VV1_0002 SM00833 Cobalamin synthesis protein cobW C-terminal domain VV1_0010 SM00382 ATPases associated with a variety of cellular activities VV1_0014 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_0015 SM01144 VV1_0015 VV1_0019 SM00411 bacterial (prokaryotic) histone like domain VV1_0021 SM00382 ATPases associated with a variety of cellular activities VV1_0021 SM00464 Found in ATP-dependent protease La (LON) VV1_0022 SM00382 ATPases associated with a variety of cellular activities VV1_0022 SM00994 ClpX C4-type zinc finger VV1_0022 SM01086 C-terminal, D2-small domain, of ClpB protein VV1_0025 SM00387 Histidine kinase-like ATPases VV1_0025 SM00388 His Kinase A (phosphoacceptor) domain VV1_0026 SM00382 ATPases associated with a variety of cellular activities VV1_0026 SM00448 cheY-homologous receiver domain VV1_0032 SM00382 ATPases associated with a variety of cellular activities VV1_0036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0036 SM00387 Histidine kinase-like ATPases VV1_0037 SM00448 cheY-homologous receiver domain VV1_0037 SM00862 Transcriptional regulatory protein, C terminal VV1_0040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_0040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0046 SM00563 Phosphate acyltransferases VV1_0058 SM00825 Beta-ketoacyl synthase VV1_0061 SM00825 Beta-ketoacyl synthase VV1_0070 SM01022 VV1_0070 VV1_0083 SM00530 Helix-turn-helix XRE-family like proteins VV1_0120 SM00883 Chaperonin 10 Kd subunit VV1_0125 SM00388 His Kinase A (phosphoacceptor) domain VV1_0126 SM00448 cheY-homologous receiver domain VV1_0126 SM00862 Transcriptional regulatory protein, C terminal VV1_0135 SM00474 3'-5' exonuclease VV1_0141 SM00487 DEAD-like helicases superfamily VV1_0141 SM00491 VV1_0141 VV1_0145 SM00836 DALR anticodon binding domain VV1_0145 SM01016 Arginyl tRNA synthetase N terminal dom VV1_0149 SM00899 VV1_0149 VV1_0150 SM00342 helix_turn_helix, arabinose operon control protein VV1_0152 SM00382 ATPases associated with a variety of cellular activities VV1_0154 SM00881 CoA binding domain VV1_0157 SM00861 Transketolase, pyrimidine binding domain VV1_0184 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VV1_0186 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_0186 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0186 SM01358 VV1_0186 VV1_0189 SM00387 Histidine kinase-like ATPases VV1_0190 SM00862 Transcriptional regulatory protein, C terminal VV1_0195 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0196 SM00938 Nitrogen regulatory protein P-II VV1_0202 SM00244 prohibitin homologues VV1_0206 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VV1_0206 SM00292 breast cancer carboxy-terminal domain VV1_0206 SM00532 Ligase N family VV1_0207 SM00771 ZipA, C-terminal domain (FtsZ-binding) VV1_0218 SM00047 Lysozyme subfamily 2 VV1_0227 SM00138 Methyltransferase, chemotaxis proteins VV1_0228 SM00260 Two component signalling adaptor domain VV1_0228 SM00448 cheY-homologous receiver domain VV1_0229 SM00858 VV1_0229 VV1_0241 SM01081 Putative carbohydrate binding domain VV1_0245 SM00463 Small MutS-related domain VV1_0246 SM00363 S4 RNA-binding domain VV1_0253 SM00937 VV1_0253 VV1_0257 SM01400 VV1_0257 VV1_0266 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_0269 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0269 SM01091 Transporter associated domain VV1_0281 SM00936 Penicillin-binding protein 5, C-terminal domain VV1_0284 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_0288 SM00642 Alpha-amylase domain VV1_0290 SM00354 helix_turn _helix lactose operon repressor VV1_0292 SM00382 ATPases associated with a variety of cellular activities VV1_0292 SM00930 VV1_0292 VV1_0298 SM00028 Tetratricopeptide repeats VV1_0299 SM00267 diguanylate cyclase VV1_0301 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VV1_0301 SM00475 5'-3' exonuclease VV1_0302 SM00477 DNA/RNA non-specific endonuclease VV1_0302 SM00892 DNA/RNA non-specific endonuclease VV1_0310 SM00981 VV1_0310 VV1_0315 SM00861 Transketolase, pyrimidine binding domain VV1_0340 SM01211 VV1_0340 VV1_0341 SM00062 Bacterial periplasmic substrate-binding proteins VV1_0344 SM00829 Enoylreductase VV1_0354 SM00271 DnaJ molecular chaperone homology domain VV1_0378 SM00530 Helix-turn-helix XRE-family like proteins VV1_0402 SM00530 Helix-turn-helix XRE-family like proteins VV1_0403 SM00563 Phosphate acyltransferases VV1_0417 SM00495 Chitin-binding domain type 3 VV1_0419 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0419 SM01240 VV1_0419 VV1_0421 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV1_0421 SM00267 diguanylate cyclase VV1_0423 SM00173 Ras subfamily of RAS small GTPases VV1_0423 SM00382 ATPases associated with a variety of cellular activities VV1_0424 SM00564 beta-propeller repeat VV1_0430 SM00562 VV1_0430 VV1_0435 SM00271 DnaJ molecular chaperone homology domain VV1_0444 SM01323 VV1_0444 VV1_0447 SM00020 Trypsin-like serine protease VV1_0448 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0461 SM00382 ATPases associated with a variety of cellular activities VV1_0467 SM00091 PAS domain VV1_0467 SM00387 Histidine kinase-like ATPases VV1_0467 SM00388 His Kinase A (phosphoacceptor) domain VV1_0468 SM00448 cheY-homologous receiver domain VV1_0468 SM00862 Transcriptional regulatory protein, C terminal VV1_0482 SM00382 ATPases associated with a variety of cellular activities VV1_0482 SM01086 C-terminal, D2-small domain, of ClpB protein VV1_0484 SM00363 S4 RNA-binding domain VV1_0487 SM00830 Chorismate mutase type II VV1_0491 SM00382 ATPases associated with a variety of cellular activities VV1_0494 SM00830 Chorismate mutase type II VV1_0503 SM00448 cheY-homologous receiver domain VV1_0503 SM00850 LytTr DNA-binding domain VV1_0508 SM00904 Riboflavin kinase VV1_0512 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VV1_0515 SM01154 VV1_0515 VV1_0519 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV1_0521 SM00927 DNA mismatch repair enzyme MutH VV1_0525 SM00382 ATPases associated with a variety of cellular activities VV1_0527 SM00937 VV1_0527 VV1_0534 SM00487 DEAD-like helicases superfamily VV1_0534 SM00490 helicase superfamily c-terminal domain VV1_0540 SM00986 Uracil DNA glycosylase superfamily VV1_0540 SM00987 UreE urease accessory protein, C-terminal domain VV1_0541 SM00518 AP endonuclease family 2 VV1_0548 SM00448 cheY-homologous receiver domain VV1_0548 SM00862 Transcriptional regulatory protein, C terminal VV1_0550 SM00073 Histidine Phosphotransfer domain VV1_0550 SM00091 PAS domain VV1_0550 SM00387 Histidine kinase-like ATPases VV1_0550 SM00388 His Kinase A (phosphoacceptor) domain VV1_0550 SM00448 cheY-homologous receiver domain VV1_0551 SM00091 PAS domain VV1_0551 SM00267 diguanylate cyclase VV1_0552 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_0565 SM00851 MGS-like domain VV1_0565 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV1_0566 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VV1_0569 SM00957 SecA DEAD-like domain VV1_0569 SM00958 SecA preprotein cross-linking domain VV1_0572 SM00864 Tubulin/FtsZ family, GTPase domain VV1_0572 SM00865 Tubulin/FtsZ family, C-terminal domain VV1_0574 SM00842 Cell division protein FtsA VV1_0592 SM00749 bacterial OsmY and nodulation domain VV1_0603 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VV1_0604 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VV1_0605 SM00434 DNA Topoisomerase IV VV1_0606 SM00387 Histidine kinase-like ATPases VV1_0606 SM00433 TopoisomeraseII VV1_0615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_0617 SM00880 VV1_0617 VV1_0617 SM01118 VV1_0617 VV1_0620 SM00287 Bacterial SH3 domain homologues VV1_0621 SM00382 ATPases associated with a variety of cellular activities VV1_0625 SM00905 Dihydroneopterin aldolase VV1_0626 SM01207 VV1_0626 VV1_0631 SM00400 zinc finger VV1_0631 SM00493 VV1_0631 VV1_0631 SM00766 DNA primase DnaG DnaB-binding VV1_0636 SM00563 Phosphate acyltransferases VV1_0642 SM00420 helix_turn_helix, Deoxyribose operon repressor VV1_0642 SM01134 VV1_0642 VV1_0645 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_0645 SM00895 VV1_0645 VV1_0646 SM00091 PAS domain VV1_0646 SM00267 diguanylate cyclase VV1_0652 SM00014 Acid phosphatase homologues VV1_0654 SM00917 LeuA allosteric (dimerisation) domain VV1_0655 SM01329 VV1_0655 VV1_0659 SM00271 DnaJ molecular chaperone homology domain VV1_0663 SM00650 Ribosomal RNA adenine dimethylases VV1_0678 SM00563 Phosphate acyltransferases VV1_0685 SM00382 ATPases associated with a variety of cellular activities VV1_0687 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0691 SM00382 ATPases associated with a variety of cellular activities VV1_0698 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0698 SM00924 MgtE intracellular N domain VV1_0701 SM00382 ATPases associated with a variety of cellular activities VV1_0719 SM00382 ATPases associated with a variety of cellular activities VV1_0736 SM00662 RNA polymerases D VV1_0737 SM00363 S4 RNA-binding domain VV1_0737 SM01390 VV1_0737 VV1_0750 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VV1_0751 SM01374 VV1_0751 VV1_0756 SM00322 K homology RNA-binding domain VV1_0759 SM01382 VV1_0759 VV1_0759 SM01383 VV1_0759 VV1_0763 SM01403 VV1_0763 VV1_0767 SM01276 VV1_0767 VV1_0769 SM00849 Metallo-beta-lactamase superfamily VV1_0769 SM01027 Beta-Casp domain VV1_0774 SM00984 UDP binding domain VV1_0779 SM00984 UDP binding domain VV1_0783 SM00226 Low molecular weight phosphatase family VV1_0804 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_0821 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VV1_0821 SM01232 VV1_0821 VV1_0826 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_0826 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0826 SM01049 VV1_0826 VV1_0837 SM00382 ATPases associated with a variety of cellular activities VV1_0838 SM00382 ATPases associated with a variety of cellular activities VV1_0848 SM00028 Tetratricopeptide repeats VV1_0850 SM00072 Guanylate kinase homologues. VV1_0851 SM01409 VV1_0851 VV1_0852 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_0852 SM00954 Region found in RelA / SpoT proteins VV1_0854 SM00487 DEAD-like helicases superfamily VV1_0854 SM00490 helicase superfamily c-terminal domain VV1_0857 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0857 SM00387 Histidine kinase-like ATPases VV1_0857 SM00388 His Kinase A (phosphoacceptor) domain VV1_0858 SM00448 cheY-homologous receiver domain VV1_0858 SM00862 Transcriptional regulatory protein, C terminal VV1_0860 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_0860 SM00732 Likely ribonuclease with RNase H fold. VV1_0876 SM00382 ATPases associated with a variety of cellular activities VV1_0879 SM00363 S4 RNA-binding domain VV1_0889 SM01230 VV1_0889 VV1_0891 SM00091 PAS domain VV1_0891 SM00387 Histidine kinase-like ATPases VV1_0891 SM00388 His Kinase A (phosphoacceptor) domain VV1_0892 SM00382 ATPases associated with a variety of cellular activities VV1_0892 SM00448 cheY-homologous receiver domain VV1_0893 SM00052 Putative diguanylate phosphodiesterase VV1_0893 SM00267 diguanylate cyclase VV1_0893 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_0894 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_0901 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VV1_0901 SM00474 3'-5' exonuclease VV1_0901 SM00475 5'-3' exonuclease VV1_0901 SM00482 DNA polymerase A domain VV1_0902 SM01004 Delta-aminolevulinic acid dehydratase VV1_0937 SM00357 Cold shock protein domain VV1_0937 SM00382 ATPases associated with a variety of cellular activities VV1_0937 SM00959 Rho termination factor, N-terminal domain VV1_0939 SM00487 DEAD-like helicases superfamily VV1_0939 SM00490 helicase superfamily c-terminal domain VV1_0943 SM00341 Helicase and RNase D C-terminal VV1_0943 SM00487 DEAD-like helicases superfamily VV1_0943 SM00490 helicase superfamily c-terminal domain VV1_0943 SM00956 VV1_0943 VV1_0945 SM00342 helix_turn_helix, arabinose operon control protein VV1_0959 SM00876 Biotin and Thiamin Synthesis associated domain VV1_0983 SM00829 Enoylreductase VV1_0993 SM00052 Putative diguanylate phosphodiesterase VV1_0993 SM00267 diguanylate cyclase VV1_0993 SM01079 VV1_0993 VV1_0996 SM00387 Histidine kinase-like ATPases VV1_0996 SM00433 TopoisomeraseII VV1_0998 SM00480 DNA polymerase III beta subunit VV1_0999 SM00382 ATPases associated with a variety of cellular activities VV1_0999 SM00760 Bacterial dnaA protein helix-turn-helix domain VV1_1001 SM00062 Bacterial periplasmic substrate-binding proteins VV1_1003 SM00382 ATPases associated with a variety of cellular activities VV1_1010 SM01228 VV1_1010 VV1_1013 SM00470 ParB-like nuclease domain VV1_1021 SM00382 ATPases associated with a variety of cellular activities VV1_1025 SM00062 Bacterial periplasmic substrate-binding proteins VV1_1033 SM00382 ATPases associated with a variety of cellular activities VV1_1035 SM00563 Phosphate acyltransferases VV1_1049 SM00257 Lysin motif VV1_1054 SM01001 AIR carboxylase VV1_1085 SM00382 ATPases associated with a variety of cellular activities VV1_1095 SM00220 Serine/Threonine protein kinases, catalytic domain VV1_1097 SM00448 cheY-homologous receiver domain VV1_1098 SM00354 helix_turn _helix lactose operon repressor VV1_1109 SM00344 helix_turn_helix ASNC type VV1_1110 SM00052 Putative diguanylate phosphodiesterase VV1_1110 SM00091 PAS domain VV1_1110 SM00267 diguanylate cyclase VV1_1119 SM00028 Tetratricopeptide repeats VV1_1124 SM01219 VV1_1124 VV1_1132 SM00052 Putative diguanylate phosphodiesterase VV1_1132 SM00267 diguanylate cyclase VV1_1132 SM00897 FIST N domain VV1_1132 SM01204 VV1_1132 VV1_1133 SM01144 VV1_1133 VV1_1139 SM00052 Putative diguanylate phosphodiesterase VV1_1140 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VV1_1141 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_1142 SM00404 Protein tyrosine phosphatase, catalytic domain motif VV1_1154 SM00382 ATPases associated with a variety of cellular activities VV1_1154 SM00962 SRP54-type protein, GTPase domain VV1_1154 SM00963 SRP54-type protein, helical bundle domain VV1_1155 SM00382 ATPases associated with a variety of cellular activities VV1_1160 SM00450 Rhodanese Homology Domain VV1_1165 SM00563 Phosphate acyltransferases VV1_1176 SM00360 RNA recognition motif VV1_1195 SM00155 Phospholipase D. Active site motifs. VV1_1206 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VV1_1206 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VV1_1207 SM00649 Ribosomal protein L11/L12 VV1_1212 SM00663 RNA polymerase I subunit A N-terminus VV1_1220 SM00986 Uracil DNA glycosylase superfamily VV1_1220 SM00987 UreE urease accessory protein, C-terminal domain VV1_1224 SM00411 bacterial (prokaryotic) histone like domain VV1_1226 SM01209 VV1_1226 VV1_1226 SM01210 VV1_1226 VV1_1227 SM00798 AICARFT/IMPCHase bienzyme VV1_1227 SM00851 MGS-like domain VV1_1229 SM00422 helix_turn_helix, mercury resistance VV1_1230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_1230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_1230 SM01049 VV1_1230 VV1_1234 SM00878 Biotin carboxylase C-terminal domain VV1_1238 SM00479 VV1_1238 VV1_1239 SM00100 Cyclic nucleotide-monophosphate binding domain VV1_1242 SM00387 Histidine kinase-like ATPases VV1_1242 SM00388 His Kinase A (phosphoacceptor) domain VV1_1242 SM00448 cheY-homologous receiver domain VV1_1246 SM00421 helix_turn_helix, Lux Regulon VV1_1246 SM00448 cheY-homologous receiver domain VV1_1253 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_1253 SM00387 Histidine kinase-like ATPases VV1_1253 SM00388 His Kinase A (phosphoacceptor) domain VV1_1254 SM00448 cheY-homologous receiver domain VV1_1254 SM00862 Transcriptional regulatory protein, C terminal VV1_1259 SM00883 Chaperonin 10 Kd subunit VV1_1264 SM00841 Elongation factor P, C-terminal VV1_1264 SM01185 VV1_1264 VV1_1276 SM00971 Serine acetyltransferase, N-terminal VV1_1280 SM00450 Rhodanese Homology Domain VV1_1286 SM00479 VV1_1286 VV1_1291 SM00257 Lysin motif VV1_1291 SM00646 VV1_1291 VV1_1292 SM00853 MutL C terminal dimerisation domain VV1_1292 SM01340 VV1_1292 VV1_1296 SM00244 prohibitin homologues VV1_1297 SM00244 prohibitin homologues VV1_1299 SM00788 Adenylosuccinate synthetase VV1_1300 SM00671 Sel1-like repeats. VV1_1304 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_1304 SM00357 Cold shock protein domain VV1_1304 SM00955 VV1_1304 VV1_1305 SM00967 RNA 2'-O ribose methyltransferase substrate binding VV1_1317 SM01150 VV1_1317 VV1_1318 SM00100 Cyclic nucleotide-monophosphate binding domain VV1_1318 SM00419 helix_turn_helix, cAMP Regulatory protein VV1_1323 SM00382 ATPases associated with a variety of cellular activities VV1_1330 SM00320 WD40 repeats VV1_1338 SM00838 Elongation factor G C-terminus VV1_1338 SM00889 Elongation factor G, domain IV VV1_1355 SM00382 ATPases associated with a variety of cellular activities VV1_1355 SM01086 C-terminal, D2-small domain, of ClpB protein VV1_1358 SM00354 helix_turn _helix lactose operon repressor VV1_1359 SM00487 DEAD-like helicases superfamily VV1_1359 SM00490 helicase superfamily c-terminal domain VV1_1361 SM00919 Malic enzyme, NAD binding domain VV1_1361 SM01274 VV1_1361 VV1_1371 SM00859 Semialdehyde dehydrogenase, NAD binding domain VV1_1381 SM00965 Secretin and TonB N terminus short domain VV1_1393 SM01005 Alanine racemase, C-terminal domain VV1_1420 SM00897 FIST N domain VV1_1420 SM01204 VV1_1420 VV1_1421 SM00091 PAS domain VV1_1421 SM00267 diguanylate cyclase VV1_1423 SM01018 B12 binding domain VV1_1429 SM00421 helix_turn_helix, Lux Regulon VV1_1432 SM00052 Putative diguanylate phosphodiesterase VV1_1432 SM00267 diguanylate cyclase VV1_1436 SM00965 Secretin and TonB N terminus short domain VV1_1438 SM00028 Tetratricopeptide repeats VV1_1439 SM00382 ATPases associated with a variety of cellular activities VV1_1453 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_1457 SM00670 Large family of predicted nucleotide-binding domains VV1_1459 SM00487 DEAD-like helicases superfamily VV1_1459 SM00490 helicase superfamily c-terminal domain VV1_1481 SM00495 Chitin-binding domain type 3 VV1_1487 SM00354 helix_turn _helix lactose operon repressor VV1_1489 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_1506 SM00849 Metallo-beta-lactamase superfamily VV1_1511 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_1511 SM01049 VV1_1511 VV1_1515 SM00478 endonuclease III VV1_1515 SM00525 VV1_1515 VV1_1518 SM00478 endonuclease III VV1_1519 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_1522 SM01152 VV1_1522 VV1_1528 SM00732 Likely ribonuclease with RNase H fold. VV1_1534 SM00731 SprT homologues. VV1_1537 SM00861 Transketolase, pyrimidine binding domain VV1_1539 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_1563 SM00838 Elongation factor G C-terminus VV1_1565 SM00358 Double-stranded RNA binding motif VV1_1565 SM00535 Ribonuclease III family VV1_1572 SM00267 diguanylate cyclase VV1_1573 SM00073 Histidine Phosphotransfer domain VV1_1573 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_1573 SM00387 Histidine kinase-like ATPases VV1_1573 SM00388 His Kinase A (phosphoacceptor) domain VV1_1573 SM00448 cheY-homologous receiver domain VV1_1575 SM00954 Region found in RelA / SpoT proteins VV1_1579 SM01192 VV1_1579 VV1_1579 SM01193 VV1_1579 VV1_1587 SM00257 Lysin motif VV1_1589 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VV1_1589 SM00534 ATPase domain of DNA mismatch repair MUTS family VV1_1591 SM00382 ATPases associated with a variety of cellular activities VV1_1593 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VV1_1603 SM00829 Enoylreductase VV1_1609 SM01091 Transporter associated domain VV1_1612 SM00382 ATPases associated with a variety of cellular activities VV1_1612 SM00962 SRP54-type protein, GTPase domain VV1_1612 SM00963 SRP54-type protein, helical bundle domain VV1_1628 SM00644 VV1_1628 VV1_1629 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_1629 SM00895 VV1_1629 VV1_1637 SM00947 Carbonic anhydrase VV1_1640 SM00382 ATPases associated with a variety of cellular activities VV1_1650 SM00487 DEAD-like helicases superfamily VV1_1650 SM00490 helicase superfamily c-terminal domain VV1_1650 SM00847 Helicase associated domain (HA2) Add an annotation VV1_1658 SM00938 Nitrogen regulatory protein P-II VV1_1663 SM00382 ATPases associated with a variety of cellular activities VV1_1665 SM01068 Putative carbohydrate binding domain VV1_1669 SM00382 ATPases associated with a variety of cellular activities VV1_1670 SM00382 ATPases associated with a variety of cellular activities VV1_1674 SM00091 PAS domain VV1_1674 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_1674 SM00387 Histidine kinase-like ATPases VV1_1674 SM00388 His Kinase A (phosphoacceptor) domain VV1_1674 SM00448 cheY-homologous receiver domain VV1_1688 SM01103 VV1_1688 VV1_1690 SM00382 ATPases associated with a variety of cellular activities VV1_1695 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_1701 SM01387 VV1_1701 VV1_1708 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_1708 SM00322 K homology RNA-binding domain VV1_1709 SM00028 Tetratricopeptide repeats VV1_1710 SM00347 helix_turn_helix multiple antibiotic resistance protein VV1_1714 SM00052 Putative diguanylate phosphodiesterase VV1_1714 SM00091 PAS domain VV1_1714 SM00267 diguanylate cyclase VV1_1719 SM00052 Putative diguanylate phosphodiesterase VV1_1719 SM00267 diguanylate cyclase VV1_1720 SM00267 diguanylate cyclase VV1_1725 SM01133 VV1_1725 VV1_1726 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VV1_1732 SM00382 ATPases associated with a variety of cellular activities VV1_1733 SM00267 diguanylate cyclase VV1_1737 SM00838 Elongation factor G C-terminus VV1_1737 SM00889 Elongation factor G, domain IV VV1_1743 SM00342 helix_turn_helix, arabinose operon control protein VV1_1748 SM00858 VV1_1748 VV1_1758 SM00028 Tetratricopeptide repeats VV1_1767 SM01038 Beta galactosidase small chain VV1_1769 SM00354 helix_turn _helix lactose operon repressor VV1_1774 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_1774 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_1774 SM01049 VV1_1774 VV1_1775 SM00354 helix_turn _helix lactose operon repressor VV1_1786 SM00420 helix_turn_helix, Deoxyribose operon repressor VV1_1786 SM01134 VV1_1786 VV1_1801 SM00925 MltA specific insert domain VV1_1805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_1807 SM00342 helix_turn_helix, arabinose operon control protein VV1_1823 SM00900 VV1_1823 VV1_1829 SM00267 diguanylate cyclase VV1_1829 SM00448 cheY-homologous receiver domain VV1_1831 SM00487 DEAD-like helicases superfamily VV1_1831 SM00490 helicase superfamily c-terminal domain VV1_1833 SM00495 Chitin-binding domain type 3 VV1_1833 SM00636 VV1_1833 VV1_1844 SM00849 Metallo-beta-lactamase superfamily VV1_1857 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_1867 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VV1_1869 SM00935 Outer membrane protein (OmpH-like) VV1_1875 SM00481 DNA polymerase alpha chain like domain VV1_1877 SM00977 TilS substrate C-terminal domain VV1_1879 SM00938 Nitrogen regulatory protein P-II VV1_1882 SM00257 Lysin motif VV1_1883 SM00849 Metallo-beta-lactamase superfamily VV1_1887 SM00479 VV1_1887 VV1_1907 SM00028 Tetratricopeptide repeats VV1_1912 SM01130 VV1_1912 VV1_1931 SM00382 ATPases associated with a variety of cellular activities VV1_1932 SM00387 Histidine kinase-like ATPases VV1_1932 SM00388 His Kinase A (phosphoacceptor) domain VV1_1933 SM00382 ATPases associated with a variety of cellular activities VV1_1933 SM00448 cheY-homologous receiver domain VV1_1938 SM00382 ATPases associated with a variety of cellular activities VV1_1950 SM00382 ATPases associated with a variety of cellular activities VV1_1950 SM00962 SRP54-type protein, GTPase domain VV1_1953 SM00448 cheY-homologous receiver domain VV1_1955 SM00073 Histidine Phosphotransfer domain VV1_1955 SM00260 Two component signalling adaptor domain VV1_1955 SM00387 Histidine kinase-like ATPases VV1_1955 SM01231 VV1_1955 VV1_1956 SM00448 cheY-homologous receiver domain VV1_1958 SM00260 Two component signalling adaptor domain VV1_1959 SM00260 Two component signalling adaptor domain VV1_1961 SM00382 ATPases associated with a variety of cellular activities VV1_1978 SM00855 Phosphoglycerate mutase family VV1_1979 SM00463 Small MutS-related domain VV1_1986 SM00825 Beta-ketoacyl synthase VV1_1989 SM00859 Semialdehyde dehydrogenase, NAD binding domain VV1_1999 SM00448 cheY-homologous receiver domain VV1_2003 SM00382 ATPases associated with a variety of cellular activities VV1_2005 SM00493 VV1_2005 VV1_2008 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2008 SM00387 Histidine kinase-like ATPases VV1_2008 SM00388 His Kinase A (phosphoacceptor) domain VV1_2009 SM00448 cheY-homologous receiver domain VV1_2009 SM00862 Transcriptional regulatory protein, C terminal VV1_2018 SM00098 Alkaline phosphatase homologues VV1_2037 SM00487 DEAD-like helicases superfamily VV1_2038 SM00530 Helix-turn-helix XRE-family like proteins VV1_2053 SM00267 diguanylate cyclase VV1_2055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2058 SM00862 Transcriptional regulatory protein, C terminal VV1_2061 SM00267 diguanylate cyclase VV1_2062 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_2066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2066 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2078 SM00487 DEAD-like helicases superfamily VV1_2078 SM00490 helicase superfamily c-terminal domain VV1_2078 SM00982 VV1_2078 VV1_2078 SM01058 CarD-like/TRCF domain VV1_2081 SM00382 ATPases associated with a variety of cellular activities VV1_2084 SM00849 Metallo-beta-lactamase superfamily VV1_2085 SM00382 ATPases associated with a variety of cellular activities VV1_2089 SM00267 diguanylate cyclase VV1_2092 SM00763 PrkA AAA domain VV1_2096 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2096 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2101 SM00382 ATPases associated with a variety of cellular activities VV1_2102 SM00062 Bacterial periplasmic substrate-binding proteins VV1_2102 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VV1_2105 SM01276 VV1_2105 VV1_2107 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2107 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2113 SM00491 VV1_2113 VV1_2119 SM00357 Cold shock protein domain VV1_2121 SM00382 ATPases associated with a variety of cellular activities VV1_2121 SM01086 C-terminal, D2-small domain, of ClpB protein VV1_2123 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_2130 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VV1_2130 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VV1_2130 SM00493 VV1_2130 VV1_2138 SM00354 helix_turn _helix lactose operon repressor VV1_2140 SM00448 cheY-homologous receiver domain VV1_2140 SM00862 Transcriptional regulatory protein, C terminal VV1_2146 SM00342 helix_turn_helix, arabinose operon control protein VV1_2158 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2159 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VV1_2160 SM00382 ATPases associated with a variety of cellular activities VV1_2172 SM00028 Tetratricopeptide repeats VV1_2179 SM00387 Histidine kinase-like ATPases VV1_2179 SM00388 His Kinase A (phosphoacceptor) domain VV1_2179 SM00448 cheY-homologous receiver domain VV1_2188 SM00487 DEAD-like helicases superfamily VV1_2188 SM00490 helicase superfamily c-terminal domain VV1_2191 SM00530 Helix-turn-helix XRE-family like proteins VV1_2199 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2208 SM00342 helix_turn_helix, arabinose operon control protein VV1_2211 SM00052 Putative diguanylate phosphodiesterase VV1_2211 SM00267 diguanylate cyclase VV1_2211 SM01049 VV1_2211 VV1_2212 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_2213 SM00052 Putative diguanylate phosphodiesterase VV1_2213 SM00091 PAS domain VV1_2214 SM00052 Putative diguanylate phosphodiesterase VV1_2214 SM00091 PAS domain VV1_2226 SM00382 ATPases associated with a variety of cellular activities VV1_2227 SM00642 Alpha-amylase domain VV1_2228 SM00267 diguanylate cyclase VV1_2233 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_2240 SM00387 Histidine kinase-like ATPases VV1_2240 SM01049 VV1_2240 VV1_2241 SM00421 helix_turn_helix, Lux Regulon VV1_2241 SM00448 cheY-homologous receiver domain VV1_2242 SM00347 helix_turn_helix multiple antibiotic resistance protein VV1_2244 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2245 SM00479 VV1_2245 VV1_2246 SM00100 Cyclic nucleotide-monophosphate binding domain VV1_2246 SM00116 Domain in cystathionine beta-synthase and other proteins. VV1_2249 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_2252 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_2255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2259 SM00052 Putative diguanylate phosphodiesterase VV1_2264 SM00387 Histidine kinase-like ATPases VV1_2264 SM00388 His Kinase A (phosphoacceptor) domain VV1_2264 SM00448 cheY-homologous receiver domain VV1_2270 SM00091 PAS domain VV1_2270 SM00382 ATPases associated with a variety of cellular activities VV1_2275 SM00100 Cyclic nucleotide-monophosphate binding domain VV1_2275 SM00387 Histidine kinase-like ATPases VV1_2276 SM00448 cheY-homologous receiver domain VV1_2277 SM00267 diguanylate cyclase VV1_2278 SM00052 Putative diguanylate phosphodiesterase VV1_2278 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV1_2278 SM00267 diguanylate cyclase VV1_2280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_2281 SM00052 Putative diguanylate phosphodiesterase VV1_2281 SM00267 diguanylate cyclase VV1_2287 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VV1_2288 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_2292 SM00046 Diacylglycerol kinase catalytic domain (presumed) VV1_2299 SM00382 ATPases associated with a variety of cellular activities VV1_2300 SM00382 ATPases associated with a variety of cellular activities VV1_2315 SM00267 diguanylate cyclase VV1_2321 SM00267 diguanylate cyclase VV1_2321 SM01079 VV1_2321 VV1_2322 SM00479 VV1_2322 VV1_2330 SM00858 VV1_2330 VV1_2337 SM00028 Tetratricopeptide repeats VV1_2342 SM00636 VV1_2342 VV1_2343 SM00382 ATPases associated with a variety of cellular activities VV1_2343 SM00487 DEAD-like helicases superfamily VV1_2343 SM00490 helicase superfamily c-terminal domain VV1_2343 SM00847 Helicase associated domain (HA2) Add an annotation VV1_2354 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2362 SM00530 Helix-turn-helix XRE-family like proteins VV1_2369 SM00267 diguanylate cyclase VV1_2371 SM00873 B3/4 domain VV1_2371 SM00874 tRNA synthetase B5 domain VV1_2371 SM00896 Ferredoxin-fold anticodon binding domain VV1_2375 SM00411 bacterial (prokaryotic) histone like domain VV1_2376 SM00954 Region found in RelA / SpoT proteins VV1_2381 SM00671 Sel1-like repeats. VV1_2387 SM00020 Trypsin-like serine protease VV1_2393 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_2393 SM00866 VV1_2393 VV1_2397 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VV1_2466 SM00382 ATPases associated with a variety of cellular activities VV1_2493 SM00671 Sel1-like repeats. VV1_2497 SM00530 Helix-turn-helix XRE-family like proteins VV1_2503 SM00978 VV1_2503 VV1_2511 SM00954 Region found in RelA / SpoT proteins VV1_2522 SM01040 BRO family, N-terminal domain VV1_2528 SM01022 VV1_2528 VV1_2532 SM00357 Cold shock protein domain VV1_2563 SM00448 cheY-homologous receiver domain VV1_2564 SM00267 diguanylate cyclase VV1_2567 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2569 SM01144 VV1_2569 VV1_2572 SM00852 Probable molybdopterin binding domain VV1_2574 SM00382 ATPases associated with a variety of cellular activities VV1_2577 SM00382 ATPases associated with a variety of cellular activities VV1_2577 SM00448 cheY-homologous receiver domain VV1_2578 SM00387 Histidine kinase-like ATPases VV1_2578 SM00388 His Kinase A (phosphoacceptor) domain VV1_2581 SM00382 ATPases associated with a variety of cellular activities VV1_2583 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2583 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VV1_2604 SM00382 ATPases associated with a variety of cellular activities VV1_2610 SM00100 Cyclic nucleotide-monophosphate binding domain VV1_2610 SM00419 helix_turn_helix, cAMP Regulatory protein VV1_2621 SM00897 FIST N domain VV1_2621 SM01204 VV1_2621 VV1_2622 SM00387 Histidine kinase-like ATPases VV1_2622 SM00388 His Kinase A (phosphoacceptor) domain VV1_2622 SM00448 cheY-homologous receiver domain VV1_2632 SM00382 ATPases associated with a variety of cellular activities VV1_2635 SM00981 VV1_2635 VV1_2643 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VV1_2643 SM00245 tail specific protease VV1_2644 SM00945 ProQ/FINO family VV1_2646 SM00382 ATPases associated with a variety of cellular activities VV1_2656 SM00028 Tetratricopeptide repeats VV1_2656 SM00267 diguanylate cyclase VV1_2663 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2663 SM00387 Histidine kinase-like ATPases VV1_2663 SM00388 His Kinase A (phosphoacceptor) domain VV1_2663 SM00448 cheY-homologous receiver domain VV1_2664 SM00382 ATPases associated with a variety of cellular activities VV1_2664 SM00448 cheY-homologous receiver domain VV1_2682 SM01350 VV1_2682 VV1_2685 SM00448 cheY-homologous receiver domain VV1_2686 SM00091 PAS domain VV1_2686 SM00387 Histidine kinase-like ATPases VV1_2692 SM00421 helix_turn_helix, Lux Regulon VV1_2699 SM00563 Phosphate acyltransferases VV1_2703 SM00062 Bacterial periplasmic substrate-binding proteins VV1_2706 SM00382 ATPases associated with a variety of cellular activities VV1_2712 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2713 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VV1_2719 SM00028 Tetratricopeptide repeats VV1_2719 SM00267 diguanylate cyclase VV1_2723 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2723 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2725 SM00020 Trypsin-like serine protease VV1_2725 SM00495 Chitin-binding domain type 3 VV1_2733 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV1_2733 SM00895 VV1_2733 VV1_2734 SM00062 Bacterial periplasmic substrate-binding proteins VV1_2734 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2734 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_2744 SM00421 helix_turn_helix, Lux Regulon VV1_2745 SM00020 Trypsin-like serine protease VV1_2747 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2747 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2748 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV1_2752 SM00382 ATPases associated with a variety of cellular activities VV1_2753 SM00420 helix_turn_helix, Deoxyribose operon repressor VV1_2753 SM01134 VV1_2753 VV1_2757 SM00357 Cold shock protein domain VV1_2759 SM00267 diguanylate cyclase VV1_2764 SM00062 Bacterial periplasmic substrate-binding proteins VV1_2773 SM00028 Tetratricopeptide repeats VV1_2781 SM00382 ATPases associated with a variety of cellular activities VV1_2785 SM00855 Phosphoglycerate mutase family VV1_2800 SM00487 DEAD-like helicases superfamily VV1_2800 SM00490 helicase superfamily c-terminal domain VV1_2800 SM00847 Helicase associated domain (HA2) Add an annotation VV1_2801 SM00919 Malic enzyme, NAD binding domain VV1_2801 SM01274 VV1_2801 VV1_2806 SM00267 diguanylate cyclase VV1_2811 SM00382 ATPases associated with a variety of cellular activities VV1_2812 SM00382 ATPases associated with a variety of cellular activities VV1_2815 SM00387 Histidine kinase-like ATPases VV1_2838 SM00382 ATPases associated with a variety of cellular activities VV1_2843 SM00363 S4 RNA-binding domain VV1_2845 SM00487 DEAD-like helicases superfamily VV1_2845 SM00490 helicase superfamily c-terminal domain VV1_2847 SM00448 cheY-homologous receiver domain VV1_2847 SM00862 Transcriptional regulatory protein, C terminal VV1_2848 SM00387 Histidine kinase-like ATPases VV1_2854 SM00267 diguanylate cyclase VV1_2861 SM00382 ATPases associated with a variety of cellular activities VV1_2863 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV1_2863 SM00382 ATPases associated with a variety of cellular activities VV1_2868 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_2868 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV1_2871 SM00155 Phospholipase D. Active site motifs. VV1_2880 SM00382 ATPases associated with a variety of cellular activities VV1_2884 SM00382 ATPases associated with a variety of cellular activities VV1_2885 SM00382 ATPases associated with a variety of cellular activities VV1_2888 SM01131 VV1_2888 VV1_2908 SM00840 VV1_2908 VV1_2911 SM00052 Putative diguanylate phosphodiesterase VV1_2923 SM00528 Domain in histone-like proteins of HNS family VV1_2943 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_2943 SM00876 Biotin and Thiamin Synthesis associated domain VV1_2947 SM00382 ATPases associated with a variety of cellular activities VV1_2950 SM00843 VV1_2950 VV1_2951 SM00344 helix_turn_helix ASNC type VV1_2952 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VV1_2952 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VV1_2962 SM00849 Metallo-beta-lactamase superfamily VV1_2972 SM00382 ATPases associated with a variety of cellular activities VV1_2973 SM00382 ATPases associated with a variety of cellular activities VV1_2977 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VV1_2978 SM00028 Tetratricopeptide repeats VV1_2980 SM00411 bacterial (prokaryotic) histone like domain VV1_2982 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_2986 SM00822 VV1_2986 VV1_2989 SM00481 DNA polymerase alpha chain like domain VV1_2990 SM00260 Two component signalling adaptor domain VV1_2990 SM00448 cheY-homologous receiver domain VV1_3009 SM00822 VV1_3009 VV1_3010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VV1_3016 SM00363 S4 RNA-binding domain VV1_3018 SM00316 Ribosomal protein S1-like RNA-binding domain VV1_3021 SM00226 Low molecular weight phosphatase family VV1_3038 SM00434 DNA Topoisomerase IV VV1_3044 SM00852 Probable molybdopterin binding domain VV1_3053 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VV1_3053 SM00465 GIY-YIG type nucleases (URI domain) VV1_3054 SM00421 helix_turn_helix, Lux Regulon VV1_3054 SM00448 cheY-homologous receiver domain VV1_3055 SM00486 DNA polymerase type-B family VV1_3056 SM00052 Putative diguanylate phosphodiesterase VV1_3058 SM00841 Elongation factor P, C-terminal VV1_3058 SM01185 VV1_3058 VV1_3060 SM00363 S4 RNA-binding domain VV1_3063 SM00481 DNA polymerase alpha chain like domain VV1_3078 SM00382 ATPases associated with a variety of cellular activities VV1_3079 SM00382 ATPases associated with a variety of cellular activities VV1_3087 SM00852 Probable molybdopterin binding domain VV1_3088 SM00729 Elongator protein 3, MiaB family, Radical SAM VV1_3091 SM00382 ATPases associated with a variety of cellular activities VV1_3091 SM00448 cheY-homologous receiver domain VV1_3092 SM00487 DEAD-like helicases superfamily VV1_3092 SM00490 helicase superfamily c-terminal domain VV1_3097 SM00900 VV1_3097 VV1_3099 SM00478 endonuclease III VV1_3099 SM00525 VV1_3099 VV1_3103 SM00479 VV1_3103 VV1_3115 SM00859 Semialdehyde dehydrogenase, NAD binding domain VV1_3126 SM00155 Phospholipase D. Active site motifs. VV1_3127 SM00267 diguanylate cyclase VV1_3127 SM00448 cheY-homologous receiver domain VV1_3128 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV1_3128 SM00387 Histidine kinase-like ATPases VV1_3128 SM00388 His Kinase A (phosphoacceptor) domain VV1_3128 SM00448 cheY-homologous receiver domain VV1_3130 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VV1_3130 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VV1_3130 SM00493 VV1_3130 VV1_3135 SM00870 VV1_3135 VV1_3140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV1_3142 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV1_3146 SM00062 Bacterial periplasmic substrate-binding proteins VV1_3146 SM00267 diguanylate cyclase VV1_3152 SM00344 helix_turn_helix ASNC type VV1_3163 SM00978 VV1_3163 VV1_3165 SM00563 Phosphate acyltransferases VV1_3169 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VV1_3188 SM00487 DEAD-like helicases superfamily VV1_3190 SM00530 Helix-turn-helix XRE-family like proteins VV1_3197 SM00155 Phospholipase D. Active site motifs. VV1_3201 SM00448 cheY-homologous receiver domain VV1_3202 SM00387 Histidine kinase-like ATPases VV1_3202 SM00388 His Kinase A (phosphoacceptor) domain VV1_3202 SM00448 cheY-homologous receiver domain VV1_3203 SM00052 Putative diguanylate phosphodiesterase VV1_3203 SM00448 cheY-homologous receiver domain VV1_3252 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_0002 SM00382 ATPases associated with a variety of cellular activities VV2_0022 SM00450 Rhodanese Homology Domain VV2_0042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0047 SM01022 VV2_0047 VV2_0048 SM00014 Acid phosphatase homologues VV2_0055 SM00382 ATPases associated with a variety of cellular activities VV2_0056 SM00327 von Willebrand factor (vWF) type A domain VV2_0062 SM00382 ATPases associated with a variety of cellular activities VV2_0066 SM00354 helix_turn _helix lactose operon repressor VV2_0068 SM00260 Two component signalling adaptor domain VV2_0068 SM00448 cheY-homologous receiver domain VV2_0072 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV2_0072 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0077 SM00091 PAS domain VV2_0077 SM00387 Histidine kinase-like ATPases VV2_0077 SM00388 His Kinase A (phosphoacceptor) domain VV2_0077 SM00448 cheY-homologous receiver domain VV2_0078 SM00448 cheY-homologous receiver domain VV2_0078 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_0095 SM00327 von Willebrand factor (vWF) type A domain VV2_0103 SM00091 PAS domain VV2_0103 SM00387 Histidine kinase-like ATPases VV2_0104 SM00448 cheY-homologous receiver domain VV2_0105 SM01266 VV2_0105 VV2_0112 SM00382 ATPases associated with a variety of cellular activities VV2_0113 SM00422 helix_turn_helix, mercury resistance VV2_0123 SM00851 MGS-like domain VV2_0125 SM00073 Histidine Phosphotransfer domain VV2_0125 SM00387 Histidine kinase-like ATPases VV2_0125 SM00388 His Kinase A (phosphoacceptor) domain VV2_0125 SM00448 cheY-homologous receiver domain VV2_0136 SM00487 DEAD-like helicases superfamily VV2_0136 SM00490 helicase superfamily c-terminal domain VV2_0137 SM00062 Bacterial periplasmic substrate-binding proteins VV2_0137 SM00387 Histidine kinase-like ATPases VV2_0137 SM00388 His Kinase A (phosphoacceptor) domain VV2_0137 SM00448 cheY-homologous receiver domain VV2_0138 SM00052 Putative diguanylate phosphodiesterase VV2_0138 SM00421 helix_turn_helix, Lux Regulon VV2_0138 SM00448 cheY-homologous receiver domain VV2_0139 SM00448 cheY-homologous receiver domain VV2_0141 SM00052 Putative diguanylate phosphodiesterase VV2_0141 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV2_0141 SM00267 diguanylate cyclase VV2_0142 SM00635 Bacterial Ig-like domain 2 VV2_0145 SM00342 helix_turn_helix, arabinose operon control protein VV2_0146 SM00316 Ribosomal protein S1-like RNA-binding domain VV2_0146 SM00357 Cold shock protein domain VV2_0146 SM00955 VV2_0146 VV2_0147 SM00487 DEAD-like helicases superfamily VV2_0147 SM00490 helicase superfamily c-terminal domain VV2_0157 SM00327 von Willebrand factor (vWF) type A domain VV2_0164 SM00028 Tetratricopeptide repeats VV2_0165 SM00990 VV2_0165 VV2_0179 SM00382 ATPases associated with a variety of cellular activities VV2_0189 SM00530 Helix-turn-helix XRE-family like proteins VV2_0191 SM00020 Trypsin-like serine protease VV2_0201 SM00354 helix_turn _helix lactose operon repressor VV2_0205 SM00052 Putative diguanylate phosphodiesterase VV2_0209 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0209 SM00387 Histidine kinase-like ATPases VV2_0209 SM00388 His Kinase A (phosphoacceptor) domain VV2_0210 SM00448 cheY-homologous receiver domain VV2_0212 SM00342 helix_turn_helix, arabinose operon control protein VV2_0213 SM00495 Chitin-binding domain type 3 VV2_0213 SM00636 VV2_0213 VV2_0221 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_0224 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0227 SM00487 DEAD-like helicases superfamily VV2_0227 SM00490 helicase superfamily c-terminal domain VV2_0228 SM00052 Putative diguanylate phosphodiesterase VV2_0231 SM00867 YceI-like domain VV2_0232 SM00116 Domain in cystathionine beta-synthase and other proteins. VV2_0245 SM00782 PhnA Zinc-Ribbon VV2_0256 SM00642 Alpha-amylase domain VV2_0261 SM00271 DnaJ molecular chaperone homology domain VV2_0264 SM00052 Putative diguanylate phosphodiesterase VV2_0264 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV2_0264 SM00267 diguanylate cyclase VV2_0267 SM00382 ATPases associated with a variety of cellular activities VV2_0271 SM00797 Allophanate hydrolase subunit 2 VV2_0272 SM00796 Allophanate hydrolase subunit 1 VV2_0275 SM00091 PAS domain VV2_0275 SM00267 diguanylate cyclase VV2_0278 SM00881 CoA binding domain VV2_0313 SM00448 cheY-homologous receiver domain VV2_0313 SM00862 Transcriptional regulatory protein, C terminal VV2_0314 SM00387 Histidine kinase-like ATPases VV2_0314 SM00388 His Kinase A (phosphoacceptor) domain VV2_0317 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VV2_0317 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VV2_0320 SM00267 diguanylate cyclase VV2_0322 SM00267 diguanylate cyclase VV2_0322 SM00448 cheY-homologous receiver domain VV2_0325 SM00347 helix_turn_helix multiple antibiotic resistance protein VV2_0327 SM00382 ATPases associated with a variety of cellular activities VV2_0335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0344 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VV2_0346 SM00450 Rhodanese Homology Domain VV2_0352 SM00342 helix_turn_helix, arabinose operon control protein VV2_0356 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0356 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0356 SM01049 VV2_0356 VV2_0359 SM00028 Tetratricopeptide repeats VV2_0372 SM00091 PAS domain VV2_0372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0376 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0376 SM00387 Histidine kinase-like ATPases VV2_0376 SM00388 His Kinase A (phosphoacceptor) domain VV2_0376 SM00448 cheY-homologous receiver domain VV2_0377 SM00138 Methyltransferase, chemotaxis proteins VV2_0379 SM00267 diguanylate cyclase VV2_0379 SM00448 cheY-homologous receiver domain VV2_0382 SM00487 DEAD-like helicases superfamily VV2_0382 SM00490 helicase superfamily c-terminal domain VV2_0385 SM00833 Cobalamin synthesis protein cobW C-terminal domain VV2_0387 SM00028 Tetratricopeptide repeats VV2_0387 SM00267 diguanylate cyclase VV2_0391 SM00382 ATPases associated with a variety of cellular activities VV2_0394 SM01012 VV2_0394 VV2_0398 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VV2_0400 SM00642 Alpha-amylase domain VV2_0401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0402 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0402 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0404 SM00458 Ricin-type beta-trefoil VV2_0430 SM00382 ATPases associated with a variety of cellular activities VV2_0430 SM01086 C-terminal, D2-small domain, of ClpB protein VV2_0439 SM00331 Sigma factor PP2C-like phosphatases VV2_0439 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VV2_0445 SM00240 Forkhead associated domain VV2_0446 SM00220 Serine/Threonine protein kinases, catalytic domain VV2_0453 SM00052 Putative diguanylate phosphodiesterase VV2_0453 SM00267 diguanylate cyclase VV2_0464 SM00387 Histidine kinase-like ATPases VV2_0465 SM00448 cheY-homologous receiver domain VV2_0465 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_0470 SM00861 Transketolase, pyrimidine binding domain VV2_0473 SM00893 Electron transfer flavoprotein domain VV2_0474 SM00893 Electron transfer flavoprotein domain VV2_0477 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0477 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0478 SM01005 Alanine racemase, C-terminal domain VV2_0482 SM00382 ATPases associated with a variety of cellular activities VV2_0484 SM00382 ATPases associated with a variety of cellular activities VV2_0488 SM00822 VV2_0488 VV2_0495 SM00422 helix_turn_helix, mercury resistance VV2_0503 SM00357 Cold shock protein domain VV2_0507 SM00829 Enoylreductase VV2_0511 SM00421 helix_turn_helix, Lux Regulon VV2_0511 SM00448 cheY-homologous receiver domain VV2_0512 SM00387 Histidine kinase-like ATPases VV2_0516 SM00062 Bacterial periplasmic substrate-binding proteins VV2_0516 SM00267 diguanylate cyclase VV2_0519 SM00357 Cold shock protein domain VV2_0520 SM01322 VV2_0520 VV2_0528 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0528 SM01358 VV2_0528 VV2_0544 SM00852 Probable molybdopterin binding domain VV2_0547 SM00450 Rhodanese Homology Domain VV2_0548 SM00052 Putative diguanylate phosphodiesterase VV2_0548 SM00267 diguanylate cyclase VV2_0549 SM00636 VV2_0549 VV2_0553 SM00861 Transketolase, pyrimidine binding domain VV2_0556 SM00052 Putative diguanylate phosphodiesterase VV2_0556 SM00267 diguanylate cyclase VV2_0556 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0557 SM00091 PAS domain VV2_0557 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0572 SM00342 helix_turn_helix, arabinose operon control protein VV2_0576 SM00347 helix_turn_helix multiple antibiotic resistance protein VV2_0581 SM00052 Putative diguanylate phosphodiesterase VV2_0581 SM00267 diguanylate cyclase VV2_0588 SM00052 Putative diguanylate phosphodiesterase VV2_0588 SM00267 diguanylate cyclase VV2_0595 SM01119 VV2_0595 VV2_0598 SM00382 ATPases associated with a variety of cellular activities VV2_0605 SM00347 helix_turn_helix multiple antibiotic resistance protein VV2_0608 SM00487 DEAD-like helicases superfamily VV2_0608 SM00490 helicase superfamily c-terminal domain VV2_0650 SM01252 VV2_0650 VV2_0663 SM00382 ATPases associated with a variety of cellular activities VV2_0670 SM00244 prohibitin homologues VV2_0671 SM00244 prohibitin homologues VV2_0683 SM00382 ATPases associated with a variety of cellular activities VV2_0688 SM00382 ATPases associated with a variety of cellular activities VV2_0699 SM00833 Cobalamin synthesis protein cobW C-terminal domain VV2_0702 SM00155 Phospholipase D. Active site motifs. VV2_0712 SM01240 VV2_0712 VV2_0716 SM00448 cheY-homologous receiver domain VV2_0718 SM00421 helix_turn_helix, Lux Regulon VV2_0718 SM00448 cheY-homologous receiver domain VV2_0719 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0719 SM00387 Histidine kinase-like ATPases VV2_0721 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VV2_0730 SM01130 VV2_0730 VV2_0749 SM00344 helix_turn_helix ASNC type VV2_0752 SM00387 Histidine kinase-like ATPases VV2_0752 SM00388 His Kinase A (phosphoacceptor) domain VV2_0752 SM00448 cheY-homologous receiver domain VV2_0761 SM00387 Histidine kinase-like ATPases VV2_0761 SM00388 His Kinase A (phosphoacceptor) domain VV2_0761 SM00448 cheY-homologous receiver domain VV2_0764 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV2_0768 SM00788 Adenylosuccinate synthetase VV2_0773 SM00344 helix_turn_helix ASNC type VV2_0776 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV2_0778 SM00387 Histidine kinase-like ATPases VV2_0778 SM00388 His Kinase A (phosphoacceptor) domain VV2_0779 SM00448 cheY-homologous receiver domain VV2_0779 SM00862 Transcriptional regulatory protein, C terminal VV2_0782 SM00342 helix_turn_helix, arabinose operon control protein VV2_0785 SM00924 MgtE intracellular N domain VV2_0787 SM00342 helix_turn_helix, arabinose operon control protein VV2_0787 SM00871 Bacterial transcription activator, effector binding domain VV2_0794 SM00382 ATPases associated with a variety of cellular activities VV2_0803 SM00327 von Willebrand factor (vWF) type A domain VV2_0803 SM00609 Vault protein Inter-alpha-Trypsin domain VV2_0804 SM00563 Phosphate acyltransferases VV2_0809 SM00849 Metallo-beta-lactamase superfamily VV2_0811 SM00052 Putative diguanylate phosphodiesterase VV2_0815 SM00382 ATPases associated with a variety of cellular activities VV2_0816 SM00062 Bacterial periplasmic substrate-binding proteins VV2_0820 SM00495 Chitin-binding domain type 3 VV2_0821 SM00052 Putative diguanylate phosphodiesterase VV2_0823 SM00062 Bacterial periplasmic substrate-binding proteins VV2_0825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0826 SM00062 Bacterial periplasmic substrate-binding proteins VV2_0830 SM00823 Phosphopantetheine attachment site VV2_0839 SM00830 Chorismate mutase type II VV2_0848 SM00849 Metallo-beta-lactamase superfamily VV2_0856 SM00382 ATPases associated with a variety of cellular activities VV2_0859 SM00354 helix_turn _helix lactose operon repressor VV2_0867 SM01091 Transporter associated domain VV2_0870 SM00382 ATPases associated with a variety of cellular activities VV2_0871 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV2_0871 SM00091 PAS domain VV2_0871 SM00267 diguanylate cyclase VV2_0877 SM00421 helix_turn_helix, Lux Regulon VV2_0885 SM00849 Metallo-beta-lactamase superfamily VV2_0887 SM00028 Tetratricopeptide repeats VV2_0894 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VV2_0903 SM00642 Alpha-amylase domain VV2_0907 SM00248 ankyrin repeats VV2_0915 SM00346 helix_turn_helix isocitrate lyase regulation VV2_0916 SM00116 Domain in cystathionine beta-synthase and other proteins. VV2_0917 SM00479 VV2_0917 VV2_0931 SM00387 Histidine kinase-like ATPases VV2_0931 SM00388 His Kinase A (phosphoacceptor) domain VV2_0931 SM00448 cheY-homologous receiver domain VV2_0934 SM00342 helix_turn_helix, arabinose operon control protein VV2_0936 SM00422 helix_turn_helix, mercury resistance VV2_0940 SM00267 diguanylate cyclase VV2_0940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0942 SM00838 Elongation factor G C-terminus VV2_0942 SM00889 Elongation factor G, domain IV VV2_0956 SM00342 helix_turn_helix, arabinose operon control protein VV2_0968 SM00487 DEAD-like helicases superfamily VV2_0968 SM00490 helicase superfamily c-terminal domain VV2_0979 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_0979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0980 SM00073 Histidine Phosphotransfer domain VV2_0980 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV2_0980 SM00091 PAS domain VV2_0980 SM00387 Histidine kinase-like ATPases VV2_0980 SM00388 His Kinase A (phosphoacceptor) domain VV2_0980 SM00448 cheY-homologous receiver domain VV2_0981 SM00448 cheY-homologous receiver domain VV2_0981 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_0986 SM00382 ATPases associated with a variety of cellular activities VV2_0986 SM00448 cheY-homologous receiver domain VV2_0987 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VV2_0987 SM00387 Histidine kinase-like ATPases VV2_0989 SM00849 Metallo-beta-lactamase superfamily VV2_0991 SM00448 cheY-homologous receiver domain VV2_0991 SM00862 Transcriptional regulatory protein, C terminal VV2_0992 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_0992 SM00387 Histidine kinase-like ATPases VV2_0992 SM00388 His Kinase A (phosphoacceptor) domain VV2_1000 SM00267 diguanylate cyclase VV2_1003 SM00479 VV2_1003 VV2_1004 SM00382 ATPases associated with a variety of cellular activities VV2_1011 SM00382 ATPases associated with a variety of cellular activities VV2_1014 SM00895 VV2_1014 VV2_1025 SM00420 helix_turn_helix, Deoxyribose operon repressor VV2_1025 SM01134 VV2_1025 VV2_1026 SM00420 helix_turn_helix, Deoxyribose operon repressor VV2_1026 SM01134 VV2_1026 VV2_1028 SM00342 helix_turn_helix, arabinose operon control protein VV2_1032 SM00849 Metallo-beta-lactamase superfamily VV2_1036 SM00671 Sel1-like repeats. VV2_1042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1046 SM00342 helix_turn_helix, arabinose operon control protein VV2_1052 SM00344 helix_turn_helix ASNC type VV2_1053 SM00342 helix_turn_helix, arabinose operon control protein VV2_1060 SM00354 helix_turn _helix lactose operon repressor VV2_1063 SM00487 DEAD-like helicases superfamily VV2_1063 SM00490 helicase superfamily c-terminal domain VV2_1065 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV2_1065 SM00895 VV2_1065 VV2_1079 SM00420 helix_turn_helix, Deoxyribose operon repressor VV2_1079 SM01134 VV2_1079 VV2_1082 SM01007 Class II Aldolase and Adducin N-terminal domain VV2_1084 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VV2_1089 SM00382 ATPases associated with a variety of cellular activities VV2_1099 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1100 SM00382 ATPases associated with a variety of cellular activities VV2_1112 SM00344 helix_turn_helix ASNC type VV2_1119 SM00342 helix_turn_helix, arabinose operon control protein VV2_1121 SM00421 helix_turn_helix, Lux Regulon VV2_1123 SM00387 Histidine kinase-like ATPases VV2_1123 SM00388 His Kinase A (phosphoacceptor) domain VV2_1124 SM00448 cheY-homologous receiver domain VV2_1127 SM00052 Putative diguanylate phosphodiesterase VV2_1127 SM00267 diguanylate cyclase VV2_1128 SM00382 ATPases associated with a variety of cellular activities VV2_1135 SM00883 Chaperonin 10 Kd subunit VV2_1136 SM01266 VV2_1136 VV2_1137 SM00028 Tetratricopeptide repeats VV2_1144 SM00052 Putative diguanylate phosphodiesterase VV2_1145 SM00855 Phosphoglycerate mutase family VV2_1154 SM00220 Serine/Threonine protein kinases, catalytic domain VV2_1158 SM00331 Sigma factor PP2C-like phosphatases VV2_1158 SM00448 cheY-homologous receiver domain VV2_1160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1161 SM00448 cheY-homologous receiver domain VV2_1163 SM00138 Methyltransferase, chemotaxis proteins VV2_1165 SM00091 PAS domain VV2_1165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1166 SM00260 Two component signalling adaptor domain VV2_1167 SM00260 Two component signalling adaptor domain VV2_1168 SM00073 Histidine Phosphotransfer domain VV2_1168 SM00260 Two component signalling adaptor domain VV2_1168 SM00387 Histidine kinase-like ATPases VV2_1168 SM01231 VV2_1168 VV2_1169 SM00448 cheY-homologous receiver domain VV2_1172 SM00470 ParB-like nuclease domain VV2_1177 SM00382 ATPases associated with a variety of cellular activities VV2_1178 SM00382 ATPases associated with a variety of cellular activities VV2_1182 SM00387 Histidine kinase-like ATPases VV2_1182 SM00388 His Kinase A (phosphoacceptor) domain VV2_1182 SM00448 cheY-homologous receiver domain VV2_1188 SM00382 ATPases associated with a variety of cellular activities VV2_1192 SM00387 Histidine kinase-like ATPases VV2_1193 SM00448 cheY-homologous receiver domain VV2_1193 SM00850 LytTr DNA-binding domain VV2_1195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1195 SM01049 VV2_1195 VV2_1203 SM01154 VV2_1203 VV2_1208 SM00342 helix_turn_helix, arabinose operon control protein VV2_1208 SM01009 AlkA N-terminal domain VV2_1217 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VV2_1217 SM00495 Chitin-binding domain type 3 VV2_1217 SM00636 VV2_1217 VV2_1222 SM00267 diguanylate cyclase VV2_1225 SM00267 diguanylate cyclase VV2_1226 SM00642 Alpha-amylase domain VV2_1231 SM00642 Alpha-amylase domain VV2_1232 SM00671 Sel1-like repeats. VV2_1247 SM00421 helix_turn_helix, Lux Regulon VV2_1252 SM00642 Alpha-amylase domain VV2_1253 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1253 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1253 SM01358 VV2_1253 VV2_1254 SM00729 Elongator protein 3, MiaB family, Radical SAM VV2_1256 SM00344 helix_turn_helix ASNC type VV2_1258 SM00495 Chitin-binding domain type 3 VV2_1262 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1262 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1264 SM00052 Putative diguanylate phosphodiesterase VV2_1268 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_1277 SM00387 Histidine kinase-like ATPases VV2_1277 SM00388 His Kinase A (phosphoacceptor) domain VV2_1278 SM00448 cheY-homologous receiver domain VV2_1278 SM00862 Transcriptional regulatory protein, C terminal VV2_1279 SM00267 diguanylate cyclase VV2_1282 SM00354 helix_turn _helix lactose operon repressor VV2_1288 SM00382 ATPases associated with a variety of cellular activities VV2_1289 SM00354 helix_turn _helix lactose operon repressor VV2_1294 SM00382 ATPases associated with a variety of cellular activities VV2_1295 SM00382 ATPases associated with a variety of cellular activities VV2_1297 SM00354 helix_turn _helix lactose operon repressor VV2_1302 SM00342 helix_turn_helix, arabinose operon control protein VV2_1304 SM01217 VV2_1304 VV2_1314 SM00974 VV2_1314 VV2_1319 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV2_1319 SM00267 diguanylate cyclase VV2_1323 SM00354 helix_turn _helix lactose operon repressor VV2_1325 SM00382 ATPases associated with a variety of cellular activities VV2_1327 SM01038 Beta galactosidase small chain VV2_1338 SM00342 helix_turn_helix, arabinose operon control protein VV2_1338 SM00871 Bacterial transcription activator, effector binding domain VV2_1342 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV2_1342 SM00382 ATPases associated with a variety of cellular activities VV2_1343 SM00849 Metallo-beta-lactamase superfamily VV2_1347 SM00421 helix_turn_helix, Lux Regulon VV2_1350 SM00342 helix_turn_helix, arabinose operon control protein VV2_1354 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV2_1360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VV2_1374 SM00357 Cold shock protein domain VV2_1392 SM00849 Metallo-beta-lactamase superfamily VV2_1396 SM00421 helix_turn_helix, Lux Regulon VV2_1401 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV2_1403 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VV2_1403 SM00267 diguanylate cyclase VV2_1405 SM00062 Bacterial periplasmic substrate-binding proteins VV2_1408 SM00642 Alpha-amylase domain VV2_1413 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1413 SM00387 Histidine kinase-like ATPases VV2_1413 SM00388 His Kinase A (phosphoacceptor) domain VV2_1414 SM00448 cheY-homologous receiver domain VV2_1414 SM00862 Transcriptional regulatory protein, C terminal VV2_1432 SM00014 Acid phosphatase homologues VV2_1452 SM00342 helix_turn_helix, arabinose operon control protein VV2_1462 SM00267 diguanylate cyclase VV2_1467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VV2_1469 SM00481 DNA polymerase alpha chain like domain VV2_1472 SM00248 ankyrin repeats VV2_1473 SM01060 VV2_1473 VV2_1485 SM00829 Enoylreductase VV2_1502 SM00849 Metallo-beta-lactamase superfamily VV2_1508 SM00421 helix_turn_helix, Lux Regulon VV2_1508 SM00448 cheY-homologous receiver domain VV2_1509 SM00267 diguanylate cyclase VV2_1510 SM00421 helix_turn_helix, Lux Regulon VV2_1511 SM00052 Putative diguanylate phosphodiesterase VV2_1511 SM00448 cheY-homologous receiver domain VV2_1512 SM00062 Bacterial periplasmic substrate-binding proteins VV2_1512 SM00387 Histidine kinase-like ATPases VV2_1512 SM00388 His Kinase A (phosphoacceptor) domain VV2_1512 SM00448 cheY-homologous receiver domain VV2_1515 SM00382 ATPases associated with a variety of cellular activities VV2_1520 SM01057 Eukaryotic-type carbonic anhydrase VV2_1523 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1523 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1529 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VV2_1529 SM00245 tail specific protease VV2_1533 SM00382 ATPases associated with a variety of cellular activities VV2_1537 SM00267 diguanylate cyclase VV2_1538 SM00028 Tetratricopeptide repeats VV2_1542 SM00422 helix_turn_helix, mercury resistance VV2_1544 SM00257 Lysin motif VV2_1546 SM00487 DEAD-like helicases superfamily VV2_1546 SM00490 helicase superfamily c-terminal domain VV2_1553 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1553 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1559 SM00382 ATPases associated with a variety of cellular activities VV2_1560 SM00267 diguanylate cyclase VV2_1562 SM00028 Tetratricopeptide repeats VV2_1562 SM00327 von Willebrand factor (vWF) type A domain VV2_1563 SM00327 von Willebrand factor (vWF) type A domain VV2_1567 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1567 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1569 SM00421 helix_turn_helix, Lux Regulon VV2_1570 SM00421 helix_turn_helix, Lux Regulon VV2_1572 SM00382 ATPases associated with a variety of cellular activities VV2_1584 SM00382 ATPases associated with a variety of cellular activities VV2_1592 SM00342 helix_turn_helix, arabinose operon control protein VV2_1595 SM00267 diguanylate cyclase VV2_1609 SM00382 ATPases associated with a variety of cellular activities VV2_1615 SM00729 Elongator protein 3, MiaB family, Radical SAM VV2_1619 SM00260 Two component signalling adaptor domain VV2_1619 SM00448 cheY-homologous receiver domain VV2_1622 SM00642 Alpha-amylase domain VV2_1623 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1623 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1624 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1624 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1644 SM00267 diguanylate cyclase VV2_1644 SM01079 VV2_1644 VV2_1645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VV2_1646 SM00530 Helix-turn-helix XRE-family like proteins VV2_1648 SM00267 diguanylate cyclase VV2_1651 SM01266 VV2_1651 VV2_1656 SM00342 helix_turn_helix, arabinose operon control protein VV2_1658 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VV2_1661 SM00342 helix_turn_helix, arabinose operon control protein VV2_1661 SM00871 Bacterial transcription activator, effector binding domain VV2_1669 SM00382 ATPases associated with a variety of cellular activities VV2_1671 SM00345 helix_turn_helix gluconate operon transcriptional repressor VV2_1671 SM00866 VV2_1671 VV2_1681 SM00936 Penicillin-binding protein 5, C-terminal domain VV2_1685 SM00028 Tetratricopeptide repeats