locus-tag class description BJD94_00005 PF02657 Fe-S metabolism associated domain BJD94_00025 PF02558 Ketopantoate reductase PanE/ApbA BJD94_00025 PF08546 Ketopantoate reductase PanE/ApbA C terminal BJD94_00030 PF03502 Nucleoside-specific channel-forming protein, Tsx BJD94_00040 PF04542 Sigma-70 region 2 BJD94_00040 PF04545 Sigma-70, region 4 BJD94_00050 PF07690 Major Facilitator Superfamily BJD94_00055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD94_00065 PF05175 Methyltransferase small domain BJD94_00070 PF01722 BolA-like protein BJD94_00075 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BJD94_00075 PF11973 NQRA C-terminal domain BJD94_00080 PF03116 NQR2, RnfD, RnfE family BJD94_00085 PF04205 FMN-binding domain BJD94_00090 PF02508 Rnf-Nqr subunit, membrane protein BJD94_00095 PF02508 Rnf-Nqr subunit, membrane protein BJD94_00100 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_00100 PF00970 Oxidoreductase FAD-binding domain BJD94_00100 PF00175 Oxidoreductase NAD-binding domain BJD94_00105 PF02424 ApbE family BJD94_00115 PF00072 Response regulator receiver domain BJD94_00115 PF00990 Diguanylate cyclase, GGDEF domain BJD94_00120 PF11799 impB/mucB/samB family C-terminal domain BJD94_00120 PF00817 impB/mucB/samB family BJD94_00125 PF09382 RQC domain BJD94_00125 PF16124 RecQ zinc-binding BJD94_00125 PF00570 HRDC domain BJD94_00125 PF00271 Helicase conserved C-terminal domain BJD94_00125 PF00270 DEAD/DEAH box helicase BJD94_00135 PF00041 Fibronectin type III domain BJD94_00135 PF00704 Glycosyl hydrolases family 18 BJD94_00140 PF00209 Sodium:neurotransmitter symporter family BJD94_00150 PF06786 Uncharacterised protein family (UPF0253) BJD94_00160 PF04073 Aminoacyl-tRNA editing domain BJD94_00160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD94_00160 PF03129 Anticodon binding domain BJD94_00165 PF01980 tRNA-methyltransferase O BJD94_00165 PF18389 TrmO C-terminal domain BJD94_00170 PF01197 Ribosomal protein L31 BJD94_00175 PF00444 Ribosomal protein L36 BJD94_00180 PF03806 AbgT putative transporter family BJD94_00185 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BJD94_00210 PF04287 tRNA pseudouridine synthase C BJD94_00215 PF00849 RNA pseudouridylate synthase BJD94_00220 PF11944 Protein of unknown function (DUF3461) BJD94_00225 PF08335 GlnD PII-uridylyltransferase BJD94_00225 PF01909 Nucleotidyltransferase domain BJD94_00225 PF01966 HD domain BJD94_00230 PF00557 Metallopeptidase family M24 BJD94_00235 PF00318 Ribosomal protein S2 BJD94_00240 PF00889 Elongation factor TS BJD94_00245 PF00696 Amino acid kinase family BJD94_00250 PF01765 Ribosome recycling factor BJD94_00255 PF01255 Putative undecaprenyl diphosphate synthase BJD94_00265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BJD94_00265 PF13288 DXP reductoisomerase C-terminal domain BJD94_00265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BJD94_00270 PF02163 Peptidase family M50 BJD94_00270 PF17820 PDZ domain BJD94_00275 PF07244 Surface antigen variable number repeat BJD94_00275 PF01103 Surface antigen BJD94_00280 PF03938 Outer membrane protein (OmpH-like) BJD94_00285 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_00285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BJD94_00290 PF07977 FabA-like domain BJD94_00295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BJD94_00295 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_00300 PF02684 Lipid-A-disaccharide synthetase BJD94_00305 PF01351 Ribonuclease HII BJD94_00310 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD94_00310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD94_00310 PF14579 Helix-hairpin-helix motif BJD94_00310 PF02811 PHP domain BJD94_00310 PF01336 OB-fold nucleic acid binding domain BJD94_00315 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BJD94_00320 PF11734 TilS substrate C-terminal domain BJD94_00320 PF09179 TilS substrate binding domain BJD94_00320 PF01171 PP-loop family BJD94_00325 PF00034 Cytochrome c BJD94_00330 PF00543 Nitrogen regulatory protein P-II BJD94_00335 PF03372 Endonuclease/Exonuclease/phosphatase family BJD94_00345 PF01476 LysM domain BJD94_00345 PF01464 Transglycosylase SLT domain BJD94_00350 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD94_00350 PF00753 Metallo-beta-lactamase superfamily BJD94_00355 PF08241 Methyltransferase domain BJD94_00360 PF00075 RNase H BJD94_00365 PF00929 Exonuclease BJD94_00375 PF02525 Flavodoxin-like fold BJD94_00380 PF02254 TrkA-N domain BJD94_00380 PF00999 Sodium/hydrogen exchanger family BJD94_00400 PF02770 Acyl-CoA dehydrogenase, middle domain BJD94_00400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD94_00400 PF09317 Domain of unknown function (DUF1974) BJD94_00400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD94_00405 PF13580 SIS domain BJD94_00410 PF13230 Glutamine amidotransferases class-II BJD94_00415 PF00551 Formyl transferase BJD94_00430 PF00860 Permease family BJD94_00445 PF03358 NADPH-dependent FMN reductase BJD94_00450 PF03960 ArsC family BJD94_00455 PF01435 Peptidase family M48 BJD94_00455 PF13181 Tetratricopeptide repeat BJD94_00465 PF01594 AI-2E family transporter BJD94_00470 PF00578 AhpC/TSA family BJD94_00475 PF01842 ACT domain BJD94_00480 PF00701 Dihydrodipicolinate synthetase family BJD94_00500 PF01546 Peptidase family M20/M25/M40 BJD94_00500 PF07687 Peptidase dimerisation domain BJD94_00505 PF03960 ArsC family BJD94_00530 PF04261 Dyp-type peroxidase family BJD94_00535 PF00669 Bacterial flagellin N-terminal helical region BJD94_00535 PF07196 Flagellin hook IN motif BJD94_00535 PF00700 Bacterial flagellin C-terminal helical region BJD94_00540 PF00700 Bacterial flagellin C-terminal helical region BJD94_00540 PF07196 Flagellin hook IN motif BJD94_00540 PF00669 Bacterial flagellin N-terminal helical region BJD94_00545 PF07196 Flagellin hook IN motif BJD94_00545 PF00700 Bacterial flagellin C-terminal helical region BJD94_00545 PF00669 Bacterial flagellin N-terminal helical region BJD94_00550 PF03646 FlaG protein BJD94_00555 PF07195 Flagellar hook-associated protein 2 C-terminus BJD94_00555 PF07196 Flagellin hook IN motif BJD94_00555 PF02465 Flagellar hook-associated protein 2 N-terminus BJD94_00565 PF02561 Flagellar protein FliS BJD94_00570 PF00072 Response regulator receiver domain BJD94_00570 PF00158 Sigma-54 interaction domain BJD94_00570 PF02954 Bacterial regulatory protein, Fis family BJD94_00575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_00575 PF00512 His Kinase A (phospho-acceptor) domain BJD94_00580 PF02954 Bacterial regulatory protein, Fis family BJD94_00580 PF00158 Sigma-54 interaction domain BJD94_00580 PF00072 Response regulator receiver domain BJD94_00585 PF02049 Flagellar hook-basal body complex protein FliE BJD94_00590 PF01514 Secretory protein of YscJ/FliF family BJD94_00590 PF08345 Flagellar M-ring protein C-terminal BJD94_00595 PF14841 FliG middle domain BJD94_00595 PF01706 FliG C-terminal domain BJD94_00595 PF14842 FliG N-terminal domain BJD94_00605 PF18269 T3SS EscN ATPase C-terminal domain BJD94_00605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD94_00630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD94_00635 PF04347 Flagellar biosynthesis protein, FliO BJD94_00640 PF00813 FliP family BJD94_00645 PF01313 Bacterial export proteins, family 3 BJD94_00650 PF01311 Bacterial export proteins, family 1 BJD94_00655 PF01312 FlhB HrpN YscU SpaS Family BJD94_00660 PF00771 FHIPEP family BJD94_00665 PF00448 SRP54-type protein, GTPase domain BJD94_00670 PF10609 NUBPL iron-transfer P-loop NTPase BJD94_00675 PF04542 Sigma-70 region 2 BJD94_00675 PF04539 Sigma-70 region 3 BJD94_00675 PF04545 Sigma-70, region 4 BJD94_00680 PF00072 Response regulator receiver domain BJD94_00685 PF04344 Chemotaxis phosphatase, CheZ BJD94_00690 PF01584 CheW-like domain BJD94_00690 PF02895 Signal transducing histidine kinase, homodimeric domain BJD94_00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_00690 PF01627 Hpt domain BJD94_00690 PF07194 P2 response regulator binding domain BJD94_00695 PF01339 CheB methylesterase BJD94_00695 PF00072 Response regulator receiver domain BJD94_00700 PF13614 AAA domain BJD94_00710 PF01584 CheW-like domain BJD94_00720 PF00005 ABC transporter BJD94_00725 PF03379 CcmB protein BJD94_00730 PF01578 Cytochrome C assembly protein BJD94_00735 PF04995 Heme exporter protein D (CcmD) BJD94_00740 PF03100 CcmE BJD94_00745 PF01578 Cytochrome C assembly protein BJD94_00745 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD94_00750 PF08534 Redoxin BJD94_00755 PF03918 Cytochrome C biogenesis protein BJD94_00760 PF03918 Cytochrome C biogenesis protein BJD94_00765 PF04333 MlaA lipoprotein BJD94_00770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD94_00775 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD94_00785 PF04542 Sigma-70 region 2 BJD94_00785 PF08281 Sigma-70, region 4 BJD94_00790 PF00108 Thiolase, N-terminal domain BJD94_00790 PF02803 Thiolase, C-terminal domain BJD94_00795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD94_00795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD94_00795 PF00378 Enoyl-CoA hydratase/isomerase BJD94_00800 PF00675 Insulinase (Peptidase family M16) BJD94_00800 PF05193 Peptidase M16 inactive domain BJD94_00805 PF00300 Histidine phosphatase superfamily (branch 1) BJD94_00810 PF01713 Smr domain BJD94_00815 PF05175 Methyltransferase small domain BJD94_00820 PF01264 Chorismate synthase BJD94_00825 PF03458 UPF0126 domain BJD94_00830 PF04315 Elongation factor P hydroxylase BJD94_00835 PF08891 YfcL protein BJD94_00840 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BJD94_00840 PF01266 FAD dependent oxidoreductase BJD94_00845 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD94_00845 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD94_00850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD94_00850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD94_00850 PF11890 Domain of unknown function (DUF3410) BJD94_00855 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD94_00855 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD94_00865 PF01416 tRNA pseudouridine synthase BJD94_00870 PF17848 Acetyl-coA carboxylase zinc finger domain BJD94_00870 PF01039 Carboxyl transferase domain BJD94_00875 PF02875 Mur ligase family, glutamate ligase domain BJD94_00875 PF08245 Mur ligase middle domain BJD94_00880 PF05036 Sporulation related domain BJD94_00885 PF02674 Colicin V production protein BJD94_00890 PF00156 Phosphoribosyl transferase domain BJD94_00895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_00895 PF03466 LysR substrate binding domain BJD94_00900 PF00072 Response regulator receiver domain BJD94_00905 PF00156 Phosphoribosyl transferase domain BJD94_00910 PF12169 DNA polymerase III subunits gamma and tau domain III BJD94_00910 PF12170 DNA polymerase III tau subunit V interacting with alpha BJD94_00910 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BJD94_00915 PF02575 YbaB/EbfC DNA-binding family BJD94_00920 PF13662 Toprim domain BJD94_00920 PF02132 RecR protein BJD94_00935 PF00512 His Kinase A (phospho-acceptor) domain BJD94_00935 PF00672 HAMP domain BJD94_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_00940 PF00072 Response regulator receiver domain BJD94_00940 PF00486 Transcriptional regulatory protein, C terminal BJD94_00945 PF00230 Major intrinsic protein BJD94_00950 PF03692 Putative zinc- or iron-chelating domain BJD94_00955 PF03692 Putative zinc- or iron-chelating domain BJD94_00965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_00975 PF00245 Alkaline phosphatase BJD94_00990 PF13847 Methyltransferase domain BJD94_00995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BJD94_00995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BJD94_01010 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01020 PF02743 Cache domain BJD94_01020 PF00672 HAMP domain BJD94_01020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01025 PF18500 CadC C-terminal domain 1 BJD94_01025 PF00486 Transcriptional regulatory protein, C terminal BJD94_01030 PF13520 Amino acid permease BJD94_01035 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BJD94_01035 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BJD94_01035 PF01276 Orn/Lys/Arg decarboxylase, major domain BJD94_01040 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01045 PF00392 Bacterial regulatory proteins, gntR family BJD94_01045 PF03061 Thioesterase superfamily BJD94_01045 PF00571 CBS domain BJD94_01045 PF07085 DRTGG domain BJD94_01050 PF00403 Heavy-metal-associated domain BJD94_01055 PF01048 Phosphorylase superfamily BJD94_01065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01065 PF00672 HAMP domain BJD94_01070 PF01230 HIT domain BJD94_01085 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BJD94_01085 PF13036 Peptidoglycan-synthase activator LpoB BJD94_01095 PF05728 Uncharacterised protein family (UPF0227) BJD94_01100 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_01115 PF02559 CarD-like/TRCF domain BJD94_01115 PF00270 DEAD/DEAH box helicase BJD94_01115 PF00271 Helicase conserved C-terminal domain BJD94_01115 PF03461 TRCF domain BJD94_01115 PF17757 UvrB interaction domain BJD94_01125 PF12704 MacB-like periplasmic core domain BJD94_01125 PF02687 FtsX-like permease family BJD94_01130 PF00005 ABC transporter BJD94_01135 PF12704 MacB-like periplasmic core domain BJD94_01135 PF02687 FtsX-like permease family BJD94_01145 PF00753 Metallo-beta-lactamase superfamily BJD94_01145 PF03772 Competence protein BJD94_01145 PF13567 Domain of unknown function (DUF4131) BJD94_01150 PF00664 ABC transporter transmembrane region BJD94_01150 PF00005 ABC transporter BJD94_01155 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BJD94_01160 PF03966 Trm112p-like protein BJD94_01165 PF02348 Cytidylyltransferase BJD94_01170 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01170 PF17155 Gammaproteobacterial periplasmic sensor domain BJD94_01175 PF04293 SpoVR like protein BJD94_01180 PF04285 Protein of unknown function (DUF444) BJD94_01185 PF08298 PrkA AAA domain BJD94_01185 PF06798 PrkA serine protein kinase C-terminal domain BJD94_01190 PF03887 YfbU domain BJD94_01200 PF04055 Radical SAM superfamily BJD94_01205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01205 PF00672 HAMP domain BJD94_01215 PF01228 Glycine radical BJD94_01215 PF02901 Pyruvate formate lyase-like BJD94_01230 PF00005 ABC transporter BJD94_01235 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_01240 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_01245 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_01255 PF03372 Endonuclease/Exonuclease/phosphatase family BJD94_01260 PF00672 HAMP domain BJD94_01260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01260 PF02743 Cache domain BJD94_01265 PF10689 Protein of unknown function (DUF2496) BJD94_01270 PF07445 Primosomal replication protein priC BJD94_01275 PF01925 Sulfite exporter TauE/SafE BJD94_01280 PF06733 DEAD_2 BJD94_01280 PF13307 Helicase C-terminal domain BJD94_01290 PF00849 RNA pseudouridylate synthase BJD94_01295 PF03971 Monomeric isocitrate dehydrogenase BJD94_01300 PF00313 'Cold-shock' DNA-binding domain BJD94_01305 PF02617 ATP-dependent Clp protease adaptor protein ClpS BJD94_01310 PF17871 AAA lid domain BJD94_01310 PF10431 C-terminal, D2-small domain, of ClpB protein BJD94_01310 PF02861 Clp amino terminal domain, pathogenicity island component BJD94_01310 PF07724 AAA domain (Cdc48 subfamily) BJD94_01310 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_01315 PF01176 Translation initiation factor 1A / IF-1 BJD94_01320 PF04377 Arginine-tRNA-protein transferase, C terminus BJD94_01320 PF04376 Arginine-tRNA-protein transferase, N terminus BJD94_01325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BJD94_01335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD94_01340 PF10692 Protein of unknown function (DUF2498) BJD94_01345 PF01751 Toprim domain BJD94_01345 PF01131 DNA topoisomerase BJD94_01345 PF01396 Topoisomerase DNA binding C4 zinc finger BJD94_01345 PF08272 Topoisomerase I zinc-ribbon-like BJD94_01350 PF00483 Nucleotidyl transferase BJD94_01355 PF00534 Glycosyl transferases group 1 BJD94_01355 PF08323 Starch synthase catalytic domain BJD94_01360 PF00561 alpha/beta hydrolase fold BJD94_01375 PF04994 TfoX C-terminal domain BJD94_01375 PF04993 TfoX N-terminal domain BJD94_01380 PF00356 Bacterial regulatory proteins, lacI family BJD94_01385 PF02613 Nitrate reductase delta subunit BJD94_01390 PF00486 Transcriptional regulatory protein, C terminal BJD94_01390 PF00072 Response regulator receiver domain BJD94_01395 PF02698 DUF218 domain BJD94_01405 PF17192 MukF middle domain BJD94_01405 PF17193 MukF C-terminal domain BJD94_01405 PF03882 MukF winged-helix domain BJD94_01410 PF04288 MukE-like family BJD94_01415 PF04310 MukB N-terminal BJD94_01415 PF16330 MukB hinge domain BJD94_01420 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BJD94_01420 PF12833 Helix-turn-helix domain BJD94_01425 PF00171 Aldehyde dehydrogenase family BJD94_01430 PF00732 GMC oxidoreductase BJD94_01430 PF05199 GMC oxidoreductase BJD94_01445 PF18030 RimK PreATP-grasp domain BJD94_01445 PF08443 RimK-like ATP-grasp domain BJD94_01450 PF08003 Protein of unknown function (DUF1698) BJD94_01455 PF13649 Methyltransferase domain BJD94_01465 PF01336 OB-fold nucleic acid binding domain BJD94_01465 PF00152 tRNA synthetases class II (D, K and N) BJD94_01465 PF02938 GAD domain BJD94_01470 PF02075 Crossover junction endodeoxyribonuclease RuvC BJD94_01475 PF01330 RuvA N terminal domain BJD94_01475 PF07499 RuvA, C-terminal domain BJD94_01480 PF17864 RuvB AAA lid domain BJD94_01480 PF05491 RuvB C-terminal winged helix domain BJD94_01480 PF05496 Holliday junction DNA helicase RuvB P-loop domain BJD94_01485 PF01654 Cytochrome bd terminal oxidase subunit I BJD94_01490 PF02322 Cytochrome bd terminal oxidase subunit II BJD94_01495 PF08173 Membrane bound YbgT-like protein BJD94_01505 PF03061 Thioesterase superfamily BJD94_01510 PF01618 MotA/TolQ/ExbB proton channel family BJD94_01515 PF02472 Biopolymer transport protein ExbD/TolR BJD94_01525 PF04052 TolB amino-terminal domain BJD94_01525 PF07676 WD40-like Beta Propeller Repeat BJD94_01530 PF00691 OmpA family BJD94_01535 PF13174 Tetratricopeptide repeat BJD94_01535 PF16331 TolA binding protein trimerisation BJD94_01540 PF02445 Quinolinate synthetase A protein BJD94_01550 PF03994 Domain of Unknown Function (DUF350) BJD94_01560 PF03738 Glutathionylspermidine synthase preATP-grasp BJD94_01570 PF00072 Response regulator receiver domain BJD94_01570 PF09308 LuxQ, periplasmic BJD94_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_01570 PF00512 His Kinase A (phospho-acceptor) domain BJD94_01575 PF06610 L-alanine exporter BJD94_01640 PF02384 N-6 DNA Methylase BJD94_01645 PF06250 YhcG PDDEXK nuclease domain BJD94_01645 PF17761 DUF1016 N-terminal domain BJD94_01650 PF01420 Type I restriction modification DNA specificity domain BJD94_01660 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BJD94_01660 PF11867 Domain of unknown function (DUF3387) BJD94_01660 PF18766 SWI2/SNF2 ATPase BJD94_01675 PF04229 GrpB protein BJD94_01690 PF13419 Haloacid dehalogenase-like hydrolase BJD94_01695 PF02743 Cache domain BJD94_01695 PF00672 HAMP domain BJD94_01695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD94_01700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD94_01705 PF03741 Integral membrane protein TerC family BJD94_01720 PF02311 AraC-like ligand binding domain BJD94_01720 PF12833 Helix-turn-helix domain BJD94_01725 PF01740 STAS domain BJD94_01725 PF00916 Sulfate permease family BJD94_01735 PF03707 Bacterial signalling protein N terminal repeat BJD94_01735 PF00563 EAL domain BJD94_01735 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01740 PF08497 Radical SAM N-terminal BJD94_01740 PF11842 Domain of unknown function (DUF3362) BJD94_01740 PF04055 Radical SAM superfamily BJD94_01745 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01745 PF03707 Bacterial signalling protein N terminal repeat BJD94_01745 PF00563 EAL domain BJD94_01750 PF03707 Bacterial signalling protein N terminal repeat BJD94_01750 PF00563 EAL domain BJD94_01750 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_01765 PF03466 LysR substrate binding domain BJD94_01770 PF08267 Cobalamin-independent synthase, N-terminal domain BJD94_01770 PF01717 Cobalamin-independent synthase, Catalytic domain BJD94_01775 PF07085 DRTGG domain BJD94_01775 PF01515 Phosphate acetyl/butaryl transferase BJD94_01780 PF00871 Acetokinase family BJD94_01785 PF04217 Protein of unknown function, DUF412 BJD94_01795 PF02653 Branched-chain amino acid transport system / permease component BJD94_01800 PF00005 ABC transporter BJD94_01805 PF02903 Alpha amylase, N-terminal ig-like domain BJD94_01805 PF00128 Alpha amylase, catalytic domain BJD94_01810 PF00990 Diguanylate cyclase, GGDEF domain BJD94_01810 PF00072 Response regulator receiver domain BJD94_01815 PF01207 Dihydrouridine synthase (Dus) BJD94_01820 PF07517 SecA DEAD-like domain BJD94_01820 PF01043 SecA preprotein cross-linking domain BJD94_01820 PF07516 SecA Wing and Scaffold domain BJD94_01820 PF02810 SEC-C motif BJD94_01825 PF02600 Disulfide bond formation protein DsbB BJD94_01830 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BJD94_01835 PF00392 Bacterial regulatory proteins, gntR family BJD94_01835 PF07840 FadR C-terminal domain BJD94_01840 PF00925 GTP cyclohydrolase II BJD94_01865 PF03734 L,D-transpeptidase catalytic domain BJD94_01865 PF01471 Putative peptidoglycan binding domain BJD94_01870 PF05951 Bacterial protein of unknown function (DUF882) BJD94_01875 PF00753 Metallo-beta-lactamase superfamily BJD94_01890 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD94_01900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BJD94_01905 PF17200 Single Cache domain 2 BJD94_01905 PF07730 Histidine kinase BJD94_01910 PF00196 Bacterial regulatory proteins, luxR family BJD94_01910 PF00072 Response regulator receiver domain BJD94_01915 PF01047 MarR family BJD94_01920 PF02028 BCCT, betaine/carnitine/choline family transporter BJD94_01925 PF02743 Cache domain BJD94_01925 PF00672 HAMP domain BJD94_01925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01945 PF00155 Aminotransferase class I and II BJD94_01950 PF00672 HAMP domain BJD94_01950 PF01966 HD domain BJD94_01965 PF00152 tRNA synthetases class II (D, K and N) BJD94_01965 PF01336 OB-fold nucleic acid binding domain BJD94_01970 PF00672 HAMP domain BJD94_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_01970 PF17200 Single Cache domain 2 BJD94_01975 PF01242 6-pyruvoyl tetrahydropterin synthase BJD94_01985 PF00563 EAL domain BJD94_01985 PF04940 Sensors of blue-light using FAD BJD94_01990 PF03315 Serine dehydratase beta chain BJD94_01990 PF03313 Serine dehydratase alpha chain BJD94_01995 PF03222 Tryptophan/tyrosine permease family BJD94_02000 PF00293 NUDIX domain BJD94_02010 PF00072 Response regulator receiver domain BJD94_02010 PF09308 LuxQ, periplasmic BJD94_02010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_02010 PF00512 His Kinase A (phospho-acceptor) domain BJD94_02015 PF00425 chorismate binding enzyme BJD94_02015 PF04715 Anthranilate synthase component I, N terminal region BJD94_02030 PF04317 YcjX-like family, DUF463 BJD94_02035 PF05128 Domain of unknown function (DUF697) BJD94_02040 PF13188 PAS domain BJD94_02040 PF00158 Sigma-54 interaction domain BJD94_02040 PF18024 Helix-turn-helix domain BJD94_02045 PF13302 Acetyltransferase (GNAT) domain BJD94_02060 PF00939 Sodium:sulfate symporter transmembrane region BJD94_02065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_02065 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_02065 PF00512 His Kinase A (phospho-acceptor) domain BJD94_02080 PF00563 EAL domain BJD94_02080 PF05231 MASE1 BJD94_02090 PF11871 Domain of unknown function (DUF3391) BJD94_02090 PF01966 HD domain BJD94_02095 PF00563 EAL domain BJD94_02095 PF13188 PAS domain BJD94_02095 PF00990 Diguanylate cyclase, GGDEF domain BJD94_02095 PF03707 Bacterial signalling protein N terminal repeat BJD94_02100 PF11230 Protein of unknown function (DUF3029) BJD94_02105 PF04055 Radical SAM superfamily BJD94_02110 PF03466 LysR substrate binding domain BJD94_02110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_02125 PF01966 HD domain BJD94_02130 PF01734 Patatin-like phospholipase BJD94_02140 PF00781 Diacylglycerol kinase catalytic domain BJD94_02145 PF03222 Tryptophan/tyrosine permease family BJD94_02150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_02155 PF00072 Response regulator receiver domain BJD94_02160 PF00210 Ferritin-like domain BJD94_02175 PF00005 ABC transporter BJD94_02175 PF00664 ABC transporter transmembrane region BJD94_02180 PF00005 ABC transporter BJD94_02180 PF00664 ABC transporter transmembrane region BJD94_02185 PF01235 Sodium:alanine symporter family BJD94_02190 PF02397 Bacterial sugar transferase BJD94_02200 PF10531 SLBB domain BJD94_02200 PF02563 Polysaccharide biosynthesis/export protein BJD94_02200 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BJD94_02225 PF00534 Glycosyl transferases group 1 BJD94_02225 PF13439 Glycosyltransferase Family 4 BJD94_02230 PF00534 Glycosyl transferases group 1 BJD94_02230 PF13439 Glycosyltransferase Family 4 BJD94_02240 PF08532 Beta-galactosidase trimerisation domain BJD94_02240 PF08533 Beta-galactosidase C-terminal domain BJD94_02240 PF02449 Beta-galactosidase BJD94_02255 PF00563 EAL domain BJD94_02255 PF03707 Bacterial signalling protein N terminal repeat BJD94_02255 PF00990 Diguanylate cyclase, GGDEF domain BJD94_02270 PF00012 Hsp70 protein BJD94_02275 PF00012 Hsp70 protein BJD94_02285 PF00990 Diguanylate cyclase, GGDEF domain BJD94_02305 PF06629 MltA-interacting protein MipA BJD94_02335 PF13629 Pilus formation protein N terminal region BJD94_02335 PF00263 Bacterial type II and III secretion system protein BJD94_02335 PF04972 BON domain BJD94_02345 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD94_02350 PF00437 Type II/IV secretion system protein BJD94_02385 PF02525 Flavodoxin-like fold BJD94_02395 PF11898 Domain of unknown function (DUF3418) BJD94_02395 PF00270 DEAD/DEAH box helicase BJD94_02395 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BJD94_02395 PF00271 Helicase conserved C-terminal domain BJD94_02395 PF04408 Helicase associated domain (HA2) BJD94_02420 PF00561 alpha/beta hydrolase fold BJD94_02425 PF03280 Proteobacterial lipase chaperone protein BJD94_02430 PF07690 Major Facilitator Superfamily BJD94_02435 PF00491 Arginase family BJD94_02440 PF17810 Arginine decarboxylase helical bundle domain BJD94_02440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD94_02440 PF17944 Arginine decarboxylase C-terminal helical extension BJD94_02500 PF00072 Response regulator receiver domain BJD94_02500 PF00990 Diguanylate cyclase, GGDEF domain BJD94_02505 PF01409 tRNA synthetases class II core domain (F) BJD94_02505 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BJD94_02510 PF03484 tRNA synthetase B5 domain BJD94_02510 PF03483 B3/4 domain BJD94_02510 PF03147 Ferredoxin-fold anticodon binding domain BJD94_02510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BJD94_02510 PF01588 Putative tRNA binding domain BJD94_02515 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BJD94_02515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BJD94_02530 PF00216 Bacterial DNA-binding protein BJD94_02540 PF05724 Thiopurine S-methyltransferase (TPMT) BJD94_02545 PF02222 ATP-grasp domain BJD94_02550 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BJD94_02550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD94_02565 PF00691 OmpA family BJD94_02565 PF13488 Glycine zipper BJD94_02580 PF13183 4Fe-4S dicluster domain BJD94_02580 PF01565 FAD binding domain BJD94_02580 PF02913 FAD linked oxidases, C-terminal domain BJD94_02590 PF00089 Trypsin BJD94_02600 PF00221 Aromatic amino acid lyase BJD94_02605 PF01175 Urocanase Rossmann-like domain BJD94_02605 PF17392 Urocanase C-terminal domain BJD94_02605 PF17391 Urocanase N-terminal domain BJD94_02610 PF00491 Arginase family BJD94_02615 PF01979 Amidohydrolase family BJD94_02620 PF07702 UTRA domain BJD94_02620 PF00392 Bacterial regulatory proteins, gntR family BJD94_02625 PF07070 SpoOM protein BJD94_02635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD94_02635 PF03129 Anticodon binding domain BJD94_02635 PF02824 TGS domain BJD94_02635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD94_02640 PF00707 Translation initiation factor IF-3, C-terminal domain BJD94_02640 PF05198 Translation initiation factor IF-3, N-terminal domain BJD94_02645 PF01632 Ribosomal protein L35 BJD94_02650 PF00453 Ribosomal protein L20 BJD94_02655 PF00589 Phage integrase family BJD94_02655 PF13495 Phage integrase, N-terminal SAM-like domain BJD94_02720 PF09905 DNA-binding protein VF530 BJD94_02795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_02825 PF08378 Nuclease-related domain BJD94_02905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_03005 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system BJD94_03010 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BJD94_03035 PF04229 GrpB protein BJD94_03035 PF13673 Acetyltransferase (GNAT) domain BJD94_03075 PF02567 Phenazine biosynthesis-like protein BJD94_03115 PF13302 Acetyltransferase (GNAT) domain BJD94_03170 PF13274 Protein of unknown function (DUF4065) BJD94_03220 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BJD94_03225 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BJD94_03265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_03335 PF09905 DNA-binding protein VF530 BJD94_03370 PF07859 alpha/beta hydrolase fold BJD94_03435 PF09905 DNA-binding protein VF530 BJD94_03485 PF13302 Acetyltransferase (GNAT) domain BJD94_03520 PF01906 Putative heavy-metal-binding BJD94_03595 PF13649 Methyltransferase domain BJD94_03610 PF01906 Putative heavy-metal-binding BJD94_03685 PF00665 Integrase core domain BJD94_03690 PF01527 Transposase BJD94_03710 PF08378 Nuclease-related domain BJD94_03715 PF13737 Transposase DDE domain BJD94_03745 PF01554 MatE BJD94_03750 PF00677 Lumazine binding domain BJD94_03765 PF01339 CheB methylesterase BJD94_03765 PF00072 Response regulator receiver domain BJD94_03770 PF00990 Diguanylate cyclase, GGDEF domain BJD94_03770 PF05230 MASE2 domain BJD94_03780 PF00877 NlpC/P60 family BJD94_03785 PF00672 HAMP domain BJD94_03785 PF02743 Cache domain BJD94_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_03800 PF00480 ROK family BJD94_03810 PF03454 MoeA C-terminal region (domain IV) BJD94_03810 PF00994 Probable molybdopterin binding domain BJD94_03810 PF03453 MoeA N-terminal region (domain I and II) BJD94_03815 PF12804 MobA-like NTP transferase domain BJD94_03820 PF00005 ABC transporter BJD94_03820 PF08402 TOBE domain BJD94_03825 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_03830 PF12849 PBP superfamily domain BJD94_03835 PF00072 Response regulator receiver domain BJD94_03835 PF00158 Sigma-54 interaction domain BJD94_03835 PF02954 Bacterial regulatory protein, Fis family BJD94_03840 PF00512 His Kinase A (phospho-acceptor) domain BJD94_03840 PF00989 PAS fold BJD94_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_03855 PF12848 ABC transporter BJD94_03855 PF00005 ABC transporter BJD94_03860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_03860 PF00672 HAMP domain BJD94_03895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD94_03895 PF00384 Molybdopterin oxidoreductase BJD94_03895 PF01568 Molydopterin dinucleotide binding domain BJD94_03900 PF13247 4Fe-4S dicluster domain BJD94_03930 PF00909 Ammonium Transporter Family BJD94_03935 PF02146 Sir2 family BJD94_03940 PF13416 Bacterial extracellular solute-binding protein BJD94_03945 PF13416 Bacterial extracellular solute-binding protein BJD94_03950 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_03955 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_03960 PF00005 ABC transporter BJD94_03960 PF08402 TOBE domain BJD94_03970 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD94_03980 PF01171 PP-loop family BJD94_03985 PF00582 Universal stress protein family BJD94_03990 PF00027 Cyclic nucleotide-binding domain BJD94_03990 PF13545 Crp-like helix-turn-helix domain BJD94_04005 PF00403 Heavy-metal-associated domain BJD94_04015 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BJD94_04015 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BJD94_04030 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD94_04045 PF00072 Response regulator receiver domain BJD94_04045 PF09308 LuxQ, periplasmic BJD94_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_04045 PF00512 His Kinase A (phospho-acceptor) domain BJD94_04065 PF17414 MatP C-terminal ribbon-helix-helix domain BJD94_04065 PF06303 MatP N-terminal domain BJD94_04070 PF13654 AAA domain BJD94_04070 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD94_04075 PF07977 FabA-like domain BJD94_04080 PF04957 Ribosome modulation factor BJD94_04090 PF16326 ABC transporter C-terminal domain BJD94_04090 PF12848 ABC transporter BJD94_04090 PF00005 ABC transporter BJD94_04100 PF10672 S-adenosylmethionine-dependent methyltransferase BJD94_04100 PF02926 THUMP domain BJD94_04100 PF01170 Putative RNA methylase family UPF0020 BJD94_04105 PF07126 Cell-division protein ZapC BJD94_04110 PF01180 Dihydroorotate dehydrogenase BJD94_04115 PF05088 Bacterial NAD-glutamate dehydrogenase BJD94_04120 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BJD94_04120 PF01433 Peptidase family M1 domain BJD94_04120 PF11940 Domain of unknown function (DUF3458) Ig-like fold BJD94_04130 PF11818 C-terminal domain of tail specific protease (DUF3340) BJD94_04130 PF03572 Peptidase family S41 BJD94_04130 PF17804 Tail specific protease N-terminal domain BJD94_04130 PF00595 PDZ domain BJD94_04135 PF17516 ProQ C-terminal domain BJD94_04135 PF04352 ProQ/FINO family BJD94_04140 PF13185 GAF domain BJD94_04145 PF00005 ABC transporter BJD94_04145 PF00664 ABC transporter transmembrane region BJD94_04150 PF04403 Paraquat-inducible protein A BJD94_04155 PF02470 MlaD protein BJD94_04160 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BJD94_04160 PF01189 16S rRNA methyltransferase RsmB/F BJD94_04160 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BJD94_04165 PF17783 CvfB-like winged helix domain BJD94_04165 PF13509 S1 domain BJD94_04180 PF00793 DAHP synthetase I family BJD94_04185 PF04461 Protein of unknown function (DUF520) BJD94_04190 PF17158 Membrane-associated sensor, integral membrane domain BJD94_04190 PF00990 Diguanylate cyclase, GGDEF domain BJD94_04195 PF01068 ATP dependent DNA ligase domain BJD94_04195 PF14743 DNA ligase OB-like domain BJD94_04200 PF01740 STAS domain BJD94_04210 PF02563 Polysaccharide biosynthesis/export protein BJD94_04210 PF10531 SLBB domain BJD94_04225 PF00512 His Kinase A (phospho-acceptor) domain BJD94_04225 PF00072 Response regulator receiver domain BJD94_04225 PF01627 Hpt domain BJD94_04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_04225 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD94_04225 PF00672 HAMP domain BJD94_04230 PF00072 Response regulator receiver domain BJD94_04230 PF00158 Sigma-54 interaction domain BJD94_04230 PF02954 Bacterial regulatory protein, Fis family BJD94_04275 PF00534 Glycosyl transferases group 1 BJD94_04275 PF13439 Glycosyltransferase Family 4 BJD94_04285 PF02397 Bacterial sugar transferase BJD94_04315 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BJD94_04315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD94_04320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD94_04325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD94_04325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD94_04330 PF00072 Response regulator receiver domain BJD94_04330 PF12431 Transcriptional regulator BJD94_04335 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BJD94_04335 PF17203 Single cache domain 3 BJD94_04335 PF00989 PAS fold BJD94_04335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_04350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_04375 PF01235 Sodium:alanine symporter family BJD94_04385 PF01810 LysE type translocator BJD94_04390 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BJD94_04395 PF01553 Acyltransferase BJD94_04400 PF12801 4Fe-4S binding domain BJD94_04400 PF13237 4Fe-4S dicluster domain BJD94_04405 PF12838 4Fe-4S dicluster domain BJD94_04405 PF12800 4Fe-4S binding domain BJD94_04410 PF14824 Sirohaem biosynthesis protein central BJD94_04410 PF10414 Sirohaem synthase dimerisation region BJD94_04410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD94_04415 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_04420 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_04425 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_04430 PF00005 ABC transporter BJD94_04435 PF01027 Inhibitor of apoptosis-promoting Bax1 BJD94_04445 PF04358 DsrC like protein BJD94_04450 PF00708 Acylphosphatase BJD94_04455 PF00672 HAMP domain BJD94_04455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_04455 PF02743 Cache domain BJD94_04460 PF10672 S-adenosylmethionine-dependent methyltransferase BJD94_04460 PF17785 PUA-like domain BJD94_04485 PF00990 Diguanylate cyclase, GGDEF domain BJD94_04485 PF17151 Periplasmic sensor domain BJD94_04490 PF06508 Queuosine biosynthesis protein QueC BJD94_04495 PF04055 Radical SAM superfamily BJD94_04505 PF02743 Cache domain BJD94_04505 PF00672 HAMP domain BJD94_04505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_04515 PF00089 Trypsin BJD94_04525 PF13193 AMP-binding enzyme C-terminal domain BJD94_04525 PF00501 AMP-binding enzyme BJD94_04525 PF16177 Acetyl-coenzyme A synthetase N-terminus BJD94_04530 PF04303 PrpF protein BJD94_04535 PF00330 Aconitase family (aconitate hydratase) BJD94_04535 PF00694 Aconitase C-terminal domain BJD94_04540 PF00285 Citrate synthase, C-terminal domain BJD94_04565 PF01970 Tripartite tricarboxylate transporter TctA family BJD94_04590 PF00196 Bacterial regulatory proteins, luxR family BJD94_04590 PF00072 Response regulator receiver domain BJD94_04595 PF01925 Sulfite exporter TauE/SafE BJD94_04600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_04600 PF02743 Cache domain BJD94_04600 PF00672 HAMP domain BJD94_04605 PF13416 Bacterial extracellular solute-binding protein BJD94_04610 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_04615 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_04620 PF17912 MalK OB fold domain BJD94_04620 PF00005 ABC transporter BJD94_04625 PF08220 DeoR-like helix-turn-helix domain BJD94_04625 PF00455 DeoR C terminal sensor domain BJD94_04630 PF03009 Glycerophosphoryl diester phosphodiesterase family BJD94_04635 PF00141 Peroxidase BJD94_04645 PF00313 'Cold-shock' DNA-binding domain BJD94_04650 PF00990 Diguanylate cyclase, GGDEF domain BJD94_04650 PF17151 Periplasmic sensor domain BJD94_04685 PF02798 Glutathione S-transferase, N-terminal domain BJD94_04685 PF14497 Glutathione S-transferase, C-terminal domain BJD94_04695 PF04209 homogentisate 1,2-dioxygenase BJD94_04700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_04705 PF01546 Peptidase family M20/M25/M40 BJD94_04705 PF07687 Peptidase dimerisation domain BJD94_04710 PF02872 5'-nucleotidase, C-terminal domain BJD94_04710 PF00149 Calcineurin-like phosphoesterase BJD94_04715 PF04204 Homoserine O-succinyltransferase BJD94_04730 PF05971 RNA methyltransferase BJD94_04735 PF01863 Protein of unknown function DUF45 BJD94_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_04745 PF03466 LysR substrate binding domain BJD94_04750 PF07690 Major Facilitator Superfamily BJD94_04765 PF00005 ABC transporter BJD94_04770 PF01032 FecCD transport family BJD94_04775 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BJD94_04790 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BJD94_04795 PF02654 Cobalamin-5-phosphate synthase BJD94_04800 PF02277 Phosphoribosyltransferase BJD94_04820 PF08411 Exonuclease C-terminal BJD94_04820 PF00929 Exonuclease BJD94_04825 PF03788 LrgA family BJD94_04830 PF04172 LrgB-like family BJD94_04840 PF01259 SAICAR synthetase BJD94_04850 PF02253 Phospholipase A1 BJD94_04855 PF08482 ATP-dependent helicase C-terminal BJD94_04855 PF00271 Helicase conserved C-terminal domain BJD94_04855 PF04408 Helicase associated domain (HA2) BJD94_04855 PF00270 DEAD/DEAH box helicase BJD94_04860 PF03949 Malic enzyme, NAD binding domain BJD94_04860 PF00390 Malic enzyme, N-terminal domain BJD94_04865 PF02698 DUF218 domain BJD94_04870 PF00939 Sodium:sulfate symporter transmembrane region BJD94_04875 PF00072 Response regulator receiver domain BJD94_04875 PF00990 Diguanylate cyclase, GGDEF domain BJD94_04885 PF00266 Aminotransferase class-V BJD94_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_04900 PF00664 ABC transporter transmembrane region BJD94_04900 PF00005 ABC transporter BJD94_04905 PF00664 ABC transporter transmembrane region BJD94_04905 PF00005 ABC transporter BJD94_04910 PF00266 Aminotransferase class-V BJD94_04920 PF00512 His Kinase A (phospho-acceptor) domain BJD94_04920 PF13426 PAS domain BJD94_04920 PF00512 His Kinase A (phospho-acceptor) domain BJD94_04920 PF13188 PAS domain BJD94_04920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_04920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_04920 PF00989 PAS fold BJD94_04920 PF13188 PAS domain BJD94_04920 PF13426 PAS domain BJD94_04920 PF00989 PAS fold BJD94_04935 PF04993 TfoX N-terminal domain BJD94_04935 PF04994 TfoX C-terminal domain BJD94_04945 PF03956 Lysine exporter LysO BJD94_04955 PF00282 Pyridoxal-dependent decarboxylase conserved domain BJD94_04960 PF01380 SIS domain BJD94_04960 PF01418 Helix-turn-helix domain, rpiR family BJD94_04965 PF00465 Iron-containing alcohol dehydrogenase BJD94_04970 PF00462 Glutaredoxin BJD94_04975 PF02080 TrkA-C domain BJD94_04975 PF06826 Predicted Permease Membrane Region BJD94_04980 PF07055 Enoyl reductase FAD binding domain BJD94_04980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BJD94_04980 PF12241 Trans-2-enoyl-CoA reductase catalytic region BJD94_04985 PF02770 Acyl-CoA dehydrogenase, middle domain BJD94_04985 PF09317 Domain of unknown function (DUF1974) BJD94_04985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD94_04985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD94_04995 PF06965 Na+/H+ antiporter 1 BJD94_05010 PF00005 ABC transporter BJD94_05015 PF11066 Protein of unknown function (DUF2867) BJD94_05015 PF13460 NAD(P)H-binding BJD94_05025 PF07690 Major Facilitator Superfamily BJD94_05030 PF01479 S4 domain BJD94_05030 PF00849 RNA pseudouridylate synthase BJD94_05035 PF00271 Helicase conserved C-terminal domain BJD94_05035 PF04851 Type III restriction enzyme, res subunit BJD94_05045 PF00072 Response regulator receiver domain BJD94_05045 PF00486 Transcriptional regulatory protein, C terminal BJD94_05050 PF00512 His Kinase A (phospho-acceptor) domain BJD94_05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_05050 PF00672 HAMP domain BJD94_05055 PF01386 Ribosomal L25p family BJD94_05070 PF00990 Diguanylate cyclase, GGDEF domain BJD94_05070 PF03707 Bacterial signalling protein N terminal repeat BJD94_05070 PF00563 EAL domain BJD94_05085 PF06945 Protein of unknown function (DUF1289) BJD94_05095 PF13416 Bacterial extracellular solute-binding protein BJD94_05100 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_05105 PF00005 ABC transporter BJD94_05110 PF01066 CDP-alcohol phosphatidyltransferase BJD94_05115 PF00158 Sigma-54 interaction domain BJD94_05115 PF01590 GAF domain BJD94_05120 PF03063 Prismane/CO dehydrogenase family BJD94_05125 PF00175 Oxidoreductase NAD-binding domain BJD94_05125 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_05125 PF00970 Oxidoreductase FAD-binding domain BJD94_05135 PF00849 RNA pseudouridylate synthase BJD94_05140 PF00672 HAMP domain BJD94_05140 PF12729 Four helix bundle sensory module for signal transduction BJD94_05140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_05145 PF00209 Sodium:neurotransmitter symporter family BJD94_05150 PF13396 Phospholipase_D-nuclease N-terminal BJD94_05150 PF13091 PLD-like domain BJD94_05155 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD94_05160 PF03352 Methyladenine glycosylase BJD94_05165 PF00873 AcrB/AcrD/AcrF family BJD94_05170 PF13533 Biotin-lipoyl like BJD94_05180 PF04024 PspC domain BJD94_05185 PF06667 Phage shock protein B BJD94_05190 PF04012 PspA/IM30 family BJD94_05195 PF00158 Sigma-54 interaction domain BJD94_05195 PF02954 Bacterial regulatory protein, Fis family BJD94_05200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_05205 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_05210 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_05210 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_05215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_05215 PF00005 ABC transporter BJD94_05220 PF00005 ABC transporter BJD94_05240 PF02833 DHHA2 domain BJD94_05240 PF01368 DHH family BJD94_05250 PF16875 Glycosyl hydrolase family 36 N-terminal domain BJD94_05250 PF16874 Glycosyl hydrolase family 36 C-terminal domain BJD94_05270 PF01568 Molydopterin dinucleotide binding domain BJD94_05270 PF00384 Molybdopterin oxidoreductase BJD94_05270 PF18364 Molybdopterin oxidoreductase N-terminal domain BJD94_05275 PF03264 NapC/NirT cytochrome c family, N-terminal region BJD94_05280 PF06796 Periplasmic nitrate reductase protein NapE BJD94_05285 PF03649 Uncharacterised protein family (UPF0014) BJD94_05290 PF01226 Formate/nitrite transporter BJD94_05310 PF03466 LysR substrate binding domain BJD94_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_05315 PF01370 NAD dependent epimerase/dehydratase family BJD94_05325 PF00265 Thymidine kinase BJD94_05330 PF09190 DALR domain BJD94_05330 PF01406 tRNA synthetases class I (C) catalytic domain BJD94_05335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD94_05340 PF00149 Calcineurin-like phosphoesterase BJD94_05345 PF08668 HDOD domain BJD94_05345 PF00563 EAL domain BJD94_05350 PF02810 SEC-C motif BJD94_05355 PF01502 Phosphoribosyl-AMP cyclohydrolase BJD94_05355 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BJD94_05360 PF00977 Histidine biosynthesis protein BJD94_05380 PF00155 Aminotransferase class I and II BJD94_05385 PF00815 Histidinol dehydrogenase BJD94_05390 PF01634 ATP phosphoribosyltransferase BJD94_05390 PF08029 HisG, C-terminal domain BJD94_05395 PF03553 Na+/H+ antiporter family BJD94_05400 PF00816 H-NS histone family BJD94_05405 PF00294 pfkB family carbohydrate kinase BJD94_05420 PF04356 Protein of unknown function (DUF489) BJD94_05425 PF00206 Lyase BJD94_05425 PF08328 Adenylosuccinate lyase C-terminal BJD94_05470 PF01435 Peptidase family M48 BJD94_05480 PF08241 Methyltransferase domain BJD94_05485 PF00155 Aminotransferase class I and II BJD94_05490 PF04055 Radical SAM superfamily BJD94_05490 PF06968 Biotin and Thiamin Synthesis associated domain BJD94_05500 PF02403 Seryl-tRNA synthetase N-terminal domain BJD94_05500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD94_05505 PF12002 MgsA AAA+ ATPase C terminal BJD94_05505 PF16193 AAA C-terminal domain BJD94_05505 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_05510 PF03548 Outer membrane lipoprotein carrier protein LolA BJD94_05515 PF01580 FtsK/SpoIIIE family BJD94_05515 PF09397 Ftsk gamma domain BJD94_05515 PF17854 FtsK alpha domain BJD94_05515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BJD94_05520 PF01037 Lrp/AsnC ligand binding domain BJD94_05525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BJD94_05525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BJD94_05535 PF03466 LysR substrate binding domain BJD94_05535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_05545 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BJD94_05570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_05575 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_05575 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_05580 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_05585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BJD94_05590 PF18073 Rubredoxin metal binding domain BJD94_05595 PF06305 Lipopolysaccharide assembly protein A domain BJD94_05600 PF00216 Bacterial DNA-binding protein BJD94_05605 PF00575 S1 RNA binding domain BJD94_05610 PF02224 Cytidylate kinase BJD94_05615 PF01343 Peptidase family S49 BJD94_05615 PF08496 Peptidase family S49 N-terminal BJD94_05620 PF00106 short chain dehydrogenase BJD94_05635 PF02811 PHP domain BJD94_05635 PF14579 Helix-hairpin-helix motif BJD94_05635 PF01336 OB-fold nucleic acid binding domain BJD94_05635 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD94_05635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD94_05640 PF01584 CheW-like domain BJD94_05640 PF00072 Response regulator receiver domain BJD94_05645 PF00480 ROK family BJD94_05650 PF02887 Pyruvate kinase, alpha/beta domain BJD94_05650 PF00224 Pyruvate kinase, barrel domain BJD94_05655 PF01734 Patatin-like phospholipase BJD94_05665 PF00209 Sodium:neurotransmitter symporter family BJD94_05675 PF00367 phosphotransferase system, EIIB BJD94_05675 PF02378 Phosphotransferase system, EIIC BJD94_05680 PF01026 TatD related DNase BJD94_05685 PF09115 DNA polymerase III, delta subunit, C terminal BJD94_05690 PF02223 Thymidylate kinase BJD94_05695 PF02618 YceG-like family BJD94_05700 PF01063 Amino-transferase class IV BJD94_05705 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD94_05705 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD94_05710 PF00550 Phosphopantetheine attachment site BJD94_05720 PF00698 Acyl transferase domain BJD94_05725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD94_05725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD94_05730 PF02504 Fatty acid synthesis protein BJD94_05735 PF01783 Ribosomal L32p protein family BJD94_05740 PF02620 Large ribosomal RNA subunit accumulation protein YceD BJD94_05745 PF02545 Maf-like protein BJD94_05750 PF00849 RNA pseudouridylate synthase BJD94_05750 PF01479 S4 domain BJD94_05755 PF12111 Polyribonucleotide phosphorylase C terminal BJD94_05755 PF10150 Ribonuclease E/G family BJD94_05755 PF00575 S1 RNA binding domain BJD94_05760 PF00916 Sulfate permease family BJD94_05760 PF01740 STAS domain BJD94_05765 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD94_05770 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BJD94_05770 PF12557 Cob(I)alamin adenosyltransferase N terminal BJD94_05780 PF00485 Phosphoribulokinase / Uridine kinase family BJD94_05785 PF10609 NUBPL iron-transfer P-loop NTPase BJD94_05790 PF01588 Putative tRNA binding domain BJD94_05790 PF09334 tRNA synthetases class I (M) BJD94_05800 PF03918 Cytochrome C biogenesis protein BJD94_05805 PF08534 Redoxin BJD94_05810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD94_05810 PF01578 Cytochrome C assembly protein BJD94_05815 PF03916 Polysulphide reductase, NrfD BJD94_05820 PF13247 4Fe-4S dicluster domain BJD94_05830 PF02335 Cytochrome c552 BJD94_05845 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD94_05845 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD94_05860 PF03477 ATP cone domain BJD94_05860 PF00317 Ribonucleotide reductase, all-alpha domain BJD94_05860 PF02867 Ribonucleotide reductase, barrel domain BJD94_05865 PF00268 Ribonucleotide reductase, small chain BJD94_05875 PF00994 Probable molybdopterin binding domain BJD94_05895 PF03435 Saccharopine dehydrogenase NADP binding domain BJD94_05895 PF16653 Saccharopine dehydrogenase C-terminal domain BJD94_05900 PF00202 Aminotransferase class-III BJD94_05925 PF01066 CDP-alcohol phosphatidyltransferase BJD94_05935 PF00072 Response regulator receiver domain BJD94_05935 PF00196 Bacterial regulatory proteins, luxR family BJD94_05940 PF00136 DNA polymerase family B BJD94_05940 PF03104 DNA polymerase family B, exonuclease domain BJD94_05945 PF08447 PAS fold BJD94_05945 PF00990 Diguanylate cyclase, GGDEF domain BJD94_05945 PF00563 EAL domain BJD94_05945 PF08448 PAS fold BJD94_05955 PF09285 Elongation factor P, C-terminal BJD94_05955 PF08207 Elongation factor P (EF-P) KOW-like domain BJD94_05955 PF01132 Elongation factor P (EF-P) OB domain BJD94_05960 PF04269 Protein of unknown function, DUF440 BJD94_05965 PF01479 S4 domain BJD94_05965 PF00849 RNA pseudouridylate synthase BJD94_05975 PF01300 Telomere recombination BJD94_05980 PF02811 PHP domain BJD94_05985 PF08056 Tryptophan operon leader peptide BJD94_05990 PF00425 chorismate binding enzyme BJD94_05990 PF04715 Anthranilate synthase component I, N terminal region BJD94_05995 PF00117 Glutamine amidotransferase class-I BJD94_06000 PF00591 Glycosyl transferase family, a/b domain BJD94_06000 PF02885 Glycosyl transferase family, helical bundle domain BJD94_06005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BJD94_06005 PF00218 Indole-3-glycerol phosphate synthase BJD94_06010 PF00291 Pyridoxal-phosphate dependent enzyme BJD94_06015 PF00290 Tryptophan synthase alpha chain BJD94_06020 PF00375 Sodium:dicarboxylate symporter family BJD94_06030 PF04279 Intracellular septation protein A BJD94_06035 PF03061 Thioesterase superfamily BJD94_06040 PF03795 YCII-related domain BJD94_06050 PF13409 Glutathione S-transferase, N-terminal domain BJD94_06055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_06055 PF00005 ABC transporter BJD94_06060 PF00005 ABC transporter BJD94_06060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_06065 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_06065 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_06070 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_06075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_06080 PF02391 MoaE protein BJD94_06085 PF02597 ThiS family BJD94_06090 PF01967 MoaC family BJD94_06095 PF00994 Probable molybdopterin binding domain BJD94_06100 PF06463 Molybdenum Cofactor Synthesis C BJD94_06100 PF04055 Radical SAM superfamily BJD94_06105 PF01933 Uncharacterised protein family UPF0052 BJD94_06110 PF01627 Hpt domain BJD94_06115 PF00072 Response regulator receiver domain BJD94_06115 PF00158 Sigma-54 interaction domain BJD94_06115 PF02954 Bacterial regulatory protein, Fis family BJD94_06120 PF04851 Type III restriction enzyme, res subunit BJD94_06120 PF02151 UvrB/uvrC motif BJD94_06120 PF12344 Ultra-violet resistance protein B BJD94_06120 PF17757 UvrB interaction domain BJD94_06120 PF00271 Helicase conserved C-terminal domain BJD94_06135 PF02508 Rnf-Nqr subunit, membrane protein BJD94_06140 PF04060 Putative Fe-S cluster BJD94_06145 PF12838 4Fe-4S dicluster domain BJD94_06145 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BJD94_06145 PF13375 RnfC Barrel sandwich hybrid domain BJD94_06145 PF10531 SLBB domain BJD94_06150 PF03116 NQR2, RnfD, RnfE family BJD94_06155 PF04205 FMN-binding domain BJD94_06160 PF02508 Rnf-Nqr subunit, membrane protein BJD94_06165 PF10576 Iron-sulfur binding domain of endonuclease III BJD94_06165 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD94_06165 PF00633 Helix-hairpin-helix motif BJD94_06170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_06175 PF10952 Protein of unknown function (DUF2753) BJD94_06180 PF00691 OmpA family BJD94_06180 PF18393 MotY N-terminal domain BJD94_06185 PF00929 Exonuclease BJD94_06190 PF13726 Na+-H+ antiporter family BJD94_06190 PF03553 Na+/H+ antiporter family BJD94_06200 PF00462 Glutaredoxin BJD94_06205 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD94_06205 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD94_06220 PF00465 Iron-containing alcohol dehydrogenase BJD94_06220 PF00171 Aldehyde dehydrogenase family BJD94_06225 PF01914 MarC family integral membrane protein BJD94_06230 PF00520 Ion transport protein BJD94_06230 PF00027 Cyclic nucleotide-binding domain BJD94_06240 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD94_06240 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD94_06245 PF03553 Na+/H+ antiporter family BJD94_06260 PF04245 37-kD nucleoid-associated bacterial protein BJD94_06265 PF07208 Protein of unknown function (DUF1414) BJD94_06270 PF11893 Domain of unknown function (DUF3413) BJD94_06270 PF00884 Sulfatase BJD94_06280 PF02080 TrkA-C domain BJD94_06280 PF02254 TrkA-N domain BJD94_06285 PF02386 Cation transport protein BJD94_06290 PF04074 YhcH/YjgK/YiaL BJD94_06295 PF13091 PLD-like domain BJD94_06300 PF00072 Response regulator receiver domain BJD94_06300 PF00990 Diguanylate cyclase, GGDEF domain BJD94_06305 PF00072 Response regulator receiver domain BJD94_06305 PF09308 LuxQ, periplasmic BJD94_06305 PF00512 His Kinase A (phospho-acceptor) domain BJD94_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_06310 PF00850 Histone deacetylase domain BJD94_06315 PF01131 DNA topoisomerase BJD94_06315 PF01751 Toprim domain BJD94_06320 PF00881 Nitroreductase family BJD94_06325 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_06325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD94_06330 PF01343 Peptidase family S49 BJD94_06335 PF17763 Glutaminase/Asparaginase C-terminal domain BJD94_06335 PF00710 Asparaginase, N-terminal BJD94_06340 PF07023 Protein of unknown function (DUF1315) BJD94_06350 PF01641 SelR domain BJD94_06355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD94_06355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD94_06360 PF01263 Aldose 1-epimerase BJD94_06365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_06365 PF00672 HAMP domain BJD94_06365 PF02743 Cache domain BJD94_06380 PF07969 Amidohydrolase family BJD94_06385 PF06965 Na+/H+ antiporter 1 BJD94_06390 PF01145 SPFH domain / Band 7 family BJD94_06395 PF01145 SPFH domain / Band 7 family BJD94_06410 PF00563 EAL domain BJD94_06410 PF03707 Bacterial signalling protein N terminal repeat BJD94_06410 PF00990 Diguanylate cyclase, GGDEF domain BJD94_06420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD94_06425 PF09619 Type III secretion system lipoprotein chaperone (YscW) BJD94_06440 PF13404 AsnC-type helix-turn-helix domain BJD94_06440 PF01037 Lrp/AsnC ligand binding domain BJD94_06445 PF00291 Pyridoxal-phosphate dependent enzyme BJD94_06475 PF00873 AcrB/AcrD/AcrF family BJD94_06480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_06525 PF07690 Major Facilitator Superfamily BJD94_06530 PF03601 Conserved hypothetical protein 698 BJD94_06535 PF00501 AMP-binding enzyme BJD94_06535 PF13193 AMP-binding enzyme C-terminal domain BJD94_06540 PF13378 Enolase C-terminal domain-like BJD94_06545 PF00378 Enoyl-CoA hydratase/isomerase BJD94_06550 PF12697 Alpha/beta hydrolase family BJD94_06555 PF16582 Middle domain of thiamine pyrophosphate BJD94_06555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD94_06555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD94_06560 PF00425 chorismate binding enzyme BJD94_06565 PF00155 Aminotransferase class I and II BJD94_06575 PF01966 HD domain BJD94_06575 PF13286 Phosphohydrolase-associated domain BJD94_06595 PF13145 PPIC-type PPIASE domain BJD94_06600 PF00216 Bacterial DNA-binding protein BJD94_06605 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD94_06605 PF02190 ATP-dependent protease La (LON) substrate-binding domain BJD94_06605 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_06610 PF10431 C-terminal, D2-small domain, of ClpB protein BJD94_06610 PF07724 AAA domain (Cdc48 subfamily) BJD94_06610 PF06689 ClpX C4-type zinc finger BJD94_06615 PF00574 Clp protease BJD94_06620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_06620 PF05697 Bacterial trigger factor protein (TF) BJD94_06620 PF05698 Bacterial trigger factor protein (TF) C-terminus BJD94_06625 PF00512 His Kinase A (phospho-acceptor) domain BJD94_06625 PF02743 Cache domain BJD94_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_06630 PF00158 Sigma-54 interaction domain BJD94_06630 PF00072 Response regulator receiver domain BJD94_06630 PF02954 Bacterial regulatory protein, Fis family BJD94_06635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BJD94_06640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BJD94_06645 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD94_06655 PF00005 ABC transporter BJD94_06655 PF17912 MalK OB fold domain BJD94_06655 PF03459 TOBE domain BJD94_06660 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_06670 PF01547 Bacterial extracellular solute-binding protein BJD94_06675 PF00672 HAMP domain BJD94_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_06675 PF00512 His Kinase A (phospho-acceptor) domain BJD94_06680 PF00072 Response regulator receiver domain BJD94_06680 PF00486 Transcriptional regulatory protein, C terminal BJD94_06685 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BJD94_06690 PF02743 Cache domain BJD94_06690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_06690 PF00672 HAMP domain BJD94_06700 PF04820 Tryptophan halogenase BJD94_06730 PF00550 Phosphopantetheine attachment site BJD94_06755 PF00221 Aromatic amino acid lyase BJD94_06780 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD94_06780 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD94_06795 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD94_06795 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD94_06805 PF00512 His Kinase A (phospho-acceptor) domain BJD94_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_06805 PF18719 ArlS sensor domain BJD94_06810 PF00486 Transcriptional regulatory protein, C terminal BJD94_06810 PF00072 Response regulator receiver domain BJD94_06820 PF07662 Na+ dependent nucleoside transporter C-terminus BJD94_06820 PF07670 Nucleoside recognition BJD94_06820 PF01773 Na+ dependent nucleoside transporter N-terminus BJD94_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_06825 PF03466 LysR substrate binding domain BJD94_06830 PF13406 Transglycosylase SLT domain BJD94_06835 PF05166 YcgL domain BJD94_06840 PF03775 Septum formation inhibitor MinC, C-terminal domain BJD94_06840 PF05209 Septum formation inhibitor MinC, N-terminal domain BJD94_06845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD94_06850 PF03776 Septum formation topological specificity factor MinE BJD94_06855 PF00570 HRDC domain BJD94_06855 PF01612 3'-5' exonuclease BJD94_06865 PF00561 alpha/beta hydrolase fold BJD94_06880 PF00814 Glycoprotease family BJD94_06885 PF04851 Type III restriction enzyme, res subunit BJD94_06885 PF13307 Helicase C-terminal domain BJD94_06895 PF00551 Formyl transferase BJD94_06895 PF01842 ACT domain BJD94_06900 PF06185 YecM protein BJD94_06905 PF05746 DALR anticodon binding domain BJD94_06905 PF03485 Arginyl tRNA synthetase N terminal domain BJD94_06905 PF00750 tRNA synthetases class I (R) BJD94_06920 PF02421 Ferrous iron transport protein B BJD94_06920 PF07670 Nucleoside recognition BJD94_06920 PF07664 Ferrous iron transport protein B C terminus BJD94_06925 PF04023 FeoA domain BJD94_06935 PF01297 Zinc-uptake complex component A periplasmic BJD94_06940 PF00005 ABC transporter BJD94_06945 PF00950 ABC 3 transport family BJD94_06950 PF00549 CoA-ligase BJD94_06950 PF02629 CoA binding domain BJD94_06955 PF08442 ATP-grasp domain BJD94_06955 PF00549 CoA-ligase BJD94_06960 PF00364 Biotin-requiring enzyme BJD94_06960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD94_06960 PF02817 e3 binding domain BJD94_06965 PF02779 Transketolase, pyrimidine binding domain BJD94_06965 PF16078 2-oxoglutarate dehydrogenase N-terminus BJD94_06965 PF00676 Dehydrogenase E1 component BJD94_06965 PF16870 2-oxoglutarate dehydrogenase C-terminal BJD94_06970 PF13085 2Fe-2S iron-sulfur cluster binding domain BJD94_06975 PF02910 Fumarate reductase flavoprotein C-term BJD94_06975 PF00890 FAD binding domain BJD94_06980 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD94_06990 PF00285 Citrate synthase, C-terminal domain BJD94_06995 PF01784 NIF3 (NGG1p interacting factor 3) BJD94_07005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_07005 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_07010 PF00375 Sodium:dicarboxylate symporter family BJD94_07020 PF13309 HTH domain BJD94_07020 PF08348 YheO-like PAS domain BJD94_07025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD94_07025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD94_07025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD94_07025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD94_07030 PF17206 SeqA protein N-terminal domain BJD94_07030 PF03925 SeqA protein C-terminal domain BJD94_07035 PF12697 Alpha/beta hydrolase family BJD94_07045 PF00258 Flavodoxin BJD94_07055 PF01475 Ferric uptake regulator family BJD94_07060 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BJD94_07060 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD94_07065 PF00367 phosphotransferase system, EIIB BJD94_07065 PF02378 Phosphotransferase system, EIIC BJD94_07070 PF01979 Amidohydrolase family BJD94_07075 PF00480 ROK family BJD94_07075 PF01047 MarR family BJD94_07080 PF00999 Sodium/hydrogen exchanger family BJD94_07080 PF02254 TrkA-N domain BJD94_07085 PF00733 Asparagine synthase BJD94_07085 PF13537 Glutamine amidotransferase domain BJD94_07095 PF00854 POT family BJD94_07105 PF00762 Ferrochelatase BJD94_07110 PF05191 Adenylate kinase, active site lid BJD94_07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_07115 PF00183 Hsp90 protein BJD94_07120 PF00486 Transcriptional regulatory protein, C terminal BJD94_07125 PF17323 Trans-membrane regulatory protein ToxS BJD94_07140 PF12850 Calcineurin-like phosphoesterase superfamily domain BJD94_07155 PF07556 Protein of unknown function (DUF1538) BJD94_07160 PF07556 Protein of unknown function (DUF1538) BJD94_07165 PF01370 NAD dependent epimerase/dehydratase family BJD94_07165 PF08338 Domain of unknown function (DUF1731) BJD94_07170 PF00106 short chain dehydrogenase BJD94_07175 PF00085 Thioredoxin BJD94_07180 PF16200 C-terminal region of band_7 BJD94_07180 PF01145 SPFH domain / Band 7 family BJD94_07200 PF03120 NAD-dependent DNA ligase OB-fold domain BJD94_07200 PF12826 Helix-hairpin-helix motif BJD94_07200 PF00533 BRCA1 C Terminus (BRCT) domain BJD94_07200 PF01653 NAD-dependent DNA ligase adenylation domain BJD94_07200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BJD94_07205 PF04354 ZipA, C-terminal FtsZ-binding domain BJD94_07215 PF00291 Pyridoxal-phosphate dependent enzyme BJD94_07220 PF00381 PTS HPr component phosphorylation site BJD94_07225 PF05524 PEP-utilising enzyme, N-terminal BJD94_07225 PF00391 PEP-utilising enzyme, mobile domain BJD94_07225 PF02896 PEP-utilising enzyme, TIM barrel domain BJD94_07230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BJD94_07235 PF07196 Flagellin hook IN motif BJD94_07235 PF00700 Bacterial flagellin C-terminal helical region BJD94_07235 PF00669 Bacterial flagellin N-terminal helical region BJD94_07240 PF00700 Bacterial flagellin C-terminal helical region BJD94_07240 PF00669 Bacterial flagellin N-terminal helical region BJD94_07240 PF07196 Flagellin hook IN motif BJD94_07250 PF00700 Bacterial flagellin C-terminal helical region BJD94_07250 PF00669 Bacterial flagellin N-terminal helical region BJD94_07250 PF07196 Flagellin hook IN motif BJD94_07255 PF00669 Bacterial flagellin N-terminal helical region BJD94_07260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD94_07260 PF07196 Flagellin hook IN motif BJD94_07265 PF10135 Rod binding protein BJD94_07265 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD94_07270 PF02119 Flagellar P-ring protein BJD94_07275 PF02107 Flagellar L-ring protein BJD94_07280 PF00460 Flagella basal body rod protein BJD94_07280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD94_07285 PF00460 Flagella basal body rod protein BJD94_07285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD94_07290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD94_07290 PF07559 Flagellar basal body protein FlaE BJD94_07290 PF00460 Flagella basal body rod protein BJD94_07295 PF13861 FlgD Tudor-like domain BJD94_07295 PF13860 FlgD Ig-like domain BJD94_07295 PF03963 Flagellar hook capping protein - N-terminal region BJD94_07300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD94_07300 PF00460 Flagella basal body rod protein BJD94_07305 PF00460 Flagella basal body rod protein BJD94_07310 PF03705 CheR methyltransferase, all-alpha domain BJD94_07310 PF01739 CheR methyltransferase, SAM binding domain BJD94_07315 PF01584 CheW-like domain BJD94_07315 PF00072 Response regulator receiver domain BJD94_07360 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD94_07365 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BJD94_07370 PF13609 Gram-negative porin BJD94_07375 PF00403 Heavy-metal-associated domain BJD94_07385 PF02838 Glycosyl hydrolase family 20, domain 2 BJD94_07385 PF00728 Glycosyl hydrolase family 20, catalytic domain BJD94_07385 PF03173 Putative carbohydrate binding domain BJD94_07385 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BJD94_07390 PF01963 TraB family BJD94_07410 PF01713 Smr domain BJD94_07415 PF00849 RNA pseudouridylate synthase BJD94_07415 PF01479 S4 domain BJD94_07430 PF04073 Aminoacyl-tRNA editing domain BJD94_07435 PF00149 Calcineurin-like phosphoesterase BJD94_07435 PF02872 5'-nucleotidase, C-terminal domain BJD94_07440 PF00793 DAHP synthetase I family BJD94_07445 PF13369 Transglutaminase-like superfamily BJD94_07450 PF04247 Invasion gene expression up-regulator, SirB BJD94_07455 PF13847 Methyltransferase domain BJD94_07455 PF17827 PrmC N-terminal domain BJD94_07460 PF03462 PCRF domain BJD94_07460 PF00472 RF-1 domain BJD94_07465 PF01488 Shikimate / quinate 5-dehydrogenase BJD94_07465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BJD94_07465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BJD94_07470 PF03550 Outer membrane lipoprotein LolB BJD94_07475 PF00288 GHMP kinases N terminal domain BJD94_07475 PF08544 GHMP kinases C terminal BJD94_07480 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BJD94_07480 PF14572 Phosphoribosyl synthetase-associated domain BJD94_07485 PF01195 Peptidyl-tRNA hydrolase BJD94_07490 PF01926 50S ribosome-binding GTPase BJD94_07490 PF06071 Protein of unknown function (DUF933) BJD94_07570 PF01494 FAD binding domain BJD94_07575 PF01938 TRAM domain BJD94_07575 PF00919 Uncharacterized protein family UPF0004 BJD94_07575 PF04055 Radical SAM superfamily BJD94_07580 PF02562 PhoH-like protein BJD94_07585 PF02130 Uncharacterized protein family UPF0054 BJD94_07590 PF03471 Transporter associated domain BJD94_07590 PF00571 CBS domain BJD94_07595 PF00795 Carbon-nitrogen hydrolase BJD94_07600 PF07295 Zinc-ribbon containing domain BJD94_07605 PF08264 Anticodon-binding domain of tRNA BJD94_07605 PF13603 Leucyl-tRNA synthetase, Domain 2 BJD94_07605 PF00133 tRNA synthetases class I (I, L, M and V) BJD94_07610 PF04390 Lipopolysaccharide-assembly BJD94_07615 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BJD94_07615 PF06144 DNA polymerase III, delta subunit BJD94_07625 PF02590 Predicted SPOUT methyltransferase BJD94_07630 PF03717 Penicillin-binding Protein dimerisation domain BJD94_07630 PF00905 Penicillin binding protein transpeptidase domain BJD94_07635 PF01098 Cell cycle protein BJD94_07640 PF03330 Lytic transglycolase BJD94_07640 PF05036 Sporulation related domain BJD94_07645 PF07943 Penicillin-binding protein 5, C-terminal domain BJD94_07645 PF00768 D-alanyl-D-alanine carboxypeptidase BJD94_07650 PF04359 Protein of unknown function (DUF493) BJD94_07655 PF03099 Biotin/lipoate A/B protein ligase family BJD94_07660 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BJD94_07660 PF04055 Radical SAM superfamily BJD94_07670 PF00464 Serine hydroxymethyltransferase BJD94_07700 PF16657 Maltogenic Amylase, C-terminal domain BJD94_07700 PF00128 Alpha amylase, catalytic domain BJD94_07705 PF00367 phosphotransferase system, EIIB BJD94_07705 PF02378 Phosphotransferase system, EIIC BJD94_07710 PF00356 Bacterial regulatory proteins, lacI family BJD94_07720 PF00005 ABC transporter BJD94_07720 PF09383 NIL domain BJD94_07725 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_07730 PF03180 NLPA lipoprotein BJD94_07735 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) BJD94_07740 PF07348 Syd protein (SUKH-2) BJD94_07745 PF14489 QueF-like protein BJD94_07745 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BJD94_07755 PF00990 Diguanylate cyclase, GGDEF domain BJD94_07760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BJD94_07760 PF03641 Possible lysine decarboxylase BJD94_07760 PF11892 Domain of unknown function (DUF3412) BJD94_07765 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD94_07765 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD94_07770 PF01223 DNA/RNA non-specific endonuclease BJD94_07775 PF01728 FtsJ-like methyltransferase BJD94_07775 PF18125 RlmM ferredoxin-like domain BJD94_07780 PF04241 Protein of unknown function (DUF423) BJD94_07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_07790 PF03466 LysR substrate binding domain BJD94_07795 PF02568 Thiamine biosynthesis protein (ThiI) BJD94_07795 PF02926 THUMP domain BJD94_07800 PF00691 OmpA family BJD94_07800 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD94_07805 PF01618 MotA/TolQ/ExbB proton channel family BJD94_07810 PF02609 Exonuclease VII small subunit BJD94_07815 PF00348 Polyprenyl synthetase BJD94_07820 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BJD94_07820 PF02780 Transketolase, C-terminal domain BJD94_07820 PF02779 Transketolase, pyrimidine binding domain BJD94_07825 PF04608 Phosphatidylglycerophosphatase A BJD94_07830 PF00586 AIR synthase related protein, N-terminal domain BJD94_07830 PF02769 AIR synthase related protein, C-terminal domain BJD94_07835 PF01029 NusB family BJD94_07840 PF00885 6,7-dimethyl-8-ribityllumazine synthase BJD94_07845 PF00925 GTP cyclohydrolase II BJD94_07845 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BJD94_07850 PF00677 Lumazine binding domain BJD94_07855 PF01872 RibD C-terminal domain BJD94_07855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD94_07860 PF03477 ATP cone domain BJD94_07870 PF01472 PUA domain BJD94_07870 PF00696 Amino acid kinase family BJD94_07875 PF07417 Sigma factor-binding transcriptional regulator Crl BJD94_07885 PF00156 Phosphoribosyl transferase domain BJD94_07890 PF00860 Permease family BJD94_07920 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BJD94_07920 PF02769 AIR synthase related protein, C-terminal domain BJD94_07920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BJD94_07925 PF01464 Transglycosylase SLT domain BJD94_07925 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_07930 PF14437 MafB19-like deaminase BJD94_07935 PF03466 LysR substrate binding domain BJD94_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_07940 PF08240 Alcohol dehydrogenase GroES-like domain BJD94_07940 PF00107 Zinc-binding dehydrogenase BJD94_07945 PF00756 Putative esterase BJD94_07950 PF03806 AbgT putative transporter family BJD94_07975 PF00114 Pilin (bacterial filament) BJD94_07975 PF07963 Prokaryotic N-terminal methylation motif BJD94_07980 PF00684 DnaJ central domain BJD94_07980 PF00226 DnaJ domain BJD94_07980 PF01556 DnaJ C terminal domain BJD94_07985 PF00012 Hsp70 protein BJD94_08010 PF00375 Sodium:dicarboxylate symporter family BJD94_08015 PF01025 GrpE BJD94_08020 PF01513 ATP-NAD kinase BJD94_08025 PF02463 RecF/RecN/SMC N terminal domain BJD94_08030 PF04355 SmpA / OmlA family BJD94_08035 PF03658 RnfH family Ubiquitin BJD94_08040 PF03364 Polyketide cyclase / dehydrase and lipid transport BJD94_08045 PF01668 SmpB protein BJD94_08085 PF03481 Putative GTP-binding controlling metal-binding BJD94_08085 PF01300 Telomere recombination BJD94_08095 PF02028 BCCT, betaine/carnitine/choline family transporter BJD94_08100 PF07885 Ion channel BJD94_08105 PF03466 LysR substrate binding domain BJD94_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_08110 PF01266 FAD dependent oxidoreductase BJD94_08115 PF01235 Sodium:alanine symporter family BJD94_08120 PF01184 GPR1/FUN34/yaaH family BJD94_08125 PF00704 Glycosyl hydrolases family 18 BJD94_08125 PF06483 Chitinase C BJD94_08130 PF00117 Glutamine amidotransferase class-I BJD94_08130 PF00958 GMP synthase C terminal domain BJD94_08130 PF02540 NAD synthase BJD94_08135 PF00571 CBS domain BJD94_08135 PF00478 IMP dehydrogenase / GMP reductase domain BJD94_08140 PF02601 Exonuclease VII, large subunit BJD94_08140 PF13742 OB-fold nucleic acid binding domain BJD94_08150 PF00990 Diguanylate cyclase, GGDEF domain BJD94_08150 PF13185 GAF domain BJD94_08160 PF01926 50S ribosome-binding GTPase BJD94_08160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BJD94_08165 PF13360 PQQ-like domain BJD94_08175 PF03129 Anticodon binding domain BJD94_08175 PF13393 Histidyl-tRNA synthetase BJD94_08180 PF04551 GcpE protein BJD94_08185 PF13464 Domain of unknown function (DUF4115) BJD94_08190 PF04055 Radical SAM superfamily BJD94_08195 PF00334 Nucleoside diphosphate kinase BJD94_08200 PF00883 Cytosol aminopeptidase family, catalytic domain BJD94_08200 PF12404 Peptidase BJD94_08205 PF04384 Iron-sulphur cluster assembly BJD94_08210 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_08215 PF00012 Hsp70 protein BJD94_08220 PF00226 DnaJ domain BJD94_08220 PF07743 HSCB C-terminal oligomerisation domain BJD94_08225 PF01521 Iron-sulphur cluster biosynthesis BJD94_08230 PF01592 NifU-like N terminal domain BJD94_08235 PF00266 Aminotransferase class-V BJD94_08240 PF02082 Transcriptional regulator BJD94_08245 PF00588 SpoU rRNA Methylase family BJD94_08250 PF00459 Inositol monophosphatase family BJD94_08265 PF07549 SecD/SecF GG Motif BJD94_08265 PF02355 Protein export membrane protein BJD94_08270 PF13721 SecD export protein N-terminal TM region BJD94_08270 PF07549 SecD/SecF GG Motif BJD94_08270 PF02355 Protein export membrane protein BJD94_08275 PF02699 Preprotein translocase subunit BJD94_08280 PF01702 Queuine tRNA-ribosyltransferase BJD94_08285 PF02547 Queuosine biosynthesis protein BJD94_08295 PF00571 CBS domain BJD94_08300 PF00463 Isocitrate lyase family BJD94_08305 PF01274 Malate synthase BJD94_08310 PF03466 LysR substrate binding domain BJD94_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_08315 PF10417 C-terminal domain of 1-Cys peroxiredoxin BJD94_08315 PF00578 AhpC/TSA family BJD94_08320 PF03932 CutC family BJD94_08325 PF03976 Polyphosphate kinase 2 (PPK2) BJD94_08330 PF01895 PhoU domain BJD94_08335 PF00005 ABC transporter BJD94_08340 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_08345 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_08350 PF17941 Polyphosphate kinase C-terminal domain 1 BJD94_08350 PF13089 Polyphosphate kinase N-terminal domain BJD94_08350 PF02503 Polyphosphate kinase middle domain BJD94_08350 PF13090 Polyphosphate kinase C-terminal domain 2 BJD94_08355 PF02541 Ppx/GppA phosphatase family BJD94_08360 PF12849 PBP superfamily domain BJD94_08365 PF11808 Phosphate regulon sensor protein PhoR BJD94_08365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_08365 PF00512 His Kinase A (phospho-acceptor) domain BJD94_08365 PF00989 PAS fold BJD94_08370 PF00072 Response regulator receiver domain BJD94_08370 PF00486 Transcriptional regulatory protein, C terminal BJD94_08375 PF04381 Putative exonuclease, RdgC BJD94_08385 PF00037 4Fe-4S binding domain BJD94_08390 PF03411 Penicillin-insensitive murein endopeptidase BJD94_08425 PF10431 C-terminal, D2-small domain, of ClpB protein BJD94_08425 PF02861 Clp amino terminal domain, pathogenicity island component BJD94_08425 PF17871 AAA lid domain BJD94_08425 PF07724 AAA domain (Cdc48 subfamily) BJD94_08425 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_08435 PF01479 S4 domain BJD94_08435 PF00849 RNA pseudouridylate synthase BJD94_08440 PF13525 Outer membrane lipoprotein BJD94_08450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BJD94_08455 PF00800 Prephenate dehydratase BJD94_08455 PF01817 Chorismate mutase type II BJD94_08460 PF01931 Protein of unknown function DUF84 BJD94_08465 PF01371 Trp repressor protein BJD94_08470 PF01464 Transglycosylase SLT domain BJD94_08470 PF14718 Soluble lytic murein transglycosylase L domain BJD94_08475 PF00005 ABC transporter BJD94_08475 PF12848 ABC transporter BJD94_08480 PF07238 PilZ domain BJD94_08485 PF01551 Peptidase family M23 BJD94_08485 PF04225 Opacity-associated protein A LysM-like domain BJD94_08490 PF02153 Prephenate dehydrogenase BJD94_08490 PF01817 Chorismate mutase type II BJD94_08495 PF00793 DAHP synthetase I family BJD94_08500 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD94_08505 PF03702 Anhydro-N-acetylmuramic acid kinase BJD94_08520 PF02554 Carbon starvation protein CstA BJD94_08525 PF06580 Histidine kinase BJD94_08525 PF07694 5TMR of 5TMR-LYT BJD94_08530 PF00072 Response regulator receiver domain BJD94_08530 PF04397 LytTr DNA-binding domain BJD94_08535 PF02401 LytB protein BJD94_08540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_08545 PF01252 Signal peptidase (SPase) II BJD94_08550 PF00133 tRNA synthetases class I (I, L, M and V) BJD94_08550 PF08264 Anticodon-binding domain of tRNA BJD94_08550 PF06827 Zinc finger found in FPG and IleRS BJD94_08555 PF06574 FAD synthetase BJD94_08555 PF01687 Riboflavin kinase BJD94_08560 PF03023 Lipid II flippase MurJ BJD94_08565 PF01649 Ribosomal protein S20 BJD94_08570 PF01022 Bacterial regulatory protein, arsR family BJD94_08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_08575 PF03466 LysR substrate binding domain BJD94_08580 PF02690 Na+/Pi-cotransporter BJD94_08590 PF00303 Thymidylate synthase BJD94_08595 PF01790 Prolipoprotein diacylglyceryl transferase BJD94_08600 PF01925 Sulfite exporter TauE/SafE BJD94_08605 PF02896 PEP-utilising enzyme, TIM barrel domain BJD94_08605 PF05524 PEP-utilising enzyme, N-terminal BJD94_08605 PF01590 GAF domain BJD94_08605 PF00391 PEP-utilising enzyme, mobile domain BJD94_08615 PF02976 DNA mismatch repair enzyme MutH BJD94_08625 PF00248 Aldo/keto reductase family BJD94_08635 PF02830 V4R domain BJD94_08635 PF06505 Activator of aromatic catabolism BJD94_08635 PF02954 Bacterial regulatory protein, Fis family BJD94_08635 PF00158 Sigma-54 interaction domain BJD94_08640 PF00152 tRNA synthetases class II (D, K and N) BJD94_08640 PF01336 OB-fold nucleic acid binding domain BJD94_08645 PF00472 RF-1 domain BJD94_08645 PF03462 PCRF domain BJD94_08650 PF01368 DHH family BJD94_08650 PF02272 DHHA1 domain BJD94_08650 PF17768 RecJ OB domain BJD94_08655 PF10411 Disulfide bond isomerase protein N-terminus BJD94_08655 PF13098 Thioredoxin-like domain BJD94_08660 PF00589 Phage integrase family BJD94_08660 PF02899 Phage integrase, N-terminal SAM-like domain BJD94_08665 PF00258 Flavodoxin BJD94_08670 PF05525 Branched-chain amino acid transport protein BJD94_08675 PF05175 Methyltransferase small domain BJD94_08680 PF00270 DEAD/DEAH box helicase BJD94_08680 PF00271 Helicase conserved C-terminal domain BJD94_08685 PF03883 Peroxide stress protein YaaA BJD94_08690 PF01235 Sodium:alanine symporter family BJD94_08705 PF03167 Uracil DNA glycosylase superfamily BJD94_08710 PF01261 Xylose isomerase-like TIM barrel BJD94_08715 PF01228 Glycine radical BJD94_08720 PF14821 Threonine synthase N terminus BJD94_08720 PF00291 Pyridoxal-phosphate dependent enzyme BJD94_08725 PF00288 GHMP kinases N terminal domain BJD94_08725 PF08544 GHMP kinases C terminal BJD94_08730 PF00742 Homoserine dehydrogenase BJD94_08730 PF03447 Homoserine dehydrogenase, NAD binding domain BJD94_08730 PF13840 ACT domain BJD94_08730 PF01842 ACT domain BJD94_08730 PF00696 Amino acid kinase family BJD94_08740 PF03737 Aldolase/RraA BJD94_08750 PF00072 Response regulator receiver domain BJD94_08750 PF00486 Transcriptional regulatory protein, C terminal BJD94_08760 PF00512 His Kinase A (phospho-acceptor) domain BJD94_08760 PF00989 PAS fold BJD94_08760 PF18415 Histidine kinase receptor ArcB trans-membrane domain BJD94_08760 PF01627 Hpt domain BJD94_08760 PF00072 Response regulator receiver domain BJD94_08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_08765 PF00360 Phytochrome region BJD94_08765 PF01590 GAF domain BJD94_08765 PF00990 Diguanylate cyclase, GGDEF domain BJD94_08765 PF00563 EAL domain BJD94_08770 PF04055 Radical SAM superfamily BJD94_08770 PF16199 Radical_SAM C-terminal domain BJD94_08775 PF04898 Glutamate synthase central domain BJD94_08775 PF01493 GXGXG motif BJD94_08775 PF00310 Glutamine amidotransferases class-II BJD94_08775 PF01645 Conserved region in glutamate synthase BJD94_08780 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_08780 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BJD94_08785 PF01493 GXGXG motif BJD94_08785 PF01645 Conserved region in glutamate synthase BJD94_08785 PF04898 Glutamate synthase central domain BJD94_08785 PF00310 Glutamine amidotransferases class-II BJD94_08790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BJD94_08790 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_08800 PF01048 Phosphorylase superfamily BJD94_08805 PF03186 CobD/Cbib protein BJD94_08805 PF17113 Regulatory signalling modulator protein AmpE BJD94_08810 PF01497 Periplasmic binding protein BJD94_08815 PF03458 UPF0126 domain BJD94_08820 PF03466 LysR substrate binding domain BJD94_08820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_08825 PF01925 Sulfite exporter TauE/SafE BJD94_08835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BJD94_08835 PF02142 MGS-like domain BJD94_08835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD94_08840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BJD94_08840 PF00117 Glutamine amidotransferase class-I BJD94_08845 PF01113 Dihydrodipicolinate reductase, N-terminus BJD94_08845 PF05173 Dihydrodipicolinate reductase, C-terminus BJD94_08850 PF00293 NUDIX domain BJD94_08855 PF07516 SecA Wing and Scaffold domain BJD94_08855 PF02810 SEC-C motif BJD94_08855 PF07517 SecA DEAD-like domain BJD94_08855 PF01043 SecA preprotein cross-linking domain BJD94_08865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BJD94_08870 PF00091 Tubulin/FtsZ family, GTPase domain BJD94_08870 PF12327 FtsZ family, C-terminal domain BJD94_08875 PF02491 SHS2 domain inserted in FTSA BJD94_08880 PF03799 Cell division protein FtsQ BJD94_08880 PF08478 POTRA domain, FtsQ-type BJD94_08885 PF02875 Mur ligase family, glutamate ligase domain BJD94_08885 PF08245 Mur ligase middle domain BJD94_08885 PF01225 Mur ligase family, catalytic domain BJD94_08890 PF04101 Glycosyltransferase family 28 C-terminal domain BJD94_08890 PF03033 Glycosyltransferase family 28 N-terminal domain BJD94_08895 PF01098 Cell cycle protein BJD94_08900 PF02875 Mur ligase family, glutamate ligase domain BJD94_08900 PF08245 Mur ligase middle domain BJD94_08905 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BJD94_08905 PF00953 Glycosyl transferase family 4 BJD94_08910 PF08245 Mur ligase middle domain BJD94_08910 PF01225 Mur ligase family, catalytic domain BJD94_08910 PF02875 Mur ligase family, glutamate ligase domain BJD94_08915 PF08245 Mur ligase middle domain BJD94_08915 PF01225 Mur ligase family, catalytic domain BJD94_08915 PF02875 Mur ligase family, glutamate ligase domain BJD94_08920 PF03717 Penicillin-binding Protein dimerisation domain BJD94_08920 PF00905 Penicillin binding protein transpeptidase domain BJD94_08925 PF04999 Cell division protein FtsL BJD94_08930 PF01795 MraW methylase family BJD94_08940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD94_08945 PF04348 LppC putative lipoprotein BJD94_08950 PF02021 Uncharacterised protein family UPF0102 BJD94_08955 PF13580 SIS domain BJD94_08960 PF04972 BON domain BJD94_08965 PF04386 Stringent starvation protein B BJD94_08970 PF02798 Glutathione S-transferase, N-terminal domain BJD94_08970 PF00043 Glutathione S-transferase, C-terminal domain BJD94_08975 PF02167 Cytochrome C1 family BJD94_08980 PF00033 Cytochrome b/b6/petB BJD94_08980 PF00032 Cytochrome b(C-terminal)/b6/petD BJD94_08985 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BJD94_08985 PF00355 Rieske [2Fe-2S] domain BJD94_08990 PF00380 Ribosomal protein S9/S16 BJD94_08995 PF00572 Ribosomal protein L13 BJD94_09000 PF03969 AFG1-like ATPase BJD94_09005 PF06295 Protein of unknown function (DUF1043) BJD94_09010 PF00595 PDZ domain BJD94_09015 PF13180 PDZ domain BJD94_09020 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD94_09020 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD94_09025 PF01751 Toprim domain BJD94_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_09025 PF00986 DNA gyrase B subunit, carboxyl terminus BJD94_09025 PF00204 DNA gyrase B BJD94_09030 PF05728 Uncharacterised protein family (UPF0227) BJD94_09035 PF00149 Calcineurin-like phosphoesterase BJD94_09040 PF06853 Protein of unknown function (DUF1249) BJD94_09045 PF00293 NUDIX domain BJD94_09050 PF02321 Outer membrane efflux protein BJD94_09055 PF01467 Cytidylyltransferase-like BJD94_09055 PF00294 pfkB family carbohydrate kinase BJD94_09060 PF03710 Glutamate-ammonia ligase adenylyltransferase BJD94_09060 PF08335 GlnD PII-uridylyltransferase BJD94_09065 PF00672 HAMP domain BJD94_09065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_09065 PF12729 Four helix bundle sensory module for signal transduction BJD94_09070 PF07885 Ion channel BJD94_09075 PF01928 CYTH domain BJD94_09080 PF01865 Protein of unknown function DUF47 BJD94_09085 PF01384 Phosphate transporter family BJD94_09090 PF08239 Bacterial SH3 domain BJD94_09095 PF01471 Putative peptidoglycan binding domain BJD94_09095 PF13401 AAA domain BJD94_09100 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD94_09100 PF01966 HD domain BJD94_09100 PF01743 Poly A polymerase head domain BJD94_09105 PF02673 Bacitracin resistance protein BacA BJD94_09110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD94_09115 PF02152 Dihydroneopterin aldolase BJD94_09120 PF02660 Glycerol-3-phosphate acyltransferase BJD94_09125 PF12697 Alpha/beta hydrolase family BJD94_09130 PF00814 Glycoprotease family BJD94_09135 PF01165 Ribosomal protein S21 BJD94_09140 PF09424 Yqey-like protein BJD94_09145 PF08275 DNA primase catalytic core, N-terminal domain BJD94_09145 PF08278 DNA primase DnaG DnaB-binding BJD94_09145 PF01807 CHC2 zinc finger BJD94_09145 PF10410 DnaB-helicase binding domain of primase BJD94_09150 PF00140 Sigma-70 factor, region 1.2 BJD94_09150 PF04545 Sigma-70, region 4 BJD94_09150 PF04539 Sigma-70 region 3 BJD94_09150 PF04546 Sigma-70, non-essential region BJD94_09150 PF04542 Sigma-70 region 2 BJD94_09150 PF03979 Sigma-70 factor, region 1.1 BJD94_09160 PF00589 Phage integrase family BJD94_09160 PF13356 Arm DNA-binding domain BJD94_09215 PF06803 Protein of unknown function (DUF1232) BJD94_09230 PF04002 RadC-like JAB domain BJD94_09235 PF01548 Transposase BJD94_09235 PF02371 Transposase IS116/IS110/IS902 family BJD94_09255 PF10544 T5orf172 domain BJD94_09280 PF07804 HipA-like C-terminal domain BJD94_09280 PF13657 HipA N-terminal domain BJD94_09295 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD94_09300 PF01380 SIS domain BJD94_09305 PF00455 DeoR C terminal sensor domain BJD94_09305 PF08220 DeoR-like helix-turn-helix domain BJD94_09310 PF02887 Pyruvate kinase, alpha/beta domain BJD94_09310 PF00224 Pyruvate kinase, barrel domain BJD94_09320 PF07694 5TMR of 5TMR-LYT BJD94_09320 PF00990 Diguanylate cyclase, GGDEF domain BJD94_09325 PF10369 Small subunit of acetolactate synthase BJD94_09330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD94_09330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD94_09330 PF00205 Thiamine pyrophosphate enzyme, central domain BJD94_09335 PF00501 AMP-binding enzyme BJD94_09340 PF03466 LysR substrate binding domain BJD94_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_09350 PF01569 PAP2 superfamily BJD94_09360 PF00682 HMGL-like BJD94_09360 PF08502 LeuA allosteric (dimerisation) domain BJD94_09365 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD94_09370 PF00330 Aconitase family (aconitate hydratase) BJD94_09375 PF00694 Aconitase C-terminal domain BJD94_09385 PF05099 Tellurite resistance protein TerB BJD94_09385 PF00226 DnaJ domain BJD94_09390 PF03968 OstA-like protein BJD94_09390 PF04453 LPS transport system D BJD94_09395 PF00639 PPIC-type PPIASE domain BJD94_09395 PF09312 SurA N-terminal domain BJD94_09400 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BJD94_09405 PF00398 Ribosomal RNA adenine dimethylase BJD94_09410 PF04379 ApaG domain BJD94_09415 PF00149 Calcineurin-like phosphoesterase BJD94_09420 PF00186 Dihydrofolate reductase BJD94_09425 PF12821 Threonine/Serine exporter, ThrE BJD94_09430 PF06738 Putative threonine/serine exporter BJD94_09435 PF01018 GTP1/OBG BJD94_09435 PF01926 50S ribosome-binding GTPase BJD94_09440 PF01016 Ribosomal L27 protein BJD94_09445 PF00829 Ribosomal prokaryotic L21 protein BJD94_09450 PF00348 Polyprenyl synthetase BJD94_09455 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BJD94_09455 PF00056 lactate/malate dehydrogenase, NAD binding domain BJD94_09460 PF01316 Arginine repressor, DNA binding domain BJD94_09460 PF02863 Arginine repressor, C-terminal domain BJD94_09465 PF16868 NMT1-like family BJD94_09475 PF00582 Universal stress protein family BJD94_09480 PF01553 Acyltransferase BJD94_09485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD94_09490 PF01722 BolA-like protein BJD94_09500 PF05494 MlaC protein BJD94_09505 PF02470 MlaD protein BJD94_09510 PF02405 Permease MlaE BJD94_09515 PF00005 ABC transporter BJD94_09520 PF01699 Sodium/calcium exchanger protein BJD94_09525 PF00571 CBS domain BJD94_09525 PF01380 SIS domain BJD94_09540 PF03968 OstA-like protein BJD94_09545 PF12399 Branched-chain amino acid ATP-binding cassette transporter BJD94_09545 PF00005 ABC transporter BJD94_09550 PF04963 Sigma-54 factor, core binding domain BJD94_09550 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD94_09550 PF04552 Sigma-54, DNA binding domain BJD94_09555 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BJD94_09560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_09565 PF03668 P-loop ATPase protein family BJD94_09570 PF00381 PTS HPr component phosphorylation site BJD94_09580 PF01523 Putative modulator of DNA gyrase BJD94_09585 PF04751 Protein of unknown function (DUF615) BJD94_09590 PF00005 ABC transporter BJD94_09595 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_09605 PF02441 Flavoprotein BJD94_09610 PF08245 Mur ligase middle domain BJD94_09610 PF02875 Mur ligase family, glutamate ligase domain BJD94_09610 PF01225 Mur ligase family, catalytic domain BJD94_09615 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BJD94_09620 PF00719 Inorganic pyrophosphatase BJD94_09630 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BJD94_09635 PF04357 TamB, inner membrane protein subunit of TAM complex BJD94_09640 PF17243 POTRA domain TamA domain 1 BJD94_09640 PF07244 Surface antigen variable number repeat BJD94_09640 PF01103 Surface antigen BJD94_09645 PF01625 Peptide methionine sulfoxide reductase BJD94_09655 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BJD94_09670 PF02687 FtsX-like permease family BJD94_09670 PF00005 ABC transporter BJD94_09670 PF12704 MacB-like periplasmic core domain BJD94_09695 PF03600 Citrate transporter BJD94_09695 PF02080 TrkA-C domain BJD94_09700 PF00009 Elongation factor Tu GTP binding domain BJD94_09705 PF01507 Phosphoadenosine phosphosulfate reductase family BJD94_09710 PF10414 Sirohaem synthase dimerisation region BJD94_09710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD94_09710 PF14824 Sirohaem biosynthesis protein central BJD94_09715 PF00149 Calcineurin-like phosphoesterase BJD94_09715 PF02872 5'-nucleotidase, C-terminal domain BJD94_09725 PF13673 Acetyltransferase (GNAT) domain BJD94_09735 PF08525 Opacity-associated protein A N-terminal motif BJD94_09735 PF04225 Opacity-associated protein A LysM-like domain BJD94_09740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD94_09740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_09750 PF01196 Ribosomal protein L17 BJD94_09755 PF01000 RNA polymerase Rpb3/RpoA insert domain BJD94_09755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BJD94_09755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BJD94_09760 PF00163 Ribosomal protein S4/S9 N-terminal domain BJD94_09760 PF01479 S4 domain BJD94_09765 PF00411 Ribosomal protein S11 BJD94_09770 PF00416 Ribosomal protein S13/S18 BJD94_09775 PF00444 Ribosomal protein L36 BJD94_09780 PF00344 SecY translocase BJD94_09785 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BJD94_09790 PF00327 Ribosomal protein L30p/L7e BJD94_09795 PF03719 Ribosomal protein S5, C-terminal domain BJD94_09795 PF00333 Ribosomal protein S5, N-terminal domain BJD94_09800 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BJD94_09805 PF00347 Ribosomal protein L6 BJD94_09810 PF00410 Ribosomal protein S8 BJD94_09815 PF00253 Ribosomal protein S14p/S29e BJD94_09820 PF00281 Ribosomal protein L5 BJD94_09820 PF00673 ribosomal L5P family C-terminus BJD94_09825 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BJD94_09825 PF00467 KOW motif BJD94_09830 PF00238 Ribosomal protein L14p/L23e BJD94_09835 PF00366 Ribosomal protein S17 BJD94_09840 PF00831 Ribosomal L29 protein BJD94_09845 PF00252 Ribosomal protein L16p/L10e BJD94_09850 PF00189 Ribosomal protein S3, C-terminal domain BJD94_09850 PF07650 KH domain BJD94_09855 PF00237 Ribosomal protein L22p/L17e BJD94_09860 PF00203 Ribosomal protein S19 BJD94_09865 PF00181 Ribosomal Proteins L2, RNA binding domain BJD94_09865 PF03947 Ribosomal Proteins L2, C-terminal domain BJD94_09870 PF00276 Ribosomal protein L23 BJD94_09875 PF00573 Ribosomal protein L4/L1 family BJD94_09880 PF00297 Ribosomal protein L3 BJD94_09885 PF00338 Ribosomal protein S10p/S20e BJD94_09905 PF13402 Peptidase M60, enhancin and enhancin-like BJD94_09905 PF13322 Domain of unknown function (DUF4092) BJD94_09905 PF17291 N-terminal domain of M60-like peptidases BJD94_09910 PF00753 Metallo-beta-lactamase superfamily BJD94_09910 PF10996 Beta-Casp domain BJD94_09910 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BJD94_09925 PF00483 Nucleotidyl transferase BJD94_09930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD94_09930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD94_09930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD94_09935 PF00953 Glycosyl transferase family 4 BJD94_09940 PF01238 Phosphomannose isomerase type I BJD94_09945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD94_09945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD94_09945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD94_09945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD94_09950 PF00483 Nucleotidyl transferase BJD94_09950 PF01050 Mannose-6-phosphate isomerase BJD94_09955 PF13439 Glycosyltransferase Family 4 BJD94_09955 PF00534 Glycosyl transferases group 1 BJD94_10000 PF13614 AAA domain BJD94_10000 PF13807 G-rich domain on putative tyrosine kinase BJD94_10000 PF02706 Chain length determinant protein BJD94_10005 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD94_10015 PF02563 Polysaccharide biosynthesis/export protein BJD94_10015 PF10531 SLBB domain BJD94_10015 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BJD94_10030 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF BJD94_10040 PF06082 Exopolysaccharide biosynthesis protein YbjH BJD94_10045 PF01370 NAD dependent epimerase/dehydratase family BJD94_10050 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD94_10055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD94_10060 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BJD94_10080 PF02348 Cytidylyltransferase BJD94_10090 PF00483 Nucleotidyl transferase BJD94_10100 PF08666 SAF domain BJD94_10100 PF03102 NeuB family BJD94_10105 PF02350 UDP-N-acetylglucosamine 2-epimerase BJD94_10110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD94_10115 PF02719 Polysaccharide biosynthesis protein BJD94_10125 PF00535 Glycosyl transferase family 2 BJD94_10125 PF02709 N-terminal domain of galactosyltransferase BJD94_10130 PF00535 Glycosyl transferase family 2 BJD94_10145 PF00793 DAHP synthetase I family BJD94_10150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD94_10155 PF00483 Nucleotidyl transferase BJD94_10160 PF16363 GDP-mannose 4,6 dehydratase BJD94_10165 PF11893 Domain of unknown function (DUF3413) BJD94_10165 PF00884 Sulfatase BJD94_10175 PF01219 Prokaryotic diacylglycerol kinase BJD94_10180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD94_10185 PF00535 Glycosyl transferase family 2 BJD94_10190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD94_10205 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD94_10205 PF06827 Zinc finger found in FPG and IleRS BJD94_10205 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD94_10215 PF00471 Ribosomal protein L33 BJD94_10220 PF00830 Ribosomal L28 family BJD94_10225 PF04002 RadC-like JAB domain BJD94_10230 PF00672 HAMP domain BJD94_10230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_10230 PF02743 Cache domain BJD94_10235 PF02441 Flavoprotein BJD94_10235 PF04127 DNA / pantothenate metabolism flavoprotein BJD94_10240 PF00440 Bacterial regulatory proteins, tetR family BJD94_10245 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD94_10250 PF00156 Phosphoribosyl transferase domain BJD94_10255 PF03725 3' exoribonuclease family, domain 2 BJD94_10255 PF01138 3' exoribonuclease family, domain 1 BJD94_10260 PF08340 Domain of unknown function (DUF1732) BJD94_10260 PF03755 YicC-like family, N-terminal region BJD94_10270 PF13411 MerR HTH family regulatory protein BJD94_10275 PF07517 SecA DEAD-like domain BJD94_10275 PF01043 SecA preprotein cross-linking domain BJD94_10275 PF02810 SEC-C motif BJD94_10275 PF07516 SecA Wing and Scaffold domain BJD94_10300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_10305 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_10305 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_10310 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_10315 PF00593 TonB dependent receptor BJD94_10315 PF07715 TonB-dependent Receptor Plug Domain BJD94_10325 PF01618 MotA/TolQ/ExbB proton channel family BJD94_10330 PF01618 MotA/TolQ/ExbB proton channel family BJD94_10335 PF02472 Biopolymer transport protein ExbD/TolR BJD94_10350 PF00625 Guanylate kinase BJD94_10360 PF13291 ACT domain BJD94_10360 PF02824 TGS domain BJD94_10360 PF04607 Region found in RelA / SpoT proteins BJD94_10365 PF00588 SpoU rRNA Methylase family BJD94_10365 PF12105 SpoU, rRNA methylase, C-terminal BJD94_10370 PF17191 RecG wedge domain BJD94_10370 PF00271 Helicase conserved C-terminal domain BJD94_10370 PF00270 DEAD/DEAH box helicase BJD94_10375 PF00860 Permease family BJD94_10380 PF00512 His Kinase A (phospho-acceptor) domain BJD94_10380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_10380 PF00672 HAMP domain BJD94_10385 PF00486 Transcriptional regulatory protein, C terminal BJD94_10385 PF00072 Response regulator receiver domain BJD94_10390 PF03449 Transcription elongation factor, N-terminal BJD94_10390 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD94_10395 PF09371 Tex-like protein N-terminal domain BJD94_10395 PF00575 S1 RNA binding domain BJD94_10395 PF17674 HHH domain BJD94_10395 PF16921 Tex protein YqgF-like domain BJD94_10405 PF00561 alpha/beta hydrolase fold BJD94_10415 PF01106 NifU-like domain BJD94_10415 PF01521 Iron-sulphur cluster biosynthesis BJD94_10420 PF00293 NUDIX domain BJD94_10425 PF00459 Inositol monophosphatase family BJD94_10430 PF01203 Type II secretion system (T2SS), protein N BJD94_10435 PF04612 Type II secretion system (T2SS), protein M BJD94_10440 PF12693 GspL periplasmic domain BJD94_10440 PF05134 Type II secretion system (T2SS), protein L BJD94_10445 PF03934 Type II secretion system (T2SS), protein K BJD94_10450 PF11612 Type II secretion system (T2SS), protein J BJD94_10450 PF07963 Prokaryotic N-terminal methylation motif BJD94_10455 PF02501 Type II secretion system (T2SS), protein I BJD94_10455 PF07963 Prokaryotic N-terminal methylation motif BJD94_10460 PF12019 Type II transport protein GspH BJD94_10465 PF07963 Prokaryotic N-terminal methylation motif BJD94_10465 PF08334 Type II secretion system (T2SS), protein G BJD94_10470 PF00482 Type II secretion system (T2SS), protein F BJD94_10475 PF00437 Type II/IV secretion system protein BJD94_10485 PF11356 Type II secretion system protein C BJD94_10490 PF01479 S4 domain BJD94_10495 PF01430 Hsp33 protein BJD94_10500 PF01293 Phosphoenolpyruvate carboxykinase BJD94_10510 PF09500 Putative thioesterase (yiiD_Cterm) BJD94_10510 PF00583 Acetyltransferase (GNAT) family BJD94_10515 PF02580 D-Tyr-tRNA(Tyr) deacylase BJD94_10520 PF03631 Virulence factor BrkB BJD94_10530 PF03668 P-loop ATPase protein family BJD94_10540 PF00120 Glutamine synthetase, catalytic domain BJD94_10540 PF03951 Glutamine synthetase, beta-Grasp domain BJD94_10550 PF00512 His Kinase A (phospho-acceptor) domain BJD94_10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_10550 PF00989 PAS fold BJD94_10555 PF02954 Bacterial regulatory protein, Fis family BJD94_10555 PF00072 Response regulator receiver domain BJD94_10555 PF00158 Sigma-54 interaction domain BJD94_10560 PF03707 Bacterial signalling protein N terminal repeat BJD94_10560 PF00563 EAL domain BJD94_10560 PF00990 Diguanylate cyclase, GGDEF domain BJD94_10560 PF13188 PAS domain BJD94_10565 PF04055 Radical SAM superfamily BJD94_10565 PF06969 HemN C-terminal domain BJD94_10570 PF10675 Protein of unknown function (DUF2489) BJD94_10575 PF04220 Der GTPase activator (YihI) BJD94_10585 PF00034 Cytochrome c BJD94_10590 PF01926 50S ribosome-binding GTPase BJD94_10595 PF01612 3'-5' exonuclease BJD94_10595 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD94_10595 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD94_10595 PF00476 DNA polymerase family A BJD94_10600 PF00490 Delta-aminolevulinic acid dehydratase BJD94_10605 PF01026 TatD related DNase BJD94_10610 PF00902 Sec-independent protein translocase protein (TatC) BJD94_10615 PF02416 mttA/Hcf106 family BJD94_10620 PF02416 mttA/Hcf106 family BJD94_10625 PF03109 ABC1 family BJD94_10630 PF02036 SCP-2 sterol transfer family BJD94_10635 PF01209 ubiE/COQ5 methyltransferase family BJD94_10640 PF02646 RmuC family BJD94_10705 PF00175 Oxidoreductase NAD-binding domain BJD94_10710 PF00970 Oxidoreductase FAD-binding domain BJD94_10710 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_10710 PF00175 Oxidoreductase NAD-binding domain BJD94_10715 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BJD94_10725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD94_10725 PF07498 Rho termination factor, N-terminal domain BJD94_10725 PF07497 Rho termination factor, RNA-binding domain BJD94_10730 PF00085 Thioredoxin BJD94_10735 PF00271 Helicase conserved C-terminal domain BJD94_10735 PF00270 DEAD/DEAH box helicase BJD94_10740 PF02541 Ppx/GppA phosphatase family BJD94_10745 PF02592 Putative vitamin uptake transporter BJD94_10755 PF00271 Helicase conserved C-terminal domain BJD94_10755 PF00570 HRDC domain BJD94_10755 PF09382 RQC domain BJD94_10755 PF00270 DEAD/DEAH box helicase BJD94_10755 PF16124 RecQ zinc-binding BJD94_10760 PF00892 EamA-like transporter family BJD94_10770 PF01810 LysE type translocator BJD94_10775 PF13361 UvrD-like helicase C-terminal domain BJD94_10775 PF00580 UvrD/REP helicase N-terminal domain BJD94_10785 PF05114 Protein of unknown function (DUF692) BJD94_10805 PF07690 Major Facilitator Superfamily BJD94_10810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_10810 PF03466 LysR substrate binding domain BJD94_10815 PF01321 Creatinase/Prolidase N-terminal domain BJD94_10815 PF00557 Metallopeptidase family M24 BJD94_10815 PF01321 Creatinase/Prolidase N-terminal domain BJD94_10815 PF00557 Metallopeptidase family M24 BJD94_10820 PF04055 Radical SAM superfamily BJD94_10820 PF06968 Biotin and Thiamin Synthesis associated domain BJD94_10825 PF05690 Thiazole biosynthesis protein ThiG BJD94_10835 PF00899 ThiF family BJD94_10840 PF02581 Thiamine monophosphate synthase BJD94_10845 PF01964 Radical SAM ThiC family BJD94_10845 PF13667 ThiC-associated domain BJD94_10850 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BJD94_10855 PF07732 Multicopper oxidase BJD94_10855 PF07731 Multicopper oxidase BJD94_10855 PF00394 Multicopper oxidase BJD94_10890 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_10895 PF07369 Protein of unknown function (DUF1488) BJD94_10900 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BJD94_10900 PF01488 Shikimate / quinate 5-dehydrogenase BJD94_10900 PF08501 Shikimate dehydrogenase substrate binding domain BJD94_10905 PF01218 Coproporphyrinogen III oxidase BJD94_10915 PF00731 AIR carboxylase BJD94_10920 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BJD94_10920 PF02222 ATP-grasp domain BJD94_10925 PF01396 Topoisomerase DNA binding C4 zinc finger BJD94_10930 PF04361 Protein of unknown function (DUF494) BJD94_10935 PF17782 DprA winged helix domain BJD94_10935 PF02481 DNA recombination-mediator protein A BJD94_10945 PF01327 Polypeptide deformylase BJD94_10950 PF00551 Formyl transferase BJD94_10950 PF02911 Formyl transferase, C-terminal domain BJD94_10955 PF01029 NusB family BJD94_10955 PF01189 16S rRNA methyltransferase RsmB/F BJD94_10960 PF02254 TrkA-N domain BJD94_10960 PF02080 TrkA-C domain BJD94_10965 PF02386 Cation transport protein BJD94_10970 PF03006 Haemolysin-III related BJD94_10975 PF07070 SpoOM protein BJD94_10980 PF06288 Protein of unknown function (DUF1040) BJD94_10985 PF13746 4Fe-4S dicluster domain BJD94_10985 PF12801 4Fe-4S binding domain BJD94_10985 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BJD94_10990 PF01636 Phosphotransferase enzyme family BJD94_10995 PF01323 DSBA-like thioredoxin domain BJD94_11000 PF01553 Acyltransferase BJD94_11010 PF01078 Magnesium chelatase, subunit ChlI BJD94_11010 PF13335 Magnesium chelatase, subunit ChlI C-terminal BJD94_11015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD94_11015 PF00205 Thiamine pyrophosphate enzyme, central domain BJD94_11015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD94_11025 PF01063 Amino-transferase class IV BJD94_11030 PF00920 Dehydratase family BJD94_11035 PF00291 Pyridoxal-phosphate dependent enzyme BJD94_11035 PF00585 C-terminal regulatory domain of Threonine dehydratase BJD94_11040 PF03466 LysR substrate binding domain BJD94_11040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_11045 PF07690 Major Facilitator Superfamily BJD94_11050 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_11055 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_11060 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_11060 PF12804 MobA-like NTP transferase domain BJD94_11065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BJD94_11065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BJD94_11070 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD94_11070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD94_11075 PF00231 ATP synthase BJD94_11080 PF00306 ATP synthase alpha/beta chain, C terminal domain BJD94_11080 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD94_11080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD94_11085 PF00213 ATP synthase delta (OSCP) subunit BJD94_11090 PF00430 ATP synthase B/B' CF(0) BJD94_11095 PF00137 ATP synthase subunit C BJD94_11100 PF00119 ATP synthase A chain BJD94_11105 PF03899 ATP synthase I chain BJD94_11110 PF02195 ParB-like nuclease domain BJD94_11110 PF17762 HTH domain found in ParB protein BJD94_11120 PF02527 rRNA small subunit methyltransferase G BJD94_11125 PF13932 GidA associated domain BJD94_11125 PF01134 Glucose inhibited division protein A BJD94_11130 PF00258 Flavodoxin BJD94_11135 PF10396 GTP-binding protein TrmE N-terminus BJD94_11135 PF12631 MnmE helical domain BJD94_11135 PF01926 50S ribosome-binding GTPase BJD94_11140 PF02096 60Kd inner membrane protein BJD94_11140 PF14849 YidC periplasmic domain BJD94_11145 PF00825 Ribonuclease P BJD94_11150 PF00468 Ribosomal protein L34 BJD94_11155 PF00005 ABC transporter BJD94_11160 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_11165 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_11170 PF00308 Bacterial dnaA protein BJD94_11170 PF08299 Bacterial dnaA protein helix-turn-helix BJD94_11170 PF11638 DnaA N-terminal domain BJD94_11175 PF00712 DNA polymerase III beta subunit, N-terminal domain BJD94_11175 PF02767 DNA polymerase III beta subunit, central domain BJD94_11175 PF02768 DNA polymerase III beta subunit, C-terminal domain BJD94_11180 PF02463 RecF/RecN/SMC N terminal domain BJD94_11185 PF01751 Toprim domain BJD94_11185 PF00204 DNA gyrase B BJD94_11185 PF00986 DNA gyrase B subunit, carboxyl terminus BJD94_11185 PF18053 DNA gyrase B subunit insert domain BJD94_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_11190 PF00011 Hsp20/alpha crystallin family BJD94_11195 PF00563 EAL domain BJD94_11195 PF03707 Bacterial signalling protein N terminal repeat BJD94_11195 PF00990 Diguanylate cyclase, GGDEF domain BJD94_11200 PF00155 Aminotransferase class I and II BJD94_11210 PF02092 Glycyl-tRNA synthetase beta subunit BJD94_11210 PF05746 DALR anticodon binding domain BJD94_11215 PF02091 Glycyl-tRNA synthetase alpha subunit BJD94_11230 PF01206 Sulfurtransferase TusA BJD94_11240 PF03466 LysR substrate binding domain BJD94_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_11245 PF08240 Alcohol dehydrogenase GroES-like domain BJD94_11245 PF00107 Zinc-binding dehydrogenase BJD94_11250 PF00108 Thiolase, N-terminal domain BJD94_11250 PF02803 Thiolase, C-terminal domain BJD94_11255 PF00378 Enoyl-CoA hydratase/isomerase BJD94_11255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD94_11255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD94_11260 PF09186 Domain of unknown function (DUF1949) BJD94_11260 PF01205 Uncharacterized protein family UPF0029 BJD94_11265 PF02386 Cation transport protein BJD94_11270 PF12724 Flavodoxin domain BJD94_11315 PF03466 LysR substrate binding domain BJD94_11315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_11320 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BJD94_11320 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BJD94_11325 PF04380 Membrane fusogenic activity BJD94_11330 PF00873 AcrB/AcrD/AcrF family BJD94_11335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_11340 PF00440 Bacterial regulatory proteins, tetR family BJD94_11345 PF13361 UvrD-like helicase C-terminal domain BJD94_11345 PF00580 UvrD/REP helicase N-terminal domain BJD94_11350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BJD94_11380 PF00005 ABC transporter BJD94_11380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_11385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_11395 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_11395 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_11430 PF03793 PASTA domain BJD94_11430 PF00069 Protein kinase domain BJD94_11445 PF00356 Bacterial regulatory proteins, lacI family BJD94_11445 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BJD94_11450 PF00920 Dehydratase family BJD94_11455 PF01202 Shikimate kinase BJD94_11460 PF02447 GntP family permease BJD94_11465 PF01081 KDPG and KHG aldolase BJD94_11480 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_11480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_11485 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BJD94_11490 PF01432 Peptidase family M3 BJD94_11495 PF01037 Lrp/AsnC ligand binding domain BJD94_11500 PF08448 PAS fold BJD94_11500 PF00990 Diguanylate cyclase, GGDEF domain BJD94_11500 PF00563 EAL domain BJD94_11505 PF04445 Putative SAM-dependent methyltransferase BJD94_11515 PF00892 EamA-like transporter family BJD94_11520 PF00582 Universal stress protein family BJD94_11525 PF00210 Ferritin-like domain BJD94_11530 PF10625 Universal stress protein B (UspB) BJD94_11545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BJD94_11550 PF02602 Uroporphyrinogen-III synthase HemD BJD94_11555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BJD94_11555 PF03900 Porphobilinogen deaminase, C-terminal domain BJD94_11560 PF12633 Adenylate cyclase NT domain BJD94_11560 PF01295 Adenylate cyclase, class-I BJD94_11565 PF01491 Frataxin-like domain BJD94_11575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BJD94_11575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD94_11580 PF01678 Diaminopimelate epimerase BJD94_11590 PF00589 Phage integrase family BJD94_11590 PF02899 Phage integrase, N-terminal SAM-like domain BJD94_11595 PF13419 Haloacid dehalogenase-like hydrolase BJD94_11600 PF08495 FIST N domain BJD94_11600 PF00990 Diguanylate cyclase, GGDEF domain BJD94_11600 PF10442 FIST C domain BJD94_11600 PF00563 EAL domain BJD94_11625 PF12146 Serine aminopeptidase, S33 BJD94_11630 PF01810 LysE type translocator BJD94_11635 PF00563 EAL domain BJD94_11635 PF08668 HDOD domain BJD94_11640 PF01022 Bacterial regulatory protein, arsR family BJD94_11645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD94_11645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD94_11685 PF01914 MarC family integral membrane protein BJD94_11700 PF00448 SRP54-type protein, GTPase domain BJD94_11700 PF02881 SRP54-type protein, helical bundle domain BJD94_11705 PF00005 ABC transporter BJD94_11710 PF18075 FtsX extracellular domain BJD94_11715 PF04542 Sigma-70 region 2 BJD94_11715 PF04545 Sigma-70, region 4 BJD94_11715 PF00140 Sigma-70 factor, region 1.2 BJD94_11720 PF00581 Rhodanese-like domain BJD94_11725 PF01694 Rhomboid family BJD94_11725 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BJD94_11730 PF03748 Flagellar basal body-associated protein FliL BJD94_11735 PF04345 Chorismate lyase BJD94_11740 PF01040 UbiA prenyltransferase family BJD94_11745 PF01553 Acyltransferase BJD94_11750 PF00717 Peptidase S24-like BJD94_11750 PF01726 LexA DNA binding domain BJD94_11760 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_11760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_11765 PF00440 Bacterial regulatory proteins, tetR family BJD94_11775 PF05958 tRNA (Uracil-5-)-methyltransferase BJD94_11780 PF07715 TonB-dependent Receptor Plug Domain BJD94_11780 PF00593 TonB dependent receptor BJD94_11790 PF01177 Asp/Glu/Hydantoin racemase BJD94_11870 PF13091 PLD-like domain BJD94_11880 PF01565 FAD binding domain BJD94_11880 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BJD94_11885 PF02237 Biotin protein ligase C terminal domain BJD94_11885 PF08279 HTH domain BJD94_11885 PF03099 Biotin/lipoate A/B protein ligase family BJD94_11890 PF00485 Phosphoribulokinase / Uridine kinase family BJD94_11920 PF00009 Elongation factor Tu GTP binding domain BJD94_11920 PF03143 Elongation factor Tu C-terminal domain BJD94_11920 PF03144 Elongation factor Tu domain 2 BJD94_11925 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BJD94_11930 PF02357 Transcription termination factor nusG BJD94_11930 PF00467 KOW motif BJD94_11935 PF03946 Ribosomal protein L11, N-terminal domain BJD94_11935 PF00298 Ribosomal protein L11, RNA binding domain BJD94_11940 PF00687 Ribosomal protein L1p/L10e family BJD94_11945 PF00466 Ribosomal protein L10 BJD94_11950 PF16320 Ribosomal protein L7/L12 dimerisation domain BJD94_11950 PF00542 Ribosomal protein L7/L12 C-terminal domain BJD94_11955 PF04563 RNA polymerase beta subunit BJD94_11955 PF04560 RNA polymerase Rpb2, domain 7 BJD94_11955 PF00562 RNA polymerase Rpb2, domain 6 BJD94_11955 PF04561 RNA polymerase Rpb2, domain 2 BJD94_11955 PF04565 RNA polymerase Rpb2, domain 3 BJD94_11955 PF10385 RNA polymerase beta subunit external 1 domain BJD94_11960 PF04997 RNA polymerase Rpb1, domain 1 BJD94_11960 PF00623 RNA polymerase Rpb1, domain 2 BJD94_11960 PF04983 RNA polymerase Rpb1, domain 3 BJD94_11960 PF04998 RNA polymerase Rpb1, domain 5 BJD94_11960 PF05000 RNA polymerase Rpb1, domain 4 BJD94_11965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BJD94_11970 PF00293 NUDIX domain BJD94_11970 PF09297 NADH pyrophosphatase zinc ribbon domain BJD94_11985 PF01208 Uroporphyrinogen decarboxylase (URO-D) BJD94_11990 PF03167 Uracil DNA glycosylase superfamily BJD94_12000 PF04222 Protein of unknown function (DUF416) BJD94_12005 PF01595 Cyclin M transmembrane N-terminal domain BJD94_12005 PF00571 CBS domain BJD94_12010 PF00216 Bacterial DNA-binding protein BJD94_12020 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BJD94_12020 PF02843 Phosphoribosylglycinamide synthetase, C domain BJD94_12020 PF02844 Phosphoribosylglycinamide synthetase, N domain BJD94_12025 PF01808 AICARFT/IMPCHase bienzyme BJD94_12025 PF02142 MGS-like domain BJD94_12030 PF13411 MerR HTH family regulatory protein BJD94_12035 PF17200 Single Cache domain 2 BJD94_12035 PF00672 HAMP domain BJD94_12035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_12040 PF02954 Bacterial regulatory protein, Fis family BJD94_12045 PF01207 Dihydrouridine synthase (Dus) BJD94_12055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD94_12055 PF00289 Biotin carboxylase, N-terminal domain BJD94_12055 PF02785 Biotin carboxylase C-terminal domain BJD94_12060 PF00364 Biotin-requiring enzyme BJD94_12065 PF01220 Dehydroquinase class II BJD94_12070 PF00501 AMP-binding enzyme BJD94_12070 PF13193 AMP-binding enzyme C-terminal domain BJD94_12070 PF16177 Acetyl-coenzyme A synthetase N-terminus BJD94_12085 PF12832 MFS_1 like family BJD94_12090 PF01627 Hpt domain BJD94_12090 PF00512 His Kinase A (phospho-acceptor) domain BJD94_12090 PF00672 HAMP domain BJD94_12090 PF00072 Response regulator receiver domain BJD94_12090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_12105 PF00474 Sodium:solute symporter family BJD94_12115 PF01914 MarC family integral membrane protein BJD94_12120 PF00072 Response regulator receiver domain BJD94_12120 PF00196 Bacterial regulatory proteins, luxR family BJD94_12125 PF11412 Disulphide bond corrector protein DsbC BJD94_12125 PF02683 Cytochrome C biogenesis protein transmembrane region BJD94_12130 PF03605 Anaerobic c4-dicarboxylate membrane transporter BJD94_12135 PF10415 Fumarase C C-terminus BJD94_12135 PF00206 Lyase BJD94_12140 PF04186 FxsA cytoplasmic membrane protein BJD94_12145 PF00588 SpoU rRNA Methylase family BJD94_12150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD94_12150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD94_12155 PF16527 Two-component sensor protein CpxA, periplasmic domain BJD94_12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_12155 PF00672 HAMP domain BJD94_12155 PF00512 His Kinase A (phospho-acceptor) domain BJD94_12160 PF00486 Transcriptional regulatory protein, C terminal BJD94_12160 PF00072 Response regulator receiver domain BJD94_12165 PF07813 LTXXQ motif family protein BJD94_12170 PF16916 Dimerisation domain of Zinc Transporter BJD94_12170 PF01545 Cation efflux family BJD94_12175 PF00365 Phosphofructokinase BJD94_12180 PF01554 MatE BJD94_12185 PF00166 Chaperonin 10 Kd subunit BJD94_12190 PF00118 TCP-1/cpn60 chaperonin family BJD94_12200 PF02308 MgtC family BJD94_12205 PF04055 Radical SAM superfamily BJD94_12210 PF01132 Elongation factor P (EF-P) OB domain BJD94_12210 PF08207 Elongation factor P (EF-P) KOW-like domain BJD94_12210 PF09285 Elongation factor P, C-terminal BJD94_12220 PF02313 Fumarate reductase subunit D BJD94_12225 PF02300 Fumarate reductase subunit C BJD94_12230 PF13085 2Fe-2S iron-sulfur cluster binding domain BJD94_12230 PF13183 4Fe-4S dicluster domain BJD94_12240 PF00152 tRNA synthetases class II (D, K and N) BJD94_12250 PF00440 Bacterial regulatory proteins, tetR family BJD94_12250 PF08360 QacR-like protein, C-terminal region BJD94_12260 PF01551 Peptidase family M23 BJD94_12265 PF06426 Serine acetyltransferase, N-terminal BJD94_12265 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_12270 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BJD94_12270 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BJD94_12275 PF02556 Preprotein translocase subunit SecB BJD94_12280 PF00581 Rhodanese-like domain BJD94_12290 PF01676 Metalloenzyme superfamily BJD94_12290 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BJD94_12300 PF00939 Sodium:sulfate symporter transmembrane region BJD94_12305 PF02666 Phosphatidylserine decarboxylase BJD94_12315 PF00929 Exonuclease BJD94_12375 PF08331 Domain of unknown function (DUF1730) BJD94_12380 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BJD94_12385 PF01520 N-acetylmuramoyl-L-alanine amidase BJD94_12390 PF08676 MutL C terminal dimerisation domain BJD94_12390 PF01119 DNA mismatch repair protein, C-terminal domain BJD94_12400 PF17209 Hfq protein BJD94_12405 PF16360 GTP-binding GTPase Middle Region BJD94_12405 PF01926 50S ribosome-binding GTPase BJD94_12405 PF13167 GTP-binding GTPase N-terminal BJD94_12410 PF12221 Bacterial membrane protein N terminal BJD94_12410 PF01145 SPFH domain / Band 7 family BJD94_12415 PF01145 SPFH domain / Band 7 family BJD94_12420 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BJD94_12425 PF00709 Adenylosuccinate synthetase BJD94_12430 PF08238 Sel1 repeat BJD94_12435 PF00175 Oxidoreductase NAD-binding domain BJD94_12435 PF00042 Globin BJD94_12435 PF00970 Oxidoreductase FAD-binding domain BJD94_12440 PF02082 Transcriptional regulator BJD94_12445 PF01979 Amidohydrolase family BJD94_12450 PF17876 Cold shock domain BJD94_12450 PF08206 Ribonuclease B OB domain BJD94_12450 PF00773 RNB domain BJD94_12450 PF00575 S1 RNA binding domain BJD94_12450 PF08461 Ribonuclease R winged-helix domain BJD94_12455 PF00588 SpoU rRNA Methylase family BJD94_12455 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD94_12460 PF13419 Haloacid dehalogenase-like hydrolase BJD94_12465 PF00579 tRNA synthetases class I (W and Y) BJD94_12480 PF00117 Glutamine amidotransferase class-I BJD94_12485 PF00202 Aminotransferase class-III BJD94_12490 PF04958 Arginine N-succinyltransferase beta subunit BJD94_12495 PF00171 Aldehyde dehydrogenase family BJD94_12505 PF13545 Crp-like helix-turn-helix domain BJD94_12505 PF00027 Cyclic nucleotide-binding domain BJD94_12510 PF00485 Phosphoribulokinase / Uridine kinase family BJD94_12515 PF06794 Uncharacterised protein family (UPF0270) BJD94_12520 PF00561 alpha/beta hydrolase fold BJD94_12530 PF12848 ABC transporter BJD94_12530 PF00005 ABC transporter BJD94_12535 PF02525 Flavodoxin-like fold BJD94_12540 PF02254 TrkA-N domain BJD94_12540 PF00999 Sodium/hydrogen exchanger family BJD94_12550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_12555 PF01112 Asparaginase BJD94_12560 PF04102 SlyX BJD94_12570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_12570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD94_12575 PF13309 HTH domain BJD94_12575 PF08348 YheO-like PAS domain BJD94_12580 PF02635 DsrE/DsrF-like family BJD94_12585 PF02635 DsrE/DsrF-like family BJD94_12595 PF00164 Ribosomal protein S12/S23 BJD94_12600 PF00177 Ribosomal protein S7p/S5e BJD94_12615 PF04324 BFD-like [2Fe-2S] binding domain BJD94_12620 PF00210 Ferritin-like domain BJD94_12625 PF16363 GDP-mannose 4,6 dehydratase BJD94_12630 PF00121 Triosephosphate isomerase BJD94_12655 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BJD94_12660 PF06005 Cell division protein ZapB BJD94_12665 PF03737 Aldolase/RraA BJD94_12670 PF01040 UbiA prenyltransferase family BJD94_12675 PF10431 C-terminal, D2-small domain, of ClpB protein BJD94_12675 PF07724 AAA domain (Cdc48 subfamily) BJD94_12675 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_12690 PF00356 Bacterial regulatory proteins, lacI family BJD94_12695 PF00271 Helicase conserved C-terminal domain BJD94_12695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BJD94_12695 PF17764 3′ DNA-binding domain (3′BD) BJD94_12695 PF18074 Primosomal protein N C-terminal domain BJD94_12695 PF00270 DEAD/DEAH box helicase BJD94_12700 PF01197 Ribosomal protein L31 BJD94_12705 PF03949 Malic enzyme, NAD binding domain BJD94_12705 PF00390 Malic enzyme, N-terminal domain BJD94_12710 PF01340 Met Apo-repressor, MetJ BJD94_12715 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD94_12720 PF03447 Homoserine dehydrogenase, NAD binding domain BJD94_12720 PF00742 Homoserine dehydrogenase BJD94_12720 PF00696 Amino acid kinase family BJD94_12725 PF02219 Methylenetetrahydrofolate reductase BJD94_12735 PF00311 Phosphoenolpyruvate carboxylase BJD94_12740 PF01546 Peptidase family M20/M25/M40 BJD94_12740 PF07687 Peptidase dimerisation domain BJD94_12745 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD94_12745 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD94_12750 PF00696 Amino acid kinase family BJD94_12755 PF00764 Arginosuccinate synthase BJD94_12760 PF00583 Acetyltransferase (GNAT) family BJD94_12760 PF14698 Argininosuccinate lyase C-terminal BJD94_12760 PF00206 Lyase BJD94_12770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_12770 PF03466 LysR substrate binding domain BJD94_12800 PF11741 AMIN domain BJD94_12800 PF00263 Bacterial type II and III secretion system protein BJD94_12800 PF07660 Secretin and TonB N terminus short domain BJD94_12800 PF03958 Bacterial type II/III secretion system short domain BJD94_12805 PF01202 Shikimate kinase BJD94_12810 PF01761 3-dehydroquinate synthase BJD94_12820 PF02086 D12 class N6 adenine-specific DNA methyltransferase BJD94_12825 PF00834 Ribulose-phosphate 3 epimerase family BJD94_12830 PF01250 Ribosomal protein S6 BJD94_12835 PF00436 Single-strand binding protein family BJD94_12840 PF01084 Ribosomal protein S18 BJD94_12845 PF01281 Ribosomal protein L9, N-terminal domain BJD94_12845 PF03948 Ribosomal protein L9, C-terminal domain BJD94_12855 PF00772 DnaB-like helicase N terminal domain BJD94_12855 PF03796 DnaB-like helicase C terminal domain BJD94_12860 PF00842 Alanine racemase, C-terminal domain BJD94_12860 PF01168 Alanine racemase, N-terminal domain BJD94_12870 PF01894 Uncharacterised protein family UPF0047 BJD94_12875 PF00342 Phosphoglucose isomerase BJD94_12885 PF01475 Ferric uptake regulator family BJD94_12890 PF01207 Dihydrouridine synthase (Dus) BJD94_12910 PF00667 FAD binding domain BJD94_12910 PF00258 Flavodoxin BJD94_12910 PF00175 Oxidoreductase NAD-binding domain BJD94_12915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD94_12915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD94_12920 PF01507 Phosphoadenosine phosphosulfate reductase family BJD94_13000 PF00072 Response regulator receiver domain BJD94_13000 PF00990 Diguanylate cyclase, GGDEF domain BJD94_13005 PF00999 Sodium/hydrogen exchanger family BJD94_13010 PF02965 Vitamin B12 dependent methionine synthase, activation domain BJD94_13010 PF00809 Pterin binding enzyme BJD94_13010 PF02310 B12 binding domain BJD94_13010 PF02607 B12 binding domain BJD94_13010 PF02574 Homocysteine S-methyltransferase BJD94_13015 PF01842 ACT domain BJD94_13015 PF00696 Amino acid kinase family BJD94_13020 PF00266 Aminotransferase class-V BJD94_13030 PF17755 UvrA DNA-binding domain BJD94_13030 PF17760 UvrA interaction domain BJD94_13030 PF00005 ABC transporter BJD94_13035 PF00483 Nucleotidyl transferase BJD94_13040 PF00196 Bacterial regulatory proteins, luxR family BJD94_13045 PF00436 Single-strand binding protein family BJD94_13050 PF17157 Gammaproteobacterial periplasmic sensor domain BJD94_13050 PF00990 Diguanylate cyclase, GGDEF domain BJD94_13050 PF00563 EAL domain BJD94_13070 PF11741 AMIN domain BJD94_13070 PF07660 Secretin and TonB N terminus short domain BJD94_13070 PF03958 Bacterial type II/III secretion system short domain BJD94_13070 PF00263 Bacterial type II and III secretion system protein BJD94_13075 PF01471 Putative peptidoglycan binding domain BJD94_13075 PF13401 AAA domain BJD94_13085 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD94_13085 PF00437 Type II/IV secretion system protein BJD94_13090 PF00482 Type II secretion system (T2SS), protein F BJD94_13100 PF07963 Prokaryotic N-terminal methylation motif BJD94_13100 PF00114 Pilin (bacterial filament) BJD94_13140 PF04085 rod shape-determining protein MreC BJD94_13145 PF04093 rod shape-determining protein MreD BJD94_13150 PF02545 Maf-like protein BJD94_13155 PF00575 S1 RNA binding domain BJD94_13155 PF10150 Ribonuclease E/G family BJD94_13160 PF13116 Protein of unknown function BJD94_13160 PF13502 AsmA-like C-terminal region BJD94_13165 PF00795 Carbon-nitrogen hydrolase BJD94_13170 PF01523 Putative modulator of DNA gyrase BJD94_13175 PF13638 PIN domain BJD94_13175 PF02562 PhoH-like protein BJD94_13180 PF18339 RapA N-terminal Tudor like domain 1 BJD94_13180 PF00271 Helicase conserved C-terminal domain BJD94_13180 PF12137 RNA polymerase recycling family C-terminal BJD94_13180 PF00176 SNF2 family N-terminal domain BJD94_13180 PF18337 RapA N-terminal Tudor like domain BJD94_13185 PF00849 RNA pseudouridylate synthase BJD94_13190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD94_13190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD94_13195 PF01042 Endoribonuclease L-PSP BJD94_13200 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BJD94_13200 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BJD94_13205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD94_13205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD94_13210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD94_13210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD94_13220 PF06877 Regulator of ribonuclease activity B BJD94_13230 PF00583 Acetyltransferase (GNAT) family BJD94_13240 PF05987 Bacterial protein of unknown function (DUF898) BJD94_13250 PF10458 Valyl tRNA synthetase tRNA binding arm BJD94_13250 PF08264 Anticodon-binding domain of tRNA BJD94_13250 PF00133 tRNA synthetases class I (I, L, M and V) BJD94_13255 PF04364 DNA polymerase III chi subunit, HolC BJD94_13260 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD94_13260 PF00883 Cytosol aminopeptidase family, catalytic domain BJD94_13265 PF03739 Lipopolysaccharide export system permease LptF/LptG BJD94_13270 PF03739 Lipopolysaccharide export system permease LptF/LptG BJD94_13285 PF01522 Polysaccharide deacetylase BJD94_13290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_13295 PF02378 Phosphotransferase system, EIIC BJD94_13300 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BJD94_13305 PF11975 Family 4 glycosyl hydrolase C-terminal domain BJD94_13305 PF02056 Family 4 glycosyl hydrolase BJD94_13310 PF04794 YdjC-like protein BJD94_13315 PF00356 Bacterial regulatory proteins, lacI family BJD94_13410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_13410 PF00672 HAMP domain BJD94_13410 PF17200 Single Cache domain 2 BJD94_13430 PF01464 Transglycosylase SLT domain BJD94_13430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BJD94_13435 PF04362 Bacterial Fe(2+) trafficking BJD94_13440 PF14815 NUDIX domain BJD94_13440 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD94_13440 PF00633 Helix-hairpin-helix motif BJD94_13445 PF02390 Putative methyltransferase BJD94_13450 PF04960 Glutaminase BJD94_13455 PF04055 Radical SAM superfamily BJD94_13455 PF06969 HemN C-terminal domain BJD94_13460 PF01725 Ham1 family BJD94_13470 PF02594 Uncharacterised ACR, YggU family COG1872 BJD94_13475 PF02325 YGGT family BJD94_13480 PF14748 Pyrroline-5-carboxylate reductase dimerisation BJD94_13480 PF03807 NADP oxidoreductase coenzyme F420-dependent BJD94_13485 PF01168 Alanine racemase, N-terminal domain BJD94_13490 PF00437 Type II/IV secretion system protein BJD94_13495 PF00437 Type II/IV secretion system protein BJD94_13500 PF03652 Holliday junction resolvase BJD94_13505 PF02622 Uncharacterized ACR, COG1678 BJD94_13510 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BJD94_13510 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BJD94_13515 PF04452 RNA methyltransferase BJD94_13525 PF04231 Endonuclease I BJD94_13530 PF10263 SprT-like family BJD94_13530 PF17283 SprT-like zinc ribbon domain BJD94_13540 PF02773 S-adenosylmethionine synthetase, C-terminal domain BJD94_13540 PF00438 S-adenosylmethionine synthetase, N-terminal domain BJD94_13540 PF02772 S-adenosylmethionine synthetase, central domain BJD94_13545 PF02779 Transketolase, pyrimidine binding domain BJD94_13545 PF02780 Transketolase, C-terminal domain BJD94_13545 PF00456 Transketolase, thiamine diphosphate binding domain BJD94_13555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD94_13555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD94_13560 PF00162 Phosphoglycerate kinase BJD94_13565 PF01116 Fructose-bisphosphate aldolase class-II BJD94_13570 PF00924 Mechanosensitive ion channel BJD94_13570 PF05552 Conserved TM helix BJD94_13575 PF01810 LysE type translocator BJD94_13580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_13580 PF03466 LysR substrate binding domain BJD94_13590 PF01842 ACT domain BJD94_13590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD94_13590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD94_13595 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BJD94_13600 PF01812 5-formyltetrahydrofolate cyclo-ligase family BJD94_13610 PF05164 Cell division protein ZapA BJD94_13615 PF03695 Uncharacterised protein family (UPF0149) BJD94_13620 PF01494 FAD binding domain BJD94_13625 PF01494 FAD binding domain BJD94_13640 PF01571 Aminomethyltransferase folate-binding domain BJD94_13645 PF03937 Flavinator of succinate dehydrogenase BJD94_13655 PF00890 FAD binding domain BJD94_13655 PF02910 Fumarate reductase flavoprotein C-term BJD94_13660 PF08281 Sigma-70, region 4 BJD94_13660 PF04542 Sigma-70 region 2 BJD94_13665 PF03873 Anti sigma-E protein RseA, C-terminal domain BJD94_13665 PF03872 Anti sigma-E protein RseA, N-terminal domain BJD94_13670 PF17188 MucB/RseB C-terminal domain BJD94_13670 PF03888 MucB/RseB N-terminal domain BJD94_13680 PF03144 Elongation factor Tu domain 2 BJD94_13680 PF06421 GTP-binding protein LepA C-terminus BJD94_13680 PF00679 Elongation factor G C-terminus BJD94_13680 PF00009 Elongation factor Tu GTP binding domain BJD94_13685 PF10502 Signal peptidase, peptidase S26 BJD94_13690 PF14622 Ribonuclease-III-like BJD94_13690 PF00035 Double-stranded RNA binding motif BJD94_13695 PF01926 50S ribosome-binding GTPase BJD94_13695 PF07650 KH domain BJD94_13700 PF02565 Recombination protein O C terminal BJD94_13700 PF11967 Recombination protein O N terminal BJD94_13705 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BJD94_13710 PF01648 4'-phosphopantetheinyl transferase superfamily BJD94_13725 PF00990 Diguanylate cyclase, GGDEF domain BJD94_13725 PF00563 EAL domain BJD94_13725 PF03707 Bacterial signalling protein N terminal repeat BJD94_13730 PF01627 Hpt domain BJD94_13730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_13730 PF00512 His Kinase A (phospho-acceptor) domain BJD94_13730 PF00672 HAMP domain BJD94_13730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD94_13730 PF00072 Response regulator receiver domain BJD94_13735 PF05958 tRNA (Uracil-5-)-methyltransferase BJD94_13735 PF01938 TRAM domain BJD94_13740 PF13291 ACT domain BJD94_13740 PF04607 Region found in RelA / SpoT proteins BJD94_13740 PF02824 TGS domain BJD94_13745 PF03819 MazG nucleotide pyrophosphohydrolase domain BJD94_13750 PF00117 Glutamine amidotransferase class-I BJD94_13750 PF06418 CTP synthase N-terminus BJD94_13755 PF00113 Enolase, C-terminal TIM barrel domain BJD94_13755 PF03952 Enolase, N-terminal domain BJD94_13760 PF04977 Septum formation initiator BJD94_13765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BJD94_13770 PF02542 YgbB family BJD94_13775 PF01142 tRNA pseudouridine synthase D (TruD) BJD94_13780 PF01975 Survival protein SurE BJD94_13790 PF01476 LysM domain BJD94_13790 PF01551 Peptidase family M23 BJD94_13795 PF00140 Sigma-70 factor, region 1.2 BJD94_13795 PF04539 Sigma-70 region 3 BJD94_13795 PF04545 Sigma-70, region 4 BJD94_13795 PF04542 Sigma-70 region 2 BJD94_13800 PF05190 MutS family domain IV BJD94_13800 PF00488 MutS domain V BJD94_13800 PF05188 MutS domain II BJD94_13800 PF01624 MutS domain I BJD94_13800 PF05192 MutS domain III BJD94_13805 PF02464 Competence-damaged protein BJD94_13810 PF00154 recA bacterial DNA recombination protein BJD94_13815 PF02631 RecX family BJD94_13820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD94_13820 PF02272 DHHA1 domain BJD94_13820 PF01411 tRNA synthetases class II (A) BJD94_13825 PF00696 Amino acid kinase family BJD94_13825 PF13840 ACT domain BJD94_13825 PF01842 ACT domain BJD94_13830 PF02599 Global regulator protein family BJD94_13875 PF04277 Oxaloacetate decarboxylase, gamma chain BJD94_13880 PF00364 Biotin-requiring enzyme BJD94_13880 PF02436 Conserved carboxylase domain BJD94_13880 PF00682 HMGL-like BJD94_13885 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BJD94_13890 PF08240 Alcohol dehydrogenase GroES-like domain BJD94_13890 PF00107 Zinc-binding dehydrogenase BJD94_13895 PF09335 SNARE associated Golgi protein BJD94_13900 PF05193 Peptidase M16 inactive domain BJD94_13900 PF00675 Insulinase (Peptidase family M16) BJD94_13905 PF04262 Glutamate-cysteine ligase BJD94_13915 PF02664 S-Ribosylhomocysteinase (LuxS) BJD94_13920 PF01595 Cyclin M transmembrane N-terminal domain BJD94_13920 PF03471 Transporter associated domain BJD94_13920 PF00571 CBS domain BJD94_13925 PF01578 Cytochrome C assembly protein BJD94_13930 PF02881 SRP54-type protein, helical bundle domain BJD94_13930 PF00448 SRP54-type protein, GTPase domain BJD94_13930 PF02978 Signal peptide binding domain BJD94_13935 PF00886 Ribosomal protein S16 BJD94_13940 PF01782 RimM N-terminal domain BJD94_13940 PF05239 PRC-barrel domain BJD94_13945 PF01746 tRNA (Guanine-1)-methyltransferase BJD94_13950 PF01245 Ribosomal protein L19 BJD94_13955 PF03884 DNA gyrase inhibitor YacG BJD94_13960 PF07072 Cell division protein BJD94_13965 PF01121 Dephospho-CoA kinase BJD94_13970 PF06750 Bacterial Peptidase A24 N-terminal domain BJD94_13970 PF01478 Type IV leader peptidase family BJD94_13975 PF00482 Type II secretion system (T2SS), protein F BJD94_13980 PF00437 Type II/IV secretion system protein BJD94_13980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD94_13985 PF07963 Prokaryotic N-terminal methylation motif BJD94_13985 PF00114 Pilin (bacterial filament) BJD94_13990 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BJD94_13990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BJD94_13995 PF01510 N-acetylmuramoyl-L-alanine amidase BJD94_14000 PF07729 FCD domain BJD94_14000 PF00392 Bacterial regulatory proteins, gntR family BJD94_14005 PF00456 Transketolase, thiamine diphosphate binding domain BJD94_14005 PF17831 Pyruvate dehydrogenase E1 component middle domain BJD94_14010 PF00364 Biotin-requiring enzyme BJD94_14010 PF02817 e3 binding domain BJD94_14010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD94_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_14015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_14020 PF00440 Bacterial regulatory proteins, tetR family BJD94_14025 PF00156 Phosphoribosyl transferase domain BJD94_14030 PF00484 Carbonic anhydrase BJD94_14035 PF01740 STAS domain BJD94_14035 PF00916 Sulfate permease family BJD94_14040 PF00005 ABC transporter BJD94_14045 PF01061 ABC-2 type transporter BJD94_14050 PF02569 Pantoate-beta-alanine ligase BJD94_14055 PF02548 Ketopantoate hydroxymethyltransferase BJD94_14060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD94_14065 PF12626 Polymerase A arginine-rich C-terminus BJD94_14065 PF01743 Poly A polymerase head domain BJD94_14065 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD94_14070 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD94_14075 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD94_14080 PF17746 SfsA N-terminal OB domain BJD94_14080 PF03749 Sugar fermentation stimulation protein RE domain BJD94_14085 PF00271 Helicase conserved C-terminal domain BJD94_14085 PF00270 DEAD/DEAH box helicase BJD94_14085 PF04408 Helicase associated domain (HA2) BJD94_14085 PF08482 ATP-dependent helicase C-terminal BJD94_14090 PF14814 Bifunctional transglycosylase second domain BJD94_14090 PF00905 Penicillin binding protein transpeptidase domain BJD94_14090 PF00912 Transglycosylase BJD94_14095 PF01734 Patatin-like phospholipase BJD94_14105 PF02595 Glycerate kinase family BJD94_14110 PF02447 GntP family permease BJD94_14115 PF17853 GGDEF-like domain BJD94_14115 PF13556 PucR C-terminal helix-turn-helix domain BJD94_14115 PF05651 Putative sugar diacid recognition BJD94_14120 PF06062 Uncharacterised protein family (UPF0231) BJD94_14125 PF00543 Nitrogen regulatory protein P-II BJD94_14130 PF00909 Ammonium Transporter Family BJD94_14135 PF13416 Bacterial extracellular solute-binding protein BJD94_14145 PF00005 ABC transporter BJD94_14145 PF08402 TOBE domain BJD94_14150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD94_14150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD94_14150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD94_14155 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BJD94_14155 PF06165 Glycosyltransferase family 36 BJD94_14160 PF00728 Glycosyl hydrolase family 20, catalytic domain BJD94_14160 PF02838 Glycosyl hydrolase family 20, domain 2 BJD94_14165 PF01869 BadF/BadG/BcrA/BcrD ATPase family BJD94_14175 PF00005 ABC transporter BJD94_14175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_14180 PF00005 ABC transporter BJD94_14180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_14185 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_14185 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_14190 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_14195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_14200 PF09308 LuxQ, periplasmic BJD94_14200 PF00512 His Kinase A (phospho-acceptor) domain BJD94_14200 PF00072 Response regulator receiver domain BJD94_14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_14205 PF08468 Methyltransferase small domain N-terminal BJD94_14205 PF05175 Methyltransferase small domain BJD94_14210 PF01594 AI-2E family transporter BJD94_14215 PF00202 Aminotransferase class-III BJD94_14220 PF01521 Iron-sulphur cluster biosynthesis BJD94_14225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_14230 PF00873 AcrB/AcrD/AcrF family BJD94_14235 PF01551 Peptidase family M23 BJD94_14235 PF04225 Opacity-associated protein A LysM-like domain BJD94_14240 PF00579 tRNA synthetases class I (W and Y) BJD94_14245 PF04304 Protein of unknown function (DUF454) BJD94_14250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BJD94_14255 PF13006 Insertion element 4 transposase N-terminal BJD94_14255 PF01609 Transposase DDE domain BJD94_14260 PF13609 Gram-negative porin BJD94_14270 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD94_14270 PF03449 Transcription elongation factor, N-terminal BJD94_14275 PF01985 CRS1 / YhbY (CRM) domain BJD94_14280 PF01728 FtsJ-like methyltransferase BJD94_14285 PF06480 FtsH Extracellular BJD94_14285 PF17862 AAA+ lid domain BJD94_14285 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_14285 PF01434 Peptidase family M41 BJD94_14290 PF00809 Pterin binding enzyme BJD94_14295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD94_14295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD94_14295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD94_14295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD94_14300 PF03840 Preprotein translocase SecG subunit BJD94_14315 PF02576 RimP N-terminal domain BJD94_14315 PF17384 RimP C-terminal SH3 domain BJD94_14320 PF08529 NusA N-terminal domain BJD94_14320 PF00575 S1 RNA binding domain BJD94_14320 PF13184 NusA-like KH domain BJD94_14325 PF04760 Translation initiation factor IF-2, N-terminal region BJD94_14325 PF08364 Bacterial translation initiation factor IF-2 associated region BJD94_14325 PF00009 Elongation factor Tu GTP binding domain BJD94_14325 PF11987 Translation-initiation factor 2 BJD94_14330 PF02033 Ribosome-binding factor A BJD94_14335 PF16198 tRNA pseudouridylate synthase B C-terminal domain BJD94_14335 PF01509 TruB family pseudouridylate synthase (N terminal domain) BJD94_14335 PF09157 Pseudouridine synthase II TruB, C-terminal BJD94_14340 PF00312 Ribosomal protein S15 BJD94_14365 PF00575 S1 RNA binding domain BJD94_14365 PF03725 3' exoribonuclease family, domain 2 BJD94_14365 PF01138 3' exoribonuclease family, domain 1 BJD94_14365 PF00013 KH domain BJD94_14365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BJD94_14370 PF07719 Tetratricopeptide repeat BJD94_14370 PF13181 Tetratricopeptide repeat BJD94_14380 PF01554 MatE BJD94_14395 PF00563 EAL domain BJD94_14395 PF00990 Diguanylate cyclase, GGDEF domain BJD94_14395 PF03707 Bacterial signalling protein N terminal repeat BJD94_14405 PF13508 Acetyltransferase (GNAT) domain BJD94_14415 PF00583 Acetyltransferase (GNAT) family BJD94_14420 PF00563 EAL domain BJD94_14420 PF03707 Bacterial signalling protein N terminal repeat BJD94_14420 PF00990 Diguanylate cyclase, GGDEF domain BJD94_14425 PF08448 PAS fold BJD94_14425 PF00990 Diguanylate cyclase, GGDEF domain BJD94_14430 PF03144 Elongation factor Tu domain 2 BJD94_14430 PF16658 Class II release factor RF3, C-terminal domain BJD94_14430 PF00009 Elongation factor Tu GTP binding domain BJD94_14435 PF01026 TatD related DNase BJD94_14440 PF01773 Na+ dependent nucleoside transporter N-terminus BJD94_14440 PF07670 Nucleoside recognition BJD94_14440 PF07662 Na+ dependent nucleoside transporter C-terminus BJD94_14445 PF01791 DeoC/LacD family aldolase BJD94_14450 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BJD94_14450 PF00591 Glycosyl transferase family, a/b domain BJD94_14450 PF02885 Glycosyl transferase family, helical bundle domain BJD94_14455 PF01676 Metalloenzyme superfamily BJD94_14460 PF01048 Phosphorylase superfamily BJD94_14470 PF18429 Domain of unknown function (DUF5609) BJD94_14480 PF18073 Rubredoxin metal binding domain BJD94_14485 PF00990 Diguanylate cyclase, GGDEF domain BJD94_14485 PF00563 EAL domain BJD94_14485 PF03707 Bacterial signalling protein N terminal repeat BJD94_14500 PF14492 Elongation Factor G, domain II BJD94_14500 PF00679 Elongation factor G C-terminus BJD94_14500 PF03764 Elongation factor G, domain IV BJD94_14500 PF00009 Elongation factor Tu GTP binding domain BJD94_14500 PF03144 Elongation factor Tu domain 2 BJD94_14505 PF00501 AMP-binding enzyme BJD94_14510 PF02311 AraC-like ligand binding domain BJD94_14510 PF12833 Helix-turn-helix domain BJD94_14540 PF00263 Bacterial type II and III secretion system protein BJD94_14540 PF13629 Pilus formation protein N terminal region BJD94_14540 PF04972 BON domain BJD94_14570 PF00437 Type II/IV secretion system protein BJD94_14590 PF02417 Chromate transporter BJD94_14595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_14595 PF03466 LysR substrate binding domain BJD94_14605 PF01204 Trehalase BJD94_14610 PF13520 Amino acid permease BJD94_14615 PF13520 Amino acid permease BJD94_14620 PF04074 YhcH/YjgK/YiaL BJD94_14625 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD94_14625 PF00703 Glycosyl hydrolases family 2 BJD94_14625 PF16353 Domain of unknown function(DUF4981) BJD94_14625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD94_14625 PF02929 Beta galactosidase small chain BJD94_14635 PF00356 Bacterial regulatory proteins, lacI family BJD94_14640 PF16363 GDP-mannose 4,6 dehydratase BJD94_14645 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BJD94_14645 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BJD94_14650 PF08544 GHMP kinases C terminal BJD94_14650 PF00288 GHMP kinases N terminal domain BJD94_14650 PF10509 Galactokinase galactose-binding signature BJD94_14655 PF01263 Aldose 1-epimerase BJD94_14660 PF00672 HAMP domain BJD94_14660 PF17200 Single Cache domain 2 BJD94_14660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_14665 PF00356 Bacterial regulatory proteins, lacI family BJD94_14670 PF01588 Putative tRNA binding domain BJD94_14685 PF08443 RimK-like ATP-grasp domain BJD94_14685 PF02080 TrkA-C domain BJD94_14685 PF18030 RimK PreATP-grasp domain BJD94_14695 PF01544 CorA-like Mg2+ transporter protein BJD94_14700 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BJD94_14700 PF01266 FAD dependent oxidoreductase BJD94_14705 PF08220 DeoR-like helix-turn-helix domain BJD94_14705 PF00455 DeoR C terminal sensor domain BJD94_14710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD94_14710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD94_14715 PF00230 Major intrinsic protein BJD94_14720 PF14602 Hexapeptide repeat of succinyl-transferase BJD94_14720 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle BJD94_14725 PF07130 YebG protein BJD94_14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_14730 PF03466 LysR substrate binding domain BJD94_14740 PF11893 Domain of unknown function (DUF3413) BJD94_14740 PF00884 Sulfatase BJD94_14745 PF17946 RecC C-terminal domain BJD94_14750 PF12705 PD-(D/E)XK nuclease superfamily BJD94_14750 PF00580 UvrD/REP helicase N-terminal domain BJD94_14750 PF13361 UvrD-like helicase C-terminal domain BJD94_14755 PF13538 UvrD-like helicase C-terminal domain BJD94_14775 PF03562 MltA specific insert domain BJD94_14775 PF06725 3D domain BJD94_14780 PF00899 ThiF family BJD94_14785 PF02657 Fe-S metabolism associated domain BJD94_14795 PF00266 Aminotransferase class-V BJD94_14800 PF01965 DJ-1/PfpI family BJD94_14805 PF02558 Ketopantoate reductase PanE/ApbA BJD94_14805 PF08546 Ketopantoate reductase PanE/ApbA C terminal BJD94_14810 PF03502 Nucleoside-specific channel-forming protein, Tsx BJD94_14820 PF04542 Sigma-70 region 2 BJD94_14820 PF04545 Sigma-70, region 4 BJD94_14830 PF07690 Major Facilitator Superfamily BJD94_14835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD94_14845 PF05175 Methyltransferase small domain BJD94_14850 PF01722 BolA-like protein BJD94_14860 PF03116 NQR2, RnfD, RnfE family BJD94_14865 PF04205 FMN-binding domain BJD94_14875 PF00072 Response regulator receiver domain BJD94_14875 PF00486 Transcriptional regulatory protein, C terminal BJD94_14880 PF00072 Response regulator receiver domain BJD94_14880 PF00486 Transcriptional regulatory protein, C terminal BJD94_14905 PF00491 Arginase family BJD94_14910 PF00270 DEAD/DEAH box helicase BJD94_14910 PF00271 Helicase conserved C-terminal domain BJD94_14920 PF02492 CobW/HypB/UreG, nucleotide-binding domain BJD94_14920 PF07683 Cobalamin synthesis protein cobW C-terminal domain BJD94_14930 PF00990 Diguanylate cyclase, GGDEF domain BJD94_14950 PF04324 BFD-like [2Fe-2S] binding domain BJD94_14950 PF18267 Rubredoxin NAD+ reductase C-terminal domain BJD94_14950 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_14950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD94_14950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD94_14955 PF00005 ABC transporter BJD94_14960 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_14970 PF03861 ANTAR domain BJD94_14970 PF08376 Nitrate and nitrite sensing BJD94_14975 PF01738 Dienelactone hydrolase family BJD94_14980 PF02885 Glycosyl transferase family, helical bundle domain BJD94_14980 PF00591 Glycosyl transferase family, a/b domain BJD94_14985 PF10414 Sirohaem synthase dimerisation region BJD94_14985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD94_14985 PF14824 Sirohaem biosynthesis protein central BJD94_14990 PF04324 BFD-like [2Fe-2S] binding domain BJD94_14990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD94_14990 PF00384 Molybdopterin oxidoreductase BJD94_14990 PF01568 Molydopterin dinucleotide binding domain BJD94_15000 PF00128 Alpha amylase, catalytic domain BJD94_15005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_15005 PF00672 HAMP domain BJD94_15010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_15010 PF00672 HAMP domain BJD94_15020 PF07968 Leukocidin/Hemolysin toxin family BJD94_15020 PF00652 Ricin-type beta-trefoil lectin domain BJD94_15025 PF07690 Major Facilitator Superfamily BJD94_15030 PF03009 Glycerophosphoryl diester phosphodiesterase family BJD94_15035 PF01523 Putative modulator of DNA gyrase BJD94_15040 PF01523 Putative modulator of DNA gyrase BJD94_15045 PF07963 Prokaryotic N-terminal methylation motif BJD94_15045 PF08334 Type II secretion system (T2SS), protein G BJD94_15050 PF03606 C4-dicarboxylate anaerobic carrier BJD94_15055 PF04011 LemA family BJD94_15060 PF01435 Peptidase family M48 BJD94_15075 PF04634 Protein of unknown function, DUF600 BJD94_15080 PF04740 LXG domain of WXG superfamily BJD94_15110 PF04717 Type VI secretion system, phage-baseplate injector BJD94_15110 PF16671 Actin cross-linking domain BJD94_15120 PF00004 ATPase family associated with various cellular activities (AAA) BJD94_15120 PF07724 AAA domain (Cdc48 subfamily) BJD94_15120 PF17871 AAA lid domain BJD94_15120 PF10431 C-terminal, D2-small domain, of ClpB protein BJD94_15180 PF00691 OmpA family BJD94_15180 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD94_15200 PF00069 Protein kinase domain BJD94_15200 PF03793 PASTA domain BJD94_15220 PF12843 Putative quorum-sensing-regulated virulence factor BJD94_15235 PF00563 EAL domain BJD94_15235 PF03707 Bacterial signalling protein N terminal repeat BJD94_15235 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15240 PF01329 Pterin 4 alpha carbinolamine dehydratase BJD94_15245 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BJD94_15250 PF00501 AMP-binding enzyme BJD94_15250 PF13193 AMP-binding enzyme C-terminal domain BJD94_15260 PF03466 LysR substrate binding domain BJD94_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_15270 PF00892 EamA-like transporter family BJD94_15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_15285 PF00512 His Kinase A (phospho-acceptor) domain BJD94_15285 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_15290 PF11849 Domain of unknown function (DUF3369) BJD94_15300 PF00962 Adenosine/AMP deaminase BJD94_15310 PF00676 Dehydrogenase E1 component BJD94_15315 PF02779 Transketolase, pyrimidine binding domain BJD94_15315 PF02780 Transketolase, C-terminal domain BJD94_15320 PF00364 Biotin-requiring enzyme BJD94_15320 PF02817 e3 binding domain BJD94_15320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD94_15325 PF00766 Electron transfer flavoprotein FAD-binding domain BJD94_15325 PF01012 Electron transfer flavoprotein domain BJD94_15330 PF01012 Electron transfer flavoprotein domain BJD94_15340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_15340 PF00672 HAMP domain BJD94_15345 PF00842 Alanine racemase, C-terminal domain BJD94_15345 PF01168 Alanine racemase, N-terminal domain BJD94_15350 PF07634 RtxA repeat BJD94_15350 PF11647 Membrane Localization Domain BJD94_15350 PF12146 Serine aminopeptidase, S33 BJD94_15350 PF11713 Peptidase C80 family BJD94_15350 PF16671 Actin cross-linking domain BJD94_15355 PF02794 RTX toxin acyltransferase family BJD94_15365 PF03412 Peptidase C39 family BJD94_15365 PF00005 ABC transporter BJD94_15365 PF00664 ABC transporter transmembrane region BJD94_15375 PF00664 ABC transporter transmembrane region BJD94_15375 PF00005 ABC transporter BJD94_15375 PF03412 Peptidase C39 family BJD94_15390 PF09722 Protein of unknown function (DUF2384) BJD94_15405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD94_15405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD94_15410 PF00378 Enoyl-CoA hydratase/isomerase BJD94_15415 PF00378 Enoyl-CoA hydratase/isomerase BJD94_15425 PF00171 Aldehyde dehydrogenase family BJD94_15430 PF02803 Thiolase, C-terminal domain BJD94_15430 PF00108 Thiolase, N-terminal domain BJD94_15435 PF00376 MerR family regulatory protein BJD94_15435 PF09278 MerR, DNA binding BJD94_15440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD94_15440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD94_15440 PF02770 Acyl-CoA dehydrogenase, middle domain BJD94_15445 PF01039 Carboxyl transferase domain BJD94_15450 PF00378 Enoyl-CoA hydratase/isomerase BJD94_15455 PF00682 HMGL-like BJD94_15460 PF10417 C-terminal domain of 1-Cys peroxiredoxin BJD94_15460 PF00578 AhpC/TSA family BJD94_15465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_15465 PF13192 Thioredoxin domain BJD94_15470 PF00313 'Cold-shock' DNA-binding domain BJD94_15480 PF01699 Sodium/calcium exchanger protein BJD94_15485 PF00440 Bacterial regulatory proteins, tetR family BJD94_15485 PF16925 Tetracyclin repressor-like, C-terminal domain BJD94_15490 PF00107 Zinc-binding dehydrogenase BJD94_15490 PF16884 N-terminal domain of oxidoreductase BJD94_15505 PF00486 Transcriptional regulatory protein, C terminal BJD94_15515 PF07690 Major Facilitator Superfamily BJD94_15520 PF00072 Response regulator receiver domain BJD94_15520 PF00196 Bacterial regulatory proteins, luxR family BJD94_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_15525 PF07730 Histidine kinase BJD94_15525 PF05231 MASE1 BJD94_15530 PF07690 Major Facilitator Superfamily BJD94_15535 PF01238 Phosphomannose isomerase type I BJD94_15545 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15555 PF00313 'Cold-shock' DNA-binding domain BJD94_15585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD94_15585 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD94_15590 PF13419 Haloacid dehalogenase-like hydrolase BJD94_15595 PF12729 Four helix bundle sensory module for signal transduction BJD94_15595 PF00672 HAMP domain BJD94_15595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_15600 PF00873 AcrB/AcrD/AcrF family BJD94_15605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_15610 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD94_15615 PF01546 Peptidase family M20/M25/M40 BJD94_15615 PF07687 Peptidase dimerisation domain BJD94_15625 PF00248 Aldo/keto reductase family BJD94_15645 PF00654 Voltage gated chloride channel BJD94_15655 PF01566 Natural resistance-associated macrophage protein BJD94_15660 PF01227 GTP cyclohydrolase I BJD94_15665 PF03454 MoeA C-terminal region (domain IV) BJD94_15665 PF03453 MoeA N-terminal region (domain I and II) BJD94_15665 PF00994 Probable molybdopterin binding domain BJD94_15670 PF00899 ThiF family BJD94_15675 PF00581 Rhodanese-like domain BJD94_15680 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15680 PF00563 EAL domain BJD94_15680 PF03707 Bacterial signalling protein N terminal repeat BJD94_15685 PF00704 Glycosyl hydrolases family 18 BJD94_15685 PF08329 Chitinase A, N-terminal domain BJD94_15695 PF00923 Transaldolase/Fructose-6-phosphate aldolase BJD94_15700 PF00456 Transketolase, thiamine diphosphate binding domain BJD94_15700 PF02780 Transketolase, C-terminal domain BJD94_15700 PF02779 Transketolase, pyrimidine binding domain BJD94_15710 PF00563 EAL domain BJD94_15710 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15710 PF03707 Bacterial signalling protein N terminal repeat BJD94_15715 PF08447 PAS fold BJD94_15715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_15720 PF00793 DAHP synthetase I family BJD94_15725 PF01389 OmpA-like transmembrane domain BJD94_15725 PF00691 OmpA family BJD94_15730 PF01040 UbiA prenyltransferase family BJD94_15735 PF02628 Cytochrome oxidase assembly protein BJD94_15750 PF00510 Cytochrome c oxidase subunit III BJD94_15755 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BJD94_15760 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD94_15765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BJD94_15765 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BJD94_15770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD94_15770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD94_15770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD94_15770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD94_15780 PF01810 LysE type translocator BJD94_15800 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD94_15805 PF01047 MarR family BJD94_15810 PF02566 OsmC-like protein BJD94_15820 PF00578 AhpC/TSA family BJD94_15830 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15830 PF00563 EAL domain BJD94_15830 PF03707 Bacterial signalling protein N terminal repeat BJD94_15835 PF00892 EamA-like transporter family BJD94_15840 PF00462 Glutaredoxin BJD94_15850 PF07690 Major Facilitator Superfamily BJD94_15855 PF03466 LysR substrate binding domain BJD94_15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_15860 PF00360 Phytochrome region BJD94_15860 PF00990 Diguanylate cyclase, GGDEF domain BJD94_15860 PF00563 EAL domain BJD94_15860 PF01590 GAF domain BJD94_15865 PF01042 Endoribonuclease L-PSP BJD94_15875 PF00728 Glycosyl hydrolase family 20, catalytic domain BJD94_15875 PF02838 Glycosyl hydrolase family 20, domain 2 BJD94_15880 PF00474 Sodium:solute symporter family BJD94_15890 PF07969 Amidohydrolase family BJD94_15900 PF01380 SIS domain BJD94_15900 PF01418 Helix-turn-helix domain, rpiR family BJD94_15900 PF02685 Glucokinase BJD94_15910 PF00005 ABC transporter BJD94_15920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD94_15930 PF12706 Beta-lactamase superfamily domain BJD94_15945 PF01047 MarR family BJD94_15960 PF00271 Helicase conserved C-terminal domain BJD94_15960 PF00270 DEAD/DEAH box helicase BJD94_15970 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_15985 PF03372 Endonuclease/Exonuclease/phosphatase family BJD94_15995 PF00579 tRNA synthetases class I (W and Y) BJD94_16000 PF00583 Acetyltransferase (GNAT) family BJD94_16005 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD94_16005 PF14760 Rnk N-terminus BJD94_16035 PF00478 IMP dehydrogenase / GMP reductase domain BJD94_16045 PF03853 YjeF-related protein N-terminus BJD94_16045 PF01256 Carbohydrate kinase BJD94_16065 PF00072 Response regulator receiver domain BJD94_16065 PF00196 Bacterial regulatory proteins, luxR family BJD94_16070 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BJD94_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_16070 PF00672 HAMP domain BJD94_16070 PF07730 Histidine kinase BJD94_16080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD94_16080 PF00384 Molybdopterin oxidoreductase BJD94_16080 PF01568 Molydopterin dinucleotide binding domain BJD94_16085 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BJD94_16090 PF03264 NapC/NirT cytochrome c family, N-terminal region BJD94_16105 PF00561 alpha/beta hydrolase fold BJD94_16105 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BJD94_16115 PF02803 Thiolase, C-terminal domain BJD94_16115 PF00108 Thiolase, N-terminal domain BJD94_16120 PF00106 short chain dehydrogenase BJD94_16125 PF07549 SecD/SecF GG Motif BJD94_16125 PF02355 Protein export membrane protein BJD94_16130 PF13721 SecD export protein N-terminal TM region BJD94_16130 PF07549 SecD/SecF GG Motif BJD94_16130 PF02355 Protein export membrane protein BJD94_16155 PF01037 Lrp/AsnC ligand binding domain BJD94_16170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_16170 PF00072 Response regulator receiver domain BJD94_16170 PF09308 LuxQ, periplasmic BJD94_16170 PF00512 His Kinase A (phospho-acceptor) domain BJD94_16175 PF13407 Periplasmic binding protein domain BJD94_16185 PF01541 GIY-YIG catalytic domain BJD94_16190 PF04337 Protein of unknown function, DUF480 BJD94_16200 PF04363 Protein of unknown function (DUF496) BJD94_16205 PF13006 Insertion element 4 transposase N-terminal BJD94_16205 PF01609 Transposase DDE domain BJD94_16210 PF01238 Phosphomannose isomerase type I BJD94_16225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_16225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_16235 PF05378 Hydantoinase/oxoprolinase N-terminal region BJD94_16235 PF01968 Hydantoinase/oxoprolinase BJD94_16245 PF07748 Glycosyl hydrolases family 38 C-terminal domain BJD94_16245 PF01074 Glycosyl hydrolases family 38 N-terminal domain BJD94_16245 PF09261 Alpha mannosidase middle domain BJD94_16250 PF00480 ROK family BJD94_16265 PF00480 ROK family BJD94_16280 PF02272 DHHA1 domain BJD94_16280 PF01411 tRNA synthetases class II (A) BJD94_16280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD94_16285 PF01609 Transposase DDE domain BJD94_16285 PF13006 Insertion element 4 transposase N-terminal BJD94_16290 PF01554 MatE BJD94_16295 PF00672 HAMP domain BJD94_16295 PF01627 Hpt domain BJD94_16295 PF00512 His Kinase A (phospho-acceptor) domain BJD94_16295 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD94_16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_16295 PF00072 Response regulator receiver domain BJD94_16310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD94_16310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD94_16320 PF03466 LysR substrate binding domain BJD94_16320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16330 PF08534 Redoxin BJD94_16330 PF00462 Glutaredoxin BJD94_16340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16340 PF03466 LysR substrate binding domain BJD94_16345 PF01037 Lrp/AsnC ligand binding domain BJD94_16350 PF13520 Amino acid permease BJD94_16355 PF13230 Glutamine amidotransferases class-II BJD94_16360 PF00155 Aminotransferase class I and II BJD94_16360 PF00392 Bacterial regulatory proteins, gntR family BJD94_16370 PF00672 HAMP domain BJD94_16370 PF16527 Two-component sensor protein CpxA, periplasmic domain BJD94_16370 PF00512 His Kinase A (phospho-acceptor) domain BJD94_16370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_16375 PF00486 Transcriptional regulatory protein, C terminal BJD94_16375 PF00072 Response regulator receiver domain BJD94_16385 PF12833 Helix-turn-helix domain BJD94_16385 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BJD94_16400 PF00571 CBS domain BJD94_16400 PF03448 MgtE intracellular N domain BJD94_16400 PF01769 Divalent cation transporter BJD94_16405 PF12833 Helix-turn-helix domain BJD94_16410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BJD94_16415 PF07969 Amidohydrolase family BJD94_16420 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD94_16420 PF13654 AAA domain BJD94_16430 PF00005 ABC transporter BJD94_16430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_16435 PF00326 Prolyl oligopeptidase family BJD94_16435 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD94_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16440 PF03466 LysR substrate binding domain BJD94_16445 PF02652 L-lactate permease BJD94_16450 PF02754 Cysteine-rich domain BJD94_16455 PF02589 LUD domain BJD94_16455 PF11870 Domain of unknown function (DUF3390) BJD94_16455 PF13183 4Fe-4S dicluster domain BJD94_16460 PF02589 LUD domain BJD94_16480 PF07690 Major Facilitator Superfamily BJD94_16525 PF02378 Phosphotransferase system, EIIC BJD94_16540 PF17185 NlpE C-terminal OB domain BJD94_16540 PF04170 NlpE N-terminal domain BJD94_16545 PF00005 ABC transporter BJD94_16550 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_16555 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_16560 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_16575 PF00990 Diguanylate cyclase, GGDEF domain BJD94_16575 PF00563 EAL domain BJD94_16575 PF08448 PAS fold BJD94_16580 PF17996 Carbohydrate esterase 2 N-terminal BJD94_16580 PF13472 GDSL-like Lipase/Acylhydrolase family BJD94_16590 PF00672 HAMP domain BJD94_16590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_16590 PF12729 Four helix bundle sensory module for signal transduction BJD94_16595 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD94_16610 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BJD94_16610 PF01648 4'-phosphopantetheinyl transferase superfamily BJD94_16615 PF00668 Condensation domain BJD94_16615 PF00501 AMP-binding enzyme BJD94_16615 PF13193 AMP-binding enzyme C-terminal domain BJD94_16615 PF07993 Male sterility protein BJD94_16615 PF00550 Phosphopantetheine attachment site BJD94_16620 PF00501 AMP-binding enzyme BJD94_16620 PF13193 AMP-binding enzyme C-terminal domain BJD94_16620 PF00668 Condensation domain BJD94_16620 PF00975 Thioesterase domain BJD94_16620 PF00550 Phosphopantetheine attachment site BJD94_16625 PF00793 DAHP synthetase I family BJD94_16635 PF00425 chorismate binding enzyme BJD94_16640 PF00501 AMP-binding enzyme BJD94_16640 PF13193 AMP-binding enzyme C-terminal domain BJD94_16645 PF08021 Siderophore-interacting FAD-binding domain BJD94_16645 PF04954 Siderophore-interacting protein BJD94_16650 PF00857 Isochorismatase family BJD94_16650 PF00550 Phosphopantetheine attachment site BJD94_16660 PF13193 AMP-binding enzyme C-terminal domain BJD94_16660 PF00501 AMP-binding enzyme BJD94_16670 PF01497 Periplasmic binding protein BJD94_16675 PF07715 TonB-dependent Receptor Plug Domain BJD94_16680 PF00668 Condensation domain BJD94_16680 PF00550 Phosphopantetheine attachment site BJD94_16680 PF00975 Thioesterase domain BJD94_16680 PF13193 AMP-binding enzyme C-terminal domain BJD94_16680 PF00501 AMP-binding enzyme BJD94_16685 PF08443 RimK-like ATP-grasp domain BJD94_16685 PF18030 RimK PreATP-grasp domain BJD94_16690 PF18030 RimK PreATP-grasp domain BJD94_16690 PF08443 RimK-like ATP-grasp domain BJD94_16695 PF00753 Metallo-beta-lactamase superfamily BJD94_16705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_16710 PF00873 AcrB/AcrD/AcrF family BJD94_16720 PF01212 Beta-eliminating lyase BJD94_16725 PF03222 Tryptophan/tyrosine permease family BJD94_16730 PF16326 ABC transporter C-terminal domain BJD94_16730 PF12848 ABC transporter BJD94_16730 PF00005 ABC transporter BJD94_16740 PF00175 Oxidoreductase NAD-binding domain BJD94_16740 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_16740 PF00970 Oxidoreductase FAD-binding domain BJD94_16745 PF00356 Bacterial regulatory proteins, lacI family BJD94_16750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_16760 PF03611 PTS system sugar-specific permease component BJD94_16765 PF01327 Polypeptide deformylase BJD94_16770 PF00041 Fibronectin type III domain BJD94_16770 PF12561 ToxR activated gene A lipoprotein domain BJD94_16775 PF03471 Transporter associated domain BJD94_16775 PF00571 CBS domain BJD94_16775 PF01595 Cyclin M transmembrane N-terminal domain BJD94_16780 PF00171 Aldehyde dehydrogenase family BJD94_16785 PF00158 Sigma-54 interaction domain BJD94_16785 PF02954 Bacterial regulatory protein, Fis family BJD94_16785 PF01590 GAF domain BJD94_16790 PF00990 Diguanylate cyclase, GGDEF domain BJD94_16790 PF03707 Bacterial signalling protein N terminal repeat BJD94_16790 PF00563 EAL domain BJD94_16795 PF13407 Periplasmic binding protein domain BJD94_16800 PF02798 Glutathione S-transferase, N-terminal domain BJD94_16800 PF14497 Glutathione S-transferase, C-terminal domain BJD94_16805 PF03466 LysR substrate binding domain BJD94_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16810 PF02567 Phenazine biosynthesis-like protein BJD94_16815 PF00072 Response regulator receiver domain BJD94_16815 PF00196 Bacterial regulatory proteins, luxR family BJD94_16820 PF01479 S4 domain BJD94_16820 PF00579 tRNA synthetases class I (W and Y) BJD94_16825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD94_16825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD94_16840 PF13533 Biotin-lipoyl like BJD94_16850 PF00753 Metallo-beta-lactamase superfamily BJD94_16850 PF14863 Alkyl sulfatase dimerisation BJD94_16850 PF14864 Alkyl sulfatase C-terminal BJD94_16860 PF03466 LysR substrate binding domain BJD94_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16865 PF00884 Sulfatase BJD94_16865 PF08019 Phosphoethanolamine transferase EptA/EptB BJD94_16870 PF01758 Sodium Bile acid symporter family BJD94_16875 PF01022 Bacterial regulatory protein, arsR family BJD94_16890 PF07687 Peptidase dimerisation domain BJD94_16890 PF01546 Peptidase family M20/M25/M40 BJD94_16895 PF07670 Nucleoside recognition BJD94_16900 PF07670 Nucleoside recognition BJD94_16910 PF00128 Alpha amylase, catalytic domain BJD94_16915 PF01081 KDPG and KHG aldolase BJD94_16920 PF00294 pfkB family carbohydrate kinase BJD94_16925 PF00892 EamA-like transporter family BJD94_16935 PF03466 LysR substrate binding domain BJD94_16935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_16950 PF08543 Phosphomethylpyrimidine kinase BJD94_16955 PF00155 Aminotransferase class I and II BJD94_16960 PF06826 Predicted Permease Membrane Region BJD94_16960 PF02080 TrkA-C domain BJD94_16970 PF13533 Biotin-lipoyl like BJD94_16985 PF00135 Carboxylesterase family BJD94_16990 PF13091 PLD-like domain BJD94_16995 PF01103 Surface antigen BJD94_16995 PF17243 POTRA domain TamA domain 1 BJD94_17005 PF07883 Cupin domain BJD94_17010 PF10688 Bacterial inner membrane protein BJD94_17020 PF01614 Bacterial transcriptional regulator BJD94_17020 PF09339 IclR helix-turn-helix domain BJD94_17055 PF00924 Mechanosensitive ion channel BJD94_17065 PF00873 AcrB/AcrD/AcrF family BJD94_17070 PF13533 Biotin-lipoyl like BJD94_17085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD94_17085 PF01627 Hpt domain BJD94_17085 PF00072 Response regulator receiver domain BJD94_17085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17085 PF00512 His Kinase A (phospho-acceptor) domain BJD94_17085 PF00672 HAMP domain BJD94_17090 PF00293 NUDIX domain BJD94_17095 PF01161 Phosphatidylethanolamine-binding protein BJD94_17100 PF12833 Helix-turn-helix domain BJD94_17105 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BJD94_17110 PF00376 MerR family regulatory protein BJD94_17110 PF09278 MerR, DNA binding BJD94_17120 PF02378 Phosphotransferase system, EIIC BJD94_17120 PF00367 phosphotransferase system, EIIB BJD94_17130 PF00990 Diguanylate cyclase, GGDEF domain BJD94_17130 PF17151 Periplasmic sensor domain BJD94_17135 PF00583 Acetyltransferase (GNAT) family BJD94_17140 PF00679 Elongation factor G C-terminus BJD94_17140 PF03144 Elongation factor Tu domain 2 BJD94_17140 PF00009 Elongation factor Tu GTP binding domain BJD94_17140 PF03764 Elongation factor G, domain IV BJD94_17140 PF14492 Elongation Factor G, domain II BJD94_17155 PF02001 Protein of unknown function DUF134 BJD94_17165 PF00034 Cytochrome c BJD94_17165 PF03150 Di-haem cytochrome c peroxidase BJD94_17170 PF06942 GlpM protein BJD94_17180 PF12833 Helix-turn-helix domain BJD94_17185 PF07690 Major Facilitator Superfamily BJD94_17205 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BJD94_17210 PF00892 EamA-like transporter family BJD94_17215 PF00970 Oxidoreductase FAD-binding domain BJD94_17215 PF00175 Oxidoreductase NAD-binding domain BJD94_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_17225 PF03466 LysR substrate binding domain BJD94_17235 PF00881 Nitroreductase family BJD94_17240 PF00561 alpha/beta hydrolase fold BJD94_17250 PF00271 Helicase conserved C-terminal domain BJD94_17250 PF00270 DEAD/DEAH box helicase BJD94_17280 PF01447 Thermolysin metallopeptidase, catalytic domain BJD94_17280 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD94_17280 PF03413 Peptidase propeptide and YPEB domain BJD94_17280 PF04151 Bacterial pre-peptidase C-terminal domain BJD94_17280 PF07504 Fungalysin/Thermolysin Propeptide Motif BJD94_17285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD94_17285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD94_17295 PF13599 Pentapeptide repeats (9 copies) BJD94_17305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_17305 PF00672 HAMP domain BJD94_17310 PF00672 HAMP domain BJD94_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17310 PF00512 His Kinase A (phospho-acceptor) domain BJD94_17310 PF00072 Response regulator receiver domain BJD94_17310 PF01627 Hpt domain BJD94_17310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD94_17315 PF00072 Response regulator receiver domain BJD94_17325 PF01266 FAD dependent oxidoreductase BJD94_17345 PF00072 Response regulator receiver domain BJD94_17345 PF02954 Bacterial regulatory protein, Fis family BJD94_17345 PF00158 Sigma-54 interaction domain BJD94_17350 PF02743 Cache domain BJD94_17350 PF00512 His Kinase A (phospho-acceptor) domain BJD94_17350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17360 PF14864 Alkyl sulfatase C-terminal BJD94_17360 PF14863 Alkyl sulfatase dimerisation BJD94_17360 PF00753 Metallo-beta-lactamase superfamily BJD94_17370 PF00486 Transcriptional regulatory protein, C terminal BJD94_17370 PF00072 Response regulator receiver domain BJD94_17375 PF00512 His Kinase A (phospho-acceptor) domain BJD94_17375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17375 PF00672 HAMP domain BJD94_17380 PF03466 LysR substrate binding domain BJD94_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_17385 PF00529 HlyD membrane-fusion protein of T1SS BJD94_17395 PF01717 Cobalamin-independent synthase, Catalytic domain BJD94_17395 PF08267 Cobalamin-independent synthase, N-terminal domain BJD94_17405 PF00990 Diguanylate cyclase, GGDEF domain BJD94_17420 PF00929 Exonuclease BJD94_17420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD94_17420 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD94_17420 PF11490 DNA polymerase III polC-type N-terminus II BJD94_17420 PF14579 Helix-hairpin-helix motif BJD94_17420 PF02811 PHP domain BJD94_17425 PF02687 FtsX-like permease family BJD94_17425 PF00005 ABC transporter BJD94_17425 PF12704 MacB-like periplasmic core domain BJD94_17430 PF12704 MacB-like periplasmic core domain BJD94_17430 PF02687 FtsX-like permease family BJD94_17430 PF00005 ABC transporter BJD94_17435 PF00005 ABC transporter BJD94_17435 PF12704 MacB-like periplasmic core domain BJD94_17435 PF02687 FtsX-like permease family BJD94_17460 PF00005 ABC transporter BJD94_17465 PF01497 Periplasmic binding protein BJD94_17470 PF01032 FecCD transport family BJD94_17480 PF00593 TonB dependent receptor BJD94_17480 PF07715 TonB-dependent Receptor Plug Domain BJD94_17485 PF01116 Fructose-bisphosphate aldolase class-II BJD94_17490 PF01979 Amidohydrolase family BJD94_17495 PF03610 PTS system fructose IIA component BJD94_17500 PF03613 PTS system mannose/fructose/sorbose family IID component BJD94_17505 PF03609 PTS system sorbose-specific iic component BJD94_17510 PF03830 PTS system sorbose subfamily IIB component BJD94_17515 PF01380 SIS domain BJD94_17520 PF08013 Tagatose 6 phosphate kinase BJD94_17525 PF00455 DeoR C terminal sensor domain BJD94_17525 PF08220 DeoR-like helix-turn-helix domain BJD94_17535 PF08220 DeoR-like helix-turn-helix domain BJD94_17535 PF00455 DeoR C terminal sensor domain BJD94_17540 PF00892 EamA-like transporter family BJD94_17545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BJD94_17545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD94_17550 PF03466 LysR substrate binding domain BJD94_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_17555 PF00753 Metallo-beta-lactamase superfamily BJD94_17555 PF14863 Alkyl sulfatase dimerisation BJD94_17555 PF14864 Alkyl sulfatase C-terminal BJD94_17605 PF01641 SelR domain BJD94_17610 PF01625 Peptide methionine sulfoxide reductase BJD94_17630 PF00672 HAMP domain BJD94_17630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_17645 PF00462 Glutaredoxin BJD94_17650 PF12833 Helix-turn-helix domain BJD94_17650 PF12852 Cupin BJD94_17675 PF03473 MOSC domain BJD94_17675 PF03475 3-alpha domain BJD94_17690 PF00356 Bacterial regulatory proteins, lacI family BJD94_17695 PF03553 Na+/H+ antiporter family BJD94_17700 PF00155 Aminotransferase class I and II BJD94_17705 PF00270 DEAD/DEAH box helicase BJD94_17705 PF00271 Helicase conserved C-terminal domain BJD94_17715 PF00005 ABC transporter BJD94_17715 PF00664 ABC transporter transmembrane region BJD94_17725 PF01037 Lrp/AsnC ligand binding domain BJD94_17730 PF00474 Sodium:solute symporter family BJD94_17740 PF00171 Aldehyde dehydrogenase family BJD94_17740 PF01619 Proline dehydrogenase BJD94_17740 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BJD94_17740 PF14850 DNA-binding domain of Proline dehydrogenase BJD94_17745 PF12833 Helix-turn-helix domain BJD94_17755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BJD94_17755 PF01243 Pyridoxamine 5'-phosphate oxidase BJD94_17760 PF02743 Cache domain BJD94_17760 PF00512 His Kinase A (phospho-acceptor) domain BJD94_17760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17765 PF02954 Bacterial regulatory protein, Fis family BJD94_17765 PF00158 Sigma-54 interaction domain BJD94_17765 PF00072 Response regulator receiver domain BJD94_17770 PF00529 HlyD membrane-fusion protein of T1SS BJD94_17785 PF00664 ABC transporter transmembrane region BJD94_17785 PF00005 ABC transporter BJD94_17785 PF03412 Peptidase C39 family BJD94_17795 PF03606 C4-dicarboxylate anaerobic carrier BJD94_17800 PF01979 Amidohydrolase family BJD94_17815 PF00118 TCP-1/cpn60 chaperonin family BJD94_17820 PF00166 Chaperonin 10 Kd subunit BJD94_17830 PF01029 NusB family BJD94_17830 PF01189 16S rRNA methyltransferase RsmB/F BJD94_17835 PF01380 SIS domain BJD94_17835 PF01418 Helix-turn-helix domain, rpiR family BJD94_17840 PF13580 SIS domain BJD94_17845 PF00367 phosphotransferase system, EIIB BJD94_17845 PF02378 Phosphotransferase system, EIIC BJD94_17855 PF00300 Histidine phosphatase superfamily (branch 1) BJD94_17860 PF08453 Peptidase family M9 N-terminal BJD94_17860 PF01752 Collagenase BJD94_17860 PF04151 Bacterial pre-peptidase C-terminal domain BJD94_17895 PF00990 Diguanylate cyclase, GGDEF domain BJD94_17895 PF00072 Response regulator receiver domain BJD94_17905 PF02203 Tar ligand binding domain homologue BJD94_17905 PF00672 HAMP domain BJD94_17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_17910 PF00072 Response regulator receiver domain BJD94_17910 PF01339 CheB methylesterase BJD94_17915 PF03975 CheD chemotactic sensory transduction BJD94_17920 PF01739 CheR methyltransferase, SAM binding domain BJD94_17920 PF03705 CheR methyltransferase, all-alpha domain BJD94_17925 PF00672 HAMP domain BJD94_17925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_17925 PF02203 Tar ligand binding domain homologue BJD94_17930 PF01584 CheW-like domain BJD94_17935 PF01584 CheW-like domain BJD94_17940 PF01627 Hpt domain BJD94_17940 PF01584 CheW-like domain BJD94_17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_17940 PF02895 Signal transducing histidine kinase, homodimeric domain BJD94_17940 PF09078 CheY binding BJD94_17945 PF00072 Response regulator receiver domain BJD94_17955 PF13718 GNAT acetyltransferase 2 BJD94_17955 PF05127 Helicase BJD94_17960 PF02195 ParB-like nuclease domain BJD94_17960 PF08775 ParB family BJD94_17965 PF18607 ParA helix turn helix domain BJD94_17965 PF13614 AAA domain BJD94_17980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_17980 PF00005 ABC transporter BJD94_17985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_17985 PF00005 ABC transporter BJD94_17995 PF08719 Domain of unknown function (DUF1768) BJD94_17995 PF00925 GTP cyclohydrolase II BJD94_18005 PF00072 Response regulator receiver domain BJD94_18005 PF00512 His Kinase A (phospho-acceptor) domain BJD94_18005 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD94_18005 PF00672 HAMP domain BJD94_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_18005 PF01627 Hpt domain BJD94_18015 PF01709 Transcriptional regulator BJD94_18025 PF00005 ABC transporter BJD94_18030 PF02687 FtsX-like permease family BJD94_18030 PF12704 MacB-like periplasmic core domain BJD94_18045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_18045 PF07694 5TMR of 5TMR-LYT BJD94_18045 PF06580 Histidine kinase BJD94_18050 PF04397 LytTr DNA-binding domain BJD94_18050 PF00072 Response regulator receiver domain BJD94_18055 PF17200 Single Cache domain 2 BJD94_18055 PF00672 HAMP domain BJD94_18055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_18065 PF03616 Sodium/glutamate symporter BJD94_18070 PF03616 Sodium/glutamate symporter BJD94_18080 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD94_18095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18095 PF03466 LysR substrate binding domain BJD94_18100 PF13006 Insertion element 4 transposase N-terminal BJD94_18100 PF01609 Transposase DDE domain BJD94_18110 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD94_18110 PF06029 AlkA N-terminal domain BJD94_18115 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD94_18115 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BJD94_18120 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BJD94_18130 PF03600 Citrate transporter BJD94_18140 PF00440 Bacterial regulatory proteins, tetR family BJD94_18140 PF08361 MAATS-type transcriptional repressor, C-terminal region BJD94_18150 PF08329 Chitinase A, N-terminal domain BJD94_18150 PF00704 Glycosyl hydrolases family 18 BJD94_18160 PF06865 Pyrimidine/purine nucleoside phosphorylase BJD94_18165 PF02678 Pirin BJD94_18165 PF05726 Pirin C-terminal cupin domain BJD94_18170 PF00990 Diguanylate cyclase, GGDEF domain BJD94_18170 PF00563 EAL domain BJD94_18175 PF00990 Diguanylate cyclase, GGDEF domain BJD94_18175 PF17158 Membrane-associated sensor, integral membrane domain BJD94_18180 PF00128 Alpha amylase, catalytic domain BJD94_18180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD94_18185 PF02264 LamB porin BJD94_18190 PF07148 Maltose operon periplasmic protein precursor (MalM) BJD94_18200 PF01547 Bacterial extracellular solute-binding protein BJD94_18205 PF00128 Alpha amylase, catalytic domain BJD94_18205 PF02903 Alpha amylase, N-terminal ig-like domain BJD94_18205 PF16657 Maltogenic Amylase, C-terminal domain BJD94_18215 PF17967 Pullulanase N2 domain BJD94_18215 PF18494 Pullulanase Ins domain BJD94_18215 PF11852 Domain of unknown function (DUF3372) BJD94_18215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD94_18215 PF03714 Bacterial pullanase-associated domain BJD94_18230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BJD94_18230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BJD94_18230 PF01276 Orn/Lys/Arg decarboxylase, major domain BJD94_18235 PF13520 Amino acid permease BJD94_18240 PF08543 Phosphomethylpyrimidine kinase BJD94_18270 PF13545 Crp-like helix-turn-helix domain BJD94_18270 PF00027 Cyclic nucleotide-binding domain BJD94_18275 PF00375 Sodium:dicarboxylate symporter family BJD94_18280 PF03193 RsgA GTPase BJD94_18285 PF04314 Copper chaperone PCu(A)C BJD94_18290 PF02630 SCO1/SenC BJD94_18315 PF17874 MalT-like TPR region BJD94_18315 PF00196 Bacterial regulatory proteins, luxR family BJD94_18320 PF00343 Carbohydrate phosphorylase BJD94_18325 PF02446 4-alpha-glucanotransferase BJD94_18330 PF02806 Alpha amylase, C-terminal all-beta domain BJD94_18330 PF00128 Alpha amylase, catalytic domain BJD94_18330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD94_18335 PF00672 HAMP domain BJD94_18335 PF16591 Helical bimodular sensor domain BJD94_18335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_18340 PF00919 Uncharacterized protein family UPF0004 BJD94_18340 PF18693 TRAM domain BJD94_18340 PF04055 Radical SAM superfamily BJD94_18345 PF01810 LysE type translocator BJD94_18350 PF01037 Lrp/AsnC ligand binding domain BJD94_18370 PF01470 Pyroglutamyl peptidase BJD94_18380 PF02661 Fic/DOC family BJD94_18390 PF00672 HAMP domain BJD94_18390 PF02743 Cache domain BJD94_18390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_18400 PF00171 Aldehyde dehydrogenase family BJD94_18405 PF02798 Glutathione S-transferase, N-terminal domain BJD94_18410 PF01966 HD domain BJD94_18415 PF02690 Na+/Pi-cotransporter BJD94_18420 PF00675 Insulinase (Peptidase family M16) BJD94_18420 PF05193 Peptidase M16 inactive domain BJD94_18430 PF03466 LysR substrate binding domain BJD94_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_18440 PF00512 His Kinase A (phospho-acceptor) domain BJD94_18440 PF08521 Two-component sensor kinase N-terminal BJD94_18445 PF00486 Transcriptional regulatory protein, C terminal BJD94_18445 PF00072 Response regulator receiver domain BJD94_18460 PF00501 AMP-binding enzyme BJD94_18470 PF00990 Diguanylate cyclase, GGDEF domain BJD94_18480 PF02264 LamB porin BJD94_18485 PF00356 Bacterial regulatory proteins, lacI family BJD94_18495 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_18500 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_18505 PF00232 Glycosyl hydrolase family 1 BJD94_18510 PF00005 ABC transporter BJD94_18510 PF17912 MalK OB fold domain BJD94_18515 PF00356 Bacterial regulatory proteins, lacI family BJD94_18525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_18530 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_18535 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_18535 PF12911 N-terminal TM domain of oligopeptide transport permease C BJD94_18540 PF00005 ABC transporter BJD94_18540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_18545 PF00005 ABC transporter BJD94_18545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD94_18555 PF00356 Bacterial regulatory proteins, lacI family BJD94_18565 PF00722 Glycosyl hydrolases family 16 BJD94_18570 PF02264 LamB porin BJD94_18575 PF12833 Helix-turn-helix domain BJD94_18580 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD94_18580 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD94_18580 PF14310 Fibronectin type III-like domain BJD94_18585 PF01554 MatE BJD94_18595 PF00529 HlyD membrane-fusion protein of T1SS BJD94_18595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_18625 PF00849 RNA pseudouridylate synthase BJD94_18630 PF17151 Periplasmic sensor domain BJD94_18630 PF00990 Diguanylate cyclase, GGDEF domain BJD94_18635 PF00873 AcrB/AcrD/AcrF family BJD94_18650 PF00356 Bacterial regulatory proteins, lacI family BJD94_18655 PF02653 Branched-chain amino acid transport system / permease component BJD94_18660 PF00005 ABC transporter BJD94_18665 PF13407 Periplasmic binding protein domain BJD94_18670 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD94_18670 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD94_18670 PF00703 Glycosyl hydrolases family 2 BJD94_18670 PF16353 Domain of unknown function(DUF4981) BJD94_18670 PF02929 Beta galactosidase small chain BJD94_18680 PF16874 Glycosyl hydrolase family 36 C-terminal domain BJD94_18680 PF16875 Glycosyl hydrolase family 36 N-terminal domain BJD94_18695 PF00588 SpoU rRNA Methylase family BJD94_18695 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD94_18700 PF00037 4Fe-4S binding domain BJD94_18700 PF11953 Domain of unknown function (DUF3470) BJD94_18710 PF07702 UTRA domain BJD94_18710 PF00392 Bacterial regulatory proteins, gntR family BJD94_18715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_18715 PF02378 Phosphotransferase system, EIIC BJD94_18715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_18720 PF01074 Glycosyl hydrolases family 38 N-terminal domain BJD94_18720 PF09261 Alpha mannosidase middle domain BJD94_18720 PF07748 Glycosyl hydrolases family 38 C-terminal domain BJD94_18725 PF02595 Glycerate kinase family BJD94_18730 PF01238 Phosphomannose isomerase type I BJD94_18735 PF07715 TonB-dependent Receptor Plug Domain BJD94_18735 PF00593 TonB dependent receptor BJD94_18740 PF12833 Helix-turn-helix domain BJD94_18765 PF01590 GAF domain BJD94_18765 PF00158 Sigma-54 interaction domain BJD94_18780 PF01238 Phosphomannose isomerase type I BJD94_18785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_18785 PF02378 Phosphotransferase system, EIIC BJD94_18785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_18790 PF12833 Helix-turn-helix domain BJD94_18800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_18815 PF07971 Glycosyl hydrolase family 92 BJD94_18815 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD94_18820 PF07971 Glycosyl hydrolase family 92 BJD94_18820 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD94_18830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_18830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_18845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD94_18845 PF01568 Molydopterin dinucleotide binding domain BJD94_18845 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BJD94_18845 PF00384 Molybdopterin oxidoreductase BJD94_18845 PF12838 4Fe-4S dicluster domain BJD94_18855 PF01048 Phosphorylase superfamily BJD94_18860 PF03466 LysR substrate binding domain BJD94_18860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18865 PF01752 Collagenase BJD94_18865 PF04151 Bacterial pre-peptidase C-terminal domain BJD94_18865 PF08453 Peptidase family M9 N-terminal BJD94_18890 PF04973 Nicotinamide mononucleotide transporter BJD94_18895 PF01048 Phosphorylase superfamily BJD94_18915 PF03466 LysR substrate binding domain BJD94_18915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18930 PF00764 Arginosuccinate synthase BJD94_18935 PF03466 LysR substrate binding domain BJD94_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18940 PF00375 Sodium:dicarboxylate symporter family BJD94_18970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_18970 PF03466 LysR substrate binding domain BJD94_18980 PF00881 Nitroreductase family BJD94_18985 PF05958 tRNA (Uracil-5-)-methyltransferase BJD94_18990 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BJD94_19025 PF00155 Aminotransferase class I and II BJD94_19025 PF00392 Bacterial regulatory proteins, gntR family BJD94_19035 PF00990 Diguanylate cyclase, GGDEF domain BJD94_19035 PF17158 Membrane-associated sensor, integral membrane domain BJD94_19050 PF04231 Endonuclease I BJD94_19055 PF00128 Alpha amylase, catalytic domain BJD94_19055 PF02903 Alpha amylase, N-terminal ig-like domain BJD94_19055 PF16657 Maltogenic Amylase, C-terminal domain BJD94_19065 PF00884 Sulfatase BJD94_19070 PF08019 Phosphoethanolamine transferase EptA/EptB BJD94_19070 PF00884 Sulfatase BJD94_19075 PF01219 Prokaryotic diacylglycerol kinase BJD94_19080 PF00672 HAMP domain BJD94_19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_19080 PF00512 His Kinase A (phospho-acceptor) domain BJD94_19085 PF00486 Transcriptional regulatory protein, C terminal BJD94_19085 PF00072 Response regulator receiver domain BJD94_19090 PF00106 short chain dehydrogenase BJD94_19095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_19095 PF03466 LysR substrate binding domain BJD94_19115 PF01323 DSBA-like thioredoxin domain BJD94_19120 PF00282 Pyridoxal-dependent decarboxylase conserved domain BJD94_19150 PF01569 PAP2 superfamily BJD94_19155 PF08543 Phosphomethylpyrimidine kinase BJD94_19160 PF04013 Putative SAM-dependent RNA methyltransferase BJD94_19210 PF10928 Protein of unknown function (DUF2810) BJD94_19220 PF07690 Major Facilitator Superfamily BJD94_19240 PF13416 Bacterial extracellular solute-binding protein BJD94_19245 PF07715 TonB-dependent Receptor Plug Domain BJD94_19245 PF00593 TonB dependent receptor BJD94_19255 PF03707 Bacterial signalling protein N terminal repeat BJD94_19255 PF00990 Diguanylate cyclase, GGDEF domain BJD94_19255 PF00563 EAL domain BJD94_19265 PF01906 Putative heavy-metal-binding BJD94_19270 PF03466 LysR substrate binding domain BJD94_19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_19280 PF01966 HD domain BJD94_19300 PF00080 Copper/zinc superoxide dismutase (SODC) BJD94_19310 PF06628 Catalase-related immune-responsive BJD94_19310 PF00199 Catalase BJD94_19330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD94_19335 PF03466 LysR substrate binding domain BJD94_19335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_19340 PF07690 Major Facilitator Superfamily BJD94_19355 PF00657 GDSL-like Lipase/Acylhydrolase BJD94_19360 PF00155 Aminotransferase class I and II BJD94_19365 PF08240 Alcohol dehydrogenase GroES-like domain BJD94_19365 PF00107 Zinc-binding dehydrogenase BJD94_19400 PF08212 Lipocalin-like domain BJD94_19420 PF01609 Transposase DDE domain BJD94_19420 PF13006 Insertion element 4 transposase N-terminal BJD94_19445 PF04076 Bacterial OB fold (BOF) protein BJD94_19455 PF00664 ABC transporter transmembrane region BJD94_19455 PF00005 ABC transporter BJD94_19455 PF03412 Peptidase C39 family BJD94_19460 PF00529 HlyD membrane-fusion protein of T1SS BJD94_19465 PF02321 Outer membrane efflux protein BJD94_19480 PF00194 Eukaryotic-type carbonic anhydrase BJD94_19485 PF00924 Mechanosensitive ion channel BJD94_19495 PF00672 HAMP domain BJD94_19495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19500 PF07238 PilZ domain BJD94_19500 PF12945 Flagellar protein YcgR BJD94_19510 PF13302 Acetyltransferase (GNAT) domain BJD94_19515 PF14685 Tricorn protease PDZ domain BJD94_19515 PF14684 Tricorn protease C1 domain BJD94_19515 PF03572 Peptidase family S41 BJD94_19515 PF07676 WD40-like Beta Propeller Repeat BJD94_19530 PF12558 ATP-binding cassette cobalt transporter BJD94_19530 PF00005 ABC transporter BJD94_19535 PF07155 ECF-type riboflavin transporter, S component BJD94_19540 PF00529 HlyD membrane-fusion protein of T1SS BJD94_19540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD94_19545 PF11742 Protein of unknown function (DUF3302) BJD94_19550 PF00990 Diguanylate cyclase, GGDEF domain BJD94_19565 PF01048 Phosphorylase superfamily BJD94_19570 PF08349 Protein of unknown function (DUF1722) BJD94_19575 PF13411 MerR HTH family regulatory protein BJD94_19580 PF03441 FAD binding domain of DNA photolyase BJD94_19580 PF00875 DNA photolyase BJD94_19585 PF01476 LysM domain BJD94_19585 PF03734 L,D-transpeptidase catalytic domain BJD94_19585 PF17969 L,D-transpeptidase C-terminal domain BJD94_19615 PF00271 Helicase conserved C-terminal domain BJD94_19615 PF00270 DEAD/DEAH box helicase BJD94_19620 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD94_19620 PF00326 Prolyl oligopeptidase family BJD94_19625 PF04886 PT repeat BJD94_19625 PF07715 TonB-dependent Receptor Plug Domain BJD94_19625 PF00593 TonB dependent receptor BJD94_19645 PF02743 Cache domain BJD94_19645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19645 PF00672 HAMP domain BJD94_19650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19650 PF00672 HAMP domain BJD94_19650 PF12729 Four helix bundle sensory module for signal transduction BJD94_19655 PF12849 PBP superfamily domain BJD94_19660 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_19665 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_19670 PF00005 ABC transporter BJD94_19675 PF00563 EAL domain BJD94_19675 PF01590 GAF domain BJD94_19675 PF00990 Diguanylate cyclase, GGDEF domain BJD94_19675 PF00360 Phytochrome region BJD94_19685 PF00092 von Willebrand factor type A domain BJD94_19685 PF07584 Aerotolerance regulator N-terminal BJD94_19700 PF01882 Protein of unknown function DUF58 BJD94_19705 PF17863 AAA lid domain BJD94_19705 PF07726 ATPase family associated with various cellular activities (AAA) BJD94_19710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19710 PF00672 HAMP domain BJD94_19710 PF02743 Cache domain BJD94_19720 PF00196 Bacterial regulatory proteins, luxR family BJD94_19725 PF00196 Bacterial regulatory proteins, luxR family BJD94_19735 PF00664 ABC transporter transmembrane region BJD94_19735 PF00005 ABC transporter BJD94_19740 PF00529 HlyD membrane-fusion protein of T1SS BJD94_19755 PF00534 Glycosyl transferases group 1 BJD94_19755 PF13439 Glycosyltransferase Family 4 BJD94_19765 PF13439 Glycosyltransferase Family 4 BJD94_19765 PF00534 Glycosyl transferases group 1 BJD94_19770 PF02706 Chain length determinant protein BJD94_19770 PF13807 G-rich domain on putative tyrosine kinase BJD94_19770 PF13614 AAA domain BJD94_19775 PF02563 Polysaccharide biosynthesis/export protein BJD94_19775 PF10531 SLBB domain BJD94_19785 PF02397 Bacterial sugar transferase BJD94_19790 PF00005 ABC transporter BJD94_19790 PF08402 TOBE domain BJD94_19800 PF01547 Bacterial extracellular solute-binding protein BJD94_19805 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_19805 PF14785 Maltose transport system permease protein MalF P2 domain BJD94_19810 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_19840 PF05661 Protein of unknown function (DUF808) BJD94_19845 PF17151 Periplasmic sensor domain BJD94_19845 PF00990 Diguanylate cyclase, GGDEF domain BJD94_19850 PF01979 Amidohydrolase family BJD94_19855 PF03473 MOSC domain BJD94_19855 PF03473 MOSC domain BJD94_19855 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_19855 PF03476 MOSC N-terminal beta barrel domain BJD94_19855 PF03476 MOSC N-terminal beta barrel domain BJD94_19855 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD94_19860 PF02540 NAD synthase BJD94_19905 PF00005 ABC transporter BJD94_19910 PF01032 FecCD transport family BJD94_19920 PF02472 Biopolymer transport protein ExbD/TolR BJD94_19925 PF01618 MotA/TolQ/ExbB proton channel family BJD94_19930 PF03544 Gram-negative bacterial TonB protein C-terminal BJD94_19935 PF04055 Radical SAM superfamily BJD94_19940 PF06228 Haem utilisation ChuX/HutX BJD94_19945 PF01243 Pyridoxamine 5'-phosphate oxidase BJD94_19955 PF01584 CheW-like domain BJD94_19955 PF00072 Response regulator receiver domain BJD94_19975 PF00582 Universal stress protein family BJD94_19980 PF00128 Alpha amylase, catalytic domain BJD94_19985 PF00672 HAMP domain BJD94_19985 PF02743 Cache domain BJD94_19985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19990 PF00672 HAMP domain BJD94_19990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_19990 PF02743 Cache domain BJD94_20025 PF08525 Opacity-associated protein A N-terminal motif BJD94_20025 PF01551 Peptidase family M23 BJD94_20025 PF01476 LysM domain BJD94_20030 PF13419 Haloacid dehalogenase-like hydrolase BJD94_20045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD94_20045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD94_20070 PF07662 Na+ dependent nucleoside transporter C-terminus BJD94_20070 PF01773 Na+ dependent nucleoside transporter N-terminus BJD94_20070 PF07670 Nucleoside recognition BJD94_20085 PF00990 Diguanylate cyclase, GGDEF domain BJD94_20085 PF03707 Bacterial signalling protein N terminal repeat BJD94_20085 PF00563 EAL domain BJD94_20090 PF00672 HAMP domain BJD94_20090 PF12729 Four helix bundle sensory module for signal transduction BJD94_20090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_20105 PF00990 Diguanylate cyclase, GGDEF domain BJD94_20110 PF01641 SelR domain BJD94_20110 PF01625 Peptide methionine sulfoxide reductase BJD94_20115 PF02566 OsmC-like protein BJD94_20120 PF14602 Hexapeptide repeat of succinyl-transferase BJD94_20120 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BJD94_20120 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_20135 PF03466 LysR substrate binding domain BJD94_20135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_20140 PF13419 Haloacid dehalogenase-like hydrolase BJD94_20155 PF00672 HAMP domain BJD94_20155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_20165 PF00155 Aminotransferase class I and II BJD94_20170 PF12833 Helix-turn-helix domain BJD94_20170 PF01497 Periplasmic binding protein BJD94_20175 PF13419 Haloacid dehalogenase-like hydrolase BJD94_20185 PF00266 Aminotransferase class-V BJD94_20195 PF00005 ABC transporter BJD94_20200 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_20205 PF00392 Bacterial regulatory proteins, gntR family BJD94_20205 PF07702 UTRA domain BJD94_20215 PF01266 FAD dependent oxidoreductase BJD94_20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_20220 PF03466 LysR substrate binding domain BJD94_20230 PF00854 POT family BJD94_20235 PF03315 Serine dehydratase beta chain BJD94_20235 PF03313 Serine dehydratase alpha chain BJD94_20255 PF00768 D-alanyl-D-alanine carboxypeptidase BJD94_20255 PF07943 Penicillin-binding protein 5, C-terminal domain BJD94_20275 PF13977 BetI-type transcriptional repressor, C-terminal BJD94_20275 PF00440 Bacterial regulatory proteins, tetR family BJD94_20280 PF00171 Aldehyde dehydrogenase family BJD94_20285 PF05199 GMC oxidoreductase BJD94_20285 PF00732 GMC oxidoreductase BJD94_20290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BJD94_20295 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_20300 PF00571 CBS domain BJD94_20300 PF00005 ABC transporter BJD94_20305 PF04224 Protein of unknown function, DUF417 BJD94_20310 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BJD94_20310 PF00391 PEP-utilising enzyme, mobile domain BJD94_20310 PF02896 PEP-utilising enzyme, TIM barrel domain BJD94_20315 PF03618 Kinase/pyrophosphorylase BJD94_20335 PF04324 BFD-like [2Fe-2S] binding domain BJD94_20335 PF01266 FAD dependent oxidoreductase BJD94_20340 PF00890 FAD binding domain BJD94_20345 PF13183 4Fe-4S dicluster domain BJD94_20345 PF02754 Cysteine-rich domain BJD94_20360 PF02016 LD-carboxypeptidase N-terminal domain BJD94_20360 PF17676 LD-carboxypeptidase C-terminal domain BJD94_20365 PF07995 Glucose / Sorbosone dehydrogenase BJD94_20375 PF00465 Iron-containing alcohol dehydrogenase BJD94_20380 PF00012 Hsp70 protein BJD94_20385 PF00581 Rhodanese-like domain BJD94_20410 PF13533 Biotin-lipoyl like BJD94_20415 PF00873 AcrB/AcrD/AcrF family BJD94_20420 PF13194 Domain of unknown function (DUF4010) BJD94_20425 PF07504 Fungalysin/Thermolysin Propeptide Motif BJD94_20425 PF01447 Thermolysin metallopeptidase, catalytic domain BJD94_20425 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD94_20425 PF03413 Peptidase propeptide and YPEB domain BJD94_20445 PF03222 Tryptophan/tyrosine permease family BJD94_20450 PF00149 Calcineurin-like phosphoesterase BJD94_20460 PF02743 Cache domain BJD94_20460 PF00672 HAMP domain BJD94_20460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_20470 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BJD94_20470 PF18416 N-acetylglucosamine binding protein domain 2 BJD94_20475 PF00892 EamA-like transporter family BJD94_20490 PF01569 PAP2 superfamily BJD94_20500 PF03606 C4-dicarboxylate anaerobic carrier BJD94_20505 PF00171 Aldehyde dehydrogenase family BJD94_20510 PF01212 Beta-eliminating lyase BJD94_20520 PF17868 AAA lid domain BJD94_20520 PF07728 AAA domain (dynein-related subfamily) BJD94_20520 PF12592 Protein of unknown function (DUF3763) BJD94_20525 PF05762 VWA domain containing CoxE-like protein BJD94_20530 PF04237 YjbR BJD94_20545 PF05025 RbsD / FucU transport protein family BJD94_20550 PF00005 ABC transporter BJD94_20555 PF02653 Branched-chain amino acid transport system / permease component BJD94_20560 PF13407 Periplasmic binding protein domain BJD94_20565 PF00294 pfkB family carbohydrate kinase BJD94_20570 PF00356 Bacterial regulatory proteins, lacI family BJD94_20580 PF00072 Response regulator receiver domain BJD94_20580 PF01584 CheW-like domain BJD94_20590 PF00583 Acetyltransferase (GNAT) family BJD94_20595 PF01926 50S ribosome-binding GTPase BJD94_20600 PF00672 HAMP domain BJD94_20600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_20600 PF12729 Four helix bundle sensory module for signal transduction BJD94_20605 PF12320 Type 5 capsule protein repressor C-terminal domain BJD94_20605 PF00149 Calcineurin-like phosphoesterase BJD94_20610 PF13476 AAA domain BJD94_20620 PF03466 LysR substrate binding domain BJD94_20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_20640 PF04972 BON domain BJD94_20640 PF00263 Bacterial type II and III secretion system protein BJD94_20640 PF13629 Pilus formation protein N terminal region BJD94_20655 PF00437 Type II/IV secretion system protein BJD94_20725 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BJD94_20725 PF00989 PAS fold BJD94_20725 PF17203 Single cache domain 3 BJD94_20725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_20730 PF00072 Response regulator receiver domain BJD94_20730 PF12431 Transcriptional regulator BJD94_20735 PF12464 Maltose acetyltransferase BJD94_20735 PF00132 Bacterial transferase hexapeptide (six repeats) BJD94_20750 PF01032 FecCD transport family BJD94_20755 PF01032 FecCD transport family BJD94_20760 PF00005 ABC transporter BJD94_20765 PF13411 MerR HTH family regulatory protein BJD94_20795 PF12805 FUSC-like inner membrane protein yccS BJD94_20800 PF12462 DNA helicase IV / RNA helicase N terminal BJD94_20800 PF13361 UvrD-like helicase C-terminal domain BJD94_20800 PF00580 UvrD/REP helicase N-terminal domain BJD94_20805 PF02142 MGS-like domain BJD94_20810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BJD94_20815 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD94_20815 PF00672 HAMP domain BJD94_20815 PF00512 His Kinase A (phospho-acceptor) domain BJD94_20815 PF01627 Hpt domain BJD94_20815 PF00072 Response regulator receiver domain BJD94_20815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_20835 PF03781 Sulfatase-modifying factor enzyme 1 BJD94_20840 PF03264 NapC/NirT cytochrome c family, N-terminal region BJD94_20855 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BJD94_20860 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB BJD94_20865 PF00271 Helicase conserved C-terminal domain BJD94_20865 PF00270 DEAD/DEAH box helicase BJD94_20865 PF03880 DbpA RNA binding domain BJD94_20870 PF00512 His Kinase A (phospho-acceptor) domain BJD94_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_20870 PF00072 Response regulator receiver domain BJD94_20870 PF09456 RcsC Alpha-Beta-Loop (ABL) BJD94_20875 PF00990 Diguanylate cyclase, GGDEF domain BJD94_20875 PF00498 FHA domain BJD94_20875 PF00563 EAL domain BJD94_20890 PF00563 EAL domain BJD94_20890 PF00990 Diguanylate cyclase, GGDEF domain BJD94_20890 PF03707 Bacterial signalling protein N terminal repeat BJD94_20900 PF12849 PBP superfamily domain BJD94_20910 PF12833 Helix-turn-helix domain BJD94_20915 PF00575 S1 RNA binding domain BJD94_20915 PF00773 RNB domain BJD94_20915 PF08206 Ribonuclease B OB domain BJD94_20920 PF00271 Helicase conserved C-terminal domain BJD94_20920 PF00270 DEAD/DEAH box helicase BJD94_20920 PF03880 DbpA RNA binding domain BJD94_20925 PF00871 Acetokinase family BJD94_20930 PF00106 short chain dehydrogenase BJD94_20935 PF07690 Major Facilitator Superfamily BJD94_20940 PF03466 LysR substrate binding domain BJD94_20940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_20945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD94_20950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD94_20955 PF00107 Zinc-binding dehydrogenase BJD94_20955 PF08240 Alcohol dehydrogenase GroES-like domain BJD94_20960 PF00884 Sulfatase BJD94_20975 PF04055 Radical SAM superfamily BJD94_20975 PF13186 Iron-sulfur cluster-binding domain BJD94_20980 PF17863 AAA lid domain BJD94_20980 PF07726 ATPase family associated with various cellular activities (AAA) BJD94_20995 PF00092 von Willebrand factor type A domain BJD94_21010 PF03466 LysR substrate binding domain BJD94_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_21015 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BJD94_21020 PF03781 Sulfatase-modifying factor enzyme 1 BJD94_21025 PF13186 Iron-sulfur cluster-binding domain BJD94_21025 PF04055 Radical SAM superfamily BJD94_21035 PF08774 VRR-NUC domain BJD94_21035 PF18081 Fanconi anemia-associated nuclease SAP domain BJD94_21055 PF07690 Major Facilitator Superfamily BJD94_21060 PF13533 Biotin-lipoyl like BJD94_21075 PF03466 LysR substrate binding domain BJD94_21075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_21080 PF02627 Carboxymuconolactone decarboxylase family BJD94_21095 PF00795 Carbon-nitrogen hydrolase BJD94_21105 PF00664 ABC transporter transmembrane region BJD94_21105 PF00005 ABC transporter BJD94_21120 PF02347 Glycine cleavage system P-protein BJD94_21125 PF01597 Glycine cleavage H-protein BJD94_21130 PF00464 Serine hydroxymethyltransferase BJD94_21140 PF01571 Aminomethyltransferase folate-binding domain BJD94_21140 PF08669 Glycine cleavage T-protein C-terminal barrel domain BJD94_21165 PF00873 AcrB/AcrD/AcrF family BJD94_21175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD94_21175 PF02378 Phosphotransferase system, EIIC BJD94_21180 PF00294 pfkB family carbohydrate kinase BJD94_21185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD94_21185 PF00381 PTS HPr component phosphorylation site BJD94_21190 PF00356 Bacterial regulatory proteins, lacI family BJD94_21190 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BJD94_21215 PF00224 Pyruvate kinase, barrel domain BJD94_21215 PF02887 Pyruvate kinase, alpha/beta domain BJD94_21220 PF07690 Major Facilitator Superfamily BJD94_21230 PF02743 Cache domain BJD94_21230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_21230 PF00512 His Kinase A (phospho-acceptor) domain BJD94_21235 PF00072 Response regulator receiver domain BJD94_21235 PF02954 Bacterial regulatory protein, Fis family BJD94_21235 PF14532 Sigma-54 interaction domain BJD94_21240 PF00465 Iron-containing alcohol dehydrogenase BJD94_21245 PF06719 AraC-type transcriptional regulator N-terminus BJD94_21245 PF12833 Helix-turn-helix domain BJD94_21250 PF00704 Glycosyl hydrolases family 18 BJD94_21250 PF06483 Chitinase C BJD94_21255 PF00483 Nucleotidyl transferase BJD94_21260 PF01268 Formate--tetrahydrofolate ligase BJD94_21265 PF00294 pfkB family carbohydrate kinase BJD94_21280 PF11849 Domain of unknown function (DUF3369) BJD94_21285 PF13419 Haloacid dehalogenase-like hydrolase BJD94_21290 PF00672 HAMP domain BJD94_21290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_21295 PF04336 Acyl carrier protein phosphodiesterase BJD94_21300 PF00270 DEAD/DEAH box helicase BJD94_21300 PF00271 Helicase conserved C-terminal domain BJD94_21315 PF01292 Prokaryotic cytochrome b561 BJD94_21320 PF04264 YceI-like domain BJD94_21325 PF01226 Formate/nitrite transporter BJD94_21330 PF03466 LysR substrate binding domain BJD94_21330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_21335 PF06496 Protein of unknown function (DUF1097) BJD94_21340 PF11398 Protein of unknown function (DUF2813) BJD94_21345 PF00149 Calcineurin-like phosphoesterase BJD94_21345 PF02872 5'-nucleotidase, C-terminal domain BJD94_21350 PF03741 Integral membrane protein TerC family BJD94_21360 PF00892 EamA-like transporter family BJD94_21375 PF12262 Bacterial virulence factor lipase N-terminal BJD94_21380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD94_21395 PF03061 Thioesterase superfamily BJD94_21405 PF12793 Sugar transport-related sRNA regulator N-term BJD94_21405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD94_21415 PF00128 Alpha amylase, catalytic domain BJD94_21415 PF16657 Maltogenic Amylase, C-terminal domain BJD94_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_21420 PF03466 LysR substrate binding domain BJD94_21440 PF00684 DnaJ central domain BJD94_21440 PF01556 DnaJ C terminal domain BJD94_21440 PF00226 DnaJ domain BJD94_21455 PF00990 Diguanylate cyclase, GGDEF domain BJD94_21455 PF00498 FHA domain BJD94_21455 PF00563 EAL domain BJD94_21460 PF12241 Trans-2-enoyl-CoA reductase catalytic region BJD94_21460 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BJD94_21460 PF07055 Enoyl reductase FAD binding domain BJD94_21465 PF13472 GDSL-like Lipase/Acylhydrolase family BJD94_21470 PF00005 ABC transporter BJD94_21480 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BJD94_21480 PF01266 FAD dependent oxidoreductase BJD94_21485 PF02626 Carboxyltransferase domain, subdomain A and B BJD94_21490 PF02682 Carboxyltransferase domain, subdomain C and D BJD94_21495 PF03746 LamB/YcsF family BJD94_21505 PF00563 EAL domain BJD94_21505 PF05231 MASE1 BJD94_21505 PF00990 Diguanylate cyclase, GGDEF domain BJD94_21505 PF08447 PAS fold BJD94_21505 PF08448 PAS fold BJD94_21505 PF13426 PAS domain BJD94_21510 PF00593 TonB dependent receptor BJD94_21510 PF07715 TonB-dependent Receptor Plug Domain BJD94_21515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD94_21515 PF03466 LysR substrate binding domain BJD94_21520 PF13380 CoA binding domain BJD94_21520 PF13607 Succinyl-CoA ligase like flavodoxin domain BJD94_21520 PF00583 Acetyltransferase (GNAT) family BJD94_21525 PF05036 Sporulation related domain BJD94_21530 PF07478 D-ala D-ala ligase C-terminus BJD94_21530 PF01820 D-ala D-ala ligase N-terminus BJD94_21540 PF01253 Translation initiation factor SUI1 BJD94_21555 PF00072 Response regulator receiver domain BJD94_21555 PF00486 Transcriptional regulatory protein, C terminal BJD94_21565 PF02233 NAD(P) transhydrogenase beta subunit BJD94_21570 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BJD94_21570 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD94_21570 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BJD94_21585 PF00990 Diguanylate cyclase, GGDEF domain BJD94_21595 PF00486 Transcriptional regulatory protein, C terminal BJD94_21595 PF00072 Response regulator receiver domain BJD94_21605 PF01047 MarR family BJD94_21610 PF00892 EamA-like transporter family BJD94_21615 PF03459 TOBE domain BJD94_21615 PF00005 ABC transporter BJD94_21620 PF00528 Binding-protein-dependent transport system inner membrane component BJD94_21630 PF07685 CobB/CobQ-like glutamine amidotransferase domain BJD94_21630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD94_21645 PF18030 RimK PreATP-grasp domain BJD94_21645 PF08443 RimK-like ATP-grasp domain BJD94_21650 PF00155 Aminotransferase class I and II BJD94_21660 PF03477 ATP cone domain BJD94_21660 PF13597 Anaerobic ribonucleoside-triphosphate reductase BJD94_21670 PF00873 AcrB/AcrD/AcrF family BJD94_21685 PF04143 Sulphur transport BJD94_21700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD94_21700 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_21715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD94_21715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD94_21720 PF00085 Thioredoxin BJD94_21725 PF07690 Major Facilitator Superfamily BJD94_21730 PF12833 Helix-turn-helix domain BJD94_21735 PF01554 MatE BJD94_21740 PF11756 Nitrous oxide-stimulated promoter BJD94_21750 PF00672 HAMP domain BJD94_21750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_21750 PF17200 Single Cache domain 2 BJD94_21755 PF03605 Anaerobic c4-dicarboxylate membrane transporter BJD94_21770 PF02472 Biopolymer transport protein ExbD/TolR BJD94_21775 PF01618 MotA/TolQ/ExbB proton channel family BJD94_21780 PF01618 MotA/TolQ/ExbB proton channel family BJD94_21800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD94_21800 PF14824 Sirohaem biosynthesis protein central BJD94_21800 PF10414 Sirohaem synthase dimerisation region BJD94_21810 PF13806 Rieske-like [2Fe-2S] domain BJD94_21815 PF04324 BFD-like [2Fe-2S] binding domain BJD94_21815 PF18267 Rubredoxin NAD+ reductase C-terminal domain BJD94_21815 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD94_21815 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD94_21815 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD94_21820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD94_21820 PF00672 HAMP domain BJD94_21820 PF17200 Single Cache domain 2 BJD94_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD94_21845 PF00512 His Kinase A (phospho-acceptor) domain BJD94_21845 PF01627 Hpt domain BJD94_21845 PF00072 Response regulator receiver domain BJD94_21845 PF00672 HAMP domain BJD94_21845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD94_21850 PF01739 CheR methyltransferase, SAM binding domain BJD94_21850 PF03705 CheR methyltransferase, all-alpha domain BJD94_21855 PF01339 CheB methylesterase BJD94_21860 PF00990 Diguanylate cyclase, GGDEF domain BJD94_21860 PF01590 GAF domain BJD94_21860 PF00360 Phytochrome region BJD94_21860 PF00563 EAL domain BJD94_21870 PF00491 Arginase family BJD94_21875 PF00271 Helicase conserved C-terminal domain BJD94_21875 PF00270 DEAD/DEAH box helicase BJD94_21885 PF02492 CobW/HypB/UreG, nucleotide-binding domain BJD94_21885 PF07683 Cobalamin synthesis protein cobW C-terminal domain