810193 420 Gene3D G3DSA:1.20.1420.20 19 403 1.7E-84 T 11-10-2018 IPR038352 Imelysin-like domain superfamily VV93_v1c18830 2cb8d493e631ca9eb441221e4c810193 420 Pfam PF09375 Imelysin 40 398 9.9E-99 T 11-10-2018 IPR018976 Imelysin-like domain VV93_v1c19530 95a82f28b882d2f6754c32c64606ee7a 215 SMART SM01007 13 192 8.5E-62 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c19530 95a82f28b882d2f6754c32c64606ee7a 215 SUPERFAMILY SSF53639 6 210 1.28E-62 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c19530 95a82f28b882d2f6754c32c64606ee7a 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 14 191 2.1E-48 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal VV93_v1c19530 95a82f28b882d2f6754c32c64606ee7a 215 Gene3D G3DSA:3.40.225.10 6 213 1.5E-61 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily VV93_v1c17500 2e90c1aa98613984bd02e32a857d4f4e 387 SUPERFAMILY SSF56935 24 387 6.6E-28 T 11-10-2018 VV93_v1c17500 2e90c1aa98613984bd02e32a857d4f4e 387 Gene3D G3DSA:2.40.160.10 160 381 1.3E-6 T 11-10-2018 IPR023614 Porin domain superfamily VV93_v1c39810 d915355fd34d929b1f88b990b4cd804b 375 SUPERFAMILY SSF52096 16 344 1.51E-55 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily VV93_v1c39810 d915355fd34d929b1f88b990b4cd804b 375 Gene3D G3DSA:3.90.226.10 4 375 1.1E-113 T 11-10-2018 VV93_v1c39810 d915355fd34d929b1f88b990b4cd804b 375 Pfam PF16113 Enoyl-CoA hydratase/isomerase 20 358 3.8E-108 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 VV93_v1c21400 d7f11cca6785c2b3cb31de059e78a18d 154 SUPERFAMILY SSF53254 1 144 4.71E-22 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c21400 d7f11cca6785c2b3cb31de059e78a18d 154 Gene3D G3DSA:3.40.50.1240 1 154 1.6E-34 T 11-10-2018 IPR029033 Histidine phosphatase superfamily VV93_v1c21400 d7f11cca6785c2b3cb31de059e78a18d 154 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 77 1.4E-8 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c21400 d7f11cca6785c2b3cb31de059e78a18d 154 SMART SM00855 2 116 4.7E-6 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 VV93_v1c21400 d7f11cca6785c2b3cb31de059e78a18d 154 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 152 6.7E-34 T 11-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 VV93_v1c15730 3cc7fd00c908a89f94480c9ff29e8672 262 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 120 256 2.9E-17 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 VV93_v1c15730 3cc7fd00c908a89f94480c9ff29e8672 262 Gene3D G3DSA:1.10.530.10 116 258 1.2E-13 T 11-10-2018 VV93_v1c04840 5d654d2f2da4ed1cab262c43b5557475 212 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 3 212 7.4E-37 T 11-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 VV93_v1c04840 5d654d2f2da4ed1cab262c43b5557475 212 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 4 212 2.1E-45 T 11-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 VV93_v1c04840 5d654d2f2da4ed1cab262c43b5557475 212 Gene3D G3DSA:3.30.70.2540 1 212 4.4E-55 T 11-10-2018 VV93_v1c16590 bfc45c56cb4afd3b791b00aa27e7d4cb 173 Pfam PF13527 Acetyltransferase (GNAT) domain 9 125 1.6E-10 T 11-10-2018 VV93_v1c16590 bfc45c56cb4afd3b791b00aa27e7d4cb 173 SUPERFAMILY SSF55729 10 132 2.36E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c16590 bfc45c56cb4afd3b791b00aa27e7d4cb 173 Gene3D G3DSA:3.40.630.30 1 161 7.4E-24 T 11-10-2018 VV93_v1c36660 f00e9390b3abba195d31d2f2bde34338 183 Pfam PF14316 Domain of unknown function (DUF4381) 15 156 8.6E-26 T 11-10-2018 IPR025489 Protein of unknown function (DUF4381 VV93_v1c43040 0e9f96152131431b14dfeb032e8f5f0b 335 Pfam PF11168 Protein of unknown function (DUF2955) 9 147 6.5E-18 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c14910 d61852d8cc86328f029696fe10437e18 213 Pfam PF02397 Bacterial sugar transferase 15 208 1.2E-62 T 11-10-2018 IPR003362 Bacterial sugar transferase VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 PIRSF PIRSF003230 1 125 1.2E-44 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 Pfam PF03061 Thioesterase superfamily 9 94 4.4E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 SUPERFAMILY SSF54637 1 121 1.87E-37 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 1 119 2.8E-47 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 Gene3D G3DSA:3.10.129.10 1 124 1.2E-38 T 11-10-2018 VV93_v1c19890 519c6656c81594ec5c06bd44682ddfea 126 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 1 114 3.2E-37 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 VV93_v1c34410 d68c73ca31a551826af83b0fc827c2be 190 Gene3D G3DSA:2.170.170.11 14 133 9.6E-31 T 11-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c34410 d68c73ca31a551826af83b0fc827c2be 190 SUPERFAMILY SSF51645 20 186 9.02E-24 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 VV93_v1c13340 2d25d48bddab53864be1fbe5316f0c74 129 Gene3D G3DSA:3.10.450.40 58 120 1.1E-7 T 11-10-2018 VV93_v1c13900 d21a4cb877e5759040f0a56057db9fcb 341 Pfam PF01032 FecCD transport family 30 336 5.4E-83 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 VV93_v1c13900 d21a4cb877e5759040f0a56057db9fcb 341 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 13 339 30.122 T 11-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 VV93_v1c13900 d21a4cb877e5759040f0a56057db9fcb 341 Gene3D G3DSA:1.10.3470.10 14 338 1.4E-94 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c13900 d21a4cb877e5759040f0a56057db9fcb 341 SUPERFAMILY SSF81345 17 336 1.09E-80 T 11-10-2018 IPR037294 ABC transporter, BtuC-like VV93_v1c04910 563c5cc113bb4ec072a91a47be607962 149 Gene3D G3DSA:3.10.450.430 1 141 1.6E-26 T 11-10-2018 VV93_v1c04910 563c5cc113bb4ec072a91a47be607962 149 Pfam PF10980 Protein of unknown function (DUF2787) 15 138 5.4E-33 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c04270 af7e49758ade8040dc4fe9fba9e14796 105 Gene3D G3DSA:3.30.750.24 10 102 1.7E-11 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c04270 af7e49758ade8040dc4fe9fba9e14796 105 SUPERFAMILY SSF52091 2 96 3.34E-15 T 11-10-2018 IPR036513 STAS domain superfamily VV93_v1c04270 af7e49758ade8040dc4fe9fba9e14796 105 Pfam PF13466 STAS domain 14 92 9.6E-18 T 11-10-2018 IPR002645 STAS domain VV93_v1c41010 95fce7fa99b34788160ab9158afdf4d0 442 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 181 405 4.7E-10 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c41010 95fce7fa99b34788160ab9158afdf4d0 442 Gene3D G3DSA:3.60.10.10 169 441 1.3E-64 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c41010 95fce7fa99b34788160ab9158afdf4d0 442 SUPERFAMILY SSF56219 175 440 1.02E-64 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c07420 0467ec7c0b56ee76ae2338257e385a63 250 Pfam PF11726 Inovirus Gp2 46 225 4.0E-43 T 11-10-2018 VV93_v1c27620 efc6b5403396d3a9ea6b59f5ed822561 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 3 118 1.2E-47 T 11-10-2018 IPR017462 Sulphur relay, TusC/DsrF VV93_v1c27620 efc6b5403396d3a9ea6b59f5ed822561 118 Gene3D G3DSA:3.40.1260.10 2 118 2.8E-40 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c27620 efc6b5403396d3a9ea6b59f5ed822561 118 SUPERFAMILY SSF75169 3 118 1.27E-37 T 11-10-2018 IPR027396 DsrEFH-like VV93_v1c27620 efc6b5403396d3a9ea6b59f5ed822561 118 Pfam PF02635 DsrE/DsrF-like family 4 118 6.2E-27 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein VV93_v1c41490 1cd2a35c897ecc57c1c0a275af396064 98 Pfam PF01541 GIY-YIG catalytic domain 10 79 1.8E-13 T 11-10-2018 IPR000305 GIY-YIG endonuclease VV93_v1c41490 1cd2a35c897ecc57c1c0a275af396064 98 Gene3D G3DSA:3.40.1440.10 6 96 2.5E-25 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c41490 1cd2a35c897ecc57c1c0a275af396064 98 SUPERFAMILY SSF82771 10 79 2.35E-11 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 VV93_v1c02560 386c1b3fa6f82d2c8762041d008f311f 118 Pfam PF07878 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 8 44 1.4E-7 T 11-10-2018 IPR012869 CopG-like ribbon-helix-helix domain VV93_v1c16630 8cc6bdfae798b2c5f70d4aa5e8917ef8 177 Gene3D G3DSA:3.40.50.300 1 151 4.6E-16 T 11-10-2018 VV93_v1c16630 8cc6bdfae798b2c5f70d4aa5e8917ef8 177 Pfam PF01202 Shikimate kinase 10 42 1.0E-4 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 VV93_v1c16630 8cc6bdfae798b2c5f70d4aa5e8917ef8 177 SUPERFAMILY SSF52540 1 154 2.97E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c32700 169190f4030f6658873fcc1d279f4833 179 Pfam PF13689 Domain of unknown function (DUF4154) 35 171 3.5E-23 T 11-10-2018 IPR025293 YfiR-like VV93_v1c31280 2b6242c4d65cc7974db4fe6b09a065df 293 SUPERFAMILY SSF161098 25 293 1.06E-61 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31280 2b6242c4d65cc7974db4fe6b09a065df 293 Gene3D G3DSA:1.10.3720.10 21 284 1.0E-56 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c31280 2b6242c4d65cc7974db4fe6b09a065df 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 276 3.1E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c12590 13a4abdf661a65b4b4e7daa158934844 404 Pfam PF00294 pfkB family carbohydrate kinase 47 262 6.2E-10 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB VV93_v1c12590 13a4abdf661a65b4b4e7daa158934844 404 SUPERFAMILY SSF53613 1 387 1.01E-43 T 11-10-2018 IPR029056 Ribokinase-like VV93_v1c17130 48f2dd65076800bc702c116c9de98750 266 Pfam PF12119 Protein of unknown function (DUF3581) 26 242 1.1E-98 T 11-10-2018 IPR021974 Protein of unknown function DUF3581 VV93_v1c44150 2321c0a92eb017ebc97bb3bdf14ef2e9 113 SUPERFAMILY SSF53062 1 107 8.24E-31 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 VV93_v1c44150 2321c0a92eb017ebc97bb3bdf14ef2e9 113 Pfam PF03610 PTS system fructose IIA component 4 108 8.2E-30 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 VV93_v1c44150 2321c0a92eb017ebc97bb3bdf14ef2e9 113 Gene3D G3DSA:3.40.50.510 1 111 4.1E-31 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 VV93_v1c27700 5c1c1e7a2b4c96d7c95a69b258b69cfa 68 Pfam PF09526 Probable metal-binding protein (DUF2387) 6 55 6.6E-20 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VV93_v1c27700 5c1c1e7a2b4c96d7c95a69b258b69cfa 68 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 4 62 4.8E-32 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 VV93_v1c26200 7f99ff87fba4ed52b02fb64d16792ca3 266 Pfam PF13280 WYL domain 97 261 6.5E-20 T 11-10-2018 IPR026881 WYL domain VV93_v1c26200 7f99ff87fba4ed52b02fb64d16792ca3 266 Pfam PF08220 DeoR-like helix-turn-helix domain 6 43 3.1E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 VV93_v1c34080 257f676a7f99468039b9b4851f9e8360 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 134 3.7E-23 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 VV93_v1c25350 0d1d61535f0920a3acdfd97cc82397a2 426 SUPERFAMILY SSF56935 28 426 6.23E-17 T 11-10-2018 VV93_v1c03250 02db853e0a872b6d504c4cc694cd97c0 340 SUPERFAMILY SSF51735 1 338 5.85E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c03250 02db853e0a872b6d504c4cc694cd97c0 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 19 330 3.3E-55 T 11-10-2018 IPR016040 NAD(P)-binding domain VV93_v1c03250 02db853e0a872b6d504c4cc694cd97c0 340 Gene3D G3DSA:3.90.25.10 193 334 1.9E-112 T 11-10-2018 VV93_v1c03250 02db853e0a872b6d504c4cc694cd97c0 340 Gene3D G3DSA:3.40.50.720 19 322 1.9E-112 T 11-10-2018 VV93_v1c34240 d8803753c40b7cb538a9e06514e0d6c8 222 Pfam PF06912 Protein of unknown function (DUF1275) 13 208 4.7E-30 T 11-10-2018 IPR010699 Protein of unknown function DUF1275 VV93_v1c41610 e5d726a8cacc63996f6a96e13a63c47b 157 Gene3D G3DSA:3.40.30.10 2 157 6.4E-60 T 11-10-2018 VV93_v1c41610 e5d726a8cacc63996f6a96e13a63c47b 157 Pfam PF08534 Redoxin 4 154 4.9E-39 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 VV93_v1c41610 e5d726a8cacc63996f6a96e13a63c47b 157 SUPERFAMILY SSF52833 1 156 1.89E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily VV93_v1c38640 66dd34acc39f7f89bfa1b7f6596e6c03 162 Gene3D G3DSA:3.40.50.1010 2 161 1.2E-56 T 11-10-2018 VV93_v1c38640 66dd34acc39f7f89bfa1b7f6596e6c03 162 Pfam PF01936 NYN domain 7 155 1.5E-40 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type VV93_v1c45160 797031104f71ae54993d81f25606037e 237 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 73 179 1.4E-13 T 11-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted VV93_v1c45160 797031104f71ae54993d81f25606037e 237 Gene3D G3DSA:3.10.620.30 32 223 1.0E-72 T 11-10-2018 VV93_v1c30180 371bbacc5aefe1c939a92428ec7c21b8 251 SUPERFAMILY SSF53850 22 250 2.86E-23 T 11-10-2018 VV93_v1c30180 371bbacc5aefe1c939a92428ec7c21b8 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 250 2.9E-10 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VV93_v1c30180 371bbacc5aefe1c939a92428ec7c21b8 251 Gene3D G3DSA:3.40.190.10 33 250 1.4E-15 T 11-10-2018 VV93_v1c30180 371bbacc5aefe1c939a92428ec7c21b8 251 Gene3D G3DSA:3.40.190.10 111 212 1.4E-15 T 11-10-2018 VV93_v1c39260 036c074e9374ccee20cbffb958ff5dc8 157 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 8 147 1.9E-34 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein VV93_v1c39260 036c074e9374ccee20cbffb958ff5dc8 157 Pfam PF04965 Gene 25-like lysozyme 33 133 1.8E-16 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD VV93_v1c39260 036c074e9374ccee20cbffb958ff5dc8 157 SUPERFAMILY SSF160719 33 142 6.28E-9 T 11-10-2018 VV93_v1c14490 99129639442c211ed91bf1961108687d 116 Pfam PF11042 Protein of unknown function (DUF2750) 13 113 6.1E-33 T 11-10-2018 IPR021284 Protein of unknown function DUF2750 VV93_v1c19900 9cd622e54b8a443a8a2360426b4e16f7 100 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 8 99 1.0E-35 T 11-10-2018 IPR011846 Cyd operon protein YbgE VV93_v1c19900 9cd622e54b8a443a8a2360426b4e16f7 100 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 20 96 2.2E-28 T 11-10-2018 IPR011846 Cyd operon protein YbgE VV93_v1c27950 0f5a51613d18c943f3951e0bf7f884ec 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 59 2.4E-24 T 11-10-2018 IPR019201 Protein of unknown function DUF2065 VV93_v1c34840 fdb562cd1db2ddd285bd040f54ee2e05 226 Gene3D G3DSA:1.10.287.70 124 224 2.9E-19 T 11-10-2018 VV93_v1c34840 fdb562cd1db2ddd285bd040f54ee2e05 226 SUPERFAMILY SSF81324 126 218 7.59E-18 T 11-10-2018 VV93_v1c34840 fdb562cd1db2ddd285bd040f54ee2e05 226 Pfam PF07885 Ion channel 134 217 1.0E-16 T 11-10-2018 IPR013099 Potassium channel domain VV93_v1c01280 fdb562cd1db2ddd285bd040f54ee2e05 226 Gene3D G3DSA:1.10.287.70 124 224 2.9E-19 T 11-10-2018 VV93_v1c01280 fdb562cd1db2ddd285bd040f54ee2e05 226 SUPERFAMILY SSF81324 126 218 7.59E-18 T 11-10-2018 VV93_v1c01280 fdb562cd1db2ddd285bd040f54ee2e05 226 Pfam PF07885 Ion channel 134 217 1.0E-16 T 11-10-2018 IPR013099 Potassium channel domain VV93_v1c37560 bbfd997e12846d2cf8c969ffc7936562 279 SUPERFAMILY SSF51197 7 276 5.77E-62 T 11-10-2018 VV93_v1c37560 bbfd997e12846d2cf8c969ffc7936562 279 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 152 253 1.1E-15 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VV93_v1c37560 bbfd997e12846d2cf8c969ffc7936562 279 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 11 96 6.5E-10 T 11-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain VV93_v1c37560 bbfd997e12846d2cf8c969ffc7936562 279 Gene3D G3DSA:2.60.120.330 1 279 8.8E-97 T 11-10-2018 IPR027443 Isopenicillin N synthase-like VV93_v1c34670 0785e5ecef8e276ba685b63e2094c862 455 SUPERFAMILY SSF143548 16 154 1.49E-44 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VV93_v1c34670 0785e5ecef8e276ba685b63e2094c862 455 Gene3D G3DSA:3.30.1330.90 10 156 1.1E-50 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 VV93_v1c34670 0785e5ecef8e276ba685b63e2094c862 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 447 3.8E-200 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VV93_v1c34670 0785e5ecef8e276ba685b63e2094c862 455 Pfam PF03313 Serine dehydratase alpha chain 182 446 8.0E-95 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit VV93_v1c34670 0785e5ecef8e276ba685b63e2094c862 455 Pfam PF03315 Serine dehydratase beta chain 3 152 4.0E-54 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 VV93_v1c09680 d437cfca2d61122366ae90099c62ba61 198 Gene3D G3DSA:3.10.180.10 6 198 5.0E-65 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c09680 d437cfca2d61122366ae90099c62ba61 198 SUPERFAMILY SSF54593 3 197 2.25E-70 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c09680 d437cfca2d61122366ae90099c62ba61 198 Pfam PF06185 YecM protein 12 196 6.2E-71 T 11-10-2018 IPR010393 Protein of unknown function DUF991 VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 143 160 7.1E-30 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 201 211 7.1E-30 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 224 239 7.1E-30 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 212 223 7.1E-30 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 Gene3D G3DSA:1.20.120.1220 124 284 1.4E-5 T 11-10-2018 VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 Pfam PF01478 Type IV leader peptidase family 137 244 4.1E-27 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VV93_v1c24920 1c858ad7ba10571622e3a24e9f991677 289 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 17 124 2.3E-34 T 11-10-2018 IPR010627 Peptidase A24A, N-terminal VV93_v1c09170 956c9989f50e61899ecdf76f48feb746 264 Pfam PF07556 Protein of unknown function (DUF1538) 21 246 5.4E-68 T 11-10-2018 IPR011435 Protein of unknown function DUF1538 VV93_v1c17730 85e6ba576c394c276f1fc370668f7e00 143 Pfam PF01478 Type IV leader peptidase family 10 109 2.9E-8 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VV93_v1c23740 5ab0da4fa72a084edcac19883e32755c 145 Pfam PF07811 TadE-like protein 12 54 5.3E-10 T 11-10-2018 IPR012495 TadE-like VV93_v1c35730 ce4f89bf5ece0c6a5fa29cff47bee97f 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 321 2.4E-53 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c20990 b4e1945d7b5b4872074e426494977d90 274 Pfam PF13847 Methyltransferase domain 88 204 2.9E-13 T 11-10-2018 IPR025714 Methyltransferase domain VV93_v1c20990 b4e1945d7b5b4872074e426494977d90 274 SUPERFAMILY SSF53335 4 258 7.7E-46 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c20990 b4e1945d7b5b4872074e426494977d90 274 Gene3D G3DSA:3.40.50.150 1 273 1.4E-79 T 11-10-2018 VV93_v1c20990 b4e1945d7b5b4872074e426494977d90 274 PIRSF PIRSF018249 1 273 6.7E-85 T 11-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 VV93_v1c19350 314d26e9473f57ff55aea6483569fdc5 306 Pfam PF13737 Transposase DDE domain 19 129 5.2E-45 T 11-10-2018 IPR025668 Transposase DDE domain VV93_v1c02260 847f6b251406de115ed46e28bb3d3c58 175 Pfam PF01618 MotA/TolQ/ExbB proton channel family 51 168 2.5E-20 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c43550 24f30419442dd421029e014c66d84d4d 144 SUPERFAMILY SSF54637 8 137 8.78E-34 T 11-10-2018 IPR029069 HotDog domain superfamily VV93_v1c43550 24f30419442dd421029e014c66d84d4d 144 Pfam PF13279 Thioesterase-like superfamily 16 136 3.5E-21 T 11-10-2018 VV93_v1c43550 24f30419442dd421029e014c66d84d4d 144 Gene3D G3DSA:3.10.129.10 3 137 2.0E-40 T 11-10-2018 VV93_v1c37340 85b204ea0c1135436342da4cdff0f3d2 157 Pfam PF06496 Protein of unknown function (DUF1097) 9 141 4.5E-39 T 11-10-2018 IPR009476 Protein of unknown function DUF1097 VV93_v1c08830 0752662846074612c3ff241c5eb63189 141 SUPERFAMILY SSF140566 1 113 3.53E-20 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 VV93_v1c08830 0752662846074612c3ff241c5eb63189 141 Pfam PF05130 FlgN protein 2 131 7.3E-25 T 11-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 VV93_v1c05160 cf63a4294fa9555163244a000ef2bfee 419 Pfam PF01384 Phosphate transporter family 26 407 1.5E-113 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 VV93_v1c40600 6a83ee6c467b3b9ffadb50449653858a 237 Pfam PF03591 AzlC protein 25 163 1.9E-34 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease VV93_v1c38670 1c2359c697c3e47f44ad1c5cb8c06afb 285 Gene3D G3DSA:1.20.1080.10 1 250 5.6E-66 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 VV93_v1c38670 1c2359c697c3e47f44ad1c5cb8c06afb 285 Pfam PF01226 Formate/nitrite transporter 8 257 3.7E-61 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 VV93_v1c01870 b59d40d2c73f066114e8bcc81eb4614a 213 Pfam PF11172 Protein of unknown function (DUF2959) 13 210 6.2E-89 T 11-10-2018 IPR021342 Protein of unknown function DUF2959 VV93_v1c02540 3d0db315d583b75c5f10f07fe3ee9861 860 Gene3D G3DSA:3.40.50.300 4 230 3.6E-5 T 11-10-2018 VV93_v1c02540 3d0db315d583b75c5f10f07fe3ee9861 860 Pfam PF04851 Type III restriction enzyme, res subunit 2 224 3.1E-12 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 VV93_v1c02540 3d0db315d583b75c5f10f07fe3ee9861 860 Gene3D G3DSA:3.40.50.300 231 444 9.1E-8 T 11-10-2018 VV93_v1c02540 3d0db315d583b75c5f10f07fe3ee9861 860 SUPERFAMILY SSF52540 36 411 1.82E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.3E-28 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 PIRSF PIRSF004669 1 89 2.3E-30 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 6.9E-33 T 11-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.0E-17 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.0E-17 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VV93_v1c21730 1688dba375e2077d4a5333347c3ce287 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.0E-17 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 VV93_v1c25600 291c67763b3b2703d13096b9a8442179 230 Gene3D G3DSA:3.30.70.2970 41 148 8.4E-51 T 11-10-2018 VV93_v1c25600 291c67763b3b2703d13096b9a8442179 230 Pfam PF04402 Protein of unknown function (DUF541) 30 227 1.4E-42 T 11-10-2018 IPR007497 Protein of unknown function DUF541 VV93_v1c25600 291c67763b3b2703d13096b9a8442179 230 Gene3D G3DSA:3.30.110.170 31 227 8.4E-51 T 11-10-2018 VV93_v1c10000 6c54027905fb3d8f9daee5a795c8f3f8 185 Pfam PF04279 Intracellular septation protein A 16 157 2.9E-6 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 VV93_v1c38390 99b4bc1f8195591fd170f6000b1fd271 297 Gene3D G3DSA:3.60.10.10 24 295 8.0E-27 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c38390 99b4bc1f8195591fd170f6000b1fd271 297 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 32 287 9.0E-7 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase VV93_v1c38390 99b4bc1f8195591fd170f6000b1fd271 297 SUPERFAMILY SSF56219 27 295 2.62E-29 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VV93_v1c05700 f98d8b6f81b15423f49a56e661c6178a 259 Pfam PF01925 Sulfite exporter TauE/SafE 11 246 5.7E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c38450 442366b6ea25c50a85783999959e7b60 61 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 2.2E-14 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 VV93_v1c20530 bcbda3524f11dea8b56971b39bd24687 326 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 28 323 3.9E-86 T 11-10-2018 IPR018707 Protein of unknown function DUF2219 VV93_v1c20530 bcbda3524f11dea8b56971b39bd24687 326 Gene3D G3DSA:2.40.128.140 21 324 5.6E-56 T 11-10-2018 IPR037107 Putative outer membrane protein superfamily VV93_v1c16220 6a24065088e67ceef0836dc3632cf9bf 456 PIRSF PIRSF006603 5 454 7.7E-58 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c16220 6a24065088e67ceef0836dc3632cf9bf 456 Pfam PF01554 MatE 243 403 7.0E-35 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c16220 6a24065088e67ceef0836dc3632cf9bf 456 Pfam PF01554 MatE 17 176 3.9E-34 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c16220 6a24065088e67ceef0836dc3632cf9bf 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 421 1.9E-113 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c21550 75982410a5e4c2f06adc41b377d6f801 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 4.4E-20 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VV93_v1c21550 75982410a5e4c2f06adc41b377d6f801 68 Pfam PF04995 Heme exporter protein D (CcmD) 13 55 8.7E-17 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 VV93_v1c15330 bd98d8b6a835ea475484404f649d3f05 57 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 30.214 T 11-10-2018 IPR007040 Ribosome modulation factor VV93_v1c15330 bd98d8b6a835ea475484404f649d3f05 57 Gene3D G3DSA:1.10.10.620 1 57 2.5E-29 T 11-10-2018 IPR023200 Ribosome modulation factor domain superfamily VV93_v1c15330 bd98d8b6a835ea475484404f649d3f05 57 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 52 2.0E-23 T 11-10-2018 IPR007040 Ribosome modulation factor VV93_v1c15330 bd98d8b6a835ea475484404f649d3f05 57 Pfam PF04957 Ribosome modulation factor 1 54 8.0E-29 T 11-10-2018 IPR007040 Ribosome modulation factor VV93_v1c36110 b0b3aa4353ea4f4698e43956eeb62a56 265 SUPERFAMILY SSF53474 12 249 2.85E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c36110 b0b3aa4353ea4f4698e43956eeb62a56 265 Gene3D G3DSA:3.40.50.1820 9 239 2.5E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c36110 b0b3aa4353ea4f4698e43956eeb62a56 265 Pfam PF01764 Lipase (class 3) 63 207 3.8E-27 T 11-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 127 25.7 T 11-10-2018 IPR023006 Uncharacterised protein family UPF0225 VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 SUPERFAMILY SSF103642 147 167 3.6E-8 T 11-10-2018 VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 Pfam PF02810 SEC-C motif 4 18 5.5E-6 T 11-10-2018 IPR004027 SEC-C motif VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 Pfam PF02810 SEC-C motif 150 167 4.9E-10 T 11-10-2018 IPR004027 SEC-C motif VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 SUPERFAMILY SSF54427 29 128 3.21E-34 T 11-10-2018 IPR032710 NTF2-like domain superfamily VV93_v1c12710 c4c641344b917de1e7eaf3ac54157456 167 Gene3D G3DSA:3.10.450.50 1 167 2.0E-52 T 11-10-2018 VV93_v1c44950 ac262cba6dab0926a700790c978c81da 639 Gene3D G3DSA:3.40.190.10 69 346 5.9E-43 T 11-10-2018 VV93_v1c44950 ac262cba6dab0926a700790c978c81da 639 SUPERFAMILY SSF53850 83 625 4.89E-79 T 11-10-2018 VV93_v1c44950 ac262cba6dab0926a700790c978c81da 639 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 534 2.4E-76 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c44950 ac262cba6dab0926a700790c978c81da 639 Gene3D G3DSA:3.10.105.10 351 600 1.8E-37 T 11-10-2018 VV93_v1c33030 bd10d25d718fb0b87f8810b34610e8bc 242 Pfam PF06629 MltA-interacting protein MipA 33 242 7.1E-35 T 11-10-2018 IPR010583 MltA-interacting MipA VV93_v1c32260 8cfff6582f87de32e16123aeec0c24f5 301 SUPERFAMILY SSF103481 42 138 1.57E-11 T 11-10-2018 VV93_v1c32260 8cfff6582f87de32e16123aeec0c24f5 301 Pfam PF00892 EamA-like transporter family 9 135 9.1E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32260 8cfff6582f87de32e16123aeec0c24f5 301 Pfam PF00892 EamA-like transporter family 150 283 2.8E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 VV93_v1c32260 8cfff6582f87de32e16123aeec0c24f5 301 SUPERFAMILY SSF103481 185 286 1.19E-13 T 11-10-2018 VV93_v1c02730 fb033baecd821f341bf9f8d6b9c05c26 312 PIRSF PIRSF026649 4 307 4.2E-79 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VV93_v1c02730 fb033baecd821f341bf9f8d6b9c05c26 312 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 7 305 1.8E-129 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VV93_v1c02730 fb033baecd821f341bf9f8d6b9c05c26 312 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 298 1.4E-75 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 VV93_v1c02730 fb033baecd821f341bf9f8d6b9c05c26 312 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 309 46.801 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 VV93_v1c17890 fefa0a3fe2a911a8eb0623e9a2c88a96 234 Pfam PF03352 Methyladenine glycosylase 43 134 2.7E-15 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 VV93_v1c17890 fefa0a3fe2a911a8eb0623e9a2c88a96 234 Gene3D G3DSA:1.10.340.30 36 160 9.8E-19 T 11-10-2018 VV93_v1c17890 fefa0a3fe2a911a8eb0623e9a2c88a96 234 SUPERFAMILY SSF48150 39 184 1.73E-38 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 VV93_v1c00980 7cb944d5691c78f67aecc6e10398e1f4 197 Pfam PF01914 MarC family integral membrane protein 3 192 1.3E-54 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c00980 7cb944d5691c78f67aecc6e10398e1f4 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 189 1.4E-30 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c07430 6b14509a21e53255be496a340cc671fa 209 Pfam PF11726 Inovirus Gp2 45 207 2.0E-33 T 11-10-2018 VV93_v1c30840 eccaaefaa42dd2e2ff188e1bf3c83052 339 Pfam PF04018 Domain of unknown function (DUF368) 46 290 7.1E-97 T 11-10-2018 IPR007163 Protein of unknown function DUF368 VV93_v1c23460 d68fe564d3fe72afa6fbc4d4f1c750fd 394 Pfam PF05940 NnrS protein 16 388 4.3E-106 T 11-10-2018 IPR010266 NnrS VV93_v1c11410 389e45be803e00650066e10870c86a1a 293 Gene3D G3DSA:3.20.20.140 3 250 2.1E-83 T 11-10-2018 VV93_v1c11410 389e45be803e00650066e10870c86a1a 293 SUPERFAMILY SSF89550 1 275 5.49E-55 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 VV93_v1c11410 389e45be803e00650066e10870c86a1a 293 Gene3D G3DSA:1.10.150.650 98 169 2.1E-83 T 11-10-2018 VV93_v1c11410 389e45be803e00650066e10870c86a1a 293 Pfam PF02811 PHP domain 4 163 1.8E-10 T 11-10-2018 IPR004013 PHP domain GO:0003824 VV93_v1c11410 389e45be803e00650066e10870c86a1a 293 SMART SM00481 3 70 7.8E-17 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal VV93_v1c04920 3b569cbca93eb2264d214bd487d3bbd5 143 Pfam PF10980 Protein of unknown function (DUF2787) 16 141 4.1E-43 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c04920 3b569cbca93eb2264d214bd487d3bbd5 143 Gene3D G3DSA:3.10.450.430 1 143 1.3E-49 T 11-10-2018 VV93_v1c09940 13b6572102d8d067f3c13ed15231ffac 210 SUPERFAMILY SSF89392 31 197 1.22E-23 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX VV93_v1c09940 13b6572102d8d067f3c13ed15231ffac 210 Gene3D G3DSA:2.50.20.10 29 210 1.2E-24 T 11-10-2018 VV93_v1c09940 13b6572102d8d067f3c13ed15231ffac 210 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 44 198 4.6E-12 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 Pfam PF08238 Sel1 repeat 74 106 0.03 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 Pfam PF08238 Sel1 repeat 108 143 1.7E-5 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 Gene3D G3DSA:1.25.40.10 34 211 8.3E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 SMART SM00671 144 179 22.0 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 SMART SM00671 108 143 2.9E-6 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 SMART SM00671 72 107 0.0067 T 11-10-2018 IPR006597 Sel1-like repeat VV93_v1c27930 bc601cfc77b77aa3fcf0f5182e59e127 211 SUPERFAMILY SSF81901 64 186 9.29E-23 T 11-10-2018 VV93_v1c18230 8ba644a84c5d6acba5192813ca064068 319 Pfam PF14321 Domain of unknown function (DUF4382) 29 176 1.4E-24 T 11-10-2018 IPR025491 Domain of unknown function DUF4382 VV93_v1c16820 bb52ea8ed2cb673924398191d5d4d843 171 Pfam PF13302 Acetyltransferase (GNAT) domain 9 147 1.1E-26 T 11-10-2018 IPR000182 GNAT domain VV93_v1c16820 bb52ea8ed2cb673924398191d5d4d843 171 SUPERFAMILY SSF55729 2 150 1.73E-34 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c16820 bb52ea8ed2cb673924398191d5d4d843 171 Gene3D G3DSA:3.40.630.30 2 165 2.0E-36 T 11-10-2018 VV93_v1c41850 e9f8ab4a6132cbb5b0f5a633a6700f4c 251 Pfam PF02754 Cysteine-rich domain 139 223 1.1E-12 T 11-10-2018 IPR004017 Cysteine-rich domain VV93_v1c41850 e9f8ab4a6132cbb5b0f5a633a6700f4c 251 Pfam PF02754 Cysteine-rich domain 11 91 1.7E-11 T 11-10-2018 IPR004017 Cysteine-rich domain VV93_v1c29070 339d3021cc43e9b6ba5a8d4829429c85 104 Pfam PF12305 Protein of unknown function (DUF3630) 8 100 6.3E-38 T 11-10-2018 IPR022080 Protein of unknown function DUF3630 VV93_v1c11870 1d6910491cd6b83fdb3a081d487758d8 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 173 1.2E-15 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD VV93_v1c10560 aa8abe897384cbf76cde90a42e3032b9 141 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 32 134 4.1E-40 T 11-10-2018 IPR039366 YscW/ExsB VV93_v1c02320 dbe609fe86774f12630cc4ca94e6776d 610 Gene3D G3DSA:3.10.105.10 317 543 1.9E-41 T 11-10-2018 VV93_v1c02320 dbe609fe86774f12630cc4ca94e6776d 610 Gene3D G3DSA:3.40.190.10 14 316 6.6E-40 T 11-10-2018 VV93_v1c02320 dbe609fe86774f12630cc4ca94e6776d 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 485 1.7E-57 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain VV93_v1c02320 dbe609fe86774f12630cc4ca94e6776d 610 PIRSF PIRSF002741 1 565 1.5E-63 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 VV93_v1c02320 dbe609fe86774f12630cc4ca94e6776d 610 SUPERFAMILY SSF53850 42 558 3.41E-91 T 11-10-2018 VV93_v1c31710 3b46b718ba24cce137ec0d8951fbddea 251 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 22 245 9.0E-88 T 11-10-2018 IPR023998 Siderophore ferric iron reductase, AHA1954 family VV93_v1c19620 79a38d16788b739ab0811d3f0e62f64d 132 Pfam PF00075 RNase H 16 118 1.1E-14 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 VV93_v1c19620 79a38d16788b739ab0811d3f0e62f64d 132 Gene3D G3DSA:3.30.420.10 9 131 1.5E-22 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 VV93_v1c19620 79a38d16788b739ab0811d3f0e62f64d 132 SUPERFAMILY SSF53098 18 119 8.47E-20 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily VV93_v1c42670 66bc7121b8711b70da2763314dc416d9 343 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 257 7.2E-10 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VV93_v1c42670 66bc7121b8711b70da2763314dc416d9 343 Gene3D G3DSA:1.10.287.470 97 186 6.9E-27 T 11-10-2018 VV93_v1c42670 66bc7121b8711b70da2763314dc416d9 343 Gene3D G3DSA:2.40.50.100 65 216 6.9E-27 T 11-10-2018 VV93_v1c42670 66bc7121b8711b70da2763314dc416d9 343 Gene3D G3DSA:2.40.30.170 218 262 6.9E-27 T 11-10-2018 VV93_v1c42670 66bc7121b8711b70da2763314dc416d9 343 SUPERFAMILY SSF111369 66 216 7.32E-9 T 11-10-2018 VV93_v1c16710 962328b0936a2cf9896a6ef2cdd5a279 140 SUPERFAMILY SSF54593 7 133 1.79E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c16710 962328b0936a2cf9896a6ef2cdd5a279 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 130 4.8E-5 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c16710 962328b0936a2cf9896a6ef2cdd5a279 140 Gene3D G3DSA:3.10.180.10 4 140 1.7E-55 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 PRINTS PR00410 Phenol hydroxylase reductase family signature 325 344 2.8E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 PRINTS PR00410 Phenol hydroxylase reductase family signature 254 266 2.8E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 PRINTS PR00410 Phenol hydroxylase reductase family signature 407 415 2.8E-5 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 Pfam PF08022 FAD-binding domain 229 315 4.2E-9 T 11-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 Gene3D G3DSA:2.40.30.10 219 314 3.2E-15 T 11-10-2018 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 Pfam PF01794 Ferric reductase like transmembrane component 43 179 1.1E-20 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 Pfam PF00175 Oxidoreductase NAD-binding domain 327 419 8.0E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 SUPERFAMILY SSF63380 228 316 1.83E-16 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 Gene3D G3DSA:3.40.50.80 319 443 3.7E-16 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c42420 4ed00b5c56bd5b8324045f56995af83c 443 SUPERFAMILY SSF52343 316 440 1.57E-20 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VV93_v1c07360 4b8e4ab4db1b1211511e1675938a518e 145 Pfam PF04945 YHS domain 39 83 3.8E-11 T 11-10-2018 IPR007029 YHS domain VV93_v1c04880 c9919493b6450c3e91b43853aac44b93 223 Pfam PF14103 Domain of unknown function (DUF4276) 8 218 1.9E-45 T 11-10-2018 IPR025455 Protein of unknown function DUF4276 VV93_v1c21070 87af584844fbfada2b104c242f9f2a14 82 Pfam PF03692 Putative zinc- or iron-chelating domain 3 59 9.5E-6 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein VV93_v1c07500 df5a6380598c1f6e14ba9f1b664b8dc3 147 Pfam PF10980 Protein of unknown function (DUF2787) 15 145 8.8E-52 T 11-10-2018 IPR021248 Protein of unknown function DUF2787 VV93_v1c07500 df5a6380598c1f6e14ba9f1b664b8dc3 147 Gene3D G3DSA:3.10.450.430 1 147 1.2E-62 T 11-10-2018 VV93_v1c22270 427448d4e2380e7a617c708b940ebe23 319 SUPERFAMILY SSF52540 69 262 2.38E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c22270 427448d4e2380e7a617c708b940ebe23 319 Gene3D G3DSA:3.40.50.300 61 282 2.5E-6 T 11-10-2018 VV93_v1c23010 6bc050183bd74d0d95a6f4e70ee9b4b6 77 Pfam PF04400 (Na+)-NQR maturation NqrM 22 63 1.7E-21 T 11-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM VV93_v1c42140 6302f9b61402a0fdb08c541cfa16afd0 112 Pfam PF04320 Protein with unknown function (DUF469) 11 111 9.5E-35 T 11-10-2018 IPR007416 Protein of unknown function DUF469 VV93_v1c10030 d72e99536af7e1765c248a8970c07376 252 SMART SM00563 86 196 3.7E-13 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c10030 d72e99536af7e1765c248a8970c07376 252 SUPERFAMILY SSF69593 50 205 4.58E-24 T 11-10-2018 VV93_v1c10030 d72e99536af7e1765c248a8970c07376 252 Pfam PF01553 Acyltransferase 73 191 3.4E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 VV93_v1c26140 d684f66621ed52731f272c7790c5cbe6 951 SUPERFAMILY SSF56672 407 638 1.58E-15 T 11-10-2018 VV93_v1c26140 d684f66621ed52731f272c7790c5cbe6 951 Pfam PF03175 DNA polymerase type B, organellar and viral 407 574 7.1E-8 T 11-10-2018 IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus GO:0000166|GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 SUPERFAMILY SSF81324 22 235 5.07E-53 T 11-10-2018 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 Pfam PF00520 Ion transport protein 24 235 2.4E-30 T 11-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 120 146 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 178 200 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 58 81 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 207 233 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 84 104 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 149 172 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 PRINTS PR00169 Potassium channel signature 16 44 1.3E-36 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 VV93_v1c10930 07393946ea740aab1ac9191d7e8669ff 286 Gene3D G3DSA:1.10.287.70 23 236 1.3E-58 T 11-10-2018 VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 SUPERFAMILY SSF51182 8 279 3.46E-72 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 PIRSF PIRSF006232 3 281 1.6E-81 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 Pfam PF05726 Pirin C-terminal cupin domain 181 279 6.2E-26 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 Pfam PF02678 Pirin 31 121 7.0E-33 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 Gene3D G3DSA:2.60.120.10 143 249 8.5E-81 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c30560 5b1457bba13df45da399333d8ffb9f5f 281 Gene3D G3DSA:2.60.120.10 18 275 8.5E-81 T 11-10-2018 IPR014710 RmlC-like jelly roll fold VV93_v1c13710 a8db90322493d4ac9d4b9800f5b5530d 456 Pfam PF00939 Sodium:sulfate symporter transmembrane region 17 456 3.9E-56 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c13710 a8db90322493d4ac9d4b9800f5b5530d 456 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 406 422 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 VV93_v1c13710 a8db90322493d4ac9d4b9800f5b5530d 456 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 39 456 1.6E-109 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 VV93_v1c40620 8efb086830758ef312c7ae1a49c0c118 204 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 15 186 7.8E-28 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 VV93_v1c40620 8efb086830758ef312c7ae1a49c0c118 204 Gene3D G3DSA:3.90.850.10 7 203 3.1E-46 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VV93_v1c40620 8efb086830758ef312c7ae1a49c0c118 204 SUPERFAMILY SSF56529 9 188 5.63E-46 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 VV93_v1c18220 0848bed0788eaf3b2327c459f09314f0 200 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 97 187 5.1E-20 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 VV93_v1c18220 0848bed0788eaf3b2327c459f09314f0 200 Gene3D G3DSA:2.60.120.620 1 189 2.3E-52 T 11-10-2018 VV93_v1c18220 0848bed0788eaf3b2327c459f09314f0 200 SMART SM00702 11 187 5.4E-26 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 VV93_v1c43400 581848923c982081d24192bc690436f7 65 Pfam PF04400 (Na+)-NQR maturation NqrM 22 61 3.7E-18 T 11-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM VV93_v1c26550 b85dffe44deb41990245771c4d8f0730 162 PIRSF PIRSF018472 1 162 1.5E-41 T 11-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type VV93_v1c26550 b85dffe44deb41990245771c4d8f0730 162 Pfam PF04093 rod shape-determining protein MreD 9 154 1.1E-39 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VV93_v1c26550 b85dffe44deb41990245771c4d8f0730 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 154 9.5E-38 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 VV93_v1c40610 a13af23e651f54fc57539d3da20259d1 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 2 99 9.6E-25 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD VV93_v1c05270 7ae06b7aeb21abcf4797e73a9b38bb1b 196 Gene3D G3DSA:3.40.50.1820 8 196 3.6E-62 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c05270 7ae06b7aeb21abcf4797e73a9b38bb1b 196 Pfam PF05728 Uncharacterised protein family (UPF0227) 9 194 5.1E-70 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VV93_v1c05270 7ae06b7aeb21abcf4797e73a9b38bb1b 196 SUPERFAMILY SSF53474 5 194 5.22E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold VV93_v1c29800 3a18077caf83a9474063bc9ef919555f 129 Pfam PF03899 ATP synthase I chain 16 111 2.6E-16 T 11-10-2018 IPR005598 ATP synthase protein I VV93_v1c38890 c31546fdbbf02e1080af15ef849d105f 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 303 1.8E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 VV93_v1c38890 c31546fdbbf02e1080af15ef849d105f 322 Gene3D G3DSA:1.10.3720.10 105 307 4.5E-20 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c38890 c31546fdbbf02e1080af15ef849d105f 322 SUPERFAMILY SSF161098 106 304 3.66E-24 T 11-10-2018 IPR035906 MetI-like superfamily VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 Gene3D G3DSA:3.30.300.310 458 559 7.4E-30 T 11-10-2018 VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 11-10-2018 IPR020845 AMP-binding, conserved site VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 SUPERFAMILY SSF56801 14 553 1.07E-150 T 11-10-2018 VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 Gene3D G3DSA:3.40.50.12780 9 457 2.3E-117 T 11-10-2018 VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 1.1E-17 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain VV93_v1c09760 e35e3cdfdb061f7b27d2ce7fd4bc2178 565 Pfam PF00501 AMP-binding enzyme 29 461 3.2E-108 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 VV93_v1c19010 9346231326f35c4d4d8e2378fb91aab9 66 Pfam PF14056 Domain of unknown function (DUF4250) 10 61 1.9E-18 T 11-10-2018 IPR025346 Protein of unknown function DUF4250 VV93_v1c43050 8df908fec657776435b860d102d7ee29 211 Pfam PF12408 Ribose-5-phosphate isomerase 163 209 7.2E-23 T 11-10-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal VV93_v1c43050 8df908fec657776435b860d102d7ee29 211 SUPERFAMILY SSF89623 1 160 6.8E-35 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 VV93_v1c43050 8df908fec657776435b860d102d7ee29 211 Pfam PF02502 Ribose/Galactose Isomerase 3 136 6.6E-28 T 11-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 VV93_v1c43050 8df908fec657776435b860d102d7ee29 211 Gene3D G3DSA:3.40.1400.10 1 211 4.7E-100 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 VV93_v1c29600 5b4856af8619eb8ee9ea0ce008993832 318 PIRSF PIRSF028696 1 318 2.7E-126 T 11-10-2018 IPR016896 Protein of unknown function DUF2860 VV93_v1c29600 5b4856af8619eb8ee9ea0ce008993832 318 Pfam PF11059 Protein of unknown function (DUF2860) 26 317 3.5E-111 T 11-10-2018 IPR016896 Protein of unknown function DUF2860 VV93_v1c14930 240dcc9f0e479be2aa5ab80fb8f2ddbd 368 Pfam PF00534 Glycosyl transferases group 1 188 332 2.6E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c14930 240dcc9f0e479be2aa5ab80fb8f2ddbd 368 Pfam PF13439 Glycosyltransferase Family 4 20 177 2.2E-15 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c14930 240dcc9f0e479be2aa5ab80fb8f2ddbd 368 Gene3D G3DSA:3.40.50.2000 36 362 3.2E-60 T 11-10-2018 VV93_v1c14930 240dcc9f0e479be2aa5ab80fb8f2ddbd 368 Gene3D G3DSA:3.40.50.2000 174 350 3.2E-60 T 11-10-2018 VV93_v1c14930 240dcc9f0e479be2aa5ab80fb8f2ddbd 368 SUPERFAMILY SSF53756 9 362 7.46E-70 T 11-10-2018 VV93_v1c24120 a2df08f09b4c229ababc1d90e3d2e37d 337 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VV93_v1c24120 a2df08f09b4c229ababc1d90e3d2e37d 337 Pfam PF01136 Peptidase family U32 75 336 1.2E-69 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 VV93_v1c38620 23d1772df3d5c72c18b20b343a7f589f 455 PIRSF PIRSF037714 3 452 6.1E-159 T 11-10-2018 IPR017270 Putative MotA/TolQ/ExbB family protein VV93_v1c38620 23d1772df3d5c72c18b20b343a7f589f 455 Pfam PF01618 MotA/TolQ/ExbB proton channel family 322 426 1.1E-28 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel VV93_v1c30480 d54e44d999b4885c3a9d734f1999d63e 478 Pfam PF03600 Citrate transporter 46 421 9.5E-53 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 VV93_v1c33780 92ab02bf48a84b5ac70d3607056ddee5 346 SUPERFAMILY SSF53756 7 342 1.77E-68 T 11-10-2018 VV93_v1c33780 92ab02bf48a84b5ac70d3607056ddee5 346 Gene3D G3DSA:3.40.50.2000 155 326 1.3E-58 T 11-10-2018 VV93_v1c33780 92ab02bf48a84b5ac70d3607056ddee5 346 Gene3D G3DSA:3.40.50.2000 14 335 1.3E-58 T 11-10-2018 VV93_v1c33780 92ab02bf48a84b5ac70d3607056ddee5 346 Pfam PF13439 Glycosyltransferase Family 4 26 158 2.0E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 VV93_v1c33780 92ab02bf48a84b5ac70d3607056ddee5 346 Pfam PF00534 Glycosyl transferases group 1 173 319 4.1E-35 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 VV93_v1c41550 215c5786a734097d73a26395a855ea02 149 SUPERFAMILY SSF53850 28 138 2.35E-6 T 11-10-2018 VV93_v1c41550 215c5786a734097d73a26395a855ea02 149 Gene3D G3DSA:3.40.190.10 28 148 4.5E-6 T 11-10-2018 VV93_v1c44710 7d03c9aed2b0fa74a2b77f9ee49903a1 364 Gene3D G3DSA:3.20.20.70 1 364 2.6E-139 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 VV93_v1c44710 7d03c9aed2b0fa74a2b77f9ee49903a1 364 SUPERFAMILY SSF51395 1 362 3.36E-124 T 11-10-2018 VV93_v1c44710 7d03c9aed2b0fa74a2b77f9ee49903a1 364 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 340 4.2E-98 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 VV93_v1c41770 873be3d4d6b66edf18f3a6b06d192eee 412 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 397 1.7E-63 T 11-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c41770 873be3d4d6b66edf18f3a6b06d192eee 412 Gene3D G3DSA:1.10.4160.10 3 409 3.9E-47 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily VV93_v1c34010 29366972f49acbf8a76ce4cb296e24b8 199 Gene3D G3DSA:3.80.10.10 20 196 1.4E-6 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily VV93_v1c16690 d1921ce07b794ecf00de6aea15a98d65 106 Pfam PF13642 protein structure with unknown function 4 102 1.9E-31 T 11-10-2018 IPR025284 Protein of unknown function DUF4144 VV93_v1c16690 d1921ce07b794ecf00de6aea15a98d65 106 Gene3D G3DSA:2.40.10.320 1 60 4.1E-7 T 11-10-2018 VV93_v1c16130 79af83eec0e251b2550175af91a3de5a 268 Pfam PF04116 Fatty acid hydroxylase superfamily 93 229 5.8E-25 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 VV93_v1c16160 1be2bc65d65fc681396e7d672b209bed 114 Pfam PF12290 Protein of unknown function (DUF3802) 2 110 7.4E-42 T 11-10-2018 IPR020979 Uncharacterised protein family A0KLC6 VV93_v1c21920 a6211bb39447c2041f940dc1542880cf 142 Gene3D G3DSA:3.30.160.170 38 139 4.7E-14 T 11-10-2018 IPR035924 FlaG-like superfamily VV93_v1c21920 a6211bb39447c2041f940dc1542880cf 142 Pfam PF03646 FlaG protein 40 141 1.4E-24 T 11-10-2018 IPR005186 FlaG protein VV93_v1c21920 a6211bb39447c2041f940dc1542880cf 142 SUPERFAMILY SSF160214 44 141 8.5E-23 T 11-10-2018 IPR035924 FlaG-like superfamily VV93_v1c14300 a787ed03dbf439467b0dc2cc1d6b86d3 513 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 444 3.3E-140 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane VV93_v1c22210 7b8bff485fe6da0cdfb51f2262aee5c1 124 Pfam PF09722 Protein of unknown function (DUF2384) 72 121 6.4E-10 T 11-10-2018 IPR024467 Domain of unknown function DUF2384 VV93_v1c21040 f2a43610d67993f90798cbfdcc87ee44 131 SUPERFAMILY SSF54593 2 127 1.88E-28 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c21040 f2a43610d67993f90798cbfdcc87ee44 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 123 1.1E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VV93_v1c21040 f2a43610d67993f90798cbfdcc87ee44 131 Gene3D G3DSA:3.10.180.10 1 129 2.9E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c34720 17083a109ba257f01f98ee3d5402b096 174 SUPERFAMILY SSF52058 1 139 8.5E-14 T 11-10-2018 VV93_v1c34720 17083a109ba257f01f98ee3d5402b096 174 Gene3D G3DSA:3.80.10.10 1 171 4.1E-24 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily VV93_v1c30000 3b496ae04bb5166be127935b6a1ed842 71 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 63 9.9E-18 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 VV93_v1c30000 3b496ae04bb5166be127935b6a1ed842 71 Gene3D G3DSA:1.10.260.40 1 69 1.2E-8 T 11-10-2018 VV93_v1c30000 3b496ae04bb5166be127935b6a1ed842 71 SUPERFAMILY SSF47413 1 67 1.58E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 VV93_v1c35230 3b5f911e13304be15e00b2af77983427 337 Pfam PF10974 Protein of unknown function (DUF2804) 15 335 5.8E-88 T 11-10-2018 IPR021243 Protein of unknown function DUF2804 VV93_v1c38650 f85a43dc0475953f239ba07a4c25fd3d 143 Pfam PF13778 Domain of unknown function (DUF4174) 21 133 1.8E-26 T 11-10-2018 IPR025232 Domain of unknown function DUF4174 VV93_v1c01290 f6e7e6ed57b8a9dec405753530cfe534 68 SUPERFAMILY SSF56349 12 65 2.5E-7 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c34850 f6e7e6ed57b8a9dec405753530cfe534 68 SUPERFAMILY SSF56349 12 65 2.5E-7 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c45560 3da0fec0c7e95717deed255468345d25 114 Pfam PF05534 HicB family 55 99 7.4E-14 T 11-10-2018 IPR008651 Uncharacterised protein family HicB VV93_v1c16070 db4ace52047a26e26e709dde0cd07cc1 239 SUPERFAMILY SSF52540 5 217 1.98E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c16070 db4ace52047a26e26e709dde0cd07cc1 239 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 VV93_v1c16070 db4ace52047a26e26e709dde0cd07cc1 239 Pfam PF00005 ABC transporter 25 165 9.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c16070 db4ace52047a26e26e709dde0cd07cc1 239 SMART SM00382 29 213 1.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c16070 db4ace52047a26e26e709dde0cd07cc1 239 Gene3D G3DSA:3.40.50.300 4 235 5.1E-53 T 11-10-2018 VV93_v1c23720 502da40a5205b5005d05e2aee45e9633 405 SUPERFAMILY SSF52540 155 391 2.31E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c23720 502da40a5205b5005d05e2aee45e9633 405 Gene3D G3DSA:3.40.50.300 154 390 1.3E-42 T 11-10-2018 VV93_v1c23720 502da40a5205b5005d05e2aee45e9633 405 Pfam PF13614 AAA domain 156 311 2.3E-6 T 11-10-2018 IPR025669 AAA domain VV93_v1c33610 84324406f96b69f2ecc981c15764d0f7 543 Pfam PF13584 Oxygen tolerance 15 467 1.1E-79 T 11-10-2018 IPR025738 Aerotolerance-related protein BatD VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 Gene3D G3DSA:3.40.1050.10 1 221 1.9E-85 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 SMART SM00947 30 192 2.2E-63 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 Pfam PF00484 Carbonic anhydrase 38 188 1.4E-48 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 VV93_v1c24800 98c3458647a3ab4bf260dcb6231b1548 222 SUPERFAMILY SSF53056 2 212 2.49E-73 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 VV93_v1c21800 4fc41088834a753363657d90fa8c5533 143 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 3 142 3.6E-34 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VV93_v1c21800 4fc41088834a753363657d90fa8c5533 143 Pfam PF02050 Flagellar FliJ protein 18 140 3.7E-30 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 VV93_v1c22870 2ce3cd581d746e3823b56014aa356883 528 Pfam PF03806 AbgT putative transporter family 19 526 4.2E-229 T 11-10-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 VV93_v1c37490 6d4c5a8fcfe1212d3e0772364de92224 78 Pfam PF11869 Protein of unknown function (DUF3389) 1 76 1.4E-35 T 11-10-2018 IPR021811 Protein of unknown function DUF3389 VV93_v1c15370 0dbd24de69ed51ed5c83374201c03560 103 Pfam PF12321 Protein of unknown function (DUF3634) 2 100 6.4E-40 T 11-10-2018 IPR022090 Protein of unknown function DUF3634 VV93_v1c10870 e6213b29869c97131aa3e9f798c717c2 312 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 305 9.0E-95 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VV93_v1c10870 e6213b29869c97131aa3e9f798c717c2 312 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 1 311 43.635 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VV93_v1c23230 3d7bf81ce6f4ddd6bf1a0ab0106d0b7e 269 Gene3D G3DSA:3.40.50.720 5 269 2.6E-110 T 11-10-2018 VV93_v1c23230 3d7bf81ce6f4ddd6bf1a0ab0106d0b7e 269 SUPERFAMILY SSF69572 9 267 1.02E-65 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 VV93_v1c23230 3d7bf81ce6f4ddd6bf1a0ab0106d0b7e 269 Pfam PF00899 ThiF family 23 263 6.2E-38 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 VV93_v1c35690 044392ae99a2ebb5b51dc4644880a742 145 Pfam PF06127 Protein of unknown function (DUF962) 1 141 1.8E-22 T 11-10-2018 IPR009305 Protein of unknown function DUF962 VV93_v1c23850 8e6b6553f84471d10252509b074bb220 67 Pfam PF06568 Domain of unknown function (DUF1127) 26 58 1.1E-9 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 VV93_v1c02060 1b811e46b8f49c1c2bc9cefc4879230a 253 Pfam PF01203 Type II secretion system (T2SS), protein N 37 247 8.4E-58 T 11-10-2018 IPR022792 Type II secretion system, protein N VV93_v1c11880 b658fe154a73a65e99ee7e8e4dbeb2ca 56 Pfam PF01783 Ribosomal L32p protein family 2 56 3.2E-19 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c11880 b658fe154a73a65e99ee7e8e4dbeb2ca 56 SUPERFAMILY SSF57829 2 55 1.1E-17 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 VV93_v1c11880 b658fe154a73a65e99ee7e8e4dbeb2ca 56 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 2.7E-19 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c11880 b658fe154a73a65e99ee7e8e4dbeb2ca 56 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.665 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 VV93_v1c02960 4164a234d26be39d8e0371c19806cc1e 358 Pfam PF05050 Methyltransferase FkbM domain 192 320 5.7E-7 T 11-10-2018 IPR006342 Methyltransferase FkbM VV93_v1c02960 4164a234d26be39d8e0371c19806cc1e 358 SUPERFAMILY SSF53335 51 357 1.44E-56 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c02960 4164a234d26be39d8e0371c19806cc1e 358 Gene3D G3DSA:3.40.50.150 173 358 2.4E-40 T 11-10-2018 VV93_v1c02960 4164a234d26be39d8e0371c19806cc1e 358 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 189 318 6.6E-18 T 11-10-2018 IPR006342 Methyltransferase FkbM VV93_v1c06020 4b42292ddf2aa3cd5d257aacd646c6bf 437 Pfam PF05525 Branched-chain amino acid transport protein 8 426 3.2E-153 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VV93_v1c06020 4b42292ddf2aa3cd5d257aacd646c6bf 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 413 1.1E-137 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 VV93_v1c04990 08d1a84d5b7bebd7c0fb7621879de321 214 Pfam PF11726 Inovirus Gp2 35 209 1.7E-39 T 11-10-2018 VV93_v1c10960 95d959b6108946238ba8ac996c8e4915 227 Gene3D G3DSA:3.40.50.720 1 226 3.0E-24 T 11-10-2018 VV93_v1c10960 95d959b6108946238ba8ac996c8e4915 227 Pfam PF00106 short chain dehydrogenase 8 186 1.5E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR VV93_v1c10960 95d959b6108946238ba8ac996c8e4915 227 SUPERFAMILY SSF51735 1 207 4.03E-24 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily VV93_v1c33740 70258703e08239c4df82addbac0542fe 130 Pfam PF04892 VanZ like family 37 118 2.3E-8 T 11-10-2018 IPR006976 VanZ-like VV93_v1c02100 788406b34b5adb6790b7b4a4b198c9be 236 Pfam PF00156 Phosphoribosyl transferase domain 138 234 1.6E-10 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 VV93_v1c02100 788406b34b5adb6790b7b4a4b198c9be 236 Gene3D G3DSA:3.40.50.2020 130 236 3.6E-17 T 11-10-2018 VV93_v1c02100 788406b34b5adb6790b7b4a4b198c9be 236 SUPERFAMILY SSF53271 53 235 3.02E-38 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like VV93_v1c12180 854b4319ba2245be50916f078978f392 88 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 86 19.208 T 11-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 VV93_v1c12180 854b4319ba2245be50916f078978f392 88 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 85 3.5E-18 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 VV93_v1c13620 345c30c3c8302fef9e26e6ea039c199f 420 Pfam PF06097 Bacterial protein of unknown function (DUF945) 5 410 4.0E-37 T 11-10-2018 IPR010352 Protein of unknown function DUF945 VV93_v1c26070 7d95f949944955a88e7be5ba8f2f11a1 101 SUPERFAMILY SSF52794 1 101 9.68E-36 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 VV93_v1c26070 7d95f949944955a88e7be5ba8f2f11a1 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 95 4.7E-24 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 VV93_v1c26070 7d95f949944955a88e7be5ba8f2f11a1 101 Gene3D G3DSA:3.40.50.2300 2 101 2.8E-38 T 11-10-2018 VV93_v1c39590 d762d703ef3a7b7db182da3788fc04d1 326 Gene3D G3DSA:3.40.50.2300 71 298 1.2E-10 T 11-10-2018 VV93_v1c39590 d762d703ef3a7b7db182da3788fc04d1 326 Gene3D G3DSA:3.40.50.2300 139 267 1.2E-10 T 11-10-2018 VV93_v1c34370 38b2708de08df4bc09f7dfbbdfddd09b 203 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 21 196 3.6E-31 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like VV93_v1c34370 38b2708de08df4bc09f7dfbbdfddd09b 203 SUPERFAMILY SSF51197 13 200 1.65E-68 T 11-10-2018 VV93_v1c34370 38b2708de08df4bc09f7dfbbdfddd09b 203 Gene3D G3DSA:2.60.120.590 14 202 1.2E-69 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily VV93_v1c22040 8b981aa99a22b281e9f3763bb72523f3 68 Pfam PF11446 Protein of unknown function (DUF2897) 5 57 5.8E-22 T 11-10-2018 IPR021550 Protein of unknown function DUF2897 VV93_v1c17440 275b4c84f44873dcd46f760483e68181 190 Gene3D G3DSA:3.40.50.880 1 190 6.7E-62 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c17440 275b4c84f44873dcd46f760483e68181 190 Pfam PF01965 DJ-1/PfpI family 3 169 1.0E-21 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 VV93_v1c17440 275b4c84f44873dcd46f760483e68181 190 SUPERFAMILY SSF52317 1 188 6.54E-49 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like VV93_v1c44310 a3033788bdea6c435fd495549d8188bf 202 Pfam PF06055 Exopolysaccharide synthesis, ExoD 23 193 1.4E-50 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD VV93_v1c44310 a3033788bdea6c435fd495549d8188bf 202 PIRSF PIRSF033239 11 202 1.2E-59 T 11-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD VV93_v1c28440 4c21ad341e219e0c840ed66979cc4066 207 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 202 4.8E-41 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c28440 4c21ad341e219e0c840ed66979cc4066 207 Pfam PF01914 MarC family integral membrane protein 3 204 6.6E-45 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 VV93_v1c41280 d715255dd4c2c6a85bdbaa62f58156e8 168 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 149 3.4E-25 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ VV93_v1c17510 02531546c89742f535904ecc001789c4 136 SUPERFAMILY SSF53850 17 133 3.8E-13 T 11-10-2018 VV93_v1c17510 02531546c89742f535904ecc001789c4 136 Gene3D G3DSA:3.40.190.10 19 135 1.0E-10 T 11-10-2018 VV93_v1c11280 20722c5056ff4872258b744a97097058 130 PIRSF PIRSF007010 1 130 5.4E-56 T 11-10-2018 IPR016502 Type II secretion system (T2SS) pilotin, S protein VV93_v1c11280 20722c5056ff4872258b744a97097058 130 Pfam PF16549 Type II secretion system (T2SS) pilotin, S protein 15 128 1.8E-48 T 11-10-2018 IPR016502 Type II secretion system (T2SS) pilotin, S protein VV93_v1c11280 20722c5056ff4872258b744a97097058 130 Gene3D G3DSA:3.30.300.250 19 129 1.0E-39 T 11-10-2018 VV93_v1c30020 268db3d886ec8be11a60505837fc98c2 557 Pfam PF06048 Domain of unknown function (DUF927) 22 277 2.6E-63 T 11-10-2018 IPR009270 Domain of unknown function DUF927 VV93_v1c37950 61c75146a6d836f3765a7a31bdcebd0f 116 Pfam PF06950 Protein of unknown function (DUF1293) 14 108 2.0E-19 T 11-10-2018 IPR009712 Vibrio phage Vf33, Vpf117 VV93_v1c07910 d62ffa85d62448cf545aa366c3724326 179 Pfam PF11810 Domain of unknown function (DUF3332) 5 175 1.9E-43 T 11-10-2018 IPR021768 Protein of unknown function DUF3332 VV93_v1c33930 a17a7dd712860f0ff48ce979102ce854 387 Gene3D G3DSA:3.30.70.270 216 384 9.0E-54 T 11-10-2018 VV93_v1c33930 a17a7dd712860f0ff48ce979102ce854 387 SUPERFAMILY SSF55073 230 383 4.94E-48 T 11-10-2018 IPR029787 Nucleotide cyclase VV93_v1c33930 a17a7dd712860f0ff48ce979102ce854 387 Pfam PF00990 Diguanylate cyclase, GGDEF domain 226 380 1.5E-44 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33930 a17a7dd712860f0ff48ce979102ce854 387 SMART SM00267 214 384 3.8E-56 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33930 a17a7dd712860f0ff48ce979102ce854 387 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 224 381 6.4E-51 T 11-10-2018 IPR000160 GGDEF domain VV93_v1c33530 7ea28f03da890bd5d29d0b387e2532a9 186 Pfam PF07603 Protein of unknown function (DUF1566) 42 183 1.2E-21 T 11-10-2018 IPR011460 Protein of unknown function DUF1566 VV93_v1c14150 6112ab0c0771d07185da0ccb144a88a9 235 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 8 232 6.5E-36 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 VV93_v1c14150 6112ab0c0771d07185da0ccb144a88a9 235 SUPERFAMILY SSF51695 3 234 2.51E-64 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VV93_v1c14150 6112ab0c0771d07185da0ccb144a88a9 235 Gene3D G3DSA:3.20.20.190 1 235 2.2E-68 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 VV93_v1c19260 45367bf038b5934c347d3d204de5ff34 176 Pfam PF06042 Nucleotidyltransferase 21 174 6.0E-58 T 11-10-2018 IPR009267 Putative nucleotidyltransferase VV93_v1c09600 27085369eeea873b39ea238be46dfa70 261 Pfam PF00005 ABC transporter 20 148 1.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 VV93_v1c09600 27085369eeea873b39ea238be46dfa70 261 Gene3D G3DSA:3.40.50.300 1 240 2.2E-57 T 11-10-2018 VV93_v1c09600 27085369eeea873b39ea238be46dfa70 261 SMART SM00382 29 198 1.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain VV93_v1c09600 27085369eeea873b39ea238be46dfa70 261 SUPERFAMILY SSF52540 3 216 1.22E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c34360 b6ae3d8601bd7b5eb3680a6f8024c801 365 Pfam PF12060 Domain of unknown function (DUF3541) 30 252 8.3E-117 T 11-10-2018 IPR021928 Protein of unknown function DUF3541 VV93_v1c15050 fae7506ddef6c4d651bcfd8fcec923c0 230 SUPERFAMILY SSF52540 23 202 2.08E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c15050 fae7506ddef6c4d651bcfd8fcec923c0 230 Gene3D G3DSA:3.40.50.300 4 197 1.9E-20 T 11-10-2018 VV93_v1c08840 532efe95a5ed9d12632404154348643b 108 SUPERFAMILY SSF101498 3 99 7.19E-20 T 11-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily VV93_v1c08840 532efe95a5ed9d12632404154348643b 108 Pfam PF04316 Anti-sigma-28 factor, FlgM 43 96 5.5E-19 T 11-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal VV93_v1c08840 532efe95a5ed9d12632404154348643b 108 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 3 99 1.5E-25 T 11-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 VV93_v1c04180 6a0a6703d5e7520505fe5becdd0c16a1 164 Pfam PF03968 OstA-like protein 30 141 2.7E-31 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal VV93_v1c04180 6a0a6703d5e7520505fe5becdd0c16a1 164 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 20 160 1.0E-46 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VV93_v1c04180 6a0a6703d5e7520505fe5becdd0c16a1 164 Gene3D G3DSA:2.60.450.10 20 157 1.4E-41 T 11-10-2018 VV93_v1c04180 6a0a6703d5e7520505fe5becdd0c16a1 164 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 160 24.741 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 VV93_v1c40280 d2c361098ae40cf95b2802e0a9b08015 723 SUPERFAMILY SSF53300 470 650 9.93E-9 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c40280 d2c361098ae40cf95b2802e0a9b08015 723 Gene3D G3DSA:3.40.50.410 467 655 2.4E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c09740 2d37c7bd034b4856f69973da1c5bd257 184 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 6 154 6.4E-39 T 11-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VV93_v1c09740 2d37c7bd034b4856f69973da1c5bd257 184 Pfam PF03843 Outer membrane lipoprotein Slp family 17 163 1.3E-47 T 11-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VV93_v1c09740 2d37c7bd034b4856f69973da1c5bd257 184 PIRSF PIRSF004982 2 184 1.2E-60 T 11-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 VV93_v1c17900 db8e42106e2d88154ae91d620efa1552 179 Pfam PF13302 Acetyltransferase (GNAT) domain 7 146 1.5E-16 T 11-10-2018 IPR000182 GNAT domain VV93_v1c17900 db8e42106e2d88154ae91d620efa1552 179 SUPERFAMILY SSF55729 3 158 1.45E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase VV93_v1c17900 db8e42106e2d88154ae91d620efa1552 179 Gene3D G3DSA:3.40.630.30 1 168 8.9E-26 T 11-10-2018 VV93_v1c29300 052502620c9aa73a4f5d840418eafc71 114 Pfam PF13358 DDE superfamily endonuclease 7 82 2.1E-7 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain VV93_v1c21110 518860a694969547e8f14384a7a988c0 333 PIRSF PIRSF028696 1 333 9.9E-139 T 11-10-2018 IPR016896 Protein of unknown function DUF2860 VV93_v1c21110 518860a694969547e8f14384a7a988c0 333 Pfam PF11059 Protein of unknown function (DUF2860) 33 332 1.7E-106 T 11-10-2018 IPR016896 Protein of unknown function DUF2860 VV93_v1c19330 fce39280228432004504b1be79e5537a 443 Pfam PF07804 HipA-like C-terminal domain 174 416 2.7E-45 T 11-10-2018 IPR012893 HipA-like, C-terminal VV93_v1c19330 fce39280228432004504b1be79e5537a 443 Pfam PF13657 HipA N-terminal domain 8 117 1.0E-21 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 VV93_v1c34300 89e99fbed10fde9926cbbfc7e43cb189 211 SUPERFAMILY SSF103473 10 197 1.23E-7 T 11-10-2018 IPR036259 MFS transporter superfamily VV93_v1c22240 8c4c3d41273c74fb885e158664ca57e0 145 Pfam PF14015 Protein of unknown function (DUF4231) 10 108 2.8E-14 T 11-10-2018 IPR025325 Protein of unknown function DUF4231 VV93_v1c20450 4e8e3c48f997313c1e739c7f6d7bc15c 906 Pfam PF17291 N-terminal domain of M60-like peptidases 449 536 8.7E-6 T 11-10-2018 IPR035423 M60-like domain, N-terminal VV93_v1c20450 4e8e3c48f997313c1e739c7f6d7bc15c 906 SMART SM01276 452 776 7.6E-40 T 11-10-2018 IPR031161 Peptidase family M60 domain VV93_v1c40970 8c1df6d7935561c466f804205e6d35e7 135 Pfam PF12614 Ribosome recycling factor 9 133 1.8E-54 T 11-10-2018 IPR022253 Ribosome recycling factor. bacterial VV93_v1c23800 1f3599e5f98a91b09328bb05bb613dbd 172 Pfam PF01478 Type IV leader peptidase family 7 111 6.1E-11 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 VV93_v1c32770 d150db3cde12b32c395430eb1ff5b1fa 146 Gene3D G3DSA:3.30.530.20 1 146 1.9E-20 T 11-10-2018 IPR023393 START-like domain superfamily VV93_v1c32770 d150db3cde12b32c395430eb1ff5b1fa 146 SUPERFAMILY SSF55961 2 145 4.88E-22 T 11-10-2018 VV93_v1c32770 d150db3cde12b32c395430eb1ff5b1fa 146 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 143 2.2E-8 T 11-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like VV93_v1c10180 11738307448c89785c757498efa7d7d2 221 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 181 4.4E-32 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ VV93_v1c29950 06b7c526145056ed607a809999f6d99a 380 Pfam PF13289 SIR2-like domain 172 325 9.5E-13 T 11-10-2018 IPR039444 SIR2-like domain VV93_v1c38530 4fdaff5a4b225b935a729d1fc264619e 461 PIRSF PIRSF006603 4 459 1.5E-61 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c38530 4fdaff5a4b225b935a729d1fc264619e 461 TIGRFAM TIGR00797 matE: MATE efflux family protein 28 426 6.5E-55 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c38530 4fdaff5a4b225b935a729d1fc264619e 461 Pfam PF01554 MatE 28 188 7.5E-26 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c38530 4fdaff5a4b225b935a729d1fc264619e 461 Pfam PF01554 MatE 252 414 3.1E-19 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 VV93_v1c12950 1cc110fef979200b5b6b26caefecb4fb 129 Pfam PF11042 Protein of unknown function (DUF2750) 23 122 6.7E-35 T 11-10-2018 IPR021284 Protein of unknown function DUF2750 VV93_v1c07350 49e1c2c4a709a5219f0fc524f18f1de1 251 Pfam PF05742 Transport and Golgi organisation 2 1 120 1.7E-8 T 11-10-2018 IPR008551 Transport and Golgi organisation protein 2 VV93_v1c29140 d5288a1aa4178f75531a87f21cfc276c 86 Pfam PF10048 Predicted integral membrane protein (DUF2282) 33 82 4.7E-22 T 11-10-2018 IPR018740 Protein of unknown function DUF2282, integral membrane VV93_v1c37550 3ce189abc12d0d2a723a5c931dd33353 198 Pfam PF09997 Predicted membrane protein (DUF2238) 39 176 5.4E-53 T 11-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 VV93_v1c37550 3ce189abc12d0d2a723a5c931dd33353 198 PIRSF PIRSF020606 1 198 6.5E-84 T 11-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 VV93_v1c30450 e12f5752ca8645e0434bdb36551d6dfc 202 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 11 187 7.8E-33 T 11-10-2018 IPR003740 Uncharacterised membrane protein YitT VV93_v1c26120 e56b3224a06432487ab8a80fb10bd3a1 199 SUPERFAMILY SSF56925 33 199 6.28E-12 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c26120 e56b3224a06432487ab8a80fb10bd3a1 199 Gene3D G3DSA:2.40.160.20 29 199 1.5E-12 T 11-10-2018 VV93_v1c26120 e56b3224a06432487ab8a80fb10bd3a1 199 Pfam PF13505 Outer membrane protein beta-barrel domain 29 199 8.1E-15 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c03960 11e2141e1466beeb1db7574e3e4583ed 1251 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 915 1250 8.0E-62 T 11-10-2018 IPR007452 Translocation and assembly module TamB VV93_v1c06340 d19c9a27c57e20661c113d32b53ed580 113 Pfam PF10973 Protein of unknown function (DUF2799) 28 108 4.2E-23 T 11-10-2018 IPR021242 Protein of unknown function DUF2799 VV93_v1c30220 2425d4cd7511e674c87ab31a19199d63 81 Pfam PF11391 Protein of unknown function (DUF2798) 13 70 3.7E-18 T 11-10-2018 IPR021529 Protein of unknown function DUF2798 VV93_v1c12910 94c40dee2a47f65754af46e399d9cc31 304 Gene3D G3DSA:3.40.50.300 2 297 3.0E-29 T 11-10-2018 VV93_v1c12910 94c40dee2a47f65754af46e399d9cc31 304 SUPERFAMILY SSF52540 11 274 2.47E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase VV93_v1c12910 94c40dee2a47f65754af46e399d9cc31 304 Pfam PF13469 Sulfotransferase family 14 262 1.8E-14 T 11-10-2018 VV93_v1c30850 819f469358679c479ff9e88adfaf56af 333 Pfam PF15575 Immunity protein 49 108 307 4.6E-7 T 11-10-2018 IPR029074 Immunity protein 49 VV93_v1c39290 c3f0e6e44392cc9692ddd46ef4914ca5 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 23 493 1.2E-203 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VV93_v1c39290 c3f0e6e44392cc9692ddd46ef4914ca5 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 64 493 5.8E-187 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath VV93_v1c45390 2feb5fda0a8338c37e2bc38c96b2382c 557 Pfam PF03961 Flagellar Assembly Protein A 80 544 6.6E-125 T 11-10-2018 IPR005646 Flagellar assembly protein A VV93_v1c21990 248f7dd7fe4149ad97899aba67211995 110 Pfam PF13698 Domain of unknown function (DUF4156) 28 109 1.3E-22 T 11-10-2018 IPR025294 Protein of unknown function DUF4156 VV93_v1c37870 7bb656c3c7ff58637cb974ad6817259d 364 Pfam PF02486 Replication initiation factor 166 327 1.9E-17 T 11-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 VV93_v1c15480 7bb656c3c7ff58637cb974ad6817259d 364 Pfam PF02486 Replication initiation factor 166 327 1.9E-17 T 11-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 VV93_v1c44400 d11db3534016da56a8fa6da95a2cd0ce 161 PIRSF PIRSF028065 2 161 1.0E-69 T 11-10-2018 IPR016865 Inner membrane protein RclC VV93_v1c44400 d11db3534016da56a8fa6da95a2cd0ce 161 Pfam PF04224 Protein of unknown function, DUF417 17 156 1.9E-26 T 11-10-2018 IPR007339 Inner membrane protein RclC-like VV93_v1c14870 b85af8e5d8fa6c17ca2e29d96477bd44 126 SUPERFAMILY SSF54593 1 125 1.34E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c14870 b85af8e5d8fa6c17ca2e29d96477bd44 126 Gene3D G3DSA:3.10.180.10 1 126 1.5E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VV93_v1c12500 71619d72bd132a028809de11698aa735 255 Pfam PF07103 Protein of unknown function (DUF1365) 7 243 6.0E-68 T 11-10-2018 IPR010775 Protein of unknown function DUF1365 VV93_v1c08340 4530c97d350915a013bcdbde1886d6ea 199 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 11 187 2.9E-35 T 11-10-2018 IPR003740 Uncharacterised membrane protein YitT VV93_v1c36160 2ec32544425649b8e665863097a247be 151 Gene3D G3DSA:3.90.79.10 5 137 1.2E-23 T 11-10-2018 VV93_v1c36160 2ec32544425649b8e665863097a247be 151 SUPERFAMILY SSF55811 7 136 2.71E-24 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 VV93_v1c36160 2ec32544425649b8e665863097a247be 151 Pfam PF00293 NUDIX domain 12 126 6.8E-19 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 VV93_v1c23320 5fabc326298c743ea546cb8d8a9b64d5 325 Pfam PF03595 Voltage-dependent anion channel 19 306 1.6E-30 T 11-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 VV93_v1c23320 5fabc326298c743ea546cb8d8a9b64d5 325 Gene3D G3DSA:1.50.10.150 5 315 2.1E-45 T 11-10-2018 IPR038665 Voltage-dependent anion channel superfamily VV93_v1c36350 895cf9c2cbe29f7b2652af0c3f05fb67 784 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 102 783 1.4E-299 T 11-10-2018 IPR010706 Fatty acid cis-trans isomerase VV93_v1c05990 8171fd0b267cf94a448698c43f6d7836 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.717 T 11-10-2018 IPR005583 Peroxide stress protein YaaA VV93_v1c05990 8171fd0b267cf94a448698c43f6d7836 258 Pfam PF03883 Peroxide stress protein YaaA 1 243 9.8E-94 T 11-10-2018 IPR005583 Peroxide stress protein YaaA VV93_v1c27850 f1bfa9bf3f2f0702a8fe2ae3f53f407f 363 SUPERFAMILY SSF56935 39 351 9.3E-16 T 11-10-2018 VV93_v1c30370 12656394b5a3b6ab45a1a7df36b1d1f1 83 Pfam PF11280 Protein of unknown function (DUF3081) 5 79 5.5E-29 T 11-10-2018 IPR021432 Protein of unknown function DUF3081 VV93_v1c04500 202cf917f9b47ea4db8f7305d9625be3 260 Pfam PF04784 Protein of unknown function, DUF547 88 198 3.7E-23 T 11-10-2018 IPR006869 Domain of unknown function DUF547 VV93_v1c41960 5a86c0c458810b3af4e48807f4c8f72a 960 SUPERFAMILY SSF53649 379 654 2.07E-11 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 VV93_v1c41960 5a86c0c458810b3af4e48807f4c8f72a 960 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 381 648 6.2E-13 T 11-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 VV93_v1c28270 40566c3f81bcfc8af1dc9e5ea87363c6 164 PRINTS PR01837 MgtC/SapB protein signature 41 59 1.7E-30 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c28270 40566c3f81bcfc8af1dc9e5ea87363c6 164 PRINTS PR01837 MgtC/SapB protein signature 22 41 1.7E-30 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c28270 40566c3f81bcfc8af1dc9e5ea87363c6 164 PRINTS PR01837 MgtC/SapB protein signature 68 90 1.7E-30 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c28270 40566c3f81bcfc8af1dc9e5ea87363c6 164 PRINTS PR01837 MgtC/SapB protein signature 95 119 1.7E-30 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c28270 40566c3f81bcfc8af1dc9e5ea87363c6 164 Pfam PF02308 MgtC family 19 141 6.4E-29 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 VV93_v1c08810 de69bb3e83ffbe228f1e3a3338fd66ad 211 PIRSF PIRSF028688 1 211 2.3E-124 T 11-10-2018 IPR014549 Flagellar protein FlgO VV93_v1c28160 046ce69f6fd065fd170dff133e6f8222 317 SUPERFAMILY SSF64182 5 316 2.51E-40 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily VV93_v1c20400 38f0b5ee280e38a552af7e60a429274c 260 Pfam PF01925 Sulfite exporter TauE/SafE 12 251 2.2E-45 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c18480 21a516b04c8d735eb7e9ab40e31fb062 417 Pfam PF03222 Tryptophan/tyrosine permease family 28 413 9.1E-18 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 VV93_v1c38420 ed1ea31a35f1dfa4ff41d483d3e16757 152 Pfam PF04143 Sulphur transport 43 137 1.9E-6 T 11-10-2018 IPR007272 Sulphur transport domain VV93_v1c39210 c05867bb0746efdaf659da86e91b0b7a 96 Gene3D G3DSA:2.60.200.60 54 95 2.4E-12 T 11-10-2018 VV93_v1c39210 c05867bb0746efdaf659da86e91b0b7a 96 Gene3D G3DSA:2.60.200.60 1 53 3.8E-10 T 11-10-2018 VV93_v1c39210 c05867bb0746efdaf659da86e91b0b7a 96 Pfam PF05488 PAAR motif 18 85 3.9E-25 T 11-10-2018 IPR008727 PAAR motif VV93_v1c38150 bfce64f9f3325f7a2573f712b9a5d06d 293 Pfam PF11060 Protein of unknown function (DUF2861) 23 289 6.1E-96 T 11-10-2018 IPR021290 Protein of unknown function DUF2861 VV93_v1c16390 784b8e6b3158b46757f86ef5b766a1e0 212 Pfam PF11665 Protein of unknown function (DUF3265) 24 51 4.6E-11 T 11-10-2018 IPR021681 Protein of unknown function DUF3265 VV93_v1c14890 caf8f415bcc1b57126b02523d73b6196 67 Pfam PF06945 Protein of unknown function (DUF1289) 8 53 1.4E-16 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 VV93_v1c08720 d5c133ce735174792dc50e55b0a1cbb7 286 Pfam PF01963 TraB family 23 275 4.7E-61 T 11-10-2018 IPR002816 Pheromone shutdown, TraB VV93_v1c07330 b8bc7d309718a1194a2a0c4080d6284e 375 SUPERFAMILY SSF56059 120 310 5.77E-8 T 11-10-2018 VV93_v1c07930 816d851ac4f31aeca5f11de72f8cbaee 429 Pfam PF00860 Permease family 17 391 8.8E-56 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c07930 816d851ac4f31aeca5f11de72f8cbaee 429 PIRSF PIRSF005353 1 429 1.7E-190 T 11-10-2018 IPR026033 Purine permease PbuG-like VV93_v1c20740 99e7284034dbbf1a9fa09160c50bd014 255 Pfam PF10972 Peptidoglycan-binding protein, CsiV 6 254 8.0E-71 T 11-10-2018 IPR021241 Peptidoglycan-binding protein, CsiV VV93_v1c19300 93fbefdef7db7b06bb468efad5453281 123 Pfam PF13453 Transcription factor zinc-finger 2 39 1.3E-10 T 11-10-2018 IPR027392 Transcription factor zinc-finger VV93_v1c36060 b4c63f37ac7f4152045126c347a71ea9 426 SUPERFAMILY SSF53300 148 316 2.36E-18 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c36060 b4c63f37ac7f4152045126c347a71ea9 426 Gene3D G3DSA:3.40.50.410 147 412 6.6E-16 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily VV93_v1c36060 b4c63f37ac7f4152045126c347a71ea9 426 SMART SM00327 150 418 2.8E-5 T 11-10-2018 IPR002035 von Willebrand factor, type A VV93_v1c29530 63511ed8edfba63e0c9425be8fb59cf5 264 Pfam PF07070 SpoOM protein 4 220 3.6E-77 T 11-10-2018 IPR009776 Sporulation stage 0, protein M VV93_v1c22090 3a4d83a98f16ada80f13d1947bf8c5f2 467 Gene3D G3DSA:1.10.443.10 235 457 3.3E-25 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 VV93_v1c22090 3a4d83a98f16ada80f13d1947bf8c5f2 467 SUPERFAMILY SSF56349 161 447 7.06E-24 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 VV93_v1c22090 3a4d83a98f16ada80f13d1947bf8c5f2 467 Pfam PF00589 Phage integrase family 251 443 2.2E-15 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 VV93_v1c44350 8af52a4edfc9008078d6d6f908ccce10 82 Pfam PF11730 Protein of unknown function (DUF3297) 11 81 1.5E-36 T 11-10-2018 IPR021724 Protein of unknown function DUF3297 VV93_v1c20510 f2bcb527f11689ab2187163e828ffd0f 515 Pfam PF11840 Protein of unknown function (DUF3360) 11 515 2.5E-269 T 11-10-2018 IPR021794 Protein of unknown function DUF3360 VV93_v1c21980 0f655650aede3d18ca1c378d53a856cb 118 Pfam PF11169 Protein of unknown function (DUF2956) 9 115 2.4E-43 T 11-10-2018 IPR021339 Protein of unknown function DUF2956 VV93_v1c39740 ec1e0d51344d214e3f604809d72689b9 131 Pfam PF02794 RTX toxin acyltransferase family 1 128 6.5E-45 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 VV93_v1c35080 fec44744a0d14b61bb4a8dffec38e507 364 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 354 7.5E-67 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VV93_v1c01520 fec44744a0d14b61bb4a8dffec38e507 364 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 354 7.5E-67 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 VV93_v1c35950 60e880b6bd77c6efceef2201fb8625e3 96 Pfam PF04964 Flp/Fap pilin component 24 69 3.3E-11 T 11-10-2018 IPR007047 Flp/Fap pilin component VV93_v1c27260 25709df957bb100a2bc85003a0092c4e 90 Pfam PF12292 Protein of unknown function (DUF3624) 1 79 6.5E-36 T 11-10-2018 IPR022072 Protein of unknown function DUF3624 VV93_v1c20560 aedb01a01ea1a4deb0c8e5e984a5d5da 221 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 34 205 5.3E-7 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 VV93_v1c09230 28bbec59836f842c154f8dc0af3e1c64 172 ProDom PD016359 TRANSMEMBRANE TOXS REGULATORY MEMBRANE PERIPLASMIC 1 172 8.0E-87 T 11-10-2018 IPR035288 Trans-membrane regulatory protein ToxS GO:0016021 VV93_v1c09230 28bbec59836f842c154f8dc0af3e1c64 172 Pfam PF17323 Trans-membrane regulatory protein ToxS 21 170 6.6E-71 T 11-10-2018 IPR035288 Trans-membrane regulatory protein ToxS GO:0016021 VV93_v1c36050 5af1ea07b5945a1186d4ceb33380e343 193 Pfam PF16964 Putative tight adherence pilin protein F 2 171 6.5E-28 T 11-10-2018 IPR031582 Putative tight adherence pilin protein F VV93_v1c06210 4b40bb6ebe1d21adc51fa43ad39fcc1a 382 Pfam PF02690 Na+/Pi-cotransporter 218 326 8.0E-19 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VV93_v1c06210 4b40bb6ebe1d21adc51fa43ad39fcc1a 382 Pfam PF02690 Na+/Pi-cotransporter 30 150 1.6E-20 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 VV93_v1c03140 21d5ed1dd7a41298475047f358fbba74 749 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 51 743 3.1E-267 T 11-10-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH VV93_v1c07170 171e21654729fbae6786093a299d152e 294 SUPERFAMILY SSF55186 122 272 1.14E-11 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 VV93_v1c25340 478f0552433cb41da7593d5df4978e75 135 SUPERFAMILY SSF53850 11 123 2.63E-8 T 11-10-2018 VV93_v1c44160 e642582527fab172d603f57763cba770 294 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 38 294 5.2E-90 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 VV93_v1c35470 c32d76790d55b67916b9997ac9dc1628 122 Pfam PF07238 PilZ domain 7 104 3.6E-8 T 11-10-2018 IPR009875 PilZ domain GO:0035438 VV93_v1c34470 7aba20eba35bf176849bbb29fb0204b5 104 SUPERFAMILY SSF54909 4 69 1.7E-8 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel VV93_v1c13290 2f0b58b3e53f05f864f22b5548e180f2 437 Pfam PF07394 Protein of unknown function (DUF1501) 33 418 3.1E-71 T 11-10-2018 IPR010869 Protein of unknown function DUF1501 VV93_v1c06170 0d65caba76dfa452a44901dd49f2dc2a 263 Pfam PF01925 Sulfite exporter TauE/SafE 10 261 1.4E-50 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c33320 c8081c7e9232bce248d2194a8ffc4512 279 Pfam PF02361 Cobalt transport protein 17 235 7.1E-32 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component VV93_v1c28640 ac587cf833895ec2d6a017060dd8257b 230 Pfam PF07356 Protein of unknown function (DUF1481) 32 225 5.1E-59 T 11-10-2018 IPR010858 Protein of unknown function DUF1481 VV93_v1c28640 ac587cf833895ec2d6a017060dd8257b 230 PIRSF PIRSF028160 1 230 2.1E-122 T 11-10-2018 IPR016872 Uncharacterised conserved protein UCP028160 VV93_v1c40500 321a23867ae56f92e901946d2f6adf35 258 Pfam PF02104 SURF1 family 22 230 6.9E-22 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 VV93_v1c18940 84692b215bb599c68232063e7e318123 310 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 270 1.2E-25 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 VV93_v1c05760 0017ac24f87a7f911d26a796e8265c9f 119 PIRSF PIRSF026426 1 119 9.0E-47 T 11-10-2018 IPR010865 Protein of unknown function DUF1499 VV93_v1c05760 0017ac24f87a7f911d26a796e8265c9f 119 Pfam PF07386 Protein of unknown function (DUF1499) 7 110 2.6E-23 T 11-10-2018 IPR010865 Protein of unknown function DUF1499 VV93_v1c43120 994d017883ad93e83025f91edbde8528 484 Pfam PF11840 Protein of unknown function (DUF3360) 3 484 7.4E-253 T 11-10-2018 IPR021794 Protein of unknown function DUF3360 VV93_v1c38030 cf90b013007137dfc2027e1d9fdc45f1 184 SUPERFAMILY SSF56399 4 65 2.81E-7 T 11-10-2018 VV93_v1c03730 67c4a14e77f8364ca998ce135a94cfbc 164 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 44 160 2.0E-23 T 11-10-2018 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE VV93_v1c12540 d2984bcbfb3ba2c276de346b220b618f 177 Pfam PF12915 Protein of unknown function (DUF3833) 17 176 4.6E-66 T 11-10-2018 IPR024409 Protein of unknown function DUF3833 VV93_v1c17580 a29830b728c0f96301fd9d32a3cb25c5 165 Gene3D G3DSA:2.40.160.20 18 165 1.8E-23 T 11-10-2018 VV93_v1c17580 a29830b728c0f96301fd9d32a3cb25c5 165 Pfam PF13505 Outer membrane protein beta-barrel domain 5 164 1.9E-13 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel VV93_v1c17580 a29830b728c0f96301fd9d32a3cb25c5 165 SUPERFAMILY SSF56925 17 164 6.54E-22 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VV93_v1c12620 adbfe73ec12ee4e5f4ee9abfd7a043b7 533 Pfam PF03553 Na+/H+ antiporter family 165 497 8.9E-106 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 VV93_v1c01630 0a8a6fe0f9acdfb78f4f8adb9add9eae 528 Pfam PF02646 RmuC family 182 477 6.9E-105 T 11-10-2018 IPR003798 DNA recombination RmuC VV93_v1c12520 b532923de94ef82d3aeea55ad7d1bbd3 171 Pfam PF11086 Protein of unknown function (DUF2878) 4 149 2.4E-32 T 11-10-2018 IPR021306 Protein of unknown function DUF2878 VV93_v1c21240 6e3309bc8108ab57b4ce0c69b1836979 163 Pfam PF02674 Colicin V production protein 4 142 6.7E-36 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 VV93_v1c00960 06f5819a3738cbc46e8d2a126e5333f7 206 Pfam PF07947 YhhN family 26 204 2.8E-34 T 11-10-2018 IPR012506 YhhN-like GO:0016021 VV93_v1c00110 99a4b609d6667a73b2103e17346cea0a 184 Pfam PF01169 Uncharacterized protein family UPF0016 7 80 2.5E-20 T 11-10-2018 IPR001727 Gdt1 family VV93_v1c00110 99a4b609d6667a73b2103e17346cea0a 184 Pfam PF01169 Uncharacterized protein family UPF0016 103 178 3.4E-19 T 11-10-2018 IPR001727 Gdt1 family VV93_v1c45550 675db0b488b922a027a80cd71bb4d584 89 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 25 76 3.5E-10 T 11-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 VV93_v1c11600 41fe9935ebc77e5aa91acf01aadbbb43 302 Pfam PF13084 Domain of unknown function (DUF3943) 139 248 1.8E-37 T 11-10-2018 IPR025079 Domain of unknown function DUF3943 VV93_v1c27060 39625f3b01631820ecd3aecac65ccc29 403 Gene3D G3DSA:2.40.160.50 129 400 2.2E-15 T 11-10-2018 VV93_v1c27060 39625f3b01631820ecd3aecac65ccc29 403 Pfam PF01103 Surface antigen 133 376 3.0E-10 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 VV93_v1c13670 d2cf5f38d4e6a9455b537f1d65a21a1b 218 Pfam PF10014 2OG-Fe dioxygenase 24 208 1.3E-53 T 11-10-2018 IPR018724 2OG-Fe dioxygenase VV93_v1c13670 d2cf5f38d4e6a9455b537f1d65a21a1b 218 Gene3D G3DSA:2.60.120.620 1 215 1.9E-52 T 11-10-2018 VV93_v1c12330 52bbed5b2200d9861f6d66b6f0acc9d9 400 Pfam PF13679 Methyltransferase domain 117 230 3.8E-18 T 11-10-2018 IPR025714 Methyltransferase domain VV93_v1c12330 52bbed5b2200d9861f6d66b6f0acc9d9 400 SUPERFAMILY SSF53335 114 192 2.98E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VV93_v1c30500 15fd6974d9e5b17515df2f29843ec892 339 Pfam PF01757 Acyltransferase family 6 325 2.5E-25 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 VV93_v1c20190 2189dfa501854efd58f7588ea4b09376 225 Pfam PF09335 SNARE associated Golgi protein 66 181 3.5E-23 T 11-10-2018 IPR032816 SNARE associated Golgi protein VV93_v1c14310 b4e3f8e2251f6be2fb79bb0ff5fa8844 171 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 26 162 2.3E-18 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 VV93_v1c17660 cafdedec4e43156b434955115a17b761 293 Pfam PF00482 Type II secretion system (T2SS), protein F 153 281 8.3E-21 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c45360 d8b436caf0ac863216a0d4512a0e328a 159 Pfam PF07308 Protein of unknown function (DUF1456) 85 151 6.7E-22 T 11-10-2018 IPR009921 Domain of unknown function DUF1456 VV93_v1c45360 d8b436caf0ac863216a0d4512a0e328a 159 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 2.1E-21 T 11-10-2018 IPR009921 Domain of unknown function DUF1456 VV93_v1c32930 04552b5c7f27249d33843bfb5416e78f 166 Pfam PF04664 Opioid growth factor receptor (OGFr) conserved region 27 164 3.3E-17 T 11-10-2018 IPR006757 Opioid growth factor receptor (OGFr) conserved domain GO:0016020|GO:0038023 VV93_v1c13690 81dadb10b7b620067e110cffd64a7370 274 Pfam PF10977 Protein of unknown function (DUF2797) 38 270 1.4E-95 T 11-10-2018 IPR021246 Protein of unknown function DUF2797 VV93_v1c29520 bf56c8822b61e7e6b5a89e76dce978c7 214 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 10 211 6.1E-67 T 11-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 VV93_v1c29520 bf56c8822b61e7e6b5a89e76dce978c7 214 Pfam PF03006 Haemolysin-III related 7 204 5.3E-38 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 VV93_v1c29170 0f70fb0418fb76591c6319f3818a8dfc 197 Pfam PF07681 DoxX 24 104 1.2E-17 T 11-10-2018 IPR032808 DoxX family VV93_v1c32960 b7c7dc2287eb7b3a8ad13027bcd5eb64 94 Gene3D G3DSA:1.10.1220.10 2 91 5.3E-6 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 VV93_v1c32960 b7c7dc2287eb7b3a8ad13027bcd5eb64 94 Pfam PF04221 RelB antitoxin 5 44 4.8E-5 T 11-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ VV93_v1c01830 2f37d8cf9c16cee1a5805723ef8cdc89 178 Pfam PF13511 Domain of unknown function (DUF4124) 9 57 2.2E-11 T 11-10-2018 IPR025392 Domain of unknown function DUF4124 VV93_v1c01070 fa1af02b0aadf24d1a5bb4a1ecd22211 136 Pfam PF03748 Flagellar basal body-associated protein FliL 34 136 1.7E-19 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 VV93_v1c30930 3c9bc6bdb01e6b9db08f18a6fae43189 195 Pfam PF01810 LysE type translocator 17 188 2.4E-14 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c40300 46ab8dee18aedbe567a58b58eacb7651 323 Pfam PF03595 Voltage-dependent anion channel 16 308 6.0E-26 T 11-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 VV93_v1c40300 46ab8dee18aedbe567a58b58eacb7651 323 Gene3D G3DSA:1.50.10.150 10 314 1.7E-32 T 11-10-2018 IPR038665 Voltage-dependent anion channel superfamily VV93_v1c42850 b7526fdebf2ca3a5956d02ff6ce5a0e0 155 Pfam PF07670 Nucleoside recognition 31 124 2.0E-6 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c05970 37d962ad50e7f2862ea18c57b7c15b3a 61 Pfam PF12065 Protein of unknown function (DUF3545) 1 60 2.7E-27 T 11-10-2018 IPR021932 Protein of unknown function DUF3545 VV93_v1c18360 95ad599af4f2c2bc234f1f3d7e5419f8 157 Pfam PF11163 Protein of unknown function (DUF2947) 3 154 9.7E-72 T 11-10-2018 IPR021334 Protein of unknown function DUF2947 VV93_v1c20810 4c4f3f43ef2a5569e2e88943b1bda14a 464 SUPERFAMILY SSF48452 120 261 8.18E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c15170 8aa7d198288bc6bbba59722981e1257a 885 Pfam PF02470 MlaD protein 47 138 7.7E-14 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c15170 8aa7d198288bc6bbba59722981e1257a 885 Pfam PF02470 MlaD protein 399 470 3.0E-6 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c15170 8aa7d198288bc6bbba59722981e1257a 885 Pfam PF02470 MlaD protein 283 374 1.1E-6 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c15170 8aa7d198288bc6bbba59722981e1257a 885 Pfam PF02470 MlaD protein 756 832 1.3E-6 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c15170 8aa7d198288bc6bbba59722981e1257a 885 Pfam PF02470 MlaD protein 163 223 1.1E-6 T 11-10-2018 IPR003399 Mce/MlaD VV93_v1c09220 f22954977851232d637ea7071cb24bcd 251 Pfam PF01925 Sulfite exporter TauE/SafE 10 249 9.4E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c05740 d0f15d44ccdca2d72ceb6f2def844bb9 317 Pfam PF03186 CobD/Cbib protein 18 291 6.8E-39 T 11-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 VV93_v1c21360 304adbe5df022749a3ebe909cff4899d 207 Pfam PF03458 UPF0126 domain 5 76 1.0E-18 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 VV93_v1c21360 304adbe5df022749a3ebe909cff4899d 207 Pfam PF03458 UPF0126 domain 92 163 9.6E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 VV93_v1c33650 8fdbc2ccbe3424914de86faccdfcd20f 305 Pfam PF01882 Protein of unknown function DUF58 53 137 1.5E-20 T 11-10-2018 IPR002881 Domain of unknown function DUF58 VV93_v1c37460 14025ece8e9a0f7492c61ea74d9e8e46 342 Pfam PF02163 Peptidase family M50 209 242 4.7E-7 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 VV93_v1c28180 c613880a6c10571d7608cda9bb4d56dc 122 Pfam PF04892 VanZ like family 29 106 1.8E-10 T 11-10-2018 IPR006976 VanZ-like VV93_v1c23700 5e0c455dbd480992f2456bd071305863 321 Pfam PF00482 Type II secretion system (T2SS), protein F 154 279 9.9E-19 T 11-10-2018 IPR018076 Type II secretion system F domain VV93_v1c23700 5e0c455dbd480992f2456bd071305863 321 Gene3D G3DSA:1.20.81.30 145 257 1.3E-6 T 11-10-2018 VV93_v1c41800 8d2eeca52cd5185190f60edcda72786b 166 SUPERFAMILY SSF48452 4 91 5.06E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 VV93_v1c14230 120e720cf1090297d037478a9dc7ef16 252 Pfam PF01925 Sulfite exporter TauE/SafE 6 245 1.0E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 VV93_v1c14980 ee54766e3f8d41bc812059d80bb854fa 486 Pfam PF01943 Polysaccharide biosynthesis protein 12 273 2.8E-12 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 VV93_v1c04400 8b961da458fb9f8c78f1f0f1080af6d1 255 Pfam PF06738 Putative threonine/serine exporter 10 247 2.6E-68 T 11-10-2018 IPR010619 Putative threonine/serine exporter VV93_v1c45350 bf5645e2bbb1a715a5391c22c306cd4c 343 Pfam PF06674 Protein of unknown function (DUF1176) 25 332 2.0E-97 T 11-10-2018 IPR009560 Protein of unknown function DUF1176 VV93_v1c14740 37bf9a8acca06419b705807ba27f91ed 381 Pfam PF12698 ABC-2 family transporter protein 22 367 4.9E-39 T 11-10-2018 VV93_v1c15630 ec70e6a62482c88fcc21847b9d06a67d 57 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 6 45 2.6E-11 T 11-10-2018 IPR008621 Cbb3-type cytochrome oxidase component VV93_v1c17800 c0ff43459d91c378e69dea9a4eb23fc1 434 Pfam PF06629 MltA-interacting protein MipA 43 236 1.3E-20 T 11-10-2018 IPR010583 MltA-interacting MipA VV93_v1c26990 1ae60777fd38ed56fd37b92d9467996a 220 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 9 220 4.4E-50 T 11-10-2018 IPR026387 Outer membrane protein VV93_v1c01910 4ab577a435548bf24a7f2f120ee663ff 646 Pfam PF05170 AsmA family 1 571 2.3E-179 T 11-10-2018 IPR007844 AsmA VV93_v1c29120 cb4d3a6b7ebc2d39ab56c98412232973 223 PIRSF PIRSF006324 1 214 6.1E-51 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c29120 cb4d3a6b7ebc2d39ab56c98412232973 223 Pfam PF01810 LysE type translocator 16 212 1.3E-36 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 VV93_v1c31480 626f47b4b7a0b381b4c95534e400bbe2 332 Pfam PF11168 Protein of unknown function (DUF2955) 9 148 1.1E-35 T 11-10-2018 IPR022604 Protein of unknown function DUF2955 VV93_v1c44530 5b5d851398781bfae369982c0430aa59 551 SUPERFAMILY SSF158682 155 282 3.58E-7 T 11-10-2018 IPR029024 TerB-like VV93_v1c08710 3cd540c6b2c65b6d8280e73ab234bd9d 46 Pfam PF11346 Protein of unknown function (DUF3149) 4 43 3.2E-14 T 11-10-2018 IPR021494 Protein of unknown function DUF3149 VV93_v1c27090 ca54a1b5c53c45f8b354650edd335ebc 253 Pfam PF04338 Protein of unknown function, DUF481 38 253 2.9E-51 T 11-10-2018 IPR007433 Protein of unknown function DUF481 VV93_v1c40310 0158345252b8aa569b3b6d654a19c878 412 Pfam PF01566 Natural resistance-associated macrophage protein 56 379 1.1E-18 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 VV93_v1c36040 b5d4809b0e84978d877b4191fcc1679a 175 Pfam PF07811 TadE-like protein 7 43 3.8E-5 T 11-10-2018 IPR012495 TadE-like VV93_v1c37940 3d34f4c31bb7ce2ae9b67f95fd208ae9 355 Pfam PF02486 Replication initiation factor 155 273 6.1E-16 T 11-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 VV93_v1c34230 6443b46b56c9bb7d51058381ff2a673a 458 Pfam PF07670 Nucleoside recognition 144 238 1.3E-7 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 VV93_v1c16620 4493f7866903a03d3882c14579b516c1 219 SUPERFAMILY SSF56854 93 185 9.87E-5 T 11-10-2018 IPR036834 Blc2-like superfamily GO:0042981 VV93_v1c12930 78b6f37e83fe181040bc24756c770664 404 Pfam PF11449 Putative, 10TM heavy-metal exporter 41 402 1.0E-163 T 11-10-2018 IPR021552 Putative, 10TM heavy-metal exporter VV93_v1c22820 ef675287e397c365e90208e63393779d 345 Pfam PF12069 Protein of unknown function (DUF3549) 3 340 3.6E-138 T 11-10-2018 IPR021936 Protein of unknown function DUF3549 VV93_v1c25700 1658bc31f17c463d79704ce43dc6f5f9 264 Pfam PF09955 Predicted integral membrane protein (DUF2189) 82 195 2.9E-27 T 11-10-2018 IPR018692 Predicted integral membrane protein DUF2189 VV93_v1c15720 a0943a76486d67489a4cfa1b3aa00701 220 Pfam PF11205 Protein of unknown function (DUF2987) 22 166 9.8E-54 T 11-10-2018 IPR021370 Protein of unknown function DUF2987 VV93_v1c28240 37b49aa0f49ed93a96b39f62411c9755 467 Pfam PF01145 SPFH domain / Band 7 family 45 296 6.1E-37 T 11-10-2018 IPR001107 Band 7 domain VV93_v1c07300 d6fcd90a38ac68407f7e28056562afe7 201 Pfam PF09335 SNARE associated Golgi protein 37 157 2.4E-24 T 11-10-2018 IPR032816 SNARE associated Golgi protein VV93_v1c23250 780fa5ad21600dfe54ce996ca1a72375 155 Pfam PF11012 Protein of unknown function (DUF2850) 69 146 2.0E-31 T 11-10-2018 IPR021271 Protein of unknown function DUF2850