locus-tag class description AL549_00030 PF02540 NAD synthase AL549_00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_00035 PF03473 MOSC domain AL549_00035 PF03476 MOSC N-terminal beta barrel domain AL549_00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_00035 PF03473 MOSC domain AL549_00035 PF03476 MOSC N-terminal beta barrel domain AL549_00040 PF01979 Amidohydrolase family AL549_00045 PF17151 Periplasmic sensor domain AL549_00045 PF00990 Diguanylate cyclase, GGDEF domain AL549_00050 PF05661 Protein of unknown function (DUF808) AL549_00080 PF00528 Binding-protein-dependent transport system inner membrane component AL549_00085 PF14785 Maltose transport system permease protein MalF P2 domain AL549_00085 PF00528 Binding-protein-dependent transport system inner membrane component AL549_00090 PF01547 Bacterial extracellular solute-binding protein AL549_00095 PF00005 ABC transporter AL549_00095 PF08402 TOBE domain AL549_00100 PF02397 Bacterial sugar transferase AL549_00110 PF02563 Polysaccharide biosynthesis/export protein AL549_00110 PF10531 SLBB domain AL549_00115 PF13614 AAA domain AL549_00115 PF13807 G-rich domain on putative tyrosine kinase AL549_00115 PF02706 Chain length determinant protein AL549_00120 PF00534 Glycosyl transferases group 1 AL549_00120 PF13439 Glycosyltransferase Family 4 AL549_00130 PF00534 Glycosyl transferases group 1 AL549_00130 PF13439 Glycosyltransferase Family 4 AL549_00145 PF00529 HlyD membrane-fusion protein of T1SS AL549_00150 PF00005 ABC transporter AL549_00150 PF00664 ABC transporter transmembrane region AL549_00160 PF00196 Bacterial regulatory proteins, luxR family AL549_00165 PF00196 Bacterial regulatory proteins, luxR family AL549_00175 PF02743 Cache domain AL549_00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_00175 PF00672 HAMP domain AL549_00180 PF17863 AAA lid domain AL549_00180 PF07726 ATPase family associated with various cellular activities (AAA) AL549_00185 PF01882 Protein of unknown function DUF58 AL549_00200 PF00092 von Willebrand factor type A domain AL549_00200 PF07584 Aerotolerance regulator N-terminal AL549_00210 PF00563 EAL domain AL549_00210 PF01590 GAF domain AL549_00210 PF00990 Diguanylate cyclase, GGDEF domain AL549_00210 PF00360 Phytochrome region AL549_00215 PF00005 ABC transporter AL549_00220 PF00528 Binding-protein-dependent transport system inner membrane component AL549_00225 PF00528 Binding-protein-dependent transport system inner membrane component AL549_00230 PF12849 PBP superfamily domain AL549_00235 PF00672 HAMP domain AL549_00235 PF12729 Four helix bundle sensory module for signal transduction AL549_00235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_00240 PF02743 Cache domain AL549_00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_00240 PF00672 HAMP domain AL549_00255 PF07715 TonB-dependent Receptor Plug Domain AL549_00255 PF00593 TonB dependent receptor AL549_00260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_00260 PF00326 Prolyl oligopeptidase family AL549_00265 PF00271 Helicase conserved C-terminal domain AL549_00265 PF00270 DEAD/DEAH box helicase AL549_00275 PF17969 L,D-transpeptidase C-terminal domain AL549_00275 PF01476 LysM domain AL549_00275 PF03734 L,D-transpeptidase catalytic domain AL549_00280 PF00875 DNA photolyase AL549_00280 PF03441 FAD binding domain of DNA photolyase AL549_00285 PF13411 MerR HTH family regulatory protein AL549_00290 PF08349 Protein of unknown function (DUF1722) AL549_00295 PF01048 Phosphorylase superfamily AL549_00310 PF00990 Diguanylate cyclase, GGDEF domain AL549_00315 PF11742 Protein of unknown function (DUF3302) AL549_00320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_00320 PF00529 HlyD membrane-fusion protein of T1SS AL549_00325 PF07155 ECF-type riboflavin transporter, S component AL549_00330 PF12558 ATP-binding cassette cobalt transporter AL549_00330 PF00005 ABC transporter AL549_00345 PF14685 Tricorn protease PDZ domain AL549_00345 PF03572 Peptidase family S41 AL549_00345 PF14684 Tricorn protease C1 domain AL549_00345 PF07676 WD40-like Beta Propeller Repeat AL549_00350 PF13302 Acetyltransferase (GNAT) domain AL549_00360 PF07238 PilZ domain AL549_00360 PF12945 Flagellar protein YcgR AL549_00365 PF00672 HAMP domain AL549_00365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_00375 PF00924 Mechanosensitive ion channel AL549_00380 PF00194 Eukaryotic-type carbonic anhydrase AL549_00385 PF12849 PBP superfamily domain AL549_00395 PF02321 Outer membrane efflux protein AL549_00400 PF00529 HlyD membrane-fusion protein of T1SS AL549_00405 PF03412 Peptidase C39 family AL549_00405 PF00005 ABC transporter AL549_00405 PF00664 ABC transporter transmembrane region AL549_00415 PF04076 Bacterial OB fold (BOF) protein AL549_00420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_00420 PF00512 His Kinase A (phospho-acceptor) domain AL549_00420 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_00420 PF00072 Response regulator receiver domain AL549_00425 PF00563 EAL domain AL549_00425 PF00990 Diguanylate cyclase, GGDEF domain AL549_00425 PF03707 Bacterial signalling protein N terminal repeat AL549_00430 PF00196 Bacterial regulatory proteins, luxR family AL549_00430 PF00072 Response regulator receiver domain AL549_00435 PF03707 Bacterial signalling protein N terminal repeat AL549_00435 PF00990 Diguanylate cyclase, GGDEF domain AL549_00435 PF00563 EAL domain AL549_00440 PF00072 Response regulator receiver domain AL549_00440 PF00196 Bacterial regulatory proteins, luxR family AL549_00450 PF01593 Flavin containing amine oxidoreductase AL549_00460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00460 PF03466 LysR substrate binding domain AL549_00480 PF08212 Lipocalin-like domain AL549_00530 PF00107 Zinc-binding dehydrogenase AL549_00530 PF08240 Alcohol dehydrogenase GroES-like domain AL549_00535 PF00155 Aminotransferase class I and II AL549_00540 PF00657 GDSL-like Lipase/Acylhydrolase AL549_00555 PF07690 Major Facilitator Superfamily AL549_00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00560 PF03466 LysR substrate binding domain AL549_00565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_00580 PF06628 Catalase-related immune-responsive AL549_00580 PF00199 Catalase AL549_00590 PF00080 Copper/zinc superoxide dismutase (SODC) AL549_00610 PF01966 HD domain AL549_00620 PF03466 LysR substrate binding domain AL549_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00625 PF01906 Putative heavy-metal-binding AL549_00635 PF00563 EAL domain AL549_00635 PF00990 Diguanylate cyclase, GGDEF domain AL549_00635 PF03707 Bacterial signalling protein N terminal repeat AL549_00645 PF07715 TonB-dependent Receptor Plug Domain AL549_00645 PF00593 TonB dependent receptor AL549_00650 PF13416 Bacterial extracellular solute-binding protein AL549_00675 PF07690 Major Facilitator Superfamily AL549_00685 PF10928 Protein of unknown function (DUF2810) AL549_00735 PF04013 Putative SAM-dependent RNA methyltransferase AL549_00740 PF08543 Phosphomethylpyrimidine kinase AL549_00745 PF01569 PAP2 superfamily AL549_00770 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL549_00775 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_00780 PF01323 DSBA-like thioredoxin domain AL549_00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00800 PF03466 LysR substrate binding domain AL549_00805 PF00106 short chain dehydrogenase AL549_00810 PF03466 LysR substrate binding domain AL549_00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00820 PF00072 Response regulator receiver domain AL549_00820 PF00486 Transcriptional regulatory protein, C terminal AL549_00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_00825 PF00672 HAMP domain AL549_00825 PF00512 His Kinase A (phospho-acceptor) domain AL549_00830 PF01219 Prokaryotic diacylglycerol kinase AL549_00835 PF00884 Sulfatase AL549_00835 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_00840 PF00884 Sulfatase AL549_00850 PF02903 Alpha amylase, N-terminal ig-like domain AL549_00850 PF16657 Maltogenic Amylase, C-terminal domain AL549_00850 PF00128 Alpha amylase, catalytic domain AL549_00855 PF04231 Endonuclease I AL549_00870 PF00990 Diguanylate cyclase, GGDEF domain AL549_00870 PF08448 PAS fold AL549_00880 PF00392 Bacterial regulatory proteins, gntR family AL549_00880 PF00155 Aminotransferase class I and II AL549_00910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AL549_00915 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_00920 PF00881 Nitroreductase family AL549_00930 PF03466 LysR substrate binding domain AL549_00930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00960 PF00375 Sodium:dicarboxylate symporter family AL549_00965 PF03466 LysR substrate binding domain AL549_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00970 PF00764 Arginosuccinate synthase AL549_00990 PF01638 HxlR-like helix-turn-helix AL549_00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_00995 PF03466 LysR substrate binding domain AL549_01015 PF01048 Phosphorylase superfamily AL549_01020 PF04973 Nicotinamide mononucleotide transporter AL549_01045 PF01752 Collagenase AL549_01045 PF08453 Peptidase family M9 N-terminal AL549_01045 PF04151 Bacterial pre-peptidase C-terminal domain AL549_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_01055 PF01048 Phosphorylase superfamily AL549_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_01060 PF03466 LysR substrate binding domain AL549_01070 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL549_01070 PF00384 Molybdopterin oxidoreductase AL549_01070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_01070 PF01568 Molydopterin dinucleotide binding domain AL549_01070 PF12838 4Fe-4S dicluster domain AL549_01100 PF00155 Aminotransferase class I and II AL549_01100 PF00392 Bacterial regulatory proteins, gntR family AL549_01115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_01125 PF12833 Helix-turn-helix domain AL549_01130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_01130 PF02378 Phosphotransferase system, EIIC AL549_01130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_01135 PF01238 Phosphomannose isomerase type I AL549_01155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_01155 PF18113 Rubredoxin binding C-terminal domain AL549_01160 PF00301 Rubredoxin AL549_01160 PF00753 Metallo-beta-lactamase superfamily AL549_01160 PF00258 Flavodoxin AL549_01165 PF01590 GAF domain AL549_01165 PF00158 Sigma-54 interaction domain AL549_01185 PF12833 Helix-turn-helix domain AL549_01190 PF00593 TonB dependent receptor AL549_01190 PF07715 TonB-dependent Receptor Plug Domain AL549_01200 PF11953 Domain of unknown function (DUF3470) AL549_01200 PF00037 4Fe-4S binding domain AL549_01205 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL549_01205 PF00588 SpoU rRNA Methylase family AL549_01220 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL549_01220 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL549_01225 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_01225 PF16353 Domain of unknown function(DUF4981) AL549_01225 PF02929 Beta galactosidase small chain AL549_01225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_01225 PF00703 Glycosyl hydrolases family 2 AL549_01230 PF13407 Periplasmic binding protein domain AL549_01235 PF00005 ABC transporter AL549_01240 PF02653 Branched-chain amino acid transport system / permease component AL549_01245 PF00356 Bacterial regulatory proteins, lacI family AL549_01260 PF00873 AcrB/AcrD/AcrF family AL549_01265 PF00990 Diguanylate cyclase, GGDEF domain AL549_01265 PF03707 Bacterial signalling protein N terminal repeat AL549_01265 PF00563 EAL domain AL549_01270 PF00849 RNA pseudouridylate synthase AL549_01305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_01305 PF00529 HlyD membrane-fusion protein of T1SS AL549_01315 PF01554 MatE AL549_01320 PF01915 Glycosyl hydrolase family 3 C-terminal domain AL549_01320 PF14310 Fibronectin type III-like domain AL549_01320 PF00933 Glycosyl hydrolase family 3 N terminal domain AL549_01325 PF12833 Helix-turn-helix domain AL549_01330 PF02264 LamB porin AL549_01335 PF00722 Glycosyl hydrolases family 16 AL549_01345 PF00356 Bacterial regulatory proteins, lacI family AL549_01355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_01355 PF00005 ABC transporter AL549_01360 PF00005 ABC transporter AL549_01360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_01365 PF00528 Binding-protein-dependent transport system inner membrane component AL549_01370 PF00528 Binding-protein-dependent transport system inner membrane component AL549_01375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_01385 PF00356 Bacterial regulatory proteins, lacI family AL549_01395 PF00232 Glycosyl hydrolase family 1 AL549_01400 PF00528 Binding-protein-dependent transport system inner membrane component AL549_01405 PF00528 Binding-protein-dependent transport system inner membrane component AL549_01415 PF00356 Bacterial regulatory proteins, lacI family AL549_01420 PF02264 LamB porin AL549_01435 PF00990 Diguanylate cyclase, GGDEF domain AL549_01440 PF00486 Transcriptional regulatory protein, C terminal AL549_01440 PF00072 Response regulator receiver domain AL549_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_01445 PF08521 Two-component sensor kinase N-terminal AL549_01445 PF00512 His Kinase A (phospho-acceptor) domain AL549_01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_01455 PF03466 LysR substrate binding domain AL549_01465 PF00675 Insulinase (Peptidase family M16) AL549_01465 PF05193 Peptidase M16 inactive domain AL549_01470 PF02690 Na+/Pi-cotransporter AL549_01475 PF01966 HD domain AL549_01480 PF02798 Glutathione S-transferase, N-terminal domain AL549_01485 PF00171 Aldehyde dehydrogenase family AL549_01500 PF02743 Cache domain AL549_01500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_01500 PF00672 HAMP domain AL549_01520 PF01470 Pyroglutamyl peptidase AL549_01530 PF01037 Lrp/AsnC ligand binding domain AL549_01535 PF01810 LysE type translocator AL549_01540 PF00919 Uncharacterized protein family UPF0004 AL549_01540 PF18693 TRAM domain AL549_01540 PF04055 Radical SAM superfamily AL549_01545 PF16591 Helical bimodular sensor domain AL549_01545 PF00672 HAMP domain AL549_01545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_01550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_01550 PF02806 Alpha amylase, C-terminal all-beta domain AL549_01550 PF00128 Alpha amylase, catalytic domain AL549_01555 PF02446 4-alpha-glucanotransferase AL549_01560 PF00343 Carbohydrate phosphorylase AL549_01565 PF00196 Bacterial regulatory proteins, luxR family AL549_01565 PF17874 MalT-like TPR region AL549_01580 PF02630 SCO1/SenC AL549_01585 PF04314 Copper chaperone PCu(A)C AL549_01590 PF03193 RsgA GTPase AL549_01595 PF00375 Sodium:dicarboxylate symporter family AL549_01600 PF08543 Phosphomethylpyrimidine kinase AL549_01605 PF13520 Amino acid permease AL549_01610 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_01610 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL549_01610 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_01625 PF11852 Domain of unknown function (DUF3372) AL549_01625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_01625 PF03714 Bacterial pullanase-associated domain AL549_01625 PF18494 Pullulanase Ins domain AL549_01625 PF17967 Pullulanase N2 domain AL549_01635 PF02903 Alpha amylase, N-terminal ig-like domain AL549_01635 PF00128 Alpha amylase, catalytic domain AL549_01635 PF16657 Maltogenic Amylase, C-terminal domain AL549_01640 PF01547 Bacterial extracellular solute-binding protein AL549_01650 PF07148 Maltose operon periplasmic protein precursor (MalM) AL549_01655 PF02264 LamB porin AL549_01660 PF00128 Alpha amylase, catalytic domain AL549_01660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_01665 PF17158 Membrane-associated sensor, integral membrane domain AL549_01665 PF00990 Diguanylate cyclase, GGDEF domain AL549_01670 PF00563 EAL domain AL549_01670 PF00990 Diguanylate cyclase, GGDEF domain AL549_01680 PF05726 Pirin C-terminal cupin domain AL549_01680 PF02678 Pirin AL549_01685 PF06865 Pyrimidine/purine nucleoside phosphorylase AL549_01695 PF00704 Glycosyl hydrolases family 18 AL549_01695 PF08329 Chitinase A, N-terminal domain AL549_01705 PF00440 Bacterial regulatory proteins, tetR family AL549_01705 PF08361 MAATS-type transcriptional repressor, C-terminal region AL549_01715 PF03600 Citrate transporter AL549_01730 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL549_01735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL549_01735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL549_01740 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_01740 PF06029 AlkA N-terminal domain AL549_01750 PF03466 LysR substrate binding domain AL549_01750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_01760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL549_01760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL549_01775 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL549_01785 PF03616 Sodium/glutamate symporter AL549_01790 PF03616 Sodium/glutamate symporter AL549_01800 PF17200 Single Cache domain 2 AL549_01800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_01800 PF00672 HAMP domain AL549_01805 PF04397 LytTr DNA-binding domain AL549_01805 PF00072 Response regulator receiver domain AL549_01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_01810 PF06580 Histidine kinase AL549_01810 PF07694 5TMR of 5TMR-LYT AL549_01825 PF12704 MacB-like periplasmic core domain AL549_01825 PF02687 FtsX-like permease family AL549_01830 PF00005 ABC transporter AL549_01840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_01840 PF03466 LysR substrate binding domain AL549_01850 PF01709 Transcriptional regulator AL549_01860 PF00512 His Kinase A (phospho-acceptor) domain AL549_01860 PF01627 Hpt domain AL549_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_01860 PF00072 Response regulator receiver domain AL549_01860 PF00672 HAMP domain AL549_01860 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_01870 PF13006 Insertion element 4 transposase N-terminal AL549_01870 PF01609 Transposase DDE domain AL549_01885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_01885 PF00005 ABC transporter AL549_01890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_01890 PF00005 ABC transporter AL549_01905 PF18607 ParA helix turn helix domain AL549_01905 PF13614 AAA domain AL549_01910 PF08775 ParB family AL549_01910 PF02195 ParB-like nuclease domain AL549_01915 PF13718 GNAT acetyltransferase 2 AL549_01915 PF05127 Helicase AL549_01925 PF00072 Response regulator receiver domain AL549_01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_01930 PF01627 Hpt domain AL549_01930 PF02895 Signal transducing histidine kinase, homodimeric domain AL549_01930 PF09078 CheY binding AL549_01930 PF01584 CheW-like domain AL549_01935 PF01584 CheW-like domain AL549_01940 PF01584 CheW-like domain AL549_01945 PF00672 HAMP domain AL549_01945 PF02203 Tar ligand binding domain homologue AL549_01945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_01950 PF01739 CheR methyltransferase, SAM binding domain AL549_01950 PF03705 CheR methyltransferase, all-alpha domain AL549_01955 PF03975 CheD chemotactic sensory transduction AL549_01960 PF01339 CheB methylesterase AL549_01960 PF00072 Response regulator receiver domain AL549_01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_01965 PF00672 HAMP domain AL549_01965 PF02203 Tar ligand binding domain homologue AL549_01975 PF00072 Response regulator receiver domain AL549_01975 PF00990 Diguanylate cyclase, GGDEF domain AL549_01995 PF02223 Thymidylate kinase AL549_02010 PF17848 Acetyl-coA carboxylase zinc finger domain AL549_02010 PF01039 Carboxyl transferase domain AL549_02015 PF03466 LysR substrate binding domain AL549_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02020 PF04151 Bacterial pre-peptidase C-terminal domain AL549_02020 PF08453 Peptidase family M9 N-terminal AL549_02020 PF01752 Collagenase AL549_02025 PF00300 Histidine phosphatase superfamily (branch 1) AL549_02030 PF00563 EAL domain AL549_02030 PF01590 GAF domain AL549_02030 PF00989 PAS fold AL549_02030 PF00990 Diguanylate cyclase, GGDEF domain AL549_02040 PF02378 Phosphotransferase system, EIIC AL549_02040 PF00367 phosphotransferase system, EIIB AL549_02045 PF13580 SIS domain AL549_02050 PF01418 Helix-turn-helix domain, rpiR family AL549_02050 PF01380 SIS domain AL549_02055 PF01189 16S rRNA methyltransferase RsmB/F AL549_02055 PF01029 NusB family AL549_02065 PF12464 Maltose acetyltransferase AL549_02065 PF14602 Hexapeptide repeat of succinyl-transferase AL549_02070 PF00166 Chaperonin 10 Kd subunit AL549_02075 PF00118 TCP-1/cpn60 chaperonin family AL549_02090 PF03412 Peptidase C39 family AL549_02090 PF00005 ABC transporter AL549_02090 PF00664 ABC transporter transmembrane region AL549_02105 PF00529 HlyD membrane-fusion protein of T1SS AL549_02110 PF02954 Bacterial regulatory protein, Fis family AL549_02110 PF00158 Sigma-54 interaction domain AL549_02110 PF00072 Response regulator receiver domain AL549_02115 PF02743 Cache domain AL549_02115 PF00512 His Kinase A (phospho-acceptor) domain AL549_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_02120 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_02120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL549_02130 PF12833 Helix-turn-helix domain AL549_02135 PF14850 DNA-binding domain of Proline dehydrogenase AL549_02135 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL549_02135 PF01619 Proline dehydrogenase AL549_02135 PF00171 Aldehyde dehydrogenase family AL549_02145 PF00474 Sodium:solute symporter family AL549_02150 PF01037 Lrp/AsnC ligand binding domain AL549_02160 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_02160 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_02160 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_02165 PF16385 Domain of unknown function AL549_02165 PF00884 Sulfatase AL549_02170 PF00884 Sulfatase AL549_02175 PF13186 Iron-sulfur cluster-binding domain AL549_02175 PF04055 Radical SAM superfamily AL549_02180 PF16347 Domain of unknown function (DUF4976) AL549_02190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_02195 PF00528 Binding-protein-dependent transport system inner membrane component AL549_02200 PF00528 Binding-protein-dependent transport system inner membrane component AL549_02200 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_02205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_02205 PF00005 ABC transporter AL549_02210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_02210 PF00672 HAMP domain AL549_02225 PF00916 Sulfate permease family AL549_02225 PF01740 STAS domain AL549_02230 PF16363 GDP-mannose 4,6 dehydratase AL549_02235 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL549_02235 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL549_02245 PF07470 Glycosyl Hydrolase Family 88 AL549_02250 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain AL549_02250 PF17385 Lacto-N-biose phosphorylase central domain AL549_02250 PF17386 Lacto-N-biose phosphorylase C-terminal domain AL549_02255 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_02255 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_02255 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_02260 PF00005 ABC transporter AL549_02260 PF00664 ABC transporter transmembrane region AL549_02275 PF01261 Xylose isomerase-like TIM barrel AL549_02280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_02290 PF00596 Class II Aldolase and Adducin N-terminal domain AL549_02295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_02300 PF03611 PTS system sugar-specific permease component AL549_02305 PF00455 DeoR C terminal sensor domain AL549_02305 PF08220 DeoR-like helix-turn-helix domain AL549_02315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL549_02320 PF04399 Glutaredoxin 2, C terminal domain AL549_02320 PF13417 Glutathione S-transferase, N-terminal domain AL549_02330 PF03466 LysR substrate binding domain AL549_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02335 PF10688 Bacterial inner membrane protein AL549_02340 PF01081 KDPG and KHG aldolase AL549_02345 PF00294 pfkB family carbohydrate kinase AL549_02350 PF02614 Glucuronate isomerase AL549_02355 PF01232 Mannitol dehydrogenase Rossmann domain AL549_02355 PF08125 Mannitol dehydrogenase C-terminal domain AL549_02360 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_02365 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_02370 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_02375 PF07729 FCD domain AL549_02375 PF00392 Bacterial regulatory proteins, gntR family AL549_02380 PF03786 D-mannonate dehydratase (UxuA) AL549_02385 PF00271 Helicase conserved C-terminal domain AL549_02385 PF00270 DEAD/DEAH box helicase AL549_02390 PF00155 Aminotransferase class I and II AL549_02395 PF03553 Na+/H+ antiporter family AL549_02400 PF00356 Bacterial regulatory proteins, lacI family AL549_02405 PF00857 Isochorismatase family AL549_02410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_02410 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_02415 PF00892 EamA-like transporter family AL549_02425 PF03473 MOSC domain AL549_02425 PF03475 3-alpha domain AL549_02445 PF02056 Family 4 glycosyl hydrolase AL549_02445 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL549_02450 PF03466 LysR substrate binding domain AL549_02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02465 PF12852 Cupin AL549_02465 PF12833 Helix-turn-helix domain AL549_02470 PF00462 Glutaredoxin AL549_02485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_02485 PF00672 HAMP domain AL549_02505 PF01625 Peptide methionine sulfoxide reductase AL549_02510 PF01641 SelR domain AL549_02535 PF14864 Alkyl sulfatase C-terminal AL549_02535 PF14863 Alkyl sulfatase dimerisation AL549_02535 PF00753 Metallo-beta-lactamase superfamily AL549_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02540 PF03466 LysR substrate binding domain AL549_02545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL549_02545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_02550 PF12852 Cupin AL549_02550 PF12833 Helix-turn-helix domain AL549_02555 PF00892 EamA-like transporter family AL549_02560 PF00455 DeoR C terminal sensor domain AL549_02560 PF08220 DeoR-like helix-turn-helix domain AL549_02565 PF08220 DeoR-like helix-turn-helix domain AL549_02565 PF00455 DeoR C terminal sensor domain AL549_02570 PF08013 Tagatose 6 phosphate kinase AL549_02575 PF01380 SIS domain AL549_02580 PF03830 PTS system sorbose subfamily IIB component AL549_02585 PF03609 PTS system sorbose-specific iic component AL549_02590 PF03613 PTS system mannose/fructose/sorbose family IID component AL549_02595 PF03610 PTS system fructose IIA component AL549_02600 PF01979 Amidohydrolase family AL549_02605 PF01116 Fructose-bisphosphate aldolase class-II AL549_02610 PF12848 ABC transporter AL549_02610 PF00005 ABC transporter AL549_02615 PF00593 TonB dependent receptor AL549_02615 PF07715 TonB-dependent Receptor Plug Domain AL549_02625 PF01032 FecCD transport family AL549_02630 PF01497 Periplasmic binding protein AL549_02635 PF00005 ABC transporter AL549_02660 PF12704 MacB-like periplasmic core domain AL549_02660 PF02687 FtsX-like permease family AL549_02660 PF00005 ABC transporter AL549_02665 PF00005 ABC transporter AL549_02665 PF12704 MacB-like periplasmic core domain AL549_02665 PF02687 FtsX-like permease family AL549_02670 PF02687 FtsX-like permease family AL549_02670 PF12704 MacB-like periplasmic core domain AL549_02670 PF00005 ABC transporter AL549_02675 PF00929 Exonuclease AL549_02675 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_02675 PF14579 Helix-hairpin-helix motif AL549_02675 PF11490 DNA polymerase III polC-type N-terminus II AL549_02675 PF02811 PHP domain AL549_02675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_02695 PF00990 Diguanylate cyclase, GGDEF domain AL549_02695 PF17158 Membrane-associated sensor, integral membrane domain AL549_02710 PF01717 Cobalamin-independent synthase, Catalytic domain AL549_02710 PF08267 Cobalamin-independent synthase, N-terminal domain AL549_02720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_02720 PF00529 HlyD membrane-fusion protein of T1SS AL549_02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02725 PF03466 LysR substrate binding domain AL549_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_02730 PF00512 His Kinase A (phospho-acceptor) domain AL549_02730 PF00672 HAMP domain AL549_02735 PF00072 Response regulator receiver domain AL549_02735 PF00486 Transcriptional regulatory protein, C terminal AL549_02745 PF14863 Alkyl sulfatase dimerisation AL549_02745 PF14864 Alkyl sulfatase C-terminal AL549_02745 PF00753 Metallo-beta-lactamase superfamily AL549_02755 PF00512 His Kinase A (phospho-acceptor) domain AL549_02755 PF02743 Cache domain AL549_02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_02760 PF00158 Sigma-54 interaction domain AL549_02760 PF02954 Bacterial regulatory protein, Fis family AL549_02760 PF00072 Response regulator receiver domain AL549_02775 PF01266 FAD dependent oxidoreductase AL549_02785 PF00072 Response regulator receiver domain AL549_02790 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_02790 PF00072 Response regulator receiver domain AL549_02790 PF01627 Hpt domain AL549_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_02790 PF00512 His Kinase A (phospho-acceptor) domain AL549_02790 PF00672 HAMP domain AL549_02795 PF12729 Four helix bundle sensory module for signal transduction AL549_02795 PF00672 HAMP domain AL549_02795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_02805 PF13599 Pentapeptide repeats (9 copies) AL549_02815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_02815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_02820 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_02820 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_02820 PF03413 Peptidase propeptide and YPEB domain AL549_02820 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_02820 PF04151 Bacterial pre-peptidase C-terminal domain AL549_02850 PF00270 DEAD/DEAH box helicase AL549_02850 PF00271 Helicase conserved C-terminal domain AL549_02855 PF00561 alpha/beta hydrolase fold AL549_02860 PF00881 Nitroreductase family AL549_02870 PF03466 LysR substrate binding domain AL549_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02880 PF00175 Oxidoreductase NAD-binding domain AL549_02880 PF00970 Oxidoreductase FAD-binding domain AL549_02885 PF00892 EamA-like transporter family AL549_02890 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_02910 PF07690 Major Facilitator Superfamily AL549_02915 PF12833 Helix-turn-helix domain AL549_02915 PF02311 AraC-like ligand binding domain AL549_02930 PF03466 LysR substrate binding domain AL549_02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_02935 PF07519 Tannase and feruloyl esterase AL549_02945 PF06942 GlpM protein AL549_02950 PF03150 Di-haem cytochrome c peroxidase AL549_02950 PF00034 Cytochrome c AL549_02960 PF02001 Protein of unknown function DUF134 AL549_02975 PF00009 Elongation factor Tu GTP binding domain AL549_02975 PF14492 Elongation Factor G, domain II AL549_02975 PF00679 Elongation factor G C-terminus AL549_02975 PF03144 Elongation factor Tu domain 2 AL549_02975 PF03764 Elongation factor G, domain IV AL549_02980 PF00583 Acetyltransferase (GNAT) family AL549_02985 PF17151 Periplasmic sensor domain AL549_02985 PF00990 Diguanylate cyclase, GGDEF domain AL549_03000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_03000 PF00672 HAMP domain AL549_03000 PF00512 His Kinase A (phospho-acceptor) domain AL549_03005 PF00486 Transcriptional regulatory protein, C terminal AL549_03005 PF00072 Response regulator receiver domain AL549_03010 PF02378 Phosphotransferase system, EIIC AL549_03010 PF00367 phosphotransferase system, EIIB AL549_03020 PF09278 MerR, DNA binding AL549_03020 PF00376 MerR family regulatory protein AL549_03025 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL549_03030 PF12833 Helix-turn-helix domain AL549_03035 PF01161 Phosphatidylethanolamine-binding protein AL549_03040 PF00293 NUDIX domain AL549_03045 PF00672 HAMP domain AL549_03045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_03045 PF00512 His Kinase A (phospho-acceptor) domain AL549_03045 PF01627 Hpt domain AL549_03045 PF00072 Response regulator receiver domain AL549_03045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_03055 PF13533 Biotin-lipoyl like AL549_03060 PF00873 AcrB/AcrD/AcrF family AL549_03070 PF00924 Mechanosensitive ion channel AL549_03090 PF00583 Acetyltransferase (GNAT) family AL549_03090 PF00795 Carbon-nitrogen hydrolase AL549_03115 PF09339 IclR helix-turn-helix domain AL549_03115 PF01614 Bacterial transcriptional regulator AL549_03125 PF10688 Bacterial inner membrane protein AL549_03130 PF07883 Cupin domain AL549_03150 PF00892 EamA-like transporter family AL549_03155 PF00294 pfkB family carbohydrate kinase AL549_03160 PF01081 KDPG and KHG aldolase AL549_03170 PF06917 Periplasmic pectate lyase AL549_03185 PF13229 Right handed beta helix region AL549_03190 PF00474 Sodium:solute symporter family AL549_03195 PF14583 Oligogalacturonate lyase AL549_03200 PF00128 Alpha amylase, catalytic domain AL549_03210 PF07670 Nucleoside recognition AL549_03215 PF07670 Nucleoside recognition AL549_03220 PF01546 Peptidase family M20/M25/M40 AL549_03220 PF07687 Peptidase dimerisation domain AL549_03255 PF01022 Bacterial regulatory protein, arsR family AL549_03260 PF01758 Sodium Bile acid symporter family AL549_03280 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_03280 PF00884 Sulfatase AL549_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_03285 PF03466 LysR substrate binding domain AL549_03295 PF14863 Alkyl sulfatase dimerisation AL549_03295 PF14864 Alkyl sulfatase C-terminal AL549_03295 PF00753 Metallo-beta-lactamase superfamily AL549_03305 PF13533 Biotin-lipoyl like AL549_03315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_03320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_03320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL549_03325 PF01479 S4 domain AL549_03325 PF00579 tRNA synthetases class I (W and Y) AL549_03330 PF00196 Bacterial regulatory proteins, luxR family AL549_03330 PF00072 Response regulator receiver domain AL549_03335 PF02567 Phenazine biosynthesis-like protein AL549_03340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_03340 PF03466 LysR substrate binding domain AL549_03345 PF13417 Glutathione S-transferase, N-terminal domain AL549_03345 PF00043 Glutathione S-transferase, C-terminal domain AL549_03350 PF13407 Periplasmic binding protein domain AL549_03355 PF03707 Bacterial signalling protein N terminal repeat AL549_03355 PF00990 Diguanylate cyclase, GGDEF domain AL549_03355 PF00563 EAL domain AL549_03360 PF02954 Bacterial regulatory protein, Fis family AL549_03360 PF01590 GAF domain AL549_03360 PF00158 Sigma-54 interaction domain AL549_03365 PF00171 Aldehyde dehydrogenase family AL549_03375 PF01595 Cyclin M transmembrane N-terminal domain AL549_03375 PF03471 Transporter associated domain AL549_03375 PF00571 CBS domain AL549_03380 PF00041 Fibronectin type III domain AL549_03380 PF12561 ToxR activated gene A lipoprotein domain AL549_03385 PF01327 Polypeptide deformylase AL549_03390 PF03611 PTS system sugar-specific permease component AL549_03400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_03405 PF00356 Bacterial regulatory proteins, lacI family AL549_03410 PF00175 Oxidoreductase NAD-binding domain AL549_03410 PF00970 Oxidoreductase FAD-binding domain AL549_03410 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_03425 PF16326 ABC transporter C-terminal domain AL549_03425 PF12848 ABC transporter AL549_03425 PF00005 ABC transporter AL549_03430 PF03222 Tryptophan/tyrosine permease family AL549_03435 PF01212 Beta-eliminating lyase AL549_03445 PF00873 AcrB/AcrD/AcrF family AL549_03450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_03465 PF00753 Metallo-beta-lactamase superfamily AL549_03470 PF08443 RimK-like ATP-grasp domain AL549_03470 PF18030 RimK PreATP-grasp domain AL549_03475 PF18030 RimK PreATP-grasp domain AL549_03475 PF08443 RimK-like ATP-grasp domain AL549_03485 PF00668 Condensation domain AL549_03485 PF13193 AMP-binding enzyme C-terminal domain AL549_03485 PF00550 Phosphopantetheine attachment site AL549_03485 PF00501 AMP-binding enzyme AL549_03485 PF00975 Thioesterase domain AL549_03490 PF07715 TonB-dependent Receptor Plug Domain AL549_03495 PF01497 Periplasmic binding protein AL549_03505 PF13193 AMP-binding enzyme C-terminal domain AL549_03505 PF00501 AMP-binding enzyme AL549_03515 PF00550 Phosphopantetheine attachment site AL549_03515 PF00857 Isochorismatase family AL549_03520 PF08021 Siderophore-interacting FAD-binding domain AL549_03520 PF04954 Siderophore-interacting protein AL549_03525 PF13193 AMP-binding enzyme C-terminal domain AL549_03525 PF00501 AMP-binding enzyme AL549_03530 PF00425 chorismate binding enzyme AL549_03540 PF00793 DAHP synthetase I family AL549_03545 PF13193 AMP-binding enzyme C-terminal domain AL549_03545 PF00668 Condensation domain AL549_03545 PF00501 AMP-binding enzyme AL549_03545 PF00550 Phosphopantetheine attachment site AL549_03545 PF00975 Thioesterase domain AL549_03550 PF07993 Male sterility protein AL549_03550 PF13193 AMP-binding enzyme C-terminal domain AL549_03550 PF00501 AMP-binding enzyme AL549_03550 PF00550 Phosphopantetheine attachment site AL549_03550 PF00668 Condensation domain AL549_03555 PF01648 4'-phosphopantetheinyl transferase superfamily AL549_03555 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL549_03570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_03575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_03575 PF00672 HAMP domain AL549_03575 PF12729 Four helix bundle sensory module for signal transduction AL549_03585 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_03585 PF17996 Carbohydrate esterase 2 N-terminal AL549_03590 PF00563 EAL domain AL549_03590 PF00990 Diguanylate cyclase, GGDEF domain AL549_03590 PF08448 PAS fold AL549_03605 PF00528 Binding-protein-dependent transport system inner membrane component AL549_03610 PF00528 Binding-protein-dependent transport system inner membrane component AL549_03615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_03620 PF00005 ABC transporter AL549_03625 PF04170 NlpE N-terminal domain AL549_03625 PF17185 NlpE C-terminal OB domain AL549_03640 PF02378 Phosphotransferase system, EIIC AL549_03680 PF07690 Major Facilitator Superfamily AL549_03700 PF02589 LUD domain AL549_03705 PF02589 LUD domain AL549_03705 PF11870 Domain of unknown function (DUF3390) AL549_03705 PF13183 4Fe-4S dicluster domain AL549_03710 PF02754 Cysteine-rich domain AL549_03715 PF02652 L-lactate permease AL549_03720 PF03466 LysR substrate binding domain AL549_03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_03725 PF00326 Prolyl oligopeptidase family AL549_03725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_03730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_03730 PF00005 ABC transporter AL549_03740 PF13654 AAA domain AL549_03740 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_03745 PF07969 Amidohydrolase family AL549_03750 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL549_03755 PF12833 Helix-turn-helix domain AL549_03760 PF00571 CBS domain AL549_03760 PF03448 MgtE intracellular N domain AL549_03760 PF01769 Divalent cation transporter AL549_03785 PF00072 Response regulator receiver domain AL549_03785 PF00486 Transcriptional regulatory protein, C terminal AL549_03790 PF16527 Two-component sensor protein CpxA, periplasmic domain AL549_03790 PF00672 HAMP domain AL549_03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_03790 PF00512 His Kinase A (phospho-acceptor) domain AL549_03800 PF00392 Bacterial regulatory proteins, gntR family AL549_03800 PF00155 Aminotransferase class I and II AL549_03805 PF13230 Glutamine amidotransferases class-II AL549_03810 PF13520 Amino acid permease AL549_03820 PF01037 Lrp/AsnC ligand binding domain AL549_03825 PF03466 LysR substrate binding domain AL549_03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_03835 PF08534 Redoxin AL549_03835 PF00462 Glutaredoxin AL549_03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_03845 PF03466 LysR substrate binding domain AL549_03855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_03855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_03870 PF00672 HAMP domain AL549_03870 PF00072 Response regulator receiver domain AL549_03870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_03870 PF01627 Hpt domain AL549_03870 PF00512 His Kinase A (phospho-acceptor) domain AL549_03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_03875 PF01554 MatE AL549_03880 PF04363 Protein of unknown function (DUF496) AL549_03890 PF04337 Protein of unknown function, DUF480 AL549_03895 PF01541 GIY-YIG catalytic domain AL549_03905 PF13407 Periplasmic binding protein domain AL549_03910 PF09308 LuxQ, periplasmic AL549_03910 PF00512 His Kinase A (phospho-acceptor) domain AL549_03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_03910 PF00072 Response regulator receiver domain AL549_03925 PF01037 Lrp/AsnC ligand binding domain AL549_03950 PF07549 SecD/SecF GG Motif AL549_03950 PF13721 SecD export protein N-terminal TM region AL549_03950 PF02355 Protein export membrane protein AL549_03955 PF07549 SecD/SecF GG Motif AL549_03955 PF02355 Protein export membrane protein AL549_03960 PF00106 short chain dehydrogenase AL549_03965 PF00108 Thiolase, N-terminal domain AL549_03965 PF02803 Thiolase, C-terminal domain AL549_03975 PF00561 alpha/beta hydrolase fold AL549_03975 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL549_03985 PF01979 Amidohydrolase family AL549_03990 PF00480 ROK family AL549_03995 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AL549_04000 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_04005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_04010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_04015 PF00701 Dihydrodipicolinate synthetase family AL549_04020 PF01418 Helix-turn-helix domain, rpiR family AL549_04020 PF01380 SIS domain AL549_04025 PF01344 Kelch motif AL549_04030 PF07646 Kelch motif AL549_04035 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_04040 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL549_04045 PF01568 Molydopterin dinucleotide binding domain AL549_04045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_04045 PF00384 Molybdopterin oxidoreductase AL549_04055 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL549_04055 PF07730 Histidine kinase AL549_04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_04055 PF00672 HAMP domain AL549_04060 PF00072 Response regulator receiver domain AL549_04060 PF00196 Bacterial regulatory proteins, luxR family AL549_04080 PF03853 YjeF-related protein N-terminus AL549_04080 PF01256 Carbohydrate kinase AL549_04090 PF00478 IMP dehydrogenase / GMP reductase domain AL549_04130 PF13276 HTH-like domain AL549_04130 PF13333 Integrase core domain AL549_04130 PF00665 Integrase core domain AL549_04140 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_04140 PF14760 Rnk N-terminus AL549_04145 PF00583 Acetyltransferase (GNAT) family AL549_04155 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_04170 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_04180 PF00270 DEAD/DEAH box helicase AL549_04180 PF00271 Helicase conserved C-terminal domain AL549_04190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_04195 PF01047 MarR family AL549_04210 PF12706 Beta-lactamase superfamily domain AL549_04220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_04230 PF00005 ABC transporter AL549_04240 PF01418 Helix-turn-helix domain, rpiR family AL549_04240 PF01380 SIS domain AL549_04240 PF02685 Glucokinase AL549_04250 PF07969 Amidohydrolase family AL549_04260 PF00474 Sodium:solute symporter family AL549_04265 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_04265 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_04275 PF01042 Endoribonuclease L-PSP AL549_04280 PF01590 GAF domain AL549_04280 PF00990 Diguanylate cyclase, GGDEF domain AL549_04280 PF00563 EAL domain AL549_04280 PF00360 Phytochrome region AL549_04285 PF03466 LysR substrate binding domain AL549_04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_04290 PF07690 Major Facilitator Superfamily AL549_04300 PF00462 Glutaredoxin AL549_04305 PF00892 EamA-like transporter family AL549_04310 PF03707 Bacterial signalling protein N terminal repeat AL549_04310 PF00990 Diguanylate cyclase, GGDEF domain AL549_04310 PF00563 EAL domain AL549_04320 PF00578 AhpC/TSA family AL549_04330 PF02566 OsmC-like protein AL549_04335 PF01047 MarR family AL549_04340 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL549_04360 PF01810 LysE type translocator AL549_04370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_04370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_04370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_04370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_04375 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL549_04375 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL549_04380 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL549_04385 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL549_04390 PF00510 Cytochrome c oxidase subunit III AL549_04410 PF02628 Cytochrome oxidase assembly protein AL549_04415 PF01040 UbiA prenyltransferase family AL549_04420 PF13488 Glycine zipper AL549_04420 PF00691 OmpA family AL549_04425 PF00793 DAHP synthetase I family AL549_04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_04430 PF08447 PAS fold AL549_04435 PF03707 Bacterial signalling protein N terminal repeat AL549_04435 PF00563 EAL domain AL549_04435 PF00990 Diguanylate cyclase, GGDEF domain AL549_04445 PF02779 Transketolase, pyrimidine binding domain AL549_04445 PF02780 Transketolase, C-terminal domain AL549_04445 PF00456 Transketolase, thiamine diphosphate binding domain AL549_04450 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL549_04460 PF08329 Chitinase A, N-terminal domain AL549_04460 PF00704 Glycosyl hydrolases family 18 AL549_04465 PF03707 Bacterial signalling protein N terminal repeat AL549_04465 PF00563 EAL domain AL549_04465 PF00990 Diguanylate cyclase, GGDEF domain AL549_04470 PF00581 Rhodanese-like domain AL549_04475 PF00899 ThiF family AL549_04480 PF00994 Probable molybdopterin binding domain AL549_04480 PF03453 MoeA N-terminal region (domain I and II) AL549_04480 PF03454 MoeA C-terminal region (domain IV) AL549_04485 PF01227 GTP cyclohydrolase I AL549_04490 PF01566 Natural resistance-associated macrophage protein AL549_04500 PF00654 Voltage gated chloride channel AL549_04520 PF00248 Aldo/keto reductase family AL549_04530 PF01546 Peptidase family M20/M25/M40 AL549_04530 PF07687 Peptidase dimerisation domain AL549_04535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_04540 PF13533 Biotin-lipoyl like AL549_04545 PF00873 AcrB/AcrD/AcrF family AL549_04550 PF12729 Four helix bundle sensory module for signal transduction AL549_04550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_04550 PF00672 HAMP domain AL549_04555 PF13419 Haloacid dehalogenase-like hydrolase AL549_04560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_04560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_04590 PF00313 'Cold-shock' DNA-binding domain AL549_04595 PF03889 Alternative ribosome-rescue factor A AL549_04605 PF00990 Diguanylate cyclase, GGDEF domain AL549_04615 PF01238 Phosphomannose isomerase type I AL549_04620 PF07690 Major Facilitator Superfamily AL549_04625 PF05231 MASE1 AL549_04625 PF07730 Histidine kinase AL549_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_04630 PF00072 Response regulator receiver domain AL549_04630 PF00196 Bacterial regulatory proteins, luxR family AL549_04635 PF07690 Major Facilitator Superfamily AL549_04650 PF00107 Zinc-binding dehydrogenase AL549_04650 PF16884 N-terminal domain of oxidoreductase AL549_04655 PF16925 Tetracyclin repressor-like, C-terminal domain AL549_04655 PF00440 Bacterial regulatory proteins, tetR family AL549_04660 PF01699 Sodium/calcium exchanger protein AL549_04670 PF00313 'Cold-shock' DNA-binding domain AL549_04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_04675 PF13192 Thioredoxin domain AL549_04680 PF00578 AhpC/TSA family AL549_04680 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL549_04685 PF00682 HMGL-like AL549_04690 PF00378 Enoyl-CoA hydratase/isomerase AL549_04695 PF01039 Carboxyl transferase domain AL549_04700 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_04700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_04700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_04705 PF09278 MerR, DNA binding AL549_04705 PF00376 MerR family regulatory protein AL549_04710 PF00108 Thiolase, N-terminal domain AL549_04710 PF02803 Thiolase, C-terminal domain AL549_04715 PF00171 Aldehyde dehydrogenase family AL549_04720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_04720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_04720 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_04725 PF00378 Enoyl-CoA hydratase/isomerase AL549_04730 PF00378 Enoyl-CoA hydratase/isomerase AL549_04735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_04735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_04760 PF03412 Peptidase C39 family AL549_04760 PF00005 ABC transporter AL549_04760 PF00664 ABC transporter transmembrane region AL549_04770 PF00664 ABC transporter transmembrane region AL549_04770 PF00005 ABC transporter AL549_04770 PF03412 Peptidase C39 family AL549_04780 PF02794 RTX toxin acyltransferase family AL549_04785 PF16671 Actin cross-linking domain AL549_04785 PF11713 Peptidase C80 family AL549_04785 PF12146 Serine aminopeptidase, S33 AL549_04785 PF07634 RtxA repeat AL549_04785 PF11647 Membrane Localization Domain AL549_04790 PF01168 Alanine racemase, N-terminal domain AL549_04790 PF00842 Alanine racemase, C-terminal domain AL549_04795 PF00672 HAMP domain AL549_04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_04805 PF01012 Electron transfer flavoprotein domain AL549_04810 PF00766 Electron transfer flavoprotein FAD-binding domain AL549_04810 PF01012 Electron transfer flavoprotein domain AL549_04815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_04815 PF00364 Biotin-requiring enzyme AL549_04815 PF02817 e3 binding domain AL549_04820 PF02780 Transketolase, C-terminal domain AL549_04820 PF02779 Transketolase, pyrimidine binding domain AL549_04825 PF00676 Dehydrogenase E1 component AL549_04830 PF00962 Adenosine/AMP deaminase AL549_04840 PF11849 Domain of unknown function (DUF3369) AL549_04845 PF00512 His Kinase A (phospho-acceptor) domain AL549_04845 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_04860 PF00892 EamA-like transporter family AL549_04870 PF03466 LysR substrate binding domain AL549_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_04880 PF13193 AMP-binding enzyme C-terminal domain AL549_04880 PF00501 AMP-binding enzyme AL549_04885 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL549_04890 PF01329 Pterin 4 alpha carbinolamine dehydratase AL549_04895 PF00563 EAL domain AL549_04895 PF03707 Bacterial signalling protein N terminal repeat AL549_04895 PF00990 Diguanylate cyclase, GGDEF domain AL549_04910 PF12843 Putative quorum-sensing-regulated virulence factor AL549_04930 PF00069 Protein kinase domain AL549_04930 PF03793 PASTA domain AL549_04950 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL549_04950 PF00691 OmpA family AL549_05010 PF00004 ATPase family associated with various cellular activities (AAA) AL549_05010 PF07724 AAA domain (Cdc48 subfamily) AL549_05010 PF17871 AAA lid domain AL549_05010 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_05020 PF04717 Type VI secretion system, phage-baseplate injector AL549_05035 PF03527 RHS protein AL549_05050 PF04634 Protein of unknown function, DUF600 AL549_05095 PF01435 Peptidase family M48 AL549_05100 PF04011 LemA family AL549_05105 PF03606 C4-dicarboxylate anaerobic carrier AL549_05110 PF07963 Prokaryotic N-terminal methylation motif AL549_05110 PF08334 Type II secretion system (T2SS), protein G AL549_05115 PF01523 Putative modulator of DNA gyrase AL549_05120 PF01523 Putative modulator of DNA gyrase AL549_05125 PF03009 Glycerophosphoryl diester phosphodiesterase family AL549_05130 PF07690 Major Facilitator Superfamily AL549_05135 PF07968 Leukocidin/Hemolysin toxin family AL549_05135 PF00652 Ricin-type beta-trefoil lectin domain AL549_05145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05145 PF00672 HAMP domain AL549_05150 PF00672 HAMP domain AL549_05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05155 PF00128 Alpha amylase, catalytic domain AL549_05160 PF00583 Acetyltransferase (GNAT) family AL549_05165 PF04324 BFD-like [2Fe-2S] binding domain AL549_05165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_05165 PF00384 Molybdopterin oxidoreductase AL549_05165 PF01568 Molydopterin dinucleotide binding domain AL549_05170 PF10414 Sirohaem synthase dimerisation region AL549_05170 PF14824 Sirohaem biosynthesis protein central AL549_05170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_05175 PF02885 Glycosyl transferase family, helical bundle domain AL549_05175 PF00591 Glycosyl transferase family, a/b domain AL549_05180 PF01738 Dienelactone hydrolase family AL549_05185 PF08376 Nitrate and nitrite sensing AL549_05185 PF03861 ANTAR domain AL549_05190 PF00005 ABC transporter AL549_05195 PF00528 Binding-protein-dependent transport system inner membrane component AL549_05200 PF00005 ABC transporter AL549_05205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_05205 PF13806 Rieske-like [2Fe-2S] domain AL549_05205 PF04324 BFD-like [2Fe-2S] binding domain AL549_05205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_05205 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_05220 PF00990 Diguanylate cyclase, GGDEF domain AL549_05230 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL549_05230 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL549_05240 PF00270 DEAD/DEAH box helicase AL549_05240 PF00271 Helicase conserved C-terminal domain AL549_05245 PF00491 Arginase family AL549_05255 PF01590 GAF domain AL549_05255 PF00360 Phytochrome region AL549_05255 PF00990 Diguanylate cyclase, GGDEF domain AL549_05255 PF00563 EAL domain AL549_05260 PF01339 CheB methylesterase AL549_05265 PF03705 CheR methyltransferase, all-alpha domain AL549_05265 PF01739 CheR methyltransferase, SAM binding domain AL549_05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_05270 PF00672 HAMP domain AL549_05270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_05270 PF00512 His Kinase A (phospho-acceptor) domain AL549_05270 PF00072 Response regulator receiver domain AL549_05270 PF01627 Hpt domain AL549_05295 PF17200 Single Cache domain 2 AL549_05295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05295 PF00672 HAMP domain AL549_05300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_05300 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_05300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_05300 PF04324 BFD-like [2Fe-2S] binding domain AL549_05305 PF13806 Rieske-like [2Fe-2S] domain AL549_05315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_05315 PF10414 Sirohaem synthase dimerisation region AL549_05315 PF14824 Sirohaem biosynthesis protein central AL549_05335 PF01618 MotA/TolQ/ExbB proton channel family AL549_05340 PF01618 MotA/TolQ/ExbB proton channel family AL549_05345 PF02472 Biopolymer transport protein ExbD/TolR AL549_05360 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL549_05365 PF17200 Single Cache domain 2 AL549_05365 PF00672 HAMP domain AL549_05365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05375 PF11756 Nitrous oxide-stimulated promoter AL549_05380 PF01554 MatE AL549_05385 PF12833 Helix-turn-helix domain AL549_05390 PF07690 Major Facilitator Superfamily AL549_05395 PF00085 Thioredoxin AL549_05400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL549_05400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL549_05415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_05415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_05430 PF04143 Sulphur transport AL549_05445 PF00873 AcrB/AcrD/AcrF family AL549_05455 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL549_05455 PF03477 ATP cone domain AL549_05465 PF12729 Four helix bundle sensory module for signal transduction AL549_05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05465 PF00672 HAMP domain AL549_05470 PF00155 Aminotransferase class I and II AL549_05475 PF08443 RimK-like ATP-grasp domain AL549_05475 PF18030 RimK PreATP-grasp domain AL549_05480 PF13006 Insertion element 4 transposase N-terminal AL549_05480 PF01609 Transposase DDE domain AL549_05495 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL549_05495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_05505 PF00528 Binding-protein-dependent transport system inner membrane component AL549_05510 PF00005 ABC transporter AL549_05510 PF03459 TOBE domain AL549_05515 PF00892 EamA-like transporter family AL549_05520 PF01047 MarR family AL549_05530 PF00072 Response regulator receiver domain AL549_05530 PF00486 Transcriptional regulatory protein, C terminal AL549_05540 PF00990 Diguanylate cyclase, GGDEF domain AL549_05555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL549_05555 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL549_05555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL549_05560 PF02233 NAD(P) transhydrogenase beta subunit AL549_05570 PF00486 Transcriptional regulatory protein, C terminal AL549_05570 PF00072 Response regulator receiver domain AL549_05590 PF01253 Translation initiation factor SUI1 AL549_05600 PF07478 D-ala D-ala ligase C-terminus AL549_05600 PF01820 D-ala D-ala ligase N-terminus AL549_05605 PF05036 Sporulation related domain AL549_05610 PF13380 CoA binding domain AL549_05610 PF13607 Succinyl-CoA ligase like flavodoxin domain AL549_05610 PF00583 Acetyltransferase (GNAT) family AL549_05615 PF03466 LysR substrate binding domain AL549_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_05620 PF07715 TonB-dependent Receptor Plug Domain AL549_05620 PF00593 TonB dependent receptor AL549_05625 PF08448 PAS fold AL549_05625 PF13426 PAS domain AL549_05625 PF08447 PAS fold AL549_05625 PF05231 MASE1 AL549_05625 PF00990 Diguanylate cyclase, GGDEF domain AL549_05625 PF00563 EAL domain AL549_05635 PF03746 LamB/YcsF family AL549_05640 PF02682 Carboxyltransferase domain, subdomain C and D AL549_05645 PF02626 Carboxyltransferase domain, subdomain A and B AL549_05650 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL549_05650 PF01266 FAD dependent oxidoreductase AL549_05660 PF00005 ABC transporter AL549_05665 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_05670 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_05670 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_05670 PF07055 Enoyl reductase FAD binding domain AL549_05675 PF00498 FHA domain AL549_05675 PF00563 EAL domain AL549_05675 PF00990 Diguanylate cyclase, GGDEF domain AL549_05690 PF01556 DnaJ C terminal domain AL549_05690 PF00226 DnaJ domain AL549_05690 PF00684 DnaJ central domain AL549_05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_05710 PF03466 LysR substrate binding domain AL549_05715 PF00128 Alpha amylase, catalytic domain AL549_05715 PF16657 Maltogenic Amylase, C-terminal domain AL549_05725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_05725 PF12793 Sugar transport-related sRNA regulator N-term AL549_05735 PF03061 Thioesterase superfamily AL549_05750 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_05755 PF12262 Bacterial virulence factor lipase N-terminal AL549_05770 PF00491 Arginase family AL549_05775 PF00892 EamA-like transporter family AL549_05785 PF03741 Integral membrane protein TerC family AL549_05790 PF02872 5'-nucleotidase, C-terminal domain AL549_05790 PF00149 Calcineurin-like phosphoesterase AL549_05795 PF11398 Protein of unknown function (DUF2813) AL549_05800 PF06496 Protein of unknown function (DUF1097) AL549_05805 PF03466 LysR substrate binding domain AL549_05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_05810 PF01226 Formate/nitrite transporter AL549_05815 PF04264 YceI-like domain AL549_05820 PF01292 Prokaryotic cytochrome b561 AL549_05835 PF00271 Helicase conserved C-terminal domain AL549_05835 PF00270 DEAD/DEAH box helicase AL549_05840 PF04336 Acyl carrier protein phosphodiesterase AL549_05845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_05845 PF00672 HAMP domain AL549_05850 PF13419 Haloacid dehalogenase-like hydrolase AL549_05855 PF11849 Domain of unknown function (DUF3369) AL549_05870 PF00294 pfkB family carbohydrate kinase AL549_05875 PF01268 Formate--tetrahydrofolate ligase AL549_05880 PF00483 Nucleotidyl transferase AL549_05885 PF06483 Chitinase C AL549_05885 PF00704 Glycosyl hydrolases family 18 AL549_05890 PF06719 AraC-type transcriptional regulator N-terminus AL549_05890 PF12833 Helix-turn-helix domain AL549_05895 PF00465 Iron-containing alcohol dehydrogenase AL549_05900 PF02954 Bacterial regulatory protein, Fis family AL549_05900 PF00072 Response regulator receiver domain AL549_05900 PF14532 Sigma-54 interaction domain AL549_05905 PF00512 His Kinase A (phospho-acceptor) domain AL549_05905 PF02743 Cache domain AL549_05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_05915 PF07690 Major Facilitator Superfamily AL549_05920 PF00224 Pyruvate kinase, barrel domain AL549_05920 PF02887 Pyruvate kinase, alpha/beta domain AL549_05945 PF00356 Bacterial regulatory proteins, lacI family AL549_05945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_05950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_05950 PF00381 PTS HPr component phosphorylation site AL549_05955 PF00294 pfkB family carbohydrate kinase AL549_05960 PF02378 Phosphotransferase system, EIIC AL549_05960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_05970 PF00873 AcrB/AcrD/AcrF family AL549_05995 PF01571 Aminomethyltransferase folate-binding domain AL549_05995 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL549_06005 PF00464 Serine hydroxymethyltransferase AL549_06010 PF01597 Glycine cleavage H-protein AL549_06015 PF02347 Glycine cleavage system P-protein AL549_06035 PF00005 ABC transporter AL549_06035 PF00664 ABC transporter transmembrane region AL549_06045 PF00795 Carbon-nitrogen hydrolase AL549_06070 PF13533 Biotin-lipoyl like AL549_06075 PF07690 Major Facilitator Superfamily AL549_06095 PF08774 VRR-NUC domain AL549_06095 PF18081 Fanconi anemia-associated nuclease SAP domain AL549_06105 PF04055 Radical SAM superfamily AL549_06105 PF13186 Iron-sulfur cluster-binding domain AL549_06110 PF03781 Sulfatase-modifying factor enzyme 1 AL549_06115 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AL549_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_06120 PF03466 LysR substrate binding domain AL549_06135 PF00092 von Willebrand factor type A domain AL549_06150 PF07726 ATPase family associated with various cellular activities (AAA) AL549_06150 PF17863 AAA lid domain AL549_06155 PF04055 Radical SAM superfamily AL549_06155 PF13186 Iron-sulfur cluster-binding domain AL549_06160 PF00884 Sulfatase AL549_06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_06165 PF03466 LysR substrate binding domain AL549_06170 PF00884 Sulfatase AL549_06175 PF00871 Acetokinase family AL549_06180 PF00270 DEAD/DEAH box helicase AL549_06180 PF03880 DbpA RNA binding domain AL549_06180 PF00271 Helicase conserved C-terminal domain AL549_06185 PF08206 Ribonuclease B OB domain AL549_06185 PF00773 RNB domain AL549_06185 PF00575 S1 RNA binding domain AL549_06190 PF12833 Helix-turn-helix domain AL549_06200 PF12849 PBP superfamily domain AL549_06210 PF00563 EAL domain AL549_06210 PF00990 Diguanylate cyclase, GGDEF domain AL549_06210 PF03707 Bacterial signalling protein N terminal repeat AL549_06225 PF00498 FHA domain AL549_06225 PF00563 EAL domain AL549_06225 PF00990 Diguanylate cyclase, GGDEF domain AL549_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_06230 PF00512 His Kinase A (phospho-acceptor) domain AL549_06230 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_06230 PF00072 Response regulator receiver domain AL549_06235 PF03880 DbpA RNA binding domain AL549_06235 PF00270 DEAD/DEAH box helicase AL549_06235 PF00271 Helicase conserved C-terminal domain AL549_06240 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AL549_06245 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AL549_06260 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_06265 PF03781 Sulfatase-modifying factor enzyme 1 AL549_06285 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_06285 PF00672 HAMP domain AL549_06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_06285 PF01627 Hpt domain AL549_06285 PF00072 Response regulator receiver domain AL549_06285 PF00512 His Kinase A (phospho-acceptor) domain AL549_06290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_06295 PF02142 MGS-like domain AL549_06300 PF13361 UvrD-like helicase C-terminal domain AL549_06300 PF00580 UvrD/REP helicase N-terminal domain AL549_06300 PF12462 DNA helicase IV / RNA helicase N terminal AL549_06305 PF12805 FUSC-like inner membrane protein yccS AL549_06335 PF13411 MerR HTH family regulatory protein AL549_06340 PF00005 ABC transporter AL549_06345 PF01032 FecCD transport family AL549_06350 PF01032 FecCD transport family AL549_06365 PF12464 Maltose acetyltransferase AL549_06365 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_06370 PF12431 Transcriptional regulator AL549_06370 PF00072 Response regulator receiver domain AL549_06375 PF00989 PAS fold AL549_06375 PF17203 Single cache domain 3 AL549_06375 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL549_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_06380 PF00939 Sodium:sulfate symporter transmembrane region AL549_06450 PF00437 Type II/IV secretion system protein AL549_06465 PF00263 Bacterial type II and III secretion system protein AL549_06465 PF04972 BON domain AL549_06465 PF13629 Pilus formation protein N terminal region AL549_06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_06485 PF03466 LysR substrate binding domain AL549_06495 PF13476 AAA domain AL549_06500 PF00149 Calcineurin-like phosphoesterase AL549_06500 PF12320 Type 5 capsule protein repressor C-terminal domain AL549_06505 PF12729 Four helix bundle sensory module for signal transduction AL549_06505 PF00672 HAMP domain AL549_06505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_06510 PF01926 50S ribosome-binding GTPase AL549_06515 PF00583 Acetyltransferase (GNAT) family AL549_06525 PF01584 CheW-like domain AL549_06525 PF00072 Response regulator receiver domain AL549_06530 PF00356 Bacterial regulatory proteins, lacI family AL549_06535 PF00294 pfkB family carbohydrate kinase AL549_06540 PF13407 Periplasmic binding protein domain AL549_06545 PF02653 Branched-chain amino acid transport system / permease component AL549_06550 PF00005 ABC transporter AL549_06555 PF05025 RbsD / FucU transport protein family AL549_06570 PF04237 YjbR AL549_06575 PF05762 VWA domain containing CoxE-like protein AL549_06580 PF12592 Protein of unknown function (DUF3763) AL549_06580 PF17868 AAA lid domain AL549_06580 PF07728 AAA domain (dynein-related subfamily) AL549_06590 PF01212 Beta-eliminating lyase AL549_06595 PF00034 Cytochrome c AL549_06600 PF00171 Aldehyde dehydrogenase family AL549_06605 PF03606 C4-dicarboxylate anaerobic carrier AL549_06615 PF01569 PAP2 superfamily AL549_06630 PF00892 EamA-like transporter family AL549_06635 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL549_06635 PF18416 N-acetylglucosamine binding protein domain 2 AL549_06645 PF02743 Cache domain AL549_06645 PF00672 HAMP domain AL549_06645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_06655 PF00149 Calcineurin-like phosphoesterase AL549_06660 PF03222 Tryptophan/tyrosine permease family AL549_06680 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_06680 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_06680 PF03413 Peptidase propeptide and YPEB domain AL549_06680 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_06685 PF13194 Domain of unknown function (DUF4010) AL549_06690 PF00873 AcrB/AcrD/AcrF family AL549_06695 PF13533 Biotin-lipoyl like AL549_06720 PF00581 Rhodanese-like domain AL549_06725 PF00012 Hsp70 protein AL549_06730 PF00465 Iron-containing alcohol dehydrogenase AL549_06740 PF07995 Glucose / Sorbosone dehydrogenase AL549_06745 PF17676 LD-carboxypeptidase C-terminal domain AL549_06745 PF02016 LD-carboxypeptidase N-terminal domain AL549_06760 PF02754 Cysteine-rich domain AL549_06760 PF13183 4Fe-4S dicluster domain AL549_06765 PF00890 FAD binding domain AL549_06770 PF01266 FAD dependent oxidoreductase AL549_06770 PF04324 BFD-like [2Fe-2S] binding domain AL549_06790 PF03618 Kinase/pyrophosphorylase AL549_06795 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_06795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL549_06795 PF00391 PEP-utilising enzyme, mobile domain AL549_06800 PF04224 Protein of unknown function, DUF417 AL549_06805 PF00005 ABC transporter AL549_06805 PF00571 CBS domain AL549_06810 PF00528 Binding-protein-dependent transport system inner membrane component AL549_06815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL549_06820 PF05199 GMC oxidoreductase AL549_06820 PF00732 GMC oxidoreductase AL549_06825 PF00171 Aldehyde dehydrogenase family AL549_06830 PF13977 BetI-type transcriptional repressor, C-terminal AL549_06830 PF00440 Bacterial regulatory proteins, tetR family AL549_06850 PF07943 Penicillin-binding protein 5, C-terminal domain AL549_06850 PF00768 D-alanyl-D-alanine carboxypeptidase AL549_06870 PF03315 Serine dehydratase beta chain AL549_06870 PF03313 Serine dehydratase alpha chain AL549_06875 PF00854 POT family AL549_06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_06885 PF03466 LysR substrate binding domain AL549_06890 PF01266 FAD dependent oxidoreductase AL549_06900 PF07702 UTRA domain AL549_06900 PF00392 Bacterial regulatory proteins, gntR family AL549_06905 PF00528 Binding-protein-dependent transport system inner membrane component AL549_06910 PF00005 ABC transporter AL549_06925 PF00266 Aminotransferase class-V AL549_06935 PF13419 Haloacid dehalogenase-like hydrolase AL549_06940 PF12833 Helix-turn-helix domain AL549_06940 PF01497 Periplasmic binding protein AL549_06945 PF00155 Aminotransferase class I and II AL549_06955 PF00672 HAMP domain AL549_06955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_06970 PF13419 Haloacid dehalogenase-like hydrolase AL549_06975 PF03466 LysR substrate binding domain AL549_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_06990 PF14602 Hexapeptide repeat of succinyl-transferase AL549_06990 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL549_06990 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_06995 PF02566 OsmC-like protein AL549_07000 PF01641 SelR domain AL549_07000 PF01625 Peptide methionine sulfoxide reductase AL549_07005 PF00990 Diguanylate cyclase, GGDEF domain AL549_07020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_07020 PF00672 HAMP domain AL549_07020 PF12729 Four helix bundle sensory module for signal transduction AL549_07025 PF03707 Bacterial signalling protein N terminal repeat AL549_07025 PF00990 Diguanylate cyclase, GGDEF domain AL549_07025 PF00563 EAL domain AL549_07040 PF07670 Nucleoside recognition AL549_07040 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_07040 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_07065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_07065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_07080 PF13419 Haloacid dehalogenase-like hydrolase AL549_07085 PF01551 Peptidase family M23 AL549_07085 PF08525 Opacity-associated protein A N-terminal motif AL549_07085 PF01476 LysM domain AL549_07115 PF00672 HAMP domain AL549_07115 PF02743 Cache domain AL549_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_07120 PF00672 HAMP domain AL549_07120 PF02743 Cache domain AL549_07120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_07125 PF00128 Alpha amylase, catalytic domain AL549_07130 PF00582 Universal stress protein family AL549_07140 PF01584 CheW-like domain AL549_07140 PF00072 Response regulator receiver domain AL549_07150 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_07155 PF06228 Haem utilisation ChuX/HutX AL549_07160 PF04055 Radical SAM superfamily AL549_07165 PF03544 Gram-negative bacterial TonB protein C-terminal AL549_07170 PF01618 MotA/TolQ/ExbB proton channel family AL549_07175 PF02472 Biopolymer transport protein ExbD/TolR AL549_07185 PF01032 FecCD transport family AL549_07190 PF00005 ABC transporter AL549_07215 PF01928 CYTH domain AL549_07220 PF07885 Ion channel AL549_07225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_07225 PF12729 Four helix bundle sensory module for signal transduction AL549_07225 PF00672 HAMP domain AL549_07230 PF08335 GlnD PII-uridylyltransferase AL549_07230 PF03710 Glutamate-ammonia ligase adenylyltransferase AL549_07235 PF00294 pfkB family carbohydrate kinase AL549_07235 PF01467 Cytidylyltransferase-like AL549_07240 PF02321 Outer membrane efflux protein AL549_07245 PF00293 NUDIX domain AL549_07250 PF06853 Protein of unknown function (DUF1249) AL549_07255 PF00149 Calcineurin-like phosphoesterase AL549_07260 PF05728 Uncharacterised protein family (UPF0227) AL549_07265 PF00204 DNA gyrase B AL549_07265 PF00986 DNA gyrase B subunit, carboxyl terminus AL549_07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_07265 PF01751 Toprim domain AL549_07270 PF03989 DNA gyrase C-terminal domain, beta-propeller AL549_07270 PF00521 DNA gyrase/topoisomerase IV, subunit A AL549_07275 PF13180 PDZ domain AL549_07280 PF00595 PDZ domain AL549_07285 PF06295 Protein of unknown function (DUF1043) AL549_07290 PF03969 AFG1-like ATPase AL549_07295 PF00572 Ribosomal protein L13 AL549_07300 PF00380 Ribosomal protein S9/S16 AL549_07305 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL549_07305 PF00355 Rieske [2Fe-2S] domain AL549_07310 PF00033 Cytochrome b/b6/petB AL549_07310 PF00032 Cytochrome b(C-terminal)/b6/petD AL549_07315 PF02167 Cytochrome C1 family AL549_07320 PF02798 Glutathione S-transferase, N-terminal domain AL549_07320 PF00043 Glutathione S-transferase, C-terminal domain AL549_07325 PF04386 Stringent starvation protein B AL549_07330 PF04972 BON domain AL549_07335 PF13580 SIS domain AL549_07340 PF02021 Uncharacterised protein family UPF0102 AL549_07345 PF04348 LppC putative lipoprotein AL549_07350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_07360 PF01795 MraW methylase family AL549_07365 PF04999 Cell division protein FtsL AL549_07370 PF00905 Penicillin binding protein transpeptidase domain AL549_07370 PF03717 Penicillin-binding Protein dimerisation domain AL549_07375 PF08245 Mur ligase middle domain AL549_07375 PF01225 Mur ligase family, catalytic domain AL549_07375 PF02875 Mur ligase family, glutamate ligase domain AL549_07380 PF08245 Mur ligase middle domain AL549_07380 PF02875 Mur ligase family, glutamate ligase domain AL549_07380 PF01225 Mur ligase family, catalytic domain AL549_07385 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL549_07385 PF00953 Glycosyl transferase family 4 AL549_07390 PF02875 Mur ligase family, glutamate ligase domain AL549_07390 PF08245 Mur ligase middle domain AL549_07395 PF01098 Cell cycle protein AL549_07400 PF03033 Glycosyltransferase family 28 N-terminal domain AL549_07400 PF04101 Glycosyltransferase family 28 C-terminal domain AL549_07405 PF01225 Mur ligase family, catalytic domain AL549_07405 PF02875 Mur ligase family, glutamate ligase domain AL549_07405 PF08245 Mur ligase middle domain AL549_07410 PF03799 Cell division protein FtsQ AL549_07410 PF08478 POTRA domain, FtsQ-type AL549_07415 PF02491 SHS2 domain inserted in FTSA AL549_07420 PF00091 Tubulin/FtsZ family, GTPase domain AL549_07420 PF12327 FtsZ family, C-terminal domain AL549_07425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL549_07435 PF01043 SecA preprotein cross-linking domain AL549_07435 PF07517 SecA DEAD-like domain AL549_07435 PF07516 SecA Wing and Scaffold domain AL549_07435 PF02810 SEC-C motif AL549_07440 PF00293 NUDIX domain AL549_07445 PF01113 Dihydrodipicolinate reductase, N-terminus AL549_07445 PF05173 Dihydrodipicolinate reductase, C-terminus AL549_07450 PF00117 Glutamine amidotransferase class-I AL549_07450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL549_07455 PF02142 MGS-like domain AL549_07455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_07455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL549_07470 PF01925 Sulfite exporter TauE/SafE AL549_07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_07475 PF03466 LysR substrate binding domain AL549_07480 PF03458 UPF0126 domain AL549_07485 PF01497 Periplasmic binding protein AL549_07490 PF03186 CobD/Cbib protein AL549_07495 PF01048 Phosphorylase superfamily AL549_07505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL549_07505 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_07510 PF01493 GXGXG motif AL549_07510 PF01645 Conserved region in glutamate synthase AL549_07510 PF04898 Glutamate synthase central domain AL549_07510 PF00310 Glutamine amidotransferases class-II AL549_07515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_07515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL549_07520 PF01493 GXGXG motif AL549_07520 PF00310 Glutamine amidotransferases class-II AL549_07520 PF04898 Glutamate synthase central domain AL549_07520 PF01645 Conserved region in glutamate synthase AL549_07525 PF16199 Radical_SAM C-terminal domain AL549_07525 PF04055 Radical SAM superfamily AL549_07530 PF00990 Diguanylate cyclase, GGDEF domain AL549_07530 PF01590 GAF domain AL549_07530 PF00563 EAL domain AL549_07530 PF00360 Phytochrome region AL549_07535 PF01627 Hpt domain AL549_07535 PF00989 PAS fold AL549_07535 PF00072 Response regulator receiver domain AL549_07535 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL549_07535 PF00512 His Kinase A (phospho-acceptor) domain AL549_07535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_07545 PF00072 Response regulator receiver domain AL549_07545 PF00486 Transcriptional regulatory protein, C terminal AL549_07555 PF03737 Aldolase/RraA AL549_07565 PF00696 Amino acid kinase family AL549_07565 PF01842 ACT domain AL549_07565 PF03447 Homoserine dehydrogenase, NAD binding domain AL549_07565 PF00742 Homoserine dehydrogenase AL549_07565 PF13840 ACT domain AL549_07570 PF00288 GHMP kinases N terminal domain AL549_07570 PF08544 GHMP kinases C terminal AL549_07575 PF00291 Pyridoxal-phosphate dependent enzyme AL549_07575 PF14821 Threonine synthase N terminus AL549_07580 PF01228 Glycine radical AL549_07585 PF01261 Xylose isomerase-like TIM barrel AL549_07590 PF03167 Uracil DNA glycosylase superfamily AL549_07605 PF01235 Sodium:alanine symporter family AL549_07610 PF03883 Peroxide stress protein YaaA AL549_07615 PF00271 Helicase conserved C-terminal domain AL549_07615 PF00270 DEAD/DEAH box helicase AL549_07620 PF05175 Methyltransferase small domain AL549_07625 PF05525 Branched-chain amino acid transport protein AL549_07630 PF00258 Flavodoxin AL549_07635 PF00589 Phage integrase family AL549_07635 PF02899 Phage integrase, N-terminal SAM-like domain AL549_07640 PF13098 Thioredoxin-like domain AL549_07640 PF10411 Disulfide bond isomerase protein N-terminus AL549_07645 PF17768 RecJ OB domain AL549_07645 PF02272 DHHA1 domain AL549_07645 PF01368 DHH family AL549_07655 PF00152 tRNA synthetases class II (D, K and N) AL549_07655 PF01336 OB-fold nucleic acid binding domain AL549_07660 PF02954 Bacterial regulatory protein, Fis family AL549_07660 PF00158 Sigma-54 interaction domain AL549_07660 PF02830 V4R domain AL549_07660 PF06505 Activator of aromatic catabolism AL549_07670 PF00248 Aldo/keto reductase family AL549_07680 PF02976 DNA mismatch repair enzyme MutH AL549_07685 PF00293 NUDIX domain AL549_07690 PF05524 PEP-utilising enzyme, N-terminal AL549_07690 PF01590 GAF domain AL549_07690 PF00391 PEP-utilising enzyme, mobile domain AL549_07690 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_07695 PF01925 Sulfite exporter TauE/SafE AL549_07700 PF01790 Prolipoprotein diacylglyceryl transferase AL549_07705 PF00303 Thymidylate synthase AL549_07715 PF02690 Na+/Pi-cotransporter AL549_07720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_07720 PF03466 LysR substrate binding domain AL549_07725 PF01022 Bacterial regulatory protein, arsR family AL549_07730 PF01649 Ribosomal protein S20 AL549_07735 PF03023 Lipid II flippase MurJ AL549_07740 PF01687 Riboflavin kinase AL549_07740 PF06574 FAD synthetase AL549_07745 PF00133 tRNA synthetases class I (I, L, M and V) AL549_07745 PF08264 Anticodon-binding domain of tRNA AL549_07745 PF06827 Zinc finger found in FPG and IleRS AL549_07750 PF01252 Signal peptidase (SPase) II AL549_07755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_07760 PF02401 LytB protein AL549_07765 PF04397 LytTr DNA-binding domain AL549_07765 PF00072 Response regulator receiver domain AL549_07770 PF07694 5TMR of 5TMR-LYT AL549_07770 PF06580 Histidine kinase AL549_07775 PF02554 Carbon starvation protein CstA AL549_07795 PF03702 Anhydro-N-acetylmuramic acid kinase AL549_07800 PF00933 Glycosyl hydrolase family 3 N terminal domain AL549_07805 PF00793 DAHP synthetase I family AL549_07810 PF01817 Chorismate mutase type II AL549_07810 PF02153 Prephenate dehydrogenase AL549_07815 PF01551 Peptidase family M23 AL549_07815 PF04225 Opacity-associated protein A LysM-like domain AL549_07820 PF07238 PilZ domain AL549_07825 PF12848 ABC transporter AL549_07825 PF00005 ABC transporter AL549_07830 PF01464 Transglycosylase SLT domain AL549_07830 PF14718 Soluble lytic murein transglycosylase L domain AL549_07835 PF01371 Trp repressor protein AL549_07840 PF01931 Protein of unknown function DUF84 AL549_07845 PF01817 Chorismate mutase type II AL549_07845 PF00800 Prephenate dehydratase AL549_07850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL549_07855 PF13525 Outer membrane lipoprotein AL549_07860 PF00849 RNA pseudouridylate synthase AL549_07860 PF01479 S4 domain AL549_07870 PF17871 AAA lid domain AL549_07870 PF02861 Clp amino terminal domain, pathogenicity island component AL549_07870 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_07870 PF00004 ATPase family associated with various cellular activities (AAA) AL549_07870 PF07724 AAA domain (Cdc48 subfamily) AL549_07905 PF03411 Penicillin-insensitive murein endopeptidase AL549_07910 PF00037 4Fe-4S binding domain AL549_07920 PF04381 Putative exonuclease, RdgC AL549_07925 PF00072 Response regulator receiver domain AL549_07925 PF00486 Transcriptional regulatory protein, C terminal AL549_07930 PF11808 Phosphate regulon sensor protein PhoR AL549_07930 PF00989 PAS fold AL549_07930 PF00512 His Kinase A (phospho-acceptor) domain AL549_07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_07935 PF12849 PBP superfamily domain AL549_07940 PF02541 Ppx/GppA phosphatase family AL549_07945 PF02503 Polyphosphate kinase middle domain AL549_07945 PF17941 Polyphosphate kinase C-terminal domain 1 AL549_07945 PF13090 Polyphosphate kinase C-terminal domain 2 AL549_07945 PF13089 Polyphosphate kinase N-terminal domain AL549_07950 PF00528 Binding-protein-dependent transport system inner membrane component AL549_07955 PF00528 Binding-protein-dependent transport system inner membrane component AL549_07960 PF00005 ABC transporter AL549_07965 PF01895 PhoU domain AL549_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_07985 PF03466 LysR substrate binding domain AL549_07990 PF03976 Polyphosphate kinase 2 (PPK2) AL549_07995 PF03932 CutC family AL549_08000 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL549_08000 PF00578 AhpC/TSA family AL549_08005 PF03466 LysR substrate binding domain AL549_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_08010 PF01274 Malate synthase AL549_08015 PF00463 Isocitrate lyase family AL549_08020 PF00571 CBS domain AL549_08030 PF02547 Queuosine biosynthesis protein AL549_08035 PF01702 Queuine tRNA-ribosyltransferase AL549_08040 PF02699 Preprotein translocase subunit AL549_08045 PF13721 SecD export protein N-terminal TM region AL549_08045 PF07549 SecD/SecF GG Motif AL549_08045 PF02355 Protein export membrane protein AL549_08050 PF07549 SecD/SecF GG Motif AL549_08050 PF02355 Protein export membrane protein AL549_08065 PF00459 Inositol monophosphatase family AL549_08070 PF00588 SpoU rRNA Methylase family AL549_08075 PF02082 Transcriptional regulator AL549_08080 PF00266 Aminotransferase class-V AL549_08085 PF01592 NifU-like N terminal domain AL549_08090 PF01521 Iron-sulphur cluster biosynthesis AL549_08095 PF00226 DnaJ domain AL549_08095 PF07743 HSCB C-terminal oligomerisation domain AL549_08100 PF00012 Hsp70 protein AL549_08105 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_08110 PF04384 Iron-sulphur cluster assembly AL549_08115 PF12404 Peptidase AL549_08115 PF00883 Cytosol aminopeptidase family, catalytic domain AL549_08120 PF00334 Nucleoside diphosphate kinase AL549_08125 PF04055 Radical SAM superfamily AL549_08130 PF13464 Domain of unknown function (DUF4115) AL549_08135 PF04551 GcpE protein AL549_08140 PF03129 Anticodon binding domain AL549_08140 PF13393 Histidyl-tRNA synthetase AL549_08145 PF09976 Tetratricopeptide repeat-like domain AL549_08150 PF13360 PQQ-like domain AL549_08155 PF01926 50S ribosome-binding GTPase AL549_08155 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL549_08165 PF13185 GAF domain AL549_08165 PF00990 Diguanylate cyclase, GGDEF domain AL549_08175 PF02601 Exonuclease VII, large subunit AL549_08175 PF13742 OB-fold nucleic acid binding domain AL549_08180 PF00571 CBS domain AL549_08180 PF00478 IMP dehydrogenase / GMP reductase domain AL549_08185 PF02540 NAD synthase AL549_08185 PF00117 Glutamine amidotransferase class-I AL549_08185 PF00958 GMP synthase C terminal domain AL549_08190 PF06483 Chitinase C AL549_08190 PF00704 Glycosyl hydrolases family 18 AL549_08195 PF01184 GPR1/FUN34/yaaH family AL549_08200 PF01235 Sodium:alanine symporter family AL549_08205 PF01266 FAD dependent oxidoreductase AL549_08210 PF03466 LysR substrate binding domain AL549_08210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_08215 PF07885 Ion channel AL549_08220 PF02028 BCCT, betaine/carnitine/choline family transporter AL549_08230 PF03481 Putative GTP-binding controlling metal-binding AL549_08230 PF01300 Telomere recombination AL549_08280 PF01668 SmpB protein AL549_08285 PF03364 Polyketide cyclase / dehydrase and lipid transport AL549_08290 PF03658 RnfH family Ubiquitin AL549_08295 PF04355 SmpA / OmlA family AL549_08300 PF02463 RecF/RecN/SMC N terminal domain AL549_08305 PF01513 ATP-NAD kinase AL549_08310 PF01025 GrpE AL549_08315 PF00375 Sodium:dicarboxylate symporter family AL549_08340 PF00012 Hsp70 protein AL549_08345 PF00226 DnaJ domain AL549_08345 PF01556 DnaJ C terminal domain AL549_08345 PF00684 DnaJ central domain AL549_08350 PF07963 Prokaryotic N-terminal methylation motif AL549_08350 PF00114 Pilin (bacterial filament) AL549_08355 PF07963 Prokaryotic N-terminal methylation motif AL549_08355 PF00114 Pilin (bacterial filament) AL549_08375 PF03806 AbgT putative transporter family AL549_08380 PF00756 Putative esterase AL549_08385 PF08240 Alcohol dehydrogenase GroES-like domain AL549_08385 PF00107 Zinc-binding dehydrogenase AL549_08390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_08390 PF03466 LysR substrate binding domain AL549_08395 PF14437 MafB19-like deaminase AL549_08400 PF01464 Transglycosylase SLT domain AL549_08400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_08410 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL549_08410 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL549_08410 PF02769 AIR synthase related protein, C-terminal domain AL549_08435 PF01546 Peptidase family M20/M25/M40 AL549_08435 PF07687 Peptidase dimerisation domain AL549_08440 PF00860 Permease family AL549_08445 PF00156 Phosphoribosyl transferase domain AL549_08455 PF07417 Sigma factor-binding transcriptional regulator Crl AL549_08460 PF00696 Amino acid kinase family AL549_08460 PF01472 PUA domain AL549_08465 PF00171 Aldehyde dehydrogenase family AL549_08470 PF03477 ATP cone domain AL549_08475 PF01872 RibD C-terminal domain AL549_08475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_08480 PF00677 Lumazine binding domain AL549_08485 PF00925 GTP cyclohydrolase II AL549_08485 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL549_08490 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL549_08495 PF01029 NusB family AL549_08500 PF00586 AIR synthase related protein, N-terminal domain AL549_08500 PF02769 AIR synthase related protein, C-terminal domain AL549_08505 PF04608 Phosphatidylglycerophosphatase A AL549_08510 PF02780 Transketolase, C-terminal domain AL549_08510 PF02779 Transketolase, pyrimidine binding domain AL549_08510 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL549_08515 PF00348 Polyprenyl synthetase AL549_08520 PF02609 Exonuclease VII small subunit AL549_08525 PF01618 MotA/TolQ/ExbB proton channel family AL549_08530 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL549_08530 PF00691 OmpA family AL549_08535 PF02926 THUMP domain AL549_08535 PF02568 Thiamine biosynthesis protein (ThiI) AL549_08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_08540 PF03466 LysR substrate binding domain AL549_08550 PF04241 Protein of unknown function (DUF423) AL549_08555 PF01728 FtsJ-like methyltransferase AL549_08555 PF18125 RlmM ferredoxin-like domain AL549_08560 PF01223 DNA/RNA non-specific endonuclease AL549_08565 PF01367 5'-3' exonuclease, C-terminal SAM fold AL549_08565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL549_08570 PF03641 Possible lysine decarboxylase AL549_08570 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL549_08570 PF11892 Domain of unknown function (DUF3412) AL549_08575 PF00990 Diguanylate cyclase, GGDEF domain AL549_08585 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL549_08585 PF14489 QueF-like protein AL549_08590 PF07348 Syd protein (SUKH-2) AL549_08595 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL549_08600 PF03180 NLPA lipoprotein AL549_08605 PF00528 Binding-protein-dependent transport system inner membrane component AL549_08610 PF09383 NIL domain AL549_08610 PF00005 ABC transporter AL549_08620 PF00356 Bacterial regulatory proteins, lacI family AL549_08625 PF00367 phosphotransferase system, EIIB AL549_08625 PF02378 Phosphotransferase system, EIIC AL549_08630 PF16657 Maltogenic Amylase, C-terminal domain AL549_08630 PF00128 Alpha amylase, catalytic domain AL549_08640 PF00464 Serine hydroxymethyltransferase AL549_08650 PF04055 Radical SAM superfamily AL549_08650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL549_08655 PF03099 Biotin/lipoate A/B protein ligase family AL549_08660 PF04359 Protein of unknown function (DUF493) AL549_08665 PF07943 Penicillin-binding protein 5, C-terminal domain AL549_08665 PF00768 D-alanyl-D-alanine carboxypeptidase AL549_08670 PF03330 Lytic transglycolase AL549_08670 PF05036 Sporulation related domain AL549_08675 PF01098 Cell cycle protein AL549_08680 PF00905 Penicillin binding protein transpeptidase domain AL549_08680 PF03717 Penicillin-binding Protein dimerisation domain AL549_08685 PF02590 Predicted SPOUT methyltransferase AL549_08695 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL549_08695 PF06144 DNA polymerase III, delta subunit AL549_08700 PF04390 Lipopolysaccharide-assembly AL549_08705 PF08264 Anticodon-binding domain of tRNA AL549_08705 PF00133 tRNA synthetases class I (I, L, M and V) AL549_08705 PF13603 Leucyl-tRNA synthetase, Domain 2 AL549_08710 PF07295 Zinc-ribbon containing domain AL549_08715 PF00795 Carbon-nitrogen hydrolase AL549_08720 PF03471 Transporter associated domain AL549_08720 PF00571 CBS domain AL549_08725 PF02130 Uncharacterized protein family UPF0054 AL549_08730 PF02562 PhoH-like protein AL549_08735 PF04055 Radical SAM superfamily AL549_08735 PF01938 TRAM domain AL549_08735 PF00919 Uncharacterized protein family UPF0004 AL549_08740 PF01494 FAD binding domain AL549_08820 PF06071 Protein of unknown function (DUF933) AL549_08820 PF01926 50S ribosome-binding GTPase AL549_08825 PF01195 Peptidyl-tRNA hydrolase AL549_08830 PF14572 Phosphoribosyl synthetase-associated domain AL549_08830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL549_08835 PF00288 GHMP kinases N terminal domain AL549_08835 PF08544 GHMP kinases C terminal AL549_08840 PF03550 Outer membrane lipoprotein LolB AL549_08845 PF01488 Shikimate / quinate 5-dehydrogenase AL549_08845 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL549_08845 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL549_08850 PF00472 RF-1 domain AL549_08850 PF03462 PCRF domain AL549_08855 PF13847 Methyltransferase domain AL549_08855 PF17827 PrmC N-terminal domain AL549_08860 PF04247 Invasion gene expression up-regulator, SirB AL549_08865 PF13369 Transglutaminase-like superfamily AL549_08870 PF00793 DAHP synthetase I family AL549_08875 PF00149 Calcineurin-like phosphoesterase AL549_08875 PF02872 5'-nucleotidase, C-terminal domain AL549_08880 PF04073 Aminoacyl-tRNA editing domain AL549_08885 PF01479 S4 domain AL549_08885 PF00849 RNA pseudouridylate synthase AL549_08890 PF01713 Smr domain AL549_08900 PF01963 TraB family AL549_08905 PF03173 Putative carbohydrate binding domain AL549_08905 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL549_08905 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_08905 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_08915 PF00403 Heavy-metal-associated domain AL549_08920 PF13609 Gram-negative porin AL549_08925 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_08930 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_08960 PF01609 Transposase DDE domain AL549_08960 PF13006 Insertion element 4 transposase N-terminal AL549_08980 PF00072 Response regulator receiver domain AL549_08980 PF01584 CheW-like domain AL549_08985 PF01739 CheR methyltransferase, SAM binding domain AL549_08985 PF03705 CheR methyltransferase, all-alpha domain AL549_08990 PF00460 Flagella basal body rod protein AL549_08995 PF00460 Flagella basal body rod protein AL549_08995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_09000 PF13860 FlgD Ig-like domain AL549_09000 PF03963 Flagellar hook capping protein - N-terminal region AL549_09000 PF13861 FlgD Tudor-like domain AL549_09005 PF07559 Flagellar basal body protein FlaE AL549_09005 PF00460 Flagella basal body rod protein AL549_09005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_09010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_09010 PF00460 Flagella basal body rod protein AL549_09015 PF00460 Flagella basal body rod protein AL549_09015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_09020 PF02107 Flagellar L-ring protein AL549_09025 PF02119 Flagellar P-ring protein AL549_09030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL549_09030 PF10135 Rod binding protein AL549_09035 PF07196 Flagellin hook IN motif AL549_09035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_09040 PF00669 Bacterial flagellin N-terminal helical region AL549_09045 PF07196 Flagellin hook IN motif AL549_09045 PF00700 Bacterial flagellin C-terminal helical region AL549_09045 PF00669 Bacterial flagellin N-terminal helical region AL549_09055 PF07196 Flagellin hook IN motif AL549_09055 PF00669 Bacterial flagellin N-terminal helical region AL549_09055 PF00700 Bacterial flagellin C-terminal helical region AL549_09060 PF00700 Bacterial flagellin C-terminal helical region AL549_09060 PF07196 Flagellin hook IN motif AL549_09060 PF00669 Bacterial flagellin N-terminal helical region AL549_09065 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL549_09070 PF05524 PEP-utilising enzyme, N-terminal AL549_09070 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_09070 PF00391 PEP-utilising enzyme, mobile domain AL549_09075 PF00381 PTS HPr component phosphorylation site AL549_09080 PF00291 Pyridoxal-phosphate dependent enzyme AL549_09090 PF04354 ZipA, C-terminal FtsZ-binding domain AL549_09095 PF12826 Helix-hairpin-helix motif AL549_09095 PF00533 BRCA1 C Terminus (BRCT) domain AL549_09095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL549_09095 PF01653 NAD-dependent DNA ligase adenylation domain AL549_09095 PF03120 NAD-dependent DNA ligase OB-fold domain AL549_09110 PF01145 SPFH domain / Band 7 family AL549_09110 PF16200 C-terminal region of band_7 AL549_09115 PF00085 Thioredoxin AL549_09120 PF00106 short chain dehydrogenase AL549_09125 PF01370 NAD dependent epimerase/dehydratase family AL549_09125 PF08338 Domain of unknown function (DUF1731) AL549_09130 PF07556 Protein of unknown function (DUF1538) AL549_09135 PF07556 Protein of unknown function (DUF1538) AL549_09150 PF12850 Calcineurin-like phosphoesterase superfamily domain AL549_09165 PF17323 Trans-membrane regulatory protein ToxS AL549_09170 PF00486 Transcriptional regulatory protein, C terminal AL549_09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_09175 PF00183 Hsp90 protein AL549_09180 PF05191 Adenylate kinase, active site lid AL549_09185 PF00762 Ferrochelatase AL549_09190 PF17200 Single Cache domain 2 AL549_09190 PF00672 HAMP domain AL549_09190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_09195 PF00854 POT family AL549_09205 PF13537 Glutamine amidotransferase domain AL549_09205 PF00733 Asparagine synthase AL549_09210 PF00999 Sodium/hydrogen exchanger family AL549_09210 PF02254 TrkA-N domain AL549_09215 PF00480 ROK family AL549_09215 PF01047 MarR family AL549_09220 PF01979 Amidohydrolase family AL549_09225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL549_09225 PF00367 phosphotransferase system, EIIB AL549_09225 PF02378 Phosphotransferase system, EIIC AL549_09230 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_09230 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL549_09235 PF01475 Ferric uptake regulator family AL549_09245 PF00258 Flavodoxin AL549_09255 PF12697 Alpha/beta hydrolase family AL549_09260 PF17206 SeqA protein N-terminal domain AL549_09260 PF03925 SeqA protein C-terminal domain AL549_09265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_09265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_09265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_09265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_09270 PF08348 YheO-like PAS domain AL549_09270 PF13309 HTH domain AL549_09275 PF01042 Endoribonuclease L-PSP AL549_09280 PF00375 Sodium:dicarboxylate symporter family AL549_09285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_09285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_09295 PF01784 NIF3 (NGG1p interacting factor 3) AL549_09300 PF00285 Citrate synthase, C-terminal domain AL549_09305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL549_09310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL549_09315 PF02910 Fumarate reductase flavoprotein C-term AL549_09315 PF00890 FAD binding domain AL549_09320 PF13085 2Fe-2S iron-sulfur cluster binding domain AL549_09325 PF16078 2-oxoglutarate dehydrogenase N-terminus AL549_09325 PF16870 2-oxoglutarate dehydrogenase C-terminal AL549_09325 PF02779 Transketolase, pyrimidine binding domain AL549_09325 PF00676 Dehydrogenase E1 component AL549_09330 PF02817 e3 binding domain AL549_09330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_09330 PF00364 Biotin-requiring enzyme AL549_09335 PF08442 ATP-grasp domain AL549_09335 PF00549 CoA-ligase AL549_09340 PF00549 CoA-ligase AL549_09340 PF02629 CoA binding domain AL549_09345 PF00950 ABC 3 transport family AL549_09350 PF00005 ABC transporter AL549_09355 PF01297 Zinc-uptake complex component A periplasmic AL549_09365 PF04023 FeoA domain AL549_09370 PF07670 Nucleoside recognition AL549_09370 PF02421 Ferrous iron transport protein B AL549_09370 PF17910 FeoB cytosolic helical domain AL549_09370 PF07664 Ferrous iron transport protein B C terminus AL549_09385 PF00750 tRNA synthetases class I (R) AL549_09385 PF05746 DALR anticodon binding domain AL549_09385 PF03485 Arginyl tRNA synthetase N terminal domain AL549_09390 PF06185 YecM protein AL549_09395 PF01842 ACT domain AL549_09395 PF00551 Formyl transferase AL549_09405 PF13307 Helicase C-terminal domain AL549_09405 PF04851 Type III restriction enzyme, res subunit AL549_09410 PF00814 Glycoprotease family AL549_09425 PF00561 alpha/beta hydrolase fold AL549_09430 PF13193 AMP-binding enzyme C-terminal domain AL549_09430 PF00501 AMP-binding enzyme AL549_09435 PF00570 HRDC domain AL549_09435 PF01612 3'-5' exonuclease AL549_09440 PF03776 Septum formation topological specificity factor MinE AL549_09445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_09450 PF05209 Septum formation inhibitor MinC, N-terminal domain AL549_09450 PF03775 Septum formation inhibitor MinC, C-terminal domain AL549_09455 PF05166 YcgL domain AL549_09460 PF13406 Transglycosylase SLT domain AL549_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_09465 PF03466 LysR substrate binding domain AL549_09470 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_09470 PF07670 Nucleoside recognition AL549_09470 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_09480 PF00486 Transcriptional regulatory protein, C terminal AL549_09480 PF00072 Response regulator receiver domain AL549_09485 PF18719 ArlS sensor domain AL549_09485 PF00512 His Kinase A (phospho-acceptor) domain AL549_09485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_09495 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_09495 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_09510 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_09510 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_09535 PF00221 Aromatic amino acid lyase AL549_09540 PF00535 Glycosyl transferase family 2 AL549_09550 PF00501 AMP-binding enzyme AL549_09550 PF13193 AMP-binding enzyme C-terminal domain AL549_09560 PF00550 Phosphopantetheine attachment site AL549_09565 PF00550 Phosphopantetheine attachment site AL549_09590 PF04820 Tryptophan halogenase AL549_09605 PF02743 Cache domain AL549_09605 PF00672 HAMP domain AL549_09605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_09610 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL549_09615 PF00486 Transcriptional regulatory protein, C terminal AL549_09615 PF00072 Response regulator receiver domain AL549_09620 PF00512 His Kinase A (phospho-acceptor) domain AL549_09620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_09620 PF00672 HAMP domain AL549_09625 PF01547 Bacterial extracellular solute-binding protein AL549_09635 PF00528 Binding-protein-dependent transport system inner membrane component AL549_09640 PF03459 TOBE domain AL549_09640 PF17912 MalK OB fold domain AL549_09640 PF00005 ABC transporter AL549_09645 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_09650 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_09655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_09665 PF00158 Sigma-54 interaction domain AL549_09665 PF00072 Response regulator receiver domain AL549_09665 PF02954 Bacterial regulatory protein, Fis family AL549_09670 PF02743 Cache domain AL549_09670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_09670 PF00512 His Kinase A (phospho-acceptor) domain AL549_09675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_09675 PF05698 Bacterial trigger factor protein (TF) C-terminus AL549_09675 PF05697 Bacterial trigger factor protein (TF) AL549_09680 PF00574 Clp protease AL549_09685 PF07724 AAA domain (Cdc48 subfamily) AL549_09685 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_09685 PF06689 ClpX C4-type zinc finger AL549_09690 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_09690 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL549_09690 PF00004 ATPase family associated with various cellular activities (AAA) AL549_09695 PF00216 Bacterial DNA-binding protein AL549_09700 PF13145 PPIC-type PPIASE domain AL549_09720 PF01966 HD domain AL549_09720 PF13286 Phosphohydrolase-associated domain AL549_09730 PF00155 Aminotransferase class I and II AL549_09735 PF00425 chorismate binding enzyme AL549_09740 PF16582 Middle domain of thiamine pyrophosphate AL549_09740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_09740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_09745 PF12697 Alpha/beta hydrolase family AL549_09750 PF00378 Enoyl-CoA hydratase/isomerase AL549_09755 PF13378 Enolase C-terminal domain-like AL549_09760 PF13193 AMP-binding enzyme C-terminal domain AL549_09760 PF00501 AMP-binding enzyme AL549_09770 PF03601 Conserved hypothetical protein 698 AL549_09775 PF07690 Major Facilitator Superfamily AL549_09820 PF00529 HlyD membrane-fusion protein of T1SS AL549_09820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_09825 PF00873 AcrB/AcrD/AcrF family AL549_09840 PF00291 Pyridoxal-phosphate dependent enzyme AL549_09845 PF01037 Lrp/AsnC ligand binding domain AL549_09845 PF13404 AsnC-type helix-turn-helix domain AL549_09860 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL549_09865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL549_09875 PF00990 Diguanylate cyclase, GGDEF domain AL549_09875 PF00563 EAL domain AL549_09875 PF13426 PAS domain AL549_09885 PF07969 Amidohydrolase family AL549_09905 PF00672 HAMP domain AL549_09905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_09905 PF02743 Cache domain AL549_09910 PF01263 Aldose 1-epimerase AL549_09915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_09915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_09920 PF01641 SelR domain AL549_09930 PF07023 Protein of unknown function (DUF1315) AL549_09935 PF17763 Glutaminase/Asparaginase C-terminal domain AL549_09935 PF00710 Asparaginase, N-terminal AL549_09940 PF01343 Peptidase family S49 AL549_09945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_09945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL549_09950 PF00881 Nitroreductase family AL549_09955 PF01131 DNA topoisomerase AL549_09955 PF01751 Toprim domain AL549_09960 PF00850 Histone deacetylase domain AL549_09965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_09965 PF00072 Response regulator receiver domain AL549_09965 PF09308 LuxQ, periplasmic AL549_09965 PF00512 His Kinase A (phospho-acceptor) domain AL549_09970 PF00990 Diguanylate cyclase, GGDEF domain AL549_09970 PF00072 Response regulator receiver domain AL549_09975 PF13091 PLD-like domain AL549_09985 PF04074 YhcH/YjgK/YiaL AL549_09990 PF02386 Cation transport protein AL549_09995 PF02254 TrkA-N domain AL549_09995 PF02080 TrkA-C domain AL549_10005 PF11893 Domain of unknown function (DUF3413) AL549_10005 PF00884 Sulfatase AL549_10010 PF07208 Protein of unknown function (DUF1414) AL549_10015 PF04245 37-kD nucleoid-associated bacterial protein AL549_10030 PF03553 Na+/H+ antiporter family AL549_10035 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_10035 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_10045 PF00520 Ion transport protein AL549_10045 PF00027 Cyclic nucleotide-binding domain AL549_10050 PF01914 MarC family integral membrane protein AL549_10055 PF00171 Aldehyde dehydrogenase family AL549_10055 PF00465 Iron-containing alcohol dehydrogenase AL549_10070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL549_10070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL549_10075 PF00462 Glutaredoxin AL549_10085 PF13726 Na+-H+ antiporter family AL549_10085 PF03553 Na+/H+ antiporter family AL549_10090 PF00929 Exonuclease AL549_10095 PF18393 MotY N-terminal domain AL549_10095 PF00691 OmpA family AL549_10100 PF10952 Protein of unknown function (DUF2753) AL549_10105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_10110 PF10576 Iron-sulfur binding domain of endonuclease III AL549_10110 PF00633 Helix-hairpin-helix motif AL549_10110 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_10115 PF02508 Rnf-Nqr subunit, membrane protein AL549_10120 PF04205 FMN-binding domain AL549_10125 PF03116 NQR2, RnfD, RnfE family AL549_10130 PF13375 RnfC Barrel sandwich hybrid domain AL549_10130 PF10531 SLBB domain AL549_10130 PF12838 4Fe-4S dicluster domain AL549_10130 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL549_10135 PF04060 Putative Fe-S cluster AL549_10140 PF02508 Rnf-Nqr subunit, membrane protein AL549_10150 PF04851 Type III restriction enzyme, res subunit AL549_10150 PF17757 UvrB interaction domain AL549_10150 PF02151 UvrB/uvrC motif AL549_10150 PF12344 Ultra-violet resistance protein B AL549_10150 PF00271 Helicase conserved C-terminal domain AL549_10155 PF00158 Sigma-54 interaction domain AL549_10155 PF02954 Bacterial regulatory protein, Fis family AL549_10155 PF00072 Response regulator receiver domain AL549_10160 PF01627 Hpt domain AL549_10165 PF01933 Uncharacterised protein family UPF0052 AL549_10170 PF04055 Radical SAM superfamily AL549_10170 PF06463 Molybdenum Cofactor Synthesis C AL549_10175 PF00994 Probable molybdopterin binding domain AL549_10180 PF01967 MoaC family AL549_10185 PF02597 ThiS family AL549_10190 PF02391 MoaE protein AL549_10195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_10200 PF00528 Binding-protein-dependent transport system inner membrane component AL549_10205 PF00528 Binding-protein-dependent transport system inner membrane component AL549_10205 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_10210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_10210 PF00005 ABC transporter AL549_10215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_10215 PF00005 ABC transporter AL549_10220 PF13409 Glutathione S-transferase, N-terminal domain AL549_10230 PF03795 YCII-related domain AL549_10235 PF03061 Thioesterase superfamily AL549_10240 PF04279 Intracellular septation protein A AL549_10250 PF00375 Sodium:dicarboxylate symporter family AL549_10255 PF00290 Tryptophan synthase alpha chain AL549_10260 PF00291 Pyridoxal-phosphate dependent enzyme AL549_10265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL549_10265 PF00218 Indole-3-glycerol phosphate synthase AL549_10270 PF00591 Glycosyl transferase family, a/b domain AL549_10270 PF02885 Glycosyl transferase family, helical bundle domain AL549_10275 PF00117 Glutamine amidotransferase class-I AL549_10280 PF04715 Anthranilate synthase component I, N terminal region AL549_10280 PF00425 chorismate binding enzyme AL549_10285 PF08056 Tryptophan operon leader peptide AL549_10290 PF02811 PHP domain AL549_10295 PF01300 Telomere recombination AL549_10305 PF01479 S4 domain AL549_10305 PF00849 RNA pseudouridylate synthase AL549_10310 PF04269 Protein of unknown function, DUF440 AL549_10315 PF09285 Elongation factor P, C-terminal AL549_10315 PF08207 Elongation factor P (EF-P) KOW-like domain AL549_10315 PF01132 Elongation factor P (EF-P) OB domain AL549_10325 PF00563 EAL domain AL549_10325 PF00990 Diguanylate cyclase, GGDEF domain AL549_10325 PF08448 PAS fold AL549_10325 PF08447 PAS fold AL549_10330 PF00136 DNA polymerase family B AL549_10330 PF03104 DNA polymerase family B, exonuclease domain AL549_10335 PF00196 Bacterial regulatory proteins, luxR family AL549_10335 PF00072 Response regulator receiver domain AL549_10340 PF01541 GIY-YIG catalytic domain AL549_10340 PF02151 UvrB/uvrC motif AL549_10340 PF08459 UvrC Helix-hairpin-helix N-terminal AL549_10345 PF01066 CDP-alcohol phosphatidyltransferase AL549_10370 PF00202 Aminotransferase class-III AL549_10375 PF16653 Saccharopine dehydrogenase C-terminal domain AL549_10375 PF03435 Saccharopine dehydrogenase NADP binding domain AL549_10395 PF02464 Competence-damaged protein AL549_10395 PF00994 Probable molybdopterin binding domain AL549_10405 PF00268 Ribonucleotide reductase, small chain AL549_10410 PF00317 Ribonucleotide reductase, all-alpha domain AL549_10410 PF03477 ATP cone domain AL549_10410 PF02867 Ribonucleotide reductase, barrel domain AL549_10425 PF00521 DNA gyrase/topoisomerase IV, subunit A AL549_10425 PF03989 DNA gyrase C-terminal domain, beta-propeller AL549_10440 PF02335 Cytochrome c552 AL549_10450 PF13247 4Fe-4S dicluster domain AL549_10455 PF03916 Polysulphide reductase, NrfD AL549_10460 PF01578 Cytochrome C assembly protein AL549_10460 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL549_10465 PF08534 Redoxin AL549_10470 PF03918 Cytochrome C biogenesis protein AL549_10485 PF09334 tRNA synthetases class I (M) AL549_10485 PF01588 Putative tRNA binding domain AL549_10490 PF10609 NUBPL iron-transfer P-loop NTPase AL549_10495 PF00485 Phosphoribulokinase / Uridine kinase family AL549_10510 PF12557 Cob(I)alamin adenosyltransferase N terminal AL549_10510 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL549_10515 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL549_10520 PF00916 Sulfate permease family AL549_10520 PF01740 STAS domain AL549_10525 PF00575 S1 RNA binding domain AL549_10525 PF12111 Polyribonucleotide phosphorylase C terminal AL549_10525 PF10150 Ribonuclease E/G family AL549_10530 PF00849 RNA pseudouridylate synthase AL549_10530 PF01479 S4 domain AL549_10535 PF02545 Maf-like protein AL549_10540 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL549_10545 PF01783 Ribosomal L32p protein family AL549_10550 PF02504 Fatty acid synthesis protein AL549_10555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL549_10555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL549_10560 PF00698 Acyl transferase domain AL549_10570 PF00550 Phosphopantetheine attachment site AL549_10575 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_10575 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_10580 PF01063 Amino-transferase class IV AL549_10585 PF02618 YceG-like family AL549_10590 PF02223 Thymidylate kinase AL549_10595 PF09115 DNA polymerase III, delta subunit, C terminal AL549_10600 PF01026 TatD related DNase AL549_10605 PF00367 phosphotransferase system, EIIB AL549_10605 PF02378 Phosphotransferase system, EIIC AL549_10615 PF00209 Sodium:neurotransmitter symporter family AL549_10625 PF01734 Patatin-like phospholipase AL549_10630 PF02887 Pyruvate kinase, alpha/beta domain AL549_10630 PF00224 Pyruvate kinase, barrel domain AL549_10635 PF00480 ROK family AL549_10640 PF01584 CheW-like domain AL549_10640 PF00072 Response regulator receiver domain AL549_10645 PF02811 PHP domain AL549_10645 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_10645 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_10645 PF14579 Helix-hairpin-helix motif AL549_10645 PF01336 OB-fold nucleic acid binding domain AL549_10660 PF00106 short chain dehydrogenase AL549_10665 PF08496 Peptidase family S49 N-terminal AL549_10665 PF01343 Peptidase family S49 AL549_10670 PF02224 Cytidylate kinase AL549_10675 PF00575 S1 RNA binding domain AL549_10680 PF00216 Bacterial DNA-binding protein AL549_10685 PF06305 Lipopolysaccharide assembly protein A domain AL549_10690 PF18073 Rubredoxin metal binding domain AL549_10695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_10700 PF00528 Binding-protein-dependent transport system inner membrane component AL549_10705 PF00528 Binding-protein-dependent transport system inner membrane component AL549_10705 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_10710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_10715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_10715 PF00005 ABC transporter AL549_10720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_10720 PF00005 ABC transporter AL549_10735 PF13006 Insertion element 4 transposase N-terminal AL549_10735 PF01609 Transposase DDE domain AL549_10760 PF03734 L,D-transpeptidase catalytic domain AL549_10760 PF01471 Putative peptidoglycan binding domain AL549_10765 PF05951 Bacterial protein of unknown function (DUF882) AL549_10770 PF00753 Metallo-beta-lactamase superfamily AL549_10785 PF13006 Insertion element 4 transposase N-terminal AL549_10785 PF01609 Transposase DDE domain AL549_10790 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL549_10800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_10800 PF03466 LysR substrate binding domain AL549_10810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL549_10810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL549_10815 PF01037 Lrp/AsnC ligand binding domain AL549_10820 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL549_10820 PF01580 FtsK/SpoIIIE family AL549_10820 PF09397 Ftsk gamma domain AL549_10820 PF17854 FtsK alpha domain AL549_10825 PF03548 Outer membrane lipoprotein carrier protein LolA AL549_10830 PF00004 ATPase family associated with various cellular activities (AAA) AL549_10830 PF16193 AAA C-terminal domain AL549_10830 PF12002 MgsA AAA+ ATPase C terminal AL549_10835 PF02403 Seryl-tRNA synthetase N-terminal domain AL549_10835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_10840 PF00202 Aminotransferase class-III AL549_10845 PF04055 Radical SAM superfamily AL549_10845 PF06968 Biotin and Thiamin Synthesis associated domain AL549_10850 PF00155 Aminotransferase class I and II AL549_10855 PF08241 Methyltransferase domain AL549_10865 PF01435 Peptidase family M48 AL549_10910 PF00206 Lyase AL549_10910 PF08328 Adenylosuccinate lyase C-terminal AL549_10915 PF04356 Protein of unknown function (DUF489) AL549_10930 PF00294 pfkB family carbohydrate kinase AL549_10935 PF00816 H-NS histone family AL549_10940 PF03553 Na+/H+ antiporter family AL549_10945 PF08029 HisG, C-terminal domain AL549_10945 PF01634 ATP phosphoribosyltransferase AL549_10950 PF00815 Histidinol dehydrogenase AL549_10955 PF00155 Aminotransferase class I and II AL549_10960 PF00475 Imidazoleglycerol-phosphate dehydratase AL549_10960 PF08645 Polynucleotide kinase 3 phosphatase AL549_10965 PF00117 Glutamine amidotransferase class-I AL549_10970 PF00977 Histidine biosynthesis protein AL549_10975 PF00977 Histidine biosynthesis protein AL549_10980 PF01502 Phosphoribosyl-AMP cyclohydrolase AL549_10980 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL549_10985 PF02810 SEC-C motif AL549_10990 PF00563 EAL domain AL549_10990 PF08668 HDOD domain AL549_10995 PF00149 Calcineurin-like phosphoesterase AL549_11000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL549_11005 PF09190 DALR domain AL549_11005 PF01406 tRNA synthetases class I (C) catalytic domain AL549_11010 PF00265 Thymidine kinase AL549_11020 PF01370 NAD dependent epimerase/dehydratase family AL549_11025 PF03466 LysR substrate binding domain AL549_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_11045 PF01226 Formate/nitrite transporter AL549_11050 PF03649 Uncharacterised protein family (UPF0014) AL549_11055 PF06796 Periplasmic nitrate reductase protein NapE AL549_11060 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_11065 PF01568 Molydopterin dinucleotide binding domain AL549_11065 PF00384 Molybdopterin oxidoreductase AL549_11065 PF18364 Molybdopterin oxidoreductase N-terminal domain AL549_11085 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL549_11085 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL549_11095 PF02833 DHHA2 domain AL549_11095 PF01368 DHH family AL549_11110 PF00005 ABC transporter AL549_11115 PF00005 ABC transporter AL549_11115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_11120 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11120 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_11125 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_11135 PF00158 Sigma-54 interaction domain AL549_11135 PF02954 Bacterial regulatory protein, Fis family AL549_11140 PF04012 PspA/IM30 family AL549_11145 PF06667 Phage shock protein B AL549_11150 PF04024 PspC domain AL549_11160 PF13533 Biotin-lipoyl like AL549_11165 PF00873 AcrB/AcrD/AcrF family AL549_11170 PF03352 Methyladenine glycosylase AL549_11175 PF01053 Cys/Met metabolism PLP-dependent enzyme AL549_11180 PF13091 PLD-like domain AL549_11180 PF13396 Phospholipase_D-nuclease N-terminal AL549_11185 PF00209 Sodium:neurotransmitter symporter family AL549_11190 PF00672 HAMP domain AL549_11190 PF12729 Four helix bundle sensory module for signal transduction AL549_11190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_11195 PF00849 RNA pseudouridylate synthase AL549_11205 PF00970 Oxidoreductase FAD-binding domain AL549_11205 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_11205 PF00175 Oxidoreductase NAD-binding domain AL549_11210 PF03063 Prismane/CO dehydrogenase family AL549_11215 PF01590 GAF domain AL549_11215 PF00158 Sigma-54 interaction domain AL549_11220 PF01066 CDP-alcohol phosphatidyltransferase AL549_11225 PF00005 ABC transporter AL549_11230 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11235 PF13416 Bacterial extracellular solute-binding protein AL549_11245 PF06945 Protein of unknown function (DUF1289) AL549_11255 PF00563 EAL domain AL549_11255 PF03707 Bacterial signalling protein N terminal repeat AL549_11255 PF00990 Diguanylate cyclase, GGDEF domain AL549_11270 PF01386 Ribosomal L25p family AL549_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_11275 PF00512 His Kinase A (phospho-acceptor) domain AL549_11275 PF00672 HAMP domain AL549_11280 PF00072 Response regulator receiver domain AL549_11280 PF00486 Transcriptional regulatory protein, C terminal AL549_11290 PF04851 Type III restriction enzyme, res subunit AL549_11290 PF00271 Helicase conserved C-terminal domain AL549_11295 PF00849 RNA pseudouridylate synthase AL549_11295 PF01479 S4 domain AL549_11300 PF07690 Major Facilitator Superfamily AL549_11310 PF00999 Sodium/hydrogen exchanger family AL549_11315 PF13460 NAD(P)H-binding AL549_11315 PF11066 Protein of unknown function (DUF2867) AL549_11320 PF00005 ABC transporter AL549_11335 PF06965 Na+/H+ antiporter 1 AL549_11345 PF09317 Domain of unknown function (DUF1974) AL549_11345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_11345 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_11345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_11350 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_11350 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_11350 PF07055 Enoyl reductase FAD binding domain AL549_11355 PF02080 TrkA-C domain AL549_11355 PF06826 Predicted Permease Membrane Region AL549_11360 PF00462 Glutaredoxin AL549_11365 PF00465 Iron-containing alcohol dehydrogenase AL549_11370 PF01418 Helix-turn-helix domain, rpiR family AL549_11370 PF01380 SIS domain AL549_11375 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_11385 PF03956 Lysine exporter LysO AL549_11395 PF04993 TfoX N-terminal domain AL549_11395 PF04994 TfoX C-terminal domain AL549_11410 PF00512 His Kinase A (phospho-acceptor) domain AL549_11410 PF13188 PAS domain AL549_11410 PF13188 PAS domain AL549_11410 PF13426 PAS domain AL549_11410 PF00989 PAS fold AL549_11410 PF00989 PAS fold AL549_11410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_11410 PF00512 His Kinase A (phospho-acceptor) domain AL549_11410 PF13426 PAS domain AL549_11410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_11420 PF00266 Aminotransferase class-V AL549_11425 PF00005 ABC transporter AL549_11425 PF00664 ABC transporter transmembrane region AL549_11430 PF00664 ABC transporter transmembrane region AL549_11430 PF00005 ABC transporter AL549_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_11445 PF00266 Aminotransferase class-V AL549_11455 PF00990 Diguanylate cyclase, GGDEF domain AL549_11455 PF00072 Response regulator receiver domain AL549_11460 PF00939 Sodium:sulfate symporter transmembrane region AL549_11465 PF02698 DUF218 domain AL549_11470 PF00390 Malic enzyme, N-terminal domain AL549_11470 PF03949 Malic enzyme, NAD binding domain AL549_11475 PF00271 Helicase conserved C-terminal domain AL549_11475 PF04408 Helicase associated domain (HA2) AL549_11475 PF00270 DEAD/DEAH box helicase AL549_11475 PF08482 ATP-dependent helicase C-terminal AL549_11480 PF02253 Phospholipase A1 AL549_11490 PF01259 SAICAR synthetase AL549_11500 PF04172 LrgB-like family AL549_11505 PF03788 LrgA family AL549_11510 PF00929 Exonuclease AL549_11510 PF08411 Exonuclease C-terminal AL549_11525 PF02277 Phosphoribosyltransferase AL549_11530 PF02654 Cobalamin-5-phosphate synthase AL549_11535 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL549_11550 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL549_11555 PF01032 FecCD transport family AL549_11560 PF00005 ABC transporter AL549_11575 PF07690 Major Facilitator Superfamily AL549_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_11580 PF03466 LysR substrate binding domain AL549_11590 PF01863 Protein of unknown function DUF45 AL549_11595 PF05971 RNA methyltransferase AL549_11610 PF04204 Homoserine O-succinyltransferase AL549_11615 PF02872 5'-nucleotidase, C-terminal domain AL549_11615 PF00149 Calcineurin-like phosphoesterase AL549_11620 PF01546 Peptidase family M20/M25/M40 AL549_11620 PF07687 Peptidase dimerisation domain AL549_11625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_11630 PF04209 homogentisate 1,2-dioxygenase AL549_11640 PF02798 Glutathione S-transferase, N-terminal domain AL549_11640 PF14497 Glutathione S-transferase, C-terminal domain AL549_11675 PF00072 Response regulator receiver domain AL549_11675 PF00990 Diguanylate cyclase, GGDEF domain AL549_11680 PF00313 'Cold-shock' DNA-binding domain AL549_11690 PF00141 Peroxidase AL549_11695 PF03009 Glycerophosphoryl diester phosphodiesterase family AL549_11700 PF00455 DeoR C terminal sensor domain AL549_11700 PF08220 DeoR-like helix-turn-helix domain AL549_11705 PF17912 MalK OB fold domain AL549_11705 PF00005 ABC transporter AL549_11710 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11715 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11720 PF13416 Bacterial extracellular solute-binding protein AL549_11725 PF00072 Response regulator receiver domain AL549_11730 PF02743 Cache domain AL549_11730 PF00672 HAMP domain AL549_11730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_11735 PF01925 Sulfite exporter TauE/SafE AL549_11740 PF00072 Response regulator receiver domain AL549_11740 PF00196 Bacterial regulatory proteins, luxR family AL549_11765 PF01970 Tripartite tricarboxylate transporter TctA family AL549_11785 PF12161 HsdM N-terminal domain AL549_11785 PF02384 N-6 DNA Methylase AL549_11790 PF01420 Type I restriction modification DNA specificity domain AL549_11805 PF00285 Citrate synthase, C-terminal domain AL549_11810 PF00330 Aconitase family (aconitate hydratase) AL549_11810 PF00694 Aconitase C-terminal domain AL549_11815 PF04303 PrpF protein AL549_11820 PF13193 AMP-binding enzyme C-terminal domain AL549_11820 PF00501 AMP-binding enzyme AL549_11820 PF16177 Acetyl-coenzyme A synthetase N-terminus AL549_11830 PF00089 Trypsin AL549_11840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_11840 PF00672 HAMP domain AL549_11840 PF02743 Cache domain AL549_11850 PF04055 Radical SAM superfamily AL549_11855 PF06508 Queuosine biosynthesis protein QueC AL549_11860 PF00990 Diguanylate cyclase, GGDEF domain AL549_11860 PF17151 Periplasmic sensor domain AL549_11885 PF10672 S-adenosylmethionine-dependent methyltransferase AL549_11885 PF17785 PUA-like domain AL549_11890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_11890 PF00672 HAMP domain AL549_11890 PF02743 Cache domain AL549_11895 PF00708 Acylphosphatase AL549_11900 PF04358 DsrC like protein AL549_11910 PF01027 Inhibitor of apoptosis-promoting Bax1 AL549_11915 PF00005 ABC transporter AL549_11920 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11925 PF00528 Binding-protein-dependent transport system inner membrane component AL549_11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_11935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_11935 PF10414 Sirohaem synthase dimerisation region AL549_11935 PF14824 Sirohaem biosynthesis protein central AL549_11940 PF12838 4Fe-4S dicluster domain AL549_11940 PF12800 4Fe-4S binding domain AL549_11945 PF12801 4Fe-4S binding domain AL549_11945 PF13237 4Fe-4S dicluster domain AL549_11950 PF01553 Acyltransferase AL549_11955 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL549_11960 PF01810 LysE type translocator AL549_11970 PF01235 Sodium:alanine symporter family AL549_11995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_12010 PF00989 PAS fold AL549_12010 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL549_12010 PF17203 Single cache domain 3 AL549_12015 PF00072 Response regulator receiver domain AL549_12015 PF12431 Transcriptional regulator AL549_12020 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL549_12020 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL549_12025 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL549_12030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_12030 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL549_12060 PF02397 Bacterial sugar transferase AL549_12070 PF13439 Glycosyltransferase Family 4 AL549_12070 PF00534 Glycosyl transferases group 1 AL549_12085 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_12115 PF02954 Bacterial regulatory protein, Fis family AL549_12115 PF00072 Response regulator receiver domain AL549_12115 PF00158 Sigma-54 interaction domain AL549_12120 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_12120 PF00512 His Kinase A (phospho-acceptor) domain AL549_12120 PF01627 Hpt domain AL549_12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_12120 PF00672 HAMP domain AL549_12120 PF00072 Response regulator receiver domain AL549_12135 PF02563 Polysaccharide biosynthesis/export protein AL549_12135 PF10531 SLBB domain AL549_12145 PF01740 STAS domain AL549_12150 PF14743 DNA ligase OB-like domain AL549_12150 PF01068 ATP dependent DNA ligase domain AL549_12155 PF17158 Membrane-associated sensor, integral membrane domain AL549_12155 PF00990 Diguanylate cyclase, GGDEF domain AL549_12160 PF04461 Protein of unknown function (DUF520) AL549_12165 PF00793 DAHP synthetase I family AL549_12180 PF13509 S1 domain AL549_12180 PF17783 CvfB-like winged helix domain AL549_12185 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL549_12185 PF01189 16S rRNA methyltransferase RsmB/F AL549_12185 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL549_12190 PF02470 MlaD protein AL549_12195 PF04403 Paraquat-inducible protein A AL549_12200 PF00664 ABC transporter transmembrane region AL549_12200 PF00005 ABC transporter AL549_12205 PF13185 GAF domain AL549_12210 PF17516 ProQ C-terminal domain AL549_12210 PF04352 ProQ/FINO family AL549_12215 PF11818 C-terminal domain of tail specific protease (DUF3340) AL549_12215 PF00595 PDZ domain AL549_12215 PF03572 Peptidase family S41 AL549_12215 PF17804 Tail specific protease N-terminal domain AL549_12225 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL549_12225 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL549_12225 PF01433 Peptidase family M1 domain AL549_12230 PF05088 Bacterial NAD-glutamate dehydrogenase AL549_12235 PF01180 Dihydroorotate dehydrogenase AL549_12240 PF07126 Cell-division protein ZapC AL549_12245 PF01170 Putative RNA methylase family UPF0020 AL549_12245 PF10672 S-adenosylmethionine-dependent methyltransferase AL549_12245 PF02926 THUMP domain AL549_12265 PF04957 Ribosome modulation factor AL549_12270 PF07977 FabA-like domain AL549_12275 PF13654 AAA domain AL549_12275 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_12280 PF06303 MatP N-terminal domain AL549_12280 PF17414 MatP C-terminal ribbon-helix-helix domain AL549_12300 PF00072 Response regulator receiver domain AL549_12300 PF09308 LuxQ, periplasmic AL549_12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_12300 PF00512 His Kinase A (phospho-acceptor) domain AL549_12315 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL549_12330 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL549_12330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL549_12340 PF00403 Heavy-metal-associated domain AL549_12355 PF00027 Cyclic nucleotide-binding domain AL549_12355 PF13545 Crp-like helix-turn-helix domain AL549_12360 PF00582 Universal stress protein family AL549_12365 PF01171 PP-loop family AL549_12370 PF01609 Transposase DDE domain AL549_12370 PF13006 Insertion element 4 transposase N-terminal AL549_12380 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL549_12390 PF00005 ABC transporter AL549_12390 PF08402 TOBE domain AL549_12395 PF00528 Binding-protein-dependent transport system inner membrane component AL549_12400 PF00528 Binding-protein-dependent transport system inner membrane component AL549_12405 PF13416 Bacterial extracellular solute-binding protein AL549_12410 PF13416 Bacterial extracellular solute-binding protein AL549_12415 PF02146 Sir2 family AL549_12420 PF00909 Ammonium Transporter Family AL549_12455 PF13247 4Fe-4S dicluster domain AL549_12460 PF01568 Molydopterin dinucleotide binding domain AL549_12460 PF00384 Molybdopterin oxidoreductase AL549_12460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_12490 PF02634 FdhD/NarQ family AL549_12495 PF02743 Cache domain AL549_12495 PF00672 HAMP domain AL549_12495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_12500 PF00005 ABC transporter AL549_12500 PF12848 ABC transporter AL549_12515 PF00989 PAS fold AL549_12515 PF00512 His Kinase A (phospho-acceptor) domain AL549_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_12520 PF00072 Response regulator receiver domain AL549_12520 PF02954 Bacterial regulatory protein, Fis family AL549_12520 PF00158 Sigma-54 interaction domain AL549_12525 PF12849 PBP superfamily domain AL549_12530 PF00528 Binding-protein-dependent transport system inner membrane component AL549_12535 PF00005 ABC transporter AL549_12535 PF08402 TOBE domain AL549_12540 PF12804 MobA-like NTP transferase domain AL549_12545 PF03453 MoeA N-terminal region (domain I and II) AL549_12545 PF00994 Probable molybdopterin binding domain AL549_12545 PF03454 MoeA C-terminal region (domain IV) AL549_12555 PF00480 ROK family AL549_12570 PF02743 Cache domain AL549_12570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_12570 PF00672 HAMP domain AL549_12575 PF00877 NlpC/P60 family AL549_12585 PF00990 Diguanylate cyclase, GGDEF domain AL549_12585 PF05230 MASE2 domain AL549_12590 PF01339 CheB methylesterase AL549_12590 PF00072 Response regulator receiver domain AL549_12605 PF00677 Lumazine binding domain AL549_12610 PF01554 MatE AL549_12640 PF13333 Integrase core domain AL549_12640 PF00665 Integrase core domain AL549_12640 PF13276 HTH-like domain AL549_12685 PF13276 HTH-like domain AL549_12685 PF00665 Integrase core domain AL549_12685 PF13333 Integrase core domain AL549_12765 PF14552 Tautomerase enzyme AL549_12805 PF02798 Glutathione S-transferase, N-terminal domain AL549_12805 PF00043 Glutathione S-transferase, C-terminal domain AL549_12860 PF13302 Acetyltransferase (GNAT) domain AL549_12865 PF14552 Tautomerase enzyme AL549_12900 PF02798 Glutathione S-transferase, N-terminal domain AL549_12900 PF00043 Glutathione S-transferase, C-terminal domain AL549_13050 PF09905 DNA-binding protein VF530 AL549_13095 PF13302 Acetyltransferase (GNAT) domain AL549_13240 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL549_13245 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL549_13275 PF13302 Acetyltransferase (GNAT) domain AL549_13320 PF00665 Integrase core domain AL549_13320 PF13276 HTH-like domain AL549_13320 PF13333 Integrase core domain AL549_13385 PF08378 Nuclease-related domain AL549_13430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_13430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_13485 PF06940 Domain of unknown function (DUF1287) AL549_13560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_13655 PF01797 Transposase IS200 like AL549_13705 PF14552 Tautomerase enzyme AL549_13745 PF13302 Acetyltransferase (GNAT) domain AL549_13825 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AL549_13830 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AL549_13840 PF01810 LysE type translocator AL549_13855 PF13495 Phage integrase, N-terminal SAM-like domain AL549_13855 PF00589 Phage integrase family AL549_13860 PF00453 Ribosomal protein L20 AL549_13865 PF01632 Ribosomal protein L35 AL549_13870 PF00707 Translation initiation factor IF-3, C-terminal domain AL549_13870 PF05198 Translation initiation factor IF-3, N-terminal domain AL549_13875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL549_13875 PF03129 Anticodon binding domain AL549_13875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_13875 PF02824 TGS domain AL549_13885 PF07070 SpoOM protein AL549_13890 PF00392 Bacterial regulatory proteins, gntR family AL549_13890 PF07702 UTRA domain AL549_13895 PF01979 Amidohydrolase family AL549_13900 PF00491 Arginase family AL549_13905 PF01175 Urocanase Rossmann-like domain AL549_13905 PF17392 Urocanase C-terminal domain AL549_13905 PF17391 Urocanase N-terminal domain AL549_13910 PF00221 Aromatic amino acid lyase AL549_13920 PF00089 Trypsin AL549_13930 PF13183 4Fe-4S dicluster domain AL549_13930 PF02913 FAD linked oxidases, C-terminal domain AL549_13930 PF01565 FAD binding domain AL549_13945 PF13488 Glycine zipper AL549_13945 PF00691 OmpA family AL549_13960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_13960 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_13965 PF02222 ATP-grasp domain AL549_13970 PF05724 Thiopurine S-methyltransferase (TPMT) AL549_13980 PF00216 Bacterial DNA-binding protein AL549_13995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL549_13995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL549_14000 PF03147 Ferredoxin-fold anticodon binding domain AL549_14000 PF01588 Putative tRNA binding domain AL549_14000 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL549_14000 PF03484 tRNA synthetase B5 domain AL549_14000 PF03483 B3/4 domain AL549_14005 PF01409 tRNA synthetases class II core domain (F) AL549_14005 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL549_14010 PF00072 Response regulator receiver domain AL549_14010 PF00990 Diguanylate cyclase, GGDEF domain AL549_14065 PF13419 Haloacid dehalogenase-like hydrolase AL549_14070 PF17944 Arginine decarboxylase C-terminal helical extension AL549_14070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_14070 PF17810 Arginine decarboxylase helical bundle domain AL549_14075 PF00491 Arginase family AL549_14080 PF12729 Four helix bundle sensory module for signal transduction AL549_14080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_14080 PF00672 HAMP domain AL549_14095 PF07690 Major Facilitator Superfamily AL549_14100 PF07694 5TMR of 5TMR-LYT AL549_14100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_14100 PF06580 Histidine kinase AL549_14105 PF04397 LytTr DNA-binding domain AL549_14105 PF00072 Response regulator receiver domain AL549_14110 PF03280 Proteobacterial lipase chaperone protein AL549_14115 PF00561 alpha/beta hydrolase fold AL549_14140 PF00271 Helicase conserved C-terminal domain AL549_14140 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL549_14140 PF11898 Domain of unknown function (DUF3418) AL549_14140 PF00270 DEAD/DEAH box helicase AL549_14140 PF04408 Helicase associated domain (HA2) AL549_14150 PF02525 Flavodoxin-like fold AL549_14185 PF00437 Type II/IV secretion system protein AL549_14190 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_14200 PF13629 Pilus formation protein N terminal region AL549_14200 PF00263 Bacterial type II and III secretion system protein AL549_14200 PF04972 BON domain AL549_14250 PF17158 Membrane-associated sensor, integral membrane domain AL549_14250 PF00990 Diguanylate cyclase, GGDEF domain AL549_14260 PF00012 Hsp70 protein AL549_14265 PF00012 Hsp70 protein AL549_14280 PF07883 Cupin domain AL549_14280 PF12833 Helix-turn-helix domain AL549_14295 PF00563 EAL domain AL549_14295 PF03707 Bacterial signalling protein N terminal repeat AL549_14295 PF00990 Diguanylate cyclase, GGDEF domain AL549_14320 PF13439 Glycosyltransferase Family 4 AL549_14320 PF00534 Glycosyl transferases group 1 AL549_14325 PF13439 Glycosyltransferase Family 4 AL549_14325 PF00534 Glycosyl transferases group 1 AL549_14345 PF13614 AAA domain AL549_14350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL549_14350 PF10531 SLBB domain AL549_14350 PF02563 Polysaccharide biosynthesis/export protein AL549_14360 PF02397 Bacterial sugar transferase AL549_14365 PF01235 Sodium:alanine symporter family AL549_14370 PF00664 ABC transporter transmembrane region AL549_14370 PF00005 ABC transporter AL549_14375 PF00664 ABC transporter transmembrane region AL549_14375 PF00005 ABC transporter AL549_14390 PF00210 Ferritin-like domain AL549_14395 PF00072 Response regulator receiver domain AL549_14400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_14405 PF03222 Tryptophan/tyrosine permease family AL549_14410 PF00781 Diacylglycerol kinase catalytic domain AL549_14420 PF01734 Patatin-like phospholipase AL549_14425 PF01966 HD domain AL549_14440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_14440 PF03466 LysR substrate binding domain AL549_14445 PF04055 Radical SAM superfamily AL549_14450 PF11230 Protein of unknown function (DUF3029) AL549_14455 PF03707 Bacterial signalling protein N terminal repeat AL549_14455 PF00990 Diguanylate cyclase, GGDEF domain AL549_14455 PF00563 EAL domain AL549_14455 PF13188 PAS domain AL549_14460 PF01966 HD domain AL549_14460 PF11871 Domain of unknown function (DUF3391) AL549_14470 PF00563 EAL domain AL549_14470 PF05231 MASE1 AL549_14475 PF00990 Diguanylate cyclase, GGDEF domain AL549_14475 PF17158 Membrane-associated sensor, integral membrane domain AL549_14485 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_14485 PF00512 His Kinase A (phospho-acceptor) domain AL549_14485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_14490 PF00939 Sodium:sulfate symporter transmembrane region AL549_14505 PF13302 Acetyltransferase (GNAT) domain AL549_14510 PF00158 Sigma-54 interaction domain AL549_14510 PF18024 Helix-turn-helix domain AL549_14510 PF13188 PAS domain AL549_14515 PF05128 Domain of unknown function (DUF697) AL549_14520 PF04317 YcjX-like family, DUF463 AL549_14535 PF04715 Anthranilate synthase component I, N terminal region AL549_14535 PF00425 chorismate binding enzyme AL549_14545 PF00512 His Kinase A (phospho-acceptor) domain AL549_14545 PF00072 Response regulator receiver domain AL549_14545 PF09308 LuxQ, periplasmic AL549_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_14555 PF00293 NUDIX domain AL549_14560 PF03222 Tryptophan/tyrosine permease family AL549_14565 PF03313 Serine dehydratase alpha chain AL549_14565 PF03315 Serine dehydratase beta chain AL549_14570 PF04940 Sensors of blue-light using FAD AL549_14570 PF00563 EAL domain AL549_14580 PF01242 6-pyruvoyl tetrahydropterin synthase AL549_14585 PF00672 HAMP domain AL549_14585 PF17200 Single Cache domain 2 AL549_14585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_14590 PF01336 OB-fold nucleic acid binding domain AL549_14590 PF00152 tRNA synthetases class II (D, K and N) AL549_14600 PF00155 Aminotransferase class I and II AL549_14600 PF00392 Bacterial regulatory proteins, gntR family AL549_14615 PF01966 HD domain AL549_14615 PF00672 HAMP domain AL549_14620 PF00155 Aminotransferase class I and II AL549_14640 PF02743 Cache domain AL549_14640 PF00672 HAMP domain AL549_14640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_14645 PF02028 BCCT, betaine/carnitine/choline family transporter AL549_14650 PF01047 MarR family AL549_14655 PF00196 Bacterial regulatory proteins, luxR family AL549_14655 PF00072 Response regulator receiver domain AL549_14660 PF07730 Histidine kinase AL549_14660 PF17200 Single Cache domain 2 AL549_14665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_14675 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_14680 PF01609 Transposase DDE domain AL549_14680 PF13006 Insertion element 4 transposase N-terminal AL549_14685 PF00925 GTP cyclohydrolase II AL549_14690 PF01609 Transposase DDE domain AL549_14690 PF13006 Insertion element 4 transposase N-terminal AL549_14695 PF00392 Bacterial regulatory proteins, gntR family AL549_14695 PF07840 FadR C-terminal domain AL549_14700 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL549_14705 PF02600 Disulfide bond formation protein DsbB AL549_14710 PF07517 SecA DEAD-like domain AL549_14710 PF02810 SEC-C motif AL549_14710 PF07516 SecA Wing and Scaffold domain AL549_14710 PF01043 SecA preprotein cross-linking domain AL549_14715 PF01207 Dihydrouridine synthase (Dus) AL549_14720 PF00072 Response regulator receiver domain AL549_14720 PF00990 Diguanylate cyclase, GGDEF domain AL549_14725 PF00128 Alpha amylase, catalytic domain AL549_14725 PF02903 Alpha amylase, N-terminal ig-like domain AL549_14730 PF00005 ABC transporter AL549_14735 PF02653 Branched-chain amino acid transport system / permease component AL549_14745 PF04217 Protein of unknown function, DUF412 AL549_14750 PF00871 Acetokinase family AL549_14755 PF01515 Phosphate acetyl/butaryl transferase AL549_14755 PF07085 DRTGG domain AL549_14760 PF01717 Cobalamin-independent synthase, Catalytic domain AL549_14760 PF08267 Cobalamin-independent synthase, N-terminal domain AL549_14765 PF03466 LysR substrate binding domain AL549_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_14780 PF00563 EAL domain AL549_14780 PF03707 Bacterial signalling protein N terminal repeat AL549_14780 PF00990 Diguanylate cyclase, GGDEF domain AL549_14785 PF03707 Bacterial signalling protein N terminal repeat AL549_14785 PF00990 Diguanylate cyclase, GGDEF domain AL549_14785 PF00563 EAL domain AL549_14790 PF11842 Domain of unknown function (DUF3362) AL549_14790 PF04055 Radical SAM superfamily AL549_14790 PF08497 Radical SAM N-terminal AL549_14795 PF00563 EAL domain AL549_14795 PF03707 Bacterial signalling protein N terminal repeat AL549_14795 PF00990 Diguanylate cyclase, GGDEF domain AL549_14805 PF00916 Sulfate permease family AL549_14805 PF01740 STAS domain AL549_14810 PF12833 Helix-turn-helix domain AL549_14810 PF02311 AraC-like ligand binding domain AL549_14825 PF03741 Integral membrane protein TerC family AL549_14830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_14830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_14835 PF02743 Cache domain AL549_14835 PF00672 HAMP domain AL549_14835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_14840 PF13419 Haloacid dehalogenase-like hydrolase AL549_14855 PF04229 GrpB protein AL549_14900 PF06610 L-alanine exporter AL549_14905 PF09308 LuxQ, periplasmic AL549_14905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_14905 PF00072 Response regulator receiver domain AL549_14905 PF00512 His Kinase A (phospho-acceptor) domain AL549_14915 PF03738 Glutathionylspermidine synthase preATP-grasp AL549_14925 PF03994 Domain of Unknown Function (DUF350) AL549_14935 PF02445 Quinolinate synthetase A protein AL549_14940 PF13174 Tetratricopeptide repeat AL549_14940 PF16331 TolA binding protein trimerisation AL549_14945 PF00691 OmpA family AL549_14950 PF04052 TolB amino-terminal domain AL549_14950 PF07676 WD40-like Beta Propeller Repeat AL549_14960 PF02472 Biopolymer transport protein ExbD/TolR AL549_14965 PF01618 MotA/TolQ/ExbB proton channel family AL549_14970 PF03061 Thioesterase superfamily AL549_14980 PF08173 Membrane bound YbgT-like protein AL549_14985 PF02322 Cytochrome bd terminal oxidase subunit II AL549_14990 PF01654 Cytochrome bd terminal oxidase subunit I AL549_14995 PF05491 RuvB C-terminal winged helix domain AL549_14995 PF17864 RuvB AAA lid domain AL549_14995 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL549_15000 PF07499 RuvA, C-terminal domain AL549_15000 PF01330 RuvA N terminal domain AL549_15005 PF00672 HAMP domain AL549_15005 PF02203 Tar ligand binding domain homologue AL549_15005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_15010 PF02075 Crossover junction endodeoxyribonuclease RuvC AL549_15015 PF02938 GAD domain AL549_15015 PF00152 tRNA synthetases class II (D, K and N) AL549_15015 PF01336 OB-fold nucleic acid binding domain AL549_15025 PF13649 Methyltransferase domain AL549_15030 PF08003 Protein of unknown function (DUF1698) AL549_15035 PF08443 RimK-like ATP-grasp domain AL549_15035 PF18030 RimK PreATP-grasp domain AL549_15050 PF05199 GMC oxidoreductase AL549_15050 PF00732 GMC oxidoreductase AL549_15055 PF00171 Aldehyde dehydrogenase family AL549_15060 PF12833 Helix-turn-helix domain AL549_15060 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL549_15065 PF04310 MukB N-terminal AL549_15065 PF16330 MukB hinge domain AL549_15070 PF04288 MukE-like family AL549_15075 PF17192 MukF middle domain AL549_15075 PF17193 MukF C-terminal domain AL549_15075 PF03882 MukF winged-helix domain AL549_15085 PF02698 DUF218 domain AL549_15090 PF00072 Response regulator receiver domain AL549_15090 PF00486 Transcriptional regulatory protein, C terminal AL549_15095 PF02613 Nitrate reductase delta subunit AL549_15100 PF00356 Bacterial regulatory proteins, lacI family AL549_15105 PF04994 TfoX C-terminal domain AL549_15105 PF04993 TfoX N-terminal domain AL549_15120 PF00561 alpha/beta hydrolase fold AL549_15125 PF08323 Starch synthase catalytic domain AL549_15125 PF00534 Glycosyl transferases group 1 AL549_15130 PF00483 Nucleotidyl transferase AL549_15135 PF01131 DNA topoisomerase AL549_15135 PF01751 Toprim domain AL549_15135 PF01396 Topoisomerase DNA binding C4 zinc finger AL549_15135 PF08272 Topoisomerase I zinc-ribbon-like AL549_15140 PF10692 Protein of unknown function (DUF2498) AL549_15145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL549_15155 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL549_15160 PF04376 Arginine-tRNA-protein transferase, N terminus AL549_15160 PF04377 Arginine-tRNA-protein transferase, C terminus AL549_15165 PF01176 Translation initiation factor 1A / IF-1 AL549_15170 PF02861 Clp amino terminal domain, pathogenicity island component AL549_15170 PF17871 AAA lid domain AL549_15170 PF00004 ATPase family associated with various cellular activities (AAA) AL549_15170 PF07724 AAA domain (Cdc48 subfamily) AL549_15170 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_15175 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL549_15180 PF00313 'Cold-shock' DNA-binding domain AL549_15185 PF03971 Monomeric isocitrate dehydrogenase AL549_15190 PF00849 RNA pseudouridylate synthase AL549_15195 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_15200 PF13609 Gram-negative porin AL549_15205 PF06733 DEAD_2 AL549_15205 PF13307 Helicase C-terminal domain AL549_15210 PF01925 Sulfite exporter TauE/SafE AL549_15215 PF07445 Primosomal replication protein priC AL549_15220 PF10689 Protein of unknown function (DUF2496) AL549_15225 PF02743 Cache domain AL549_15225 PF00672 HAMP domain AL549_15225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_15230 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_15240 PF00528 Binding-protein-dependent transport system inner membrane component AL549_15245 PF00528 Binding-protein-dependent transport system inner membrane component AL549_15250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_15255 PF00005 ABC transporter AL549_15270 PF02901 Pyruvate formate lyase-like AL549_15270 PF01228 Glycine radical AL549_15280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_15280 PF00672 HAMP domain AL549_15285 PF04055 Radical SAM superfamily AL549_15295 PF03887 YfbU domain AL549_15300 PF08298 PrkA AAA domain AL549_15300 PF06798 PrkA serine protein kinase C-terminal domain AL549_15305 PF04285 Protein of unknown function (DUF444) AL549_15310 PF04293 SpoVR like protein AL549_15315 PF17155 Gammaproteobacterial periplasmic sensor domain AL549_15315 PF00990 Diguanylate cyclase, GGDEF domain AL549_15320 PF02348 Cytidylyltransferase AL549_15325 PF03966 Trm112p-like protein AL549_15330 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL549_15335 PF00005 ABC transporter AL549_15335 PF00664 ABC transporter transmembrane region AL549_15340 PF00753 Metallo-beta-lactamase superfamily AL549_15340 PF03772 Competence protein AL549_15340 PF13567 Domain of unknown function (DUF4131) AL549_15350 PF12704 MacB-like periplasmic core domain AL549_15350 PF02687 FtsX-like permease family AL549_15355 PF00005 ABC transporter AL549_15360 PF02687 FtsX-like permease family AL549_15360 PF12704 MacB-like periplasmic core domain AL549_15370 PF02559 CarD-like/TRCF domain AL549_15370 PF00270 DEAD/DEAH box helicase AL549_15370 PF00271 Helicase conserved C-terminal domain AL549_15370 PF03461 TRCF domain AL549_15370 PF17757 UvrB interaction domain AL549_15385 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_15390 PF05728 Uncharacterised protein family (UPF0227) AL549_15400 PF13036 Peptidoglycan-synthase activator LpoB AL549_15400 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL549_15415 PF01230 HIT domain AL549_15420 PF00672 HAMP domain AL549_15420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_15430 PF01048 Phosphorylase superfamily AL549_15435 PF00403 Heavy-metal-associated domain AL549_15440 PF00571 CBS domain AL549_15440 PF00392 Bacterial regulatory proteins, gntR family AL549_15440 PF07085 DRTGG domain AL549_15440 PF03061 Thioesterase superfamily AL549_15445 PF00990 Diguanylate cyclase, GGDEF domain AL549_15450 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_15450 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL549_15450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_15455 PF13520 Amino acid permease AL549_15460 PF18500 CadC C-terminal domain 1 AL549_15460 PF00486 Transcriptional regulatory protein, C terminal AL549_15470 PF00672 HAMP domain AL549_15470 PF02743 Cache domain AL549_15470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_15480 PF00990 Diguanylate cyclase, GGDEF domain AL549_15485 PF00571 CBS domain AL549_15485 PF03448 MgtE intracellular N domain AL549_15485 PF01769 Divalent cation transporter AL549_15515 PF13676 TIR domain AL549_15520 PF00589 Phage integrase family AL549_15520 PF02899 Phage integrase, N-terminal SAM-like domain AL549_15565 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL549_15565 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL549_15570 PF13847 Methyltransferase domain AL549_15585 PF00245 Alkaline phosphatase AL549_15595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_15605 PF03692 Putative zinc- or iron-chelating domain AL549_15610 PF03692 Putative zinc- or iron-chelating domain AL549_15615 PF00230 Major intrinsic protein AL549_15620 PF00072 Response regulator receiver domain AL549_15620 PF00486 Transcriptional regulatory protein, C terminal AL549_15625 PF00672 HAMP domain AL549_15625 PF00512 His Kinase A (phospho-acceptor) domain AL549_15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_15640 PF13662 Toprim domain AL549_15640 PF02132 RecR protein AL549_15645 PF02575 YbaB/EbfC DNA-binding family AL549_15650 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL549_15650 PF12169 DNA polymerase III subunits gamma and tau domain III AL549_15650 PF12170 DNA polymerase III tau subunit V interacting with alpha AL549_15655 PF00156 Phosphoribosyl transferase domain AL549_15660 PF00072 Response regulator receiver domain AL549_15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_15665 PF03466 LysR substrate binding domain AL549_15670 PF00156 Phosphoribosyl transferase domain AL549_15675 PF02674 Colicin V production protein AL549_15680 PF05036 Sporulation related domain AL549_15685 PF02875 Mur ligase family, glutamate ligase domain AL549_15685 PF08245 Mur ligase middle domain AL549_15690 PF01039 Carboxyl transferase domain AL549_15690 PF17848 Acetyl-coA carboxylase zinc finger domain AL549_15695 PF01416 tRNA pseudouridine synthase AL549_15705 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_15705 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_15710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_15710 PF11890 Domain of unknown function (DUF3410) AL549_15710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_15715 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_15715 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_15720 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL549_15720 PF01266 FAD dependent oxidoreductase AL549_15725 PF08891 YfcL protein AL549_15730 PF04315 Elongation factor P hydroxylase AL549_15735 PF03458 UPF0126 domain AL549_15740 PF01264 Chorismate synthase AL549_15745 PF05175 Methyltransferase small domain AL549_15750 PF01713 Smr domain AL549_15755 PF00300 Histidine phosphatase superfamily (branch 1) AL549_15760 PF00675 Insulinase (Peptidase family M16) AL549_15760 PF05193 Peptidase M16 inactive domain AL549_15765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL549_15765 PF00378 Enoyl-CoA hydratase/isomerase AL549_15765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL549_15770 PF00108 Thiolase, N-terminal domain AL549_15770 PF02803 Thiolase, C-terminal domain AL549_15775 PF08281 Sigma-70, region 4 AL549_15775 PF04542 Sigma-70 region 2 AL549_15785 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_15790 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_15795 PF04333 MlaA lipoprotein AL549_15800 PF03918 Cytochrome C biogenesis protein AL549_15805 PF03918 Cytochrome C biogenesis protein AL549_15810 PF08534 Redoxin AL549_15815 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL549_15815 PF01578 Cytochrome C assembly protein AL549_15820 PF03100 CcmE AL549_15825 PF04995 Heme exporter protein D (CcmD) AL549_15830 PF01578 Cytochrome C assembly protein AL549_15835 PF03379 CcmB protein AL549_15840 PF00005 ABC transporter AL549_15850 PF01584 CheW-like domain AL549_15860 PF13614 AAA domain AL549_15865 PF00072 Response regulator receiver domain AL549_15865 PF01339 CheB methylesterase AL549_15870 PF07194 P2 response regulator binding domain AL549_15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_15870 PF02895 Signal transducing histidine kinase, homodimeric domain AL549_15870 PF01584 CheW-like domain AL549_15870 PF01627 Hpt domain AL549_15875 PF04344 Chemotaxis phosphatase, CheZ AL549_15880 PF00072 Response regulator receiver domain AL549_15885 PF04542 Sigma-70 region 2 AL549_15885 PF04539 Sigma-70 region 3 AL549_15885 PF04545 Sigma-70, region 4 AL549_15890 PF10609 NUBPL iron-transfer P-loop NTPase AL549_15895 PF00448 SRP54-type protein, GTPase domain AL549_15900 PF00771 FHIPEP family AL549_15905 PF01312 FlhB HrpN YscU SpaS Family AL549_15910 PF01311 Bacterial export proteins, family 1 AL549_15915 PF01313 Bacterial export proteins, family 3 AL549_15920 PF00813 FliP family AL549_15925 PF04347 Flagellar biosynthesis protein, FliO AL549_15930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL549_15935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL549_15935 PF02154 Flagellar motor switch protein FliM AL549_15955 PF18269 T3SS EscN ATPase C-terminal domain AL549_15955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_15965 PF14841 FliG middle domain AL549_15965 PF01706 FliG C-terminal domain AL549_15965 PF14842 FliG N-terminal domain AL549_15970 PF08345 Flagellar M-ring protein C-terminal AL549_15970 PF01514 Secretory protein of YscJ/FliF family AL549_15975 PF02049 Flagellar hook-basal body complex protein FliE AL549_15980 PF00072 Response regulator receiver domain AL549_15980 PF00158 Sigma-54 interaction domain AL549_15980 PF02954 Bacterial regulatory protein, Fis family AL549_15985 PF00512 His Kinase A (phospho-acceptor) domain AL549_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_15990 PF00158 Sigma-54 interaction domain AL549_15990 PF00072 Response regulator receiver domain AL549_15990 PF02954 Bacterial regulatory protein, Fis family AL549_15995 PF02561 Flagellar protein FliS AL549_16005 PF02465 Flagellar hook-associated protein 2 N-terminus AL549_16005 PF07195 Flagellar hook-associated protein 2 C-terminus AL549_16005 PF07196 Flagellin hook IN motif AL549_16010 PF03646 FlaG protein AL549_16015 PF00700 Bacterial flagellin C-terminal helical region AL549_16015 PF07196 Flagellin hook IN motif AL549_16015 PF00669 Bacterial flagellin N-terminal helical region AL549_16020 PF07196 Flagellin hook IN motif AL549_16020 PF00669 Bacterial flagellin N-terminal helical region AL549_16020 PF00700 Bacterial flagellin C-terminal helical region AL549_16025 PF00669 Bacterial flagellin N-terminal helical region AL549_16025 PF00700 Bacterial flagellin C-terminal helical region AL549_16025 PF07196 Flagellin hook IN motif AL549_16030 PF04261 Dyp-type peroxidase family AL549_16055 PF03960 ArsC family AL549_16060 PF01546 Peptidase family M20/M25/M40 AL549_16060 PF07687 Peptidase dimerisation domain AL549_16075 PF01609 Transposase DDE domain AL549_16075 PF13006 Insertion element 4 transposase N-terminal AL549_16085 PF00701 Dihydrodipicolinate synthetase family AL549_16090 PF01842 ACT domain AL549_16095 PF00578 AhpC/TSA family AL549_16100 PF01594 AI-2E family transporter AL549_16110 PF13181 Tetratricopeptide repeat AL549_16110 PF01435 Peptidase family M48 AL549_16115 PF03960 ArsC family AL549_16120 PF03358 NADPH-dependent FMN reductase AL549_16135 PF00860 Permease family AL549_16145 PF00586 AIR synthase related protein, N-terminal domain AL549_16145 PF02769 AIR synthase related protein, C-terminal domain AL549_16150 PF00551 Formyl transferase AL549_16155 PF13230 Glutamine amidotransferases class-II AL549_16160 PF13580 SIS domain AL549_16165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_16165 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_16165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_16165 PF09317 Domain of unknown function (DUF1974) AL549_16185 PF02254 TrkA-N domain AL549_16185 PF00999 Sodium/hydrogen exchanger family AL549_16190 PF02525 Flavodoxin-like fold AL549_16200 PF00929 Exonuclease AL549_16205 PF00075 RNase H AL549_16210 PF08241 Methyltransferase domain AL549_16215 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL549_16215 PF00753 Metallo-beta-lactamase superfamily AL549_16220 PF01476 LysM domain AL549_16220 PF01464 Transglycosylase SLT domain AL549_16230 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_16235 PF00543 Nitrogen regulatory protein P-II AL549_16240 PF00034 Cytochrome c AL549_16245 PF11734 TilS substrate C-terminal domain AL549_16245 PF01171 PP-loop family AL549_16245 PF09179 TilS substrate binding domain AL549_16250 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL549_16255 PF02811 PHP domain AL549_16255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_16255 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_16255 PF01336 OB-fold nucleic acid binding domain AL549_16255 PF14579 Helix-hairpin-helix motif AL549_16260 PF01351 Ribonuclease HII AL549_16265 PF02684 Lipid-A-disaccharide synthetase AL549_16270 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL549_16270 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_16275 PF07977 FabA-like domain AL549_16280 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_16280 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL549_16285 PF03938 Outer membrane protein (OmpH-like) AL549_16290 PF07244 Surface antigen variable number repeat AL549_16290 PF01103 Surface antigen AL549_16300 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL549_16300 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL549_16300 PF13288 DXP reductoisomerase C-terminal domain AL549_16310 PF01255 Putative undecaprenyl diphosphate synthase AL549_16315 PF01765 Ribosome recycling factor AL549_16320 PF00696 Amino acid kinase family AL549_16325 PF00889 Elongation factor TS AL549_16330 PF00318 Ribosomal protein S2 AL549_16335 PF00557 Metallopeptidase family M24 AL549_16340 PF08335 GlnD PII-uridylyltransferase AL549_16340 PF01966 HD domain AL549_16340 PF01909 Nucleotidyltransferase domain AL549_16345 PF11944 Protein of unknown function (DUF3461) AL549_16350 PF00849 RNA pseudouridylate synthase AL549_16355 PF04287 tRNA pseudouridine synthase C AL549_16385 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL549_16395 PF01370 NAD dependent epimerase/dehydratase family AL549_16415 PF03806 AbgT putative transporter family AL549_16420 PF00444 Ribosomal protein L36 AL549_16425 PF01197 Ribosomal protein L31 AL549_16430 PF18389 TrmO C-terminal domain AL549_16430 PF01980 tRNA-methyltransferase O AL549_16435 PF04073 Aminoacyl-tRNA editing domain AL549_16435 PF03129 Anticodon binding domain AL549_16435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_16445 PF06786 Uncharacterised protein family (UPF0253) AL549_16455 PF00209 Sodium:neurotransmitter symporter family AL549_16460 PF00041 Fibronectin type III domain AL549_16460 PF00704 Glycosyl hydrolases family 18 AL549_16470 PF00270 DEAD/DEAH box helicase AL549_16470 PF00271 Helicase conserved C-terminal domain AL549_16470 PF09382 RQC domain AL549_16470 PF00570 HRDC domain AL549_16470 PF16124 RecQ zinc-binding AL549_16475 PF11799 impB/mucB/samB family C-terminal domain AL549_16475 PF00817 impB/mucB/samB family AL549_16480 PF00990 Diguanylate cyclase, GGDEF domain AL549_16480 PF00072 Response regulator receiver domain AL549_16490 PF02424 ApbE family AL549_16495 PF00175 Oxidoreductase NAD-binding domain AL549_16495 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_16495 PF00970 Oxidoreductase FAD-binding domain AL549_16500 PF02508 Rnf-Nqr subunit, membrane protein AL549_16505 PF02508 Rnf-Nqr subunit, membrane protein AL549_16510 PF04205 FMN-binding domain AL549_16515 PF03116 NQR2, RnfD, RnfE family AL549_16520 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL549_16520 PF11973 NQRA C-terminal domain AL549_16525 PF01722 BolA-like protein AL549_16530 PF05175 Methyltransferase small domain AL549_16540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL549_16545 PF07690 Major Facilitator Superfamily AL549_16555 PF04542 Sigma-70 region 2 AL549_16555 PF04545 Sigma-70, region 4 AL549_16565 PF03502 Nucleoside-specific channel-forming protein, Tsx AL549_16570 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL549_16570 PF02558 Ketopantoate reductase PanE/ApbA AL549_16575 PF01965 DJ-1/PfpI family AL549_16580 PF00266 Aminotransferase class-V AL549_16585 PF02657 Fe-S metabolism associated domain AL549_16590 PF00899 ThiF family AL549_16595 PF03562 MltA specific insert domain AL549_16595 PF06725 3D domain AL549_16605 PF00583 Acetyltransferase (GNAT) family AL549_16605 PF00696 Amino acid kinase family AL549_16615 PF13538 UvrD-like helicase C-terminal domain AL549_16620 PF00580 UvrD/REP helicase N-terminal domain AL549_16620 PF12705 PD-(D/E)XK nuclease superfamily AL549_16620 PF13361 UvrD-like helicase C-terminal domain AL549_16625 PF17946 RecC C-terminal domain AL549_16630 PF00884 Sulfatase AL549_16630 PF11893 Domain of unknown function (DUF3413) AL549_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_16640 PF03466 LysR substrate binding domain AL549_16645 PF07130 YebG protein AL549_16650 PF14602 Hexapeptide repeat of succinyl-transferase AL549_16650 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL549_16655 PF00230 Major intrinsic protein AL549_16660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL549_16660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL549_16665 PF00455 DeoR C terminal sensor domain AL549_16665 PF08220 DeoR-like helix-turn-helix domain AL549_16670 PF01266 FAD dependent oxidoreductase AL549_16670 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL549_16675 PF01544 CorA-like Mg2+ transporter protein AL549_16685 PF18030 RimK PreATP-grasp domain AL549_16685 PF08443 RimK-like ATP-grasp domain AL549_16685 PF02080 TrkA-C domain AL549_16705 PF01588 Putative tRNA binding domain AL549_16710 PF00356 Bacterial regulatory proteins, lacI family AL549_16715 PF17200 Single Cache domain 2 AL549_16715 PF00672 HAMP domain AL549_16715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_16720 PF01263 Aldose 1-epimerase AL549_16725 PF00288 GHMP kinases N terminal domain AL549_16725 PF10509 Galactokinase galactose-binding signature AL549_16725 PF08544 GHMP kinases C terminal AL549_16730 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL549_16730 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL549_16735 PF16363 GDP-mannose 4,6 dehydratase AL549_16740 PF00356 Bacterial regulatory proteins, lacI family AL549_16750 PF16353 Domain of unknown function(DUF4981) AL549_16750 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_16750 PF00703 Glycosyl hydrolases family 2 AL549_16750 PF02929 Beta galactosidase small chain AL549_16750 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_16755 PF04074 YhcH/YjgK/YiaL AL549_16760 PF13520 Amino acid permease AL549_16765 PF13520 Amino acid permease AL549_16770 PF01204 Trehalase AL549_16780 PF03466 LysR substrate binding domain AL549_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_16785 PF02417 Chromate transporter AL549_16805 PF00437 Type II/IV secretion system protein AL549_16835 PF13629 Pilus formation protein N terminal region AL549_16835 PF04972 BON domain AL549_16835 PF00263 Bacterial type II and III secretion system protein AL549_16865 PF12833 Helix-turn-helix domain AL549_16865 PF02311 AraC-like ligand binding domain AL549_16870 PF00501 AMP-binding enzyme AL549_16875 PF03466 LysR substrate binding domain AL549_16875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_16880 PF00009 Elongation factor Tu GTP binding domain AL549_16880 PF00679 Elongation factor G C-terminus AL549_16880 PF03764 Elongation factor G, domain IV AL549_16880 PF14492 Elongation Factor G, domain II AL549_16880 PF03144 Elongation factor Tu domain 2 AL549_16895 PF08447 PAS fold AL549_16895 PF08448 PAS fold AL549_16895 PF00563 EAL domain AL549_16895 PF00990 Diguanylate cyclase, GGDEF domain AL549_16895 PF05231 MASE1 AL549_16895 PF13426 PAS domain AL549_16900 PF18073 Rubredoxin metal binding domain AL549_16910 PF18429 Domain of unknown function (DUF5609) AL549_16920 PF01048 Phosphorylase superfamily AL549_16925 PF01676 Metalloenzyme superfamily AL549_16930 PF00591 Glycosyl transferase family, a/b domain AL549_16930 PF02885 Glycosyl transferase family, helical bundle domain AL549_16930 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL549_16935 PF01791 DeoC/LacD family aldolase AL549_16940 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_16940 PF07670 Nucleoside recognition AL549_16940 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_16945 PF01026 TatD related DNase AL549_16950 PF03144 Elongation factor Tu domain 2 AL549_16950 PF00009 Elongation factor Tu GTP binding domain AL549_16950 PF16658 Class II release factor RF3, C-terminal domain AL549_16955 PF08448 PAS fold AL549_16955 PF00990 Diguanylate cyclase, GGDEF domain AL549_16960 PF00990 Diguanylate cyclase, GGDEF domain AL549_16960 PF03707 Bacterial signalling protein N terminal repeat AL549_16960 PF00563 EAL domain AL549_16965 PF00583 Acetyltransferase (GNAT) family AL549_16975 PF13508 Acetyltransferase (GNAT) domain AL549_16985 PF00990 Diguanylate cyclase, GGDEF domain AL549_16985 PF03707 Bacterial signalling protein N terminal repeat AL549_16985 PF00563 EAL domain AL549_17000 PF01554 MatE AL549_17010 PF07719 Tetratricopeptide repeat AL549_17010 PF13181 Tetratricopeptide repeat AL549_17015 PF00575 S1 RNA binding domain AL549_17015 PF01138 3' exoribonuclease family, domain 1 AL549_17015 PF03725 3' exoribonuclease family, domain 2 AL549_17015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL549_17015 PF00013 KH domain AL549_17040 PF00312 Ribosomal protein S15 AL549_17045 PF09157 Pseudouridine synthase II TruB, C-terminal AL549_17045 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL549_17045 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL549_17050 PF02033 Ribosome-binding factor A AL549_17055 PF08364 Bacterial translation initiation factor IF-2 associated region AL549_17055 PF00009 Elongation factor Tu GTP binding domain AL549_17055 PF04760 Translation initiation factor IF-2, N-terminal region AL549_17055 PF11987 Translation-initiation factor 2 AL549_17060 PF13184 NusA-like KH domain AL549_17060 PF00575 S1 RNA binding domain AL549_17060 PF08529 NusA N-terminal domain AL549_17065 PF17384 RimP C-terminal SH3 domain AL549_17065 PF02576 RimP N-terminal domain AL549_17080 PF03840 Preprotein translocase SecG subunit AL549_17085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_17085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_17085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_17085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_17090 PF00809 Pterin binding enzyme AL549_17095 PF06480 FtsH Extracellular AL549_17095 PF01434 Peptidase family M41 AL549_17095 PF17862 AAA+ lid domain AL549_17095 PF00004 ATPase family associated with various cellular activities (AAA) AL549_17100 PF01728 FtsJ-like methyltransferase AL549_17105 PF01985 CRS1 / YhbY (CRM) domain AL549_17110 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_17110 PF03449 Transcription elongation factor, N-terminal AL549_17120 PF13609 Gram-negative porin AL549_17125 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL549_17130 PF04304 Protein of unknown function (DUF454) AL549_17135 PF00579 tRNA synthetases class I (W and Y) AL549_17140 PF01551 Peptidase family M23 AL549_17140 PF04225 Opacity-associated protein A LysM-like domain AL549_17145 PF00873 AcrB/AcrD/AcrF family AL549_17150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_17155 PF01521 Iron-sulphur cluster biosynthesis AL549_17160 PF00202 Aminotransferase class-III AL549_17165 PF01594 AI-2E family transporter AL549_17170 PF05175 Methyltransferase small domain AL549_17170 PF08468 Methyltransferase small domain N-terminal AL549_17175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_17175 PF09308 LuxQ, periplasmic AL549_17175 PF00512 His Kinase A (phospho-acceptor) domain AL549_17175 PF00072 Response regulator receiver domain AL549_17180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_17185 PF00528 Binding-protein-dependent transport system inner membrane component AL549_17190 PF00528 Binding-protein-dependent transport system inner membrane component AL549_17190 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_17195 PF00005 ABC transporter AL549_17195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_17200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_17200 PF00005 ABC transporter AL549_17210 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL549_17215 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_17215 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_17220 PF06165 Glycosyltransferase family 36 AL549_17220 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL549_17225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_17225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_17225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_17230 PF00005 ABC transporter AL549_17230 PF08402 TOBE domain AL549_17240 PF13416 Bacterial extracellular solute-binding protein AL549_17245 PF00909 Ammonium Transporter Family AL549_17250 PF00543 Nitrogen regulatory protein P-II AL549_17255 PF06062 Uncharacterised protein family (UPF0231) AL549_17260 PF05651 Putative sugar diacid recognition AL549_17260 PF13556 PucR C-terminal helix-turn-helix domain AL549_17260 PF17853 GGDEF-like domain AL549_17265 PF02447 GntP family permease AL549_17270 PF02595 Glycerate kinase family AL549_17275 PF00330 Aconitase family (aconitate hydratase) AL549_17275 PF06434 Aconitate hydratase 2 N-terminus AL549_17275 PF11791 Aconitate B N-terminal domain AL549_17280 PF01734 Patatin-like phospholipase AL549_17285 PF00912 Transglycosylase AL549_17285 PF00905 Penicillin binding protein transpeptidase domain AL549_17285 PF14814 Bifunctional transglycosylase second domain AL549_17290 PF08482 ATP-dependent helicase C-terminal AL549_17290 PF04408 Helicase associated domain (HA2) AL549_17290 PF00271 Helicase conserved C-terminal domain AL549_17290 PF00270 DEAD/DEAH box helicase AL549_17295 PF03749 Sugar fermentation stimulation protein RE domain AL549_17295 PF17746 SfsA N-terminal OB domain AL549_17300 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL549_17305 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_17310 PF01743 Poly A polymerase head domain AL549_17310 PF12626 Polymerase A arginine-rich C-terminus AL549_17310 PF12627 Probable RNA and SrmB- binding site of polymerase A AL549_17315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL549_17320 PF02548 Ketopantoate hydroxymethyltransferase AL549_17325 PF02569 Pantoate-beta-alanine ligase AL549_17330 PF01061 ABC-2 type transporter AL549_17335 PF00005 ABC transporter AL549_17340 PF00916 Sulfate permease family AL549_17340 PF01740 STAS domain AL549_17345 PF00484 Carbonic anhydrase AL549_17350 PF00156 Phosphoribosyl transferase domain AL549_17355 PF00440 Bacterial regulatory proteins, tetR family AL549_17360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_17360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_17365 PF02817 e3 binding domain AL549_17365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_17365 PF00364 Biotin-requiring enzyme AL549_17370 PF17831 Pyruvate dehydrogenase E1 component middle domain AL549_17370 PF00456 Transketolase, thiamine diphosphate binding domain AL549_17375 PF07729 FCD domain AL549_17375 PF00392 Bacterial regulatory proteins, gntR family AL549_17380 PF01510 N-acetylmuramoyl-L-alanine amidase AL549_17385 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL549_17385 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL549_17390 PF07963 Prokaryotic N-terminal methylation motif AL549_17390 PF00114 Pilin (bacterial filament) AL549_17395 PF00437 Type II/IV secretion system protein AL549_17395 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL549_17400 PF00482 Type II secretion system (T2SS), protein F AL549_17405 PF06750 Bacterial Peptidase A24 N-terminal domain AL549_17405 PF01478 Type IV leader peptidase family AL549_17410 PF01121 Dephospho-CoA kinase AL549_17415 PF07072 Cell division protein AL549_17420 PF03884 DNA gyrase inhibitor YacG AL549_17425 PF01245 Ribosomal protein L19 AL549_17430 PF01746 tRNA (Guanine-1)-methyltransferase AL549_17435 PF01782 RimM N-terminal domain AL549_17435 PF05239 PRC-barrel domain AL549_17440 PF00886 Ribosomal protein S16 AL549_17445 PF02881 SRP54-type protein, helical bundle domain AL549_17445 PF00448 SRP54-type protein, GTPase domain AL549_17445 PF02978 Signal peptide binding domain AL549_17450 PF01578 Cytochrome C assembly protein AL549_17455 PF00571 CBS domain AL549_17455 PF01595 Cyclin M transmembrane N-terminal domain AL549_17455 PF03471 Transporter associated domain AL549_17460 PF02664 S-Ribosylhomocysteinase (LuxS) AL549_17470 PF04262 Glutamate-cysteine ligase AL549_17475 PF05193 Peptidase M16 inactive domain AL549_17475 PF00675 Insulinase (Peptidase family M16) AL549_17480 PF09335 SNARE associated Golgi protein AL549_17485 PF00107 Zinc-binding dehydrogenase AL549_17485 PF08240 Alcohol dehydrogenase GroES-like domain AL549_17490 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL549_17495 PF00682 HMGL-like AL549_17495 PF02436 Conserved carboxylase domain AL549_17495 PF00364 Biotin-requiring enzyme AL549_17500 PF04277 Oxaloacetate decarboxylase, gamma chain AL549_17545 PF02599 Global regulator protein family AL549_17550 PF01842 ACT domain AL549_17550 PF13840 ACT domain AL549_17550 PF00696 Amino acid kinase family AL549_17555 PF02272 DHHA1 domain AL549_17555 PF01411 tRNA synthetases class II (A) AL549_17555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL549_17560 PF02631 RecX family AL549_17565 PF00154 recA bacterial DNA recombination protein AL549_17570 PF02464 Competence-damaged protein AL549_17575 PF00488 MutS domain V AL549_17575 PF01624 MutS domain I AL549_17575 PF05188 MutS domain II AL549_17575 PF05192 MutS domain III AL549_17575 PF05190 MutS family domain IV AL549_17580 PF00140 Sigma-70 factor, region 1.2 AL549_17580 PF04539 Sigma-70 region 3 AL549_17580 PF04542 Sigma-70 region 2 AL549_17580 PF04545 Sigma-70, region 4 AL549_17585 PF01551 Peptidase family M23 AL549_17585 PF01476 LysM domain AL549_17595 PF01975 Survival protein SurE AL549_17600 PF01142 tRNA pseudouridine synthase D (TruD) AL549_17605 PF02542 YgbB family AL549_17610 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL549_17615 PF04977 Septum formation initiator AL549_17620 PF03952 Enolase, N-terminal domain AL549_17620 PF00113 Enolase, C-terminal TIM barrel domain AL549_17625 PF00117 Glutamine amidotransferase class-I AL549_17625 PF06418 CTP synthase N-terminus AL549_17630 PF03819 MazG nucleotide pyrophosphohydrolase domain AL549_17635 PF13291 ACT domain AL549_17635 PF04607 Region found in RelA / SpoT proteins AL549_17635 PF02824 TGS domain AL549_17640 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_17640 PF01938 TRAM domain AL549_17645 PF00672 HAMP domain AL549_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_17645 PF00512 His Kinase A (phospho-acceptor) domain AL549_17645 PF00072 Response regulator receiver domain AL549_17645 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_17645 PF01627 Hpt domain AL549_17650 PF00990 Diguanylate cyclase, GGDEF domain AL549_17650 PF00563 EAL domain AL549_17650 PF03707 Bacterial signalling protein N terminal repeat AL549_17665 PF01648 4'-phosphopantetheinyl transferase superfamily AL549_17670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL549_17675 PF11967 Recombination protein O N terminal AL549_17675 PF02565 Recombination protein O C terminal AL549_17680 PF07650 KH domain AL549_17680 PF01926 50S ribosome-binding GTPase AL549_17685 PF00035 Double-stranded RNA binding motif AL549_17685 PF14622 Ribonuclease-III-like AL549_17690 PF10502 Signal peptidase, peptidase S26 AL549_17695 PF00679 Elongation factor G C-terminus AL549_17695 PF03144 Elongation factor Tu domain 2 AL549_17695 PF06421 GTP-binding protein LepA C-terminus AL549_17695 PF00009 Elongation factor Tu GTP binding domain AL549_17705 PF17188 MucB/RseB C-terminal domain AL549_17705 PF03888 MucB/RseB N-terminal domain AL549_17710 PF03872 Anti sigma-E protein RseA, N-terminal domain AL549_17710 PF03873 Anti sigma-E protein RseA, C-terminal domain AL549_17715 PF04542 Sigma-70 region 2 AL549_17715 PF08281 Sigma-70, region 4 AL549_17720 PF00890 FAD binding domain AL549_17720 PF02910 Fumarate reductase flavoprotein C-term AL549_17730 PF03937 Flavinator of succinate dehydrogenase AL549_17735 PF01571 Aminomethyltransferase folate-binding domain AL549_17750 PF01494 FAD binding domain AL549_17755 PF01494 FAD binding domain AL549_17760 PF03695 Uncharacterised protein family (UPF0149) AL549_17765 PF05164 Cell division protein ZapA AL549_17775 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL549_17780 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL549_17785 PF01842 ACT domain AL549_17785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_17785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_17795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_17795 PF03466 LysR substrate binding domain AL549_17800 PF01810 LysE type translocator AL549_17805 PF05552 Conserved TM helix AL549_17805 PF00924 Mechanosensitive ion channel AL549_17810 PF01116 Fructose-bisphosphate aldolase class-II AL549_17815 PF00162 Phosphoglycerate kinase AL549_17820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_17820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_17830 PF00456 Transketolase, thiamine diphosphate binding domain AL549_17830 PF02779 Transketolase, pyrimidine binding domain AL549_17830 PF02780 Transketolase, C-terminal domain AL549_17835 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL549_17835 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL549_17835 PF02772 S-adenosylmethionine synthetase, central domain AL549_17845 PF17283 SprT-like zinc ribbon domain AL549_17845 PF10263 SprT-like family AL549_17850 PF04231 Endonuclease I AL549_17860 PF04452 RNA methyltransferase AL549_17865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL549_17865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL549_17870 PF02622 Uncharacterized ACR, COG1678 AL549_17875 PF03652 Holliday junction resolvase AL549_17880 PF00437 Type II/IV secretion system protein AL549_17885 PF00437 Type II/IV secretion system protein AL549_17890 PF01168 Alanine racemase, N-terminal domain AL549_17895 PF03807 NADP oxidoreductase coenzyme F420-dependent AL549_17895 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL549_17900 PF02325 YGGT family AL549_17905 PF02594 Uncharacterised ACR, YggU family COG1872 AL549_17915 PF01725 Ham1 family AL549_17920 PF04055 Radical SAM superfamily AL549_17920 PF06969 HemN C-terminal domain AL549_17930 PF04960 Glutaminase AL549_17935 PF02390 Putative methyltransferase AL549_17940 PF00633 Helix-hairpin-helix motif AL549_17940 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_17940 PF14815 NUDIX domain AL549_17945 PF04362 Bacterial Fe(2+) trafficking AL549_17950 PF01464 Transglycosylase SLT domain AL549_17950 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL549_17970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_17970 PF17200 Single Cache domain 2 AL549_17970 PF00672 HAMP domain AL549_18055 PF00072 Response regulator receiver domain AL549_18065 PF00356 Bacterial regulatory proteins, lacI family AL549_18070 PF04794 YdjC-like protein AL549_18075 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL549_18075 PF02056 Family 4 glycosyl hydrolase AL549_18080 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL549_18085 PF02378 Phosphotransferase system, EIIC AL549_18090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_18095 PF01522 Polysaccharide deacetylase AL549_18110 PF03739 Lipopolysaccharide export system permease LptF/LptG AL549_18115 PF03739 Lipopolysaccharide export system permease LptF/LptG AL549_18120 PF02789 Cytosol aminopeptidase family, N-terminal domain AL549_18120 PF00883 Cytosol aminopeptidase family, catalytic domain AL549_18125 PF04364 DNA polymerase III chi subunit, HolC AL549_18130 PF10458 Valyl tRNA synthetase tRNA binding arm AL549_18130 PF08264 Anticodon-binding domain of tRNA AL549_18130 PF00133 tRNA synthetases class I (I, L, M and V) AL549_18140 PF05987 Bacterial protein of unknown function (DUF898) AL549_18150 PF00583 Acetyltransferase (GNAT) family AL549_18160 PF06877 Regulator of ribonuclease activity B AL549_18170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL549_18170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL549_18175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL549_18175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL549_18180 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL549_18180 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL549_18185 PF01042 Endoribonuclease L-PSP AL549_18190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_18190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_18195 PF00849 RNA pseudouridylate synthase AL549_18200 PF00271 Helicase conserved C-terminal domain AL549_18200 PF12137 RNA polymerase recycling family C-terminal AL549_18200 PF00176 SNF2 family N-terminal domain AL549_18200 PF18339 RapA N-terminal Tudor like domain 1 AL549_18200 PF18337 RapA N-terminal Tudor like domain AL549_18205 PF02562 PhoH-like protein AL549_18205 PF13638 PIN domain AL549_18210 PF01523 Putative modulator of DNA gyrase AL549_18215 PF00795 Carbon-nitrogen hydrolase AL549_18220 PF13502 AsmA-like C-terminal region AL549_18220 PF13116 Protein of unknown function AL549_18225 PF10150 Ribonuclease E/G family AL549_18225 PF00575 S1 RNA binding domain AL549_18230 PF02545 Maf-like protein AL549_18235 PF04093 rod shape-determining protein MreD AL549_18240 PF04085 rod shape-determining protein MreC AL549_18275 PF07963 Prokaryotic N-terminal methylation motif AL549_18275 PF00114 Pilin (bacterial filament) AL549_18280 PF00114 Pilin (bacterial filament) AL549_18280 PF07963 Prokaryotic N-terminal methylation motif AL549_18290 PF00482 Type II secretion system (T2SS), protein F AL549_18295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL549_18295 PF00437 Type II/IV secretion system protein AL549_18305 PF01471 Putative peptidoglycan binding domain AL549_18305 PF13401 AAA domain AL549_18310 PF07660 Secretin and TonB N terminus short domain AL549_18310 PF03958 Bacterial type II/III secretion system short domain AL549_18310 PF00263 Bacterial type II and III secretion system protein AL549_18310 PF11741 AMIN domain AL549_18330 PF00563 EAL domain AL549_18330 PF17157 Gammaproteobacterial periplasmic sensor domain AL549_18330 PF00990 Diguanylate cyclase, GGDEF domain AL549_18335 PF00436 Single-strand binding protein family AL549_18340 PF00196 Bacterial regulatory proteins, luxR family AL549_18345 PF00483 Nucleotidyl transferase AL549_18350 PF17755 UvrA DNA-binding domain AL549_18350 PF17760 UvrA interaction domain AL549_18350 PF00005 ABC transporter AL549_18360 PF00266 Aminotransferase class-V AL549_18365 PF00696 Amino acid kinase family AL549_18365 PF01842 ACT domain AL549_18370 PF00809 Pterin binding enzyme AL549_18370 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL549_18370 PF02607 B12 binding domain AL549_18370 PF02310 B12 binding domain AL549_18370 PF02574 Homocysteine S-methyltransferase AL549_18375 PF00999 Sodium/hydrogen exchanger family AL549_18380 PF00072 Response regulator receiver domain AL549_18380 PF00990 Diguanylate cyclase, GGDEF domain AL549_18445 PF01507 Phosphoadenosine phosphosulfate reductase family AL549_18450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_18450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_18455 PF00667 FAD binding domain AL549_18455 PF00258 Flavodoxin AL549_18455 PF00175 Oxidoreductase NAD-binding domain AL549_18475 PF01207 Dihydrouridine synthase (Dus) AL549_18480 PF01475 Ferric uptake regulator family AL549_18490 PF00342 Phosphoglucose isomerase AL549_18495 PF01894 Uncharacterised protein family UPF0047 AL549_18505 PF01168 Alanine racemase, N-terminal domain AL549_18505 PF00842 Alanine racemase, C-terminal domain AL549_18510 PF03796 DnaB-like helicase C terminal domain AL549_18510 PF00772 DnaB-like helicase N terminal domain AL549_18520 PF01281 Ribosomal protein L9, N-terminal domain AL549_18520 PF03948 Ribosomal protein L9, C-terminal domain AL549_18525 PF01084 Ribosomal protein S18 AL549_18530 PF00436 Single-strand binding protein family AL549_18535 PF01250 Ribosomal protein S6 AL549_18540 PF00834 Ribulose-phosphate 3 epimerase family AL549_18545 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL549_18555 PF01761 3-dehydroquinate synthase AL549_18560 PF01202 Shikimate kinase AL549_18565 PF07660 Secretin and TonB N terminus short domain AL549_18565 PF03958 Bacterial type II/III secretion system short domain AL549_18565 PF00263 Bacterial type II and III secretion system protein AL549_18565 PF11741 AMIN domain AL549_18590 PF00905 Penicillin binding protein transpeptidase domain AL549_18590 PF17092 Penicillin-binding protein OB-like domain AL549_18590 PF00912 Transglycosylase AL549_18595 PF03466 LysR substrate binding domain AL549_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_18605 PF14698 Argininosuccinate lyase C-terminal AL549_18605 PF00206 Lyase AL549_18605 PF00583 Acetyltransferase (GNAT) family AL549_18610 PF00764 Arginosuccinate synthase AL549_18615 PF00696 Amino acid kinase family AL549_18620 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_18620 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_18625 PF07687 Peptidase dimerisation domain AL549_18625 PF01546 Peptidase family M20/M25/M40 AL549_18630 PF00311 Phosphoenolpyruvate carboxylase AL549_18640 PF02219 Methylenetetrahydrofolate reductase AL549_18645 PF00742 Homoserine dehydrogenase AL549_18645 PF00696 Amino acid kinase family AL549_18645 PF03447 Homoserine dehydrogenase, NAD binding domain AL549_18650 PF01053 Cys/Met metabolism PLP-dependent enzyme AL549_18655 PF01340 Met Apo-repressor, MetJ AL549_18660 PF03949 Malic enzyme, NAD binding domain AL549_18660 PF00390 Malic enzyme, N-terminal domain AL549_18665 PF01197 Ribosomal protein L31 AL549_18670 PF00270 DEAD/DEAH box helicase AL549_18670 PF00271 Helicase conserved C-terminal domain AL549_18670 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL549_18670 PF18074 Primosomal protein N C-terminal domain AL549_18670 PF17764 3′ DNA-binding domain (3′BD) AL549_18675 PF00356 Bacterial regulatory proteins, lacI family AL549_18685 PF00227 Proteasome subunit AL549_18690 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_18690 PF00004 ATPase family associated with various cellular activities (AAA) AL549_18690 PF07724 AAA domain (Cdc48 subfamily) AL549_18695 PF01040 UbiA prenyltransferase family AL549_18700 PF03737 Aldolase/RraA AL549_18705 PF06005 Cell division protein ZapB AL549_18710 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL549_18735 PF00121 Triosephosphate isomerase AL549_18740 PF16363 GDP-mannose 4,6 dehydratase AL549_18745 PF00210 Ferritin-like domain AL549_18750 PF04324 BFD-like [2Fe-2S] binding domain AL549_18755 PF03143 Elongation factor Tu C-terminal domain AL549_18755 PF03144 Elongation factor Tu domain 2 AL549_18755 PF00009 Elongation factor Tu GTP binding domain AL549_18760 PF14492 Elongation Factor G, domain II AL549_18760 PF03764 Elongation factor G, domain IV AL549_18760 PF00009 Elongation factor Tu GTP binding domain AL549_18760 PF03144 Elongation factor Tu domain 2 AL549_18760 PF00679 Elongation factor G C-terminus AL549_18765 PF00177 Ribosomal protein S7p/S5e AL549_18770 PF00164 Ribosomal protein S12/S23 AL549_18775 PF04077 DsrH like protein AL549_18780 PF02635 DsrE/DsrF-like family AL549_18785 PF02635 DsrE/DsrF-like family AL549_18790 PF13309 HTH domain AL549_18790 PF08348 YheO-like PAS domain AL549_18795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_18795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_18805 PF04102 SlyX AL549_18810 PF01112 Asparaginase AL549_18815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_18830 PF02525 Flavodoxin-like fold AL549_18835 PF12848 ABC transporter AL549_18835 PF00005 ABC transporter AL549_18845 PF00561 alpha/beta hydrolase fold AL549_18850 PF06794 Uncharacterised protein family (UPF0270) AL549_18855 PF00485 Phosphoribulokinase / Uridine kinase family AL549_18860 PF00027 Cyclic nucleotide-binding domain AL549_18860 PF13545 Crp-like helix-turn-helix domain AL549_18870 PF00171 Aldehyde dehydrogenase family AL549_18875 PF04958 Arginine N-succinyltransferase beta subunit AL549_18880 PF00202 Aminotransferase class-III AL549_18885 PF00117 Glutamine amidotransferase class-I AL549_18900 PF00579 tRNA synthetases class I (W and Y) AL549_18905 PF13419 Haloacid dehalogenase-like hydrolase AL549_18910 PF00588 SpoU rRNA Methylase family AL549_18910 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL549_18915 PF08461 Ribonuclease R winged-helix domain AL549_18915 PF00575 S1 RNA binding domain AL549_18915 PF08206 Ribonuclease B OB domain AL549_18915 PF17876 Cold shock domain AL549_18915 PF00773 RNB domain AL549_18920 PF01979 Amidohydrolase family AL549_18925 PF02082 Transcriptional regulator AL549_18930 PF00042 Globin AL549_18930 PF00175 Oxidoreductase NAD-binding domain AL549_18930 PF00970 Oxidoreductase FAD-binding domain AL549_18935 PF08238 Sel1 repeat AL549_18940 PF00709 Adenylosuccinate synthetase AL549_18945 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL549_18950 PF01145 SPFH domain / Band 7 family AL549_18955 PF12221 Bacterial membrane protein N terminal AL549_18955 PF01145 SPFH domain / Band 7 family AL549_18960 PF01926 50S ribosome-binding GTPase AL549_18960 PF13167 GTP-binding GTPase N-terminal AL549_18960 PF16360 GTP-binding GTPase Middle Region AL549_18965 PF17209 Hfq protein AL549_18975 PF08676 MutL C terminal dimerisation domain AL549_18975 PF01119 DNA mismatch repair protein, C-terminal domain AL549_18980 PF01520 N-acetylmuramoyl-L-alanine amidase AL549_18985 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL549_18990 PF08331 Domain of unknown function (DUF1730) AL549_19050 PF00929 Exonuclease AL549_19055 PF03193 RsgA GTPase AL549_19060 PF02666 Phosphatidylserine decarboxylase AL549_19065 PF00939 Sodium:sulfate symporter transmembrane region AL549_19075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL549_19075 PF01676 Metalloenzyme superfamily AL549_19080 PF00581 Rhodanese-like domain AL549_19085 PF02556 Preprotein translocase subunit SecB AL549_19090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL549_19090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL549_19095 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_19095 PF06426 Serine acetyltransferase, N-terminal AL549_19100 PF01551 Peptidase family M23 AL549_19110 PF00440 Bacterial regulatory proteins, tetR family AL549_19110 PF08360 QacR-like protein, C-terminal region AL549_19120 PF00152 tRNA synthetases class II (D, K and N) AL549_19125 PF00890 FAD binding domain AL549_19125 PF02910 Fumarate reductase flavoprotein C-term AL549_19130 PF13085 2Fe-2S iron-sulfur cluster binding domain AL549_19130 PF13183 4Fe-4S dicluster domain AL549_19135 PF02300 Fumarate reductase subunit C AL549_19140 PF02313 Fumarate reductase subunit D AL549_19150 PF08207 Elongation factor P (EF-P) KOW-like domain AL549_19150 PF01132 Elongation factor P (EF-P) OB domain AL549_19150 PF09285 Elongation factor P, C-terminal AL549_19155 PF04055 Radical SAM superfamily AL549_19160 PF02308 MgtC family AL549_19170 PF00118 TCP-1/cpn60 chaperonin family AL549_19175 PF00166 Chaperonin 10 Kd subunit AL549_19180 PF01554 MatE AL549_19185 PF00365 Phosphofructokinase AL549_19190 PF16916 Dimerisation domain of Zinc Transporter AL549_19190 PF01545 Cation efflux family AL549_19195 PF07813 LTXXQ motif family protein AL549_19200 PF00486 Transcriptional regulatory protein, C terminal AL549_19200 PF00072 Response regulator receiver domain AL549_19205 PF16527 Two-component sensor protein CpxA, periplasmic domain AL549_19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_19205 PF00672 HAMP domain AL549_19205 PF00512 His Kinase A (phospho-acceptor) domain AL549_19210 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL549_19210 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL549_19215 PF00588 SpoU rRNA Methylase family AL549_19220 PF04186 FxsA cytoplasmic membrane protein AL549_19225 PF00206 Lyase AL549_19225 PF10415 Fumarase C C-terminus AL549_19230 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL549_19235 PF11412 Disulphide bond corrector protein DsbC AL549_19235 PF02683 Cytochrome C biogenesis protein transmembrane region AL549_19245 PF01914 MarC family integral membrane protein AL549_19255 PF00474 Sodium:solute symporter family AL549_19270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_19270 PF00512 His Kinase A (phospho-acceptor) domain AL549_19270 PF01627 Hpt domain AL549_19270 PF00072 Response regulator receiver domain AL549_19270 PF00672 HAMP domain AL549_19275 PF12832 MFS_1 like family AL549_19290 PF16177 Acetyl-coenzyme A synthetase N-terminus AL549_19290 PF13193 AMP-binding enzyme C-terminal domain AL549_19290 PF00501 AMP-binding enzyme AL549_19295 PF01220 Dehydroquinase class II AL549_19300 PF00364 Biotin-requiring enzyme AL549_19305 PF00289 Biotin carboxylase, N-terminal domain AL549_19305 PF02785 Biotin carboxylase C-terminal domain AL549_19305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL549_19315 PF01207 Dihydrouridine synthase (Dus) AL549_19320 PF02954 Bacterial regulatory protein, Fis family AL549_19325 PF17200 Single Cache domain 2 AL549_19325 PF00672 HAMP domain AL549_19325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_19330 PF13411 MerR HTH family regulatory protein AL549_19335 PF01808 AICARFT/IMPCHase bienzyme AL549_19335 PF02142 MGS-like domain AL549_19340 PF02844 Phosphoribosylglycinamide synthetase, N domain AL549_19340 PF02843 Phosphoribosylglycinamide synthetase, C domain AL549_19340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL549_19350 PF00216 Bacterial DNA-binding protein AL549_19355 PF01595 Cyclin M transmembrane N-terminal domain AL549_19355 PF00571 CBS domain AL549_19360 PF04222 Protein of unknown function (DUF416) AL549_19365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_19365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_19370 PF03167 Uracil DNA glycosylase superfamily AL549_19375 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL549_19390 PF09297 NADH pyrophosphatase zinc ribbon domain AL549_19390 PF00293 NUDIX domain AL549_19395 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL549_19400 PF05000 RNA polymerase Rpb1, domain 4 AL549_19400 PF04983 RNA polymerase Rpb1, domain 3 AL549_19400 PF00623 RNA polymerase Rpb1, domain 2 AL549_19400 PF04997 RNA polymerase Rpb1, domain 1 AL549_19400 PF04998 RNA polymerase Rpb1, domain 5 AL549_19405 PF04565 RNA polymerase Rpb2, domain 3 AL549_19405 PF04561 RNA polymerase Rpb2, domain 2 AL549_19405 PF00562 RNA polymerase Rpb2, domain 6 AL549_19405 PF04560 RNA polymerase Rpb2, domain 7 AL549_19405 PF10385 RNA polymerase beta subunit external 1 domain AL549_19405 PF04563 RNA polymerase beta subunit AL549_19410 PF16320 Ribosomal protein L7/L12 dimerisation domain AL549_19410 PF00542 Ribosomal protein L7/L12 C-terminal domain AL549_19415 PF00466 Ribosomal protein L10 AL549_19420 PF00687 Ribosomal protein L1p/L10e family AL549_19425 PF03946 Ribosomal protein L11, N-terminal domain AL549_19425 PF00298 Ribosomal protein L11, RNA binding domain AL549_19430 PF02357 Transcription termination factor nusG AL549_19430 PF00467 KOW motif AL549_19435 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL549_19440 PF00009 Elongation factor Tu GTP binding domain AL549_19440 PF03144 Elongation factor Tu domain 2 AL549_19440 PF03143 Elongation factor Tu C-terminal domain AL549_19465 PF00485 Phosphoribulokinase / Uridine kinase family AL549_19470 PF08279 HTH domain AL549_19470 PF03099 Biotin/lipoate A/B protein ligase family AL549_19470 PF02237 Biotin protein ligase C terminal domain AL549_19475 PF01565 FAD binding domain AL549_19475 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL549_19485 PF13091 PLD-like domain AL549_19550 PF01177 Asp/Glu/Hydantoin racemase AL549_19560 PF00593 TonB dependent receptor AL549_19560 PF07715 TonB-dependent Receptor Plug Domain AL549_19565 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_19575 PF00440 Bacterial regulatory proteins, tetR family AL549_19580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_19580 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_19590 PF00717 Peptidase S24-like AL549_19590 PF01726 LexA DNA binding domain AL549_19595 PF01553 Acyltransferase AL549_19600 PF01040 UbiA prenyltransferase family AL549_19605 PF04345 Chorismate lyase AL549_19610 PF03748 Flagellar basal body-associated protein FliL AL549_19615 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL549_19615 PF01694 Rhomboid family AL549_19620 PF00581 Rhodanese-like domain AL549_19625 PF04545 Sigma-70, region 4 AL549_19625 PF04542 Sigma-70 region 2 AL549_19625 PF00140 Sigma-70 factor, region 1.2 AL549_19630 PF18075 FtsX extracellular domain AL549_19635 PF00005 ABC transporter AL549_19640 PF02881 SRP54-type protein, helical bundle domain AL549_19640 PF00448 SRP54-type protein, GTPase domain AL549_19655 PF01914 MarC family integral membrane protein AL549_19695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_19695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_19700 PF01022 Bacterial regulatory protein, arsR family AL549_19705 PF08668 HDOD domain AL549_19705 PF00563 EAL domain AL549_19710 PF01810 LysE type translocator AL549_19715 PF12146 Serine aminopeptidase, S33 AL549_19740 PF00990 Diguanylate cyclase, GGDEF domain AL549_19740 PF10442 FIST C domain AL549_19740 PF08495 FIST N domain AL549_19740 PF00563 EAL domain AL549_19745 PF13419 Haloacid dehalogenase-like hydrolase AL549_19750 PF00589 Phage integrase family AL549_19750 PF02899 Phage integrase, N-terminal SAM-like domain AL549_19760 PF01678 Diaminopimelate epimerase AL549_19765 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_19765 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL549_19775 PF01491 Frataxin-like domain AL549_19780 PF12633 Adenylate cyclase NT domain AL549_19780 PF01295 Adenylate cyclase, class-I AL549_19785 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL549_19785 PF03900 Porphobilinogen deaminase, C-terminal domain AL549_19790 PF02602 Uroporphyrinogen-III synthase HemD AL549_19795 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL549_19810 PF10625 Universal stress protein B (UspB) AL549_19815 PF00210 Ferritin-like domain AL549_19820 PF00582 Universal stress protein family AL549_19825 PF00892 EamA-like transporter family AL549_19835 PF04445 Putative SAM-dependent methyltransferase AL549_19840 PF00563 EAL domain AL549_19840 PF08448 PAS fold AL549_19840 PF00990 Diguanylate cyclase, GGDEF domain AL549_19845 PF01037 Lrp/AsnC ligand binding domain AL549_19850 PF01432 Peptidase family M3 AL549_19855 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL549_19860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_19860 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_19880 PF01081 KDPG and KHG aldolase AL549_19885 PF02447 GntP family permease AL549_19890 PF01202 Shikimate kinase AL549_19895 PF00920 Dehydratase family AL549_19900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_19900 PF00356 Bacterial regulatory proteins, lacI family AL549_19915 PF00069 Protein kinase domain AL549_19915 PF03793 PASTA domain AL549_19950 PF00528 Binding-protein-dependent transport system inner membrane component AL549_19950 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_19960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_19965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_19965 PF00005 ABC transporter AL549_19995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL549_20000 PF00580 UvrD/REP helicase N-terminal domain AL549_20000 PF13361 UvrD-like helicase C-terminal domain AL549_20005 PF00440 Bacterial regulatory proteins, tetR family AL549_20010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_20015 PF00873 AcrB/AcrD/AcrF family AL549_20020 PF04380 Membrane fusogenic activity AL549_20025 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL549_20025 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL549_20030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_20030 PF03466 LysR substrate binding domain AL549_20075 PF12724 Flavodoxin domain AL549_20080 PF02386 Cation transport protein AL549_20085 PF01205 Uncharacterized protein family UPF0029 AL549_20085 PF09186 Domain of unknown function (DUF1949) AL549_20090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL549_20090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL549_20090 PF00378 Enoyl-CoA hydratase/isomerase AL549_20095 PF02803 Thiolase, C-terminal domain AL549_20095 PF00108 Thiolase, N-terminal domain AL549_20100 PF08240 Alcohol dehydrogenase GroES-like domain AL549_20100 PF00107 Zinc-binding dehydrogenase AL549_20105 PF03466 LysR substrate binding domain AL549_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_20115 PF01206 Sulfurtransferase TusA AL549_20125 PF01169 Uncharacterized protein family UPF0016 AL549_20130 PF02091 Glycyl-tRNA synthetase alpha subunit AL549_20135 PF02092 Glycyl-tRNA synthetase beta subunit AL549_20135 PF05746 DALR anticodon binding domain AL549_20145 PF00155 Aminotransferase class I and II AL549_20150 PF00990 Diguanylate cyclase, GGDEF domain AL549_20150 PF00563 EAL domain AL549_20150 PF03707 Bacterial signalling protein N terminal repeat AL549_20155 PF00011 Hsp20/alpha crystallin family AL549_20160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_20160 PF00986 DNA gyrase B subunit, carboxyl terminus AL549_20160 PF00204 DNA gyrase B AL549_20160 PF01751 Toprim domain AL549_20160 PF18053 DNA gyrase B subunit insert domain AL549_20165 PF02463 RecF/RecN/SMC N terminal domain AL549_20170 PF00712 DNA polymerase III beta subunit, N-terminal domain AL549_20170 PF02767 DNA polymerase III beta subunit, central domain AL549_20170 PF02768 DNA polymerase III beta subunit, C-terminal domain AL549_20175 PF00308 Bacterial dnaA protein AL549_20175 PF08299 Bacterial dnaA protein helix-turn-helix AL549_20175 PF11638 DnaA N-terminal domain AL549_20180 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_20185 PF00528 Binding-protein-dependent transport system inner membrane component AL549_20190 PF00005 ABC transporter AL549_20195 PF00468 Ribosomal protein L34 AL549_20200 PF00825 Ribonuclease P AL549_20205 PF14849 YidC periplasmic domain AL549_20205 PF02096 60Kd inner membrane protein AL549_20210 PF10396 GTP-binding protein TrmE N-terminus AL549_20210 PF01926 50S ribosome-binding GTPase AL549_20210 PF12631 MnmE helical domain AL549_20215 PF00258 Flavodoxin AL549_20220 PF01134 Glucose inhibited division protein A AL549_20220 PF13932 GidA associated domain AL549_20225 PF02527 rRNA small subunit methyltransferase G AL549_20230 PF13614 AAA domain AL549_20235 PF02195 ParB-like nuclease domain AL549_20235 PF17762 HTH domain found in ParB protein AL549_20240 PF03899 ATP synthase I chain AL549_20245 PF00119 ATP synthase A chain AL549_20250 PF00137 ATP synthase subunit C AL549_20255 PF00430 ATP synthase B/B' CF(0) AL549_20260 PF00213 ATP synthase delta (OSCP) subunit AL549_20265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_20265 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL549_20265 PF00306 ATP synthase alpha/beta chain, C terminal domain AL549_20270 PF00231 ATP synthase AL549_20275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_20275 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL549_20280 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL549_20280 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL549_20285 PF14602 Hexapeptide repeat of succinyl-transferase AL549_20285 PF12804 MobA-like NTP transferase domain AL549_20285 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_20290 PF00528 Binding-protein-dependent transport system inner membrane component AL549_20295 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_20300 PF07690 Major Facilitator Superfamily AL549_20305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_20305 PF03466 LysR substrate binding domain AL549_20310 PF00291 Pyridoxal-phosphate dependent enzyme AL549_20310 PF00585 C-terminal regulatory domain of Threonine dehydratase AL549_20315 PF00920 Dehydratase family AL549_20320 PF01063 Amino-transferase class IV AL549_20330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_20330 PF00205 Thiamine pyrophosphate enzyme, central domain AL549_20330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_20335 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL549_20335 PF01078 Magnesium chelatase, subunit ChlI AL549_20345 PF01553 Acyltransferase AL549_20350 PF01323 DSBA-like thioredoxin domain AL549_20355 PF01636 Phosphotransferase enzyme family AL549_20360 PF12801 4Fe-4S binding domain AL549_20360 PF13746 4Fe-4S dicluster domain AL549_20360 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL549_20365 PF06288 Protein of unknown function (DUF1040) AL549_20370 PF07070 SpoOM protein AL549_20375 PF03006 Haemolysin-III related AL549_20380 PF02386 Cation transport protein AL549_20385 PF02080 TrkA-C domain AL549_20385 PF02254 TrkA-N domain AL549_20390 PF01029 NusB family AL549_20390 PF01189 16S rRNA methyltransferase RsmB/F AL549_20395 PF00551 Formyl transferase AL549_20395 PF02911 Formyl transferase, C-terminal domain AL549_20400 PF01327 Polypeptide deformylase AL549_20410 PF17782 DprA winged helix domain AL549_20410 PF02481 DNA recombination-mediator protein A AL549_20415 PF04361 Protein of unknown function (DUF494) AL549_20420 PF01396 Topoisomerase DNA binding C4 zinc finger AL549_20425 PF02222 ATP-grasp domain AL549_20425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL549_20430 PF00731 AIR carboxylase AL549_20435 PF01300 Telomere recombination AL549_20440 PF01218 Coproporphyrinogen III oxidase AL549_20445 PF01488 Shikimate / quinate 5-dehydrogenase AL549_20445 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL549_20445 PF08501 Shikimate dehydrogenase substrate binding domain AL549_20450 PF07369 Protein of unknown function (DUF1488) AL549_20455 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_20505 PF00394 Multicopper oxidase AL549_20505 PF07731 Multicopper oxidase AL549_20505 PF07732 Multicopper oxidase AL549_20510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL549_20515 PF01964 Radical SAM ThiC family AL549_20515 PF13667 ThiC-associated domain AL549_20520 PF02581 Thiamine monophosphate synthase AL549_20525 PF00899 ThiF family AL549_20535 PF05690 Thiazole biosynthesis protein ThiG AL549_20540 PF04055 Radical SAM superfamily AL549_20540 PF06968 Biotin and Thiamin Synthesis associated domain AL549_20545 PF00557 Metallopeptidase family M24 AL549_20545 PF01321 Creatinase/Prolidase N-terminal domain AL549_20545 PF00557 Metallopeptidase family M24 AL549_20545 PF01321 Creatinase/Prolidase N-terminal domain AL549_20550 PF03466 LysR substrate binding domain AL549_20550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_20555 PF07690 Major Facilitator Superfamily AL549_20575 PF05114 Protein of unknown function (DUF692) AL549_20585 PF13361 UvrD-like helicase C-terminal domain AL549_20585 PF00580 UvrD/REP helicase N-terminal domain AL549_20590 PF01810 LysE type translocator AL549_20600 PF00892 EamA-like transporter family AL549_20605 PF00570 HRDC domain AL549_20605 PF00271 Helicase conserved C-terminal domain AL549_20605 PF00270 DEAD/DEAH box helicase AL549_20605 PF09382 RQC domain AL549_20605 PF16124 RecQ zinc-binding AL549_20615 PF02592 Putative vitamin uptake transporter AL549_20620 PF02541 Ppx/GppA phosphatase family AL549_20625 PF00271 Helicase conserved C-terminal domain AL549_20625 PF00270 DEAD/DEAH box helicase AL549_20630 PF00085 Thioredoxin AL549_20635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_20635 PF07498 Rho termination factor, N-terminal domain AL549_20635 PF07497 Rho termination factor, RNA-binding domain AL549_20645 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL549_20650 PF00175 Oxidoreductase NAD-binding domain AL549_20650 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_20650 PF00970 Oxidoreductase FAD-binding domain AL549_20655 PF00175 Oxidoreductase NAD-binding domain AL549_20745 PF02646 RmuC family AL549_20750 PF01209 ubiE/COQ5 methyltransferase family AL549_20755 PF02036 SCP-2 sterol transfer family AL549_20760 PF03109 ABC1 family AL549_20765 PF02416 mttA/Hcf106 family AL549_20770 PF02416 mttA/Hcf106 family AL549_20775 PF00902 Sec-independent protein translocase protein (TatC) AL549_20780 PF01026 TatD related DNase AL549_20785 PF00490 Delta-aminolevulinic acid dehydratase AL549_20790 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL549_20790 PF01367 5'-3' exonuclease, C-terminal SAM fold AL549_20790 PF01612 3'-5' exonuclease AL549_20790 PF00476 DNA polymerase family A AL549_20795 PF01926 50S ribosome-binding GTPase AL549_20800 PF00034 Cytochrome c AL549_20810 PF04220 Der GTPase activator (YihI) AL549_20815 PF10675 Protein of unknown function (DUF2489) AL549_20820 PF06969 HemN C-terminal domain AL549_20820 PF04055 Radical SAM superfamily AL549_20825 PF03707 Bacterial signalling protein N terminal repeat AL549_20825 PF13188 PAS domain AL549_20825 PF00563 EAL domain AL549_20825 PF00990 Diguanylate cyclase, GGDEF domain AL549_20830 PF02954 Bacterial regulatory protein, Fis family AL549_20830 PF00072 Response regulator receiver domain AL549_20830 PF00158 Sigma-54 interaction domain AL549_20835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_20835 PF00989 PAS fold AL549_20835 PF00512 His Kinase A (phospho-acceptor) domain AL549_20845 PF00120 Glutamine synthetase, catalytic domain AL549_20845 PF03951 Glutamine synthetase, beta-Grasp domain AL549_20865 PF03631 Virulence factor BrkB AL549_20870 PF02580 D-Tyr-tRNA(Tyr) deacylase AL549_20875 PF00583 Acetyltransferase (GNAT) family AL549_20875 PF09500 Putative thioesterase (yiiD_Cterm) AL549_20885 PF01293 Phosphoenolpyruvate carboxykinase AL549_20890 PF01430 Hsp33 protein AL549_20895 PF01479 S4 domain AL549_20900 PF11356 Type II secretion system protein C AL549_20905 PF00263 Bacterial type II and III secretion system protein AL549_20905 PF03958 Bacterial type II/III secretion system short domain AL549_20910 PF00437 Type II/IV secretion system protein AL549_20915 PF00482 Type II secretion system (T2SS), protein F AL549_20920 PF07963 Prokaryotic N-terminal methylation motif AL549_20920 PF08334 Type II secretion system (T2SS), protein G AL549_20925 PF12019 Type II transport protein GspH AL549_20930 PF02501 Type II secretion system (T2SS), protein I AL549_20930 PF07963 Prokaryotic N-terminal methylation motif AL549_20935 PF07963 Prokaryotic N-terminal methylation motif AL549_20935 PF11612 Type II secretion system (T2SS), protein J AL549_20940 PF03934 Type II secretion system (T2SS), protein K AL549_20945 PF12693 GspL periplasmic domain AL549_20945 PF05134 Type II secretion system (T2SS), protein L AL549_20950 PF04612 Type II secretion system (T2SS), protein M AL549_20955 PF01203 Type II secretion system (T2SS), protein N AL549_20960 PF00459 Inositol monophosphatase family AL549_20965 PF00293 NUDIX domain AL549_20970 PF01106 NifU-like domain AL549_20970 PF01521 Iron-sulphur cluster biosynthesis AL549_20980 PF00561 alpha/beta hydrolase fold AL549_20990 PF16921 Tex protein YqgF-like domain AL549_20990 PF09371 Tex-like protein N-terminal domain AL549_20990 PF17674 HHH domain AL549_20990 PF00575 S1 RNA binding domain AL549_20995 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_20995 PF03449 Transcription elongation factor, N-terminal AL549_21000 PF00072 Response regulator receiver domain AL549_21000 PF00486 Transcriptional regulatory protein, C terminal AL549_21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_21005 PF00672 HAMP domain AL549_21005 PF00512 His Kinase A (phospho-acceptor) domain AL549_21010 PF00860 Permease family AL549_21015 PF00271 Helicase conserved C-terminal domain AL549_21015 PF00270 DEAD/DEAH box helicase AL549_21015 PF17191 RecG wedge domain AL549_21020 PF12105 SpoU, rRNA methylase, C-terminal AL549_21020 PF00588 SpoU rRNA Methylase family AL549_21025 PF02824 TGS domain AL549_21025 PF04607 Region found in RelA / SpoT proteins AL549_21025 PF13291 ACT domain AL549_21030 PF01192 RNA polymerase Rpb6 AL549_21035 PF00625 Guanylate kinase AL549_21050 PF02472 Biopolymer transport protein ExbD/TolR AL549_21055 PF01618 MotA/TolQ/ExbB proton channel family AL549_21060 PF01618 MotA/TolQ/ExbB proton channel family AL549_21070 PF07715 TonB-dependent Receptor Plug Domain AL549_21070 PF00593 TonB dependent receptor AL549_21075 PF00528 Binding-protein-dependent transport system inner membrane component AL549_21080 PF00528 Binding-protein-dependent transport system inner membrane component AL549_21080 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_21085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_21090 PF00005 ABC transporter AL549_21090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_21095 PF00005 ABC transporter AL549_21095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_21120 PF00892 EamA-like transporter family AL549_21125 PF08340 Domain of unknown function (DUF1732) AL549_21125 PF03755 YicC-like family, N-terminal region AL549_21130 PF03725 3' exoribonuclease family, domain 2 AL549_21130 PF01138 3' exoribonuclease family, domain 1 AL549_21135 PF00156 Phosphoribosyl transferase domain AL549_21140 PF03279 Bacterial lipid A biosynthesis acyltransferase AL549_21145 PF00440 Bacterial regulatory proteins, tetR family AL549_21150 PF02441 Flavoprotein AL549_21150 PF04127 DNA / pantothenate metabolism flavoprotein AL549_21155 PF02743 Cache domain AL549_21155 PF00672 HAMP domain AL549_21155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_21160 PF04002 RadC-like JAB domain AL549_21165 PF00830 Ribosomal L28 family AL549_21170 PF00471 Ribosomal protein L33 AL549_21180 PF06827 Zinc finger found in FPG and IleRS AL549_21180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL549_21180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL549_21190 PF01467 Cytidylyltransferase-like AL549_21195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_21200 PF00535 Glycosyl transferase family 2 AL549_21205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_21210 PF01219 Prokaryotic diacylglycerol kinase AL549_21220 PF11893 Domain of unknown function (DUF3413) AL549_21220 PF00884 Sulfatase AL549_21230 PF02719 Polysaccharide biosynthesis protein AL549_21235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL549_21240 PF02350 UDP-N-acetylglucosamine 2-epimerase AL549_21245 PF03102 NeuB family AL549_21245 PF08666 SAF domain AL549_21255 PF00483 Nucleotidyl transferase AL549_21260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_21260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL549_21265 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_21270 PF02348 Cytidylyltransferase AL549_21280 PF13439 Glycosyltransferase Family 4 AL549_21280 PF00534 Glycosyl transferases group 1 AL549_21290 PF13193 AMP-binding enzyme C-terminal domain AL549_21290 PF00501 AMP-binding enzyme AL549_21295 PF00465 Iron-containing alcohol dehydrogenase AL549_21320 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL549_21325 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_21330 PF03279 Bacterial lipid A biosynthesis acyltransferase AL549_21335 PF01370 NAD dependent epimerase/dehydratase family AL549_21340 PF06082 Exopolysaccharide biosynthesis protein YbjH AL549_21350 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AL549_21375 PF02563 Polysaccharide biosynthesis/export protein AL549_21375 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL549_21375 PF10531 SLBB domain AL549_21385 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL549_21390 PF13614 AAA domain AL549_21390 PF13807 G-rich domain on putative tyrosine kinase AL549_21390 PF02706 Chain length determinant protein AL549_21410 PF04991 LicD family AL549_21415 PF04991 LicD family AL549_21430 PF01797 Transposase IS200 like AL549_21440 PF02719 Polysaccharide biosynthesis protein AL549_21440 PF08485 Polysaccharide biosynthesis protein C-terminal AL549_21445 PF01370 NAD dependent epimerase/dehydratase family AL549_21450 PF02350 UDP-N-acetylglucosamine 2-epimerase AL549_21470 PF00953 Glycosyl transferase family 4 AL549_21475 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL549_21475 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL549_21485 PF10996 Beta-Casp domain AL549_21485 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL549_21485 PF00753 Metallo-beta-lactamase superfamily AL549_21495 PF00338 Ribosomal protein S10p/S20e AL549_21500 PF00297 Ribosomal protein L3 AL549_21505 PF00573 Ribosomal protein L4/L1 family AL549_21510 PF00276 Ribosomal protein L23 AL549_21515 PF03947 Ribosomal Proteins L2, C-terminal domain AL549_21515 PF00181 Ribosomal Proteins L2, RNA binding domain AL549_21520 PF00203 Ribosomal protein S19 AL549_21525 PF00237 Ribosomal protein L22p/L17e AL549_21530 PF00189 Ribosomal protein S3, C-terminal domain AL549_21530 PF07650 KH domain AL549_21535 PF00252 Ribosomal protein L16p/L10e AL549_21540 PF00831 Ribosomal L29 protein AL549_21545 PF00366 Ribosomal protein S17 AL549_21550 PF00238 Ribosomal protein L14p/L23e AL549_21555 PF00467 KOW motif AL549_21555 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL549_21560 PF00673 ribosomal L5P family C-terminus AL549_21560 PF00281 Ribosomal protein L5 AL549_21565 PF00253 Ribosomal protein S14p/S29e AL549_21570 PF00410 Ribosomal protein S8 AL549_21575 PF00347 Ribosomal protein L6 AL549_21580 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL549_21585 PF03719 Ribosomal protein S5, C-terminal domain AL549_21585 PF00333 Ribosomal protein S5, N-terminal domain AL549_21590 PF00327 Ribosomal protein L30p/L7e AL549_21595 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL549_21600 PF00344 SecY translocase AL549_21605 PF00444 Ribosomal protein L36 AL549_21610 PF00416 Ribosomal protein S13/S18 AL549_21615 PF00411 Ribosomal protein S11 AL549_21620 PF01479 S4 domain AL549_21620 PF00163 Ribosomal protein S4/S9 N-terminal domain AL549_21625 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL549_21625 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL549_21625 PF01000 RNA polymerase Rpb3/RpoA insert domain AL549_21630 PF01196 Ribosomal protein L17 AL549_21640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_21640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_21645 PF08525 Opacity-associated protein A N-terminal motif AL549_21645 PF04225 Opacity-associated protein A LysM-like domain AL549_21655 PF13673 Acetyltransferase (GNAT) domain AL549_21665 PF00149 Calcineurin-like phosphoesterase AL549_21665 PF02872 5'-nucleotidase, C-terminal domain AL549_21670 PF10414 Sirohaem synthase dimerisation region AL549_21670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_21670 PF14824 Sirohaem biosynthesis protein central AL549_21675 PF01507 Phosphoadenosine phosphosulfate reductase family AL549_21680 PF00009 Elongation factor Tu GTP binding domain AL549_21685 PF03600 Citrate transporter AL549_21685 PF02080 TrkA-C domain AL549_21710 PF12704 MacB-like periplasmic core domain AL549_21710 PF02687 FtsX-like permease family AL549_21710 PF00005 ABC transporter AL549_21725 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL549_21735 PF01625 Peptide methionine sulfoxide reductase AL549_21740 PF01103 Surface antigen AL549_21740 PF07244 Surface antigen variable number repeat AL549_21740 PF17243 POTRA domain TamA domain 1 AL549_21745 PF04357 TamB, inner membrane protein subunit of TAM complex AL549_21750 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL549_21760 PF00719 Inorganic pyrophosphatase AL549_21765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL549_21770 PF01225 Mur ligase family, catalytic domain AL549_21770 PF02875 Mur ligase family, glutamate ligase domain AL549_21770 PF08245 Mur ligase middle domain AL549_21775 PF02441 Flavoprotein AL549_21785 PF00528 Binding-protein-dependent transport system inner membrane component AL549_21790 PF00005 ABC transporter AL549_21795 PF04751 Protein of unknown function (DUF615) AL549_21800 PF01523 Putative modulator of DNA gyrase AL549_21805 PF03448 MgtE intracellular N domain AL549_21805 PF00571 CBS domain AL549_21805 PF01769 Divalent cation transporter AL549_21810 PF00381 PTS HPr component phosphorylation site AL549_21815 PF03668 P-loop ATPase protein family AL549_21820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_21825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL549_21830 PF04552 Sigma-54, DNA binding domain AL549_21830 PF04963 Sigma-54 factor, core binding domain AL549_21830 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL549_21835 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL549_21835 PF00005 ABC transporter AL549_21840 PF03968 OstA-like protein AL549_21855 PF00571 CBS domain AL549_21855 PF01380 SIS domain AL549_21860 PF01699 Sodium/calcium exchanger protein AL549_21865 PF00005 ABC transporter AL549_21870 PF02405 Permease MlaE AL549_21875 PF02470 MlaD protein AL549_21880 PF05494 MlaC protein AL549_21890 PF01722 BolA-like protein AL549_21895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL549_21900 PF01553 Acyltransferase AL549_21905 PF00582 Universal stress protein family AL549_21915 PF16868 NMT1-like family AL549_21920 PF01316 Arginine repressor, DNA binding domain AL549_21920 PF02863 Arginine repressor, C-terminal domain AL549_21925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL549_21925 PF00056 lactate/malate dehydrogenase, NAD binding domain AL549_21930 PF00348 Polyprenyl synthetase AL549_21935 PF00829 Ribosomal prokaryotic L21 protein AL549_21940 PF01016 Ribosomal L27 protein AL549_21945 PF01926 50S ribosome-binding GTPase AL549_21945 PF01018 GTP1/OBG AL549_21950 PF06738 Putative threonine/serine exporter AL549_21955 PF12821 Threonine/Serine exporter, ThrE AL549_21960 PF00186 Dihydrofolate reductase AL549_21965 PF00149 Calcineurin-like phosphoesterase AL549_21970 PF04379 ApaG domain AL549_21975 PF00398 Ribosomal RNA adenine dimethylase AL549_21980 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL549_21985 PF00639 PPIC-type PPIASE domain AL549_21985 PF09312 SurA N-terminal domain AL549_21990 PF03968 OstA-like protein AL549_21990 PF04453 LPS transport system D AL549_21995 PF05099 Tellurite resistance protein TerB AL549_21995 PF00226 DnaJ domain AL549_22005 PF00694 Aconitase C-terminal domain AL549_22010 PF00330 Aconitase family (aconitate hydratase) AL549_22015 PF00180 Isocitrate/isopropylmalate dehydrogenase AL549_22020 PF08502 LeuA allosteric (dimerisation) domain AL549_22020 PF00682 HMGL-like AL549_22030 PF01569 PAP2 superfamily AL549_22040 PF03466 LysR substrate binding domain AL549_22040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_22045 PF00501 AMP-binding enzyme AL549_22050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_22050 PF00205 Thiamine pyrophosphate enzyme, central domain AL549_22050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_22055 PF10369 Small subunit of acetolactate synthase AL549_22060 PF07694 5TMR of 5TMR-LYT AL549_22060 PF00990 Diguanylate cyclase, GGDEF domain AL549_22070 PF00224 Pyruvate kinase, barrel domain AL549_22070 PF02887 Pyruvate kinase, alpha/beta domain AL549_22075 PF00455 DeoR C terminal sensor domain AL549_22075 PF08220 DeoR-like helix-turn-helix domain AL549_22080 PF01380 SIS domain AL549_22085 PF05068 Mannitol repressor AL549_22090 PF08125 Mannitol dehydrogenase C-terminal domain AL549_22090 PF01232 Mannitol dehydrogenase Rossmann domain AL549_22095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_22095 PF02378 Phosphotransferase system, EIIC AL549_22095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_22100 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_22120 PF04545 Sigma-70, region 4 AL549_22120 PF04539 Sigma-70 region 3 AL549_22120 PF04542 Sigma-70 region 2 AL549_22120 PF00140 Sigma-70 factor, region 1.2 AL549_22120 PF03979 Sigma-70 factor, region 1.1 AL549_22120 PF04546 Sigma-70, non-essential region AL549_22125 PF10410 DnaB-helicase binding domain of primase AL549_22125 PF08278 DNA primase DnaG DnaB-binding AL549_22125 PF08275 DNA primase catalytic core, N-terminal domain AL549_22125 PF01807 CHC2 zinc finger AL549_22130 PF09424 Yqey-like protein AL549_22135 PF01165 Ribosomal protein S21 AL549_22140 PF00814 Glycoprotease family AL549_22145 PF00561 alpha/beta hydrolase fold AL549_22150 PF02660 Glycerol-3-phosphate acyltransferase AL549_22155 PF02152 Dihydroneopterin aldolase AL549_22160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL549_22165 PF02673 Bacitracin resistance protein BacA AL549_22170 PF01966 HD domain AL549_22170 PF01743 Poly A polymerase head domain AL549_22170 PF12627 Probable RNA and SrmB- binding site of polymerase A AL549_22175 PF01471 Putative peptidoglycan binding domain AL549_22175 PF13401 AAA domain AL549_22180 PF08239 Bacterial SH3 domain AL549_22185 PF01384 Phosphate transporter family AL549_22240 PF00925 GTP cyclohydrolase II AL549_22240 PF08719 Domain of unknown function (DUF1768) AL549_22290 PF12838 4Fe-4S dicluster domain AL549_22290 PF13187 4Fe-4S dicluster domain AL549_22315 PF03701 Uncharacterised protein family (UPF0181) AL549_23825 PF04304 Protein of unknown function (DUF454) AL549_23895 PF01809 Putative membrane protein insertion efficiency factor AL549_23935 PF00156 Phosphoribosyl transferase domain