AL549_00045 SM00267 diguanylate cyclase AL549_00060 SM00342 helix_turn_helix, arabinose operon control protein AL549_00095 SM00382 ATPases associated with a variety of cellular activities AL549_00150 SM00382 ATPases associated with a variety of cellular activities AL549_00160 SM00421 helix_turn_helix, Lux Regulon AL549_00165 SM00421 helix_turn_helix, Lux Regulon AL549_00175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_00175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00195 SM00327 von Willebrand factor (vWF) type A domain AL549_00200 SM00028 Tetratricopeptide repeats AL549_00200 SM00327 von Willebrand factor (vWF) type A domain AL549_00210 SM00267 diguanylate cyclase AL549_00215 SM00382 ATPases associated with a variety of cellular activities AL549_00235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_00235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_00240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00265 SM00487 DEAD-like helicases superfamily AL549_00265 SM00490 helicase superfamily c-terminal domain AL549_00275 SM00257 Lysin motif AL549_00285 SM00422 helix_turn_helix, mercury resistance AL549_00305 SM00028 Tetratricopeptide repeats AL549_00310 SM00267 diguanylate cyclase AL549_00330 SM00382 ATPases associated with a variety of cellular activities AL549_00345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_00345 SM00245 tail specific protease AL549_00365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_00365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00380 SM01057 Eukaryotic-type carbonic anhydrase AL549_00405 SM00382 ATPases associated with a variety of cellular activities AL549_00420 SM00062 Bacterial periplasmic substrate-binding proteins AL549_00420 SM00387 Histidine kinase-like ATPases AL549_00420 SM00388 His Kinase A (phosphoacceptor) domain AL549_00420 SM00448 cheY-homologous receiver domain AL549_00425 SM00052 Putative diguanylate phosphodiesterase AL549_00425 SM00448 cheY-homologous receiver domain AL549_00430 SM00421 helix_turn_helix, Lux Regulon AL549_00430 SM00448 cheY-homologous receiver domain AL549_00435 SM00267 diguanylate cyclase AL549_00440 SM00421 helix_turn_helix, Lux Regulon AL549_00440 SM00448 cheY-homologous receiver domain AL549_00465 SM00849 Metallo-beta-lactamase superfamily AL549_00530 SM00829 Enoylreductase AL549_00580 SM01060 AL549_00580 AL549_00585 SM00248 ankyrin repeats AL549_00600 SM00481 DNA polymerase alpha chain like domain AL549_00610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_00635 SM00267 diguanylate cyclase AL549_00635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00680 SM00342 helix_turn_helix, arabinose operon control protein AL549_00745 SM00014 Acid phosphatase homologues AL549_00820 SM00448 cheY-homologous receiver domain AL549_00820 SM00862 Transcriptional regulatory protein, C terminal AL549_00825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_00825 SM00387 Histidine kinase-like ATPases AL549_00825 SM00388 His Kinase A (phosphoacceptor) domain AL549_00850 SM00642 Alpha-amylase domain AL549_00860 SM00062 Bacterial periplasmic substrate-binding proteins AL549_00870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_00870 SM00267 diguanylate cyclase AL549_00880 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_00905 SM00421 helix_turn_helix, Lux Regulon AL549_00925 SM00849 Metallo-beta-lactamase superfamily AL549_01010 SM00357 Cold shock protein domain AL549_01070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_01100 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_01125 SM00342 helix_turn_helix, arabinose operon control protein AL549_01140 SM00421 helix_turn_helix, Lux Regulon AL549_01160 SM00849 Metallo-beta-lactamase superfamily AL549_01165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_01165 SM00382 ATPases associated with a variety of cellular activities AL549_01185 SM00342 helix_turn_helix, arabinose operon control protein AL549_01185 SM00871 Bacterial transcription activator, effector binding domain AL549_01225 SM01038 Beta galactosidase small chain AL549_01235 SM00382 ATPases associated with a variety of cellular activities AL549_01245 SM00354 helix_turn _helix lactose operon repressor AL549_01265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_01265 SM00267 diguanylate cyclase AL549_01320 SM01217 AL549_01320 AL549_01325 SM00342 helix_turn_helix, arabinose operon control protein AL549_01345 SM00354 helix_turn _helix lactose operon repressor AL549_01355 SM00382 ATPases associated with a variety of cellular activities AL549_01360 SM00382 ATPases associated with a variety of cellular activities AL549_01385 SM00354 helix_turn _helix lactose operon repressor AL549_01390 SM00382 ATPases associated with a variety of cellular activities AL549_01415 SM00354 helix_turn _helix lactose operon repressor AL549_01435 SM00267 diguanylate cyclase AL549_01440 SM00448 cheY-homologous receiver domain AL549_01440 SM00862 Transcriptional regulatory protein, C terminal AL549_01445 SM00387 Histidine kinase-like ATPases AL549_01445 SM00388 His Kinase A (phosphoacceptor) domain AL549_01475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_01490 SM00052 Putative diguanylate phosphodiesterase AL549_01500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_01500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_01515 SM00495 Chitin-binding domain type 3 AL549_01530 SM00344 helix_turn_helix ASNC type AL549_01540 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_01545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_01545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_01545 SM01358 AL549_01545 AL549_01550 SM00642 Alpha-amylase domain AL549_01565 SM00421 helix_turn_helix, Lux Regulon AL549_01630 SM00671 Sel1-like repeats. AL549_01635 SM00642 Alpha-amylase domain AL549_01660 SM00642 Alpha-amylase domain AL549_01665 SM00267 diguanylate cyclase AL549_01670 SM00267 diguanylate cyclase AL549_01695 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL549_01695 SM00495 Chitin-binding domain type 3 AL549_01695 SM00636 AL549_01695 AL549_01740 SM00342 helix_turn_helix, arabinose operon control protein AL549_01740 SM01009 AlkA N-terminal domain AL549_01765 SM01154 AL549_01765 AL549_01800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_01800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_01800 SM01049 AL549_01800 AL549_01805 SM00448 cheY-homologous receiver domain AL549_01805 SM00850 LytTr DNA-binding domain AL549_01810 SM00387 Histidine kinase-like ATPases AL549_01830 SM00382 ATPases associated with a variety of cellular activities AL549_01860 SM00387 Histidine kinase-like ATPases AL549_01860 SM00388 His Kinase A (phosphoacceptor) domain AL549_01860 SM00448 cheY-homologous receiver domain AL549_01885 SM00382 ATPases associated with a variety of cellular activities AL549_01890 SM00382 ATPases associated with a variety of cellular activities AL549_01910 SM00470 ParB-like nuclease domain AL549_01925 SM00448 cheY-homologous receiver domain AL549_01930 SM00073 Histidine Phosphotransfer domain AL549_01930 SM00260 Two component signalling adaptor domain AL549_01930 SM00387 Histidine kinase-like ATPases AL549_01930 SM01231 AL549_01930 AL549_01935 SM00260 Two component signalling adaptor domain AL549_01940 SM00260 Two component signalling adaptor domain AL549_01945 SM00091 PAS domain AL549_01945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_01945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_01950 SM00138 Methyltransferase, chemotaxis proteins AL549_01960 SM00448 cheY-homologous receiver domain AL549_01965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_01975 SM00331 Sigma factor PP2C-like phosphatases AL549_01975 SM00448 cheY-homologous receiver domain AL549_01985 SM00248 ankyrin repeats AL549_02025 SM00855 Phosphoglycerate mutase family AL549_02030 SM00052 Putative diguanylate phosphodiesterase AL549_02060 SM00028 Tetratricopeptide repeats AL549_02065 SM01266 AL549_02065 AL549_02070 SM00883 Chaperonin 10 Kd subunit AL549_02090 SM00382 ATPases associated with a variety of cellular activities AL549_02095 SM00052 Putative diguanylate phosphodiesterase AL549_02095 SM00267 diguanylate cyclase AL549_02110 SM00448 cheY-homologous receiver domain AL549_02115 SM00387 Histidine kinase-like ATPases AL549_02115 SM00388 His Kinase A (phosphoacceptor) domain AL549_02125 SM00421 helix_turn_helix, Lux Regulon AL549_02130 SM00342 helix_turn_helix, arabinose operon control protein AL549_02150 SM00344 helix_turn_helix ASNC type AL549_02205 SM00382 ATPases associated with a variety of cellular activities AL549_02210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_02210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_02260 SM00382 ATPases associated with a variety of cellular activities AL549_02280 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_02290 SM01007 Class II Aldolase and Adducin N-terminal domain AL549_02305 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_02305 SM01134 AL549_02305 AL549_02375 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_02375 SM00895 AL549_02375 AL549_02385 SM00487 DEAD-like helicases superfamily AL549_02385 SM00490 helicase superfamily c-terminal domain AL549_02400 SM00354 helix_turn _helix lactose operon repressor AL549_02435 SM00342 helix_turn_helix, arabinose operon control protein AL549_02440 SM00829 Enoylreductase AL549_02465 SM00342 helix_turn_helix, arabinose operon control protein AL549_02485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_02515 SM00671 Sel1-like repeats. AL549_02535 SM00849 Metallo-beta-lactamase superfamily AL549_02550 SM00342 helix_turn_helix, arabinose operon control protein AL549_02560 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_02560 SM01134 AL549_02560 AL549_02565 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_02565 SM01134 AL549_02565 AL549_02610 SM00382 ATPases associated with a variety of cellular activities AL549_02620 SM00895 AL549_02620 AL549_02635 SM00382 ATPases associated with a variety of cellular activities AL549_02670 SM00382 ATPases associated with a variety of cellular activities AL549_02675 SM00479 AL549_02675 AL549_02695 SM00267 diguanylate cyclase AL549_02730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_02730 SM00387 Histidine kinase-like ATPases AL549_02730 SM00388 His Kinase A (phosphoacceptor) domain AL549_02735 SM00448 cheY-homologous receiver domain AL549_02735 SM00862 Transcriptional regulatory protein, C terminal AL549_02745 SM00849 Metallo-beta-lactamase superfamily AL549_02755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_02755 SM00387 Histidine kinase-like ATPases AL549_02760 SM00382 ATPases associated with a variety of cellular activities AL549_02760 SM00448 cheY-homologous receiver domain AL549_02785 SM00448 cheY-homologous receiver domain AL549_02785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_02790 SM00073 Histidine Phosphotransfer domain AL549_02790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_02790 SM00091 PAS domain AL549_02790 SM00387 Histidine kinase-like ATPases AL549_02790 SM00388 His Kinase A (phosphoacceptor) domain AL549_02790 SM00448 cheY-homologous receiver domain AL549_02795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_02795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_02850 SM00487 DEAD-like helicases superfamily AL549_02850 SM00490 helicase superfamily c-terminal domain AL549_02915 SM00342 helix_turn_helix, arabinose operon control protein AL549_02975 SM00838 Elongation factor G C-terminus AL549_02975 SM00889 Elongation factor G, domain IV AL549_02985 SM00267 diguanylate cyclase AL549_02985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_03000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_03000 SM00387 Histidine kinase-like ATPases AL549_03005 SM00448 cheY-homologous receiver domain AL549_03005 SM00862 Transcriptional regulatory protein, C terminal AL549_03020 SM00422 helix_turn_helix, mercury resistance AL549_03030 SM00342 helix_turn_helix, arabinose operon control protein AL549_03045 SM00387 Histidine kinase-like ATPases AL549_03045 SM00388 His Kinase A (phosphoacceptor) domain AL549_03045 SM00448 cheY-homologous receiver domain AL549_03105 SM00479 AL549_03105 AL549_03110 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_03115 SM00346 helix_turn_helix isocitrate lyase regulation AL549_03200 SM00642 Alpha-amylase domain AL549_03255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_03290 SM00028 Tetratricopeptide repeats AL549_03295 SM00849 Metallo-beta-lactamase superfamily AL549_03330 SM00421 helix_turn_helix, Lux Regulon AL549_03355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_03355 SM00091 PAS domain AL549_03355 SM00267 diguanylate cyclase AL549_03360 SM00382 ATPases associated with a variety of cellular activities AL549_03375 SM01091 Transporter associated domain AL549_03405 SM00354 helix_turn _helix lactose operon repressor AL549_03425 SM00382 ATPases associated with a variety of cellular activities AL549_03465 SM00849 Metallo-beta-lactamase superfamily AL549_03510 SM00830 Chorismate mutase type II AL549_03550 SM00823 Phosphopantetheine attachment site AL549_03570 SM00062 Bacterial periplasmic substrate-binding proteins AL549_03575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_03575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_03580 SM00062 Bacterial periplasmic substrate-binding proteins AL549_03590 SM00052 Putative diguanylate phosphodiesterase AL549_03595 SM00495 Chitin-binding domain type 3 AL549_03615 SM00062 Bacterial periplasmic substrate-binding proteins AL549_03620 SM00382 ATPases associated with a variety of cellular activities AL549_03640 SM00052 Putative diguanylate phosphodiesterase AL549_03650 SM00849 Metallo-beta-lactamase superfamily AL549_03680 SM00563 Phosphate acyltransferases AL549_03685 SM00327 von Willebrand factor (vWF) type A domain AL549_03685 SM00609 Vault protein Inter-alpha-Trypsin domain AL549_03730 SM00382 ATPases associated with a variety of cellular activities AL549_03755 SM00342 helix_turn_helix, arabinose operon control protein AL549_03755 SM00871 Bacterial transcription activator, effector binding domain AL549_03760 SM00924 MgtE intracellular N domain AL549_03775 SM00342 helix_turn_helix, arabinose operon control protein AL549_03785 SM00448 cheY-homologous receiver domain AL549_03785 SM00862 Transcriptional regulatory protein, C terminal AL549_03790 SM00387 Histidine kinase-like ATPases AL549_03790 SM00388 His Kinase A (phosphoacceptor) domain AL549_03800 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_03820 SM00344 helix_turn_helix ASNC type AL549_03840 SM00788 Adenylosuccinate synthetase AL549_03855 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_03870 SM00387 Histidine kinase-like ATPases AL549_03870 SM00388 His Kinase A (phosphoacceptor) domain AL549_03870 SM00448 cheY-homologous receiver domain AL549_03910 SM00387 Histidine kinase-like ATPases AL549_03910 SM00388 His Kinase A (phosphoacceptor) domain AL549_03910 SM00448 cheY-homologous receiver domain AL549_03925 SM00344 helix_turn_helix ASNC type AL549_03960 SM00822 AL549_03960 AL549_04015 SM01130 AL549_04015 AL549_04045 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_04055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_04055 SM00387 Histidine kinase-like ATPases AL549_04060 SM00421 helix_turn_helix, Lux Regulon AL549_04060 SM00448 cheY-homologous receiver domain AL549_04070 SM00448 cheY-homologous receiver domain AL549_04090 SM01240 AL549_04090 AL549_04180 SM00487 DEAD-like helicases superfamily AL549_04180 SM00490 helicase superfamily c-terminal domain AL549_04195 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_04230 SM00382 ATPases associated with a variety of cellular activities AL549_04245 SM01119 AL549_04245 AL549_04280 SM00052 Putative diguanylate phosphodiesterase AL549_04280 SM00267 diguanylate cyclase AL549_04310 SM00052 Putative diguanylate phosphodiesterase AL549_04310 SM00267 diguanylate cyclase AL549_04335 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_04355 SM00342 helix_turn_helix, arabinose operon control protein AL549_04430 SM00091 PAS domain AL549_04430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_04435 SM00052 Putative diguanylate phosphodiesterase AL549_04435 SM00267 diguanylate cyclase AL549_04435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_04445 SM00861 Transketolase, pyrimidine binding domain AL549_04460 SM00636 AL549_04460 AL549_04465 SM00052 Putative diguanylate phosphodiesterase AL549_04465 SM00267 diguanylate cyclase AL549_04470 SM00450 Rhodanese Homology Domain AL549_04480 SM00852 Probable molybdopterin binding domain AL549_04550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_04550 SM01358 AL549_04550 AL549_04585 SM01322 AL549_04585 AL549_04590 SM00357 Cold shock protein domain AL549_04605 SM00062 Bacterial periplasmic substrate-binding proteins AL549_04605 SM00267 diguanylate cyclase AL549_04625 SM00387 Histidine kinase-like ATPases AL549_04630 SM00421 helix_turn_helix, Lux Regulon AL549_04630 SM00448 cheY-homologous receiver domain AL549_04650 SM00829 Enoylreductase AL549_04670 SM00357 Cold shock protein domain AL549_04705 SM00422 helix_turn_helix, mercury resistance AL549_04740 SM00822 AL549_04740 AL549_04760 SM00382 ATPases associated with a variety of cellular activities AL549_04770 SM00382 ATPases associated with a variety of cellular activities AL549_04790 SM01005 Alanine racemase, C-terminal domain AL549_04795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_04795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_04805 SM00893 Electron transfer flavoprotein domain AL549_04810 SM00893 Electron transfer flavoprotein domain AL549_04820 SM00861 Transketolase, pyrimidine binding domain AL549_04840 SM00448 cheY-homologous receiver domain AL549_04840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_04845 SM00387 Histidine kinase-like ATPases AL549_04895 SM00052 Putative diguanylate phosphodiesterase AL549_04895 SM00267 diguanylate cyclase AL549_04930 SM00220 Serine/Threonine protein kinases, catalytic domain AL549_04935 SM00240 Forkhead associated domain AL549_04965 SM00331 Sigma factor PP2C-like phosphatases AL549_04965 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL549_05010 SM00382 ATPases associated with a variety of cellular activities AL549_05010 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_05135 SM00458 Ricin-type beta-trefoil AL549_05145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05155 SM00642 Alpha-amylase domain AL549_05165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_05185 SM01012 AL549_05185 AL549_05200 SM00382 ATPases associated with a variety of cellular activities AL549_05220 SM00028 Tetratricopeptide repeats AL549_05220 SM00267 diguanylate cyclase AL549_05230 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL549_05240 SM00487 DEAD-like helicases superfamily AL549_05240 SM00490 helicase superfamily c-terminal domain AL549_05255 SM00267 diguanylate cyclase AL549_05255 SM00448 cheY-homologous receiver domain AL549_05265 SM00138 Methyltransferase, chemotaxis proteins AL549_05270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05270 SM00387 Histidine kinase-like ATPases AL549_05270 SM00388 His Kinase A (phosphoacceptor) domain AL549_05270 SM00448 cheY-homologous receiver domain AL549_05295 SM00091 PAS domain AL549_05295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05355 SM00028 Tetratricopeptide repeats AL549_05365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05365 SM01049 AL549_05365 AL549_05385 SM00342 helix_turn_helix, arabinose operon control protein AL549_05415 SM00450 Rhodanese Homology Domain AL549_05425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_05465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05510 SM00382 ATPases associated with a variety of cellular activities AL549_05520 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_05530 SM00267 diguanylate cyclase AL549_05530 SM00448 cheY-homologous receiver domain AL549_05540 SM00267 diguanylate cyclase AL549_05555 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL549_05555 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL549_05565 SM00387 Histidine kinase-like ATPases AL549_05565 SM00388 His Kinase A (phosphoacceptor) domain AL549_05570 SM00448 cheY-homologous receiver domain AL549_05570 SM00862 Transcriptional regulatory protein, C terminal AL549_05610 SM00881 CoA binding domain AL549_05625 SM00091 PAS domain AL549_05625 SM00267 diguanylate cyclase AL549_05625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05640 SM00796 Allophanate hydrolase subunit 1 AL549_05645 SM00797 Allophanate hydrolase subunit 2 AL549_05660 SM00382 ATPases associated with a variety of cellular activities AL549_05675 SM00052 Putative diguanylate phosphodiesterase AL549_05675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_05675 SM00267 diguanylate cyclase AL549_05690 SM00271 DnaJ molecular chaperone homology domain AL549_05715 SM00642 Alpha-amylase domain AL549_05760 SM00782 PhnA Zinc-Ribbon AL549_05810 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_05815 SM00867 YceI-like domain AL549_05830 SM00052 Putative diguanylate phosphodiesterase AL549_05835 SM00487 DEAD-like helicases superfamily AL549_05835 SM00490 helicase superfamily c-terminal domain AL549_05845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_05855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_05885 SM00495 Chitin-binding domain type 3 AL549_05885 SM00636 AL549_05885 AL549_05890 SM00342 helix_turn_helix, arabinose operon control protein AL549_05900 SM00448 cheY-homologous receiver domain AL549_05905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_05905 SM00387 Histidine kinase-like ATPases AL549_05905 SM00388 His Kinase A (phosphoacceptor) domain AL549_05925 SM00052 Putative diguanylate phosphodiesterase AL549_05945 SM00354 helix_turn _helix lactose operon repressor AL549_05990 SM00020 Trypsin-like serine protease AL549_06000 SM00530 Helix-turn-helix XRE-family like proteins AL549_06035 SM00382 ATPases associated with a variety of cellular activities AL549_06095 SM00990 AL549_06095 AL549_06100 SM00028 Tetratricopeptide repeats AL549_06135 SM00327 von Willebrand factor (vWF) type A domain AL549_06180 SM00487 DEAD-like helicases superfamily AL549_06180 SM00490 helicase superfamily c-terminal domain AL549_06185 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_06185 SM00357 Cold shock protein domain AL549_06185 SM00955 AL549_06185 AL549_06190 SM00342 helix_turn_helix, arabinose operon control protein AL549_06205 SM00635 Bacterial Ig-like domain 2 AL549_06210 SM00052 Putative diguanylate phosphodiesterase AL549_06210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_06210 SM00267 diguanylate cyclase AL549_06220 SM00448 cheY-homologous receiver domain AL549_06225 SM00052 Putative diguanylate phosphodiesterase AL549_06225 SM00421 helix_turn_helix, Lux Regulon AL549_06225 SM00448 cheY-homologous receiver domain AL549_06230 SM00062 Bacterial periplasmic substrate-binding proteins AL549_06230 SM00387 Histidine kinase-like ATPases AL549_06230 SM00388 His Kinase A (phosphoacceptor) domain AL549_06230 SM00448 cheY-homologous receiver domain AL549_06235 SM00487 DEAD-like helicases superfamily AL549_06235 SM00490 helicase superfamily c-terminal domain AL549_06285 SM00073 Histidine Phosphotransfer domain AL549_06285 SM00387 Histidine kinase-like ATPases AL549_06285 SM00388 His Kinase A (phosphoacceptor) domain AL549_06285 SM00448 cheY-homologous receiver domain AL549_06295 SM00851 MGS-like domain AL549_06335 SM00422 helix_turn_helix, mercury resistance AL549_06340 SM00382 ATPases associated with a variety of cellular activities AL549_06365 SM01266 AL549_06365 AL549_06370 SM00448 cheY-homologous receiver domain AL549_06375 SM00091 PAS domain AL549_06375 SM00387 Histidine kinase-like ATPases AL549_06420 SM00327 von Willebrand factor (vWF) type A domain AL549_06505 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_06505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_06525 SM00260 Two component signalling adaptor domain AL549_06525 SM00448 cheY-homologous receiver domain AL549_06530 SM00354 helix_turn _helix lactose operon repressor AL549_06550 SM00382 ATPases associated with a variety of cellular activities AL549_06575 SM00327 von Willebrand factor (vWF) type A domain AL549_06580 SM00382 ATPases associated with a variety of cellular activities AL549_06615 SM00014 Acid phosphatase homologues AL549_06620 SM01022 AL549_06620 AL549_06645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_06645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_06720 SM00450 Rhodanese Homology Domain AL549_06805 SM00382 ATPases associated with a variety of cellular activities AL549_06835 SM00028 Tetratricopeptide repeats AL549_06850 SM00936 Penicillin-binding protein 5, C-terminal domain AL549_06900 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_06900 SM00866 AL549_06900 AL549_06910 SM00382 ATPases associated with a variety of cellular activities AL549_06940 SM00342 helix_turn_helix, arabinose operon control protein AL549_06940 SM00871 Bacterial transcription activator, effector binding domain AL549_06955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_06965 SM00342 helix_turn_helix, arabinose operon control protein AL549_06990 SM01266 AL549_06990 AL549_07005 SM00267 diguanylate cyclase AL549_07015 SM00530 Helix-turn-helix XRE-family like proteins AL549_07020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_07020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_07025 SM00267 diguanylate cyclase AL549_07025 SM01079 AL549_07025 AL549_07115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_07115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_07120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_07120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_07125 SM00642 Alpha-amylase domain AL549_07140 SM00260 Two component signalling adaptor domain AL549_07140 SM00448 cheY-homologous receiver domain AL549_07160 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_07190 SM00382 ATPases associated with a variety of cellular activities AL549_07215 SM00880 AL549_07215 AL549_07215 SM01118 AL549_07215 AL549_07225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_07265 SM00387 Histidine kinase-like ATPases AL549_07265 SM00433 TopoisomeraseII AL549_07270 SM00434 DNA Topoisomerase IV AL549_07275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_07280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_07330 SM00749 bacterial OsmY and nodulation domain AL549_07415 SM00842 Cell division protein FtsA AL549_07420 SM00864 Tubulin/FtsZ family, GTPase domain AL549_07420 SM00865 Tubulin/FtsZ family, C-terminal domain AL549_07435 SM00957 SecA DEAD-like domain AL549_07435 SM00958 SecA preprotein cross-linking domain AL549_07450 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL549_07455 SM00851 MGS-like domain AL549_07455 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_07525 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_07530 SM00091 PAS domain AL549_07530 SM00267 diguanylate cyclase AL549_07535 SM00073 Histidine Phosphotransfer domain AL549_07535 SM00091 PAS domain AL549_07535 SM00387 Histidine kinase-like ATPases AL549_07535 SM00388 His Kinase A (phosphoacceptor) domain AL549_07535 SM00448 cheY-homologous receiver domain AL549_07545 SM00448 cheY-homologous receiver domain AL549_07545 SM00862 Transcriptional regulatory protein, C terminal AL549_07585 SM00518 AP endonuclease family 2 AL549_07590 SM00986 Uracil DNA glycosylase superfamily AL549_07590 SM00987 UreE urease accessory protein, C-terminal domain AL549_07615 SM00487 DEAD-like helicases superfamily AL549_07615 SM00490 helicase superfamily c-terminal domain AL549_07660 SM00382 ATPases associated with a variety of cellular activities AL549_07680 SM00927 DNA mismatch repair enzyme MutH AL549_07690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_07710 SM01154 AL549_07710 AL549_07725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_07740 SM00904 Riboflavin kinase AL549_07765 SM00448 cheY-homologous receiver domain AL549_07765 SM00850 LytTr DNA-binding domain AL549_07810 SM00830 Chorismate mutase type II AL549_07825 SM00382 ATPases associated with a variety of cellular activities AL549_07845 SM00830 Chorismate mutase type II AL549_07860 SM00363 S4 RNA-binding domain AL549_07870 SM00382 ATPases associated with a variety of cellular activities AL549_07870 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_07925 SM00448 cheY-homologous receiver domain AL549_07925 SM00862 Transcriptional regulatory protein, C terminal AL549_07930 SM00091 PAS domain AL549_07930 SM00387 Histidine kinase-like ATPases AL549_07930 SM00388 His Kinase A (phosphoacceptor) domain AL549_07960 SM00382 ATPases associated with a variety of cellular activities AL549_08020 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_08025 SM00020 Trypsin-like serine protease AL549_08040 SM01323 AL549_08040 AL549_08095 SM00271 DnaJ molecular chaperone homology domain AL549_08120 SM00562 AL549_08120 AL549_08150 SM00564 beta-propeller repeat AL549_08155 SM00173 Ras subfamily of RAS small GTPases AL549_08155 SM00382 ATPases associated with a variety of cellular activities AL549_08165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_08165 SM00267 diguanylate cyclase AL549_08180 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_08180 SM01240 AL549_08180 AL549_08190 SM00495 Chitin-binding domain type 3 AL549_08260 SM00563 Phosphate acyltransferases AL549_08265 SM00530 Helix-turn-helix XRE-family like proteins AL549_08345 SM00271 DnaJ molecular chaperone homology domain AL549_08385 SM00829 Enoylreductase AL549_08400 SM00062 Bacterial periplasmic substrate-binding proteins AL549_08410 SM01211 AL549_08410 AL549_08460 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL549_08510 SM00861 Transketolase, pyrimidine binding domain AL549_08535 SM00981 AL549_08535 AL549_08560 SM00477 DNA/RNA non-specific endonuclease AL549_08560 SM00892 DNA/RNA non-specific endonuclease AL549_08565 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL549_08565 SM00475 5'-3' exonuclease AL549_08575 SM00267 diguanylate cyclase AL549_08580 SM00028 Tetratricopeptide repeats AL549_08610 SM00382 ATPases associated with a variety of cellular activities AL549_08610 SM00930 AL549_08610 AL549_08620 SM00354 helix_turn _helix lactose operon repressor AL549_08630 SM00642 Alpha-amylase domain AL549_08650 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_08665 SM00936 Penicillin-binding protein 5, C-terminal domain AL549_08720 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_08720 SM01091 Transporter associated domain AL549_08735 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_08830 SM01400 AL549_08830 AL549_08850 SM00937 AL549_08850 AL549_08885 SM00363 S4 RNA-binding domain AL549_08890 SM00463 Small MutS-related domain AL549_08905 SM01081 Putative carbohydrate binding domain AL549_08975 SM00858 AL549_08975 AL549_08980 SM00260 Two component signalling adaptor domain AL549_08980 SM00448 cheY-homologous receiver domain AL549_08985 SM00138 Methyltransferase, chemotaxis proteins AL549_09030 SM00047 Lysozyme subfamily 2 AL549_09090 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL549_09095 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_09095 SM00292 breast cancer carboxy-terminal domain AL549_09095 SM00532 Ligase N family AL549_09110 SM00244 prohibitin homologues AL549_09140 SM00938 Nitrogen regulatory protein P-II AL549_09145 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_09170 SM00862 Transcriptional regulatory protein, C terminal AL549_09175 SM00387 Histidine kinase-like ATPases AL549_09190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_09190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_09190 SM01358 AL549_09190 AL549_09200 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL549_09325 SM00861 Transketolase, pyrimidine binding domain AL549_09340 SM00881 CoA binding domain AL549_09350 SM00382 ATPases associated with a variety of cellular activities AL549_09360 SM00342 helix_turn_helix, arabinose operon control protein AL549_09365 SM00899 AL549_09365 AL549_09385 SM00836 DALR anticodon binding domain AL549_09385 SM01016 Arginyl tRNA synthetase N terminal dom AL549_09405 SM00487 DEAD-like helicases superfamily AL549_09405 SM00491 AL549_09405 AL549_09435 SM00474 3'-5' exonuclease AL549_09480 SM00448 cheY-homologous receiver domain AL549_09480 SM00862 Transcriptional regulatory protein, C terminal AL549_09485 SM00388 His Kinase A (phosphoacceptor) domain AL549_09495 SM00825 Beta-ketoacyl synthase AL549_09510 SM00825 Beta-ketoacyl synthase AL549_09570 SM00563 Phosphate acyltransferases AL549_09605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_09605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_09615 SM00448 cheY-homologous receiver domain AL549_09615 SM00862 Transcriptional regulatory protein, C terminal AL549_09620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_09620 SM00387 Histidine kinase-like ATPases AL549_09640 SM00382 ATPases associated with a variety of cellular activities AL549_09665 SM00382 ATPases associated with a variety of cellular activities AL549_09665 SM00448 cheY-homologous receiver domain AL549_09670 SM00387 Histidine kinase-like ATPases AL549_09670 SM00388 His Kinase A (phosphoacceptor) domain AL549_09685 SM00382 ATPases associated with a variety of cellular activities AL549_09685 SM00994 ClpX C4-type zinc finger AL549_09685 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_09690 SM00382 ATPases associated with a variety of cellular activities AL549_09690 SM00464 Found in ATP-dependent protease La (LON) AL549_09695 SM00411 bacterial (prokaryotic) histone like domain AL549_09715 SM01144 AL549_09715 AL549_09720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_09725 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_09755 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL549_09775 SM00563 Phosphate acyltransferases AL549_09785 SM00978 AL549_09785 AL549_09845 SM00344 helix_turn_helix ASNC type AL549_09875 SM00062 Bacterial periplasmic substrate-binding proteins AL549_09875 SM00267 diguanylate cyclase AL549_09905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_09915 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_09935 SM00870 AL549_09935 AL549_09955 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL549_09955 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL549_09955 SM00493 AL549_09955 AL549_09965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_09965 SM00387 Histidine kinase-like ATPases AL549_09965 SM00388 His Kinase A (phosphoacceptor) domain AL549_09965 SM00448 cheY-homologous receiver domain AL549_09970 SM00267 diguanylate cyclase AL549_09970 SM00448 cheY-homologous receiver domain AL549_09975 SM00155 Phospholipase D. Active site motifs. AL549_10035 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_10090 SM00479 AL549_10090 AL549_10110 SM00478 endonuclease III AL549_10110 SM00525 AL549_10110 AL549_10120 SM00900 AL549_10120 AL549_10150 SM00487 DEAD-like helicases superfamily AL549_10150 SM00490 helicase superfamily c-terminal domain AL549_10155 SM00382 ATPases associated with a variety of cellular activities AL549_10155 SM00448 cheY-homologous receiver domain AL549_10170 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_10175 SM00852 Probable molybdopterin binding domain AL549_10210 SM00382 ATPases associated with a variety of cellular activities AL549_10215 SM00382 ATPases associated with a variety of cellular activities AL549_10290 SM00481 DNA polymerase alpha chain like domain AL549_10305 SM00363 S4 RNA-binding domain AL549_10315 SM00841 Elongation factor P, C-terminal AL549_10315 SM01185 AL549_10315 AL549_10325 SM00052 Putative diguanylate phosphodiesterase AL549_10330 SM00486 DNA polymerase type-B family AL549_10335 SM00421 helix_turn_helix, Lux Regulon AL549_10335 SM00448 cheY-homologous receiver domain AL549_10340 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_10340 SM00465 GIY-YIG type nucleases (URI domain) AL549_10395 SM00852 Probable molybdopterin binding domain AL549_10425 SM00434 DNA Topoisomerase IV AL549_10505 SM00062 Bacterial periplasmic substrate-binding proteins AL549_10515 SM00226 Low molecular weight phosphatase family AL549_10525 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_10530 SM00363 S4 RNA-binding domain AL549_10560 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL549_10565 SM00822 AL549_10565 AL549_10575 SM00825 Beta-ketoacyl synthase AL549_10640 SM00260 Two component signalling adaptor domain AL549_10640 SM00448 cheY-homologous receiver domain AL549_10645 SM00481 DNA polymerase alpha chain like domain AL549_10660 SM00822 AL549_10660 AL549_10675 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_10680 SM00411 bacterial (prokaryotic) histone like domain AL549_10690 SM00028 Tetratricopeptide repeats AL549_10695 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_10715 SM00382 ATPases associated with a variety of cellular activities AL549_10720 SM00382 ATPases associated with a variety of cellular activities AL549_10770 SM00849 Metallo-beta-lactamase superfamily AL549_10810 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL549_10810 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL549_10815 SM00344 helix_turn_helix ASNC type AL549_10820 SM00843 AL549_10820 AL549_10830 SM00382 ATPases associated with a variety of cellular activities AL549_10845 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_10845 SM00876 Biotin and Thiamin Synthesis associated domain AL549_10935 SM00528 Domain in histone-like proteins of HNS family AL549_10990 SM00052 Putative diguanylate phosphodiesterase AL549_11005 SM00840 AL549_11005 AL549_11095 SM01131 AL549_11095 AL549_11110 SM00382 ATPases associated with a variety of cellular activities AL549_11115 SM00382 ATPases associated with a variety of cellular activities AL549_11135 SM00382 ATPases associated with a variety of cellular activities AL549_11180 SM00155 Phospholipase D. Active site motifs. AL549_11190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_11190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_11215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_11215 SM00382 ATPases associated with a variety of cellular activities AL549_11225 SM00382 ATPases associated with a variety of cellular activities AL549_11255 SM00267 diguanylate cyclase AL549_11275 SM00387 Histidine kinase-like ATPases AL549_11280 SM00448 cheY-homologous receiver domain AL549_11280 SM00862 Transcriptional regulatory protein, C terminal AL549_11290 SM00487 DEAD-like helicases superfamily AL549_11290 SM00490 helicase superfamily c-terminal domain AL549_11295 SM00363 S4 RNA-binding domain AL549_11320 SM00382 ATPases associated with a variety of cellular activities AL549_11405 SM00448 cheY-homologous receiver domain AL549_11410 SM00387 Histidine kinase-like ATPases AL549_11425 SM00382 ATPases associated with a variety of cellular activities AL549_11430 SM00382 ATPases associated with a variety of cellular activities AL549_11455 SM00267 diguanylate cyclase AL549_11470 SM00919 Malic enzyme, NAD binding domain AL549_11470 SM01274 AL549_11470 AL549_11475 SM00487 DEAD-like helicases superfamily AL549_11475 SM00490 helicase superfamily c-terminal domain AL549_11475 SM00847 Helicase associated domain (HA2) Add an annotation AL549_11540 SM00855 Phosphoglycerate mutase family AL549_11560 SM00382 ATPases associated with a variety of cellular activities AL549_11605 SM00028 Tetratricopeptide repeats AL549_11645 SM00062 Bacterial periplasmic substrate-binding proteins AL549_11675 SM00267 diguanylate cyclase AL549_11680 SM00357 Cold shock protein domain AL549_11700 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_11700 SM01134 AL549_11700 AL549_11705 SM00382 ATPases associated with a variety of cellular activities AL549_11725 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_11730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_11730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_11740 SM00421 helix_turn_helix, Lux Regulon AL549_11780 SM00487 DEAD-like helicases superfamily AL549_11795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_11795 SM00895 AL549_11795 AL549_11830 SM00020 Trypsin-like serine protease AL549_11830 SM00495 Chitin-binding domain type 3 AL549_11840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_11840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_11860 SM00028 Tetratricopeptide repeats AL549_11860 SM00267 diguanylate cyclase AL549_11880 SM00327 von Willebrand factor (vWF) type A domain AL549_11885 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL549_11890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_11915 SM00382 ATPases associated with a variety of cellular activities AL549_11930 SM00062 Bacterial periplasmic substrate-binding proteins AL549_11950 SM00563 Phosphate acyltransferases AL549_11980 SM00421 helix_turn_helix, Lux Regulon AL549_12010 SM00091 PAS domain AL549_12010 SM00387 Histidine kinase-like ATPases AL549_12015 SM00448 cheY-homologous receiver domain AL549_12030 SM01350 AL549_12030 AL549_12115 SM00382 ATPases associated with a variety of cellular activities AL549_12115 SM00448 cheY-homologous receiver domain AL549_12120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_12120 SM00387 Histidine kinase-like ATPases AL549_12120 SM00388 His Kinase A (phosphoacceptor) domain AL549_12120 SM00448 cheY-homologous receiver domain AL549_12155 SM00028 Tetratricopeptide repeats AL549_12155 SM00267 diguanylate cyclase AL549_12200 SM00382 ATPases associated with a variety of cellular activities AL549_12210 SM00945 ProQ/FINO family AL549_12215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_12215 SM00245 tail specific protease AL549_12245 SM00981 AL549_12245 AL549_12255 SM00382 ATPases associated with a variety of cellular activities AL549_12300 SM00387 Histidine kinase-like ATPases AL549_12300 SM00388 His Kinase A (phosphoacceptor) domain AL549_12300 SM00448 cheY-homologous receiver domain AL549_12305 SM00897 FIST N domain AL549_12305 SM01204 AL549_12305 AL549_12355 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_12355 SM00419 helix_turn_helix, cAMP Regulatory protein AL549_12390 SM00382 ATPases associated with a variety of cellular activities AL549_12460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_12495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_12495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_12500 SM00382 ATPases associated with a variety of cellular activities AL549_12515 SM00387 Histidine kinase-like ATPases AL549_12515 SM00388 His Kinase A (phosphoacceptor) domain AL549_12520 SM00382 ATPases associated with a variety of cellular activities AL549_12520 SM00448 cheY-homologous receiver domain AL549_12535 SM00382 ATPases associated with a variety of cellular activities AL549_12545 SM00852 Probable molybdopterin binding domain AL549_12560 SM01144 AL549_12560 AL549_12570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_12585 SM00267 diguanylate cyclase AL549_12590 SM00448 cheY-homologous receiver domain AL549_12820 SM01040 BRO family, N-terminal domain AL549_13135 SM01022 AL549_13135 AL549_13410 SM00507 HNH nucleases AL549_13465 SM01022 AL549_13465 AL549_13605 SM01022 AL549_13605 AL549_13655 SM01321 AL549_13655 AL549_13875 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL549_13890 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_13890 SM00866 AL549_13890 AL549_13920 SM00020 Trypsin-like serine protease AL549_13950 SM00671 Sel1-like repeats. AL549_13975 SM00954 Region found in RelA / SpoT proteins AL549_13980 SM00411 bacterial (prokaryotic) histone like domain AL549_14000 SM00873 B3/4 domain AL549_14000 SM00874 tRNA synthetase B5 domain AL549_14000 SM00896 Ferredoxin-fold anticodon binding domain AL549_14010 SM00267 diguanylate cyclase AL549_14045 SM00530 Helix-turn-helix XRE-family like proteins AL549_14080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_14080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_14105 SM00448 cheY-homologous receiver domain AL549_14105 SM00850 LytTr DNA-binding domain AL549_14140 SM00382 ATPases associated with a variety of cellular activities AL549_14140 SM00487 DEAD-like helicases superfamily AL549_14140 SM00490 helicase superfamily c-terminal domain AL549_14140 SM00847 Helicase associated domain (HA2) Add an annotation AL549_14145 SM00636 AL549_14145 AL549_14170 SM00028 Tetratricopeptide repeats AL549_14205 SM00858 AL549_14205 AL549_14245 SM00479 AL549_14245 AL549_14250 SM00267 diguanylate cyclase AL549_14250 SM01079 AL549_14250 AL549_14280 SM00342 helix_turn_helix, arabinose operon control protein AL549_14295 SM00267 diguanylate cyclase AL549_14370 SM00382 ATPases associated with a variety of cellular activities AL549_14375 SM00382 ATPases associated with a variety of cellular activities AL549_14410 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL549_14425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_14430 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL549_14455 SM00052 Putative diguanylate phosphodiesterase AL549_14455 SM00267 diguanylate cyclase AL549_14460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_14470 SM00052 Putative diguanylate phosphodiesterase AL549_14470 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_14470 SM00267 diguanylate cyclase AL549_14475 SM00267 diguanylate cyclase AL549_14480 SM00448 cheY-homologous receiver domain AL549_14485 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_14485 SM00387 Histidine kinase-like ATPases AL549_14510 SM00091 PAS domain AL549_14510 SM00382 ATPases associated with a variety of cellular activities AL549_14545 SM00387 Histidine kinase-like ATPases AL549_14545 SM00388 His Kinase A (phosphoacceptor) domain AL549_14545 SM00448 cheY-homologous receiver domain AL549_14570 SM00052 Putative diguanylate phosphodiesterase AL549_14585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_14585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_14600 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_14615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_14630 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_14630 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_14635 SM00479 AL549_14635 AL549_14640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_14640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_14650 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_14655 SM00421 helix_turn_helix, Lux Regulon AL549_14655 SM00448 cheY-homologous receiver domain AL549_14660 SM00387 Histidine kinase-like ATPases AL549_14660 SM01049 AL549_14660 AL549_14695 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_14720 SM00267 diguanylate cyclase AL549_14725 SM00642 Alpha-amylase domain AL549_14730 SM00382 ATPases associated with a variety of cellular activities AL549_14780 SM00052 Putative diguanylate phosphodiesterase AL549_14780 SM00091 PAS domain AL549_14785 SM00052 Putative diguanylate phosphodiesterase AL549_14785 SM00091 PAS domain AL549_14790 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_14795 SM00052 Putative diguanylate phosphodiesterase AL549_14795 SM00267 diguanylate cyclase AL549_14795 SM01049 AL549_14795 AL549_14810 SM00342 helix_turn_helix, arabinose operon control protein AL549_14835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_14875 SM00530 Helix-turn-helix XRE-family like proteins AL549_14890 SM00487 DEAD-like helicases superfamily AL549_14890 SM00490 helicase superfamily c-terminal domain AL549_14905 SM00387 Histidine kinase-like ATPases AL549_14905 SM00388 His Kinase A (phosphoacceptor) domain AL549_14905 SM00448 cheY-homologous receiver domain AL549_14940 SM00028 Tetratricopeptide repeats AL549_14995 SM00382 ATPases associated with a variety of cellular activities AL549_15000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_15005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_15060 SM00342 helix_turn_helix, arabinose operon control protein AL549_15090 SM00448 cheY-homologous receiver domain AL549_15090 SM00862 Transcriptional regulatory protein, C terminal AL549_15100 SM00354 helix_turn _helix lactose operon repressor AL549_15135 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL549_15135 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL549_15135 SM00493 AL549_15135 AL549_15165 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_15170 SM00382 ATPases associated with a variety of cellular activities AL549_15170 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_15180 SM00357 Cold shock protein domain AL549_15205 SM00491 AL549_15205 AL549_15225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_15225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_15235 SM01276 AL549_15235 AL549_15250 SM00062 Bacterial periplasmic substrate-binding proteins AL549_15250 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL549_15255 SM00382 ATPases associated with a variety of cellular activities AL549_15280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_15280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_15300 SM00763 PrkA AAA domain AL549_15315 SM00267 diguanylate cyclase AL549_15335 SM00382 ATPases associated with a variety of cellular activities AL549_15340 SM00849 Metallo-beta-lactamase superfamily AL549_15355 SM00382 ATPases associated with a variety of cellular activities AL549_15370 SM00487 DEAD-like helicases superfamily AL549_15370 SM00490 helicase superfamily c-terminal domain AL549_15370 SM00982 AL549_15370 AL549_15370 SM01058 CarD-like/TRCF domain AL549_15420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_15420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_15440 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_15445 SM00267 diguanylate cyclase AL549_15460 SM00862 Transcriptional regulatory protein, C terminal AL549_15470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_15470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_15480 SM00267 diguanylate cyclase AL549_15585 SM00098 Alkaline phosphatase homologues AL549_15620 SM00448 cheY-homologous receiver domain AL549_15620 SM00862 Transcriptional regulatory protein, C terminal AL549_15625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_15625 SM00387 Histidine kinase-like ATPases AL549_15625 SM00388 His Kinase A (phosphoacceptor) domain AL549_15640 SM00493 AL549_15640 AL549_15650 SM00382 ATPases associated with a variety of cellular activities AL549_15660 SM00448 cheY-homologous receiver domain AL549_15705 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_15715 SM00825 Beta-ketoacyl synthase AL549_15750 SM00463 Small MutS-related domain AL549_15755 SM00855 Phosphoglycerate mutase family AL549_15840 SM00382 ATPases associated with a variety of cellular activities AL549_15850 SM00260 Two component signalling adaptor domain AL549_15855 SM00260 Two component signalling adaptor domain AL549_15865 SM00448 cheY-homologous receiver domain AL549_15870 SM00073 Histidine Phosphotransfer domain AL549_15870 SM00260 Two component signalling adaptor domain AL549_15870 SM00387 Histidine kinase-like ATPases AL549_15870 SM01231 AL549_15870 AL549_15880 SM00448 cheY-homologous receiver domain AL549_15895 SM00382 ATPases associated with a variety of cellular activities AL549_15895 SM00962 SRP54-type protein, GTPase domain AL549_15955 SM00382 ATPases associated with a variety of cellular activities AL549_15980 SM00382 ATPases associated with a variety of cellular activities AL549_15980 SM00448 cheY-homologous receiver domain AL549_15985 SM00387 Histidine kinase-like ATPases AL549_15985 SM00388 His Kinase A (phosphoacceptor) domain AL549_15990 SM00382 ATPases associated with a variety of cellular activities AL549_16085 SM01130 AL549_16085 AL549_16110 SM00028 Tetratricopeptide repeats AL549_16200 SM00479 AL549_16200 AL549_16215 SM00849 Metallo-beta-lactamase superfamily AL549_16220 SM00257 Lysin motif AL549_16235 SM00938 Nitrogen regulatory protein P-II AL549_16245 SM00977 TilS substrate C-terminal domain AL549_16255 SM00481 DNA polymerase alpha chain like domain AL549_16285 SM00935 Outer membrane protein (OmpH-like) AL549_16340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_16400 SM00849 Metallo-beta-lactamase superfamily AL549_16460 SM00495 Chitin-binding domain type 3 AL549_16460 SM00636 AL549_16460 AL549_16470 SM00487 DEAD-like helicases superfamily AL549_16470 SM00490 helicase superfamily c-terminal domain AL549_16480 SM00267 diguanylate cyclase AL549_16480 SM00448 cheY-homologous receiver domain AL549_16510 SM00900 AL549_16510 AL549_16595 SM00925 MltA specific insert domain AL549_16665 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_16665 SM01134 AL549_16665 AL549_16710 SM00354 helix_turn _helix lactose operon repressor AL549_16715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_16715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_16715 SM01049 AL549_16715 AL549_16740 SM00354 helix_turn _helix lactose operon repressor AL549_16750 SM01038 Beta galactosidase small chain AL549_16790 SM00028 Tetratricopeptide repeats AL549_16840 SM00858 AL549_16840 AL549_16865 SM00342 helix_turn_helix, arabinose operon control protein AL549_16880 SM00838 Elongation factor G C-terminus AL549_16880 SM00889 Elongation factor G, domain IV AL549_16895 SM00267 diguanylate cyclase AL549_16900 SM00382 ATPases associated with a variety of cellular activities AL549_16930 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL549_16935 SM01133 AL549_16935 AL549_16955 SM00267 diguanylate cyclase AL549_16960 SM00052 Putative diguanylate phosphodiesterase AL549_16960 SM00267 diguanylate cyclase AL549_16985 SM00052 Putative diguanylate phosphodiesterase AL549_16985 SM00091 PAS domain AL549_16985 SM00267 diguanylate cyclase AL549_17005 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_17010 SM00028 Tetratricopeptide repeats AL549_17015 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_17015 SM00322 K homology RNA-binding domain AL549_17040 SM01387 AL549_17040 AL549_17060 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_17095 SM00382 ATPases associated with a variety of cellular activities AL549_17105 SM01103 AL549_17105 AL549_17175 SM00091 PAS domain AL549_17175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_17175 SM00387 Histidine kinase-like ATPases AL549_17175 SM00388 His Kinase A (phosphoacceptor) domain AL549_17175 SM00448 cheY-homologous receiver domain AL549_17195 SM00382 ATPases associated with a variety of cellular activities AL549_17200 SM00382 ATPases associated with a variety of cellular activities AL549_17220 SM01068 Putative carbohydrate binding domain AL549_17230 SM00382 ATPases associated with a variety of cellular activities AL549_17250 SM00938 Nitrogen regulatory protein P-II AL549_17290 SM00487 DEAD-like helicases superfamily AL549_17290 SM00490 helicase superfamily c-terminal domain AL549_17290 SM00847 Helicase associated domain (HA2) Add an annotation AL549_17335 SM00382 ATPases associated with a variety of cellular activities AL549_17345 SM00947 Carbonic anhydrase AL549_17375 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_17375 SM00895 AL549_17375 AL549_17380 SM00644 AL549_17380 AL549_17445 SM00382 ATPases associated with a variety of cellular activities AL549_17445 SM00962 SRP54-type protein, GTPase domain AL549_17445 SM00963 SRP54-type protein, helical bundle domain AL549_17455 SM01091 Transporter associated domain AL549_17485 SM00829 Enoylreductase AL549_17555 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL549_17565 SM00382 ATPases associated with a variety of cellular activities AL549_17575 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL549_17575 SM00534 ATPase domain of DNA mismatch repair MUTS family AL549_17585 SM00257 Lysin motif AL549_17620 SM01192 AL549_17620 AL549_17620 SM01193 AL549_17620 AL549_17635 SM00954 Region found in RelA / SpoT proteins AL549_17645 SM00073 Histidine Phosphotransfer domain AL549_17645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_17645 SM00387 Histidine kinase-like ATPases AL549_17645 SM00388 His Kinase A (phosphoacceptor) domain AL549_17645 SM00448 cheY-homologous receiver domain AL549_17650 SM00267 diguanylate cyclase AL549_17685 SM00358 Double-stranded RNA binding motif AL549_17685 SM00535 Ribonuclease III family AL549_17695 SM00838 Elongation factor G C-terminus AL549_17820 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_17830 SM00861 Transketolase, pyrimidine binding domain AL549_17845 SM00731 SprT homologues. AL549_17875 SM00732 Likely ribonuclease with RNase H fold. AL549_17905 SM01152 AL549_17905 AL549_17920 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_17925 SM00478 endonuclease III AL549_17940 SM00478 endonuclease III AL549_17940 SM00525 AL549_17940 AL549_17970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_17970 SM01049 AL549_17970 AL549_18010 SM00849 Metallo-beta-lactamase superfamily AL549_18055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_18065 SM00354 helix_turn _helix lactose operon repressor AL549_18095 SM00495 Chitin-binding domain type 3 AL549_18200 SM00487 DEAD-like helicases superfamily AL549_18200 SM00490 helicase superfamily c-terminal domain AL549_18205 SM00670 Large family of predicted nucleotide-binding domains AL549_18225 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_18295 SM00382 ATPases associated with a variety of cellular activities AL549_18300 SM00028 Tetratricopeptide repeats AL549_18310 SM00965 Secretin and TonB N terminus short domain AL549_18330 SM00052 Putative diguanylate phosphodiesterase AL549_18330 SM00267 diguanylate cyclase AL549_18340 SM00421 helix_turn_helix, Lux Regulon AL549_18370 SM01018 B12 binding domain AL549_18380 SM00091 PAS domain AL549_18380 SM00267 diguanylate cyclase AL549_18385 SM00897 FIST N domain AL549_18385 SM01204 AL549_18385 AL549_18505 SM01005 Alanine racemase, C-terminal domain AL549_18565 SM00965 Secretin and TonB N terminus short domain AL549_18620 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_18660 SM00919 Malic enzyme, NAD binding domain AL549_18660 SM01274 AL549_18660 AL549_18670 SM00487 DEAD-like helicases superfamily AL549_18670 SM00490 helicase superfamily c-terminal domain AL549_18675 SM00354 helix_turn _helix lactose operon repressor AL549_18690 SM00382 ATPases associated with a variety of cellular activities AL549_18690 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_18760 SM00838 Elongation factor G C-terminus AL549_18760 SM00889 Elongation factor G, domain IV AL549_18800 SM00320 WD40 repeats AL549_18835 SM00382 ATPases associated with a variety of cellular activities AL549_18860 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_18860 SM00419 helix_turn_helix, cAMP Regulatory protein AL549_18865 SM01150 AL549_18865 AL549_18910 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL549_18915 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_18915 SM00357 Cold shock protein domain AL549_18915 SM00955 AL549_18915 AL549_18935 SM00671 Sel1-like repeats. AL549_18940 SM00788 Adenylosuccinate synthetase AL549_18950 SM00244 prohibitin homologues AL549_18955 SM00244 prohibitin homologues AL549_18975 SM00853 MutL C terminal dimerisation domain AL549_18975 SM01340 AL549_18975 AL549_18980 SM00257 Lysin motif AL549_18980 SM00646 AL549_18980 AL549_19050 SM00479 AL549_19050 AL549_19080 SM00450 Rhodanese Homology Domain AL549_19095 SM00971 Serine acetyltransferase, N-terminal AL549_19150 SM00841 Elongation factor P, C-terminal AL549_19150 SM01185 AL549_19150 AL549_19175 SM00883 Chaperonin 10 Kd subunit AL549_19200 SM00448 cheY-homologous receiver domain AL549_19200 SM00862 Transcriptional regulatory protein, C terminal AL549_19205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_19205 SM00387 Histidine kinase-like ATPases AL549_19205 SM00388 His Kinase A (phosphoacceptor) domain AL549_19270 SM00387 Histidine kinase-like ATPases AL549_19270 SM00388 His Kinase A (phosphoacceptor) domain AL549_19270 SM00448 cheY-homologous receiver domain AL549_19280 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_19285 SM00479 AL549_19285 AL549_19305 SM00878 Biotin carboxylase C-terminal domain AL549_19325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_19325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_19325 SM01049 AL549_19325 AL549_19330 SM00422 helix_turn_helix, mercury resistance AL549_19335 SM00798 AICARFT/IMPCHase bienzyme AL549_19335 SM00851 MGS-like domain AL549_19340 SM01209 AL549_19340 AL549_19340 SM01210 AL549_19340 AL549_19350 SM00411 bacterial (prokaryotic) histone like domain AL549_19370 SM00986 Uracil DNA glycosylase superfamily AL549_19370 SM00987 UreE urease accessory protein, C-terminal domain AL549_19400 SM00663 RNA polymerase I subunit A N-terminus AL549_19425 SM00649 Ribosomal protein L11/L12 AL549_19430 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL549_19430 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL549_19485 SM00155 Phospholipase D. Active site motifs. AL549_19545 SM00360 RNA recognition motif AL549_19595 SM00563 Phosphate acyltransferases AL549_19620 SM00450 Rhodanese Homology Domain AL549_19635 SM00382 ATPases associated with a variety of cellular activities AL549_19640 SM00382 ATPases associated with a variety of cellular activities AL549_19640 SM00962 SRP54-type protein, GTPase domain AL549_19640 SM00963 SRP54-type protein, helical bundle domain AL549_19690 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL549_19695 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_19700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_19705 SM00052 Putative diguanylate phosphodiesterase AL549_19735 SM01144 AL549_19735 AL549_19740 SM00052 Putative diguanylate phosphodiesterase AL549_19740 SM00267 diguanylate cyclase AL549_19740 SM00897 FIST N domain AL549_19740 SM01204 AL549_19740 AL549_19775 SM01219 AL549_19775 AL549_19800 SM00028 Tetratricopeptide repeats AL549_19840 SM00052 Putative diguanylate phosphodiesterase AL549_19840 SM00091 PAS domain AL549_19840 SM00267 diguanylate cyclase AL549_19845 SM00344 helix_turn_helix ASNC type AL549_19900 SM00354 helix_turn _helix lactose operon repressor AL549_19905 SM00448 cheY-homologous receiver domain AL549_19915 SM00220 Serine/Threonine protein kinases, catalytic domain AL549_19965 SM00382 ATPases associated with a variety of cellular activities AL549_20100 SM00829 Enoylreductase AL549_20150 SM00052 Putative diguanylate phosphodiesterase AL549_20150 SM00267 diguanylate cyclase AL549_20150 SM01079 AL549_20150 AL549_20160 SM00387 Histidine kinase-like ATPases AL549_20160 SM00433 TopoisomeraseII AL549_20170 SM00480 DNA polymerase III beta subunit AL549_20175 SM00382 ATPases associated with a variety of cellular activities AL549_20175 SM00760 Bacterial dnaA protein helix-turn-helix domain AL549_20180 SM00062 Bacterial periplasmic substrate-binding proteins AL549_20190 SM00382 ATPases associated with a variety of cellular activities AL549_20220 SM01228 AL549_20220 AL549_20235 SM00470 ParB-like nuclease domain AL549_20275 SM00382 ATPases associated with a variety of cellular activities AL549_20295 SM00062 Bacterial periplasmic substrate-binding proteins AL549_20335 SM00382 ATPases associated with a variety of cellular activities AL549_20345 SM00563 Phosphate acyltransferases AL549_20405 SM00257 Lysin motif AL549_20430 SM01001 AIR carboxylase AL549_20540 SM00876 Biotin and Thiamin Synthesis associated domain AL549_20595 SM00342 helix_turn_helix, arabinose operon control protein AL549_20605 SM00341 Helicase and RNase D C-terminal AL549_20605 SM00487 DEAD-like helicases superfamily AL549_20605 SM00490 helicase superfamily c-terminal domain AL549_20605 SM00956 AL549_20605 AL549_20625 SM00487 DEAD-like helicases superfamily AL549_20625 SM00490 helicase superfamily c-terminal domain AL549_20635 SM00357 Cold shock protein domain AL549_20635 SM00382 ATPases associated with a variety of cellular activities AL549_20635 SM00959 Rho termination factor, N-terminal domain AL549_20785 SM01004 Delta-aminolevulinic acid dehydratase AL549_20790 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL549_20790 SM00474 3'-5' exonuclease AL549_20790 SM00475 5'-3' exonuclease AL549_20790 SM00482 DNA polymerase A domain AL549_20820 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_20825 SM00052 Putative diguanylate phosphodiesterase AL549_20825 SM00267 diguanylate cyclase AL549_20825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_20830 SM00382 ATPases associated with a variety of cellular activities AL549_20830 SM00448 cheY-homologous receiver domain AL549_20835 SM00091 PAS domain AL549_20835 SM00387 Histidine kinase-like ATPases AL549_20835 SM00388 His Kinase A (phosphoacceptor) domain AL549_20845 SM01230 AL549_20845 AL549_20895 SM00363 S4 RNA-binding domain AL549_20910 SM00382 ATPases associated with a variety of cellular activities AL549_20990 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_20990 SM00732 Likely ribonuclease with RNase H fold. AL549_21000 SM00448 cheY-homologous receiver domain AL549_21000 SM00862 Transcriptional regulatory protein, C terminal AL549_21005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_21005 SM00387 Histidine kinase-like ATPases AL549_21005 SM00388 His Kinase A (phosphoacceptor) domain AL549_21015 SM00487 DEAD-like helicases superfamily AL549_21015 SM00490 helicase superfamily c-terminal domain AL549_21025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_21025 SM00954 Region found in RelA / SpoT proteins AL549_21030 SM01409 AL549_21030 AL549_21035 SM00072 Guanylate kinase homologues. AL549_21040 SM00028 Tetratricopeptide repeats AL549_21090 SM00382 ATPases associated with a variety of cellular activities AL549_21095 SM00382 ATPases associated with a variety of cellular activities AL549_21155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_21155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_21155 SM01049 AL549_21155 AL549_21180 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL549_21180 SM01232 AL549_21180 AL549_21255 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_21385 SM00226 Low molecular weight phosphatase family AL549_21430 SM01321 AL549_21430 AL549_21475 SM00984 UDP binding domain AL549_21485 SM00849 Metallo-beta-lactamase superfamily AL549_21485 SM01027 Beta-Casp domain AL549_21495 SM01403 AL549_21495 AL549_21515 SM01382 AL549_21515 AL549_21515 SM01383 AL549_21515 AL549_21530 SM00322 K homology RNA-binding domain AL549_21550 SM01374 AL549_21550 AL549_21555 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL549_21620 SM00363 S4 RNA-binding domain AL549_21620 SM01390 AL549_21620 AL549_21625 SM00662 RNA polymerases D AL549_21710 SM00382 ATPases associated with a variety of cellular activities AL549_21790 SM00382 ATPases associated with a variety of cellular activities AL549_21805 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_21805 SM00924 MgtE intracellular N domain AL549_21835 SM00382 ATPases associated with a variety of cellular activities AL549_21855 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_21865 SM00382 ATPases associated with a variety of cellular activities AL549_21900 SM00563 Phosphate acyltransferases AL549_21975 SM00650 Ribosomal RNA adenine dimethylases AL549_21995 SM00271 DnaJ molecular chaperone homology domain AL549_22015 SM01329 AL549_22015 AL549_22020 SM00917 LeuA allosteric (dimerisation) domain AL549_22030 SM00014 Acid phosphatase homologues AL549_22060 SM00091 PAS domain AL549_22060 SM00267 diguanylate cyclase AL549_22065 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_22065 SM00895 AL549_22065 AL549_22075 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_22075 SM01134 AL549_22075 AL549_22105 SM00563 Phosphate acyltransferases AL549_22125 SM00400 zinc finger AL549_22125 SM00493 AL549_22125 AL549_22125 SM00766 DNA primase DnaG DnaB-binding AL549_22150 SM01207 AL549_22150 AL549_22155 SM00905 Dihydroneopterin aldolase AL549_22175 SM00382 ATPases associated with a variety of cellular activities AL549_22180 SM00287 Bacterial SH3 domain homologues AL549_23450 SM00974 AL549_23450 AL549_23895 SM01234 AL549_23895