locus-tag	class	description
BJD94_00005	COG2166	iron-sulfur cluster assembly
BJD94_00025	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD94_00040	COG1595	DNA-templated transcription, initiation
BJD94_00050	COG2211	Major facilitator Superfamily
BJD94_00070	COG0271	Belongs to the BolA IbaG family
BJD94_00105	COG1477	protein flavinylation
BJD94_00115	COG0745	RESPONSE REGULATOR receiver
BJD94_00115	COG3706	GGDEF domain
BJD94_00125	COG0514	ATP-dependent DNA helicase (RecQ)
BJD94_00140	COG0733	neurotransmitter:sodium symporter activity
BJD94_00165	COG1720	tRNA m6t6A37 methyltransferase activity
BJD94_00170	COG0254	rRNA binding
BJD94_00180	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BJD94_00185	COG1671	Belongs to the UPF0178 family
BJD94_00210	COG3098	single-species biofilm formation
BJD94_00225	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD94_00230	COG0024	Methionine aminopeptidase
BJD94_00250	COG0233	cytoplasmic translational termination
BJD94_00260	COG0575	Belongs to the CDS family
BJD94_00270	COG0750	zinc metalloprotease
BJD94_00275	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_00280	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
BJD94_00310	COG0587	DNA-directed DNA polymerase activity
BJD94_00330	COG0347	Belongs to the P(II) protein family
BJD94_00335	COG3021	interspecies interaction between organisms
BJD94_00345	COG1388	LysM domain
BJD94_00345	COG0741	lytic transglycosylase activity
BJD94_00350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD94_00355	COG2226	methyltransferase
BJD94_00365	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD94_00375	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD94_00400	COG1960	acyl-CoA dehydrogenase activity
BJD94_00410	COG0121	glutamine amidotransferase
BJD94_00415	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD94_00425	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD94_00430	COG2233	PERMEase
BJD94_00450	COG1393	Belongs to the ArsC family
BJD94_00455	COG4783	chaperone-mediated protein folding
BJD94_00470	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD94_00475	COG2716	regulation of RNA biosynthetic process
BJD94_00480	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD94_00505	COG1393	Belongs to the ArsC family
BJD94_00530	COG2837	iron assimilation
BJD94_00535	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_00540	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_00545	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_00550	COG1334	flagellar protein FlaG
BJD94_00555	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD94_00565	COG1516	flagellar protein fliS
BJD94_00570	COG2204	response regulator
BJD94_00575	COG4191	Histidine kinase
BJD94_00580	COG2204	response regulator
BJD94_00585	COG1677	Flagellar hook-basal body complex protein FliE
BJD94_00595	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BJD94_00645	COG1987	bacterial-type flagellum assembly
BJD94_00650	COG1684	flagellar biosynthetic protein fliR
BJD94_00670	COG0455	bacterial-type flagellum organization
BJD94_00685	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
BJD94_00690	COG0643	Histidine kinase
BJD94_00690	COG2198	Histidine kinase
BJD94_00700	COG1192	Involved in chromosome partitioning
BJD94_00710	COG0835	chemotaxis
BJD94_00720	COG4133	protoheme IX ABC transporter activity
BJD94_00725	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_00730	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_00735	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_00745	COG1138	Cytochrome C-type biogenesis protein
BJD94_00750	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_00755	COG4235	cytochrome complex assembly
BJD94_00755	COG3088	subunit of a heme lyase
BJD94_00765	COG2853	Lipoprotein
BJD94_00770	COG2067	long-chain fatty acid transport protein
BJD94_00775	COG2067	long-chain fatty acid transport protein
BJD94_00800	COG1025	Belongs to the peptidase M16 family
BJD94_00805	COG2062	phosphohistidine phosphatase, SixA
BJD94_00810	COG2840	Smr protein MutS2
BJD94_00815	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD94_00825	COG2860	membrane
BJD94_00830	COG3101	peptidyl-lysine hydroxylation
BJD94_00845	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD94_00855	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD94_00875	COG0285	dihydrofolate synthase activity
BJD94_00880	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
BJD94_00885	COG1286	toxin biosynthetic process
BJD94_00890	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BJD94_00895	COG0583	DNA-binding transcription factor activity
BJD94_00900	COG0745	RESPONSE REGULATOR receiver
BJD94_00915	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD94_00935	COG2205	protein histidine kinase activity
BJD94_00940	COG0745	RESPONSE REGULATOR receiver
BJD94_00955	COG2983	Belongs to the UPF0260 family
BJD94_00965	COG0346	lactoylglutathione lyase activity
BJD94_00975	COG1785	Belongs to the alkaline phosphatase family
BJD94_00990	COG2226	methyltransferase
BJD94_01010	COG2199	diguanylate cyclase activity
BJD94_01010	COG2203	Gaf domain
BJD94_01025	COG3710	Transcriptional regulator
BJD94_01030	COG0531	amino acid
BJD94_01035	COG1982	Orn Lys Arg decarboxylase major
BJD94_01040	COG3706	GGDEF domain
BJD94_01045	COG4109	DRTGG domain
BJD94_01070	COG0537	adenosine 5'-monophosphoramidase activity
BJD94_01100	COG1252	NADH dehydrogenase
BJD94_01115	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD94_01125	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_01135	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_01145	COG2333	competence protein COMEC
BJD94_01145	COG0658	competence protein
BJD94_01155	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD94_01165	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD94_01170	COG2199	diguanylate cyclase activity
BJD94_01175	COG2719	SpoVR family
BJD94_01180	COG2718	Belongs to the UPF0229 family
BJD94_01185	COG2766	serine protein kinase
BJD94_01200	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BJD94_01215	COG1882	Formate acetyltransferase
BJD94_01240	COG4215	(ABC) transporter
BJD94_01255	COG0708	Exodeoxyribonuclease III
BJD94_01260	COG0840	transmembrane signaling receptor activity
BJD94_01270	COG3923	Primosomal replication protein n
BJD94_01280	COG1199	ATP-dependent helicase activity
BJD94_01300	COG1278	Cold shock
BJD94_01310	COG0542	response to heat
BJD94_01315	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD94_01320	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD94_01335	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD94_01345	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD94_01350	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BJD94_01375	COG3070	regulator of competence-specific genes
BJD94_01390	COG0745	RESPONSE REGULATOR receiver
BJD94_01395	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BJD94_01400	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD94_01405	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
BJD94_01415	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
BJD94_01445	COG4067	protein conserved in archaea
BJD94_01445	COG0189	ligase activity
BJD94_01455	COG4106	trans-aconitate 2-methyltransferase activity
BJD94_01480	COG2255	four-way junction helicase activity
BJD94_01485	COG1271	oxidase subunit
BJD94_01490	COG1294	oxidase, subunit
BJD94_01495	COG4890	Cyd operon protein YbgT
BJD94_01505	COG0824	Thioesterase
BJD94_01510	COG0811	peptide transport
BJD94_01525	COG0823	Involved in the tonB-independent uptake of proteins
BJD94_01530	COG2885	chlorophyll binding
BJD94_01535	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
BJD94_01540	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BJD94_01550	COG3766	membrane
BJD94_01560	COG0754	glutathionylspermidine amidase activity
BJD94_01570	COG0784	Response regulator, receiver
BJD94_01570	COG2205	protein histidine kinase activity
BJD94_01640	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BJD94_01645	COG4804	nuclease activity
BJD94_01650	COG0732	type I restriction modification DNA specificity domain
BJD94_01660	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD94_01675	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BJD94_01690	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_01695	COG0840	transmembrane signaling receptor activity
BJD94_01700	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD94_01705	COG0861	Integral membrane protein TerC family
BJD94_01720	COG2207	Transcriptional regulator
BJD94_01740	COG1032	radical SAM domain protein
BJD94_01765	COG0583	DNA-binding transcription factor activity
BJD94_01770	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BJD94_01775	COG0280	phosphate acetyltransferase
BJD94_01775	COG0857	belongs to the CobB CobQ family
BJD94_01785	COG3092	negative regulation of chromosome organization
BJD94_01795	COG4120	Belongs to the binding-protein-dependent transport system permease family
BJD94_01805	COG0366	Alpha amylase catalytic
BJD94_01810	COG0745	RESPONSE REGULATOR receiver
BJD94_01810	COG3706	GGDEF domain
BJD94_01820	COG0653	protein targeting
BJD94_01830	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BJD94_01865	COG2989	Protein conserved in bacteria
BJD94_01870	COG3108	Peptidase M15
BJD94_01875	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD94_01890	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
BJD94_01915	COG1846	Transcriptional regulator
BJD94_01920	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD94_01925	COG0840	transmembrane signaling receptor activity
BJD94_01945	COG1448	Aminotransferase
BJD94_01950	COG3437	response regulator, receiver
BJD94_01950	COG2770	Histidine kinase
BJD94_01970	COG0840	transmembrane signaling receptor activity
BJD94_01975	COG0720	synthase
BJD94_01985	COG2200	EAL domain
BJD94_01990	COG1760	l-serine dehydratase
BJD94_01995	COG0814	amino acid
BJD94_02000	COG0494	nUDIX hydrolase
BJD94_02030	COG3106	COG3106 Predicted ATPase
BJD94_02035	COG3768	UPF0283 membrane protein
BJD94_02040	COG3283	Transcriptional regulator of aromatic amino acids metabolism
BJD94_02045	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_02060	COG0471	metal ion transport
BJD94_02065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_02065	COG4191	Histidine kinase
BJD94_02080	COG2200	EAL domain
BJD94_02080	COG2199	diguanylate cyclase activity
BJD94_02095	COG3300	MHYT domain
BJD94_02095	COG5001	Diguanylate cyclase
BJD94_02100	COG1328	CTP reductase activity
BJD94_02105	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BJD94_02110	COG0583	DNA-binding transcription factor activity
BJD94_02125	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_02130	COG4667	esterase of the alpha-beta hydrolase superfamily
BJD94_02140	COG1597	lipid kinase activity
BJD94_02145	COG0814	amino acid
BJD94_02160	COG0783	Belongs to the Dps family
BJD94_02175	COG1132	(ABC) transporter
BJD94_02180	COG1132	(ABC) transporter
BJD94_02185	COG1115	amino acid carrier protein
BJD94_02200	COG1596	polysaccharide export
BJD94_02225	COG0438	transferase activity, transferring glycosyl groups
BJD94_02230	COG0438	transferase activity, transferring glycosyl groups
BJD94_02230	COG0297	glycogen (starch) synthase activity
BJD94_02270	COG0443	Heat shock 70 kDa protein
BJD94_02275	COG0443	Heat shock 70 kDa protein
BJD94_02285	COG3706	GGDEF domain
BJD94_02305	COG3713	MltA-interacting MipA family protein
BJD94_02335	COG4964	Belongs to the GSP D family
BJD94_02345	COG2894	cell division
BJD94_02385	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD94_02395	COG1643	Atp-dependent helicase
BJD94_02420	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BJD94_02425	COG5380	lipid catabolic process
BJD94_02430	COG2814	Major facilitator Superfamily
BJD94_02435	COG0010	Belongs to the arginase family
BJD94_02500	COG0745	RESPONSE REGULATOR receiver
BJD94_02500	COG3706	GGDEF domain
BJD94_02510	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_02510	COG0072	phenylalanine-tRNA ligase activity
BJD94_02550	COG0295	cytidine deaminase activity
BJD94_02565	COG2885	chlorophyll binding
BJD94_02580	COG0247	lactate metabolic process
BJD94_02580	COG0277	FAD linked oxidase domain protein
BJD94_02585	COG2020	methyltransferase activity
BJD94_02590	COG5640	endopeptidase activity
BJD94_02605	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD94_02615	COG1228	amidohydrolase
BJD94_02625	COG4326	sporulation control protein
BJD94_02720	COG4628	conserved protein (DUF2132)
BJD94_02795	COG0346	lactoylglutathione lyase activity
BJD94_02905	COG0346	lactoylglutathione lyase activity
BJD94_03005	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
BJD94_03010	COG2944	sequence-specific DNA binding
BJD94_03035	COG0456	acetyltransferase
BJD94_03035	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BJD94_03075	COG0384	phenazine biosynthesis protein PhzF
BJD94_03220	COG2161	toxin-antitoxin pair type II binding
BJD94_03225	COG4115	mRNA cleavage
BJD94_03265	COG0346	lactoylglutathione lyase activity
BJD94_03335	COG4628	conserved protein (DUF2132)
BJD94_03435	COG4628	conserved protein (DUF2132)
BJD94_03540	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_03595	COG2226	methyltransferase
BJD94_03745	COG0534	Mate efflux family protein
BJD94_03750	COG0307	riboflavin synthase, alpha
BJD94_03770	COG3706	GGDEF domain
BJD94_03780	COG0791	NLP P60 protein
BJD94_03785	COG0840	transmembrane signaling receptor activity
BJD94_03815	COG0746	molybdenum cofactor guanylyltransferase activity
BJD94_03820	COG3842	ATPase activity
BJD94_03825	COG4662	Binding-protein-dependent transport system inner membrane component
BJD94_03835	COG2204	response regulator
BJD94_03840	COG3852	Histidine kinase
BJD94_03855	COG0488	(ABC) transporter
BJD94_03860	COG0840	transmembrane signaling receptor activity
BJD94_03895	COG3383	formate dehydrogenase (NAD+) activity
BJD94_03895	COG0243	molybdopterin cofactor binding
BJD94_03900	COG0437	4 iron, 4 sulfur cluster binding
BJD94_03930	COG0004	ammonium transporteR
BJD94_03935	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD94_03940	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD94_03945	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD94_03950	COG1177	transmembrane transport
BJD94_03955	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD94_03970	COG2992	FlgJ-related protein
BJD94_03985	COG0589	response to stress
BJD94_03990	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_04005	COG2217	Heavy metal translocating P-type atpase
BJD94_04015	COG2010	Cytochrome c
BJD94_04030	COG3278	Belongs to the heme-copper respiratory oxidase family
BJD94_04065	COG3120	sequence-specific DNA binding
BJD94_04070	COG1067	ATP-dependent peptidase activity
BJD94_04090	COG0488	(ABC) transporter
BJD94_04100	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD94_04100	COG0116	Belongs to the methyltransferase superfamily
BJD94_04115	COG2902	Dehydrogenase
BJD94_04120	COG0308	aminopeptidase N
BJD94_04140	COG1956	GAF domain-containing protein
BJD94_04145	COG1132	(ABC) transporter
BJD94_04150	COG2995	paraquat-inducible protein a
BJD94_04155	COG3008	intermembrane lipid transfer
BJD94_04165	COG2996	Protein conserved in bacteria
BJD94_04180	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_04190	COG3706	GGDEF domain
BJD94_04195	COG1793	dna ligase
BJD94_04200	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD94_04230	COG2204	response regulator
BJD94_04275	COG0438	transferase activity, transferring glycosyl groups
BJD94_04285	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD94_04315	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BJD94_04320	COG0363	glucosamine-6-phosphate deaminase activity
BJD94_04325	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD94_04330	COG4565	transcriptional regulatory protein
BJD94_04335	COG3290	protein histidine kinase activity
BJD94_04350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD94_04375	COG1115	amino acid carrier protein
BJD94_04390	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BJD94_04395	COG0204	Acyl-transferase
BJD94_04400	COG0348	domain, Protein
BJD94_04405	COG0437	4 iron, 4 sulfur cluster binding
BJD94_04415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_04420	COG4597	amino acid ABC transporter
BJD94_04425	COG0765	amino acid transport
BJD94_04430	COG1126	abc transporter atp-binding protein
BJD94_04435	COG0670	Belongs to the BI1 family
BJD94_04445	COG2920	part of a sulfur-relay system
BJD94_04460	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD94_04490	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD94_04495	COG0602	queuosine metabolic process
BJD94_04500	COG0561	phosphatase activity
BJD94_04530	COG2828	Protein conserved in bacteria
BJD94_04535	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BJD94_04540	COG0372	Belongs to the citrate synthase family
BJD94_04545	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BJD94_04590	COG2197	response regulator
BJD94_04595	COG0730	response to heat
BJD94_04605	COG1653	transport
BJD94_04610	COG1175	transmembrane transport
BJD94_04615	COG0395	ABC-type sugar transport system, permease component
BJD94_04620	COG3842	ATPase activity
BJD94_04625	COG1349	DNA-binding transcription factor activity
BJD94_04630	COG0584	glycerophosphoryl diester phosphodiesterase
BJD94_04635	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD94_04645	COG1278	Cold shock
BJD94_04685	COG0625	glutathione transferase activity
BJD94_04695	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD94_04705	COG2195	Cleaves the N-terminal amino acid of tripeptides
BJD94_04710	COG0737	Belongs to the 5'-nucleotidase family
BJD94_04715	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
BJD94_04720	COG3063	Type IV pilus biogenesis stability protein PilW
BJD94_04735	COG1451	nucleotide metabolic process
BJD94_04745	COG0583	DNA-binding transcription factor activity
BJD94_04765	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
BJD94_04820	COG2925	Exonuclease
BJD94_04825	COG1380	Effector of murein hydrolase LrgA
BJD94_04830	COG1346	cytolysis
BJD94_04855	COG1643	Atp-dependent helicase
BJD94_04860	COG0281	malic enzyme
BJD94_04865	COG2949	membrane
BJD94_04870	COG0471	metal ion transport
BJD94_04875	COG3706	GGDEF domain
BJD94_04875	COG0745	RESPONSE REGULATOR receiver
BJD94_04895	COG0492	ferredoxin-NADP+ reductase activity
BJD94_04900	COG4988	ABC transporter
BJD94_04905	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD94_04920	COG5002	protein histidine kinase activity
BJD94_04920	COG5002	protein histidine kinase activity
BJD94_04935	COG3070	regulator of competence-specific genes
BJD94_04945	COG2431	L-lysine efflux transmembrane transporter activity
BJD94_04955	COG0076	glutamate decarboxylase activity
BJD94_04960	COG1737	Transcriptional regulator
BJD94_04965	COG1979	alcohol dehydrogenase
BJD94_04970	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BJD94_04975	COG2985	domain, Protein
BJD94_04975	COG3273	potassium ion transport
BJD94_04980	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD94_05010	COG1136	(ABC) transporter
BJD94_05015	COG0702	epimerase
BJD94_05025	COG2814	Major facilitator Superfamily
BJD94_05035	COG1061	Type III restriction enzyme res subunit
BJD94_05045	COG0745	RESPONSE REGULATOR receiver
BJD94_05050	COG2205	protein histidine kinase activity
BJD94_05085	COG3313	Fe-S protein
BJD94_05095	COG4134	Bacterial extracellular solute-binding protein
BJD94_05100	COG4135	transport system, permease component
BJD94_05105	COG4136	ATPase activity
BJD94_05110	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD94_05115	COG3604	Transcriptional regulator
BJD94_05120	COG1151	hydroxylamine reductase activity
BJD94_05125	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BJD94_05135	COG0564	pseudouridine synthase activity
BJD94_05145	COG0733	neurotransmitter:sodium symporter activity
BJD94_05155	COG0626	cystathionine gamma-synthase activity
BJD94_05160	COG2818	Glycosylase
BJD94_05180	COG1983	PspC domain protein
BJD94_05190	COG1842	Phage shock protein A
BJD94_05195	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BJD94_05205	COG4168	peptide transport system, permease
BJD94_05210	COG4171	peptide transport system, permease
BJD94_05220	COG4172	Belongs to the ABC transporter superfamily
BJD94_05240	COG1227	inorganic diphosphatase activity
BJD94_05270	COG0243	molybdopterin cofactor binding
BJD94_05275	COG3005	denitrification pathway
BJD94_05280	COG4459	periplasmic nitrate reductase
BJD94_05285	COG0390	transport system, permease component
BJD94_05290	COG2116	formate transmembrane transporter activity
BJD94_05310	COG0583	DNA-binding transcription factor activity
BJD94_05315	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD94_05325	COG1435	thymidine kinase activity
BJD94_05335	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD94_05340	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD94_05345	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BJD94_05350	COG3012	SEC-C Motif Domain Protein
BJD94_05380	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD94_05385	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD94_05395	COG1757	Na H antiporter
BJD94_05400	COG2916	Histone family protein nucleoid-structuring protein H-NS
BJD94_05405	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_05415	COG0482	sulfurtransferase activity
BJD94_05425	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BJD94_05445	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD94_05460	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_05470	COG0501	Belongs to the peptidase M48B family
BJD94_05505	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD94_05525	COG0686	Belongs to the AlaDH PNT family
BJD94_05535	COG0583	DNA-binding transcription factor activity
BJD94_05570	COG4166	transmembrane transport
BJD94_05575	COG4239	(ABC) transporter, permease
BJD94_05580	COG4174	ABC transporter (Permease)
BJD94_05585	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD94_05590	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD94_05595	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
BJD94_05605	COG0539	negative regulation of cytoplasmic translation
BJD94_05615	COG0616	signal peptide processing
BJD94_05620	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_05635	COG0587	DNA-directed DNA polymerase activity
BJD94_05640	COG0835	chemotaxis
BJD94_05640	COG0784	Response regulator, receiver
BJD94_05645	COG1940	carbohydrate kinase activity
BJD94_05650	COG0469	pyruvate kinase activity
BJD94_05655	COG4667	esterase of the alpha-beta hydrolase superfamily
BJD94_05665	COG0733	neurotransmitter:sodium symporter activity
BJD94_05675	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_05675	COG1263	PTS System
BJD94_05680	COG0084	hydrolase, TatD family'
BJD94_05695	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD94_05725	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD94_05740	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD94_05755	COG1530	ribonuclease E activity
BJD94_05760	COG0659	secondary active sulfate transmembrane transporter activity
BJD94_05765	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD94_05770	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
BJD94_05785	COG0489	protein tyrosine kinase activity
BJD94_05790	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_05790	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_05800	COG3088	subunit of a heme lyase
BJD94_05805	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_05810	COG1138	Cytochrome C-type biogenesis protein
BJD94_05815	COG3301	Polysulphide reductase, NrfD
BJD94_05820	COG0437	4 iron, 4 sulfur cluster binding
BJD94_05825	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
BJD94_05860	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD94_05865	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD94_05935	COG2197	response regulator
BJD94_05940	COG0417	DNA replication proofreading
BJD94_05945	COG5001	Diguanylate cyclase
BJD94_05975	COG0009	L-threonylcarbamoyladenylate synthase
BJD94_05980	COG0613	PHP domain protein
BJD94_05990	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD94_05995	COG0512	Glutamine amidotransferase of anthranilate synthase
BJD94_06000	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD94_06005	COG0134	indole-3-glycerol-phosphate synthase activity
BJD94_06005	COG0135	phosphoribosylanthranilate isomerase activity
BJD94_06020	COG1301	dicarboxylic acid transport
BJD94_06035	COG1607	acyl-coa hydrolase
BJD94_06040	COG2350	Protein conserved in bacteria
BJD94_06050	COG0435	Glutathione S-transferase
BJD94_06060	COG0444	Belongs to the ABC transporter superfamily
BJD94_06065	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_06070	COG0601	transmembrane transport
BJD94_06080	COG0314	molybdopterin synthase activity
BJD94_06085	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD94_06090	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD94_06095	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD94_06105	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BJD94_06145	COG4656	Part of a membrane complex involved in electron transport
BJD94_06155	COG4659	FMN binding
BJD94_06165	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD94_06170	COG0346	lactoylglutathione lyase activity
BJD94_06180	COG2885	chlorophyll binding
BJD94_06185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD94_06190	COG2056	Na+-H+ antiporter family
BJD94_06200	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD94_06215	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_06220	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_06220	COG1454	alcohol dehydrogenase
BJD94_06225	COG2095	MarC family integral membrane protein
BJD94_06230	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_06240	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD94_06245	COG1757	Na H antiporter
BJD94_06260	COG3081	Nucleoid-associated protein
BJD94_06265	COG3082	Protein of unknown function (DUF1414)
BJD94_06270	COG3083	sulfuric ester hydrolase activity
BJD94_06280	COG0569	domain protein
BJD94_06285	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_06290	COG2731	YhcH YjgK YiaL family protein
BJD94_06295	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD94_06300	COG0745	RESPONSE REGULATOR receiver
BJD94_06300	COG3706	GGDEF domain
BJD94_06310	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD94_06315	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD94_06320	COG0778	Nitroreductase
BJD94_06325	COG1902	pentaerythritol trinitrate reductase activity
BJD94_06325	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD94_06330	COG0616	signal peptide processing
BJD94_06335	COG0252	asparaginase activity
BJD94_06340	COG3139	Protein of unknown function (DUF1315)
BJD94_06355	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_06395	COG0330	HflC and HflK could
BJD94_06425	COG3126	Type III secretion system lipoprotein chaperone (YscW)
BJD94_06430	COG1946	Acyl-CoA thioesterase
BJD94_06440	COG1522	sequence-specific DNA binding
BJD94_06445	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BJD94_06475	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_06535	COG0318	PFAM AMP-dependent synthetase and ligase
BJD94_06540	COG1441	menaquinone biosynthetic process
BJD94_06545	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BJD94_06550	COG0596	Alpha beta hydrolase
BJD94_06560	COG1169	isochorismate synthase
BJD94_06565	COG0436	Aminotransferase
BJD94_06570	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD94_06590	COG1555	photosystem II stabilization
BJD94_06595	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD94_06600	COG0776	regulation of translation
BJD94_06605	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BJD94_06625	COG4191	Histidine kinase
BJD94_06630	COG2204	response regulator
BJD94_06635	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
BJD94_06640	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
BJD94_06645	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD94_06655	COG3842	ATPase activity
BJD94_06680	COG0745	RESPONSE REGULATOR receiver
BJD94_06685	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD94_06730	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD94_06755	COG2986	histidine ammonia-lyase
BJD94_06780	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD94_06790	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_06805	COG5002	protein histidine kinase activity
BJD94_06810	COG0745	RESPONSE REGULATOR receiver
BJD94_06820	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_06830	COG2951	lytic endotransglycosylase activity
BJD94_06845	COG2894	cell division
BJD94_06855	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
BJD94_06865	COG0596	Alpha beta hydrolase
BJD94_06880	COG1214	PFAM Peptidase M22, glycoprotease
BJD94_06885	COG1199	ATP-dependent helicase activity
BJD94_06895	COG0788	formyltetrahydrofolate deformylase activity
BJD94_06900	COG3102	Protein conserved in bacteria
BJD94_06920	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
BJD94_06925	COG1918	ferrous iron import across plasma membrane
BJD94_06935	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BJD94_06945	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BJD94_06960	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD94_06965	COG0567	Dehydrogenase, E1 component
BJD94_06975	COG1053	succinate dehydrogenase
BJD94_06980	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD94_06995	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BJD94_07005	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD94_07020	COG2964	Protein conserved in bacteria
BJD94_07025	COG0033	Phosphoglucomutase
BJD94_07030	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
BJD94_07035	COG0596	Alpha beta hydrolase
BJD94_07045	COG0716	FMN binding
BJD94_07060	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD94_07065	COG1263	PTS System
BJD94_07065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_07070	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD94_07075	COG1940	carbohydrate kinase activity
BJD94_07075	COG1846	Transcriptional regulator
BJD94_07080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD94_07080	COG4651	solute:proton antiporter activity
BJD94_07085	COG0367	asparagine synthase
BJD94_07095	COG3104	oligopeptide transport
BJD94_07105	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD94_07115	COG0326	Molecular chaperone. Has ATPase activity
BJD94_07120	COG3710	Transcriptional regulator
BJD94_07140	COG0622	Phosphoesterase
BJD94_07165	COG1090	epimerase
BJD94_07170	COG0300	oxidoreductase activity
BJD94_07175	COG3118	belongs to the thioredoxin family
BJD94_07180	COG0330	HflC and HflK could
BJD94_07210	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
BJD94_07215	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BJD94_07220	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_07225	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD94_07230	COG2190	(PTS) system
BJD94_07235	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_07240	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_07250	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_07255	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_07265	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD94_07265	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD94_07280	COG4786	Flagellar basal body rod
BJD94_07285	COG4787	bacterial-type flagellum-dependent cell motility
BJD94_07290	COG1749	Flagellar hook protein flgE
BJD94_07295	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD94_07300	COG1558	bacterial-type flagellum-dependent cell motility
BJD94_07305	COG1815	bacterial-type flagellum-dependent cell motility
BJD94_07310	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_07315	COG0784	Response regulator, receiver
BJD94_07315	COG0835	chemotaxis
BJD94_07375	COG2608	mercury ion transmembrane transporter activity
BJD94_07375	COG2217	Heavy metal translocating P-type atpase
BJD94_07390	COG3735	TraB family
BJD94_07410	COG2840	Smr protein MutS2
BJD94_07415	COG1187	pseudouridine synthase activity
BJD94_07445	COG2912	Transglutaminase-like superfamily
BJD94_07450	COG3094	Invasion gene expression up-regulator, SirB
BJD94_07455	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD94_07570	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_07575	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD94_07580	COG1702	phosphate starvation-inducible protein PhoH
BJD94_07585	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD94_07590	COG4535	Mg2 and Co2 transporter CorC
BJD94_07600	COG2888	peptidyl-tyrosine sulfation
BJD94_07605	COG0495	leucyl-tRNA aminoacylation
BJD94_07610	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
BJD94_07615	COG1466	dna polymerase III delta subunit
BJD94_07620	COG0799	negative regulation of ribosome biogenesis
BJD94_07630	COG0768	penicillin binding
BJD94_07635	COG0772	Belongs to the SEDS family
BJD94_07640	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD94_07645	COG1686	Belongs to the peptidase S11 family
BJD94_07655	COG0321	lipoyl(octanoyl) transferase activity
BJD94_07700	COG0366	Alpha amylase catalytic
BJD94_07705	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_07705	COG1263	PTS System
BJD94_07715	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD94_07720	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD94_07725	COG2011	ABC-type metal ion transport system permease component
BJD94_07730	COG1464	Belongs to the NlpA lipoprotein family
BJD94_07735	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
BJD94_07755	COG3706	GGDEF domain
BJD94_07760	COG1611	Belongs to the LOG family
BJD94_07765	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_07780	COG2363	Small membrane protein
BJD94_07790	COG0583	DNA-binding transcription factor activity
BJD94_07805	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD94_07815	COG0142	geranyltranstransferase activity
BJD94_07825	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BJD94_07830	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD94_07855	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD94_07855	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD94_07860	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD94_07890	COG2252	PERMEase
BJD94_07930	COG0590	tRNA wobble adenosine to inosine editing
BJD94_07935	COG0583	DNA-binding transcription factor activity
BJD94_07940	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD94_07945	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BJD94_07950	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BJD94_08015	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD94_08020	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD94_08025	COG0497	DNA recombination
BJD94_08030	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_08040	COG2867	negative regulation of translational initiation
BJD94_08085	COG0009	L-threonylcarbamoyladenylate synthase
BJD94_08105	COG0583	DNA-binding transcription factor activity
BJD94_08115	COG1115	amino acid carrier protein
BJD94_08120	COG1584	GPR1 FUN34 yaaH family protein
BJD94_08130	COG0519	Catalyzes the synthesis of GMP from XMP
BJD94_08130	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD94_08135	COG0516	GMP reductase activity
BJD94_08135	COG0517	IMP dehydrogenase activity
BJD94_08140	COG1570	exodeoxyribonuclease VII activity
BJD94_08150	COG2203	Gaf domain
BJD94_08150	COG2199	diguanylate cyclase activity
BJD94_08165	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_08185	COG1426	Protein conserved in bacteria
BJD94_08205	COG2975	iron-sulfur cluster assembly
BJD94_08210	COG0633	Ferredoxin
BJD94_08215	COG0443	Heat shock 70 kDa protein
BJD94_08230	COG0822	iron-sulfur transferase activity
BJD94_08245	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
BJD94_08250	COG0483	inositol monophosphate 1-phosphatase activity
BJD94_08265	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_08270	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_08275	COG1862	Preprotein translocase
BJD94_08285	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD94_08295	COG0517	IMP dehydrogenase activity
BJD94_08305	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD94_08310	COG0583	DNA-binding transcription factor activity
BJD94_08315	COG0450	alkyl hydroperoxide reductase
BJD94_08330	COG0704	Plays a role in the regulation of phosphate uptake
BJD94_08340	COG0581	inorganic phosphate transmembrane transporter activity
BJD94_08345	COG0573	inorganic phosphate transmembrane transporter activity
BJD94_08350	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD94_08355	COG0248	Ppx GppA phosphatase
BJD94_08365	COG5002	protein histidine kinase activity
BJD94_08370	COG0745	RESPONSE REGULATOR receiver
BJD94_08385	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD94_08440	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_08450	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BJD94_08455	COG0077	Prephenate dehydratase
BJD94_08455	COG1605	Chorismate mutase
BJD94_08460	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
BJD94_08475	COG0488	(ABC) transporter
BJD94_08485	COG0739	heme binding
BJD94_08490	COG0287	Prephenate dehydrogenase
BJD94_08490	COG1605	Chorismate mutase
BJD94_08495	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_08500	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD94_08505	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD94_08520	COG1966	Carbon starvation protein
BJD94_08525	COG3275	phosphorelay sensor kinase activity
BJD94_08540	COG1047	Peptidyl-prolyl cis-trans
BJD94_08550	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD94_08555	COG0196	riboflavin kinase activity
BJD94_08560	COG0728	peptidoglycan biosynthetic process
BJD94_08570	COG0640	Transcriptional regulator
BJD94_08575	COG0583	DNA-binding transcription factor activity
BJD94_08580	COG1283	sodium-dependent phosphate transmembrane transporter activity
BJD94_08600	COG0730	response to heat
BJD94_08625	COG0667	Aldo Keto reductase
BJD94_08640	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD94_08645	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD94_08650	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD94_08655	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_08665	COG0716	FMN binding
BJD94_08680	COG0513	Belongs to the DEAD box helicase family
BJD94_08685	COG3022	response to hydroperoxide
BJD94_08690	COG1115	amino acid carrier protein
BJD94_08720	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD94_08750	COG0745	RESPONSE REGULATOR receiver
BJD94_08760	COG0784	Response regulator, receiver
BJD94_08760	COG2198	Histidine kinase
BJD94_08760	COG5002	protein histidine kinase activity
BJD94_08765	COG3706	GGDEF domain
BJD94_08765	COG5001	Diguanylate cyclase
BJD94_08765	COG4251	negative regulation of phosphorylation
BJD94_08765	COG2203	Gaf domain
BJD94_08770	COG1242	4 iron, 4 sulfur cluster binding
BJD94_08775	COG0070	glutamate synthase
BJD94_08775	COG0069	glutamate synthase activity
BJD94_08775	COG0067	glutamate synthase
BJD94_08785	COG0067	glutamate synthase
BJD94_08785	COG0069	glutamate synthase activity
BJD94_08785	COG0070	glutamate synthase
BJD94_08790	COG0493	'glutamate synthase
BJD94_08800	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BJD94_08815	COG2860	membrane
BJD94_08820	COG0583	DNA-binding transcription factor activity
BJD94_08825	COG0730	response to heat
BJD94_08840	COG0505	Belongs to the CarA family
BJD94_08850	COG0494	nUDIX hydrolase
BJD94_08855	COG0653	protein targeting
BJD94_08870	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BJD94_08875	COG0849	cell division
BJD94_08880	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD94_08885	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD94_08895	COG0772	Belongs to the SEDS family
BJD94_08905	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD94_08910	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD94_08920	COG0768	penicillin binding
BJD94_08925	COG3116	cell division
BJD94_08940	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BJD94_08945	COG3107	peptidoglycan biosynthetic process
BJD94_08955	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BJD94_08960	COG2823	Periplasmic or secreted lipoprotein
BJD94_08965	COG2969	positive regulation of protein catabolic process
BJD94_08970	COG0625	glutathione transferase activity
BJD94_08975	COG2857	Cytochrome c1
BJD94_08980	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD94_08985	COG0723	plastoquinol--plastocyanin reductase activity
BJD94_09000	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD94_09005	COG3105	Protein conserved in bacteria
BJD94_09010	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD94_09015	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD94_09025	COG0187	DNA topoisomerase II activity
BJD94_09030	COG3150	esterase
BJD94_09040	COG3151	Protein conserved in bacteria
BJD94_09045	COG0494	nUDIX hydrolase
BJD94_09050	COG1538	Outer membrane efflux protein
BJD94_09070	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD94_09075	COG3025	triphosphatase activity
BJD94_09080	COG1392	Phosphate transport regulator
BJD94_09085	COG0306	phosphate transporter
BJD94_09090	COG4991	sh3 domain protein
BJD94_09095	COG3409	Peptidoglycan-binding domain 1 protein
BJD94_09095	COG3267	Type II secretory pathway component ExeA
BJD94_09100	COG0617	tRNA 3'-terminal CCA addition
BJD94_09110	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD94_09115	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD94_09125	COG0596	Alpha beta hydrolase
BJD94_09135	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD94_09140	COG1610	YqeY-like protein
BJD94_09150	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD94_09160	COG0582	viral genome integration into host DNA
BJD94_09215	COG3339	Conserved Protein
BJD94_09230	COG2003	Belongs to the UPF0758 family
BJD94_09235	COG3547	Transposase (IS116 IS110 IS902 family)
BJD94_09255	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD94_09260	COG1061	Type III restriction enzyme res subunit
BJD94_09265	COG1002	Type II restriction enzyme, methylase subunits
BJD94_09280	COG3550	peptidyl-serine autophosphorylation
BJD94_09295	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
BJD94_09300	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD94_09305	COG1349	DNA-binding transcription factor activity
BJD94_09310	COG0469	pyruvate kinase activity
BJD94_09320	COG3706	GGDEF domain
BJD94_09325	COG0440	acetolactate synthase activity
BJD94_09330	COG0028	Belongs to the TPP enzyme family
BJD94_09335	COG1022	Amp-dependent synthetase and ligase
BJD94_09365	COG0473	3-isopropylmalate dehydrogenase activity
BJD94_09375	COG0066	3-isopropylmalate dehydratase activity
BJD94_09425	COG3610	response to peptide
BJD94_09430	COG2966	Psort location CytoplasmicMembrane, score
BJD94_09445	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD94_09450	COG0142	geranyltranstransferase activity
BJD94_09455	COG0039	L-malate dehydrogenase activity
BJD94_09475	COG0589	response to stress
BJD94_09480	COG0204	Acyl-transferase
BJD94_09490	COG5007	Belongs to the BolA IbaG family
BJD94_09500	COG2854	intermembrane phospholipid transfer
BJD94_09505	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD94_09510	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD94_09515	COG1127	ABC transporter
BJD94_09525	COG0517	IMP dehydrogenase activity
BJD94_09525	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BJD94_09540	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD94_09545	COG1137	ATPase activity
BJD94_09555	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BJD94_09560	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_09565	COG1660	Displays ATPase and GTPase activities
BJD94_09570	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_09580	COG0312	modulator of DNA gyrase
BJD94_09585	COG3028	Belongs to the UPF0307 family
BJD94_09595	COG1178	ABC-type Fe3 transport system permease component
BJD94_09600	COG4143	(ABC) transporter
BJD94_09605	COG0163	prenyltransferase activity
BJD94_09610	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD94_09630	COG2105	PFAM AIG2 family protein
BJD94_09635	COG2911	Protein conserved in bacteria
BJD94_09640	COG0729	surface antigen
BJD94_09655	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
BJD94_09670	COG1136	(ABC) transporter
BJD94_09670	COG0577	efflux transmembrane transporter activity
BJD94_09695	COG3273	potassium ion transport
BJD94_09695	COG0471	metal ion transport
BJD94_09700	COG2895	sulfate adenylyltransferase (ATP) activity
BJD94_09710	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD94_09710	COG1648	precorrin-2 dehydrogenase activity
BJD94_09715	COG0737	Belongs to the 5'-nucleotidase family
BJD94_09725	COG2153	protein acetylation
BJD94_09735	COG3266	domain, Protein
BJD94_09735	COG3061	Opacity-associated protein A
BJD94_09740	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_09765	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD94_09780	COG0201	protein transport
BJD94_09835	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD94_09880	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD94_09905	COG3064	Membrane
BJD94_09910	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD94_09930	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BJD94_09935	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD94_09940	COG1482	cell wall glycoprotein biosynthetic process
BJD94_09955	COG0438	transferase activity, transferring glycosyl groups
BJD94_10040	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_10050	COG1560	Kdo2-lipid A biosynthetic process
BJD94_10055	COG0859	PFAM glycosyl transferase family 9
BJD94_10060	COG1519	Transferase
BJD94_10075	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_10080	COG1083	cytidylyl-transferase
BJD94_10100	COG2089	acid synthase
BJD94_10105	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BJD94_10110	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BJD94_10130	COG0463	Glycosyl transferase, family 2
BJD94_10145	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_10155	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BJD94_10165	COG3083	sulfuric ester hydrolase activity
BJD94_10170	COG3642	lipopolysaccharide core region biosynthetic process
BJD94_10175	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD94_10180	COG0859	PFAM glycosyl transferase family 9
BJD94_10185	COG0463	Glycosyl transferase, family 2
BJD94_10190	COG0859	PFAM glycosyl transferase family 9
BJD94_10225	COG2003	Belongs to the UPF0758 family
BJD94_10245	COG1560	Kdo2-lipid A biosynthetic process
BJD94_10260	COG1561	YicC-like family, N-terminal region
BJD94_10275	COG0653	protein targeting
BJD94_10300	COG0747	negative chemotaxis
BJD94_10305	COG4239	(ABC) transporter, permease
BJD94_10310	COG4174	ABC transporter (Permease)
BJD94_10315	COG4206	TonB-dependent receptor
BJD94_10325	COG0811	peptide transport
BJD94_10330	COG0811	peptide transport
BJD94_10335	COG0848	biopolymer transport protein
BJD94_10360	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD94_10365	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD94_10370	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD94_10375	COG2233	PERMEase
BJD94_10380	COG2205	protein histidine kinase activity
BJD94_10385	COG0745	RESPONSE REGULATOR receiver
BJD94_10395	COG2183	response to ionizing radiation
BJD94_10405	COG0596	Alpha beta hydrolase
BJD94_10420	COG0494	nUDIX hydrolase
BJD94_10425	COG1218	3'(2'),5'-bisphosphate nucleotidase
BJD94_10435	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
BJD94_10440	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
BJD94_10445	COG3156	type II secretion system protein K
BJD94_10450	COG4795	General secretion pathway protein
BJD94_10455	COG2165	general secretion pathway protein
BJD94_10460	COG2165	general secretion pathway protein
BJD94_10465	COG2165	general secretion pathway protein
BJD94_10470	COG1459	type II secretion system
BJD94_10475	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_10485	COG3031	protein transport across the cell outer membrane
BJD94_10490	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BJD94_10510	COG0456	acetyltransferase
BJD94_10520	COG1295	ribonuclease BN
BJD94_10530	COG1660	Displays ATPase and GTPase activities
BJD94_10540	COG0174	glutamine synthetase
BJD94_10550	COG3852	Histidine kinase
BJD94_10555	COG2204	response regulator
BJD94_10560	COG3300	MHYT domain
BJD94_10560	COG5001	Diguanylate cyclase
BJD94_10565	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD94_10590	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD94_10595	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_10595	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_10605	COG0084	hydrolase, TatD family'
BJD94_10610	COG0805	protein transport
BJD94_10620	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD94_10630	COG3165	ubiquinone biosynthetic process from chorismate
BJD94_10640	COG1322	Protein conserved in bacteria
BJD94_10725	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD94_10730	COG3118	belongs to the thioredoxin family
BJD94_10745	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD94_10755	COG0514	ATP-dependent DNA helicase (RecQ)
BJD94_10760	COG2962	Rard protein
BJD94_10770	COG1280	lysine exporter protein (LysE YggA)
BJD94_10775	COG0210	DNA helicase
BJD94_10815	COG0006	proline dipeptidase activity
BJD94_10815	COG0006	proline dipeptidase activity
BJD94_10835	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD94_10855	COG2132	Multicopper oxidase
BJD94_10890	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD94_10900	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD94_10905	COG0408	coproporphyrinogen oxidase activity
BJD94_10925	COG0551	DNA topoisomerase type I activity
BJD94_10935	COG0758	DNA mediated transformation
BJD94_10950	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD94_10955	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD94_10955	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD94_10960	COG0569	domain protein
BJD94_10965	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_10970	COG1272	protein, Hemolysin III
BJD94_10975	COG4326	sporulation control protein
BJD94_10980	COG3084	Protein conserved in bacteria
BJD94_10990	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BJD94_10995	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_11000	COG0204	Acyl-transferase
BJD94_11010	COG0606	chelatase, subunit chli
BJD94_11020	COG3978	acetolactate synthase activity
BJD94_11025	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD94_11030	COG0129	dihydroxy-acid dehydratase activity
BJD94_11040	COG0583	DNA-binding transcription factor activity
BJD94_11045	COG2814	Major facilitator Superfamily
BJD94_11055	COG0765	amino acid transport
BJD94_11105	COG3312	ion transport
BJD94_11110	COG1475	DNA binding
BJD94_11125	COG0445	tRNA wobble uridine modification
BJD94_11130	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD94_11135	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD94_11140	COG0706	membrane insertase activity
BJD94_11155	COG1126	abc transporter atp-binding protein
BJD94_11175	COG0592	DNA-directed DNA polymerase activity
BJD94_11185	COG0187	DNA topoisomerase II activity
BJD94_11190	COG0071	Belongs to the small heat shock protein (HSP20) family
BJD94_11200	COG3977	Valine--pyruvate aminotransferase
BJD94_11210	COG0751	glycine-tRNA ligase activity
BJD94_11245	COG0604	alcohol dehydrogenase
BJD94_11250	COG0183	Belongs to the thiolase family
BJD94_11260	COG1739	Uncharacterized protein family UPF0029
BJD94_11265	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_11270	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
BJD94_11315	COG0583	DNA-binding transcription factor activity
BJD94_11325	COG2960	long-chain fatty acid transporting porin activity
BJD94_11330	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_11335	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD94_11340	COG1309	transcriptional regulator
BJD94_11380	COG4172	Belongs to the ABC transporter superfamily
BJD94_11385	COG4166	transmembrane transport
BJD94_11395	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_11430	COG2815	serine threonine protein kinase
BJD94_11430	COG0515	serine threonine protein kinase
BJD94_11445	COG1609	Transcriptional regulator
BJD94_11450	COG0129	dihydroxy-acid dehydratase activity
BJD94_11455	COG3265	gluconokinase activity
BJD94_11460	COG2610	gluconate transmembrane transporter activity
BJD94_11465	COG0800	Aldolase
BJD94_11480	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_11485	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD94_11495	COG1522	sequence-specific DNA binding
BJD94_11500	COG5002	protein histidine kinase activity
BJD94_11500	COG5001	Diguanylate cyclase
BJD94_11505	COG0742	ribosomal rna small subunit methyltransferase
BJD94_11520	COG0589	response to stress
BJD94_11525	COG1528	Iron-storage protein
BJD94_11535	COG2081	HI0933 family
BJD94_11545	COG2959	enzyme of heme biosynthesis
BJD94_11560	COG3072	Adenylate cyclase
BJD94_11575	COG0019	diaminopimelate decarboxylase activity
BJD94_11595	COG1011	Hydrolase
BJD94_11600	COG3287	FIST C domain
BJD94_11600	COG2200	EAL domain
BJD94_11600	COG2199	diguanylate cyclase activity
BJD94_11620	COG0561	phosphatase activity
BJD94_11625	COG2267	carboxylic ester hydrolase activity
BJD94_11630	COG1280	lysine exporter protein (LysE YggA)
BJD94_11635	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BJD94_11640	COG0640	Transcriptional regulator
BJD94_11645	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_11685	COG2095	MarC family integral membrane protein
BJD94_11695	COG0742	ribosomal rna small subunit methyltransferase
BJD94_11700	COG0552	protein localization to endoplasmic reticulum
BJD94_11705	COG2884	Cell division ATP-binding protein ftsE
BJD94_11710	COG2177	Part of the ABC transporter FtsEX involved in
BJD94_11725	COG0705	Rhomboid family
BJD94_11730	COG1580	Controls the rotational direction of flagella during chemotaxis
BJD94_11735	COG3161	chorismate lyase activity
BJD94_11780	COG4206	TonB-dependent receptor
BJD94_11870	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD94_11880	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD94_11890	COG1072	(Pantothenic acid kinase))
BJD94_11925	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD94_11965	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
BJD94_11990	COG1573	uracil-dna glycosylase
BJD94_12000	COG3068	Protein conserved in bacteria
BJD94_12005	COG1253	flavin adenine dinucleotide binding
BJD94_12030	COG0789	Transcriptional regulator
BJD94_12035	COG0840	transmembrane signaling receptor activity
BJD94_12040	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD94_12050	COG2264	protein methyltransferase activity
BJD94_12055	COG0439	Biotin carboxylase
BJD94_12060	COG0511	ligase activity, forming carbon-carbon bonds
BJD94_12070	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD94_12085	COG2814	Major facilitator Superfamily
BJD94_12090	COG2198	Histidine kinase
BJD94_12090	COG0784	Response regulator, receiver
BJD94_12090	COG2205	protein histidine kinase activity
BJD94_12105	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD94_12115	COG2095	MarC family integral membrane protein
BJD94_12125	COG4232	protein-disulfide reductase activity
BJD94_12130	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BJD94_12135	COG1027	Aspartate ammonia-lyase
BJD94_12145	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD94_12150	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD94_12155	COG2205	protein histidine kinase activity
BJD94_12160	COG0745	RESPONSE REGULATOR receiver
BJD94_12165	COG3678	ATP-independent chaperone mediated protein folding
BJD94_12180	COG0534	Mate efflux family protein
BJD94_12200	COG1285	pathogenesis
BJD94_12205	COG1509	lysine 2,3-aminomutase activity
BJD94_12220	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
BJD94_12230	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD94_12260	COG4942	peptidase
BJD94_12265	COG1045	serine acetyltransferase
BJD94_12280	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD94_12290	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BJD94_12300	COG0471	metal ion transport
BJD94_12375	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD94_12380	COG0802	atpase or kinase
BJD94_12385	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD94_12390	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD94_12405	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD94_12410	COG0330	HflC and HflK could
BJD94_12415	COG0330	HflC and HflK could
BJD94_12420	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
BJD94_12425	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD94_12430	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
BJD94_12445	COG0402	S-adenosylhomocysteine deaminase activity
BJD94_12450	COG0557	exoribonuclease II activity
BJD94_12460	COG0546	phosphoglycolate phosphatase activity
BJD94_12465	COG0180	Tryptophanyl-tRNA synthetase
BJD94_12485	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD94_12495	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_12505	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_12510	COG3954	Phosphoribulokinase
BJD94_12520	COG0429	hydrolase of the alpha beta-hydrolase fold
BJD94_12530	COG0488	(ABC) transporter
BJD94_12535	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD94_12550	COG1047	Peptidyl-prolyl cis-trans
BJD94_12570	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_12575	COG2964	Protein conserved in bacteria
BJD94_12580	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BJD94_12615	COG2906	2 iron, 2 sulfur cluster binding
BJD94_12625	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD94_12655	COG1494	fructose-1,6-bisphosphatase
BJD94_12670	COG1575	Belongs to the MenA family. Type 1 subfamily
BJD94_12690	COG1609	Transcriptional regulator
BJD94_12695	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD94_12705	COG0281	malic enzyme
BJD94_12715	COG0626	cystathionine gamma-synthase activity
BJD94_12720	COG0527	aspartate kinase activity
BJD94_12720	COG0460	homoserine dehydrogenase
BJD94_12725	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD94_12735	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD94_12740	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD94_12745	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD94_12820	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BJD94_12825	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BJD94_12855	COG0305	Participates in initiation and elongation during chromosome replication
BJD94_12860	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD94_12870	COG0432	Pfam Uncharacterised protein family UPF0047
BJD94_12885	COG0735	belongs to the Fur family
BJD94_12915	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_13000	COG3706	GGDEF domain
BJD94_13000	COG0745	RESPONSE REGULATOR receiver
BJD94_13010	COG0646	methionine synthase
BJD94_13010	COG1410	methionine synthase
BJD94_13015	COG0527	aspartate kinase activity
BJD94_13020	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD94_13050	COG2199	diguanylate cyclase activity
BJD94_13050	COG2200	EAL domain
BJD94_13075	COG3267	Type II secretory pathway component ExeA
BJD94_13075	COG3409	Peptidoglycan-binding domain 1 protein
BJD94_13085	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_13090	COG1459	type II secretion system
BJD94_13135	COG1077	Cell shape determining protein MreB Mrl
BJD94_13140	COG1792	Involved in formation and maintenance of cell shape
BJD94_13145	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BJD94_13155	COG1530	ribonuclease E activity
BJD94_13160	COG3164	Protein of unknown function
BJD94_13165	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD94_13170	COG0312	modulator of DNA gyrase
BJD94_13175	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD94_13180	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BJD94_13190	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD94_13195	COG0251	oxidation-reduction process
BJD94_13230	COG0456	acetyltransferase
BJD94_13240	COG4269	membrane
BJD94_13255	COG2927	DNA polymerase III (CHI subunit)
BJD94_13265	COG0795	lipopolysaccharide-transporting ATPase activity
BJD94_13270	COG0795	lipopolysaccharide-transporting ATPase activity
BJD94_13285	COG0726	polysaccharide deacetylase
BJD94_13290	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BJD94_13300	COG1447	Phosphotransferase system cellobiose-specific component IIA
BJD94_13305	COG1486	melibiose metabolic process
BJD94_13310	COG3394	polysaccharide catabolic process
BJD94_13315	COG1609	Transcriptional regulator
BJD94_13430	COG0741	lytic transglycosylase activity
BJD94_13455	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD94_13475	COG0762	integral membrane protein
BJD94_13480	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BJD94_13485	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD94_13515	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD94_13525	COG2356	endonuclease I
BJD94_13545	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD94_13555	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_13565	COG0191	fructose-bisphosphate aldolase activity
BJD94_13570	COG0668	transmembrane transport
BJD94_13575	COG1279	arginine transmembrane transporter activity
BJD94_13590	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD94_13600	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD94_13610	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
BJD94_13615	COG3079	Belongs to the UPF0149 family
BJD94_13620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_13625	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_13640	COG0354	folic acid binding
BJD94_13655	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BJD94_13660	COG1595	DNA-templated transcription, initiation
BJD94_13675	COG3086	response to oxidative stress
BJD94_13685	COG0681	Belongs to the peptidase S26 family
BJD94_13700	COG1381	Involved in DNA repair and RecF pathway recombination
BJD94_13710	COG0736	holo-[acyl-carrier-protein] synthase activity
BJD94_13730	COG4999	Histidine kinase
BJD94_13730	COG3850	Histidine kinase
BJD94_13730	COG2205	protein histidine kinase activity
BJD94_13730	COG3437	response regulator, receiver
BJD94_13735	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD94_13740	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD94_13745	COG3956	TIGRFAM MazG family protein
BJD94_13770	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD94_13775	COG0585	pseudouridine synthase activity
BJD94_13790	COG4942	peptidase
BJD94_13790	COG1388	LysM domain
BJD94_13795	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD94_13800	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD94_13820	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD94_13825	COG0527	aspartate kinase activity
BJD94_13880	COG5016	pyruvate
BJD94_13880	COG0511	ligase activity, forming carbon-carbon bonds
BJD94_13885	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
BJD94_13895	COG1238	metal cluster binding
BJD94_13900	COG0612	Peptidase, M16
BJD94_13920	COG4536	flavin adenine dinucleotide binding
BJD94_13925	COG4137	Cytochrome C assembly protein
BJD94_13930	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD94_13955	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BJD94_13965	COG0237	dephospho-CoA kinase activity
BJD94_13975	COG1459	type II secretion system
BJD94_13980	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_13995	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD94_14000	COG2186	Transcriptional regulator
BJD94_14005	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BJD94_14010	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD94_14015	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_14030	COG0288	reversible hydration of carbon dioxide
BJD94_14035	COG0659	secondary active sulfate transmembrane transporter activity
BJD94_14040	COG1131	(ABC) transporter
BJD94_14045	COG0842	Transport permease protein
BJD94_14060	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD94_14075	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD94_14080	COG1489	DNA binding
BJD94_14085	COG1643	Atp-dependent helicase
BJD94_14090	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD94_14095	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD94_14105	COG1929	Belongs to the glycerate kinase type-1 family
BJD94_14110	COG2610	gluconate transmembrane transporter activity
BJD94_14115	COG3835	regulator
BJD94_14125	COG0347	Belongs to the P(II) protein family
BJD94_14130	COG0004	ammonium transporteR
BJD94_14135	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD94_14145	COG3842	ATPase activity
BJD94_14150	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD94_14165	COG2971	BadF BadG BcrA BcrD
BJD94_14175	COG4608	Belongs to the ABC transporter superfamily
BJD94_14180	COG0444	Belongs to the ABC transporter superfamily
BJD94_14185	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_14190	COG0601	transmembrane transport
BJD94_14195	COG0747	negative chemotaxis
BJD94_14200	COG2205	protein histidine kinase activity
BJD94_14200	COG0784	Response regulator, receiver
BJD94_14210	COG0628	permease
BJD94_14235	COG0739	heme binding
BJD94_14245	COG2832	Protein of unknown function (DUF454)
BJD94_14250	COG2027	D-alanyl-D-alanine carboxypeptidase
BJD94_14275	COG1534	Rna-binding protein
BJD94_14285	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD94_14290	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD94_14300	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD94_14320	COG0195	Participates in both transcription termination and antitermination
BJD94_14370	COG4785	May be involved in cell division
BJD94_14380	COG0534	Mate efflux family protein
BJD94_14405	COG3153	acetyltransferase
BJD94_14415	COG0456	acetyltransferase
BJD94_14425	COG3706	GGDEF domain
BJD94_14435	COG0084	hydrolase, TatD family'
BJD94_14440	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_14445	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BJD94_14470	COG0560	Phosphoserine phosphatase
BJD94_14480	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BJD94_14500	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD94_14505	COG1022	Amp-dependent synthetase and ligase
BJD94_14540	COG4964	Belongs to the GSP D family
BJD94_14590	COG2059	Chromate
BJD94_14595	COG0583	DNA-binding transcription factor activity
BJD94_14605	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD94_14605	COG3408	Glycogen debranching enzyme
BJD94_14610	COG0531	amino acid
BJD94_14615	COG0531	amino acid
BJD94_14620	COG2731	YhcH YjgK YiaL family protein
BJD94_14625	COG3250	beta-galactosidase activity
BJD94_14635	COG1609	Transcriptional regulator
BJD94_14640	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD94_14655	COG2017	converts alpha-aldose to the beta-anomer
BJD94_14660	COG0840	transmembrane signaling receptor activity
BJD94_14670	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_14685	COG0569	domain protein
BJD94_14685	COG0189	ligase activity
BJD94_14700	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BJD94_14705	COG1349	DNA-binding transcription factor activity
BJD94_14715	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD94_14720	COG2171	N-acyltransferase activity
BJD94_14725	COG3141	response to X-ray
BJD94_14740	COG3083	sulfuric ester hydrolase activity
BJD94_14745	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD94_14750	COG1074	ATP-dependent DNA helicase activity
BJD94_14755	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BJD94_14775	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BJD94_14780	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD94_14785	COG2166	iron-sulfur cluster assembly
BJD94_14795	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD94_14800	COG0693	protein deglycase activity
BJD94_14805	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD94_14820	COG1595	DNA-templated transcription, initiation
BJD94_14830	COG2211	Major facilitator Superfamily
BJD94_14850	COG0271	Belongs to the BolA IbaG family
BJD94_14880	COG0745	RESPONSE REGULATOR receiver
BJD94_14905	COG0010	Belongs to the arginase family
BJD94_14910	COG0513	Belongs to the DEAD box helicase family
BJD94_14920	COG0523	cobalamin synthesis protein
BJD94_14930	COG2199	diguanylate cyclase activity
BJD94_14950	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_14955	COG1116	anion transmembrane transporter activity
BJD94_14960	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD94_14970	COG3707	response regulator
BJD94_14985	COG1648	precorrin-2 dehydrogenase activity
BJD94_14985	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD94_14990	COG0243	molybdopterin cofactor binding
BJD94_15000	COG0366	Alpha amylase catalytic
BJD94_15005	COG0840	transmembrane signaling receptor activity
BJD94_15010	COG0840	transmembrane signaling receptor activity
BJD94_15025	COG2271	Major facilitator Superfamily
BJD94_15030	COG0584	glycerophosphoryl diester phosphodiesterase
BJD94_15035	COG0312	modulator of DNA gyrase
BJD94_15040	COG0312	modulator of DNA gyrase
BJD94_15050	COG3069	C4-dicarboxylate transmembrane transporter activity
BJD94_15055	COG1704	LemA family
BJD94_15060	COG0501	Belongs to the peptidase M48B family
BJD94_15080	COG5444	nuclease activity
BJD94_15110	COG3501	Rhs element vgr protein
BJD94_15165	COG0631	protein serine/threonine phosphatase activity
BJD94_15200	COG2815	serine threonine protein kinase
BJD94_15200	COG0515	serine threonine protein kinase
BJD94_15220	COG3530	Putative quorum-sensing-regulated virulence factor
BJD94_15245	COG3186	Phenylalanine-4-hydroxylase
BJD94_15250	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD94_15275	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
BJD94_15285	COG4191	Histidine kinase
BJD94_15285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_15290	COG3437	response regulator, receiver
BJD94_15290	COG0784	Response regulator, receiver
BJD94_15350	COG1073	alpha beta
BJD94_15350	COG3064	Membrane
BJD94_15350	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
BJD94_15355	COG2994	toxin metabolic process
BJD94_15390	COG5642	Protein of unknown function (DUF2384)
BJD94_15400	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_15410	COG1024	Enoyl-CoA hydratase
BJD94_15415	COG1024	Enoyl-CoA hydratase
BJD94_15430	COG0183	Belongs to the thiolase family
BJD94_15440	COG1960	acyl-CoA dehydrogenase activity
BJD94_15445	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD94_15450	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BJD94_15460	COG0450	alkyl hydroperoxide reductase
BJD94_15470	COG1278	Cold shock
BJD94_15485	COG1309	transcriptional regulator
BJD94_15490	COG2130	NADP-dependent
BJD94_15505	COG3710	Transcriptional regulator
BJD94_15505	COG0457	Tetratricopeptide repeat
BJD94_15520	COG2197	response regulator
BJD94_15525	COG3851	Histidine kinase
BJD94_15530	COG2271	Major facilitator Superfamily
BJD94_15535	COG1482	cell wall glycoprotein biosynthetic process
BJD94_15545	COG2203	Gaf domain
BJD94_15545	COG2199	diguanylate cyclase activity
BJD94_15555	COG1278	Cold shock
BJD94_15585	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_15590	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_15595	COG0840	transmembrane signaling receptor activity
BJD94_15615	COG2195	Cleaves the N-terminal amino acid of tripeptides
BJD94_15625	COG4989	oxidoreductase activity
BJD94_15655	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD94_15665	COG0303	'Molybdopterin
BJD94_15670	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD94_15675	COG2897	thiosulfate sulfurtransferase activity
BJD94_15695	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD94_15700	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD94_15715	COG0840	transmembrane signaling receptor activity
BJD94_15720	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_15730	COG0109	protoheme IX farnesyltransferase activity
BJD94_15735	COG1612	heme a metabolic process
BJD94_15755	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD94_15760	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD94_15765	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD94_15770	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD94_15780	COG1280	lysine exporter protein (LysE YggA)
BJD94_15805	COG1846	Transcriptional regulator
BJD94_15810	COG1764	response to oxidative stress
BJD94_15820	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_15835	COG0697	spore germination
BJD94_15850	COG2814	Major facilitator Superfamily
BJD94_15855	COG0583	DNA-binding transcription factor activity
BJD94_15860	COG2203	Gaf domain
BJD94_15860	COG4251	negative regulation of phosphorylation
BJD94_15860	COG3706	GGDEF domain
BJD94_15860	COG5001	Diguanylate cyclase
BJD94_15865	COG0251	oxidation-reduction process
BJD94_15880	COG4145	pantothenate transmembrane transporter activity
BJD94_15890	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
BJD94_15900	COG0837	glucose binding
BJD94_15900	COG1737	Transcriptional regulator
BJD94_15910	COG1131	(ABC) transporter
BJD94_15915	COG0842	Transport permease protein
BJD94_15945	COG1846	Transcriptional regulator
BJD94_15960	COG0513	Belongs to the DEAD box helicase family
BJD94_15985	COG3568	Endonuclease Exonuclease Phosphatase
BJD94_16005	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD94_16045	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD94_16045	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD94_16065	COG2197	response regulator
BJD94_16070	COG3850	Histidine kinase
BJD94_16080	COG0243	molybdopterin cofactor binding
BJD94_16090	COG3005	denitrification pathway
BJD94_16115	COG0183	Belongs to the thiolase family
BJD94_16125	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_16130	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_16185	COG2827	Endonuclease containing a URI domain
BJD94_16190	COG3132	Protein of unknown function, DUF480
BJD94_16210	COG1482	cell wall glycoprotein biosynthetic process
BJD94_16225	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_16245	COG0383	alpha-mannosidase activity
BJD94_16280	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD94_16295	COG5002	protein histidine kinase activity
BJD94_16295	COG0784	Response regulator, receiver
BJD94_16295	COG2205	protein histidine kinase activity
BJD94_16320	COG0583	DNA-binding transcription factor activity
BJD94_16345	COG1522	sequence-specific DNA binding
BJD94_16350	COG0531	amino acid
BJD94_16355	COG0121	glutamine amidotransferase
BJD94_16370	COG2205	protein histidine kinase activity
BJD94_16375	COG0745	RESPONSE REGULATOR receiver
BJD94_16400	COG2239	Acts as a magnesium transporter
BJD94_16410	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BJD94_16415	COG0402	S-adenosylhomocysteine deaminase activity
BJD94_16420	COG1067	ATP-dependent peptidase activity
BJD94_16430	COG4172	Belongs to the ABC transporter superfamily
BJD94_16435	COG1505	serine-type exopeptidase activity
BJD94_16440	COG0583	DNA-binding transcription factor activity
BJD94_16445	COG1620	l-lactate permease
BJD94_16455	COG1139	Iron-sulfur cluster binding protein
BJD94_16480	COG2814	Major facilitator Superfamily
BJD94_16525	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BJD94_16540	COG3015	lipoprotein NlpE involved in copper resistance
BJD94_16545	COG1126	abc transporter atp-binding protein
BJD94_16550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_16555	COG4215	(ABC) transporter
BJD94_16560	COG4160	amino acid transport
BJD94_16575	COG5002	protein histidine kinase activity
BJD94_16575	COG5001	Diguanylate cyclase
BJD94_16580	COG2755	lipolytic protein G-D-S-L family
BJD94_16590	COG0840	transmembrane signaling receptor activity
BJD94_16595	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_16625	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_16630	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_16635	COG1169	isochorismate synthase
BJD94_16640	COG1021	2,3-dihydroxybenzoate-AMP ligase
BJD94_16660	COG1021	2,3-dihydroxybenzoate-AMP ligase
BJD94_16670	COG4607	ABC-type enterochelin transport system periplasmic component
BJD94_16675	COG4774	siderophore transport
BJD94_16675	COG1629	transport
BJD94_16690	COG0189	ligase activity
BJD94_16690	COG4067	protein conserved in archaea
BJD94_16710	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_16725	COG0814	amino acid
BJD94_16730	COG0488	(ABC) transporter
BJD94_16745	COG1609	Transcriptional regulator
BJD94_16750	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_16765	COG0242	peptide deformylase activity
BJD94_16775	COG1253	flavin adenine dinucleotide binding
BJD94_16780	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_16785	COG3284	Transcriptional regulator
BJD94_16795	COG1879	ABC-type sugar transport system periplasmic component
BJD94_16800	COG0625	glutathione transferase activity
BJD94_16810	COG0384	phenazine biosynthesis protein PhzF
BJD94_16815	COG2197	response regulator
BJD94_16820	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD94_16825	COG0673	inositol 2-dehydrogenase activity
BJD94_16850	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_16860	COG0583	DNA-binding transcription factor activity
BJD94_16865	COG2194	sulfuric ester hydrolase activity
BJD94_16870	COG0798	PFAM Bile acid sodium symporter
BJD94_16875	COG0640	Transcriptional regulator
BJD94_16890	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD94_16895	COG0700	Nucleoside recognition
BJD94_16900	COG3366	ferrous iron transmembrane transporter activity
BJD94_16910	COG0366	Alpha amylase catalytic
BJD94_16915	COG0800	Aldolase
BJD94_16920	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_16925	COG0697	spore germination
BJD94_16935	COG0583	DNA-binding transcription factor activity
BJD94_16950	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD94_16960	COG2985	domain, Protein
BJD94_16985	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD94_16990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD94_16995	COG0729	surface antigen
BJD94_17005	COG1917	Cupin 2, conserved barrel domain protein
BJD94_17015	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_17055	COG0668	transmembrane transport
BJD94_17090	COG0494	nUDIX hydrolase
BJD94_17095	COG1881	PFAM PEBP family protein
BJD94_17100	COG2207	Transcriptional regulator
BJD94_17105	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD94_17120	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_17120	COG1263	PTS System
BJD94_17135	COG0454	-acetyltransferase
BJD94_17140	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD94_17165	COG1858	cytochrome C peroxidase
BJD94_17180	COG2207	Transcriptional regulator
BJD94_17185	COG2814	Major facilitator Superfamily
BJD94_17215	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BJD94_17225	COG0583	DNA-binding transcription factor activity
BJD94_17250	COG0513	Belongs to the DEAD box helicase family
BJD94_17285	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD94_17295	COG1357	PFAM Pentapeptide repeats (8 copies)
BJD94_17315	COG3437	response regulator, receiver
BJD94_17325	COG0579	oxidoreductase
BJD94_17360	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_17375	COG2205	protein histidine kinase activity
BJD94_17395	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BJD94_17405	COG3706	GGDEF domain
BJD94_17420	COG2176	DNA-directed DNA polymerase activity
BJD94_17425	COG0577	efflux transmembrane transporter activity
BJD94_17425	COG1136	(ABC) transporter
BJD94_17430	COG1136	(ABC) transporter
BJD94_17430	COG0577	efflux transmembrane transporter activity
BJD94_17460	COG1120	ATPase activity
BJD94_17465	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
BJD94_17495	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_17500	COG3716	PTS system mannose fructose sorbose family IID component
BJD94_17510	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_17515	COG2222	sugar isomerase
BJD94_17525	COG1349	DNA-binding transcription factor activity
BJD94_17535	COG1349	DNA-binding transcription factor activity
BJD94_17540	COG0697	spore germination
BJD94_17555	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_17605	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_17610	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_17630	COG0840	transmembrane signaling receptor activity
BJD94_17645	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BJD94_17675	COG2258	MOSC domain
BJD94_17695	COG1757	Na H antiporter
BJD94_17700	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BJD94_17705	COG0513	Belongs to the DEAD box helicase family
BJD94_17715	COG1132	(ABC) transporter
BJD94_17730	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD94_17765	COG2204	response regulator
BJD94_17795	COG3069	C4-dicarboxylate transmembrane transporter activity
BJD94_17800	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD94_17830	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD94_17830	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD94_17835	COG1737	Transcriptional regulator
BJD94_17855	COG0406	alpha-ribazole phosphatase activity
BJD94_17895	COG3706	GGDEF domain
BJD94_17895	COG0745	RESPONSE REGULATOR receiver
BJD94_17905	COG0840	transmembrane signaling receptor activity
BJD94_17915	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD94_17920	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_17925	COG0840	transmembrane signaling receptor activity
BJD94_17930	COG0835	chemotaxis
BJD94_17945	COG0745	RESPONSE REGULATOR receiver
BJD94_17955	COG1444	tRNA N-acetyltransferase activity
BJD94_17980	COG4608	Belongs to the ABC transporter superfamily
BJD94_17985	COG0444	Belongs to the ABC transporter superfamily
BJD94_17995	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
BJD94_17995	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BJD94_18015	COG0217	transcriptional regulatory protein
BJD94_18025	COG1136	(ABC) transporter
BJD94_18030	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_18045	COG3275	phosphorelay sensor kinase activity
BJD94_18065	COG0786	glutamate:sodium symporter activity
BJD94_18070	COG0786	glutamate:sodium symporter activity
BJD94_18110	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD94_18115	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BJD94_18120	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BJD94_18140	COG1309	transcriptional regulator
BJD94_18165	COG1741	Belongs to the pirin family
BJD94_18170	COG5001	Diguanylate cyclase
BJD94_18175	COG3706	GGDEF domain
BJD94_18230	COG1982	Orn Lys Arg decarboxylase major
BJD94_18235	COG0531	amino acid
BJD94_18270	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_18275	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
BJD94_18280	COG1162	GTPase activity
BJD94_18285	COG2847	Copper chaperone PCu(A)C
BJD94_18290	COG1999	signal sequence binding
BJD94_18320	COG0058	SHG alpha-glucan phosphorylase activity
BJD94_18325	COG1640	4-alpha-glucanotransferase
BJD94_18330	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD94_18335	COG0840	transmembrane signaling receptor activity
BJD94_18340	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD94_18385	COG0560	Phosphoserine phosphatase
BJD94_18400	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_18405	COG0625	glutathione transferase activity
BJD94_18410	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_18415	COG1283	sodium-dependent phosphate transmembrane transporter activity
BJD94_18420	COG0612	Peptidase, M16
BJD94_18430	COG0583	DNA-binding transcription factor activity
BJD94_18440	COG0642	Histidine kinase
BJD94_18445	COG0745	RESPONSE REGULATOR receiver
BJD94_18455	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_18470	COG2199	diguanylate cyclase activity
BJD94_18485	COG1609	Transcriptional regulator
BJD94_18500	COG0395	ABC-type sugar transport system, permease component
BJD94_18505	COG2723	6-phospho-beta-galactosidase activity
BJD94_18515	COG1609	Transcriptional regulator
BJD94_18525	COG0747	negative chemotaxis
BJD94_18535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_18540	COG0444	Belongs to the ABC transporter superfamily
BJD94_18545	COG4608	Belongs to the ABC transporter superfamily
BJD94_18555	COG1609	Transcriptional regulator
BJD94_18570	COG4580	involved in the transport of maltose and maltodextrins
BJD94_18580	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD94_18585	COG0534	Mate efflux family protein
BJD94_18595	COG1566	PFAM secretion protein HlyD family protein
BJD94_18625	COG0564	pseudouridine synthase activity
BJD94_18630	COG3706	GGDEF domain
BJD94_18650	COG1609	Transcriptional regulator
BJD94_18660	COG1129	ABC transporter
BJD94_18685	COG2211	Major facilitator Superfamily
BJD94_18695	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD94_18700	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD94_18705	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
BJD94_18710	COG2188	Transcriptional regulator
BJD94_18715	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18715	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_18715	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18720	COG0383	alpha-mannosidase activity
BJD94_18725	COG1929	Belongs to the glycerate kinase type-1 family
BJD94_18730	COG1482	cell wall glycoprotein biosynthetic process
BJD94_18780	COG1482	cell wall glycoprotein biosynthetic process
BJD94_18785	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_18785	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18785	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18790	COG2207	Transcriptional regulator
BJD94_18800	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18815	COG3537	Alpha-1,2-mannosidase
BJD94_18820	COG3537	Alpha-1,2-mannosidase
BJD94_18825	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18830	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18830	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_18830	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_18845	COG3383	formate dehydrogenase (NAD+) activity
BJD94_18855	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD94_18895	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
BJD94_18915	COG0583	DNA-binding transcription factor activity
BJD94_18930	COG0137	argininosuccinate synthase activity
BJD94_18940	COG1301	dicarboxylic acid transport
BJD94_18985	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD94_18990	COG2175	clavaminate synthase activity
BJD94_19025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD94_19035	COG3706	GGDEF domain
BJD94_19050	COG2356	endonuclease I
BJD94_19065	COG1368	sulfuric ester hydrolase activity
BJD94_19070	COG2194	sulfuric ester hydrolase activity
BJD94_19075	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD94_19080	COG2205	protein histidine kinase activity
BJD94_19085	COG0745	RESPONSE REGULATOR receiver
BJD94_19090	COG4221	oxidoreductase activity
BJD94_19115	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_19120	COG0076	glutamate decarboxylase activity
BJD94_19135	COG0561	phosphatase activity
BJD94_19150	COG0671	phosphoesterase, PA-phosphatase related
BJD94_19155	COG0351	phosphomethylpyrimidine kinase
BJD94_19220	COG2814	Major facilitator Superfamily
BJD94_19240	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD94_19245	COG4771	TonB-dependent receptor
BJD94_19265	COG0393	Putative heavy-metal-binding
BJD94_19280	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_19290	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BJD94_19310	COG0753	catalase activity
BJD94_19330	COG0346	lactoylglutathione lyase activity
BJD94_19340	COG2211	Major facilitator Superfamily
BJD94_19355	COG3240	lipase activity
BJD94_19400	COG3040	lipid binding
BJD94_19445	COG3111	PFAM Bacterial OB fold (BOF) protein
BJD94_19455	COG2274	protein secretion by the type I secretion system
BJD94_19465	COG1538	Outer membrane efflux protein
BJD94_19485	COG0668	transmembrane transport
BJD94_19510	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_19515	COG4946	Tricorn protease homolog
BJD94_19515	COG0793	Belongs to the peptidase S41A family
BJD94_19530	COG1122	ATPase activity
BJD94_19535	COG4720	Psort location CytoplasmicMembrane, score
BJD94_19540	COG1566	PFAM secretion protein HlyD family protein
BJD94_19550	COG3706	GGDEF domain
BJD94_19570	COG3272	Protein of unknown function (DUF1722)
BJD94_19575	COG0789	Transcriptional regulator
BJD94_19580	COG0415	Belongs to the DNA photolyase family
BJD94_19585	COG1376	ErfK ybiS ycfS ynhG family protein
BJD94_19585	COG1388	LysM domain
BJD94_19615	COG0513	Belongs to the DEAD box helicase family
BJD94_19655	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD94_19660	COG0573	inorganic phosphate transmembrane transporter activity
BJD94_19665	COG0581	inorganic phosphate transmembrane transporter activity
BJD94_19675	COG3706	GGDEF domain
BJD94_19675	COG2203	Gaf domain
BJD94_19675	COG5001	Diguanylate cyclase
BJD94_19675	COG4251	negative regulation of phosphorylation
BJD94_19685	COG2304	oxidoreductase activity
BJD94_19705	COG0714	Associated with various cellular activities
BJD94_19775	COG1596	polysaccharide export
BJD94_19785	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD94_19840	COG2354	Protein conserved in bacteria
BJD94_19850	COG0418	dihydroorotase activity
BJD94_19855	COG0633	Ferredoxin
BJD94_19855	COG3217	Mosc domain protein beta barrel domain protein
BJD94_19855	COG0633	Ferredoxin
BJD94_19855	COG3217	Mosc domain protein beta barrel domain protein
BJD94_19860	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD94_19905	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BJD94_19910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BJD94_19920	COG0848	biopolymer transport protein
BJD94_19925	COG0811	peptide transport
BJD94_19930	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
BJD94_19940	COG3721	Heme iron utilization protein
BJD94_19945	COG0748	coenzyme F420 binding
BJD94_19955	COG0784	Response regulator, receiver
BJD94_19955	COG0835	chemotaxis
BJD94_19960	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD94_19975	COG0589	response to stress
BJD94_19980	COG0366	Alpha amylase catalytic
BJD94_19990	COG0840	transmembrane signaling receptor activity
BJD94_20025	COG0739	heme binding
BJD94_20030	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_20045	COG2084	Dehydrogenase
BJD94_20070	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_20090	COG0840	transmembrane signaling receptor activity
BJD94_20105	COG3706	GGDEF domain
BJD94_20110	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_20110	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_20115	COG1765	OsmC-like protein
BJD94_20120	COG2171	N-acyltransferase activity
BJD94_20140	COG1011	Hydrolase
BJD94_20165	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD94_20170	COG2207	Transcriptional regulator
BJD94_20170	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BJD94_20185	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD94_20190	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD94_20195	COG3842	ATPase activity
BJD94_20215	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD94_20220	COG0583	DNA-binding transcription factor activity
BJD94_20235	COG1760	l-serine dehydratase
BJD94_20255	COG1686	Belongs to the peptidase S11 family
BJD94_20275	COG1309	transcriptional regulator
BJD94_20280	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_20300	COG4175	Glycine betaine
BJD94_20305	COG3059	membrane
BJD94_20335	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BJD94_20340	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
BJD94_20345	COG0247	lactate metabolic process
BJD94_20360	COG1619	proteins homologs of microcin C7 resistance protein MccF
BJD94_20365	COG2133	pyrroloquinoline quinone binding
BJD94_20375	COG1454	alcohol dehydrogenase
BJD94_20380	COG0443	Heat shock 70 kDa protein
BJD94_20385	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD94_20415	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_20420	COG3174	membrane
BJD94_20445	COG0814	amino acid
BJD94_20450	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD94_20475	COG2962	Rard protein
BJD94_20490	COG0671	phosphoesterase, PA-phosphatase related
BJD94_20500	COG1288	antiporter activity
BJD94_20510	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
BJD94_20525	COG2425	protein containing a von Willebrand factor type A (vWA) domain
BJD94_20530	COG2315	Protein conserved in bacteria
BJD94_20550	COG1129	ABC transporter
BJD94_20555	COG1172	Belongs to the binding-protein-dependent transport system permease family
BJD94_20560	COG1879	ABC-type sugar transport system periplasmic component
BJD94_20565	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_20570	COG1609	Transcriptional regulator
BJD94_20580	COG0784	Response regulator, receiver
BJD94_20580	COG0835	chemotaxis
BJD94_20590	COG0456	acetyltransferase
BJD94_20605	COG0420	3'-5' exonuclease activity
BJD94_20610	COG0419	ATPase involved in DNA repair
BJD94_20620	COG0583	DNA-binding transcription factor activity
BJD94_20640	COG4964	Belongs to the GSP D family
BJD94_20725	COG3290	protein histidine kinase activity
BJD94_20735	COG0110	maltose O-acetyltransferase activity
BJD94_20750	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BJD94_20755	COG4605	iron ion homeostasis
BJD94_20760	COG4604	ABC transporter, ATP-binding protein
BJD94_20765	COG0789	Transcriptional regulator
BJD94_20795	COG1289	transmembrane transporter activity
BJD94_20800	COG0210	DNA helicase
BJD94_20810	COG1879	ABC-type sugar transport system periplasmic component
BJD94_20835	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD94_20840	COG3005	denitrification pathway
BJD94_20865	COG0513	Belongs to the DEAD box helicase family
BJD94_20875	COG1716	ATPase activity
BJD94_20875	COG5001	Diguanylate cyclase
BJD94_20900	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD94_20915	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
BJD94_20920	COG0513	Belongs to the DEAD box helicase family
BJD94_20935	COG2814	Major facilitator Superfamily
BJD94_20940	COG0583	DNA-binding transcription factor activity
BJD94_20945	COG1902	pentaerythritol trinitrate reductase activity
BJD94_20950	COG1902	pentaerythritol trinitrate reductase activity
BJD94_20955	COG0604	alcohol dehydrogenase
BJD94_20960	COG3119	arylsulfatase activity
BJD94_20975	COG0641	radical SAM
BJD94_20980	COG0714	Associated with various cellular activities
BJD94_21015	COG1524	type I phosphodiesterase nucleotide pyrophosphatase
BJD94_21025	COG0641	radical SAM
BJD94_21055	COG2814	Major facilitator Superfamily
BJD94_21075	COG0583	DNA-binding transcription factor activity
BJD94_21080	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD94_21095	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD94_21105	COG1132	(ABC) transporter
BJD94_21120	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD94_21120	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD94_21130	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD94_21175	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BJD94_21175	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_21175	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_21180	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD94_21185	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_21185	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_21190	COG1609	Transcriptional regulator
BJD94_21215	COG0469	pyruvate kinase activity
BJD94_21220	COG2271	Major facilitator Superfamily
BJD94_21225	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD94_21230	COG4191	Histidine kinase
BJD94_21240	COG1979	alcohol dehydrogenase
BJD94_21245	COG2207	Transcriptional regulator
BJD94_21255	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BJD94_21265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_21280	COG3437	response regulator, receiver
BJD94_21280	COG0784	Response regulator, receiver
BJD94_21285	COG0546	phosphoglycolate phosphatase activity
BJD94_21300	COG0513	Belongs to the DEAD box helicase family
BJD94_21315	COG3038	cytochrome b561
BJD94_21325	COG2116	formate transmembrane transporter activity
BJD94_21330	COG0583	DNA-binding transcription factor activity
BJD94_21340	COG3593	DNA synthesis involved in DNA repair
BJD94_21345	COG0737	Belongs to the 5'-nucleotidase family
BJD94_21350	COG0861	Integral membrane protein TerC family
BJD94_21375	COG2267	carboxylic ester hydrolase activity
BJD94_21380	COG2067	long-chain fatty acid transport protein
BJD94_21395	COG2050	protein possibly involved in aromatic compounds catabolism
BJD94_21405	COG4533	DNA binding
BJD94_21415	COG0366	Alpha amylase catalytic
BJD94_21420	COG0583	DNA-binding transcription factor activity
BJD94_21440	COG0484	heat shock protein binding
BJD94_21455	COG5001	Diguanylate cyclase
BJD94_21455	COG1716	ATPase activity
BJD94_21460	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD94_21470	COG4181	ATPase activity
BJD94_21475	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BJD94_21480	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
BJD94_21480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD94_21485	COG1984	allophanate hydrolase subunit 2
BJD94_21490	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BJD94_21495	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BJD94_21505	COG3447	MASE1 domain protein
BJD94_21505	COG5001	Diguanylate cyclase
BJD94_21505	COG5002	protein histidine kinase activity
BJD94_21515	COG0583	DNA-binding transcription factor activity
BJD94_21520	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD94_21520	COG1042	CoA-binding domain protein
BJD94_21520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_21530	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD94_21540	COG0023	Translation Initiation Factor
BJD94_21555	COG0745	RESPONSE REGULATOR receiver
BJD94_21565	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD94_21570	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD94_21585	COG3706	GGDEF domain
BJD94_21595	COG0745	RESPONSE REGULATOR receiver
BJD94_21605	COG1846	Transcriptional regulator
BJD94_21610	COG0697	spore germination
BJD94_21620	COG4149	molybdate abc transporter
BJD94_21625	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD94_21645	COG4067	protein conserved in archaea
BJD94_21645	COG0189	ligase activity
BJD94_21655	COG0602	queuosine metabolic process
BJD94_21660	COG1328	CTP reductase activity
BJD94_21715	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD94_21720	COG3118	belongs to the thioredoxin family
BJD94_21725	COG2814	Major facilitator Superfamily
BJD94_21735	COG0534	Mate efflux family protein
BJD94_21755	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BJD94_21770	COG0848	biopolymer transport protein
BJD94_21775	COG0811	peptide transport
BJD94_21780	COG0811	peptide transport
BJD94_21810	COG2146	nitrite reductase [NAD(P)H] activity
BJD94_21815	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_21820	COG0840	transmembrane signaling receptor activity
BJD94_21850	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_21860	COG5001	Diguanylate cyclase
BJD94_21860	COG4251	negative regulation of phosphorylation
BJD94_21860	COG3706	GGDEF domain
BJD94_21860	COG2203	Gaf domain
BJD94_21870	COG0010	Belongs to the arginase family
BJD94_21875	COG0513	Belongs to the DEAD box helicase family
BJD94_21885	COG0523	cobalamin synthesis protein