locus-tag class description VV1_0002 PF07683 Cobalamin synthesis protein cobW C-terminal domain VV1_0002 PF02492 CobW/HypB/UreG, nucleotide-binding domain VV1_0003 PF01979 Amidohydrolase family VV1_0005 PF13592 Winged helix-turn helix VV1_0005 PF13358 DDE superfamily endonuclease VV1_0006 PF01594 AI-2E family transporter VV1_0007 PF00924 Mechanosensitive ion channel VV1_0007 PF12795 Mechanosensitive ion channel porin domain VV1_0007 PF12794 Mechanosensitive ion channel inner membrane domain 1 VV1_0010 PF00005 ABC transporter VV1_0011 PF02405 Permease MlaE VV1_0014 PF01966 HD domain VV1_0014 PF13286 Phosphohydrolase-associated domain VV1_0018 PF13145 PPIC-type PPIASE domain VV1_0019 PF00216 Bacterial DNA-binding protein VV1_0021 PF02190 ATP-dependent protease La (LON) substrate-binding domain VV1_0021 PF00004 ATPase family associated with various cellular activities (AAA) VV1_0021 PF05362 Lon protease (S16) C-terminal proteolytic domain VV1_0022 PF06689 ClpX C4-type zinc finger VV1_0022 PF07724 AAA domain (Cdc48 subfamily) VV1_0022 PF10431 C-terminal, D2-small domain, of ClpB protein VV1_0023 PF00574 Clp protease VV1_0024 PF05698 Bacterial trigger factor protein (TF) C-terminus VV1_0024 PF05697 Bacterial trigger factor protein (TF) VV1_0024 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV1_0025 PF02743 Cache domain VV1_0025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0025 PF00512 His Kinase A (phospho-acceptor) domain VV1_0026 PF02954 Bacterial regulatory protein, Fis family VV1_0026 PF00072 Response regulator receiver domain VV1_0026 PF00158 Sigma-54 interaction domain VV1_0028 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV1_0029 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV1_0030 PF03480 Bacterial extracellular solute-binding protein, family 7 VV1_0032 PF00005 ABC transporter VV1_0032 PF17912 MalK OB fold domain VV1_0032 PF03459 TOBE domain VV1_0033 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0035 PF01547 Bacterial extracellular solute-binding protein VV1_0036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0036 PF00672 HAMP domain VV1_0036 PF00512 His Kinase A (phospho-acceptor) domain VV1_0037 PF00072 Response regulator receiver domain VV1_0037 PF00486 Transcriptional regulatory protein, C terminal VV1_0039 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VV1_0040 PF00672 HAMP domain VV1_0040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_0040 PF02743 Cache domain VV1_0042 PF04820 Tryptophan halogenase VV1_0047 PF00550 Phosphopantetheine attachment site VV1_0048 PF00550 Phosphopantetheine attachment site VV1_0050 PF00501 AMP-binding enzyme VV1_0050 PF13193 AMP-binding enzyme C-terminal domain VV1_0052 PF00535 Glycosyl transferase family 2 VV1_0053 PF00221 Aromatic amino acid lyase VV1_0058 PF00109 Beta-ketoacyl synthase, N-terminal domain VV1_0058 PF02801 Beta-ketoacyl synthase, C-terminal domain VV1_0061 PF02801 Beta-ketoacyl synthase, C-terminal domain VV1_0061 PF00109 Beta-ketoacyl synthase, N-terminal domain VV1_0065 PF10400 Virulence activator alpha C-term VV1_0065 PF03551 Transcriptional regulator PadR-like family VV1_0070 PF12961 Domain of unknown function (DUF3850) VV1_0078 PF02899 Phage integrase, N-terminal SAM-like domain VV1_0078 PF00589 Phage integrase family VV1_0120 PF00166 Chaperonin 10 Kd subunit VV1_0122 PF00589 Phage integrase family VV1_0122 PF02899 Phage integrase, N-terminal SAM-like domain VV1_0125 PF18719 ArlS sensor domain VV1_0125 PF00512 His Kinase A (phospho-acceptor) domain VV1_0125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0126 PF00486 Transcriptional regulatory protein, C terminal VV1_0126 PF00072 Response regulator receiver domain VV1_0128 PF07670 Nucleoside recognition VV1_0128 PF01773 Na+ dependent nucleoside transporter N-terminus VV1_0128 PF07662 Na+ dependent nucleoside transporter C-terminus VV1_0129 PF03466 LysR substrate binding domain VV1_0129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0130 PF13406 Transglycosylase SLT domain VV1_0131 PF05166 YcgL domain VV1_0132 PF03775 Septum formation inhibitor MinC, C-terminal domain VV1_0132 PF05209 Septum formation inhibitor MinC, N-terminal domain VV1_0133 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV1_0134 PF03776 Septum formation topological specificity factor MinE VV1_0135 PF00570 HRDC domain VV1_0135 PF01612 3'-5' exonuclease VV1_0136 PF13193 AMP-binding enzyme C-terminal domain VV1_0136 PF00501 AMP-binding enzyme VV1_0137 PF00561 alpha/beta hydrolase fold VV1_0140 PF00814 Glycoprotease family VV1_0141 PF13307 Helicase C-terminal domain VV1_0141 PF04851 Type III restriction enzyme, res subunit VV1_0143 PF01842 ACT domain VV1_0143 PF00551 Formyl transferase VV1_0144 PF06185 YecM protein VV1_0145 PF00750 tRNA synthetases class I (R) VV1_0145 PF05746 DALR anticodon binding domain VV1_0145 PF03485 Arginyl tRNA synthetase N terminal domain VV1_0148 PF07670 Nucleoside recognition VV1_0148 PF02421 Ferrous iron transport protein B VV1_0148 PF07664 Ferrous iron transport protein B C terminus VV1_0149 PF04023 FeoA domain VV1_0151 PF01297 Zinc-uptake complex component A periplasmic VV1_0152 PF00005 ABC transporter VV1_0153 PF00950 ABC 3 transport family VV1_0154 PF02629 CoA binding domain VV1_0154 PF00549 CoA-ligase VV1_0155 PF08442 ATP-grasp domain VV1_0155 PF00549 CoA-ligase VV1_0156 PF00364 Biotin-requiring enzyme VV1_0156 PF02817 e3 binding domain VV1_0156 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV1_0157 PF16870 2-oxoglutarate dehydrogenase C-terminal VV1_0157 PF16078 2-oxoglutarate dehydrogenase N-terminus VV1_0157 PF00676 Dehydrogenase E1 component VV1_0157 PF02779 Transketolase, pyrimidine binding domain VV1_0158 PF13085 2Fe-2S iron-sulfur cluster binding domain VV1_0159 PF02910 Fumarate reductase flavoprotein C-term VV1_0159 PF00890 FAD binding domain VV1_0160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV1_0161 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV1_0162 PF00285 Citrate synthase, C-terminal domain VV1_0163 PF01784 NIF3 (NGG1p interacting factor 3) VV1_0165 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_0165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV1_0166 PF00375 Sodium:dicarboxylate symporter family VV1_0167 PF01042 Endoribonuclease L-PSP VV1_0168 PF08348 YheO-like PAS domain VV1_0168 PF13309 HTH domain VV1_0169 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV1_0169 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV1_0169 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV1_0169 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV1_0170 PF17206 SeqA protein N-terminal domain VV1_0170 PF03925 SeqA protein C-terminal domain VV1_0171 PF12697 Alpha/beta hydrolase family VV1_0173 PF00258 Flavodoxin VV1_0175 PF01475 Ferric uptake regulator family VV1_0176 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV1_0176 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VV1_0179 PF00367 phosphotransferase system, EIIB VV1_0179 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV1_0179 PF02378 Phosphotransferase system, EIIC VV1_0180 PF01979 Amidohydrolase family VV1_0181 PF00480 ROK family VV1_0181 PF01047 MarR family VV1_0182 PF00999 Sodium/hydrogen exchanger family VV1_0182 PF02254 TrkA-N domain VV1_0183 PF00733 Asparagine synthase VV1_0183 PF13537 Glutamine amidotransferase domain VV1_0185 PF00854 POT family VV1_0186 PF00672 HAMP domain VV1_0186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_0186 PF17200 Single Cache domain 2 VV1_0187 PF00762 Ferrochelatase VV1_0188 PF05191 Adenylate kinase, active site lid VV1_0189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0189 PF00183 Hsp90 protein VV1_0190 PF00486 Transcriptional regulatory protein, C terminal VV1_0191 PF17323 Trans-membrane regulatory protein ToxS VV1_0194 PF12850 Calcineurin-like phosphoesterase superfamily domain VV1_0197 PF07556 Protein of unknown function (DUF1538) VV1_0198 PF07556 Protein of unknown function (DUF1538) VV1_0199 PF08338 Domain of unknown function (DUF1731) VV1_0199 PF01370 NAD dependent epimerase/dehydratase family VV1_0200 PF00106 short chain dehydrogenase VV1_0201 PF00085 Thioredoxin VV1_0202 PF16200 C-terminal region of band_7 VV1_0202 PF01145 SPFH domain / Band 7 family VV1_0206 PF01653 NAD-dependent DNA ligase adenylation domain VV1_0206 PF12826 Helix-hairpin-helix motif VV1_0206 PF00533 BRCA1 C Terminus (BRCT) domain VV1_0206 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VV1_0206 PF03120 NAD-dependent DNA ligase OB-fold domain VV1_0207 PF04354 ZipA, C-terminal FtsZ-binding domain VV1_0209 PF00291 Pyridoxal-phosphate dependent enzyme VV1_0210 PF00381 PTS HPr component phosphorylation site VV1_0211 PF02896 PEP-utilising enzyme, TIM barrel domain VV1_0211 PF00391 PEP-utilising enzyme, mobile domain VV1_0211 PF05524 PEP-utilising enzyme, N-terminal VV1_0212 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV1_0213 PF00669 Bacterial flagellin N-terminal helical region VV1_0213 PF07196 Flagellin hook IN motif VV1_0213 PF00700 Bacterial flagellin C-terminal helical region VV1_0214 PF00700 Bacterial flagellin C-terminal helical region VV1_0214 PF07196 Flagellin hook IN motif VV1_0214 PF00669 Bacterial flagellin N-terminal helical region VV1_0215 PF00669 Bacterial flagellin N-terminal helical region VV1_0215 PF07196 Flagellin hook IN motif VV1_0215 PF00700 Bacterial flagellin C-terminal helical region VV1_0216 PF00669 Bacterial flagellin N-terminal helical region VV1_0217 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV1_0217 PF07196 Flagellin hook IN motif VV1_0218 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV1_0218 PF10135 Rod binding protein VV1_0219 PF02119 Flagellar P-ring protein VV1_0220 PF02107 Flagellar L-ring protein VV1_0221 PF00460 Flagella basal body rod protein VV1_0221 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV1_0222 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV1_0222 PF00460 Flagella basal body rod protein VV1_0223 PF07559 Flagellar basal body protein FlaE VV1_0223 PF00460 Flagella basal body rod protein VV1_0223 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV1_0224 PF13860 FlgD Ig-like domain VV1_0224 PF03963 Flagellar hook capping protein - N-terminal region VV1_0224 PF13861 FlgD Tudor-like domain VV1_0225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV1_0225 PF00460 Flagella basal body rod protein VV1_0226 PF00460 Flagella basal body rod protein VV1_0227 PF01739 CheR methyltransferase, SAM binding domain VV1_0227 PF03705 CheR methyltransferase, all-alpha domain VV1_0228 PF01584 CheW-like domain VV1_0228 PF00072 Response regulator receiver domain VV1_0236 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV1_0237 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV1_0238 PF13609 Gram-negative porin VV1_0239 PF00403 Heavy-metal-associated domain VV1_0241 PF03173 Putative carbohydrate binding domain VV1_0241 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VV1_0241 PF00728 Glycosyl hydrolase family 20, catalytic domain VV1_0241 PF02838 Glycosyl hydrolase family 20, domain 2 VV1_0243 PF01963 TraB family VV1_0245 PF01713 Smr domain VV1_0246 PF01479 S4 domain VV1_0246 PF00849 RNA pseudouridylate synthase VV1_0247 PF04073 Aminoacyl-tRNA editing domain VV1_0248 PF02872 5'-nucleotidase, C-terminal domain VV1_0248 PF00149 Calcineurin-like phosphoesterase VV1_0249 PF00793 DAHP synthetase I family VV1_0250 PF13369 Transglutaminase-like superfamily VV1_0251 PF04247 Invasion gene expression up-regulator, SirB VV1_0252 PF13847 Methyltransferase domain VV1_0252 PF17827 PrmC N-terminal domain VV1_0253 PF00472 RF-1 domain VV1_0253 PF03462 PCRF domain VV1_0254 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VV1_0254 PF01488 Shikimate / quinate 5-dehydrogenase VV1_0254 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VV1_0255 PF03550 Outer membrane lipoprotein LolB VV1_0256 PF08544 GHMP kinases C terminal VV1_0256 PF00288 GHMP kinases N terminal domain VV1_0257 PF14572 Phosphoribosyl synthetase-associated domain VV1_0257 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VV1_0258 PF01195 Peptidyl-tRNA hydrolase VV1_0260 PF06071 Protein of unknown function (DUF933) VV1_0260 PF01926 50S ribosome-binding GTPase VV1_0265 PF01494 FAD binding domain VV1_0266 PF01938 TRAM domain VV1_0266 PF00919 Uncharacterized protein family UPF0004 VV1_0266 PF04055 Radical SAM superfamily VV1_0267 PF02562 PhoH-like protein VV1_0268 PF02130 Uncharacterized protein family UPF0054 VV1_0269 PF03471 Transporter associated domain VV1_0269 PF00571 CBS domain VV1_0270 PF00795 Carbon-nitrogen hydrolase VV1_0271 PF07295 Zinc-ribbon containing domain VV1_0272 PF00133 tRNA synthetases class I (I, L, M and V) VV1_0272 PF08264 Anticodon-binding domain of tRNA VV1_0272 PF13603 Leucyl-tRNA synthetase, Domain 2 VV1_0274 PF04390 Lipopolysaccharide-assembly VV1_0275 PF06144 DNA polymerase III, delta subunit VV1_0275 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VV1_0277 PF02590 Predicted SPOUT methyltransferase VV1_0278 PF03717 Penicillin-binding Protein dimerisation domain VV1_0278 PF00905 Penicillin binding protein transpeptidase domain VV1_0279 PF01098 Cell cycle protein VV1_0280 PF03330 Lytic transglycolase VV1_0280 PF05036 Sporulation related domain VV1_0281 PF00768 D-alanyl-D-alanine carboxypeptidase VV1_0281 PF07943 Penicillin-binding protein 5, C-terminal domain VV1_0282 PF04359 Protein of unknown function (DUF493) VV1_0283 PF03099 Biotin/lipoate A/B protein ligase family VV1_0284 PF04055 Radical SAM superfamily VV1_0284 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VV1_0286 PF00464 Serine hydroxymethyltransferase VV1_0288 PF00128 Alpha amylase, catalytic domain VV1_0288 PF16657 Maltogenic Amylase, C-terminal domain VV1_0289 PF02378 Phosphotransferase system, EIIC VV1_0289 PF00367 phosphotransferase system, EIIB VV1_0290 PF00356 Bacterial regulatory proteins, lacI family VV1_0292 PF00005 ABC transporter VV1_0292 PF09383 NIL domain VV1_0293 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0294 PF03180 NLPA lipoprotein VV1_0295 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VV1_0296 PF07348 Syd protein (SUKH-2) VV1_0297 PF14489 QueF-like protein VV1_0297 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VV1_0299 PF00990 Diguanylate cyclase, GGDEF domain VV1_0300 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VV1_0300 PF11892 Domain of unknown function (DUF3412) VV1_0300 PF03641 Possible lysine decarboxylase VV1_0301 PF01367 5'-3' exonuclease, C-terminal SAM fold VV1_0301 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV1_0302 PF01223 DNA/RNA non-specific endonuclease VV1_0303 PF01728 FtsJ-like methyltransferase VV1_0303 PF18125 RlmM ferredoxin-like domain VV1_0304 PF04241 Protein of unknown function (DUF423) VV1_0306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0306 PF03466 LysR substrate binding domain VV1_0310 PF02568 Thiamine biosynthesis protein (ThiI) VV1_0310 PF02926 THUMP domain VV1_0311 PF13677 Membrane MotB of proton-channel complex MotA/MotB VV1_0311 PF00691 OmpA family VV1_0312 PF01618 MotA/TolQ/ExbB proton channel family VV1_0313 PF02609 Exonuclease VII small subunit VV1_0314 PF00348 Polyprenyl synthetase VV1_0315 PF02780 Transketolase, C-terminal domain VV1_0315 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VV1_0315 PF02779 Transketolase, pyrimidine binding domain VV1_0316 PF04608 Phosphatidylglycerophosphatase A VV1_0317 PF02769 AIR synthase related protein, C-terminal domain VV1_0317 PF00586 AIR synthase related protein, N-terminal domain VV1_0318 PF01029 NusB family VV1_0319 PF00885 6,7-dimethyl-8-ribityllumazine synthase VV1_0321 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VV1_0321 PF00925 GTP cyclohydrolase II VV1_0322 PF00677 Lumazine binding domain VV1_0323 PF01872 RibD C-terminal domain VV1_0323 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV1_0324 PF03477 ATP cone domain VV1_0325 PF00171 Aldehyde dehydrogenase family VV1_0326 PF00696 Amino acid kinase family VV1_0326 PF01472 PUA domain VV1_0327 PF07417 Sigma factor-binding transcriptional regulator Crl VV1_0329 PF00156 Phosphoribosyl transferase domain VV1_0331 PF00860 Permease family VV1_0333 PF01546 Peptidase family M20/M25/M40 VV1_0333 PF07687 Peptidase dimerisation domain VV1_0340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VV1_0340 PF02769 AIR synthase related protein, C-terminal domain VV1_0340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VV1_0341 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_0341 PF01464 Transglycosylase SLT domain VV1_0342 PF14437 MafB19-like deaminase VV1_0343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0343 PF03466 LysR substrate binding domain VV1_0344 PF08240 Alcohol dehydrogenase GroES-like domain VV1_0344 PF00107 Zinc-binding dehydrogenase VV1_0345 PF00756 Putative esterase VV1_0346 PF03806 AbgT putative transporter family VV1_0352 PF07963 Prokaryotic N-terminal methylation motif VV1_0352 PF00114 Pilin (bacterial filament) VV1_0353 PF07963 Prokaryotic N-terminal methylation motif VV1_0353 PF00114 Pilin (bacterial filament) VV1_0354 PF00226 DnaJ domain VV1_0354 PF01556 DnaJ C terminal domain VV1_0354 PF00684 DnaJ central domain VV1_0357 PF00012 Hsp70 protein VV1_0363 PF00375 Sodium:dicarboxylate symporter family VV1_0365 PF01025 GrpE VV1_0366 PF01513 ATP-NAD kinase VV1_0367 PF02463 RecF/RecN/SMC N terminal domain VV1_0368 PF04355 SmpA / OmlA family VV1_0369 PF03658 RnfH family Ubiquitin VV1_0370 PF03364 Polyketide cyclase / dehydrase and lipid transport VV1_0371 PF01668 SmpB protein VV1_0372 PF00589 Phage integrase family VV1_0372 PF13356 Arm DNA-binding domain VV1_0372 PF14659 Phage integrase, N-terminal SAM-like domain VV1_0382 PF02463 RecF/RecN/SMC N terminal domain VV1_0385 PF00665 Integrase core domain VV1_0386 PF01527 Transposase VV1_0390 PF00717 Peptidase S24-like VV1_0391 PF11799 impB/mucB/samB family C-terminal domain VV1_0391 PF00817 impB/mucB/samB family VV1_0391 PF13438 Domain of unknown function (DUF4113) VV1_0409 PF01300 Telomere recombination VV1_0409 PF03481 Putative GTP-binding controlling metal-binding VV1_0411 PF02028 BCCT, betaine/carnitine/choline family transporter VV1_0412 PF07885 Ion channel VV1_0413 PF03466 LysR substrate binding domain VV1_0413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0414 PF01266 FAD dependent oxidoreductase VV1_0415 PF01235 Sodium:alanine symporter family VV1_0416 PF01184 GPR1/FUN34/yaaH family VV1_0417 PF00704 Glycosyl hydrolases family 18 VV1_0417 PF06483 Chitinase C VV1_0418 PF00117 Glutamine amidotransferase class-I VV1_0418 PF00958 GMP synthase C terminal domain VV1_0418 PF02540 NAD synthase VV1_0419 PF00478 IMP dehydrogenase / GMP reductase domain VV1_0419 PF00571 CBS domain VV1_0420 PF02601 Exonuclease VII, large subunit VV1_0420 PF13742 OB-fold nucleic acid binding domain VV1_0421 PF13185 GAF domain VV1_0421 PF00990 Diguanylate cyclase, GGDEF domain VV1_0423 PF01926 50S ribosome-binding GTPase VV1_0423 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VV1_0424 PF13360 PQQ-like domain VV1_0425 PF09976 Tetratricopeptide repeat-like domain VV1_0426 PF03129 Anticodon binding domain VV1_0426 PF13393 Histidyl-tRNA synthetase VV1_0427 PF04551 GcpE protein VV1_0428 PF13464 Domain of unknown function (DUF4115) VV1_0429 PF04055 Radical SAM superfamily VV1_0430 PF00334 Nucleoside diphosphate kinase VV1_0431 PF12404 Peptidase VV1_0431 PF00883 Cytosol aminopeptidase family, catalytic domain VV1_0432 PF04384 Iron-sulphur cluster assembly VV1_0433 PF00111 2Fe-2S iron-sulfur cluster binding domain VV1_0434 PF00012 Hsp70 protein VV1_0435 PF07743 HSCB C-terminal oligomerisation domain VV1_0435 PF00226 DnaJ domain VV1_0436 PF01521 Iron-sulphur cluster biosynthesis VV1_0437 PF01592 NifU-like N terminal domain VV1_0438 PF00266 Aminotransferase class-V VV1_0439 PF02082 Transcriptional regulator VV1_0440 PF00588 SpoU rRNA Methylase family VV1_0441 PF00459 Inositol monophosphatase family VV1_0442 PF07549 SecD/SecF GG Motif VV1_0442 PF02355 Protein export membrane protein VV1_0443 PF02355 Protein export membrane protein VV1_0443 PF07549 SecD/SecF GG Motif VV1_0443 PF13721 SecD export protein N-terminal TM region VV1_0444 PF02699 Preprotein translocase subunit VV1_0445 PF01702 Queuine tRNA-ribosyltransferase VV1_0446 PF02547 Queuosine biosynthesis protein VV1_0448 PF00571 CBS domain VV1_0449 PF00463 Isocitrate lyase family VV1_0450 PF01274 Malate synthase VV1_0451 PF03466 LysR substrate binding domain VV1_0451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0453 PF00578 AhpC/TSA family VV1_0453 PF10417 C-terminal domain of 1-Cys peroxiredoxin VV1_0454 PF03932 CutC family VV1_0455 PF03976 Polyphosphate kinase 2 (PPK2) VV1_0456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0456 PF03466 LysR substrate binding domain VV1_0460 PF01895 PhoU domain VV1_0461 PF00005 ABC transporter VV1_0462 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0463 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0464 PF13089 Polyphosphate kinase N-terminal domain VV1_0464 PF17941 Polyphosphate kinase C-terminal domain 1 VV1_0464 PF13090 Polyphosphate kinase C-terminal domain 2 VV1_0464 PF02503 Polyphosphate kinase middle domain VV1_0465 PF02541 Ppx/GppA phosphatase family VV1_0466 PF12849 PBP superfamily domain VV1_0467 PF11808 Phosphate regulon sensor protein PhoR VV1_0467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0467 PF00512 His Kinase A (phospho-acceptor) domain VV1_0467 PF00989 PAS fold VV1_0468 PF00486 Transcriptional regulatory protein, C terminal VV1_0468 PF00072 Response regulator receiver domain VV1_0469 PF04381 Putative exonuclease, RdgC VV1_0471 PF00037 4Fe-4S binding domain VV1_0472 PF03411 Penicillin-insensitive murein endopeptidase VV1_0482 PF07724 AAA domain (Cdc48 subfamily) VV1_0482 PF17871 AAA lid domain VV1_0482 PF00004 ATPase family associated with various cellular activities (AAA) VV1_0482 PF10431 C-terminal, D2-small domain, of ClpB protein VV1_0482 PF02861 Clp amino terminal domain, pathogenicity island component VV1_0484 PF00849 RNA pseudouridylate synthase VV1_0484 PF01479 S4 domain VV1_0485 PF13525 Outer membrane lipoprotein VV1_0486 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV1_0487 PF00800 Prephenate dehydratase VV1_0487 PF01817 Chorismate mutase type II VV1_0488 PF01931 Protein of unknown function DUF84 VV1_0489 PF01371 Trp repressor protein VV1_0490 PF01464 Transglycosylase SLT domain VV1_0490 PF14718 Soluble lytic murein transglycosylase L domain VV1_0491 PF12848 ABC transporter VV1_0491 PF00005 ABC transporter VV1_0492 PF07238 PilZ domain VV1_0493 PF04225 Opacity-associated protein A LysM-like domain VV1_0493 PF01551 Peptidase family M23 VV1_0494 PF02153 Prephenate dehydrogenase VV1_0494 PF01817 Chorismate mutase type II VV1_0495 PF00793 DAHP synthetase I family VV1_0496 PF00933 Glycosyl hydrolase family 3 N terminal domain VV1_0497 PF03702 Anhydro-N-acetylmuramic acid kinase VV1_0501 PF02554 Carbon starvation protein CstA VV1_0502 PF06580 Histidine kinase VV1_0502 PF07694 5TMR of 5TMR-LYT VV1_0503 PF00072 Response regulator receiver domain VV1_0503 PF04397 LytTr DNA-binding domain VV1_0504 PF02401 LytB protein VV1_0505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV1_0506 PF01252 Signal peptidase (SPase) II VV1_0507 PF06827 Zinc finger found in FPG and IleRS VV1_0507 PF00133 tRNA synthetases class I (I, L, M and V) VV1_0507 PF08264 Anticodon-binding domain of tRNA VV1_0508 PF01687 Riboflavin kinase VV1_0508 PF06574 FAD synthetase VV1_0509 PF03023 Lipid II flippase MurJ VV1_0511 PF01649 Ribosomal protein S20 VV1_0512 PF01022 Bacterial regulatory protein, arsR family VV1_0513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0513 PF03466 LysR substrate binding domain VV1_0514 PF02690 Na+/Pi-cotransporter VV1_0516 PF00303 Thymidylate synthase VV1_0517 PF01790 Prolipoprotein diacylglyceryl transferase VV1_0518 PF01925 Sulfite exporter TauE/SafE VV1_0519 PF02896 PEP-utilising enzyme, TIM barrel domain VV1_0519 PF01590 GAF domain VV1_0519 PF00391 PEP-utilising enzyme, mobile domain VV1_0519 PF05524 PEP-utilising enzyme, N-terminal VV1_0520 PF00293 NUDIX domain VV1_0521 PF02976 DNA mismatch repair enzyme MutH VV1_0523 PF00248 Aldo/keto reductase family VV1_0525 PF06505 Activator of aromatic catabolism VV1_0525 PF02830 V4R domain VV1_0525 PF00158 Sigma-54 interaction domain VV1_0525 PF02954 Bacterial regulatory protein, Fis family VV1_0526 PF01336 OB-fold nucleic acid binding domain VV1_0526 PF00152 tRNA synthetases class II (D, K and N) VV1_0527 PF00472 RF-1 domain VV1_0527 PF03462 PCRF domain VV1_0528 PF17768 RecJ OB domain VV1_0528 PF02272 DHHA1 domain VV1_0528 PF01368 DHH family VV1_0529 PF10411 Disulfide bond isomerase protein N-terminus VV1_0529 PF13098 Thioredoxin-like domain VV1_0530 PF00589 Phage integrase family VV1_0530 PF02899 Phage integrase, N-terminal SAM-like domain VV1_0531 PF00258 Flavodoxin VV1_0532 PF05525 Branched-chain amino acid transport protein VV1_0533 PF05175 Methyltransferase small domain VV1_0534 PF00270 DEAD/DEAH box helicase VV1_0534 PF00271 Helicase conserved C-terminal domain VV1_0535 PF03883 Peroxide stress protein YaaA VV1_0536 PF01235 Sodium:alanine symporter family VV1_0540 PF03167 Uracil DNA glycosylase superfamily VV1_0541 PF01261 Xylose isomerase-like TIM barrel VV1_0542 PF01228 Glycine radical VV1_0543 PF14821 Threonine synthase N terminus VV1_0543 PF00291 Pyridoxal-phosphate dependent enzyme VV1_0544 PF00288 GHMP kinases N terminal domain VV1_0544 PF08544 GHMP kinases C terminal VV1_0545 PF03447 Homoserine dehydrogenase, NAD binding domain VV1_0545 PF13840 ACT domain VV1_0545 PF00742 Homoserine dehydrogenase VV1_0545 PF01842 ACT domain VV1_0545 PF00696 Amino acid kinase family VV1_0547 PF03737 Aldolase/RraA VV1_0548 PF00486 Transcriptional regulatory protein, C terminal VV1_0548 PF00072 Response regulator receiver domain VV1_0550 PF00072 Response regulator receiver domain VV1_0550 PF00512 His Kinase A (phospho-acceptor) domain VV1_0550 PF00989 PAS fold VV1_0550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0550 PF01627 Hpt domain VV1_0550 PF18415 Histidine kinase receptor ArcB trans-membrane domain VV1_0551 PF00990 Diguanylate cyclase, GGDEF domain VV1_0551 PF00360 Phytochrome region VV1_0551 PF01590 GAF domain VV1_0551 PF00563 EAL domain VV1_0552 PF04055 Radical SAM superfamily VV1_0552 PF16199 Radical_SAM C-terminal domain VV1_0553 PF00310 Glutamine amidotransferases class-II VV1_0553 PF04898 Glutamate synthase central domain VV1_0553 PF01645 Conserved region in glutamate synthase VV1_0553 PF01493 GXGXG motif VV1_0554 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV1_0554 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_0555 PF01493 GXGXG motif VV1_0555 PF01645 Conserved region in glutamate synthase VV1_0555 PF04898 Glutamate synthase central domain VV1_0555 PF00310 Glutamine amidotransferases class-II VV1_0556 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_0556 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV1_0558 PF01048 Phosphorylase superfamily VV1_0559 PF17113 Regulatory signalling modulator protein AmpE VV1_0559 PF03186 CobD/Cbib protein VV1_0560 PF01497 Periplasmic binding protein VV1_0561 PF03458 UPF0126 domain VV1_0562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0562 PF03466 LysR substrate binding domain VV1_0563 PF01925 Sulfite exporter TauE/SafE VV1_0565 PF02142 MGS-like domain VV1_0565 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV1_0565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV1_0566 PF00117 Glutamine amidotransferase class-I VV1_0566 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VV1_0567 PF01113 Dihydrodipicolinate reductase, N-terminus VV1_0567 PF05173 Dihydrodipicolinate reductase, C-terminus VV1_0568 PF00293 NUDIX domain VV1_0569 PF02810 SEC-C motif VV1_0569 PF07517 SecA DEAD-like domain VV1_0569 PF01043 SecA preprotein cross-linking domain VV1_0569 PF07516 SecA Wing and Scaffold domain VV1_0571 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VV1_0572 PF00091 Tubulin/FtsZ family, GTPase domain VV1_0572 PF12327 FtsZ family, C-terminal domain VV1_0574 PF02491 SHS2 domain inserted in FTSA VV1_0575 PF03799 Cell division protein FtsQ VV1_0575 PF08478 POTRA domain, FtsQ-type VV1_0577 PF02875 Mur ligase family, glutamate ligase domain VV1_0577 PF01225 Mur ligase family, catalytic domain VV1_0577 PF08245 Mur ligase middle domain VV1_0578 PF04101 Glycosyltransferase family 28 C-terminal domain VV1_0578 PF03033 Glycosyltransferase family 28 N-terminal domain VV1_0579 PF01098 Cell cycle protein VV1_0580 PF08245 Mur ligase middle domain VV1_0580 PF02875 Mur ligase family, glutamate ligase domain VV1_0581 PF00953 Glycosyl transferase family 4 VV1_0581 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VV1_0582 PF01225 Mur ligase family, catalytic domain VV1_0582 PF02875 Mur ligase family, glutamate ligase domain VV1_0582 PF08245 Mur ligase middle domain VV1_0583 PF01225 Mur ligase family, catalytic domain VV1_0583 PF02875 Mur ligase family, glutamate ligase domain VV1_0583 PF08245 Mur ligase middle domain VV1_0584 PF03717 Penicillin-binding Protein dimerisation domain VV1_0584 PF00905 Penicillin binding protein transpeptidase domain VV1_0585 PF04999 Cell division protein FtsL VV1_0586 PF01795 MraW methylase family VV1_0588 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV1_0589 PF04348 LppC putative lipoprotein VV1_0590 PF02021 Uncharacterised protein family UPF0102 VV1_0591 PF13580 SIS domain VV1_0592 PF04972 BON domain VV1_0593 PF04386 Stringent starvation protein B VV1_0594 PF02798 Glutathione S-transferase, N-terminal domain VV1_0594 PF00043 Glutathione S-transferase, C-terminal domain VV1_0595 PF02167 Cytochrome C1 family VV1_0596 PF00033 Cytochrome b/b6/petB VV1_0596 PF00032 Cytochrome b(C-terminal)/b6/petD VV1_0597 PF00355 Rieske [2Fe-2S] domain VV1_0597 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VV1_0598 PF00380 Ribosomal protein S9/S16 VV1_0599 PF00572 Ribosomal protein L13 VV1_0600 PF03969 AFG1-like ATPase VV1_0601 PF06295 Protein of unknown function (DUF1043) VV1_0603 PF00595 PDZ domain VV1_0604 PF13180 PDZ domain VV1_0605 PF00521 DNA gyrase/topoisomerase IV, subunit A VV1_0605 PF03989 DNA gyrase C-terminal domain, beta-propeller VV1_0606 PF00204 DNA gyrase B VV1_0606 PF00986 DNA gyrase B subunit, carboxyl terminus VV1_0606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0606 PF01751 Toprim domain VV1_0607 PF05728 Uncharacterised protein family (UPF0227) VV1_0608 PF00149 Calcineurin-like phosphoesterase VV1_0609 PF06853 Protein of unknown function (DUF1249) VV1_0610 PF00293 NUDIX domain VV1_0612 PF02321 Outer membrane efflux protein VV1_0613 PF00294 pfkB family carbohydrate kinase VV1_0613 PF01467 Cytidylyltransferase-like VV1_0614 PF08335 GlnD PII-uridylyltransferase VV1_0614 PF03710 Glutamate-ammonia ligase adenylyltransferase VV1_0615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_0615 PF00672 HAMP domain VV1_0615 PF12729 Four helix bundle sensory module for signal transduction VV1_0616 PF07885 Ion channel VV1_0617 PF01928 CYTH domain VV1_0618 PF01865 Protein of unknown function DUF47 VV1_0619 PF01384 Phosphate transporter family VV1_0620 PF08239 Bacterial SH3 domain VV1_0621 PF01471 Putative peptidoglycan binding domain VV1_0621 PF13401 AAA domain VV1_0622 PF12627 Probable RNA and SrmB- binding site of polymerase A VV1_0622 PF01743 Poly A polymerase head domain VV1_0622 PF01966 HD domain VV1_0623 PF02673 Bacitracin resistance protein BacA VV1_0624 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV1_0625 PF02152 Dihydroneopterin aldolase VV1_0626 PF02660 Glycerol-3-phosphate acyltransferase VV1_0627 PF12697 Alpha/beta hydrolase family VV1_0628 PF00814 Glycoprotease family VV1_0629 PF01165 Ribosomal protein S21 VV1_0630 PF09424 Yqey-like protein VV1_0631 PF10410 DnaB-helicase binding domain of primase VV1_0631 PF08278 DNA primase DnaG DnaB-binding VV1_0631 PF01807 CHC2 zinc finger VV1_0631 PF08275 DNA primase catalytic core, N-terminal domain VV1_0632 PF00140 Sigma-70 factor, region 1.2 VV1_0632 PF04546 Sigma-70, non-essential region VV1_0632 PF04539 Sigma-70 region 3 VV1_0632 PF04545 Sigma-70, region 4 VV1_0632 PF04542 Sigma-70 region 2 VV1_0632 PF03979 Sigma-70 factor, region 1.1 VV1_0637 PF03480 Bacterial extracellular solute-binding protein, family 7 VV1_0638 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV1_0638 PF02378 Phosphotransferase system, EIIC VV1_0638 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV1_0639 PF08125 Mannitol dehydrogenase C-terminal domain VV1_0639 PF01232 Mannitol dehydrogenase Rossmann domain VV1_0640 PF05068 Mannitol repressor VV1_0641 PF01380 SIS domain VV1_0642 PF00455 DeoR C terminal sensor domain VV1_0642 PF08220 DeoR-like helix-turn-helix domain VV1_0644 PF00224 Pyruvate kinase, barrel domain VV1_0644 PF02887 Pyruvate kinase, alpha/beta domain VV1_0646 PF07694 5TMR of 5TMR-LYT VV1_0646 PF00990 Diguanylate cyclase, GGDEF domain VV1_0647 PF10369 Small subunit of acetolactate synthase VV1_0648 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV1_0648 PF00205 Thiamine pyrophosphate enzyme, central domain VV1_0648 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV1_0649 PF00501 AMP-binding enzyme VV1_0650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0650 PF03466 LysR substrate binding domain VV1_0652 PF01569 PAP2 superfamily VV1_0654 PF00682 HMGL-like VV1_0654 PF08502 LeuA allosteric (dimerisation) domain VV1_0655 PF00180 Isocitrate/isopropylmalate dehydrogenase VV1_0656 PF00330 Aconitase family (aconitate hydratase) VV1_0657 PF00694 Aconitase C-terminal domain VV1_0659 PF05099 Tellurite resistance protein TerB VV1_0659 PF00226 DnaJ domain VV1_0660 PF04453 LPS transport system D VV1_0660 PF03968 OstA-like protein VV1_0661 PF09312 SurA N-terminal domain VV1_0661 PF00639 PPIC-type PPIASE domain VV1_0662 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VV1_0663 PF00398 Ribosomal RNA adenine dimethylase VV1_0664 PF04379 ApaG domain VV1_0665 PF00149 Calcineurin-like phosphoesterase VV1_0666 PF00186 Dihydrofolate reductase VV1_0667 PF12821 Threonine/Serine exporter, ThrE VV1_0668 PF06738 Putative threonine/serine exporter VV1_0669 PF01018 GTP1/OBG VV1_0669 PF01926 50S ribosome-binding GTPase VV1_0670 PF01016 Ribosomal L27 protein VV1_0671 PF00829 Ribosomal prokaryotic L21 protein VV1_0672 PF00348 Polyprenyl synthetase VV1_0673 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VV1_0673 PF00056 lactate/malate dehydrogenase, NAD binding domain VV1_0674 PF01316 Arginine repressor, DNA binding domain VV1_0674 PF02863 Arginine repressor, C-terminal domain VV1_0675 PF16868 NMT1-like family VV1_0677 PF00582 Universal stress protein family VV1_0678 PF01553 Acyltransferase VV1_0679 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV1_0680 PF01722 BolA-like protein VV1_0682 PF05494 MlaC protein VV1_0683 PF02470 MlaD protein VV1_0684 PF02405 Permease MlaE VV1_0685 PF00005 ABC transporter VV1_0686 PF01699 Sodium/calcium exchanger protein VV1_0687 PF00571 CBS domain VV1_0687 PF01380 SIS domain VV1_0690 PF03968 OstA-like protein VV1_0691 PF00005 ABC transporter VV1_0691 PF12399 Branched-chain amino acid ATP-binding cassette transporter VV1_0692 PF04963 Sigma-54 factor, core binding domain VV1_0692 PF04552 Sigma-54, DNA binding domain VV1_0692 PF00309 Sigma-54 factor, Activator interacting domain (AID) VV1_0693 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV1_0694 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV1_0695 PF03668 P-loop ATPase protein family VV1_0697 PF00381 PTS HPr component phosphorylation site VV1_0698 PF03448 MgtE intracellular N domain VV1_0698 PF01769 Divalent cation transporter VV1_0698 PF00571 CBS domain VV1_0699 PF01523 Putative modulator of DNA gyrase VV1_0700 PF04751 Protein of unknown function (DUF615) VV1_0701 PF00005 ABC transporter VV1_0702 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0705 PF02441 Flavoprotein VV1_0706 PF08245 Mur ligase middle domain VV1_0706 PF01225 Mur ligase family, catalytic domain VV1_0706 PF02875 Mur ligase family, glutamate ligase domain VV1_0707 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VV1_0708 PF00719 Inorganic pyrophosphatase VV1_0710 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VV1_0711 PF04357 TamB, inner membrane protein subunit of TAM complex VV1_0712 PF17243 POTRA domain TamA domain 1 VV1_0712 PF07244 Surface antigen variable number repeat VV1_0712 PF01103 Surface antigen VV1_0713 PF01625 Peptide methionine sulfoxide reductase VV1_0715 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VV1_0719 PF12704 MacB-like periplasmic core domain VV1_0719 PF00005 ABC transporter VV1_0719 PF02687 FtsX-like permease family VV1_0724 PF03600 Citrate transporter VV1_0724 PF02080 TrkA-C domain VV1_0725 PF00009 Elongation factor Tu GTP binding domain VV1_0726 PF01507 Phosphoadenosine phosphosulfate reductase family VV1_0727 PF10414 Sirohaem synthase dimerisation region VV1_0727 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV1_0727 PF14824 Sirohaem biosynthesis protein central VV1_0728 PF02872 5'-nucleotidase, C-terminal domain VV1_0728 PF00149 Calcineurin-like phosphoesterase VV1_0730 PF13673 Acetyltransferase (GNAT) domain VV1_0732 PF08525 Opacity-associated protein A N-terminal motif VV1_0732 PF04225 Opacity-associated protein A LysM-like domain VV1_0733 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV1_0733 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV1_0735 PF01196 Ribosomal protein L17 VV1_0736 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VV1_0736 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VV1_0736 PF01000 RNA polymerase Rpb3/RpoA insert domain VV1_0737 PF01479 S4 domain VV1_0737 PF00163 Ribosomal protein S4/S9 N-terminal domain VV1_0738 PF00411 Ribosomal protein S11 VV1_0739 PF00416 Ribosomal protein S13/S18 VV1_0740 PF00344 SecY translocase VV1_0741 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VV1_0742 PF00327 Ribosomal protein L30p/L7e VV1_0743 PF00333 Ribosomal protein S5, N-terminal domain VV1_0743 PF03719 Ribosomal protein S5, C-terminal domain VV1_0744 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VV1_0745 PF00347 Ribosomal protein L6 VV1_0746 PF00410 Ribosomal protein S8 VV1_0747 PF00253 Ribosomal protein S14p/S29e VV1_0749 PF00673 ribosomal L5P family C-terminus VV1_0749 PF00281 Ribosomal protein L5 VV1_0750 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VV1_0750 PF00467 KOW motif VV1_0751 PF00238 Ribosomal protein L14p/L23e VV1_0753 PF00366 Ribosomal protein S17 VV1_0754 PF00831 Ribosomal L29 protein VV1_0755 PF00252 Ribosomal protein L16p/L10e VV1_0756 PF00189 Ribosomal protein S3, C-terminal domain VV1_0756 PF07650 KH domain VV1_0757 PF00237 Ribosomal protein L22p/L17e VV1_0758 PF00203 Ribosomal protein S19 VV1_0759 PF00181 Ribosomal Proteins L2, RNA binding domain VV1_0759 PF03947 Ribosomal Proteins L2, C-terminal domain VV1_0760 PF00276 Ribosomal protein L23 VV1_0761 PF00573 Ribosomal protein L4/L1 family VV1_0762 PF00297 Ribosomal protein L3 VV1_0763 PF00338 Ribosomal protein S10p/S20e VV1_0767 PF13322 Domain of unknown function (DUF4092) VV1_0767 PF13402 Peptidase M60, enhancin and enhancin-like VV1_0767 PF17291 N-terminal domain of M60-like peptidases VV1_0769 PF00753 Metallo-beta-lactamase superfamily VV1_0769 PF10996 Beta-Casp domain VV1_0769 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VV1_0774 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV1_0774 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV1_0775 PF02719 Polysaccharide biosynthesis protein VV1_0776 PF02397 Bacterial sugar transferase VV1_0777 PF01370 NAD dependent epimerase/dehydratase family VV1_0779 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VV1_0779 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV1_0779 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV1_0780 PF02350 UDP-N-acetylglucosamine 2-epimerase VV1_0781 PF02706 Chain length determinant protein VV1_0781 PF13807 G-rich domain on putative tyrosine kinase VV1_0781 PF13614 AAA domain VV1_0783 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV1_0786 PF02563 Polysaccharide biosynthesis/export protein VV1_0786 PF10531 SLBB domain VV1_0786 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV1_0793 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VV1_0795 PF06082 Exopolysaccharide biosynthesis protein YbjH VV1_0796 PF01370 NAD dependent epimerase/dehydratase family VV1_0797 PF03279 Bacterial lipid A biosynthesis acyltransferase VV1_0798 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV1_0799 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VV1_0803 PF02348 Cytidylyltransferase VV1_0804 PF00483 Nucleotidyl transferase VV1_0807 PF02350 UDP-N-acetylglucosamine 2-epimerase VV1_0808 PF03102 NeuB family VV1_0808 PF08666 SAF domain VV1_0810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV1_0811 PF02719 Polysaccharide biosynthesis protein VV1_0813 PF11893 Domain of unknown function (DUF3413) VV1_0813 PF00884 Sulfatase VV1_0815 PF01219 Prokaryotic diacylglycerol kinase VV1_0816 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV1_0817 PF00535 Glycosyl transferase family 2 VV1_0818 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV1_0819 PF01467 Cytidylyltransferase-like VV1_0821 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VV1_0821 PF06827 Zinc finger found in FPG and IleRS VV1_0821 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VV1_0823 PF00471 Ribosomal protein L33 VV1_0824 PF00830 Ribosomal L28 family VV1_0825 PF04002 RadC-like JAB domain VV1_0826 PF00672 HAMP domain VV1_0826 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_0826 PF02743 Cache domain VV1_0828 PF04127 DNA / pantothenate metabolism flavoprotein VV1_0828 PF02441 Flavoprotein VV1_0829 PF00440 Bacterial regulatory proteins, tetR family VV1_0830 PF03279 Bacterial lipid A biosynthesis acyltransferase VV1_0831 PF00156 Phosphoribosyl transferase domain VV1_0832 PF03725 3' exoribonuclease family, domain 2 VV1_0832 PF01138 3' exoribonuclease family, domain 1 VV1_0833 PF03755 YicC-like family, N-terminal region VV1_0833 PF08340 Domain of unknown function (DUF1732) VV1_0834 PF00892 EamA-like transporter family VV1_0837 PF00005 ABC transporter VV1_0837 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_0838 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_0838 PF00005 ABC transporter VV1_0839 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_0840 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0840 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_0841 PF00528 Binding-protein-dependent transport system inner membrane component VV1_0842 PF07715 TonB-dependent Receptor Plug Domain VV1_0842 PF00593 TonB dependent receptor VV1_0844 PF01618 MotA/TolQ/ExbB proton channel family VV1_0845 PF01618 MotA/TolQ/ExbB proton channel family VV1_0846 PF02472 Biopolymer transport protein ExbD/TolR VV1_0850 PF00625 Guanylate kinase VV1_0851 PF01192 RNA polymerase Rpb6 VV1_0852 PF04607 Region found in RelA / SpoT proteins VV1_0852 PF02824 TGS domain VV1_0852 PF13291 ACT domain VV1_0853 PF00588 SpoU rRNA Methylase family VV1_0853 PF12105 SpoU, rRNA methylase, C-terminal VV1_0854 PF00271 Helicase conserved C-terminal domain VV1_0854 PF00270 DEAD/DEAH box helicase VV1_0854 PF17191 RecG wedge domain VV1_0856 PF00860 Permease family VV1_0857 PF00512 His Kinase A (phospho-acceptor) domain VV1_0857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0857 PF00672 HAMP domain VV1_0858 PF00072 Response regulator receiver domain VV1_0858 PF00486 Transcriptional regulatory protein, C terminal VV1_0859 PF01272 Transcription elongation factor, GreA/GreB, C-term VV1_0859 PF03449 Transcription elongation factor, N-terminal VV1_0860 PF16921 Tex protein YqgF-like domain VV1_0860 PF09371 Tex-like protein N-terminal domain VV1_0860 PF17674 HHH domain VV1_0860 PF00575 S1 RNA binding domain VV1_0862 PF00561 alpha/beta hydrolase fold VV1_0863 PF00156 Phosphoribosyl transferase domain VV1_0864 PF01106 NifU-like domain VV1_0864 PF01521 Iron-sulphur cluster biosynthesis VV1_0865 PF00293 NUDIX domain VV1_0866 PF00459 Inositol monophosphatase family VV1_0867 PF01203 Type II secretion system (T2SS), protein N VV1_0868 PF04612 Type II secretion system (T2SS), protein M VV1_0869 PF05134 Type II secretion system (T2SS), protein L VV1_0869 PF12693 GspL periplasmic domain VV1_0870 PF03934 Type II secretion system (T2SS), protein K VV1_0871 PF11612 Type II secretion system (T2SS), protein J VV1_0871 PF07963 Prokaryotic N-terminal methylation motif VV1_0872 PF02501 Type II secretion system (T2SS), protein I VV1_0872 PF07963 Prokaryotic N-terminal methylation motif VV1_0873 PF12019 Type II transport protein GspH VV1_0874 PF07963 Prokaryotic N-terminal methylation motif VV1_0874 PF08334 Type II secretion system (T2SS), protein G VV1_0875 PF00482 Type II secretion system (T2SS), protein F VV1_0876 PF00437 Type II/IV secretion system protein VV1_0877 PF00263 Bacterial type II and III secretion system protein VV1_0877 PF03958 Bacterial type II/III secretion system short domain VV1_0878 PF11356 Type II secretion system protein C VV1_0879 PF01479 S4 domain VV1_0880 PF01430 Hsp33 protein VV1_0881 PF01293 Phosphoenolpyruvate carboxykinase VV1_0883 PF00583 Acetyltransferase (GNAT) family VV1_0883 PF09500 Putative thioesterase (yiiD_Cterm) VV1_0884 PF02580 D-Tyr-tRNA(Tyr) deacylase VV1_0885 PF03631 Virulence factor BrkB VV1_0889 PF03951 Glutamine synthetase, beta-Grasp domain VV1_0889 PF00120 Glutamine synthetase, catalytic domain VV1_0891 PF00512 His Kinase A (phospho-acceptor) domain VV1_0891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0891 PF00989 PAS fold VV1_0892 PF00158 Sigma-54 interaction domain VV1_0892 PF00072 Response regulator receiver domain VV1_0892 PF02954 Bacterial regulatory protein, Fis family VV1_0893 PF00563 EAL domain VV1_0893 PF03707 Bacterial signalling protein N terminal repeat VV1_0893 PF00990 Diguanylate cyclase, GGDEF domain VV1_0894 PF06969 HemN C-terminal domain VV1_0894 PF04055 Radical SAM superfamily VV1_0895 PF10675 Protein of unknown function (DUF2489) VV1_0896 PF04220 Der GTPase activator (YihI) VV1_0899 PF00034 Cytochrome c VV1_0900 PF01926 50S ribosome-binding GTPase VV1_0901 PF01612 3'-5' exonuclease VV1_0901 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV1_0901 PF01367 5'-3' exonuclease, C-terminal SAM fold VV1_0901 PF00476 DNA polymerase family A VV1_0902 PF00490 Delta-aminolevulinic acid dehydratase VV1_0903 PF01026 TatD related DNase VV1_0904 PF00902 Sec-independent protein translocase protein (TatC) VV1_0905 PF02416 mttA/Hcf106 family VV1_0906 PF02416 mttA/Hcf106 family VV1_0907 PF03109 ABC1 family VV1_0908 PF02036 SCP-2 sterol transfer family VV1_0909 PF01209 ubiE/COQ5 methyltransferase family VV1_0910 PF02646 RmuC family VV1_0914 PF13358 DDE superfamily endonuclease VV1_0933 PF00175 Oxidoreductase NAD-binding domain VV1_0934 PF00970 Oxidoreductase FAD-binding domain VV1_0934 PF00111 2Fe-2S iron-sulfur cluster binding domain VV1_0934 PF00175 Oxidoreductase NAD-binding domain VV1_0935 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VV1_0937 PF07498 Rho termination factor, N-terminal domain VV1_0937 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV1_0937 PF07497 Rho termination factor, RNA-binding domain VV1_0938 PF00085 Thioredoxin VV1_0939 PF00270 DEAD/DEAH box helicase VV1_0939 PF00271 Helicase conserved C-terminal domain VV1_0940 PF02541 Ppx/GppA phosphatase family VV1_0941 PF02592 Putative vitamin uptake transporter VV1_0943 PF00570 HRDC domain VV1_0943 PF00271 Helicase conserved C-terminal domain VV1_0943 PF00270 DEAD/DEAH box helicase VV1_0943 PF16124 RecQ zinc-binding VV1_0943 PF09382 RQC domain VV1_0944 PF00892 EamA-like transporter family VV1_0946 PF01810 LysE type translocator VV1_0949 PF13361 UvrD-like helicase C-terminal domain VV1_0949 PF00580 UvrD/REP helicase N-terminal domain VV1_0952 PF05114 Protein of unknown function (DUF692) VV1_0956 PF07690 Major Facilitator Superfamily VV1_0957 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0957 PF03466 LysR substrate binding domain VV1_0958 PF00557 Metallopeptidase family M24 VV1_0958 PF01321 Creatinase/Prolidase N-terminal domain VV1_0958 PF01321 Creatinase/Prolidase N-terminal domain VV1_0958 PF00557 Metallopeptidase family M24 VV1_0959 PF04055 Radical SAM superfamily VV1_0959 PF06968 Biotin and Thiamin Synthesis associated domain VV1_0960 PF05690 Thiazole biosynthesis protein ThiG VV1_0962 PF00899 ThiF family VV1_0963 PF02581 Thiamine monophosphate synthase VV1_0964 PF01964 Radical SAM ThiC family VV1_0964 PF13667 ThiC-associated domain VV1_0965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VV1_0966 PF00394 Multicopper oxidase VV1_0966 PF07732 Multicopper oxidase VV1_0966 PF07731 Multicopper oxidase VV1_0969 PF13358 DDE superfamily endonuclease VV1_0978 PF12724 Flavodoxin domain VV1_0979 PF02386 Cation transport protein VV1_0980 PF01205 Uncharacterized protein family UPF0029 VV1_0980 PF09186 Domain of unknown function (DUF1949) VV1_0981 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV1_0981 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV1_0981 PF00378 Enoyl-CoA hydratase/isomerase VV1_0982 PF02803 Thiolase, C-terminal domain VV1_0982 PF00108 Thiolase, N-terminal domain VV1_0983 PF08240 Alcohol dehydrogenase GroES-like domain VV1_0983 PF00107 Zinc-binding dehydrogenase VV1_0984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_0984 PF03466 LysR substrate binding domain VV1_0986 PF01206 Sulfurtransferase TusA VV1_0988 PF01169 Uncharacterized protein family UPF0016 VV1_0989 PF02091 Glycyl-tRNA synthetase alpha subunit VV1_0990 PF05746 DALR anticodon binding domain VV1_0990 PF02092 Glycyl-tRNA synthetase beta subunit VV1_0992 PF00155 Aminotransferase class I and II VV1_0993 PF00563 EAL domain VV1_0993 PF00990 Diguanylate cyclase, GGDEF domain VV1_0993 PF03707 Bacterial signalling protein N terminal repeat VV1_0994 PF00011 Hsp20/alpha crystallin family VV1_0996 PF18053 DNA gyrase B subunit insert domain VV1_0996 PF00986 DNA gyrase B subunit, carboxyl terminus VV1_0996 PF00204 DNA gyrase B VV1_0996 PF01751 Toprim domain VV1_0996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_0997 PF02463 RecF/RecN/SMC N terminal domain VV1_0998 PF02768 DNA polymerase III beta subunit, C-terminal domain VV1_0998 PF02767 DNA polymerase III beta subunit, central domain VV1_0998 PF00712 DNA polymerase III beta subunit, N-terminal domain VV1_0999 PF08299 Bacterial dnaA protein helix-turn-helix VV1_0999 PF00308 Bacterial dnaA protein VV1_0999 PF11638 DnaA N-terminal domain VV1_1001 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_1002 PF00528 Binding-protein-dependent transport system inner membrane component VV1_1003 PF00005 ABC transporter VV1_1004 PF00468 Ribosomal protein L34 VV1_1005 PF00825 Ribonuclease P VV1_1007 PF02096 60Kd inner membrane protein VV1_1007 PF14849 YidC periplasmic domain VV1_1008 PF01926 50S ribosome-binding GTPase VV1_1008 PF10396 GTP-binding protein TrmE N-terminus VV1_1008 PF12631 MnmE helical domain VV1_1009 PF00258 Flavodoxin VV1_1010 PF01134 Glucose inhibited division protein A VV1_1010 PF13932 GidA associated domain VV1_1011 PF02527 rRNA small subunit methyltransferase G VV1_1012 PF13614 AAA domain VV1_1013 PF02195 ParB-like nuclease domain VV1_1013 PF17762 HTH domain found in ParB protein VV1_1014 PF03899 ATP synthase I chain VV1_1015 PF00119 ATP synthase A chain VV1_1016 PF00137 ATP synthase subunit C VV1_1017 PF00430 ATP synthase B/B' CF(0) VV1_1018 PF00213 ATP synthase delta (OSCP) subunit VV1_1019 PF00306 ATP synthase alpha/beta chain, C terminal domain VV1_1019 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV1_1019 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV1_1020 PF00231 ATP synthase VV1_1021 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV1_1021 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV1_1022 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VV1_1022 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VV1_1023 PF12804 MobA-like NTP transferase domain VV1_1023 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_1023 PF14602 Hexapeptide repeat of succinyl-transferase VV1_1024 PF00528 Binding-protein-dependent transport system inner membrane component VV1_1025 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_1026 PF07690 Major Facilitator Superfamily VV1_1027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1027 PF03466 LysR substrate binding domain VV1_1028 PF00291 Pyridoxal-phosphate dependent enzyme VV1_1028 PF00585 C-terminal regulatory domain of Threonine dehydratase VV1_1029 PF00920 Dehydratase family VV1_1030 PF01063 Amino-transferase class IV VV1_1032 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV1_1032 PF00205 Thiamine pyrophosphate enzyme, central domain VV1_1032 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV1_1033 PF01078 Magnesium chelatase, subunit ChlI VV1_1033 PF13335 Magnesium chelatase, subunit ChlI C-terminal VV1_1035 PF01553 Acyltransferase VV1_1036 PF01323 DSBA-like thioredoxin domain VV1_1037 PF01636 Phosphotransferase enzyme family VV1_1038 PF13746 4Fe-4S dicluster domain VV1_1038 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VV1_1038 PF12801 4Fe-4S binding domain VV1_1039 PF06288 Protein of unknown function (DUF1040) VV1_1041 PF07070 SpoOM protein VV1_1043 PF03006 Haemolysin-III related VV1_1044 PF02386 Cation transport protein VV1_1045 PF02254 TrkA-N domain VV1_1045 PF02080 TrkA-C domain VV1_1046 PF01189 16S rRNA methyltransferase RsmB/F VV1_1046 PF01029 NusB family VV1_1047 PF02911 Formyl transferase, C-terminal domain VV1_1047 PF00551 Formyl transferase VV1_1048 PF01327 Polypeptide deformylase VV1_1050 PF02481 DNA recombination-mediator protein A VV1_1050 PF17782 DprA winged helix domain VV1_1051 PF04361 Protein of unknown function (DUF494) VV1_1052 PF01396 Topoisomerase DNA binding C4 zinc finger VV1_1053 PF02222 ATP-grasp domain VV1_1053 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VV1_1054 PF00731 AIR carboxylase VV1_1055 PF01300 Telomere recombination VV1_1056 PF01218 Coproporphyrinogen III oxidase VV1_1057 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VV1_1057 PF08501 Shikimate dehydrogenase substrate binding domain VV1_1057 PF01488 Shikimate / quinate 5-dehydrogenase VV1_1058 PF07369 Protein of unknown function (DUF1488) VV1_1059 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_1074 PF13358 DDE superfamily endonuclease VV1_1076 PF03466 LysR substrate binding domain VV1_1076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1077 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VV1_1077 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VV1_1078 PF04380 Membrane fusogenic activity VV1_1079 PF00873 AcrB/AcrD/AcrF family VV1_1080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_1081 PF00440 Bacterial regulatory proteins, tetR family VV1_1082 PF13361 UvrD-like helicase C-terminal domain VV1_1082 PF00580 UvrD/REP helicase N-terminal domain VV1_1084 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV1_1085 PF00005 ABC transporter VV1_1085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_1086 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_1088 PF00528 Binding-protein-dependent transport system inner membrane component VV1_1088 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_1095 PF03793 PASTA domain VV1_1095 PF00069 Protein kinase domain VV1_1098 PF00356 Bacterial regulatory proteins, lacI family VV1_1098 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV1_1099 PF00920 Dehydratase family VV1_1100 PF01202 Shikimate kinase VV1_1101 PF02447 GntP family permease VV1_1102 PF01081 KDPG and KHG aldolase VV1_1105 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_1105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV1_1106 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VV1_1108 PF01432 Peptidase family M3 VV1_1109 PF01037 Lrp/AsnC ligand binding domain VV1_1110 PF00563 EAL domain VV1_1110 PF08448 PAS fold VV1_1110 PF00990 Diguanylate cyclase, GGDEF domain VV1_1112 PF04445 Putative SAM-dependent methyltransferase VV1_1114 PF00892 EamA-like transporter family VV1_1115 PF00582 Universal stress protein family VV1_1116 PF00210 Ferritin-like domain VV1_1117 PF10625 Universal stress protein B (UspB) VV1_1120 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VV1_1121 PF02602 Uroporphyrinogen-III synthase HemD VV1_1122 PF03900 Porphobilinogen deaminase, C-terminal domain VV1_1122 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VV1_1123 PF01295 Adenylate cyclase, class-I VV1_1123 PF12633 Adenylate cyclase NT domain VV1_1124 PF01491 Frataxin-like domain VV1_1126 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VV1_1126 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV1_1127 PF01678 Diaminopimelate epimerase VV1_1129 PF02899 Phage integrase, N-terminal SAM-like domain VV1_1129 PF00589 Phage integrase family VV1_1130 PF13419 Haloacid dehalogenase-like hydrolase VV1_1132 PF08495 FIST N domain VV1_1132 PF00563 EAL domain VV1_1132 PF00990 Diguanylate cyclase, GGDEF domain VV1_1132 PF10442 FIST C domain VV1_1137 PF12146 Serine aminopeptidase, S33 VV1_1138 PF01810 LysE type translocator VV1_1139 PF08668 HDOD domain VV1_1139 PF00563 EAL domain VV1_1140 PF01022 Bacterial regulatory protein, arsR family VV1_1141 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_1141 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV1_1151 PF01914 MarC family integral membrane protein VV1_1154 PF02881 SRP54-type protein, helical bundle domain VV1_1154 PF00448 SRP54-type protein, GTPase domain VV1_1155 PF00005 ABC transporter VV1_1157 PF18075 FtsX extracellular domain VV1_1158 PF04545 Sigma-70, region 4 VV1_1158 PF04542 Sigma-70 region 2 VV1_1158 PF00140 Sigma-70 factor, region 1.2 VV1_1160 PF00581 Rhodanese-like domain VV1_1161 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VV1_1161 PF01694 Rhomboid family VV1_1162 PF03748 Flagellar basal body-associated protein FliL VV1_1163 PF04345 Chorismate lyase VV1_1164 PF01040 UbiA prenyltransferase family VV1_1165 PF01553 Acyltransferase VV1_1166 PF00717 Peptidase S24-like VV1_1166 PF01726 LexA DNA binding domain VV1_1168 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV1_1168 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_1169 PF00440 Bacterial regulatory proteins, tetR family VV1_1171 PF05958 tRNA (Uracil-5-)-methyltransferase VV1_1173 PF00593 TonB dependent receptor VV1_1173 PF07715 TonB-dependent Receptor Plug Domain VV1_1175 PF01177 Asp/Glu/Hydantoin racemase VV1_1193 PF13358 DDE superfamily endonuclease VV1_1195 PF13091 PLD-like domain VV1_1197 PF01565 FAD binding domain VV1_1197 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VV1_1198 PF08279 HTH domain VV1_1198 PF02237 Biotin protein ligase C terminal domain VV1_1198 PF03099 Biotin/lipoate A/B protein ligase family VV1_1200 PF00485 Phosphoribulokinase / Uridine kinase family VV1_1203 PF03144 Elongation factor Tu domain 2 VV1_1203 PF03143 Elongation factor Tu C-terminal domain VV1_1203 PF00009 Elongation factor Tu GTP binding domain VV1_1205 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VV1_1206 PF02357 Transcription termination factor nusG VV1_1206 PF00467 KOW motif VV1_1207 PF00298 Ribosomal protein L11, RNA binding domain VV1_1207 PF03946 Ribosomal protein L11, N-terminal domain VV1_1208 PF00687 Ribosomal protein L1p/L10e family VV1_1209 PF00466 Ribosomal protein L10 VV1_1210 PF00542 Ribosomal protein L7/L12 C-terminal domain VV1_1210 PF16320 Ribosomal protein L7/L12 dimerisation domain VV1_1211 PF04560 RNA polymerase Rpb2, domain 7 VV1_1211 PF04563 RNA polymerase beta subunit VV1_1211 PF04561 RNA polymerase Rpb2, domain 2 VV1_1211 PF00562 RNA polymerase Rpb2, domain 6 VV1_1211 PF04565 RNA polymerase Rpb2, domain 3 VV1_1211 PF10385 RNA polymerase beta subunit external 1 domain VV1_1212 PF05000 RNA polymerase Rpb1, domain 4 VV1_1212 PF04983 RNA polymerase Rpb1, domain 3 VV1_1212 PF00623 RNA polymerase Rpb1, domain 2 VV1_1212 PF04998 RNA polymerase Rpb1, domain 5 VV1_1212 PF04997 RNA polymerase Rpb1, domain 1 VV1_1213 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VV1_1214 PF00293 NUDIX domain VV1_1214 PF09297 NADH pyrophosphatase zinc ribbon domain VV1_1218 PF01208 Uroporphyrinogen decarboxylase (URO-D) VV1_1220 PF03167 Uracil DNA glycosylase superfamily VV1_1221 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV1_1221 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV1_1222 PF04222 Protein of unknown function (DUF416) VV1_1223 PF01595 Cyclin M transmembrane N-terminal domain VV1_1223 PF00571 CBS domain VV1_1224 PF00216 Bacterial DNA-binding protein VV1_1226 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VV1_1226 PF02843 Phosphoribosylglycinamide synthetase, C domain VV1_1226 PF02844 Phosphoribosylglycinamide synthetase, N domain VV1_1227 PF02142 MGS-like domain VV1_1227 PF01808 AICARFT/IMPCHase bienzyme VV1_1229 PF13411 MerR HTH family regulatory protein VV1_1230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_1230 PF17200 Single Cache domain 2 VV1_1230 PF00672 HAMP domain VV1_1231 PF02954 Bacterial regulatory protein, Fis family VV1_1232 PF01207 Dihydrouridine synthase (Dus) VV1_1234 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV1_1234 PF02785 Biotin carboxylase C-terminal domain VV1_1234 PF00289 Biotin carboxylase, N-terminal domain VV1_1235 PF00364 Biotin-requiring enzyme VV1_1236 PF01220 Dehydroquinase class II VV1_1237 PF00501 AMP-binding enzyme VV1_1237 PF16177 Acetyl-coenzyme A synthetase N-terminus VV1_1237 PF13193 AMP-binding enzyme C-terminal domain VV1_1241 PF12832 MFS_1 like family VV1_1242 PF00672 HAMP domain VV1_1242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1242 PF00512 His Kinase A (phospho-acceptor) domain VV1_1242 PF01627 Hpt domain VV1_1242 PF00072 Response regulator receiver domain VV1_1243 PF00474 Sodium:solute symporter family VV1_1245 PF01914 MarC family integral membrane protein VV1_1246 PF00072 Response regulator receiver domain VV1_1246 PF00196 Bacterial regulatory proteins, luxR family VV1_1247 PF02683 Cytochrome C biogenesis protein transmembrane region VV1_1247 PF11412 Disulphide bond corrector protein DsbC VV1_1248 PF03605 Anaerobic c4-dicarboxylate membrane transporter VV1_1249 PF00206 Lyase VV1_1249 PF10415 Fumarase C C-terminus VV1_1250 PF04186 FxsA cytoplasmic membrane protein VV1_1251 PF00588 SpoU rRNA Methylase family VV1_1252 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV1_1252 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV1_1253 PF16527 Two-component sensor protein CpxA, periplasmic domain VV1_1253 PF00672 HAMP domain VV1_1253 PF00512 His Kinase A (phospho-acceptor) domain VV1_1253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1254 PF00486 Transcriptional regulatory protein, C terminal VV1_1254 PF00072 Response regulator receiver domain VV1_1255 PF07813 LTXXQ motif family protein VV1_1256 PF16916 Dimerisation domain of Zinc Transporter VV1_1256 PF01545 Cation efflux family VV1_1257 PF00365 Phosphofructokinase VV1_1258 PF01554 MatE VV1_1259 PF00166 Chaperonin 10 Kd subunit VV1_1260 PF00118 TCP-1/cpn60 chaperonin family VV1_1262 PF02308 MgtC family VV1_1263 PF04055 Radical SAM superfamily VV1_1264 PF08207 Elongation factor P (EF-P) KOW-like domain VV1_1264 PF09285 Elongation factor P, C-terminal VV1_1264 PF01132 Elongation factor P (EF-P) OB domain VV1_1266 PF02313 Fumarate reductase subunit D VV1_1267 PF02300 Fumarate reductase subunit C VV1_1268 PF13183 4Fe-4S dicluster domain VV1_1268 PF13085 2Fe-2S iron-sulfur cluster binding domain VV1_1269 PF00890 FAD binding domain VV1_1269 PF02910 Fumarate reductase flavoprotein C-term VV1_1270 PF00152 tRNA synthetases class II (D, K and N) VV1_1272 PF00440 Bacterial regulatory proteins, tetR family VV1_1272 PF08360 QacR-like protein, C-terminal region VV1_1274 PF13006 Insertion element 4 transposase N-terminal VV1_1274 PF01609 Transposase DDE domain VV1_1275 PF01551 Peptidase family M23 VV1_1276 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_1276 PF06426 Serine acetyltransferase, N-terminal VV1_1277 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VV1_1277 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VV1_1278 PF02556 Preprotein translocase subunit SecB VV1_1280 PF00581 Rhodanese-like domain VV1_1281 PF01676 Metalloenzyme superfamily VV1_1281 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VV1_1283 PF00939 Sodium:sulfate symporter transmembrane region VV1_1284 PF02666 Phosphatidylserine decarboxylase VV1_1285 PF03193 RsgA GTPase VV1_1286 PF00929 Exonuclease VV1_1289 PF08331 Domain of unknown function (DUF1730) VV1_1290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VV1_1291 PF01520 N-acetylmuramoyl-L-alanine amidase VV1_1292 PF01119 DNA mismatch repair protein, C-terminal domain VV1_1292 PF08676 MutL C terminal dimerisation domain VV1_1294 PF17209 Hfq protein VV1_1295 PF16360 GTP-binding GTPase Middle Region VV1_1295 PF01926 50S ribosome-binding GTPase VV1_1295 PF13167 GTP-binding GTPase N-terminal VV1_1296 PF12221 Bacterial membrane protein N terminal VV1_1296 PF01145 SPFH domain / Band 7 family VV1_1297 PF01145 SPFH domain / Band 7 family VV1_1298 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VV1_1299 PF00709 Adenylosuccinate synthetase VV1_1300 PF08238 Sel1 repeat VV1_1301 PF00970 Oxidoreductase FAD-binding domain VV1_1301 PF00042 Globin VV1_1301 PF00175 Oxidoreductase NAD-binding domain VV1_1302 PF02082 Transcriptional regulator VV1_1303 PF01979 Amidohydrolase family VV1_1304 PF08461 Ribonuclease R winged-helix domain VV1_1304 PF17876 Cold shock domain VV1_1304 PF00773 RNB domain VV1_1304 PF00575 S1 RNA binding domain VV1_1304 PF08206 Ribonuclease B OB domain VV1_1305 PF00588 SpoU rRNA Methylase family VV1_1305 PF08032 RNA 2'-O ribose methyltransferase substrate binding VV1_1306 PF13419 Haloacid dehalogenase-like hydrolase VV1_1307 PF00579 tRNA synthetases class I (W and Y) VV1_1311 PF00117 Glutamine amidotransferase class-I VV1_1313 PF00202 Aminotransferase class-III VV1_1314 PF04958 Arginine N-succinyltransferase beta subunit VV1_1315 PF00171 Aldehyde dehydrogenase family VV1_1318 PF13545 Crp-like helix-turn-helix domain VV1_1318 PF00027 Cyclic nucleotide-binding domain VV1_1319 PF00485 Phosphoribulokinase / Uridine kinase family VV1_1320 PF06794 Uncharacterised protein family (UPF0270) VV1_1321 PF00561 alpha/beta hydrolase fold VV1_1323 PF12848 ABC transporter VV1_1323 PF00005 ABC transporter VV1_1324 PF02525 Flavodoxin-like fold VV1_1325 PF02254 TrkA-N domain VV1_1325 PF00999 Sodium/hydrogen exchanger family VV1_1327 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV1_1328 PF01112 Asparaginase VV1_1329 PF04102 SlyX VV1_1331 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV1_1331 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV1_1332 PF08348 YheO-like PAS domain VV1_1332 PF13309 HTH domain VV1_1333 PF02635 DsrE/DsrF-like family VV1_1334 PF02635 DsrE/DsrF-like family VV1_1335 PF04077 DsrH like protein VV1_1336 PF00164 Ribosomal protein S12/S23 VV1_1337 PF00177 Ribosomal protein S7p/S5e VV1_1338 PF14492 Elongation Factor G, domain II VV1_1338 PF00679 Elongation factor G C-terminus VV1_1338 PF00009 Elongation factor Tu GTP binding domain VV1_1338 PF03144 Elongation factor Tu domain 2 VV1_1338 PF03764 Elongation factor G, domain IV VV1_1339 PF03143 Elongation factor Tu C-terminal domain VV1_1339 PF00009 Elongation factor Tu GTP binding domain VV1_1339 PF03144 Elongation factor Tu domain 2 VV1_1340 PF04324 BFD-like [2Fe-2S] binding domain VV1_1341 PF00210 Ferritin-like domain VV1_1342 PF16363 GDP-mannose 4,6 dehydratase VV1_1343 PF00121 Triosephosphate isomerase VV1_1349 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VV1_1351 PF06005 Cell division protein ZapB VV1_1352 PF03737 Aldolase/RraA VV1_1353 PF01040 UbiA prenyltransferase family VV1_1355 PF10431 C-terminal, D2-small domain, of ClpB protein VV1_1355 PF07724 AAA domain (Cdc48 subfamily) VV1_1355 PF00004 ATPase family associated with various cellular activities (AAA) VV1_1356 PF00227 Proteasome subunit VV1_1358 PF00356 Bacterial regulatory proteins, lacI family VV1_1359 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VV1_1359 PF17764 3′ DNA-binding domain (3′BD) VV1_1359 PF00271 Helicase conserved C-terminal domain VV1_1359 PF00270 DEAD/DEAH box helicase VV1_1359 PF18074 Primosomal protein N C-terminal domain VV1_1360 PF01197 Ribosomal protein L31 VV1_1361 PF03949 Malic enzyme, NAD binding domain VV1_1361 PF00390 Malic enzyme, N-terminal domain VV1_1362 PF01340 Met Apo-repressor, MetJ VV1_1364 PF01053 Cys/Met metabolism PLP-dependent enzyme VV1_1365 PF00696 Amino acid kinase family VV1_1365 PF00742 Homoserine dehydrogenase VV1_1365 PF03447 Homoserine dehydrogenase, NAD binding domain VV1_1366 PF02219 Methylenetetrahydrofolate reductase VV1_1369 PF00311 Phosphoenolpyruvate carboxylase VV1_1370 PF07687 Peptidase dimerisation domain VV1_1370 PF01546 Peptidase family M20/M25/M40 VV1_1371 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV1_1371 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV1_1372 PF00696 Amino acid kinase family VV1_1373 PF00764 Arginosuccinate synthase VV1_1374 PF00583 Acetyltransferase (GNAT) family VV1_1374 PF14698 Argininosuccinate lyase C-terminal VV1_1374 PF00206 Lyase VV1_1375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1375 PF03466 LysR substrate binding domain VV1_1376 PF00905 Penicillin binding protein transpeptidase domain VV1_1376 PF17092 Penicillin-binding protein OB-like domain VV1_1376 PF00912 Transglycosylase VV1_1381 PF11741 AMIN domain VV1_1381 PF00263 Bacterial type II and III secretion system protein VV1_1381 PF07660 Secretin and TonB N terminus short domain VV1_1381 PF03958 Bacterial type II/III secretion system short domain VV1_1382 PF01202 Shikimate kinase VV1_1383 PF01761 3-dehydroquinate synthase VV1_1385 PF02086 D12 class N6 adenine-specific DNA methyltransferase VV1_1386 PF00834 Ribulose-phosphate 3 epimerase family VV1_1387 PF01250 Ribosomal protein S6 VV1_1388 PF00436 Single-strand binding protein family VV1_1389 PF01084 Ribosomal protein S18 VV1_1390 PF03948 Ribosomal protein L9, C-terminal domain VV1_1390 PF01281 Ribosomal protein L9, N-terminal domain VV1_1392 PF00772 DnaB-like helicase N terminal domain VV1_1392 PF03796 DnaB-like helicase C terminal domain VV1_1393 PF01168 Alanine racemase, N-terminal domain VV1_1393 PF00842 Alanine racemase, C-terminal domain VV1_1395 PF01894 Uncharacterised protein family UPF0047 VV1_1396 PF00342 Phosphoglucose isomerase VV1_1398 PF01207 Dihydrouridine synthase (Dus) VV1_1402 PF00175 Oxidoreductase NAD-binding domain VV1_1402 PF00258 Flavodoxin VV1_1402 PF00667 FAD binding domain VV1_1403 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV1_1403 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV1_1404 PF01507 Phosphoadenosine phosphosulfate reductase family VV1_1421 PF00072 Response regulator receiver domain VV1_1421 PF00990 Diguanylate cyclase, GGDEF domain VV1_1422 PF00999 Sodium/hydrogen exchanger family VV1_1423 PF00809 Pterin binding enzyme VV1_1423 PF02965 Vitamin B12 dependent methionine synthase, activation domain VV1_1423 PF02607 B12 binding domain VV1_1423 PF02574 Homocysteine S-methyltransferase VV1_1423 PF02310 B12 binding domain VV1_1424 PF01842 ACT domain VV1_1424 PF00696 Amino acid kinase family VV1_1425 PF00266 Aminotransferase class-V VV1_1427 PF17760 UvrA interaction domain VV1_1427 PF00005 ABC transporter VV1_1427 PF17755 UvrA DNA-binding domain VV1_1428 PF00483 Nucleotidyl transferase VV1_1429 PF00196 Bacterial regulatory proteins, luxR family VV1_1430 PF00436 Single-strand binding protein family VV1_1432 PF00990 Diguanylate cyclase, GGDEF domain VV1_1432 PF17157 Gammaproteobacterial periplasmic sensor domain VV1_1432 PF00563 EAL domain VV1_1436 PF00263 Bacterial type II and III secretion system protein VV1_1436 PF03958 Bacterial type II/III secretion system short domain VV1_1436 PF07660 Secretin and TonB N terminus short domain VV1_1436 PF11741 AMIN domain VV1_1437 PF13401 AAA domain VV1_1437 PF01471 Putative peptidoglycan binding domain VV1_1439 PF00437 Type II/IV secretion system protein VV1_1439 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV1_1440 PF00482 Type II secretion system (T2SS), protein F VV1_1442 PF07963 Prokaryotic N-terminal methylation motif VV1_1442 PF00114 Pilin (bacterial filament) VV1_1443 PF00114 Pilin (bacterial filament) VV1_1443 PF07963 Prokaryotic N-terminal methylation motif VV1_1450 PF04085 rod shape-determining protein MreC VV1_1451 PF04093 rod shape-determining protein MreD VV1_1452 PF02545 Maf-like protein VV1_1453 PF00575 S1 RNA binding domain VV1_1453 PF10150 Ribonuclease E/G family VV1_1454 PF13116 Protein of unknown function VV1_1454 PF13502 AsmA-like C-terminal region VV1_1455 PF00795 Carbon-nitrogen hydrolase VV1_1456 PF01523 Putative modulator of DNA gyrase VV1_1457 PF13638 PIN domain VV1_1457 PF02562 PhoH-like protein VV1_1459 PF18337 RapA N-terminal Tudor like domain VV1_1459 PF18339 RapA N-terminal Tudor like domain 1 VV1_1459 PF00271 Helicase conserved C-terminal domain VV1_1459 PF00176 SNF2 family N-terminal domain VV1_1459 PF12137 RNA polymerase recycling family C-terminal VV1_1461 PF00849 RNA pseudouridylate synthase VV1_1462 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV1_1462 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV1_1463 PF01042 Endoribonuclease L-PSP VV1_1464 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VV1_1464 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VV1_1465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV1_1465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV1_1466 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV1_1466 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV1_1468 PF06877 Regulator of ribonuclease activity B VV1_1470 PF00583 Acetyltransferase (GNAT) family VV1_1472 PF05987 Bacterial protein of unknown function (DUF898) VV1_1474 PF00133 tRNA synthetases class I (I, L, M and V) VV1_1474 PF08264 Anticodon-binding domain of tRNA VV1_1474 PF10458 Valyl tRNA synthetase tRNA binding arm VV1_1475 PF04364 DNA polymerase III chi subunit, HolC VV1_1476 PF02789 Cytosol aminopeptidase family, N-terminal domain VV1_1476 PF00883 Cytosol aminopeptidase family, catalytic domain VV1_1477 PF03739 Lipopolysaccharide export system permease LptF/LptG VV1_1478 PF03739 Lipopolysaccharide export system permease LptF/LptG VV1_1481 PF01522 Polysaccharide deacetylase VV1_1482 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV1_1483 PF02378 Phosphotransferase system, EIIC VV1_1484 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VV1_1485 PF02056 Family 4 glycosyl hydrolase VV1_1485 PF11975 Family 4 glycosyl hydrolase C-terminal domain VV1_1486 PF04794 YdjC-like protein VV1_1487 PF00356 Bacterial regulatory proteins, lacI family VV1_1489 PF00072 Response regulator receiver domain VV1_1511 PF13426 PAS domain VV1_1511 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_1511 PF08447 PAS fold VV1_1513 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VV1_1513 PF01464 Transglycosylase SLT domain VV1_1514 PF04362 Bacterial Fe(2+) trafficking VV1_1515 PF00730 HhH-GPD superfamily base excision DNA repair protein VV1_1515 PF00633 Helix-hairpin-helix motif VV1_1515 PF14815 NUDIX domain VV1_1516 PF02390 Putative methyltransferase VV1_1517 PF04960 Glutaminase VV1_1519 PF06969 HemN C-terminal domain VV1_1519 PF04055 Radical SAM superfamily VV1_1520 PF01725 Ham1 family VV1_1522 PF02594 Uncharacterised ACR, YggU family COG1872 VV1_1523 PF02325 YGGT family VV1_1524 PF14748 Pyrroline-5-carboxylate reductase dimerisation VV1_1524 PF03807 NADP oxidoreductase coenzyme F420-dependent VV1_1525 PF01168 Alanine racemase, N-terminal domain VV1_1526 PF00437 Type II/IV secretion system protein VV1_1527 PF00437 Type II/IV secretion system protein VV1_1528 PF03652 Holliday junction resolvase VV1_1529 PF02622 Uncharacterized ACR, COG1678 VV1_1530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VV1_1530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VV1_1531 PF04452 RNA methyltransferase VV1_1533 PF04231 Endonuclease I VV1_1534 PF10263 SprT-like family VV1_1534 PF17283 SprT-like zinc ribbon domain VV1_1536 PF02773 S-adenosylmethionine synthetase, C-terminal domain VV1_1536 PF00438 S-adenosylmethionine synthetase, N-terminal domain VV1_1536 PF02772 S-adenosylmethionine synthetase, central domain VV1_1537 PF02780 Transketolase, C-terminal domain VV1_1537 PF00456 Transketolase, thiamine diphosphate binding domain VV1_1537 PF02779 Transketolase, pyrimidine binding domain VV1_1539 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV1_1539 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_1540 PF00162 Phosphoglycerate kinase VV1_1541 PF01116 Fructose-bisphosphate aldolase class-II VV1_1542 PF00924 Mechanosensitive ion channel VV1_1542 PF05552 Conserved TM helix VV1_1543 PF01810 LysE type translocator VV1_1544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1544 PF03466 LysR substrate binding domain VV1_1546 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV1_1546 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV1_1546 PF01842 ACT domain VV1_1547 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VV1_1548 PF01812 5-formyltetrahydrofolate cyclo-ligase family VV1_1549 PF05164 Cell division protein ZapA VV1_1551 PF03695 Uncharacterised protein family (UPF0149) VV1_1552 PF01494 FAD binding domain VV1_1553 PF01494 FAD binding domain VV1_1556 PF01571 Aminomethyltransferase folate-binding domain VV1_1557 PF03937 Flavinator of succinate dehydrogenase VV1_1558 PF02910 Fumarate reductase flavoprotein C-term VV1_1558 PF00890 FAD binding domain VV1_1559 PF08281 Sigma-70, region 4 VV1_1559 PF04542 Sigma-70 region 2 VV1_1560 PF03873 Anti sigma-E protein RseA, C-terminal domain VV1_1560 PF03872 Anti sigma-E protein RseA, N-terminal domain VV1_1561 PF17188 MucB/RseB C-terminal domain VV1_1561 PF03888 MucB/RseB N-terminal domain VV1_1563 PF00679 Elongation factor G C-terminus VV1_1563 PF06421 GTP-binding protein LepA C-terminus VV1_1563 PF00009 Elongation factor Tu GTP binding domain VV1_1563 PF03144 Elongation factor Tu domain 2 VV1_1564 PF10502 Signal peptidase, peptidase S26 VV1_1565 PF14622 Ribonuclease-III-like VV1_1565 PF00035 Double-stranded RNA binding motif VV1_1566 PF07650 KH domain VV1_1566 PF01926 50S ribosome-binding GTPase VV1_1567 PF02565 Recombination protein O C terminal VV1_1567 PF11967 Recombination protein O N terminal VV1_1568 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VV1_1569 PF01648 4'-phosphopantetheinyl transferase superfamily VV1_1572 PF00563 EAL domain VV1_1572 PF00990 Diguanylate cyclase, GGDEF domain VV1_1573 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV1_1573 PF00072 Response regulator receiver domain VV1_1573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1573 PF00512 His Kinase A (phospho-acceptor) domain VV1_1573 PF00672 HAMP domain VV1_1573 PF01627 Hpt domain VV1_1574 PF01938 TRAM domain VV1_1574 PF05958 tRNA (Uracil-5-)-methyltransferase VV1_1575 PF04607 Region found in RelA / SpoT proteins VV1_1575 PF13291 ACT domain VV1_1575 PF02824 TGS domain VV1_1577 PF03819 MazG nucleotide pyrophosphohydrolase domain VV1_1578 PF06418 CTP synthase N-terminus VV1_1578 PF00117 Glutamine amidotransferase class-I VV1_1579 PF00113 Enolase, C-terminal TIM barrel domain VV1_1579 PF03952 Enolase, N-terminal domain VV1_1581 PF04977 Septum formation initiator VV1_1582 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VV1_1583 PF02542 YgbB family VV1_1584 PF01142 tRNA pseudouridine synthase D (TruD) VV1_1585 PF01975 Survival protein SurE VV1_1587 PF01476 LysM domain VV1_1587 PF01551 Peptidase family M23 VV1_1588 PF00140 Sigma-70 factor, region 1.2 VV1_1588 PF04542 Sigma-70 region 2 VV1_1588 PF04539 Sigma-70 region 3 VV1_1588 PF04545 Sigma-70, region 4 VV1_1589 PF05188 MutS domain II VV1_1589 PF05190 MutS family domain IV VV1_1589 PF05192 MutS domain III VV1_1589 PF00488 MutS domain V VV1_1589 PF01624 MutS domain I VV1_1590 PF02464 Competence-damaged protein VV1_1591 PF00154 recA bacterial DNA recombination protein VV1_1592 PF02631 RecX family VV1_1593 PF01411 tRNA synthetases class II (A) VV1_1593 PF02272 DHHA1 domain VV1_1593 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV1_1594 PF00696 Amino acid kinase family VV1_1594 PF01842 ACT domain VV1_1594 PF13840 ACT domain VV1_1595 PF02599 Global regulator protein family VV1_1600 PF04277 Oxaloacetate decarboxylase, gamma chain VV1_1601 PF00364 Biotin-requiring enzyme VV1_1601 PF02436 Conserved carboxylase domain VV1_1601 PF00682 HMGL-like VV1_1602 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VV1_1603 PF08240 Alcohol dehydrogenase GroES-like domain VV1_1603 PF00107 Zinc-binding dehydrogenase VV1_1604 PF09335 SNARE associated Golgi protein VV1_1605 PF05193 Peptidase M16 inactive domain VV1_1605 PF00675 Insulinase (Peptidase family M16) VV1_1606 PF04262 Glutamate-cysteine ligase VV1_1608 PF02664 S-Ribosylhomocysteinase (LuxS) VV1_1609 PF00571 CBS domain VV1_1609 PF03471 Transporter associated domain VV1_1609 PF01595 Cyclin M transmembrane N-terminal domain VV1_1610 PF01578 Cytochrome C assembly protein VV1_1612 PF02978 Signal peptide binding domain VV1_1612 PF02881 SRP54-type protein, helical bundle domain VV1_1612 PF00448 SRP54-type protein, GTPase domain VV1_1615 PF00886 Ribosomal protein S16 VV1_1616 PF05239 PRC-barrel domain VV1_1616 PF01782 RimM N-terminal domain VV1_1617 PF01746 tRNA (Guanine-1)-methyltransferase VV1_1618 PF01245 Ribosomal protein L19 VV1_1619 PF03884 DNA gyrase inhibitor YacG VV1_1620 PF07072 Cell division protein VV1_1622 PF01121 Dephospho-CoA kinase VV1_1623 PF01478 Type IV leader peptidase family VV1_1623 PF06750 Bacterial Peptidase A24 N-terminal domain VV1_1624 PF00482 Type II secretion system (T2SS), protein F VV1_1625 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV1_1625 PF00437 Type II/IV secretion system protein VV1_1626 PF00114 Pilin (bacterial filament) VV1_1626 PF07963 Prokaryotic N-terminal methylation motif VV1_1627 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VV1_1627 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VV1_1628 PF01510 N-acetylmuramoyl-L-alanine amidase VV1_1629 PF07729 FCD domain VV1_1629 PF00392 Bacterial regulatory proteins, gntR family VV1_1630 PF17831 Pyruvate dehydrogenase E1 component middle domain VV1_1630 PF00456 Transketolase, thiamine diphosphate binding domain VV1_1631 PF02817 e3 binding domain VV1_1631 PF00364 Biotin-requiring enzyme VV1_1631 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV1_1632 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV1_1632 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_1634 PF00440 Bacterial regulatory proteins, tetR family VV1_1636 PF00156 Phosphoribosyl transferase domain VV1_1637 PF00484 Carbonic anhydrase VV1_1638 PF00916 Sulfate permease family VV1_1638 PF01740 STAS domain VV1_1640 PF00005 ABC transporter VV1_1641 PF01061 ABC-2 type transporter VV1_1642 PF02569 Pantoate-beta-alanine ligase VV1_1643 PF02548 Ketopantoate hydroxymethyltransferase VV1_1644 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV1_1645 PF12626 Polymerase A arginine-rich C-terminus VV1_1645 PF12627 Probable RNA and SrmB- binding site of polymerase A VV1_1645 PF01743 Poly A polymerase head domain VV1_1647 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV1_1648 PF01258 Prokaryotic dksA/traR C4-type zinc finger VV1_1649 PF03749 Sugar fermentation stimulation protein RE domain VV1_1649 PF17746 SfsA N-terminal OB domain VV1_1650 PF00270 DEAD/DEAH box helicase VV1_1650 PF04408 Helicase associated domain (HA2) VV1_1650 PF00271 Helicase conserved C-terminal domain VV1_1650 PF08482 ATP-dependent helicase C-terminal VV1_1651 PF00912 Transglycosylase VV1_1651 PF14814 Bifunctional transglycosylase second domain VV1_1651 PF00905 Penicillin binding protein transpeptidase domain VV1_1652 PF01734 Patatin-like phospholipase VV1_1653 PF06434 Aconitate hydratase 2 N-terminus VV1_1653 PF00330 Aconitase family (aconitate hydratase) VV1_1653 PF11791 Aconitate B N-terminal domain VV1_1654 PF02595 Glycerate kinase family VV1_1655 PF02447 GntP family permease VV1_1656 PF13556 PucR C-terminal helix-turn-helix domain VV1_1656 PF17853 GGDEF-like domain VV1_1656 PF05651 Putative sugar diacid recognition VV1_1657 PF06062 Uncharacterised protein family (UPF0231) VV1_1658 PF00543 Nitrogen regulatory protein P-II VV1_1659 PF00909 Ammonium Transporter Family VV1_1660 PF13416 Bacterial extracellular solute-binding protein VV1_1663 PF08402 TOBE domain VV1_1663 PF00005 ABC transporter VV1_1664 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV1_1664 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV1_1664 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV1_1664 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV1_1665 PF06165 Glycosyltransferase family 36 VV1_1665 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VV1_1666 PF02838 Glycosyl hydrolase family 20, domain 2 VV1_1666 PF00728 Glycosyl hydrolase family 20, catalytic domain VV1_1667 PF01869 BadF/BadG/BcrA/BcrD ATPase family VV1_1669 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_1669 PF00005 ABC transporter VV1_1670 PF00005 ABC transporter VV1_1670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_1671 PF00528 Binding-protein-dependent transport system inner membrane component VV1_1671 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_1672 PF00528 Binding-protein-dependent transport system inner membrane component VV1_1673 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_1674 PF00512 His Kinase A (phospho-acceptor) domain VV1_1674 PF09308 LuxQ, periplasmic VV1_1674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1674 PF00072 Response regulator receiver domain VV1_1675 PF05175 Methyltransferase small domain VV1_1675 PF08468 Methyltransferase small domain N-terminal VV1_1676 PF01594 AI-2E family transporter VV1_1678 PF00202 Aminotransferase class-III VV1_1679 PF01521 Iron-sulphur cluster biosynthesis VV1_1680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_1681 PF00873 AcrB/AcrD/AcrF family VV1_1682 PF04225 Opacity-associated protein A LysM-like domain VV1_1682 PF01551 Peptidase family M23 VV1_1683 PF00579 tRNA synthetases class I (W and Y) VV1_1684 PF04304 Protein of unknown function (DUF454) VV1_1685 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VV1_1686 PF13609 Gram-negative porin VV1_1687 PF03449 Transcription elongation factor, N-terminal VV1_1687 PF01272 Transcription elongation factor, GreA/GreB, C-term VV1_1688 PF01985 CRS1 / YhbY (CRM) domain VV1_1689 PF01728 FtsJ-like methyltransferase VV1_1690 PF00004 ATPase family associated with various cellular activities (AAA) VV1_1690 PF01434 Peptidase family M41 VV1_1690 PF06480 FtsH Extracellular VV1_1690 PF17862 AAA+ lid domain VV1_1691 PF00809 Pterin binding enzyme VV1_1692 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV1_1692 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV1_1692 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV1_1692 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV1_1693 PF03840 Preprotein translocase SecG subunit VV1_1694 PF02576 RimP N-terminal domain VV1_1694 PF17384 RimP C-terminal SH3 domain VV1_1695 PF13184 NusA-like KH domain VV1_1695 PF08529 NusA N-terminal domain VV1_1695 PF00575 S1 RNA binding domain VV1_1696 PF08364 Bacterial translation initiation factor IF-2 associated region VV1_1696 PF11987 Translation-initiation factor 2 VV1_1696 PF04760 Translation initiation factor IF-2, N-terminal region VV1_1696 PF00009 Elongation factor Tu GTP binding domain VV1_1697 PF02033 Ribosome-binding factor A VV1_1698 PF16198 tRNA pseudouridylate synthase B C-terminal domain VV1_1698 PF01509 TruB family pseudouridylate synthase (N terminal domain) VV1_1698 PF09157 Pseudouridine synthase II TruB, C-terminal VV1_1699 PF13006 Insertion element 4 transposase N-terminal VV1_1699 PF01609 Transposase DDE domain VV1_1701 PF00312 Ribosomal protein S15 VV1_1708 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VV1_1708 PF01138 3' exoribonuclease family, domain 1 VV1_1708 PF00013 KH domain VV1_1708 PF00575 S1 RNA binding domain VV1_1708 PF03725 3' exoribonuclease family, domain 2 VV1_1709 PF13181 Tetratricopeptide repeat VV1_1709 PF07719 Tetratricopeptide repeat VV1_1711 PF01554 MatE VV1_1714 PF03707 Bacterial signalling protein N terminal repeat VV1_1714 PF00990 Diguanylate cyclase, GGDEF domain VV1_1714 PF00563 EAL domain VV1_1716 PF13508 Acetyltransferase (GNAT) domain VV1_1718 PF00583 Acetyltransferase (GNAT) family VV1_1719 PF00563 EAL domain VV1_1719 PF00990 Diguanylate cyclase, GGDEF domain VV1_1719 PF03707 Bacterial signalling protein N terminal repeat VV1_1720 PF00990 Diguanylate cyclase, GGDEF domain VV1_1720 PF08448 PAS fold VV1_1721 PF16658 Class II release factor RF3, C-terminal domain VV1_1721 PF00009 Elongation factor Tu GTP binding domain VV1_1721 PF03144 Elongation factor Tu domain 2 VV1_1722 PF01026 TatD related DNase VV1_1723 PF07670 Nucleoside recognition VV1_1723 PF07662 Na+ dependent nucleoside transporter C-terminus VV1_1723 PF01773 Na+ dependent nucleoside transporter N-terminus VV1_1725 PF01791 DeoC/LacD family aldolase VV1_1726 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VV1_1726 PF00591 Glycosyl transferase family, a/b domain VV1_1726 PF02885 Glycosyl transferase family, helical bundle domain VV1_1727 PF01676 Metalloenzyme superfamily VV1_1728 PF01048 Phosphorylase superfamily VV1_1730 PF18429 Domain of unknown function (DUF5609) VV1_1732 PF18073 Rubredoxin metal binding domain VV1_1733 PF03707 Bacterial signalling protein N terminal repeat VV1_1733 PF00990 Diguanylate cyclase, GGDEF domain VV1_1733 PF00563 EAL domain VV1_1737 PF03144 Elongation factor Tu domain 2 VV1_1737 PF00679 Elongation factor G C-terminus VV1_1737 PF14492 Elongation Factor G, domain II VV1_1737 PF00009 Elongation factor Tu GTP binding domain VV1_1737 PF03764 Elongation factor G, domain IV VV1_1740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1740 PF03466 LysR substrate binding domain VV1_1742 PF00501 AMP-binding enzyme VV1_1743 PF02311 AraC-like ligand binding domain VV1_1743 PF12833 Helix-turn-helix domain VV1_1749 PF04972 BON domain VV1_1749 PF00263 Bacterial type II and III secretion system protein VV1_1749 PF13629 Pilus formation protein N terminal region VV1_1755 PF00437 Type II/IV secretion system protein VV1_1759 PF02417 Chromate transporter VV1_1760 PF03466 LysR substrate binding domain VV1_1760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1763 PF01204 Trehalase VV1_1764 PF13520 Amino acid permease VV1_1765 PF13520 Amino acid permease VV1_1766 PF04074 YhcH/YjgK/YiaL VV1_1767 PF02837 Glycosyl hydrolases family 2, sugar binding domain VV1_1767 PF00703 Glycosyl hydrolases family 2 VV1_1767 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VV1_1767 PF02929 Beta galactosidase small chain VV1_1767 PF16353 Domain of unknown function(DUF4981) VV1_1769 PF00356 Bacterial regulatory proteins, lacI family VV1_1770 PF16363 GDP-mannose 4,6 dehydratase VV1_1771 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VV1_1771 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VV1_1772 PF08544 GHMP kinases C terminal VV1_1772 PF00288 GHMP kinases N terminal domain VV1_1772 PF10509 Galactokinase galactose-binding signature VV1_1773 PF01263 Aldose 1-epimerase VV1_1774 PF17200 Single Cache domain 2 VV1_1774 PF00672 HAMP domain VV1_1774 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_1775 PF00356 Bacterial regulatory proteins, lacI family VV1_1777 PF01588 Putative tRNA binding domain VV1_1782 PF02080 TrkA-C domain VV1_1782 PF18030 RimK PreATP-grasp domain VV1_1782 PF08443 RimK-like ATP-grasp domain VV1_1784 PF01544 CorA-like Mg2+ transporter protein VV1_1785 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VV1_1785 PF01266 FAD dependent oxidoreductase VV1_1786 PF08220 DeoR-like helix-turn-helix domain VV1_1786 PF00455 DeoR C terminal sensor domain VV1_1787 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VV1_1787 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VV1_1788 PF00230 Major intrinsic protein VV1_1790 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VV1_1790 PF14602 Hexapeptide repeat of succinyl-transferase VV1_1791 PF07130 YebG protein VV1_1792 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1792 PF03466 LysR substrate binding domain VV1_1794 PF00884 Sulfatase VV1_1794 PF11893 Domain of unknown function (DUF3413) VV1_1795 PF17946 RecC C-terminal domain VV1_1796 PF00580 UvrD/REP helicase N-terminal domain VV1_1796 PF13361 UvrD-like helicase C-terminal domain VV1_1796 PF12705 PD-(D/E)XK nuclease superfamily VV1_1797 PF13538 UvrD-like helicase C-terminal domain VV1_1799 PF00696 Amino acid kinase family VV1_1799 PF00583 Acetyltransferase (GNAT) family VV1_1801 PF03562 MltA specific insert domain VV1_1801 PF06725 3D domain VV1_1802 PF00899 ThiF family VV1_1803 PF02657 Fe-S metabolism associated domain VV1_1805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_1808 PF00266 Aminotransferase class-V VV1_1809 PF01965 DJ-1/PfpI family VV1_1810 PF08546 Ketopantoate reductase PanE/ApbA C terminal VV1_1810 PF02558 Ketopantoate reductase PanE/ApbA VV1_1811 PF03502 Nucleoside-specific channel-forming protein, Tsx VV1_1814 PF04542 Sigma-70 region 2 VV1_1814 PF04545 Sigma-70, region 4 VV1_1816 PF07690 Major Facilitator Superfamily VV1_1817 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV1_1819 PF05175 Methyltransferase small domain VV1_1820 PF01722 BolA-like protein VV1_1821 PF11973 NQRA C-terminal domain VV1_1821 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VV1_1822 PF03116 NQR2, RnfD, RnfE family VV1_1823 PF04205 FMN-binding domain VV1_1824 PF02508 Rnf-Nqr subunit, membrane protein VV1_1825 PF02508 Rnf-Nqr subunit, membrane protein VV1_1826 PF00175 Oxidoreductase NAD-binding domain VV1_1826 PF00111 2Fe-2S iron-sulfur cluster binding domain VV1_1826 PF00970 Oxidoreductase FAD-binding domain VV1_1827 PF02424 ApbE family VV1_1829 PF00072 Response regulator receiver domain VV1_1829 PF00990 Diguanylate cyclase, GGDEF domain VV1_1830 PF11799 impB/mucB/samB family C-terminal domain VV1_1830 PF00817 impB/mucB/samB family VV1_1831 PF00570 HRDC domain VV1_1831 PF16124 RecQ zinc-binding VV1_1831 PF00271 Helicase conserved C-terminal domain VV1_1831 PF09382 RQC domain VV1_1831 PF00270 DEAD/DEAH box helicase VV1_1833 PF00704 Glycosyl hydrolases family 18 VV1_1833 PF00041 Fibronectin type III domain VV1_1834 PF00209 Sodium:neurotransmitter symporter family VV1_1836 PF06786 Uncharacterised protein family (UPF0253) VV1_1838 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV1_1838 PF03129 Anticodon binding domain VV1_1838 PF04073 Aminoacyl-tRNA editing domain VV1_1839 PF01980 tRNA-methyltransferase O VV1_1839 PF18389 TrmO C-terminal domain VV1_1840 PF01197 Ribosomal protein L31 VV1_1841 PF03806 AbgT putative transporter family VV1_1845 PF01370 NAD dependent epimerase/dehydratase family VV1_1847 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VV1_1854 PF04287 tRNA pseudouridine synthase C VV1_1855 PF00849 RNA pseudouridylate synthase VV1_1856 PF11944 Protein of unknown function (DUF3461) VV1_1857 PF01909 Nucleotidyltransferase domain VV1_1857 PF01966 HD domain VV1_1857 PF08335 GlnD PII-uridylyltransferase VV1_1858 PF00557 Metallopeptidase family M24 VV1_1859 PF00318 Ribosomal protein S2 VV1_1860 PF00889 Elongation factor TS VV1_1861 PF00696 Amino acid kinase family VV1_1862 PF01765 Ribosome recycling factor VV1_1864 PF01255 Putative undecaprenyl diphosphate synthase VV1_1866 PF13288 DXP reductoisomerase C-terminal domain VV1_1866 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VV1_1866 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VV1_1867 PF02163 Peptidase family M50 VV1_1867 PF17820 PDZ domain VV1_1868 PF01103 Surface antigen VV1_1868 PF07244 Surface antigen variable number repeat VV1_1869 PF03938 Outer membrane protein (OmpH-like) VV1_1870 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VV1_1870 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_1871 PF07977 FabA-like domain VV1_1872 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VV1_1872 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_1873 PF02684 Lipid-A-disaccharide synthetase VV1_1874 PF01351 Ribonuclease HII VV1_1875 PF01336 OB-fold nucleic acid binding domain VV1_1875 PF14579 Helix-hairpin-helix motif VV1_1875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV1_1875 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV1_1875 PF02811 PHP domain VV1_1876 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VV1_1877 PF11734 TilS substrate C-terminal domain VV1_1877 PF01171 PP-loop family VV1_1877 PF09179 TilS substrate binding domain VV1_1878 PF00034 Cytochrome c VV1_1879 PF00543 Nitrogen regulatory protein P-II VV1_1880 PF03372 Endonuclease/Exonuclease/phosphatase family VV1_1882 PF01476 LysM domain VV1_1882 PF01464 Transglycosylase SLT domain VV1_1883 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV1_1883 PF00753 Metallo-beta-lactamase superfamily VV1_1884 PF08241 Methyltransferase domain VV1_1886 PF00075 RNase H VV1_1887 PF00929 Exonuclease VV1_1889 PF02525 Flavodoxin-like fold VV1_1890 PF00999 Sodium/hydrogen exchanger family VV1_1890 PF02254 TrkA-N domain VV1_1896 PF09317 Domain of unknown function (DUF1974) VV1_1896 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV1_1896 PF02770 Acyl-CoA dehydrogenase, middle domain VV1_1896 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV1_1897 PF13580 SIS domain VV1_1898 PF13230 Glutamine amidotransferases class-II VV1_1899 PF00551 Formyl transferase VV1_1900 PF00586 AIR synthase related protein, N-terminal domain VV1_1900 PF02769 AIR synthase related protein, C-terminal domain VV1_1902 PF00860 Permease family VV1_1905 PF03358 NADPH-dependent FMN reductase VV1_1906 PF03960 ArsC family VV1_1907 PF13181 Tetratricopeptide repeat VV1_1907 PF01435 Peptidase family M48 VV1_1909 PF01594 AI-2E family transporter VV1_1910 PF00578 AhpC/TSA family VV1_1911 PF01842 ACT domain VV1_1912 PF00701 Dihydrodipicolinate synthetase family VV1_1916 PF07687 Peptidase dimerisation domain VV1_1916 PF01546 Peptidase family M20/M25/M40 VV1_1917 PF03960 ArsC family VV1_1922 PF04261 Dyp-type peroxidase family VV1_1923 PF07196 Flagellin hook IN motif VV1_1923 PF00700 Bacterial flagellin C-terminal helical region VV1_1923 PF00669 Bacterial flagellin N-terminal helical region VV1_1924 PF00700 Bacterial flagellin C-terminal helical region VV1_1924 PF07196 Flagellin hook IN motif VV1_1924 PF00669 Bacterial flagellin N-terminal helical region VV1_1926 PF00700 Bacterial flagellin C-terminal helical region VV1_1926 PF07196 Flagellin hook IN motif VV1_1926 PF00669 Bacterial flagellin N-terminal helical region VV1_1927 PF03646 FlaG protein VV1_1928 PF07196 Flagellin hook IN motif VV1_1928 PF07195 Flagellar hook-associated protein 2 C-terminus VV1_1928 PF02465 Flagellar hook-associated protein 2 N-terminus VV1_1930 PF02561 Flagellar protein FliS VV1_1931 PF02954 Bacterial regulatory protein, Fis family VV1_1931 PF00072 Response regulator receiver domain VV1_1931 PF00158 Sigma-54 interaction domain VV1_1932 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1932 PF00512 His Kinase A (phospho-acceptor) domain VV1_1933 PF02954 Bacterial regulatory protein, Fis family VV1_1933 PF00072 Response regulator receiver domain VV1_1933 PF00158 Sigma-54 interaction domain VV1_1934 PF02049 Flagellar hook-basal body complex protein FliE VV1_1935 PF08345 Flagellar M-ring protein C-terminal VV1_1935 PF01514 Secretory protein of YscJ/FliF family VV1_1936 PF14841 FliG middle domain VV1_1936 PF14842 FliG N-terminal domain VV1_1936 PF01706 FliG C-terminal domain VV1_1938 PF18269 T3SS EscN ATPase C-terminal domain VV1_1938 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV1_1942 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV1_1942 PF02154 Flagellar motor switch protein FliM VV1_1943 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV1_1944 PF04347 Flagellar biosynthesis protein, FliO VV1_1945 PF00813 FliP family VV1_1946 PF01313 Bacterial export proteins, family 3 VV1_1947 PF01311 Bacterial export proteins, family 1 VV1_1948 PF01312 FlhB HrpN YscU SpaS Family VV1_1949 PF00771 FHIPEP family VV1_1950 PF00448 SRP54-type protein, GTPase domain VV1_1951 PF10609 NUBPL iron-transfer P-loop NTPase VV1_1952 PF04542 Sigma-70 region 2 VV1_1952 PF04539 Sigma-70 region 3 VV1_1952 PF04545 Sigma-70, region 4 VV1_1953 PF00072 Response regulator receiver domain VV1_1954 PF04344 Chemotaxis phosphatase, CheZ VV1_1955 PF01584 CheW-like domain VV1_1955 PF02895 Signal transducing histidine kinase, homodimeric domain VV1_1955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_1955 PF01627 Hpt domain VV1_1955 PF07194 P2 response regulator binding domain VV1_1956 PF01339 CheB methylesterase VV1_1956 PF00072 Response regulator receiver domain VV1_1957 PF13614 AAA domain VV1_1959 PF01584 CheW-like domain VV1_1961 PF00005 ABC transporter VV1_1962 PF03379 CcmB protein VV1_1963 PF01578 Cytochrome C assembly protein VV1_1964 PF04995 Heme exporter protein D (CcmD) VV1_1965 PF03100 CcmE VV1_1966 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV1_1966 PF01578 Cytochrome C assembly protein VV1_1967 PF08534 Redoxin VV1_1968 PF03918 Cytochrome C biogenesis protein VV1_1969 PF03918 Cytochrome C biogenesis protein VV1_1970 PF04333 MlaA lipoprotein VV1_1971 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV1_1972 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV1_1974 PF08281 Sigma-70, region 4 VV1_1974 PF04542 Sigma-70 region 2 VV1_1975 PF00108 Thiolase, N-terminal domain VV1_1975 PF02803 Thiolase, C-terminal domain VV1_1976 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV1_1976 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV1_1976 PF00378 Enoyl-CoA hydratase/isomerase VV1_1977 PF05193 Peptidase M16 inactive domain VV1_1977 PF00675 Insulinase (Peptidase family M16) VV1_1978 PF00300 Histidine phosphatase superfamily (branch 1) VV1_1979 PF01713 Smr domain VV1_1980 PF05175 Methyltransferase small domain VV1_1981 PF01264 Chorismate synthase VV1_1982 PF03458 UPF0126 domain VV1_1983 PF04315 Elongation factor P hydroxylase VV1_1984 PF08891 YfcL protein VV1_1985 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VV1_1985 PF01266 FAD dependent oxidoreductase VV1_1986 PF02801 Beta-ketoacyl synthase, C-terminal domain VV1_1986 PF00109 Beta-ketoacyl synthase, N-terminal domain VV1_1988 PF11890 Domain of unknown function (DUF3410) VV1_1988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV1_1988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV1_1989 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV1_1989 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV1_1992 PF01416 tRNA pseudouridine synthase VV1_1993 PF01039 Carboxyl transferase domain VV1_1993 PF17848 Acetyl-coA carboxylase zinc finger domain VV1_1994 PF08245 Mur ligase middle domain VV1_1994 PF02875 Mur ligase family, glutamate ligase domain VV1_1995 PF05036 Sporulation related domain VV1_1996 PF02674 Colicin V production protein VV1_1997 PF00156 Phosphoribosyl transferase domain VV1_1998 PF03466 LysR substrate binding domain VV1_1998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_1999 PF00072 Response regulator receiver domain VV1_2002 PF00156 Phosphoribosyl transferase domain VV1_2003 PF12170 DNA polymerase III tau subunit V interacting with alpha VV1_2003 PF12169 DNA polymerase III subunits gamma and tau domain III VV1_2003 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VV1_2004 PF02575 YbaB/EbfC DNA-binding family VV1_2005 PF02132 RecR protein VV1_2005 PF13662 Toprim domain VV1_2008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2008 PF00512 His Kinase A (phospho-acceptor) domain VV1_2008 PF00672 HAMP domain VV1_2009 PF00072 Response regulator receiver domain VV1_2009 PF00486 Transcriptional regulatory protein, C terminal VV1_2010 PF00230 Major intrinsic protein VV1_2012 PF03692 Putative zinc- or iron-chelating domain VV1_2014 PF03692 Putative zinc- or iron-chelating domain VV1_2016 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV1_2018 PF00245 Alkaline phosphatase VV1_2021 PF13847 Methyltransferase domain VV1_2022 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VV1_2022 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VV1_2030 PF01420 Type I restriction modification DNA specificity domain VV1_2031 PF02384 N-6 DNA Methylase VV1_2031 PF12161 HsdM N-terminal domain VV1_2037 PF04851 Type III restriction enzyme, res subunit VV1_2037 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VV1_2037 PF00271 Helicase conserved C-terminal domain VV1_2037 PF08463 EcoEI R protein C-terminal VV1_2046 PF01381 Helix-turn-helix VV1_2047 PF13657 HipA N-terminal domain VV1_2047 PF07804 HipA-like C-terminal domain VV1_2052 PF00571 CBS domain VV1_2052 PF01769 Divalent cation transporter VV1_2052 PF03448 MgtE intracellular N domain VV1_2053 PF00990 Diguanylate cyclase, GGDEF domain VV1_2055 PF00672 HAMP domain VV1_2055 PF02743 Cache domain VV1_2055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2058 PF18500 CadC C-terminal domain 1 VV1_2058 PF00486 Transcriptional regulatory protein, C terminal VV1_2059 PF13520 Amino acid permease VV1_2060 PF01276 Orn/Lys/Arg decarboxylase, major domain VV1_2060 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VV1_2060 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VV1_2061 PF00990 Diguanylate cyclase, GGDEF domain VV1_2062 PF00571 CBS domain VV1_2062 PF07085 DRTGG domain VV1_2062 PF00392 Bacterial regulatory proteins, gntR family VV1_2062 PF03061 Thioesterase superfamily VV1_2063 PF00403 Heavy-metal-associated domain VV1_2064 PF01048 Phosphorylase superfamily VV1_2066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2066 PF00672 HAMP domain VV1_2067 PF01230 HIT domain VV1_2070 PF13036 Peptidoglycan-synthase activator LpoB VV1_2070 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VV1_2072 PF05728 Uncharacterised protein family (UPF0227) VV1_2074 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_2078 PF02559 CarD-like/TRCF domain VV1_2078 PF00270 DEAD/DEAH box helicase VV1_2078 PF17757 UvrB interaction domain VV1_2078 PF00271 Helicase conserved C-terminal domain VV1_2078 PF03461 TRCF domain VV1_2080 PF02687 FtsX-like permease family VV1_2080 PF12704 MacB-like periplasmic core domain VV1_2081 PF00005 ABC transporter VV1_2082 PF12704 MacB-like periplasmic core domain VV1_2082 PF02687 FtsX-like permease family VV1_2084 PF13567 Domain of unknown function (DUF4131) VV1_2084 PF00753 Metallo-beta-lactamase superfamily VV1_2084 PF03772 Competence protein VV1_2085 PF00664 ABC transporter transmembrane region VV1_2085 PF00005 ABC transporter VV1_2086 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VV1_2087 PF03966 Trm112p-like protein VV1_2088 PF02348 Cytidylyltransferase VV1_2089 PF17155 Gammaproteobacterial periplasmic sensor domain VV1_2089 PF00990 Diguanylate cyclase, GGDEF domain VV1_2090 PF04293 SpoVR like protein VV1_2091 PF04285 Protein of unknown function (DUF444) VV1_2092 PF06798 PrkA serine protein kinase C-terminal domain VV1_2092 PF08298 PrkA AAA domain VV1_2093 PF03887 YfbU domain VV1_2095 PF04055 Radical SAM superfamily VV1_2096 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2096 PF00672 HAMP domain VV1_2098 PF02901 Pyruvate formate lyase-like VV1_2098 PF01228 Glycine radical VV1_2101 PF00005 ABC transporter VV1_2102 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_2103 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2104 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2106 PF03372 Endonuclease/Exonuclease/phosphatase family VV1_2107 PF00672 HAMP domain VV1_2107 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2107 PF02743 Cache domain VV1_2110 PF10689 Protein of unknown function (DUF2496) VV1_2111 PF07445 Primosomal replication protein priC VV1_2112 PF01925 Sulfite exporter TauE/SafE VV1_2113 PF06733 DEAD_2 VV1_2113 PF13307 Helicase C-terminal domain VV1_2114 PF13609 Gram-negative porin VV1_2115 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV1_2116 PF00849 RNA pseudouridylate synthase VV1_2118 PF03971 Monomeric isocitrate dehydrogenase VV1_2119 PF00313 'Cold-shock' DNA-binding domain VV1_2120 PF02617 ATP-dependent Clp protease adaptor protein ClpS VV1_2121 PF02861 Clp amino terminal domain, pathogenicity island component VV1_2121 PF10431 C-terminal, D2-small domain, of ClpB protein VV1_2121 PF17871 AAA lid domain VV1_2121 PF00004 ATPase family associated with various cellular activities (AAA) VV1_2121 PF07724 AAA domain (Cdc48 subfamily) VV1_2123 PF01176 Translation initiation factor 1A / IF-1 VV1_2124 PF04376 Arginine-tRNA-protein transferase, N terminus VV1_2124 PF04377 Arginine-tRNA-protein transferase, C terminus VV1_2127 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV1_2128 PF10692 Protein of unknown function (DUF2498) VV1_2130 PF01751 Toprim domain VV1_2130 PF08272 Topoisomerase I zinc-ribbon-like VV1_2130 PF01131 DNA topoisomerase VV1_2130 PF01396 Topoisomerase DNA binding C4 zinc finger VV1_2131 PF00483 Nucleotidyl transferase VV1_2132 PF00534 Glycosyl transferases group 1 VV1_2132 PF08323 Starch synthase catalytic domain VV1_2133 PF00561 alpha/beta hydrolase fold VV1_2136 PF04994 TfoX C-terminal domain VV1_2136 PF04993 TfoX N-terminal domain VV1_2138 PF00356 Bacterial regulatory proteins, lacI family VV1_2139 PF02613 Nitrate reductase delta subunit VV1_2140 PF00072 Response regulator receiver domain VV1_2140 PF00486 Transcriptional regulatory protein, C terminal VV1_2141 PF02698 DUF218 domain VV1_2143 PF17192 MukF middle domain VV1_2143 PF03882 MukF winged-helix domain VV1_2143 PF17193 MukF C-terminal domain VV1_2144 PF04288 MukE-like family VV1_2145 PF16330 MukB hinge domain VV1_2145 PF04310 MukB N-terminal VV1_2146 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VV1_2146 PF12833 Helix-turn-helix domain VV1_2147 PF00171 Aldehyde dehydrogenase family VV1_2148 PF05199 GMC oxidoreductase VV1_2148 PF00732 GMC oxidoreductase VV1_2149 PF00732 GMC oxidoreductase VV1_2149 PF05199 GMC oxidoreductase VV1_2152 PF18030 RimK PreATP-grasp domain VV1_2152 PF08443 RimK-like ATP-grasp domain VV1_2153 PF08003 Protein of unknown function (DUF1698) VV1_2154 PF13649 Methyltransferase domain VV1_2156 PF01336 OB-fold nucleic acid binding domain VV1_2156 PF02938 GAD domain VV1_2156 PF00152 tRNA synthetases class II (D, K and N) VV1_2157 PF02075 Crossover junction endodeoxyribonuclease RuvC VV1_2158 PF02203 Tar ligand binding domain homologue VV1_2158 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2158 PF00672 HAMP domain VV1_2159 PF07499 RuvA, C-terminal domain VV1_2159 PF01330 RuvA N terminal domain VV1_2160 PF05491 RuvB C-terminal winged helix domain VV1_2160 PF05496 Holliday junction DNA helicase RuvB P-loop domain VV1_2160 PF17864 RuvB AAA lid domain VV1_2162 PF01654 Cytochrome bd terminal oxidase subunit I VV1_2163 PF02322 Cytochrome bd terminal oxidase subunit II VV1_2164 PF08173 Membrane bound YbgT-like protein VV1_2166 PF03061 Thioesterase superfamily VV1_2167 PF01618 MotA/TolQ/ExbB proton channel family VV1_2168 PF02472 Biopolymer transport protein ExbD/TolR VV1_2170 PF07676 WD40-like Beta Propeller Repeat VV1_2170 PF04052 TolB amino-terminal domain VV1_2171 PF00691 OmpA family VV1_2172 PF13174 Tetratricopeptide repeat VV1_2172 PF16331 TolA binding protein trimerisation VV1_2173 PF02445 Quinolinate synthetase A protein VV1_2175 PF03994 Domain of Unknown Function (DUF350) VV1_2177 PF03738 Glutathionylspermidine synthase preATP-grasp VV1_2179 PF00512 His Kinase A (phospho-acceptor) domain VV1_2179 PF09308 LuxQ, periplasmic VV1_2179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2179 PF00072 Response regulator receiver domain VV1_2181 PF06610 L-alanine exporter VV1_2195 PF04229 GrpB protein VV1_2198 PF13419 Haloacid dehalogenase-like hydrolase VV1_2199 PF02743 Cache domain VV1_2199 PF00672 HAMP domain VV1_2199 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV1_2200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV1_2201 PF03741 Integral membrane protein TerC family VV1_2208 PF12833 Helix-turn-helix domain VV1_2208 PF02311 AraC-like ligand binding domain VV1_2209 PF00916 Sulfate permease family VV1_2209 PF01740 STAS domain VV1_2211 PF03707 Bacterial signalling protein N terminal repeat VV1_2211 PF00563 EAL domain VV1_2211 PF00990 Diguanylate cyclase, GGDEF domain VV1_2212 PF11842 Domain of unknown function (DUF3362) VV1_2212 PF08497 Radical SAM N-terminal VV1_2212 PF04055 Radical SAM superfamily VV1_2213 PF00990 Diguanylate cyclase, GGDEF domain VV1_2213 PF03707 Bacterial signalling protein N terminal repeat VV1_2213 PF00563 EAL domain VV1_2214 PF00563 EAL domain VV1_2214 PF00990 Diguanylate cyclase, GGDEF domain VV1_2214 PF03707 Bacterial signalling protein N terminal repeat VV1_2218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_2218 PF03466 LysR substrate binding domain VV1_2219 PF01717 Cobalamin-independent synthase, Catalytic domain VV1_2219 PF08267 Cobalamin-independent synthase, N-terminal domain VV1_2220 PF07085 DRTGG domain VV1_2220 PF01515 Phosphate acetyl/butaryl transferase VV1_2221 PF00871 Acetokinase family VV1_2222 PF04217 Protein of unknown function, DUF412 VV1_2225 PF02653 Branched-chain amino acid transport system / permease component VV1_2226 PF00005 ABC transporter VV1_2227 PF02903 Alpha amylase, N-terminal ig-like domain VV1_2227 PF00128 Alpha amylase, catalytic domain VV1_2228 PF00072 Response regulator receiver domain VV1_2228 PF00990 Diguanylate cyclase, GGDEF domain VV1_2229 PF01207 Dihydrouridine synthase (Dus) VV1_2230 PF02810 SEC-C motif VV1_2230 PF07516 SecA Wing and Scaffold domain VV1_2230 PF01043 SecA preprotein cross-linking domain VV1_2230 PF07517 SecA DEAD-like domain VV1_2231 PF02600 Disulfide bond formation protein DsbB VV1_2232 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VV1_2233 PF00392 Bacterial regulatory proteins, gntR family VV1_2233 PF07840 FadR C-terminal domain VV1_2234 PF00925 GTP cyclohydrolase II VV1_2235 PF13006 Insertion element 4 transposase N-terminal VV1_2235 PF01609 Transposase DDE domain VV1_2237 PF03480 Bacterial extracellular solute-binding protein, family 7 VV1_2239 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV1_2240 PF07730 Histidine kinase VV1_2240 PF17200 Single Cache domain 2 VV1_2241 PF00072 Response regulator receiver domain VV1_2241 PF00196 Bacterial regulatory proteins, luxR family VV1_2242 PF01047 MarR family VV1_2243 PF02028 BCCT, betaine/carnitine/choline family transporter VV1_2244 PF00672 HAMP domain VV1_2244 PF02743 Cache domain VV1_2244 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2248 PF00155 Aminotransferase class I and II VV1_2249 PF00672 HAMP domain VV1_2249 PF01966 HD domain VV1_2252 PF00392 Bacterial regulatory proteins, gntR family VV1_2252 PF00155 Aminotransferase class I and II VV1_2254 PF00152 tRNA synthetases class II (D, K and N) VV1_2254 PF01336 OB-fold nucleic acid binding domain VV1_2255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2255 PF17200 Single Cache domain 2 VV1_2255 PF00672 HAMP domain VV1_2257 PF01242 6-pyruvoyl tetrahydropterin synthase VV1_2259 PF00563 EAL domain VV1_2259 PF04940 Sensors of blue-light using FAD VV1_2260 PF03313 Serine dehydratase alpha chain VV1_2260 PF03315 Serine dehydratase beta chain VV1_2261 PF03222 Tryptophan/tyrosine permease family VV1_2262 PF00293 NUDIX domain VV1_2264 PF09308 LuxQ, periplasmic VV1_2264 PF00512 His Kinase A (phospho-acceptor) domain VV1_2264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2264 PF00072 Response regulator receiver domain VV1_2265 PF00425 chorismate binding enzyme VV1_2265 PF04715 Anthranilate synthase component I, N terminal region VV1_2268 PF04317 YcjX-like family, DUF463 VV1_2269 PF05128 Domain of unknown function (DUF697) VV1_2270 PF18024 Helix-turn-helix domain VV1_2270 PF00158 Sigma-54 interaction domain VV1_2270 PF13188 PAS domain VV1_2271 PF13302 Acetyltransferase (GNAT) domain VV1_2274 PF00939 Sodium:sulfate symporter transmembrane region VV1_2275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2275 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_2275 PF00512 His Kinase A (phospho-acceptor) domain VV1_2277 PF00990 Diguanylate cyclase, GGDEF domain VV1_2277 PF17158 Membrane-associated sensor, integral membrane domain VV1_2278 PF00563 EAL domain VV1_2278 PF05231 MASE1 VV1_2280 PF01966 HD domain VV1_2280 PF11871 Domain of unknown function (DUF3391) VV1_2281 PF00563 EAL domain VV1_2281 PF13188 PAS domain VV1_2281 PF03707 Bacterial signalling protein N terminal repeat VV1_2281 PF00990 Diguanylate cyclase, GGDEF domain VV1_2282 PF11230 Protein of unknown function (DUF3029) VV1_2283 PF04055 Radical SAM superfamily VV1_2284 PF03466 LysR substrate binding domain VV1_2284 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_2288 PF01966 HD domain VV1_2289 PF01734 Patatin-like phospholipase VV1_2292 PF00781 Diacylglycerol kinase catalytic domain VV1_2293 PF03222 Tryptophan/tyrosine permease family VV1_2294 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV1_2295 PF00072 Response regulator receiver domain VV1_2296 PF00210 Ferritin-like domain VV1_2299 PF00005 ABC transporter VV1_2299 PF00664 ABC transporter transmembrane region VV1_2300 PF00664 ABC transporter transmembrane region VV1_2300 PF00005 ABC transporter VV1_2301 PF01235 Sodium:alanine symporter family VV1_2302 PF02397 Bacterial sugar transferase VV1_2304 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV1_2304 PF10531 SLBB domain VV1_2304 PF02563 Polysaccharide biosynthesis/export protein VV1_2309 PF13439 Glycosyltransferase Family 4 VV1_2309 PF00534 Glycosyl transferases group 1 VV1_2310 PF00534 Glycosyl transferases group 1 VV1_2310 PF13439 Glycosyltransferase Family 4 VV1_2315 PF00563 EAL domain VV1_2315 PF00990 Diguanylate cyclase, GGDEF domain VV1_2315 PF03707 Bacterial signalling protein N terminal repeat VV1_2318 PF00012 Hsp70 protein VV1_2319 PF00012 Hsp70 protein VV1_2321 PF00990 Diguanylate cyclase, GGDEF domain VV1_2321 PF17158 Membrane-associated sensor, integral membrane domain VV1_2325 PF06629 MltA-interacting protein MipA VV1_2331 PF13629 Pilus formation protein N terminal region VV1_2331 PF00263 Bacterial type II and III secretion system protein VV1_2331 PF04972 BON domain VV1_2333 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV1_2334 PF00437 Type II/IV secretion system protein VV1_2341 PF02525 Flavodoxin-like fold VV1_2343 PF00271 Helicase conserved C-terminal domain VV1_2343 PF11898 Domain of unknown function (DUF3418) VV1_2343 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VV1_2343 PF00270 DEAD/DEAH box helicase VV1_2343 PF04408 Helicase associated domain (HA2) VV1_2349 PF00561 alpha/beta hydrolase fold VV1_2350 PF03280 Proteobacterial lipase chaperone protein VV1_2351 PF07690 Major Facilitator Superfamily VV1_2354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2354 PF00672 HAMP domain VV1_2354 PF12729 Four helix bundle sensory module for signal transduction VV1_2355 PF00491 Arginase family VV1_2356 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV1_2356 PF17810 Arginine decarboxylase helical bundle domain VV1_2356 PF17944 Arginine decarboxylase C-terminal helical extension VV1_2369 PF00990 Diguanylate cyclase, GGDEF domain VV1_2369 PF00072 Response regulator receiver domain VV1_2370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VV1_2370 PF01409 tRNA synthetases class II core domain (F) VV1_2371 PF01588 Putative tRNA binding domain VV1_2371 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VV1_2371 PF03147 Ferredoxin-fold anticodon binding domain VV1_2371 PF03483 B3/4 domain VV1_2371 PF03484 tRNA synthetase B5 domain VV1_2372 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VV1_2372 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VV1_2375 PF00216 Bacterial DNA-binding protein VV1_2377 PF05724 Thiopurine S-methyltransferase (TPMT) VV1_2378 PF02222 ATP-grasp domain VV1_2379 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV1_2379 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VV1_2382 PF13488 Glycine zipper VV1_2382 PF00691 OmpA family VV1_2385 PF02913 FAD linked oxidases, C-terminal domain VV1_2385 PF01565 FAD binding domain VV1_2385 PF13183 4Fe-4S dicluster domain VV1_2387 PF00089 Trypsin VV1_2389 PF00221 Aromatic amino acid lyase VV1_2390 PF01175 Urocanase Rossmann-like domain VV1_2390 PF17392 Urocanase C-terminal domain VV1_2390 PF17391 Urocanase N-terminal domain VV1_2391 PF00491 Arginase family VV1_2392 PF01979 Amidohydrolase family VV1_2393 PF00392 Bacterial regulatory proteins, gntR family VV1_2393 PF07702 UTRA domain VV1_2395 PF07070 SpoOM protein VV1_2397 PF03129 Anticodon binding domain VV1_2397 PF02824 TGS domain VV1_2397 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV1_2397 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV1_2398 PF05198 Translation initiation factor IF-3, N-terminal domain VV1_2398 PF00707 Translation initiation factor IF-3, C-terminal domain VV1_2399 PF01632 Ribosomal protein L35 VV1_2400 PF00453 Ribosomal protein L20 VV1_2401 PF13495 Phage integrase, N-terminal SAM-like domain VV1_2401 PF00589 Phage integrase family VV1_2415 PF01872 RibD C-terminal domain VV1_2415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV1_2416 PF12464 Maltose acetyltransferase VV1_2416 PF00132 Bacterial transferase hexapeptide (six repeats) VV1_2416 PF14602 Hexapeptide repeat of succinyl-transferase VV1_2431 PF13302 Acetyltransferase (GNAT) domain VV1_2450 PF14338 Mrr N-terminal domain VV1_2450 PF04471 Restriction endonuclease VV1_2462 PF00589 Phage integrase family VV1_2465 PF05840 Bacteriophage replication gene A protein (GPA) VV1_2475 PF13302 Acetyltransferase (GNAT) domain VV1_2482 PF13302 Acetyltransferase (GNAT) domain VV1_2487 PF00877 NlpC/P60 family VV1_2496 PF13302 Acetyltransferase (GNAT) domain VV1_2506 PF13302 Acetyltransferase (GNAT) domain VV1_2509 PF01810 LysE type translocator VV1_2511 PF13291 ACT domain VV1_2511 PF02824 TGS domain VV1_2511 PF04607 Region found in RelA / SpoT proteins VV1_2514 PF13302 Acetyltransferase (GNAT) domain VV1_2524 PF13302 Acetyltransferase (GNAT) domain VV1_2525 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VV1_2526 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VV1_2534 PF14552 Tautomerase enzyme VV1_2540 PF00583 Acetyltransferase (GNAT) family VV1_2540 PF13508 Acetyltransferase (GNAT) domain VV1_2551 PF00665 Integrase core domain VV1_2551 PF13333 Integrase core domain VV1_2551 PF13276 HTH-like domain VV1_2559 PF01554 MatE VV1_2560 PF00677 Lumazine binding domain VV1_2563 PF01339 CheB methylesterase VV1_2563 PF00072 Response regulator receiver domain VV1_2564 PF05230 MASE2 domain VV1_2564 PF00990 Diguanylate cyclase, GGDEF domain VV1_2566 PF00877 NlpC/P60 family VV1_2567 PF17202 Single cache domain 3 VV1_2567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2567 PF00672 HAMP domain VV1_2570 PF00480 ROK family VV1_2572 PF00994 Probable molybdopterin binding domain VV1_2572 PF03454 MoeA C-terminal region (domain IV) VV1_2572 PF03453 MoeA N-terminal region (domain I and II) VV1_2573 PF12804 MobA-like NTP transferase domain VV1_2574 PF00005 ABC transporter VV1_2574 PF08402 TOBE domain VV1_2575 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2576 PF12849 PBP superfamily domain VV1_2577 PF02954 Bacterial regulatory protein, Fis family VV1_2577 PF00072 Response regulator receiver domain VV1_2577 PF00158 Sigma-54 interaction domain VV1_2578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2578 PF00512 His Kinase A (phospho-acceptor) domain VV1_2578 PF00989 PAS fold VV1_2581 PF12848 ABC transporter VV1_2581 PF00005 ABC transporter VV1_2583 PF00672 HAMP domain VV1_2583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2583 PF02743 Cache domain VV1_2584 PF02634 FdhD/NarQ family VV1_2590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV1_2590 PF01568 Molydopterin dinucleotide binding domain VV1_2590 PF00384 Molybdopterin oxidoreductase VV1_2591 PF13247 4Fe-4S dicluster domain VV1_2598 PF00909 Ammonium Transporter Family VV1_2599 PF02146 Sir2 family VV1_2600 PF13416 Bacterial extracellular solute-binding protein VV1_2601 PF13416 Bacterial extracellular solute-binding protein VV1_2602 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2603 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2604 PF08402 TOBE domain VV1_2604 PF00005 ABC transporter VV1_2606 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV1_2608 PF01171 PP-loop family VV1_2609 PF00582 Universal stress protein family VV1_2610 PF00027 Cyclic nucleotide-binding domain VV1_2610 PF13545 Crp-like helix-turn-helix domain VV1_2614 PF00403 Heavy-metal-associated domain VV1_2617 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV1_2617 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VV1_2620 PF00115 Cytochrome C and Quinol oxidase polypeptide I VV1_2622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2622 PF00512 His Kinase A (phospho-acceptor) domain VV1_2622 PF09308 LuxQ, periplasmic VV1_2622 PF00072 Response regulator receiver domain VV1_2627 PF17414 MatP C-terminal ribbon-helix-helix domain VV1_2627 PF06303 MatP N-terminal domain VV1_2628 PF13654 AAA domain VV1_2628 PF05362 Lon protease (S16) C-terminal proteolytic domain VV1_2629 PF07977 FabA-like domain VV1_2630 PF04957 Ribosome modulation factor VV1_2635 PF10672 S-adenosylmethionine-dependent methyltransferase VV1_2635 PF02926 THUMP domain VV1_2635 PF01170 Putative RNA methylase family UPF0020 VV1_2636 PF07126 Cell-division protein ZapC VV1_2637 PF01180 Dihydroorotate dehydrogenase VV1_2639 PF05088 Bacterial NAD-glutamate dehydrogenase VV1_2641 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VV1_2641 PF01433 Peptidase family M1 domain VV1_2641 PF11940 Domain of unknown function (DUF3458) Ig-like fold VV1_2643 PF11818 C-terminal domain of tail specific protease (DUF3340) VV1_2643 PF17804 Tail specific protease N-terminal domain VV1_2643 PF03572 Peptidase family S41 VV1_2643 PF00595 PDZ domain VV1_2644 PF04352 ProQ/FINO family VV1_2644 PF17516 ProQ C-terminal domain VV1_2645 PF13185 GAF domain VV1_2646 PF00005 ABC transporter VV1_2646 PF00664 ABC transporter transmembrane region VV1_2647 PF04403 Paraquat-inducible protein A VV1_2648 PF02470 MlaD protein VV1_2649 PF01189 16S rRNA methyltransferase RsmB/F VV1_2649 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VV1_2649 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VV1_2650 PF17783 CvfB-like winged helix domain VV1_2650 PF13509 S1 domain VV1_2654 PF00793 DAHP synthetase I family VV1_2655 PF04461 Protein of unknown function (DUF520) VV1_2656 PF00990 Diguanylate cyclase, GGDEF domain VV1_2656 PF17158 Membrane-associated sensor, integral membrane domain VV1_2657 PF01068 ATP dependent DNA ligase domain VV1_2657 PF14743 DNA ligase OB-like domain VV1_2658 PF01740 STAS domain VV1_2660 PF10531 SLBB domain VV1_2660 PF02563 Polysaccharide biosynthesis/export protein VV1_2663 PF01627 Hpt domain VV1_2663 PF17149 Periplasmic sensor domain found in signal transduction proteins VV1_2663 PF00512 His Kinase A (phospho-acceptor) domain VV1_2663 PF00672 HAMP domain VV1_2663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2663 PF00072 Response regulator receiver domain VV1_2664 PF00158 Sigma-54 interaction domain VV1_2664 PF02954 Bacterial regulatory protein, Fis family VV1_2664 PF00072 Response regulator receiver domain VV1_2673 PF00534 Glycosyl transferases group 1 VV1_2673 PF13439 Glycosyltransferase Family 4 VV1_2675 PF02397 Bacterial sugar transferase VV1_2682 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VV1_2682 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV1_2683 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VV1_2684 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VV1_2684 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VV1_2685 PF00072 Response regulator receiver domain VV1_2685 PF12431 Transcriptional regulator VV1_2686 PF00989 PAS fold VV1_2686 PF17203 Single cache domain 3 VV1_2686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2686 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VV1_2689 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_2695 PF01235 Sodium:alanine symporter family VV1_2698 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VV1_2699 PF01553 Acyltransferase VV1_2700 PF13237 4Fe-4S dicluster domain VV1_2700 PF12801 4Fe-4S binding domain VV1_2701 PF12800 4Fe-4S binding domain VV1_2701 PF12838 4Fe-4S dicluster domain VV1_2702 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV1_2702 PF10414 Sirohaem synthase dimerisation region VV1_2702 PF14824 Sirohaem biosynthesis protein central VV1_2703 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV1_2704 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2705 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2706 PF00005 ABC transporter VV1_2707 PF01027 Inhibitor of apoptosis-promoting Bax1 VV1_2710 PF04358 DsrC like protein VV1_2711 PF00708 Acylphosphatase VV1_2712 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2712 PF00672 HAMP domain VV1_2712 PF02743 Cache domain VV1_2713 PF17785 PUA-like domain VV1_2713 PF10672 S-adenosylmethionine-dependent methyltransferase VV1_2714 PF10672 S-adenosylmethionine-dependent methyltransferase VV1_2714 PF17785 PUA-like domain VV1_2719 PF17151 Periplasmic sensor domain VV1_2719 PF00990 Diguanylate cyclase, GGDEF domain VV1_2720 PF06508 Queuosine biosynthesis protein QueC VV1_2721 PF04055 Radical SAM superfamily VV1_2723 PF00672 HAMP domain VV1_2723 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2723 PF02743 Cache domain VV1_2725 PF00089 Trypsin VV1_2728 PF13193 AMP-binding enzyme C-terminal domain VV1_2728 PF00501 AMP-binding enzyme VV1_2728 PF16177 Acetyl-coenzyme A synthetase N-terminus VV1_2729 PF04303 PrpF protein VV1_2730 PF00694 Aconitase C-terminal domain VV1_2730 PF00330 Aconitase family (aconitate hydratase) VV1_2731 PF00285 Citrate synthase, C-terminal domain VV1_2739 PF01970 Tripartite tricarboxylate transporter TctA family VV1_2744 PF00072 Response regulator receiver domain VV1_2744 PF00196 Bacterial regulatory proteins, luxR family VV1_2746 PF01925 Sulfite exporter TauE/SafE VV1_2747 PF02743 Cache domain VV1_2747 PF00672 HAMP domain VV1_2747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2748 PF00072 Response regulator receiver domain VV1_2749 PF13416 Bacterial extracellular solute-binding protein VV1_2750 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2751 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2752 PF00005 ABC transporter VV1_2752 PF17912 MalK OB fold domain VV1_2753 PF00455 DeoR C terminal sensor domain VV1_2753 PF08220 DeoR-like helix-turn-helix domain VV1_2754 PF03009 Glycerophosphoryl diester phosphodiesterase family VV1_2755 PF00141 Peroxidase VV1_2757 PF00313 'Cold-shock' DNA-binding domain VV1_2759 PF00072 Response regulator receiver domain VV1_2759 PF00990 Diguanylate cyclase, GGDEF domain VV1_2765 PF02798 Glutathione S-transferase, N-terminal domain VV1_2765 PF14497 Glutathione S-transferase, C-terminal domain VV1_2767 PF04209 homogentisate 1,2-dioxygenase VV1_2768 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV1_2769 PF07687 Peptidase dimerisation domain VV1_2769 PF01546 Peptidase family M20/M25/M40 VV1_2771 PF02872 5'-nucleotidase, C-terminal domain VV1_2771 PF00149 Calcineurin-like phosphoesterase VV1_2772 PF04204 Homoserine O-succinyltransferase VV1_2774 PF05971 RNA methyltransferase VV1_2775 PF01863 Protein of unknown function DUF45 VV1_2777 PF03466 LysR substrate binding domain VV1_2777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_2778 PF07690 Major Facilitator Superfamily VV1_2781 PF00005 ABC transporter VV1_2782 PF01032 FecCD transport family VV1_2783 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VV1_2786 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VV1_2787 PF02654 Cobalamin-5-phosphate synthase VV1_2788 PF02277 Phosphoribosyltransferase VV1_2792 PF08411 Exonuclease C-terminal VV1_2792 PF00929 Exonuclease VV1_2793 PF03788 LrgA family VV1_2794 PF04172 LrgB-like family VV1_2797 PF01259 SAICAR synthetase VV1_2799 PF02253 Phospholipase A1 VV1_2800 PF00270 DEAD/DEAH box helicase VV1_2800 PF04408 Helicase associated domain (HA2) VV1_2800 PF00271 Helicase conserved C-terminal domain VV1_2800 PF08482 ATP-dependent helicase C-terminal VV1_2801 PF03949 Malic enzyme, NAD binding domain VV1_2801 PF00390 Malic enzyme, N-terminal domain VV1_2802 PF02698 DUF218 domain VV1_2805 PF00939 Sodium:sulfate symporter transmembrane region VV1_2806 PF00990 Diguanylate cyclase, GGDEF domain VV1_2806 PF00072 Response regulator receiver domain VV1_2808 PF00266 Aminotransferase class-V VV1_2810 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_2811 PF00664 ABC transporter transmembrane region VV1_2811 PF00005 ABC transporter VV1_2812 PF00664 ABC transporter transmembrane region VV1_2812 PF00005 ABC transporter VV1_2813 PF00266 Aminotransferase class-V VV1_2815 PF00989 PAS fold VV1_2815 PF13426 PAS domain VV1_2815 PF00512 His Kinase A (phospho-acceptor) domain VV1_2815 PF13426 PAS domain VV1_2815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2815 PF00989 PAS fold VV1_2815 PF13188 PAS domain VV1_2815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2815 PF00512 His Kinase A (phospho-acceptor) domain VV1_2815 PF13188 PAS domain VV1_2820 PF04993 TfoX N-terminal domain VV1_2820 PF04994 TfoX C-terminal domain VV1_2822 PF03956 Lysine exporter LysO VV1_2824 PF00282 Pyridoxal-dependent decarboxylase conserved domain VV1_2825 PF01418 Helix-turn-helix domain, rpiR family VV1_2825 PF01380 SIS domain VV1_2826 PF00465 Iron-containing alcohol dehydrogenase VV1_2827 PF00462 Glutaredoxin VV1_2828 PF06826 Predicted Permease Membrane Region VV1_2828 PF02080 TrkA-C domain VV1_2829 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VV1_2829 PF12241 Trans-2-enoyl-CoA reductase catalytic region VV1_2829 PF07055 Enoyl reductase FAD binding domain VV1_2831 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV1_2831 PF02770 Acyl-CoA dehydrogenase, middle domain VV1_2831 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV1_2831 PF09317 Domain of unknown function (DUF1974) VV1_2833 PF06965 Na+/H+ antiporter 1 VV1_2838 PF00005 ABC transporter VV1_2839 PF11066 Protein of unknown function (DUF2867) VV1_2839 PF13460 NAD(P)H-binding VV1_2840 PF00999 Sodium/hydrogen exchanger family VV1_2842 PF07690 Major Facilitator Superfamily VV1_2843 PF00849 RNA pseudouridylate synthase VV1_2843 PF01479 S4 domain VV1_2845 PF04851 Type III restriction enzyme, res subunit VV1_2845 PF00271 Helicase conserved C-terminal domain VV1_2847 PF00486 Transcriptional regulatory protein, C terminal VV1_2847 PF00072 Response regulator receiver domain VV1_2848 PF00672 HAMP domain VV1_2848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_2848 PF00512 His Kinase A (phospho-acceptor) domain VV1_2850 PF01386 Ribosomal L25p family VV1_2854 PF03707 Bacterial signalling protein N terminal repeat VV1_2854 PF00990 Diguanylate cyclase, GGDEF domain VV1_2854 PF00563 EAL domain VV1_2857 PF06945 Protein of unknown function (DUF1289) VV1_2859 PF13416 Bacterial extracellular solute-binding protein VV1_2860 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2861 PF00005 ABC transporter VV1_2862 PF01066 CDP-alcohol phosphatidyltransferase VV1_2863 PF01590 GAF domain VV1_2863 PF00158 Sigma-54 interaction domain VV1_2864 PF03063 Prismane/CO dehydrogenase family VV1_2865 PF00175 Oxidoreductase NAD-binding domain VV1_2865 PF00111 2Fe-2S iron-sulfur cluster binding domain VV1_2865 PF00970 Oxidoreductase FAD-binding domain VV1_2867 PF00849 RNA pseudouridylate synthase VV1_2868 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_2868 PF00672 HAMP domain VV1_2868 PF12729 Four helix bundle sensory module for signal transduction VV1_2869 PF00209 Sodium:neurotransmitter symporter family VV1_2871 PF13091 PLD-like domain VV1_2871 PF13396 Phospholipase_D-nuclease N-terminal VV1_2872 PF01053 Cys/Met metabolism PLP-dependent enzyme VV1_2873 PF03352 Methyladenine glycosylase VV1_2874 PF00873 AcrB/AcrD/AcrF family VV1_2875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_2877 PF04024 PspC domain VV1_2878 PF06667 Phage shock protein B VV1_2879 PF04012 PspA/IM30 family VV1_2880 PF02954 Bacterial regulatory protein, Fis family VV1_2880 PF00158 Sigma-54 interaction domain VV1_2881 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_2882 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2883 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_2883 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2884 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_2884 PF00005 ABC transporter VV1_2885 PF00005 ABC transporter VV1_2888 PF02833 DHHA2 domain VV1_2888 PF01368 DHH family VV1_2890 PF16875 Glycosyl hydrolase family 36 N-terminal domain VV1_2890 PF16874 Glycosyl hydrolase family 36 C-terminal domain VV1_2895 PF00384 Molybdopterin oxidoreductase VV1_2895 PF01568 Molydopterin dinucleotide binding domain VV1_2895 PF18364 Molybdopterin oxidoreductase N-terminal domain VV1_2896 PF03264 NapC/NirT cytochrome c family, N-terminal region VV1_2897 PF06796 Periplasmic nitrate reductase protein NapE VV1_2898 PF03649 Uncharacterised protein family (UPF0014) VV1_2900 PF01226 Formate/nitrite transporter VV1_2904 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_2904 PF03466 LysR substrate binding domain VV1_2905 PF01370 NAD dependent epimerase/dehydratase family VV1_2907 PF00265 Thymidine kinase VV1_2908 PF01406 tRNA synthetases class I (C) catalytic domain VV1_2908 PF09190 DALR domain VV1_2909 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV1_2910 PF00149 Calcineurin-like phosphoesterase VV1_2911 PF08668 HDOD domain VV1_2911 PF00563 EAL domain VV1_2912 PF02810 SEC-C motif VV1_2913 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VV1_2913 PF01502 Phosphoribosyl-AMP cyclohydrolase VV1_2914 PF00977 Histidine biosynthesis protein VV1_2915 PF00977 Histidine biosynthesis protein VV1_2916 PF00117 Glutamine amidotransferase class-I VV1_2917 PF00475 Imidazoleglycerol-phosphate dehydratase VV1_2917 PF08645 Polynucleotide kinase 3 phosphatase VV1_2918 PF00155 Aminotransferase class I and II VV1_2919 PF00815 Histidinol dehydrogenase VV1_2920 PF08029 HisG, C-terminal domain VV1_2920 PF01634 ATP phosphoribosyltransferase VV1_2922 PF03553 Na+/H+ antiporter family VV1_2923 PF00816 H-NS histone family VV1_2924 PF00294 pfkB family carbohydrate kinase VV1_2927 PF04356 Protein of unknown function (DUF489) VV1_2928 PF00206 Lyase VV1_2928 PF08328 Adenylosuccinate lyase C-terminal VV1_2935 PF00106 short chain dehydrogenase VV1_2938 PF01435 Peptidase family M48 VV1_2941 PF08241 Methyltransferase domain VV1_2942 PF00155 Aminotransferase class I and II VV1_2943 PF04055 Radical SAM superfamily VV1_2943 PF06968 Biotin and Thiamin Synthesis associated domain VV1_2946 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV1_2946 PF02403 Seryl-tRNA synthetase N-terminal domain VV1_2947 PF00004 ATPase family associated with various cellular activities (AAA) VV1_2947 PF16193 AAA C-terminal domain VV1_2947 PF12002 MgsA AAA+ ATPase C terminal VV1_2949 PF03548 Outer membrane lipoprotein carrier protein LolA VV1_2950 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VV1_2950 PF01580 FtsK/SpoIIIE family VV1_2950 PF09397 Ftsk gamma domain VV1_2950 PF17854 FtsK alpha domain VV1_2951 PF01037 Lrp/AsnC ligand binding domain VV1_2952 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VV1_2952 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VV1_2954 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV1_2954 PF03466 LysR substrate binding domain VV1_2956 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VV1_2958 PF13006 Insertion element 4 transposase N-terminal VV1_2958 PF01609 Transposase DDE domain VV1_2959 PF13006 Insertion element 4 transposase N-terminal VV1_2959 PF01609 Transposase DDE domain VV1_2962 PF00753 Metallo-beta-lactamase superfamily VV1_2963 PF05951 Bacterial protein of unknown function (DUF882) VV1_2964 PF01471 Putative peptidoglycan binding domain VV1_2964 PF03734 L,D-transpeptidase catalytic domain VV1_2969 PF01609 Transposase DDE domain VV1_2969 PF13006 Insertion element 4 transposase N-terminal VV1_2972 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_2972 PF00005 ABC transporter VV1_2973 PF00005 ABC transporter VV1_2973 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_2974 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_2975 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_2975 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2976 PF00528 Binding-protein-dependent transport system inner membrane component VV1_2977 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VV1_2978 PF18073 Rubredoxin metal binding domain VV1_2979 PF06305 Lipopolysaccharide assembly protein A domain VV1_2980 PF00216 Bacterial DNA-binding protein VV1_2982 PF00575 S1 RNA binding domain VV1_2983 PF02224 Cytidylate kinase VV1_2985 PF01343 Peptidase family S49 VV1_2985 PF08496 Peptidase family S49 N-terminal VV1_2986 PF00106 short chain dehydrogenase VV1_2989 PF02811 PHP domain VV1_2989 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV1_2989 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV1_2989 PF14579 Helix-hairpin-helix motif VV1_2989 PF01336 OB-fold nucleic acid binding domain VV1_2990 PF00072 Response regulator receiver domain VV1_2990 PF01584 CheW-like domain VV1_2991 PF00480 ROK family VV1_2992 PF02887 Pyruvate kinase, alpha/beta domain VV1_2992 PF00224 Pyruvate kinase, barrel domain VV1_2993 PF01734 Patatin-like phospholipase VV1_2996 PF00209 Sodium:neurotransmitter symporter family VV1_2999 PF00367 phosphotransferase system, EIIB VV1_2999 PF02378 Phosphotransferase system, EIIC VV1_3000 PF01026 TatD related DNase VV1_3001 PF09115 DNA polymerase III, delta subunit, C terminal VV1_3002 PF02223 Thymidylate kinase VV1_3004 PF02618 YceG-like family VV1_3005 PF01063 Amino-transferase class IV VV1_3007 PF02801 Beta-ketoacyl synthase, C-terminal domain VV1_3007 PF00109 Beta-ketoacyl synthase, N-terminal domain VV1_3008 PF00550 Phosphopantetheine attachment site VV1_3010 PF00698 Acyl transferase domain VV1_3011 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VV1_3011 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VV1_3012 PF02504 Fatty acid synthesis protein VV1_3013 PF01783 Ribosomal L32p protein family VV1_3014 PF02620 Large ribosomal RNA subunit accumulation protein YceD VV1_3015 PF02545 Maf-like protein VV1_3016 PF01479 S4 domain VV1_3016 PF00849 RNA pseudouridylate synthase VV1_3018 PF10150 Ribonuclease E/G family VV1_3018 PF12111 Polyribonucleotide phosphorylase C terminal VV1_3018 PF00575 S1 RNA binding domain VV1_3020 PF01740 STAS domain VV1_3020 PF00916 Sulfate permease family VV1_3021 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV1_3022 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VV1_3022 PF12557 Cob(I)alamin adenosyltransferase N terminal VV1_3025 PF00485 Phosphoribulokinase / Uridine kinase family VV1_3027 PF10609 NUBPL iron-transfer P-loop NTPase VV1_3028 PF01588 Putative tRNA binding domain VV1_3028 PF09334 tRNA synthetases class I (M) VV1_3030 PF08534 Redoxin VV1_3031 PF01578 Cytochrome C assembly protein VV1_3031 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV1_3032 PF03916 Polysulphide reductase, NrfD VV1_3033 PF13247 4Fe-4S dicluster domain VV1_3035 PF02335 Cytochrome c552 VV1_3038 PF00521 DNA gyrase/topoisomerase IV, subunit A VV1_3038 PF03989 DNA gyrase C-terminal domain, beta-propeller VV1_3041 PF03477 ATP cone domain VV1_3041 PF02867 Ribonucleotide reductase, barrel domain VV1_3041 PF00317 Ribonucleotide reductase, all-alpha domain VV1_3042 PF00268 Ribonucleotide reductase, small chain VV1_3044 PF00994 Probable molybdopterin binding domain VV1_3044 PF02464 Competence-damaged protein VV1_3049 PF16653 Saccharopine dehydrogenase C-terminal domain VV1_3049 PF03435 Saccharopine dehydrogenase NADP binding domain VV1_3050 PF00202 Aminotransferase class-III VV1_3052 PF01066 CDP-alcohol phosphatidyltransferase VV1_3053 PF08459 UvrC Helix-hairpin-helix N-terminal VV1_3053 PF02151 UvrB/uvrC motif VV1_3053 PF01541 GIY-YIG catalytic domain VV1_3054 PF00196 Bacterial regulatory proteins, luxR family VV1_3054 PF00072 Response regulator receiver domain VV1_3055 PF00136 DNA polymerase family B VV1_3055 PF03104 DNA polymerase family B, exonuclease domain VV1_3056 PF08448 PAS fold VV1_3056 PF08447 PAS fold VV1_3056 PF00990 Diguanylate cyclase, GGDEF domain VV1_3056 PF00563 EAL domain VV1_3058 PF08207 Elongation factor P (EF-P) KOW-like domain VV1_3058 PF09285 Elongation factor P, C-terminal VV1_3058 PF01132 Elongation factor P (EF-P) OB domain VV1_3059 PF04269 Protein of unknown function, DUF440 VV1_3060 PF00849 RNA pseudouridylate synthase VV1_3060 PF01479 S4 domain VV1_3062 PF01300 Telomere recombination VV1_3063 PF02811 PHP domain VV1_3064 PF04715 Anthranilate synthase component I, N terminal region VV1_3064 PF00425 chorismate binding enzyme VV1_3065 PF00117 Glutamine amidotransferase class-I VV1_3066 PF02885 Glycosyl transferase family, helical bundle domain VV1_3066 PF00591 Glycosyl transferase family, a/b domain VV1_3067 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VV1_3067 PF00218 Indole-3-glycerol phosphate synthase VV1_3068 PF00291 Pyridoxal-phosphate dependent enzyme VV1_3069 PF00290 Tryptophan synthase alpha chain VV1_3070 PF00375 Sodium:dicarboxylate symporter family VV1_3073 PF04279 Intracellular septation protein A VV1_3074 PF03061 Thioesterase superfamily VV1_3075 PF03795 YCII-related domain VV1_3077 PF13409 Glutathione S-transferase, N-terminal domain VV1_3078 PF00005 ABC transporter VV1_3078 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_3079 PF00005 ABC transporter VV1_3079 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV1_3080 PF12911 N-terminal TM domain of oligopeptide transport permease C VV1_3080 PF00528 Binding-protein-dependent transport system inner membrane component VV1_3081 PF00528 Binding-protein-dependent transport system inner membrane component VV1_3082 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV1_3084 PF02391 MoaE protein VV1_3085 PF02597 ThiS family VV1_3086 PF01967 MoaC family VV1_3087 PF00994 Probable molybdopterin binding domain VV1_3088 PF04055 Radical SAM superfamily VV1_3088 PF06463 Molybdenum Cofactor Synthesis C VV1_3089 PF01933 Uncharacterised protein family UPF0052 VV1_3090 PF01627 Hpt domain VV1_3091 PF00072 Response regulator receiver domain VV1_3091 PF02954 Bacterial regulatory protein, Fis family VV1_3091 PF00158 Sigma-54 interaction domain VV1_3092 PF00271 Helicase conserved C-terminal domain VV1_3092 PF04851 Type III restriction enzyme, res subunit VV1_3092 PF17757 UvrB interaction domain VV1_3092 PF12344 Ultra-violet resistance protein B VV1_3092 PF02151 UvrB/uvrC motif VV1_3093 PF02508 Rnf-Nqr subunit, membrane protein VV1_3094 PF04060 Putative Fe-S cluster VV1_3095 PF12838 4Fe-4S dicluster domain VV1_3095 PF13375 RnfC Barrel sandwich hybrid domain VV1_3095 PF10531 SLBB domain VV1_3095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VV1_3096 PF03116 NQR2, RnfD, RnfE family VV1_3097 PF04205 FMN-binding domain VV1_3098 PF02508 Rnf-Nqr subunit, membrane protein VV1_3099 PF00633 Helix-hairpin-helix motif VV1_3099 PF00730 HhH-GPD superfamily base excision DNA repair protein VV1_3099 PF10576 Iron-sulfur binding domain of endonuclease III VV1_3100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV1_3101 PF10952 Protein of unknown function (DUF2753) VV1_3102 PF18393 MotY N-terminal domain VV1_3102 PF00691 OmpA family VV1_3103 PF00929 Exonuclease VV1_3104 PF03553 Na+/H+ antiporter family VV1_3104 PF13726 Na+-H+ antiporter family VV1_3106 PF00462 Glutaredoxin VV1_3107 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV1_3107 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV1_3111 PF00465 Iron-containing alcohol dehydrogenase VV1_3111 PF00171 Aldehyde dehydrogenase family VV1_3112 PF01914 MarC family integral membrane protein VV1_3113 PF00027 Cyclic nucleotide-binding domain VV1_3113 PF00520 Ion transport protein VV1_3115 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV1_3115 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV1_3117 PF03553 Na+/H+ antiporter family VV1_3120 PF04245 37-kD nucleoid-associated bacterial protein VV1_3121 PF07208 Protein of unknown function (DUF1414) VV1_3122 PF11893 Domain of unknown function (DUF3413) VV1_3122 PF00884 Sulfatase VV1_3123 PF02254 TrkA-N domain VV1_3123 PF02080 TrkA-C domain VV1_3124 PF02386 Cation transport protein VV1_3125 PF04074 YhcH/YjgK/YiaL VV1_3126 PF13091 PLD-like domain VV1_3127 PF00990 Diguanylate cyclase, GGDEF domain VV1_3127 PF00072 Response regulator receiver domain VV1_3128 PF00512 His Kinase A (phospho-acceptor) domain VV1_3128 PF09308 LuxQ, periplasmic VV1_3128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_3128 PF00072 Response regulator receiver domain VV1_3129 PF00850 Histone deacetylase domain VV1_3130 PF01131 DNA topoisomerase VV1_3130 PF01751 Toprim domain VV1_3131 PF00881 Nitroreductase family VV1_3132 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV1_3132 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VV1_3133 PF01343 Peptidase family S49 VV1_3135 PF17763 Glutaminase/Asparaginase C-terminal domain VV1_3135 PF00710 Asparaginase, N-terminal VV1_3136 PF07023 Protein of unknown function (DUF1315) VV1_3139 PF01641 SelR domain VV1_3140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_3140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV1_3141 PF01263 Aldose 1-epimerase VV1_3142 PF00672 HAMP domain VV1_3142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV1_3142 PF02743 Cache domain VV1_3145 PF07969 Amidohydrolase family VV1_3146 PF00563 EAL domain VV1_3146 PF00990 Diguanylate cyclase, GGDEF domain VV1_3146 PF13426 PAS domain VV1_3148 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VV1_3149 PF09619 Type III secretion system lipoprotein chaperone (YscW) VV1_3152 PF13404 AsnC-type helix-turn-helix domain VV1_3152 PF01037 Lrp/AsnC ligand binding domain VV1_3153 PF00291 Pyridoxal-phosphate dependent enzyme VV1_3156 PF00873 AcrB/AcrD/AcrF family VV1_3157 PF00529 HlyD membrane-fusion protein of T1SS VV1_3157 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_3165 PF07690 Major Facilitator Superfamily VV1_3166 PF03601 Conserved hypothetical protein 698 VV1_3168 PF00501 AMP-binding enzyme VV1_3168 PF13193 AMP-binding enzyme C-terminal domain VV1_3169 PF13378 Enolase C-terminal domain-like VV1_3170 PF00378 Enoyl-CoA hydratase/isomerase VV1_3171 PF12697 Alpha/beta hydrolase family VV1_3172 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV1_3172 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV1_3172 PF16582 Middle domain of thiamine pyrophosphate VV1_3173 PF00425 chorismate binding enzyme VV1_3174 PF00155 Aminotransferase class I and II VV1_3178 PF13737 Transposase DDE domain VV1_3180 PF13737 Transposase DDE domain VV1_3182 PF13592 Winged helix-turn helix VV1_3182 PF13358 DDE superfamily endonuclease VV1_3192 PF13358 DDE superfamily endonuclease VV1_3192 PF13592 Winged helix-turn helix VV1_3194 PF02371 Transposase IS116/IS110/IS902 family VV1_3194 PF01548 Transposase VV1_3195 PF00529 HlyD membrane-fusion protein of T1SS VV1_3195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV1_3197 PF13091 PLD-like domain VV1_3201 PF00486 Transcriptional regulatory protein, C terminal VV1_3201 PF00072 Response regulator receiver domain VV1_3202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV1_3202 PF00072 Response regulator receiver domain VV1_3202 PF00512 His Kinase A (phospho-acceptor) domain VV1_3202 PF09456 RcsC Alpha-Beta-Loop (ABL) VV1_3203 PF03707 Bacterial signalling protein N terminal repeat VV1_3203 PF00990 Diguanylate cyclase, GGDEF domain VV1_3203 PF00563 EAL domain VV1_3205 PF00144 Beta-lactamase VV1_3208 PF00400 WD domain, G-beta repeat VV1_3222 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VV1_3255 PF13358 DDE superfamily endonuclease VV1_3255 PF13592 Winged helix-turn helix VV2_0001 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0002 PF00005 ABC transporter VV2_0002 PF00571 CBS domain VV2_0003 PF04224 Protein of unknown function, DUF417 VV2_0004 PF01609 Transposase DDE domain VV2_0004 PF13006 Insertion element 4 transposase N-terminal VV2_0005 PF02896 PEP-utilising enzyme, TIM barrel domain VV2_0005 PF00391 PEP-utilising enzyme, mobile domain VV2_0005 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VV2_0006 PF03618 Kinase/pyrophosphorylase VV2_0010 PF01266 FAD dependent oxidoreductase VV2_0010 PF04324 BFD-like [2Fe-2S] binding domain VV2_0011 PF00890 FAD binding domain VV2_0012 PF13183 4Fe-4S dicluster domain VV2_0012 PF02754 Cysteine-rich domain VV2_0013 PF13419 Haloacid dehalogenase-like hydrolase VV2_0015 PF02016 LD-carboxypeptidase N-terminal domain VV2_0015 PF17676 LD-carboxypeptidase C-terminal domain VV2_0016 PF07995 Glucose / Sorbosone dehydrogenase VV2_0019 PF00465 Iron-containing alcohol dehydrogenase VV2_0020 PF00012 Hsp70 protein VV2_0022 PF00581 Rhodanese-like domain VV2_0027 PF13533 Biotin-lipoyl like VV2_0029 PF00873 AcrB/AcrD/AcrF family VV2_0031 PF13194 Domain of unknown function (DUF4010) VV2_0032 PF07504 Fungalysin/Thermolysin Propeptide Motif VV2_0032 PF01447 Thermolysin metallopeptidase, catalytic domain VV2_0032 PF02868 Thermolysin metallopeptidase, alpha-helical domain VV2_0032 PF03413 Peptidase propeptide and YPEB domain VV2_0037 PF03222 Tryptophan/tyrosine permease family VV2_0038 PF00149 Calcineurin-like phosphoesterase VV2_0042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0042 PF02743 Cache domain VV2_0042 PF00672 HAMP domain VV2_0044 PF18416 N-acetylglucosamine binding protein domain 2 VV2_0044 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VV2_0045 PF00892 EamA-like transporter family VV2_0048 PF01569 PAP2 superfamily VV2_0050 PF03606 C4-dicarboxylate anaerobic carrier VV2_0051 PF00171 Aldehyde dehydrogenase family VV2_0052 PF00034 Cytochrome c VV2_0053 PF01212 Beta-eliminating lyase VV2_0055 PF12592 Protein of unknown function (DUF3763) VV2_0055 PF07728 AAA domain (dynein-related subfamily) VV2_0055 PF17868 AAA lid domain VV2_0056 PF05762 VWA domain containing CoxE-like protein VV2_0057 PF04237 YjbR VV2_0061 PF05025 RbsD / FucU transport protein family VV2_0062 PF00005 ABC transporter VV2_0063 PF02653 Branched-chain amino acid transport system / permease component VV2_0064 PF13407 Periplasmic binding protein domain VV2_0065 PF00294 pfkB family carbohydrate kinase VV2_0066 PF00356 Bacterial regulatory proteins, lacI family VV2_0068 PF01584 CheW-like domain VV2_0068 PF00072 Response regulator receiver domain VV2_0070 PF00583 Acetyltransferase (GNAT) family VV2_0071 PF01926 50S ribosome-binding GTPase VV2_0072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0072 PF12729 Four helix bundle sensory module for signal transduction VV2_0072 PF00672 HAMP domain VV2_0073 PF08678 Rsbr N terminal VV2_0073 PF01740 STAS domain VV2_0075 PF13581 Histidine kinase-like ATPase domain VV2_0077 PF00072 Response regulator receiver domain VV2_0077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0077 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV2_0077 PF00672 HAMP domain VV2_0077 PF01627 Hpt domain VV2_0077 PF00512 His Kinase A (phospho-acceptor) domain VV2_0078 PF00072 Response regulator receiver domain VV2_0079 PF00149 Calcineurin-like phosphoesterase VV2_0079 PF12320 Type 5 capsule protein repressor C-terminal domain VV2_0080 PF13476 AAA domain VV2_0083 PF03466 LysR substrate binding domain VV2_0083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0086 PF13629 Pilus formation protein N terminal region VV2_0086 PF04972 BON domain VV2_0086 PF00263 Bacterial type II and III secretion system protein VV2_0089 PF00437 Type II/IV secretion system protein VV2_0102 PF00939 Sodium:sulfate symporter transmembrane region VV2_0103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0103 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VV2_0103 PF00989 PAS fold VV2_0103 PF17203 Single cache domain 3 VV2_0104 PF12431 Transcriptional regulator VV2_0104 PF00072 Response regulator receiver domain VV2_0105 PF12464 Maltose acetyltransferase VV2_0105 PF00132 Bacterial transferase hexapeptide (six repeats) VV2_0110 PF01032 FecCD transport family VV2_0111 PF01032 FecCD transport family VV2_0112 PF00005 ABC transporter VV2_0113 PF13411 MerR HTH family regulatory protein VV2_0121 PF12805 FUSC-like inner membrane protein yccS VV2_0122 PF13361 UvrD-like helicase C-terminal domain VV2_0122 PF12462 DNA helicase IV / RNA helicase N terminal VV2_0122 PF00580 UvrD/REP helicase N-terminal domain VV2_0123 PF02142 MGS-like domain VV2_0124 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV2_0125 PF00672 HAMP domain VV2_0125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0125 PF00512 His Kinase A (phospho-acceptor) domain VV2_0125 PF01627 Hpt domain VV2_0125 PF00072 Response regulator receiver domain VV2_0130 PF03781 Sulfatase-modifying factor enzyme 1 VV2_0131 PF03264 NapC/NirT cytochrome c family, N-terminal region VV2_0134 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VV2_0135 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB VV2_0136 PF00271 Helicase conserved C-terminal domain VV2_0136 PF00270 DEAD/DEAH box helicase VV2_0136 PF03880 DbpA RNA binding domain VV2_0137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0137 PF09456 RcsC Alpha-Beta-Loop (ABL) VV2_0137 PF00512 His Kinase A (phospho-acceptor) domain VV2_0137 PF00072 Response regulator receiver domain VV2_0138 PF00563 EAL domain VV2_0138 PF00498 FHA domain VV2_0138 PF00990 Diguanylate cyclase, GGDEF domain VV2_0141 PF00990 Diguanylate cyclase, GGDEF domain VV2_0141 PF00563 EAL domain VV2_0141 PF03707 Bacterial signalling protein N terminal repeat VV2_0143 PF12849 PBP superfamily domain VV2_0145 PF12833 Helix-turn-helix domain VV2_0146 PF00773 RNB domain VV2_0146 PF00575 S1 RNA binding domain VV2_0146 PF08206 Ribonuclease B OB domain VV2_0147 PF00270 DEAD/DEAH box helicase VV2_0147 PF03880 DbpA RNA binding domain VV2_0147 PF00271 Helicase conserved C-terminal domain VV2_0148 PF00871 Acetokinase family VV2_0149 PF00884 Sulfatase VV2_0150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0150 PF03466 LysR substrate binding domain VV2_0151 PF00884 Sulfatase VV2_0152 PF04055 Radical SAM superfamily VV2_0152 PF13186 Iron-sulfur cluster-binding domain VV2_0154 PF07726 ATPase family associated with various cellular activities (AAA) VV2_0154 PF17863 AAA lid domain VV2_0157 PF00092 von Willebrand factor type A domain VV2_0160 PF03466 LysR substrate binding domain VV2_0160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0161 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VV2_0162 PF03781 Sulfatase-modifying factor enzyme 1 VV2_0163 PF04055 Radical SAM superfamily VV2_0163 PF13186 Iron-sulfur cluster-binding domain VV2_0165 PF08774 VRR-NUC domain VV2_0165 PF18081 Fanconi anemia-associated nuclease SAP domain VV2_0168 PF01609 Transposase DDE domain VV2_0168 PF13006 Insertion element 4 transposase N-terminal VV2_0169 PF07690 Major Facilitator Superfamily VV2_0170 PF13533 Biotin-lipoyl like VV2_0173 PF03466 LysR substrate binding domain VV2_0173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0174 PF02627 Carboxymuconolactone decarboxylase family VV2_0177 PF00795 Carbon-nitrogen hydrolase VV2_0177 PF02540 NAD synthase VV2_0179 PF00005 ABC transporter VV2_0179 PF00664 ABC transporter transmembrane region VV2_0186 PF02347 Glycine cleavage system P-protein VV2_0187 PF01597 Glycine cleavage H-protein VV2_0188 PF00464 Serine hydroxymethyltransferase VV2_0190 PF01571 Aminomethyltransferase folate-binding domain VV2_0190 PF08669 Glycine cleavage T-protein C-terminal barrel domain VV2_0195 PF00873 AcrB/AcrD/AcrF family VV2_0198 PF02378 Phosphotransferase system, EIIC VV2_0198 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV2_0199 PF00294 pfkB family carbohydrate kinase VV2_0200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV2_0200 PF00381 PTS HPr component phosphorylation site VV2_0201 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV2_0201 PF00356 Bacterial regulatory proteins, lacI family VV2_0206 PF00224 Pyruvate kinase, barrel domain VV2_0206 PF02887 Pyruvate kinase, alpha/beta domain VV2_0207 PF07690 Major Facilitator Superfamily VV2_0209 PF00512 His Kinase A (phospho-acceptor) domain VV2_0209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0209 PF02743 Cache domain VV2_0210 PF00072 Response regulator receiver domain VV2_0210 PF14532 Sigma-54 interaction domain VV2_0210 PF02954 Bacterial regulatory protein, Fis family VV2_0211 PF00465 Iron-containing alcohol dehydrogenase VV2_0212 PF06719 AraC-type transcriptional regulator N-terminus VV2_0212 PF12833 Helix-turn-helix domain VV2_0213 PF06483 Chitinase C VV2_0213 PF00704 Glycosyl hydrolases family 18 VV2_0214 PF00483 Nucleotidyl transferase VV2_0216 PF01268 Formate--tetrahydrofolate ligase VV2_0218 PF00294 pfkB family carbohydrate kinase VV2_0221 PF11849 Domain of unknown function (DUF3369) VV2_0222 PF13419 Haloacid dehalogenase-like hydrolase VV2_0224 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0226 PF04336 Acyl carrier protein phosphodiesterase VV2_0227 PF00270 DEAD/DEAH box helicase VV2_0227 PF00271 Helicase conserved C-terminal domain VV2_0230 PF01292 Prokaryotic cytochrome b561 VV2_0231 PF04264 YceI-like domain VV2_0232 PF01226 Formate/nitrite transporter VV2_0234 PF03466 LysR substrate binding domain VV2_0234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0235 PF06496 Protein of unknown function (DUF1097) VV2_0236 PF11398 Protein of unknown function (DUF2813) VV2_0237 PF00149 Calcineurin-like phosphoesterase VV2_0237 PF02872 5'-nucleotidase, C-terminal domain VV2_0239 PF03741 Integral membrane protein TerC family VV2_0241 PF00892 EamA-like transporter family VV2_0243 PF00491 Arginase family VV2_0248 PF12262 Bacterial virulence factor lipase N-terminal VV2_0249 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV2_0252 PF03061 Thioesterase superfamily VV2_0254 PF12793 Sugar transport-related sRNA regulator N-term VV2_0254 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV2_0256 PF00128 Alpha amylase, catalytic domain VV2_0256 PF16657 Maltogenic Amylase, C-terminal domain VV2_0257 PF03466 LysR substrate binding domain VV2_0257 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0261 PF01556 DnaJ C terminal domain VV2_0261 PF00226 DnaJ domain VV2_0261 PF00684 DnaJ central domain VV2_0264 PF00990 Diguanylate cyclase, GGDEF domain VV2_0264 PF00563 EAL domain VV2_0264 PF00498 FHA domain VV2_0265 PF12241 Trans-2-enoyl-CoA reductase catalytic region VV2_0265 PF07055 Enoyl reductase FAD binding domain VV2_0265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VV2_0266 PF13472 GDSL-like Lipase/Acylhydrolase family VV2_0267 PF00005 ABC transporter VV2_0270 PF01266 FAD dependent oxidoreductase VV2_0270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VV2_0271 PF02626 Carboxyltransferase domain, subdomain A and B VV2_0272 PF02682 Carboxyltransferase domain, subdomain C and D VV2_0273 PF03746 LamB/YcsF family VV2_0275 PF00563 EAL domain VV2_0275 PF08448 PAS fold VV2_0275 PF00990 Diguanylate cyclase, GGDEF domain VV2_0275 PF05231 MASE1 VV2_0275 PF08447 PAS fold VV2_0275 PF13426 PAS domain VV2_0276 PF07715 TonB-dependent Receptor Plug Domain VV2_0276 PF00593 TonB dependent receptor VV2_0277 PF03466 LysR substrate binding domain VV2_0277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0278 PF00583 Acetyltransferase (GNAT) family VV2_0278 PF13380 CoA binding domain VV2_0278 PF13607 Succinyl-CoA ligase like flavodoxin domain VV2_0279 PF05036 Sporulation related domain VV2_0280 PF01820 D-ala D-ala ligase N-terminus VV2_0280 PF07478 D-ala D-ala ligase C-terminus VV2_0282 PF01253 Translation initiation factor SUI1 VV2_0310 PF03701 Uncharacterised protein family (UPF0181) VV2_0313 PF00486 Transcriptional regulatory protein, C terminal VV2_0313 PF00072 Response regulator receiver domain VV2_0316 PF02233 NAD(P) transhydrogenase beta subunit VV2_0317 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VV2_0317 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VV2_0317 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VV2_0320 PF00990 Diguanylate cyclase, GGDEF domain VV2_0322 PF00072 Response regulator receiver domain VV2_0322 PF00486 Transcriptional regulatory protein, C terminal VV2_0325 PF01047 MarR family VV2_0326 PF00892 EamA-like transporter family VV2_0327 PF00005 ABC transporter VV2_0327 PF03459 TOBE domain VV2_0328 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV2_0330 PF07685 CobB/CobQ-like glutamine amidotransferase domain VV2_0333 PF18030 RimK PreATP-grasp domain VV2_0333 PF08443 RimK-like ATP-grasp domain VV2_0334 PF00155 Aminotransferase class I and II VV2_0335 PF12729 Four helix bundle sensory module for signal transduction VV2_0335 PF00672 HAMP domain VV2_0335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0337 PF03477 ATP cone domain VV2_0337 PF13597 Anaerobic ribonucleoside-triphosphate reductase VV2_0340 PF00873 AcrB/AcrD/AcrF family VV2_0343 PF04143 Sulphur transport VV2_0346 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV2_0346 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV2_0349 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VV2_0349 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VV2_0350 PF00085 Thioredoxin VV2_0351 PF07690 Major Facilitator Superfamily VV2_0352 PF12833 Helix-turn-helix domain VV2_0353 PF01554 MatE VV2_0354 PF11756 Nitrous oxide-stimulated promoter VV2_0356 PF00672 HAMP domain VV2_0356 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0356 PF17200 Single Cache domain 2 VV2_0358 PF03605 Anaerobic c4-dicarboxylate membrane transporter VV2_0361 PF02472 Biopolymer transport protein ExbD/TolR VV2_0362 PF01618 MotA/TolQ/ExbB proton channel family VV2_0363 PF01618 MotA/TolQ/ExbB proton channel family VV2_0367 PF14824 Sirohaem biosynthesis protein central VV2_0367 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV2_0367 PF10414 Sirohaem synthase dimerisation region VV2_0369 PF13806 Rieske-like [2Fe-2S] domain VV2_0370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV2_0370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV2_0370 PF04324 BFD-like [2Fe-2S] binding domain VV2_0370 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV2_0370 PF18267 Rubredoxin NAD+ reductase C-terminal domain VV2_0372 PF00672 HAMP domain VV2_0372 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0372 PF17200 Single Cache domain 2 VV2_0376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0376 PF00512 His Kinase A (phospho-acceptor) domain VV2_0376 PF01627 Hpt domain VV2_0376 PF00072 Response regulator receiver domain VV2_0376 PF00672 HAMP domain VV2_0376 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV2_0377 PF03705 CheR methyltransferase, all-alpha domain VV2_0377 PF01739 CheR methyltransferase, SAM binding domain VV2_0378 PF01339 CheB methylesterase VV2_0379 PF00990 Diguanylate cyclase, GGDEF domain VV2_0379 PF01590 GAF domain VV2_0379 PF00360 Phytochrome region VV2_0379 PF00563 EAL domain VV2_0381 PF00491 Arginase family VV2_0382 PF00271 Helicase conserved C-terminal domain VV2_0382 PF00270 DEAD/DEAH box helicase VV2_0385 PF02492 CobW/HypB/UreG, nucleotide-binding domain VV2_0385 PF07683 Cobalamin synthesis protein cobW C-terminal domain VV2_0387 PF00990 Diguanylate cyclase, GGDEF domain VV2_0390 PF13806 Rieske-like [2Fe-2S] domain VV2_0390 PF18267 Rubredoxin NAD+ reductase C-terminal domain VV2_0390 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV2_0390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV2_0390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV2_0390 PF04324 BFD-like [2Fe-2S] binding domain VV2_0391 PF00005 ABC transporter VV2_0392 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0393 PF00005 ABC transporter VV2_0394 PF08376 Nitrate and nitrite sensing VV2_0394 PF03861 ANTAR domain VV2_0395 PF01738 Dienelactone hydrolase family VV2_0396 PF00591 Glycosyl transferase family, a/b domain VV2_0396 PF02885 Glycosyl transferase family, helical bundle domain VV2_0397 PF14824 Sirohaem biosynthesis protein central VV2_0397 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV2_0397 PF10414 Sirohaem synthase dimerisation region VV2_0398 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV2_0398 PF01568 Molydopterin dinucleotide binding domain VV2_0398 PF00384 Molybdopterin oxidoreductase VV2_0399 PF00583 Acetyltransferase (GNAT) family VV2_0400 PF00128 Alpha amylase, catalytic domain VV2_0401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0401 PF00672 HAMP domain VV2_0402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0402 PF00672 HAMP domain VV2_0404 PF00652 Ricin-type beta-trefoil lectin domain VV2_0404 PF07968 Leukocidin/Hemolysin toxin family VV2_0405 PF07690 Major Facilitator Superfamily VV2_0407 PF03009 Glycerophosphoryl diester phosphodiesterase family VV2_0408 PF01523 Putative modulator of DNA gyrase VV2_0409 PF01523 Putative modulator of DNA gyrase VV2_0410 PF07963 Prokaryotic N-terminal methylation motif VV2_0410 PF08334 Type II secretion system (T2SS), protein G VV2_0411 PF03606 C4-dicarboxylate anaerobic carrier VV2_0412 PF04011 LemA family VV2_0413 PF01435 Peptidase family M48 VV2_0415 PF03527 RHS protein VV2_0416 PF04740 LXG domain of WXG superfamily VV2_0420 PF13737 Transposase DDE domain VV2_0421 PF13737 Transposase DDE domain VV2_0425 PF03527 RHS protein VV2_0428 PF04717 Type VI secretion system, phage-baseplate injector VV2_0430 PF07724 AAA domain (Cdc48 subfamily) VV2_0430 PF00004 ATPase family associated with various cellular activities (AAA) VV2_0430 PF10431 C-terminal, D2-small domain, of ClpB protein VV2_0430 PF17871 AAA lid domain VV2_0442 PF13677 Membrane MotB of proton-channel complex MotA/MotB VV2_0442 PF00691 OmpA family VV2_0446 PF00069 Protein kinase domain VV2_0446 PF03793 PASTA domain VV2_0450 PF12843 Putative quorum-sensing-regulated virulence factor VV2_0453 PF00563 EAL domain VV2_0453 PF03707 Bacterial signalling protein N terminal repeat VV2_0453 PF00990 Diguanylate cyclase, GGDEF domain VV2_0454 PF01329 Pterin 4 alpha carbinolamine dehydratase VV2_0455 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VV2_0456 PF00501 AMP-binding enzyme VV2_0456 PF13193 AMP-binding enzyme C-terminal domain VV2_0458 PF03466 LysR substrate binding domain VV2_0458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0460 PF00892 EamA-like transporter family VV2_0464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0464 PF00512 His Kinase A (phospho-acceptor) domain VV2_0464 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV2_0465 PF11849 Domain of unknown function (DUF3369) VV2_0468 PF00962 Adenosine/AMP deaminase VV2_0469 PF00676 Dehydrogenase E1 component VV2_0470 PF02780 Transketolase, C-terminal domain VV2_0470 PF02779 Transketolase, pyrimidine binding domain VV2_0471 PF02817 e3 binding domain VV2_0471 PF00364 Biotin-requiring enzyme VV2_0471 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV2_0473 PF00766 Electron transfer flavoprotein FAD-binding domain VV2_0473 PF01012 Electron transfer flavoprotein domain VV2_0474 PF01012 Electron transfer flavoprotein domain VV2_0477 PF00672 HAMP domain VV2_0477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0478 PF01168 Alanine racemase, N-terminal domain VV2_0478 PF00842 Alanine racemase, C-terminal domain VV2_0479 PF07634 RtxA repeat VV2_0479 PF11713 Peptidase C80 family VV2_0479 PF12146 Serine aminopeptidase, S33 VV2_0479 PF16671 Actin cross-linking domain VV2_0479 PF11647 Membrane Localization Domain VV2_0480 PF02794 RTX toxin acyltransferase family VV2_0482 PF00664 ABC transporter transmembrane region VV2_0482 PF00005 ABC transporter VV2_0482 PF03412 Peptidase C39 family VV2_0484 PF00664 ABC transporter transmembrane region VV2_0484 PF00005 ABC transporter VV2_0484 PF03412 Peptidase C39 family VV2_0489 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV2_0489 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV2_0490 PF00378 Enoyl-CoA hydratase/isomerase VV2_0491 PF00378 Enoyl-CoA hydratase/isomerase VV2_0492 PF02770 Acyl-CoA dehydrogenase, middle domain VV2_0492 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV2_0492 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV2_0493 PF00171 Aldehyde dehydrogenase family VV2_0494 PF00108 Thiolase, N-terminal domain VV2_0494 PF02803 Thiolase, C-terminal domain VV2_0495 PF00376 MerR family regulatory protein VV2_0495 PF09278 MerR, DNA binding VV2_0496 PF02770 Acyl-CoA dehydrogenase, middle domain VV2_0496 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV2_0496 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV2_0497 PF01039 Carboxyl transferase domain VV2_0498 PF00378 Enoyl-CoA hydratase/isomerase VV2_0499 PF00682 HMGL-like VV2_0501 PF00578 AhpC/TSA family VV2_0501 PF10417 C-terminal domain of 1-Cys peroxiredoxin VV2_0502 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV2_0502 PF13192 Thioredoxin domain VV2_0503 PF00313 'Cold-shock' DNA-binding domain VV2_0505 PF01699 Sodium/calcium exchanger protein VV2_0506 PF00440 Bacterial regulatory proteins, tetR family VV2_0506 PF16925 Tetracyclin repressor-like, C-terminal domain VV2_0507 PF00107 Zinc-binding dehydrogenase VV2_0507 PF16884 N-terminal domain of oxidoreductase VV2_0510 PF07690 Major Facilitator Superfamily VV2_0511 PF00196 Bacterial regulatory proteins, luxR family VV2_0511 PF00072 Response regulator receiver domain VV2_0512 PF05231 MASE1 VV2_0512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0512 PF07730 Histidine kinase VV2_0513 PF07690 Major Facilitator Superfamily VV2_0515 PF01238 Phosphomannose isomerase type I VV2_0516 PF00990 Diguanylate cyclase, GGDEF domain VV2_0518 PF03889 Alternative ribosome-rescue factor A VV2_0519 PF00313 'Cold-shock' DNA-binding domain VV2_0526 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV2_0526 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV2_0527 PF13419 Haloacid dehalogenase-like hydrolase VV2_0528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0528 PF12729 Four helix bundle sensory module for signal transduction VV2_0528 PF00672 HAMP domain VV2_0529 PF00873 AcrB/AcrD/AcrF family VV2_0530 PF13533 Biotin-lipoyl like VV2_0531 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV2_0532 PF01546 Peptidase family M20/M25/M40 VV2_0532 PF07687 Peptidase dimerisation domain VV2_0534 PF00248 Aldo/keto reductase family VV2_0540 PF00654 Voltage gated chloride channel VV2_0542 PF01566 Natural resistance-associated macrophage protein VV2_0543 PF01227 GTP cyclohydrolase I VV2_0544 PF00994 Probable molybdopterin binding domain VV2_0544 PF03453 MoeA N-terminal region (domain I and II) VV2_0544 PF03454 MoeA C-terminal region (domain IV) VV2_0545 PF00899 ThiF family VV2_0547 PF00581 Rhodanese-like domain VV2_0548 PF00563 EAL domain VV2_0548 PF00990 Diguanylate cyclase, GGDEF domain VV2_0548 PF03707 Bacterial signalling protein N terminal repeat VV2_0549 PF00704 Glycosyl hydrolases family 18 VV2_0549 PF08329 Chitinase A, N-terminal domain VV2_0552 PF00923 Transaldolase/Fructose-6-phosphate aldolase VV2_0553 PF02779 Transketolase, pyrimidine binding domain VV2_0553 PF00456 Transketolase, thiamine diphosphate binding domain VV2_0553 PF02780 Transketolase, C-terminal domain VV2_0556 PF00990 Diguanylate cyclase, GGDEF domain VV2_0556 PF00563 EAL domain VV2_0556 PF03707 Bacterial signalling protein N terminal repeat VV2_0557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0557 PF08447 PAS fold VV2_0558 PF00793 DAHP synthetase I family VV2_0559 PF13488 Glycine zipper VV2_0559 PF00691 OmpA family VV2_0560 PF01040 UbiA prenyltransferase family VV2_0561 PF02628 Cytochrome oxidase assembly protein VV2_0565 PF00510 Cytochrome c oxidase subunit III VV2_0566 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VV2_0567 PF00115 Cytochrome C and Quinol oxidase polypeptide I VV2_0568 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VV2_0568 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VV2_0569 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV2_0569 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV2_0569 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV2_0569 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV2_0571 PF01810 LysE type translocator VV2_0575 PF01557 Fumarylacetoacetate (FAA) hydrolase family VV2_0576 PF01047 MarR family VV2_0577 PF02566 OsmC-like protein VV2_0579 PF00578 AhpC/TSA family VV2_0581 PF00563 EAL domain VV2_0581 PF03707 Bacterial signalling protein N terminal repeat VV2_0581 PF00990 Diguanylate cyclase, GGDEF domain VV2_0582 PF00892 EamA-like transporter family VV2_0583 PF00462 Glutaredoxin VV2_0586 PF07690 Major Facilitator Superfamily VV2_0587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0587 PF03466 LysR substrate binding domain VV2_0588 PF00563 EAL domain VV2_0588 PF00360 Phytochrome region VV2_0588 PF00990 Diguanylate cyclase, GGDEF domain VV2_0588 PF01590 GAF domain VV2_0589 PF01042 Endoribonuclease L-PSP VV2_0591 PF00728 Glycosyl hydrolase family 20, catalytic domain VV2_0591 PF02838 Glycosyl hydrolase family 20, domain 2 VV2_0592 PF00474 Sodium:solute symporter family VV2_0594 PF07969 Amidohydrolase family VV2_0596 PF01418 Helix-turn-helix domain, rpiR family VV2_0596 PF01380 SIS domain VV2_0596 PF02685 Glucokinase VV2_0598 PF00005 ABC transporter VV2_0600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VV2_0602 PF12706 Beta-lactamase superfamily domain VV2_0605 PF01047 MarR family VV2_0608 PF00270 DEAD/DEAH box helicase VV2_0608 PF00271 Helicase conserved C-terminal domain VV2_0610 PF00132 Bacterial transferase hexapeptide (six repeats) VV2_0613 PF03372 Endonuclease/Exonuclease/phosphatase family VV2_0615 PF00583 Acetyltransferase (GNAT) family VV2_0616 PF14760 Rnk N-terminus VV2_0616 PF01272 Transcription elongation factor, GreA/GreB, C-term VV2_0618 PF00665 Integrase core domain VV2_0618 PF13276 HTH-like domain VV2_0618 PF13333 Integrase core domain VV2_0629 PF00478 IMP dehydrogenase / GMP reductase domain VV2_0638 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer VV2_0640 PF12477 Sex factor F TraW protein N terminal VV2_0641 PF06834 TraU protein VV2_0645 PF06986 Type-1V conjugative transfer system mating pair stabilisation VV2_0655 PF02899 Phage integrase, N-terminal SAM-like domain VV2_0655 PF00589 Phage integrase family VV2_0658 PF13289 SIR2-like domain VV2_0659 PF10412 Type IV secretion-system coupling protein DNA-binding domain VV2_0659 PF12615 F sex factor protein N terminal VV2_0661 PF04231 Endonuclease I VV2_0663 PF07057 DNA helicase TraI VV2_0663 PF08751 TrwC relaxase VV2_0663 PF18272 single-stranded DNA binding TraI N-terminal subdomain VV2_0663 PF18340 DNA relaxase TraI 2B/2B-like domain VV2_0667 PF02899 Phage integrase, N-terminal SAM-like domain VV2_0667 PF00589 Phage integrase family VV2_0670 PF01145 SPFH domain / Band 7 family VV2_0671 PF01145 SPFH domain / Band 7 family VV2_0672 PF06965 Na+/H+ antiporter 1 VV2_0675 PF01168 Alanine racemase, N-terminal domain VV2_0680 PF07690 Major Facilitator Superfamily VV2_0682 PF13333 Integrase core domain VV2_0682 PF00665 Integrase core domain VV2_0682 PF13276 HTH-like domain VV2_0683 PF01590 GAF domain VV2_0683 PF00158 Sigma-54 interaction domain VV2_0686 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0687 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0688 PF12857 TOBE-like domain VV2_0688 PF00005 ABC transporter VV2_0693 PF01527 Transposase VV2_0694 PF01594 AI-2E family transporter VV2_0695 PF13358 DDE superfamily endonuclease VV2_0695 PF13592 Winged helix-turn helix VV2_0698 PF01979 Amidohydrolase family VV2_0699 PF02492 CobW/HypB/UreG, nucleotide-binding domain VV2_0699 PF07683 Cobalamin synthesis protein cobW C-terminal domain VV2_0701 PF00144 Beta-lactamase VV2_0702 PF13091 PLD-like domain VV2_0704 PF00529 HlyD membrane-fusion protein of T1SS VV2_0704 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV2_0708 PF06892 Phage regulatory protein CII (CP76) VV2_0711 PF00589 Phage integrase family VV2_0712 PF00478 IMP dehydrogenase / GMP reductase domain VV2_0714 PF01256 Carbohydrate kinase VV2_0714 PF03853 YjeF-related protein N-terminus VV2_0716 PF00072 Response regulator receiver domain VV2_0718 PF00072 Response regulator receiver domain VV2_0718 PF00196 Bacterial regulatory proteins, luxR family VV2_0719 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VV2_0719 PF07730 Histidine kinase VV2_0719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0719 PF00672 HAMP domain VV2_0721 PF01568 Molydopterin dinucleotide binding domain VV2_0721 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV2_0721 PF00384 Molybdopterin oxidoreductase VV2_0722 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VV2_0723 PF03264 NapC/NirT cytochrome c family, N-terminal region VV2_0726 PF01344 Kelch motif VV2_0729 PF01380 SIS domain VV2_0729 PF01418 Helix-turn-helix domain, rpiR family VV2_0730 PF00701 Dihydrodipicolinate synthetase family VV2_0731 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV2_0732 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV2_0733 PF03480 Bacterial extracellular solute-binding protein, family 7 VV2_0734 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VV2_0735 PF00480 ROK family VV2_0736 PF01979 Amidohydrolase family VV2_0739 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VV2_0739 PF00561 alpha/beta hydrolase fold VV2_0741 PF02803 Thiolase, C-terminal domain VV2_0741 PF00108 Thiolase, N-terminal domain VV2_0742 PF00106 short chain dehydrogenase VV2_0743 PF07549 SecD/SecF GG Motif VV2_0743 PF02355 Protein export membrane protein VV2_0745 PF02355 Protein export membrane protein VV2_0745 PF13721 SecD export protein N-terminal TM region VV2_0745 PF07549 SecD/SecF GG Motif VV2_0749 PF01037 Lrp/AsnC ligand binding domain VV2_0752 PF00072 Response regulator receiver domain VV2_0752 PF09308 LuxQ, periplasmic VV2_0752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0752 PF00512 His Kinase A (phospho-acceptor) domain VV2_0753 PF13407 Periplasmic binding protein domain VV2_0755 PF01541 GIY-YIG catalytic domain VV2_0756 PF04337 Protein of unknown function, DUF480 VV2_0759 PF04363 Protein of unknown function (DUF496) VV2_0760 PF01554 MatE VV2_0761 PF00512 His Kinase A (phospho-acceptor) domain VV2_0761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0761 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV2_0761 PF00072 Response regulator receiver domain VV2_0761 PF01627 Hpt domain VV2_0761 PF00672 HAMP domain VV2_0764 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV2_0764 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV2_0767 PF03466 LysR substrate binding domain VV2_0767 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0770 PF00462 Glutaredoxin VV2_0770 PF08534 Redoxin VV2_0772 PF03466 LysR substrate binding domain VV2_0772 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0773 PF01037 Lrp/AsnC ligand binding domain VV2_0774 PF13520 Amino acid permease VV2_0775 PF13230 Glutamine amidotransferases class-II VV2_0776 PF00392 Bacterial regulatory proteins, gntR family VV2_0776 PF00155 Aminotransferase class I and II VV2_0778 PF16527 Two-component sensor protein CpxA, periplasmic domain VV2_0778 PF00512 His Kinase A (phospho-acceptor) domain VV2_0778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0778 PF00672 HAMP domain VV2_0779 PF00486 Transcriptional regulatory protein, C terminal VV2_0779 PF00072 Response regulator receiver domain VV2_0785 PF03448 MgtE intracellular N domain VV2_0785 PF01769 Divalent cation transporter VV2_0785 PF00571 CBS domain VV2_0787 PF12833 Helix-turn-helix domain VV2_0788 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VV2_0789 PF07969 Amidohydrolase family VV2_0792 PF13654 AAA domain VV2_0792 PF05362 Lon protease (S16) C-terminal proteolytic domain VV2_0794 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_0794 PF00005 ABC transporter VV2_0795 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VV2_0795 PF00326 Prolyl oligopeptidase family VV2_0796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0796 PF03466 LysR substrate binding domain VV2_0797 PF02652 L-lactate permease VV2_0798 PF02754 Cysteine-rich domain VV2_0799 PF02589 LUD domain VV2_0799 PF13183 4Fe-4S dicluster domain VV2_0799 PF11870 Domain of unknown function (DUF3390) VV2_0800 PF02589 LUD domain VV2_0804 PF07690 Major Facilitator Superfamily VV2_0811 PF08448 PAS fold VV2_0811 PF08447 PAS fold VV2_0811 PF00990 Diguanylate cyclase, GGDEF domain VV2_0811 PF00563 EAL domain VV2_0814 PF04170 NlpE N-terminal domain VV2_0814 PF17185 NlpE C-terminal OB domain VV2_0815 PF00005 ABC transporter VV2_0816 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV2_0817 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0818 PF00528 Binding-protein-dependent transport system inner membrane component VV2_0821 PF08448 PAS fold VV2_0821 PF00990 Diguanylate cyclase, GGDEF domain VV2_0821 PF00563 EAL domain VV2_0822 PF13472 GDSL-like Lipase/Acylhydrolase family VV2_0822 PF17996 Carbohydrate esterase 2 N-terminal VV2_0825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0825 PF12729 Four helix bundle sensory module for signal transduction VV2_0825 PF00672 HAMP domain VV2_0826 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV2_0829 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VV2_0829 PF01648 4'-phosphopantetheinyl transferase superfamily VV2_0830 PF00501 AMP-binding enzyme VV2_0830 PF13193 AMP-binding enzyme C-terminal domain VV2_0830 PF00668 Condensation domain VV2_0830 PF07993 Male sterility protein VV2_0830 PF00550 Phosphopantetheine attachment site VV2_0831 PF00550 Phosphopantetheine attachment site VV2_0831 PF00501 AMP-binding enzyme VV2_0831 PF00975 Thioesterase domain VV2_0831 PF00668 Condensation domain VV2_0831 PF13193 AMP-binding enzyme C-terminal domain VV2_0833 PF00793 DAHP synthetase I family VV2_0835 PF00425 chorismate binding enzyme VV2_0836 PF00501 AMP-binding enzyme VV2_0836 PF13193 AMP-binding enzyme C-terminal domain VV2_0837 PF04954 Siderophore-interacting protein VV2_0837 PF08021 Siderophore-interacting FAD-binding domain VV2_0838 PF00857 Isochorismatase family VV2_0838 PF00550 Phosphopantetheine attachment site VV2_0840 PF13193 AMP-binding enzyme C-terminal domain VV2_0840 PF00501 AMP-binding enzyme VV2_0842 PF01497 Periplasmic binding protein VV2_0843 PF07715 TonB-dependent Receptor Plug Domain VV2_0846 PF18030 RimK PreATP-grasp domain VV2_0846 PF08443 RimK-like ATP-grasp domain VV2_0847 PF08443 RimK-like ATP-grasp domain VV2_0847 PF18030 RimK PreATP-grasp domain VV2_0848 PF00753 Metallo-beta-lactamase superfamily VV2_0851 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV2_0852 PF00873 AcrB/AcrD/AcrF family VV2_0854 PF01212 Beta-eliminating lyase VV2_0855 PF03222 Tryptophan/tyrosine permease family VV2_0856 PF00005 ABC transporter VV2_0856 PF16326 ABC transporter C-terminal domain VV2_0856 PF12848 ABC transporter VV2_0858 PF00175 Oxidoreductase NAD-binding domain VV2_0858 PF00111 2Fe-2S iron-sulfur cluster binding domain VV2_0858 PF00970 Oxidoreductase FAD-binding domain VV2_0859 PF00356 Bacterial regulatory proteins, lacI family VV2_0860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV2_0862 PF03611 PTS system sugar-specific permease component VV2_0863 PF01327 Polypeptide deformylase VV2_0864 PF00041 Fibronectin type III domain VV2_0864 PF12561 ToxR activated gene A lipoprotein domain VV2_0867 PF01595 Cyclin M transmembrane N-terminal domain VV2_0867 PF00571 CBS domain VV2_0867 PF03471 Transporter associated domain VV2_0869 PF00171 Aldehyde dehydrogenase family VV2_0870 PF00158 Sigma-54 interaction domain VV2_0870 PF02954 Bacterial regulatory protein, Fis family VV2_0870 PF01590 GAF domain VV2_0871 PF03707 Bacterial signalling protein N terminal repeat VV2_0871 PF00990 Diguanylate cyclase, GGDEF domain VV2_0871 PF00563 EAL domain VV2_0872 PF13407 Periplasmic binding protein domain VV2_0873 PF02798 Glutathione S-transferase, N-terminal domain VV2_0873 PF14497 Glutathione S-transferase, C-terminal domain VV2_0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0874 PF03466 LysR substrate binding domain VV2_0875 PF02567 Phenazine biosynthesis-like protein VV2_0877 PF00196 Bacterial regulatory proteins, luxR family VV2_0877 PF00072 Response regulator receiver domain VV2_0878 PF00579 tRNA synthetases class I (W and Y) VV2_0878 PF01479 S4 domain VV2_0879 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VV2_0879 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VV2_0881 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV2_0883 PF13533 Biotin-lipoyl like VV2_0885 PF00753 Metallo-beta-lactamase superfamily VV2_0885 PF14864 Alkyl sulfatase C-terminal VV2_0885 PF14863 Alkyl sulfatase dimerisation VV2_0888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0888 PF03466 LysR substrate binding domain VV2_0889 PF00884 Sulfatase VV2_0889 PF08019 Phosphoethanolamine transferase EptA/EptB VV2_0893 PF01758 Sodium Bile acid symporter family VV2_0894 PF01022 Bacterial regulatory protein, arsR family VV2_0898 PF07687 Peptidase dimerisation domain VV2_0898 PF01546 Peptidase family M20/M25/M40 VV2_0899 PF07670 Nucleoside recognition VV2_0900 PF07670 Nucleoside recognition VV2_0903 PF00128 Alpha amylase, catalytic domain VV2_0904 PF01081 KDPG and KHG aldolase VV2_0905 PF00294 pfkB family carbohydrate kinase VV2_0906 PF00892 EamA-like transporter family VV2_0912 PF07883 Cupin domain VV2_0913 PF10688 Bacterial inner membrane protein VV2_0915 PF09339 IclR helix-turn-helix domain VV2_0915 PF01614 Bacterial transcriptional regulator VV2_0920 PF00795 Carbon-nitrogen hydrolase VV2_0920 PF00583 Acetyltransferase (GNAT) family VV2_0925 PF00924 Mechanosensitive ion channel VV2_0928 PF00873 AcrB/AcrD/AcrF family VV2_0929 PF13533 Biotin-lipoyl like VV2_0931 PF00672 HAMP domain VV2_0931 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV2_0931 PF00072 Response regulator receiver domain VV2_0931 PF01627 Hpt domain VV2_0931 PF00512 His Kinase A (phospho-acceptor) domain VV2_0931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0932 PF00293 NUDIX domain VV2_0933 PF01161 Phosphatidylethanolamine-binding protein VV2_0934 PF12833 Helix-turn-helix domain VV2_0935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VV2_0936 PF09278 MerR, DNA binding VV2_0936 PF00376 MerR family regulatory protein VV2_0940 PF00990 Diguanylate cyclase, GGDEF domain VV2_0940 PF17151 Periplasmic sensor domain VV2_0941 PF00583 Acetyltransferase (GNAT) family VV2_0942 PF03144 Elongation factor Tu domain 2 VV2_0942 PF00679 Elongation factor G C-terminus VV2_0942 PF14492 Elongation Factor G, domain II VV2_0942 PF03764 Elongation factor G, domain IV VV2_0942 PF00009 Elongation factor Tu GTP binding domain VV2_0946 PF02001 Protein of unknown function DUF134 VV2_0949 PF00034 Cytochrome c VV2_0949 PF03150 Di-haem cytochrome c peroxidase VV2_0950 PF06942 GlpM protein VV2_0952 PF07519 Tannase and feruloyl esterase VV2_0953 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0953 PF03466 LysR substrate binding domain VV2_0956 PF02311 AraC-like ligand binding domain VV2_0956 PF12833 Helix-turn-helix domain VV2_0957 PF07690 Major Facilitator Superfamily VV2_0960 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV2_0961 PF00892 EamA-like transporter family VV2_0962 PF00175 Oxidoreductase NAD-binding domain VV2_0962 PF00970 Oxidoreductase FAD-binding domain VV2_0964 PF03466 LysR substrate binding domain VV2_0964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0966 PF00881 Nitroreductase family VV2_0967 PF00561 alpha/beta hydrolase fold VV2_0968 PF00270 DEAD/DEAH box helicase VV2_0968 PF00271 Helicase conserved C-terminal domain VV2_0974 PF07504 Fungalysin/Thermolysin Propeptide Motif VV2_0974 PF03413 Peptidase propeptide and YPEB domain VV2_0974 PF02868 Thermolysin metallopeptidase, alpha-helical domain VV2_0974 PF04151 Bacterial pre-peptidase C-terminal domain VV2_0974 PF01447 Thermolysin metallopeptidase, catalytic domain VV2_0975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV2_0975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV2_0977 PF13599 Pentapeptide repeats (9 copies) VV2_0979 PF00672 HAMP domain VV2_0979 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_0980 PF01627 Hpt domain VV2_0980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV2_0980 PF00672 HAMP domain VV2_0980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0980 PF00512 His Kinase A (phospho-acceptor) domain VV2_0980 PF00072 Response regulator receiver domain VV2_0981 PF00072 Response regulator receiver domain VV2_0983 PF01266 FAD dependent oxidoreductase VV2_0986 PF00158 Sigma-54 interaction domain VV2_0986 PF00072 Response regulator receiver domain VV2_0986 PF02954 Bacterial regulatory protein, Fis family VV2_0987 PF02743 Cache domain VV2_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0987 PF00512 His Kinase A (phospho-acceptor) domain VV2_0989 PF14864 Alkyl sulfatase C-terminal VV2_0989 PF00753 Metallo-beta-lactamase superfamily VV2_0989 PF14863 Alkyl sulfatase dimerisation VV2_0991 PF00486 Transcriptional regulatory protein, C terminal VV2_0991 PF00072 Response regulator receiver domain VV2_0992 PF00672 HAMP domain VV2_0992 PF00512 His Kinase A (phospho-acceptor) domain VV2_0992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_0993 PF03466 LysR substrate binding domain VV2_0993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_0994 PF00529 HlyD membrane-fusion protein of T1SS VV2_0994 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV2_0996 PF08267 Cobalamin-independent synthase, N-terminal domain VV2_0996 PF01717 Cobalamin-independent synthase, Catalytic domain VV2_1000 PF17158 Membrane-associated sensor, integral membrane domain VV2_1000 PF00990 Diguanylate cyclase, GGDEF domain VV2_1003 PF11490 DNA polymerase III polC-type N-terminus II VV2_1003 PF00929 Exonuclease VV2_1003 PF02811 PHP domain VV2_1003 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV2_1003 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV2_1003 PF14579 Helix-hairpin-helix motif VV2_1004 PF00005 ABC transporter VV2_1004 PF02687 FtsX-like permease family VV2_1004 PF12704 MacB-like periplasmic core domain VV2_1005 PF00005 ABC transporter VV2_1005 PF02687 FtsX-like permease family VV2_1005 PF12704 MacB-like periplasmic core domain VV2_1006 PF00005 ABC transporter VV2_1006 PF12704 MacB-like periplasmic core domain VV2_1006 PF02687 FtsX-like permease family VV2_1011 PF00005 ABC transporter VV2_1012 PF01497 Periplasmic binding protein VV2_1013 PF01032 FecCD transport family VV2_1016 PF07715 TonB-dependent Receptor Plug Domain VV2_1016 PF00593 TonB dependent receptor VV2_1017 PF01116 Fructose-bisphosphate aldolase class-II VV2_1018 PF01979 Amidohydrolase family VV2_1019 PF03610 PTS system fructose IIA component VV2_1020 PF03613 PTS system mannose/fructose/sorbose family IID component VV2_1021 PF03609 PTS system sorbose-specific iic component VV2_1022 PF03830 PTS system sorbose subfamily IIB component VV2_1023 PF01380 SIS domain VV2_1024 PF08013 Tagatose 6 phosphate kinase VV2_1025 PF08220 DeoR-like helix-turn-helix domain VV2_1025 PF00455 DeoR C terminal sensor domain VV2_1026 PF00455 DeoR C terminal sensor domain VV2_1026 PF08220 DeoR-like helix-turn-helix domain VV2_1027 PF00892 EamA-like transporter family VV2_1028 PF12852 Cupin VV2_1028 PF12833 Helix-turn-helix domain VV2_1030 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VV2_1030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV2_1031 PF03466 LysR substrate binding domain VV2_1031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1032 PF00753 Metallo-beta-lactamase superfamily VV2_1032 PF14863 Alkyl sulfatase dimerisation VV2_1032 PF14864 Alkyl sulfatase C-terminal VV2_1037 PF01641 SelR domain VV2_1038 PF01625 Peptide methionine sulfoxide reductase VV2_1042 PF00672 HAMP domain VV2_1042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1045 PF00462 Glutaredoxin VV2_1046 PF12833 Helix-turn-helix domain VV2_1046 PF12852 Cupin VV2_1047 PF01609 Transposase DDE domain VV2_1047 PF13006 Insertion element 4 transposase N-terminal VV2_1049 PF03466 LysR substrate binding domain VV2_1049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1050 PF02056 Family 4 glycosyl hydrolase VV2_1050 PF11975 Family 4 glycosyl hydrolase C-terminal domain VV2_1051 PF01810 LysE type translocator VV2_1052 PF13404 AsnC-type helix-turn-helix domain VV2_1052 PF01037 Lrp/AsnC ligand binding domain VV2_1055 PF03473 MOSC domain VV2_1055 PF03475 3-alpha domain VV2_1060 PF00356 Bacterial regulatory proteins, lacI family VV2_1061 PF03553 Na+/H+ antiporter family VV2_1062 PF00155 Aminotransferase class I and II VV2_1063 PF00271 Helicase conserved C-terminal domain VV2_1063 PF00270 DEAD/DEAH box helicase VV2_1064 PF03786 D-mannonate dehydratase (UxuA) VV2_1065 PF07729 FCD domain VV2_1065 PF00392 Bacterial regulatory proteins, gntR family VV2_1066 PF03480 Bacterial extracellular solute-binding protein, family 7 VV2_1067 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV2_1068 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV2_1069 PF01232 Mannitol dehydrogenase Rossmann domain VV2_1069 PF08125 Mannitol dehydrogenase C-terminal domain VV2_1070 PF02614 Glucuronate isomerase VV2_1071 PF00294 pfkB family carbohydrate kinase VV2_1072 PF01081 KDPG and KHG aldolase VV2_1073 PF10688 Bacterial inner membrane protein VV2_1074 PF03466 LysR substrate binding domain VV2_1074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1076 PF13417 Glutathione S-transferase, N-terminal domain VV2_1076 PF04399 Glutaredoxin 2, C terminal domain VV2_1077 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VV2_1079 PF08220 DeoR-like helix-turn-helix domain VV2_1079 PF00455 DeoR C terminal sensor domain VV2_1080 PF03611 PTS system sugar-specific permease component VV2_1081 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV2_1082 PF00596 Class II Aldolase and Adducin N-terminal domain VV2_1084 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VV2_1085 PF01261 Xylose isomerase-like TIM barrel VV2_1089 PF00664 ABC transporter transmembrane region VV2_1089 PF00005 ABC transporter VV2_1090 PF02278 Polysaccharide lyase family 8, super-sandwich domain VV2_1090 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VV2_1090 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain VV2_1091 PF17385 Lacto-N-biose phosphorylase central domain VV2_1091 PF17386 Lacto-N-biose phosphorylase C-terminal domain VV2_1091 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain VV2_1092 PF07470 Glycosyl Hydrolase Family 88 VV2_1094 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VV2_1094 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VV2_1095 PF16363 GDP-mannose 4,6 dehydratase VV2_1096 PF00916 Sulfate permease family VV2_1096 PF01740 STAS domain VV2_1099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1099 PF00672 HAMP domain VV2_1100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_1100 PF00005 ABC transporter VV2_1101 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1101 PF12911 N-terminal TM domain of oligopeptide transport permease C VV2_1102 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1104 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV2_1106 PF16347 Domain of unknown function (DUF4976) VV2_1107 PF13186 Iron-sulfur cluster-binding domain VV2_1107 PF04055 Radical SAM superfamily VV2_1108 PF00884 Sulfatase VV2_1109 PF16385 Domain of unknown function VV2_1109 PF00884 Sulfatase VV2_1110 PF02278 Polysaccharide lyase family 8, super-sandwich domain VV2_1110 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VV2_1110 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain VV2_1112 PF01037 Lrp/AsnC ligand binding domain VV2_1116 PF00474 Sodium:solute symporter family VV2_1118 PF01619 Proline dehydrogenase VV2_1118 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VV2_1118 PF00171 Aldehyde dehydrogenase family VV2_1118 PF14850 DNA-binding domain of Proline dehydrogenase VV2_1119 PF12833 Helix-turn-helix domain VV2_1122 PF01243 Pyridoxamine 5'-phosphate oxidase VV2_1122 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VV2_1123 PF00512 His Kinase A (phospho-acceptor) domain VV2_1123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1123 PF02743 Cache domain VV2_1124 PF02954 Bacterial regulatory protein, Fis family VV2_1124 PF00072 Response regulator receiver domain VV2_1124 PF00158 Sigma-54 interaction domain VV2_1125 PF00529 HlyD membrane-fusion protein of T1SS VV2_1128 PF00664 ABC transporter transmembrane region VV2_1128 PF03412 Peptidase C39 family VV2_1128 PF00005 ABC transporter VV2_1130 PF03606 C4-dicarboxylate anaerobic carrier VV2_1131 PF01979 Amidohydrolase family VV2_1134 PF00118 TCP-1/cpn60 chaperonin family VV2_1135 PF00166 Chaperonin 10 Kd subunit VV2_1136 PF14602 Hexapeptide repeat of succinyl-transferase VV2_1136 PF12464 Maltose acetyltransferase VV2_1139 PF01189 16S rRNA methyltransferase RsmB/F VV2_1139 PF01029 NusB family VV2_1140 PF01418 Helix-turn-helix domain, rpiR family VV2_1140 PF01380 SIS domain VV2_1141 PF13580 SIS domain VV2_1142 PF02378 Phosphotransferase system, EIIC VV2_1142 PF00367 phosphotransferase system, EIIB VV2_1144 PF00563 EAL domain VV2_1144 PF01590 GAF domain VV2_1144 PF00990 Diguanylate cyclase, GGDEF domain VV2_1144 PF00989 PAS fold VV2_1145 PF00300 Histidine phosphatase superfamily (branch 1) VV2_1146 PF08453 Peptidase family M9 N-terminal VV2_1146 PF01752 Collagenase VV2_1146 PF04151 Bacterial pre-peptidase C-terminal domain VV2_1148 PF01039 Carboxyl transferase domain VV2_1148 PF17848 Acetyl-coA carboxylase zinc finger domain VV2_1154 PF03793 PASTA domain VV2_1154 PF00069 Protein kinase domain VV2_1158 PF00072 Response regulator receiver domain VV2_1158 PF00990 Diguanylate cyclase, GGDEF domain VV2_1160 PF00672 HAMP domain VV2_1160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1160 PF02203 Tar ligand binding domain homologue VV2_1161 PF01339 CheB methylesterase VV2_1161 PF00072 Response regulator receiver domain VV2_1162 PF03975 CheD chemotactic sensory transduction VV2_1163 PF01739 CheR methyltransferase, SAM binding domain VV2_1163 PF03705 CheR methyltransferase, all-alpha domain VV2_1165 PF00672 HAMP domain VV2_1165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1165 PF02203 Tar ligand binding domain homologue VV2_1166 PF01584 CheW-like domain VV2_1167 PF01584 CheW-like domain VV2_1168 PF01584 CheW-like domain VV2_1168 PF01627 Hpt domain VV2_1168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1168 PF02895 Signal transducing histidine kinase, homodimeric domain VV2_1168 PF09078 CheY binding VV2_1169 PF00072 Response regulator receiver domain VV2_1171 PF13718 GNAT acetyltransferase 2 VV2_1171 PF05127 Helicase VV2_1172 PF02195 ParB-like nuclease domain VV2_1172 PF08775 ParB family VV2_1173 PF18607 ParA helix turn helix domain VV2_1173 PF13614 AAA domain VV2_1177 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_1177 PF00005 ABC transporter VV2_1178 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_1178 PF00005 ABC transporter VV2_1180 PF00925 GTP cyclohydrolase II VV2_1180 PF08719 Domain of unknown function (DUF1768) VV2_1182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1182 PF00072 Response regulator receiver domain VV2_1182 PF01627 Hpt domain VV2_1182 PF00512 His Kinase A (phospho-acceptor) domain VV2_1182 PF00672 HAMP domain VV2_1182 PF17149 Periplasmic sensor domain found in signal transduction proteins VV2_1184 PF01709 Transcriptional regulator VV2_1186 PF03466 LysR substrate binding domain VV2_1186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1188 PF00005 ABC transporter VV2_1189 PF02687 FtsX-like permease family VV2_1189 PF12704 MacB-like periplasmic core domain VV2_1192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1192 PF07694 5TMR of 5TMR-LYT VV2_1192 PF06580 Histidine kinase VV2_1193 PF04397 LytTr DNA-binding domain VV2_1193 PF00072 Response regulator receiver domain VV2_1195 PF17200 Single Cache domain 2 VV2_1195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1195 PF00672 HAMP domain VV2_1197 PF03616 Sodium/glutamate symporter VV2_1198 PF03616 Sodium/glutamate symporter VV2_1200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VV2_1204 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VV2_1204 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VV2_1206 PF03466 LysR substrate binding domain VV2_1206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1208 PF06029 AlkA N-terminal domain VV2_1208 PF00730 HhH-GPD superfamily base excision DNA repair protein VV2_1209 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VV2_1209 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VV2_1211 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VV2_1213 PF03600 Citrate transporter VV2_1215 PF00440 Bacterial regulatory proteins, tetR family VV2_1215 PF08361 MAATS-type transcriptional repressor, C-terminal region VV2_1217 PF08329 Chitinase A, N-terminal domain VV2_1217 PF00704 Glycosyl hydrolases family 18 VV2_1219 PF06865 Pyrimidine/purine nucleoside phosphorylase VV2_1220 PF05726 Pirin C-terminal cupin domain VV2_1220 PF02678 Pirin VV2_1222 PF00563 EAL domain VV2_1222 PF00990 Diguanylate cyclase, GGDEF domain VV2_1225 PF00990 Diguanylate cyclase, GGDEF domain VV2_1225 PF17158 Membrane-associated sensor, integral membrane domain VV2_1226 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV2_1226 PF00128 Alpha amylase, catalytic domain VV2_1227 PF02264 LamB porin VV2_1228 PF07148 Maltose operon periplasmic protein precursor (MalM) VV2_1230 PF01547 Bacterial extracellular solute-binding protein VV2_1231 PF00128 Alpha amylase, catalytic domain VV2_1231 PF16657 Maltogenic Amylase, C-terminal domain VV2_1231 PF02903 Alpha amylase, N-terminal ig-like domain VV2_1233 PF18494 Pullulanase Ins domain VV2_1233 PF17967 Pullulanase N2 domain VV2_1233 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV2_1233 PF03714 Bacterial pullanase-associated domain VV2_1233 PF11852 Domain of unknown function (DUF3372) VV2_1235 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VV2_1235 PF01276 Orn/Lys/Arg decarboxylase, major domain VV2_1235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VV2_1236 PF13520 Amino acid permease VV2_1237 PF08543 Phosphomethylpyrimidine kinase VV2_1238 PF00375 Sodium:dicarboxylate symporter family VV2_1239 PF03193 RsgA GTPase VV2_1240 PF04314 Copper chaperone PCu(A)C VV2_1241 PF02630 SCO1/SenC VV2_1247 PF17874 MalT-like TPR region VV2_1247 PF00196 Bacterial regulatory proteins, luxR family VV2_1250 PF00343 Carbohydrate phosphorylase VV2_1251 PF02446 4-alpha-glucanotransferase VV2_1252 PF02806 Alpha amylase, C-terminal all-beta domain VV2_1252 PF00128 Alpha amylase, catalytic domain VV2_1252 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VV2_1253 PF00672 HAMP domain VV2_1253 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1254 PF00919 Uncharacterized protein family UPF0004 VV2_1254 PF18693 TRAM domain VV2_1254 PF04055 Radical SAM superfamily VV2_1255 PF01810 LysE type translocator VV2_1256 PF01037 Lrp/AsnC ligand binding domain VV2_1257 PF01470 Pyroglutamyl peptidase VV2_1262 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1262 PF02743 Cache domain VV2_1262 PF00672 HAMP domain VV2_1266 PF00171 Aldehyde dehydrogenase family VV2_1267 PF02798 Glutathione S-transferase, N-terminal domain VV2_1268 PF01966 HD domain VV2_1269 PF02690 Na+/Pi-cotransporter VV2_1270 PF05193 Peptidase M16 inactive domain VV2_1270 PF00675 Insulinase (Peptidase family M16) VV2_1272 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1272 PF03466 LysR substrate binding domain VV2_1273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1273 PF03466 LysR substrate binding domain VV2_1274 PF01699 Sodium/calcium exchanger protein VV2_1275 PF09335 SNARE associated Golgi protein VV2_1277 PF00512 His Kinase A (phospho-acceptor) domain VV2_1277 PF08521 Two-component sensor kinase N-terminal VV2_1277 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1278 PF00072 Response regulator receiver domain VV2_1278 PF00486 Transcriptional regulatory protein, C terminal VV2_1279 PF00990 Diguanylate cyclase, GGDEF domain VV2_1281 PF02264 LamB porin VV2_1282 PF00356 Bacterial regulatory proteins, lacI family VV2_1284 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1286 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1287 PF00232 Glycosyl hydrolase family 1 VV2_1289 PF00356 Bacterial regulatory proteins, lacI family VV2_1291 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV2_1292 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1293 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1294 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_1294 PF00005 ABC transporter VV2_1295 PF00005 ABC transporter VV2_1295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV2_1297 PF00356 Bacterial regulatory proteins, lacI family VV2_1300 PF00722 Glycosyl hydrolases family 16 VV2_1301 PF02264 LamB porin VV2_1302 PF12833 Helix-turn-helix domain VV2_1304 PF00933 Glycosyl hydrolase family 3 N terminal domain VV2_1304 PF14310 Fibronectin type III-like domain VV2_1304 PF01915 Glycosyl hydrolase family 3 C-terminal domain VV2_1306 PF01554 MatE VV2_1308 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV2_1308 PF00529 HlyD membrane-fusion protein of T1SS VV2_1318 PF00849 RNA pseudouridylate synthase VV2_1319 PF00563 EAL domain VV2_1319 PF03707 Bacterial signalling protein N terminal repeat VV2_1319 PF00990 Diguanylate cyclase, GGDEF domain VV2_1320 PF00873 AcrB/AcrD/AcrF family VV2_1323 PF00356 Bacterial regulatory proteins, lacI family VV2_1324 PF02653 Branched-chain amino acid transport system / permease component VV2_1325 PF00005 ABC transporter VV2_1326 PF13407 Periplasmic binding protein domain VV2_1327 PF02837 Glycosyl hydrolases family 2, sugar binding domain VV2_1327 PF16353 Domain of unknown function(DUF4981) VV2_1327 PF00703 Glycosyl hydrolases family 2 VV2_1327 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VV2_1327 PF02929 Beta galactosidase small chain VV2_1329 PF02264 LamB porin VV2_1330 PF16874 Glycosyl hydrolase family 36 C-terminal domain VV2_1330 PF16875 Glycosyl hydrolase family 36 N-terminal domain VV2_1334 PF08032 RNA 2'-O ribose methyltransferase substrate binding VV2_1334 PF00588 SpoU rRNA Methylase family VV2_1335 PF00037 4Fe-4S binding domain VV2_1335 PF11953 Domain of unknown function (DUF3470) VV2_1337 PF00593 TonB dependent receptor VV2_1337 PF07715 TonB-dependent Receptor Plug Domain VV2_1338 PF12833 Helix-turn-helix domain VV2_1342 PF00158 Sigma-54 interaction domain VV2_1342 PF01590 GAF domain VV2_1343 PF00753 Metallo-beta-lactamase superfamily VV2_1343 PF00301 Rubredoxin VV2_1343 PF00258 Flavodoxin VV2_1344 PF18113 Rubredoxin binding C-terminal domain VV2_1344 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV2_1348 PF01238 Phosphomannose isomerase type I VV2_1349 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV2_1349 PF02378 Phosphotransferase system, EIIC VV2_1349 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV2_1350 PF12833 Helix-turn-helix domain VV2_1352 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV2_1354 PF00392 Bacterial regulatory proteins, gntR family VV2_1354 PF00155 Aminotransferase class I and II VV2_1360 PF01568 Molydopterin dinucleotide binding domain VV2_1360 PF00384 Molybdopterin oxidoreductase VV2_1360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV2_1360 PF12838 4Fe-4S dicluster domain VV2_1360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VV2_1363 PF03466 LysR substrate binding domain VV2_1363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1364 PF01048 Phosphorylase superfamily VV2_1365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1365 PF03466 LysR substrate binding domain VV2_1367 PF08453 Peptidase family M9 N-terminal VV2_1367 PF01752 Collagenase VV2_1367 PF04151 Bacterial pre-peptidase C-terminal domain VV2_1370 PF00905 Penicillin binding protein transpeptidase domain VV2_1370 PF03717 Penicillin-binding Protein dimerisation domain VV2_1372 PF04973 Nicotinamide mononucleotide transporter VV2_1373 PF01048 Phosphorylase superfamily VV2_1377 PF03466 LysR substrate binding domain VV2_1377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1381 PF00764 Arginosuccinate synthase VV2_1382 PF03466 LysR substrate binding domain VV2_1382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1383 PF00375 Sodium:dicarboxylate symporter family VV2_1391 PF03466 LysR substrate binding domain VV2_1391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1393 PF00881 Nitroreductase family VV2_1394 PF05958 tRNA (Uracil-5-)-methyltransferase VV2_1395 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VV2_1401 PF00392 Bacterial regulatory proteins, gntR family VV2_1401 PF00155 Aminotransferase class I and II VV2_1403 PF08448 PAS fold VV2_1403 PF00990 Diguanylate cyclase, GGDEF domain VV2_1406 PF04231 Endonuclease I VV2_1408 PF02903 Alpha amylase, N-terminal ig-like domain VV2_1408 PF16657 Maltogenic Amylase, C-terminal domain VV2_1408 PF00128 Alpha amylase, catalytic domain VV2_1410 PF00884 Sulfatase VV2_1411 PF08019 Phosphoethanolamine transferase EptA/EptB VV2_1411 PF00884 Sulfatase VV2_1412 PF01219 Prokaryotic diacylglycerol kinase VV2_1413 PF00672 HAMP domain VV2_1413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1413 PF00512 His Kinase A (phospho-acceptor) domain VV2_1414 PF00486 Transcriptional regulatory protein, C terminal VV2_1414 PF00072 Response regulator receiver domain VV2_1417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1417 PF03466 LysR substrate binding domain VV2_1418 PF00106 short chain dehydrogenase VV2_1419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1419 PF03466 LysR substrate binding domain VV2_1424 PF01323 DSBA-like thioredoxin domain VV2_1425 PF00282 Pyridoxal-dependent decarboxylase conserved domain VV2_1426 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VV2_1432 PF01569 PAP2 superfamily VV2_1433 PF08543 Phosphomethylpyrimidine kinase VV2_1434 PF04013 Putative SAM-dependent RNA methyltransferase VV2_1451 PF10928 Protein of unknown function (DUF2810) VV2_1453 PF07690 Major Facilitator Superfamily VV2_1458 PF13416 Bacterial extracellular solute-binding protein VV2_1460 PF00593 TonB dependent receptor VV2_1460 PF07715 TonB-dependent Receptor Plug Domain VV2_1462 PF00563 EAL domain VV2_1462 PF03707 Bacterial signalling protein N terminal repeat VV2_1462 PF00990 Diguanylate cyclase, GGDEF domain VV2_1464 PF01906 Putative heavy-metal-binding VV2_1465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1465 PF03466 LysR substrate binding domain VV2_1467 PF01966 HD domain VV2_1471 PF00080 Copper/zinc superoxide dismutase (SODC) VV2_1473 PF06628 Catalase-related immune-responsive VV2_1473 PF00199 Catalase VV2_1477 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV2_1478 PF03466 LysR substrate binding domain VV2_1478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1479 PF07690 Major Facilitator Superfamily VV2_1480 PF13006 Insertion element 4 transposase N-terminal VV2_1480 PF01609 Transposase DDE domain VV2_1483 PF00657 GDSL-like Lipase/Acylhydrolase VV2_1484 PF00155 Aminotransferase class I and II VV2_1485 PF00107 Zinc-binding dehydrogenase VV2_1485 PF08240 Alcohol dehydrogenase GroES-like domain VV2_1500 PF08212 Lipocalin-like domain VV2_1503 PF03466 LysR substrate binding domain VV2_1503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1505 PF01593 Flavin containing amine oxidoreductase VV2_1508 PF00072 Response regulator receiver domain VV2_1508 PF00196 Bacterial regulatory proteins, luxR family VV2_1509 PF00990 Diguanylate cyclase, GGDEF domain VV2_1509 PF03707 Bacterial signalling protein N terminal repeat VV2_1509 PF00563 EAL domain VV2_1510 PF00196 Bacterial regulatory proteins, luxR family VV2_1510 PF00072 Response regulator receiver domain VV2_1511 PF00990 Diguanylate cyclase, GGDEF domain VV2_1511 PF00563 EAL domain VV2_1511 PF03707 Bacterial signalling protein N terminal repeat VV2_1512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV2_1512 PF00072 Response regulator receiver domain VV2_1512 PF00512 His Kinase A (phospho-acceptor) domain VV2_1512 PF09456 RcsC Alpha-Beta-Loop (ABL) VV2_1513 PF04076 Bacterial OB fold (BOF) protein VV2_1515 PF03412 Peptidase C39 family VV2_1515 PF00664 ABC transporter transmembrane region VV2_1515 PF00005 ABC transporter VV2_1516 PF00529 HlyD membrane-fusion protein of T1SS VV2_1517 PF02321 Outer membrane efflux protein VV2_1519 PF12849 PBP superfamily domain VV2_1520 PF00194 Eukaryotic-type carbonic anhydrase VV2_1521 PF00924 Mechanosensitive ion channel VV2_1523 PF00672 HAMP domain VV2_1523 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1525 PF12945 Flagellar protein YcgR VV2_1525 PF07238 PilZ domain VV2_1528 PF13302 Acetyltransferase (GNAT) domain VV2_1529 PF14684 Tricorn protease C1 domain VV2_1529 PF03572 Peptidase family S41 VV2_1529 PF14685 Tricorn protease PDZ domain VV2_1529 PF07676 WD40-like Beta Propeller Repeat VV2_1533 PF12558 ATP-binding cassette cobalt transporter VV2_1533 PF00005 ABC transporter VV2_1534 PF07155 ECF-type riboflavin transporter, S component VV2_1535 PF00529 HlyD membrane-fusion protein of T1SS VV2_1535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV2_1536 PF11742 Protein of unknown function (DUF3302) VV2_1537 PF00990 Diguanylate cyclase, GGDEF domain VV2_1540 PF01048 Phosphorylase superfamily VV2_1541 PF08349 Protein of unknown function (DUF1722) VV2_1542 PF13411 MerR HTH family regulatory protein VV2_1543 PF03441 FAD binding domain of DNA photolyase VV2_1543 PF00875 DNA photolyase VV2_1544 PF17969 L,D-transpeptidase C-terminal domain VV2_1544 PF01476 LysM domain VV2_1544 PF03734 L,D-transpeptidase catalytic domain VV2_1546 PF00270 DEAD/DEAH box helicase VV2_1546 PF00271 Helicase conserved C-terminal domain VV2_1548 PF00326 Prolyl oligopeptidase family VV2_1548 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VV2_1549 PF00593 TonB dependent receptor VV2_1549 PF07715 TonB-dependent Receptor Plug Domain VV2_1553 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1553 PF00672 HAMP domain VV2_1553 PF02743 Cache domain VV2_1555 PF00672 HAMP domain VV2_1555 PF12729 Four helix bundle sensory module for signal transduction VV2_1555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1556 PF12849 PBP superfamily domain VV2_1557 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1558 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1559 PF00005 ABC transporter VV2_1560 PF00360 Phytochrome region VV2_1560 PF01590 GAF domain VV2_1560 PF00563 EAL domain VV2_1560 PF00990 Diguanylate cyclase, GGDEF domain VV2_1562 PF00092 von Willebrand factor type A domain VV2_1562 PF07584 Aerotolerance regulator N-terminal VV2_1565 PF01882 Protein of unknown function DUF58 VV2_1566 PF17863 AAA lid domain VV2_1566 PF07726 ATPase family associated with various cellular activities (AAA) VV2_1567 PF02743 Cache domain VV2_1567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1567 PF00672 HAMP domain VV2_1569 PF00196 Bacterial regulatory proteins, luxR family VV2_1570 PF00196 Bacterial regulatory proteins, luxR family VV2_1572 PF00005 ABC transporter VV2_1572 PF00664 ABC transporter transmembrane region VV2_1573 PF00529 HlyD membrane-fusion protein of T1SS VV2_1576 PF00534 Glycosyl transferases group 1 VV2_1576 PF13439 Glycosyltransferase Family 4 VV2_1578 PF00534 Glycosyl transferases group 1 VV2_1578 PF13439 Glycosyltransferase Family 4 VV2_1579 PF13614 AAA domain VV2_1579 PF13807 G-rich domain on putative tyrosine kinase VV2_1579 PF02706 Chain length determinant protein VV2_1580 PF10531 SLBB domain VV2_1580 PF02563 Polysaccharide biosynthesis/export protein VV2_1582 PF02397 Bacterial sugar transferase VV2_1584 PF08402 TOBE domain VV2_1584 PF00005 ABC transporter VV2_1585 PF01547 Bacterial extracellular solute-binding protein VV2_1586 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1586 PF14785 Maltose transport system permease protein MalF P2 domain VV2_1587 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1594 PF05661 Protein of unknown function (DUF808) VV2_1595 PF17151 Periplasmic sensor domain VV2_1595 PF00990 Diguanylate cyclase, GGDEF domain VV2_1596 PF01979 Amidohydrolase family VV2_1598 PF03473 MOSC domain VV2_1598 PF03476 MOSC N-terminal beta barrel domain VV2_1598 PF00111 2Fe-2S iron-sulfur cluster binding domain VV2_1598 PF00111 2Fe-2S iron-sulfur cluster binding domain VV2_1598 PF03476 MOSC N-terminal beta barrel domain VV2_1598 PF03473 MOSC domain VV2_1599 PF02540 NAD synthase VV2_1609 PF00005 ABC transporter VV2_1610 PF01032 FecCD transport family VV2_1612 PF02472 Biopolymer transport protein ExbD/TolR VV2_1613 PF01618 MotA/TolQ/ExbB proton channel family VV2_1614 PF03544 Gram-negative bacterial TonB protein C-terminal VV2_1615 PF04055 Radical SAM superfamily VV2_1616 PF06228 Haem utilisation ChuX/HutX VV2_1617 PF01243 Pyridoxamine 5'-phosphate oxidase VV2_1619 PF01584 CheW-like domain VV2_1619 PF00072 Response regulator receiver domain VV2_1621 PF00582 Universal stress protein family VV2_1622 PF00128 Alpha amylase, catalytic domain VV2_1623 PF02743 Cache domain VV2_1623 PF00672 HAMP domain VV2_1623 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1624 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1624 PF02743 Cache domain VV2_1624 PF00672 HAMP domain VV2_1633 PF01476 LysM domain VV2_1633 PF01551 Peptidase family M23 VV2_1633 PF08525 Opacity-associated protein A N-terminal motif VV2_1634 PF13419 Haloacid dehalogenase-like hydrolase VV2_1637 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV2_1637 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV2_1641 PF01773 Na+ dependent nucleoside transporter N-terminus VV2_1641 PF07662 Na+ dependent nucleoside transporter C-terminus VV2_1641 PF07670 Nucleoside recognition VV2_1644 PF00990 Diguanylate cyclase, GGDEF domain VV2_1644 PF00563 EAL domain VV2_1644 PF03707 Bacterial signalling protein N terminal repeat VV2_1645 PF12729 Four helix bundle sensory module for signal transduction VV2_1645 PF00672 HAMP domain VV2_1645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1648 PF00990 Diguanylate cyclase, GGDEF domain VV2_1649 PF01625 Peptide methionine sulfoxide reductase VV2_1649 PF01641 SelR domain VV2_1650 PF02566 OsmC-like protein VV2_1651 PF14602 Hexapeptide repeat of succinyl-transferase VV2_1651 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VV2_1651 PF00132 Bacterial transferase hexapeptide (six repeats) VV2_1654 PF03466 LysR substrate binding domain VV2_1654 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1655 PF13419 Haloacid dehalogenase-like hydrolase VV2_1658 PF00672 HAMP domain VV2_1658 PF16591 Helical bimodular sensor domain VV2_1658 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV2_1660 PF00155 Aminotransferase class I and II VV2_1661 PF01497 Periplasmic binding protein VV2_1661 PF12833 Helix-turn-helix domain VV2_1662 PF13419 Haloacid dehalogenase-like hydrolase VV2_1664 PF00266 Aminotransferase class-V VV2_1669 PF00005 ABC transporter VV2_1670 PF00528 Binding-protein-dependent transport system inner membrane component VV2_1671 PF07702 UTRA domain VV2_1671 PF00392 Bacterial regulatory proteins, gntR family VV2_1673 PF01266 FAD dependent oxidoreductase VV2_1674 PF03466 LysR substrate binding domain VV2_1674 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV2_1676 PF00854 POT family VV2_1677 PF03313 Serine dehydratase alpha chain VV2_1677 PF03315 Serine dehydratase beta chain VV2_1681 PF00768 D-alanyl-D-alanine carboxypeptidase VV2_1681 PF07943 Penicillin-binding protein 5, C-terminal domain VV2_1686 PF13977 BetI-type transcriptional repressor, C-terminal VV2_1686 PF00440 Bacterial regulatory proteins, tetR family VV2_1687 PF00171 Aldehyde dehydrogenase family VV2_1688 PF00732 GMC oxidoreductase VV2_1688 PF05199 GMC oxidoreductase VV2_1689 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VV2_1693 PF12838 4Fe-4S dicluster domain VV2_1693 PF13187 4Fe-4S dicluster domain