locus-tag class description PF11130 F pilus assembly Type-IV secretion system for plasmid transfer PF06834 TraU protein PF06986 Type-1V conjugative transfer system mating pair stabilisation PF13728 F plasmid transfer operon protein PF07916 TraG-like protein, N-terminal region PF12615 F sex factor protein N terminal PF10412 Type IV secretion-system coupling protein DNA-binding domain PF18272 single-stranded DNA binding TraI N-terminal subdomain PF07057 DNA helicase TraI PF18340 DNA relaxase TraI 2B/2B-like domain PF08751 TrwC relaxase PF01381 Helix-turn-helix PF05973 Phage derived protein Gp49-like (DUF891) PF13614 AAA domain PF00376 MerR family regulatory protein PF00258 Flavodoxin PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF13419 Haloacid dehalogenase-like hydrolase PF03173 Putative carbohydrate binding domain PF03174 Chitobiase/beta-hexosaminidase C-terminal domain PF00728 Glycosyl hydrolase family 20, catalytic domain PF02838 Glycosyl hydrolase family 20, domain 2 PF00403 Heavy-metal-associated domain PF13609 Gram-negative porin PF13609 Gram-negative porin PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF00749 tRNA synthetases class I (E and Q), catalytic domain PF00563 EAL domain PF08495 FIST N domain PF10442 FIST C domain PF00990 Diguanylate cyclase, GGDEF domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF03942 DTW domain PF03942 DTW domain PF00460 Flagella basal body rod protein PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF03963 Flagellar hook capping protein - N-terminal region PF13860 FlgD Ig-like domain PF13861 FlgD Tudor-like domain PF07559 Flagellar basal body protein FlaE PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF02107 Flagellar L-ring protein PF02119 Flagellar P-ring protein PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PF10135 Rod binding protein PF07196 Flagellin hook IN motif PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00669 Bacterial flagellin N-terminal helical region PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF05524 PEP-utilising enzyme, N-terminal PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF00381 PTS HPr component phosphorylation site PF00291 Pyridoxal-phosphate dependent enzyme PF04354 ZipA, C-terminal FtsZ-binding domain PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF01145 SPFH domain / Band 7 family PF16200 C-terminal region of band_7 PF00085 Thioredoxin PF00106 short chain dehydrogenase PF08338 Domain of unknown function (DUF1731) PF01370 NAD dependent epimerase/dehydratase family PF07556 Protein of unknown function (DUF1538) PF07556 Protein of unknown function (DUF1538) PF12850 Calcineurin-like phosphoesterase superfamily domain PF17323 Trans-membrane regulatory protein ToxS PF12146 Serine aminopeptidase, S33 PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00183 Hsp90 protein PF05191 Adenylate kinase, active site lid PF00762 Ferrochelatase PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00854 POT family PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF01810 LysE type translocator PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF01047 MarR family PF00480 ROK family PF01979 Amidohydrolase family PF01979 Amidohydrolase family PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00749 tRNA synthetases class I (E and Q), catalytic domain PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF01475 Ferric uptake regulator family PF00258 Flavodoxin PF12697 Alpha/beta hydrolase family PF00563 EAL domain PF08668 HDOD domain PF00563 EAL domain PF08668 HDOD domain PF03925 SeqA protein C-terminal domain PF17206 SeqA protein N-terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF13309 HTH domain PF08348 YheO-like PAS domain PF13309 HTH domain PF08348 YheO-like PAS domain PF01042 Endoribonuclease L-PSP PF00375 Sodium:dicarboxylate symporter family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01784 NIF3 (NGG1p interacting factor 3) PF00285 Citrate synthase, C-terminal domain PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF01022 Bacterial regulatory protein, arsR family PF01022 Bacterial regulatory protein, arsR family PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF13085 2Fe-2S iron-sulfur cluster binding domain PF16078 2-oxoglutarate dehydrogenase N-terminus PF00676 Dehydrogenase E1 component PF16870 2-oxoglutarate dehydrogenase C-terminal PF02779 Transketolase, pyrimidine binding domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF08442 ATP-grasp domain PF00549 CoA-ligase PF02629 CoA binding domain PF00549 CoA-ligase PF00950 ABC 3 transport family PF00005 ABC transporter PF01297 Zinc-uptake complex component A periplasmic PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF04023 FeoA domain PF07664 Ferrous iron transport protein B C terminus PF02421 Ferrous iron transport protein B PF07670 Nucleoside recognition PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF06185 YecM protein PF01842 ACT domain PF00551 Formyl transferase PF13307 Helicase C-terminal domain PF04851 Type III restriction enzyme, res subunit PF00814 Glycoprotease family PF00561 alpha/beta hydrolase fold PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF01612 3'-5' exonuclease PF00570 HRDC domain PF03776 Septum formation topological specificity factor MinE PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03775 Septum formation inhibitor MinC, C-terminal domain PF05209 Septum formation inhibitor MinC, N-terminal domain PF05166 YcgL domain PF13406 Transglycosylase SLT domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07670 Nucleoside recognition PF07662 Na+ dependent nucleoside transporter C-terminus PF01773 Na+ dependent nucleoside transporter N-terminus PF07670 Nucleoside recognition PF07662 Na+ dependent nucleoside transporter C-terminus PF01773 Na+ dependent nucleoside transporter N-terminus PF07670 Nucleoside recognition PF07662 Na+ dependent nucleoside transporter C-terminus PF01773 Na+ dependent nucleoside transporter N-terminus PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF18719 ArlS sensor domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00221 Aromatic amino acid lyase PF00535 Glycosyl transferase family 2 PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00550 Phosphopantetheine attachment site PF00550 Phosphopantetheine attachment site PF04820 Tryptophan halogenase PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF17912 MalK OB fold domain PF03459 TOBE domain PF03480 Bacterial extracellular solute-binding protein, family 7 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02743 Cache domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02743 Cache domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF00574 Clp protease PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF00216 Bacterial DNA-binding protein PF13145 PPIC-type PPIASE domain PF01966 HD domain PF13286 Phosphohydrolase-associated domain PF00155 Aminotransferase class I and II PF00425 chorismate binding enzyme PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF16582 Middle domain of thiamine pyrophosphate PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF12697 Alpha/beta hydrolase family PF00378 Enoyl-CoA hydratase/isomerase PF13378 Enolase C-terminal domain-like PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF03601 Conserved hypothetical protein 698 PF07690 Major Facilitator Superfamily PF01914 MarC family integral membrane protein PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF00291 Pyridoxal-phosphate dependent enzyme PF01037 Lrp/AsnC ligand binding domain PF13404 AsnC-type helix-turn-helix domain PF02463 RecF/RecN/SMC N terminal domain PF09619 Type III secretion system lipoprotein chaperone (YscW) PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF07969 Amidohydrolase family PF07969 Amidohydrolase family PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01263 Aldose 1-epimerase PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01641 SelR domain PF07023 Protein of unknown function (DUF1315) PF00710 Asparaginase, N-terminal PF17763 Glutaminase/Asparaginase C-terminal domain PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF01343 Peptidase family S49 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00881 Nitroreductase family PF01131 DNA topoisomerase PF01751 Toprim domain PF00850 Histone deacetylase domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF13091 PLD-like domain PF04074 YhcH/YjgK/YiaL PF00005 ABC transporter PF02386 Cation transport protein PF02080 TrkA-C domain PF02254 TrkA-N domain PF11893 Domain of unknown function (DUF3413) PF00884 Sulfatase PF07208 Protein of unknown function (DUF1414) PF04245 37-kD nucleoid-associated bacterial protein PF03553 Na+/H+ antiporter family PF18075 FtsX extracellular domain PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00027 Cyclic nucleotide-binding domain PF00520 Ion transport protein PF01914 MarC family integral membrane protein PF00171 Aldehyde dehydrogenase family PF00465 Iron-containing alcohol dehydrogenase PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF00462 Glutaredoxin PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF13726 Na+-H+ antiporter family PF03553 Na+/H+ antiporter family PF00929 Exonuclease PF18393 MotY N-terminal domain PF00691 OmpA family PF10952 Protein of unknown function (DUF2753) PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF10576 Iron-sulfur binding domain of endonuclease III PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF02508 Rnf-Nqr subunit, membrane protein PF04205 FMN-binding domain PF03116 NQR2, RnfD, RnfE family PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF12838 4Fe-4S dicluster domain PF13375 RnfC Barrel sandwich hybrid domain PF10531 SLBB domain PF04060 Putative Fe-S cluster PF02508 Rnf-Nqr subunit, membrane protein PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF01627 Hpt domain PF01933 Uncharacterised protein family UPF0052 PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF00994 Probable molybdopterin binding domain PF00581 Rhodanese-like domain PF01967 MoaC family PF02597 ThiS family PF02391 MoaE protein PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF13409 Glutathione S-transferase, N-terminal domain PF01694 Rhomboid family PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease PF03795 YCII-related domain PF03061 Thioesterase superfamily PF04279 Intracellular septation protein A PF00375 Sodium:dicarboxylate symporter family PF00290 Tryptophan synthase alpha chain PF00291 Pyridoxal-phosphate dependent enzyme PF00218 Indole-3-glycerol phosphate synthase PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF03748 Flagellar basal body-associated protein FliL PF00117 Glutamine amidotransferase class-I PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF08056 Tryptophan operon leader peptide PF02811 PHP domain PF01300 Telomere recombination PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF04269 Protein of unknown function, DUF440 PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF18053 DNA gyrase B subunit insert domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF04345 Chorismate lyase PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08447 PAS fold PF08448 PAS fold PF00136 DNA polymerase family B PF03104 DNA polymerase family B, exonuclease domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01541 GIY-YIG catalytic domain PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF01066 CDP-alcohol phosphatidyltransferase PF01040 UbiA prenyltransferase family PF00202 Aminotransferase class-III PF16653 Saccharopine dehydrogenase C-terminal domain PF03435 Saccharopine dehydrogenase NADP binding domain PF02464 Competence-damaged protein PF00994 Probable molybdopterin binding domain PF00268 Ribonucleotide reductase, small chain PF03477 ATP cone domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF01553 Acyltransferase PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF02335 Cytochrome c552 PF13247 4Fe-4S dicluster domain PF03916 Polysulphide reductase, NrfD PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PF01578 Cytochrome C assembly protein PF08534 Redoxin PF01726 LexA DNA binding domain PF00717 Peptidase S24-like PF03918 Cytochrome C biogenesis protein PF09334 tRNA synthetases class I (M) PF01588 Putative tRNA binding domain PF10609 NUBPL iron-transfer P-loop NTPase PF00485 Phosphoribulokinase / Uridine kinase family PF12557 Cob(I)alamin adenosyltransferase N terminal PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF01451 Low molecular weight phosphotyrosine protein phosphatase PF01740 STAS domain PF00916 Sulfate permease family PF12111 Polyribonucleotide phosphorylase C terminal PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF02545 Maf-like protein PF02620 Large ribosomal RNA subunit accumulation protein YceD PF01783 Ribosomal L32p protein family PF02504 Fatty acid synthesis protein PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF00698 Acyl transferase domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00550 Phosphopantetheine attachment site PF01063 Amino-transferase class IV PF02618 YceG-like family PF02223 Thymidylate kinase PF09115 DNA polymerase III, delta subunit, C terminal PF01026 TatD related DNase PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00209 Sodium:neurotransmitter symporter family PF01734 Patatin-like phospholipase PF01734 Patatin-like phospholipase PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF00480 ROK family PF01584 CheW-like domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF00440 Bacterial regulatory proteins, tetR family PF00106 short chain dehydrogenase PF01343 Peptidase family S49 PF08496 Peptidase family S49 N-terminal PF02224 Cytidylate kinase PF00575 S1 RNA binding domain PF00216 Bacterial DNA-binding protein PF06305 Lipopolysaccharide assembly protein A domain PF18073 Rubredoxin metal binding domain PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF05958 tRNA (Uracil-5-)-methyltransferase PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF01037 Lrp/AsnC ligand binding domain PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF17854 FtsK alpha domain PF09397 Ftsk gamma domain PF01580 FtsK/SpoIIIE family PF03548 Outer membrane lipoprotein carrier protein LolA PF00004 ATPase family associated with various cellular activities (AAA) PF16193 AAA C-terminal domain PF12002 MgsA AAA+ ATPase C terminal PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF00011 Hsp20/alpha crystallin family PF00202 Aminotransferase class-III PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF00155 Aminotransferase class I and II PF08241 Methyltransferase domain PF01435 Peptidase family M48 PF00106 short chain dehydrogenase PF08328 Adenylosuccinate lyase C-terminal PF00206 Lyase PF04356 Protein of unknown function (DUF489) PF00294 pfkB family carbohydrate kinase PF00294 pfkB family carbohydrate kinase PF00816 H-NS histone family PF03553 Na+/H+ antiporter family PF01634 ATP phosphoribosyltransferase PF08029 HisG, C-terminal domain PF00815 Histidinol dehydrogenase PF00155 Aminotransferase class I and II PF00475 Imidazoleglycerol-phosphate dehydratase PF08645 Polynucleotide kinase 3 phosphatase PF00117 Glutamine amidotransferase class-I PF00977 Histidine biosynthesis protein PF00977 Histidine biosynthesis protein PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF02810 SEC-C motif PF02810 SEC-C motif PF00149 Calcineurin-like phosphoesterase PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF00265 Thymidine kinase PF01370 NAD dependent epimerase/dehydratase family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01226 Formate/nitrite transporter PF01226 Formate/nitrite transporter PF13411 MerR HTH family regulatory protein PF13411 MerR HTH family regulatory protein PF03649 Uncharacterised protein family (UPF0014) PF03264 NapC/NirT cytochrome c family, N-terminal region PF03264 NapC/NirT cytochrome c family, N-terminal region PF00384 Molybdopterin oxidoreductase PF18364 Molybdopterin oxidoreductase N-terminal domain PF01568 Molydopterin dinucleotide binding domain PF16874 Glycosyl hydrolase family 36 C-terminal domain PF16875 Glycosyl hydrolase family 36 N-terminal domain PF16874 Glycosyl hydrolase family 36 C-terminal domain PF16875 Glycosyl hydrolase family 36 N-terminal domain PF01368 DHH family PF02833 DHHA2 domain PF00005 ABC transporter PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF04012 PspA/IM30 family PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF06667 Phage shock protein B PF04024 PspC domain PF13533 Biotin-lipoyl like PF13533 Biotin-lipoyl like PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF03352 Methyladenine glycosylase PF01053 Cys/Met metabolism PLP-dependent enzyme PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF00209 Sodium:neurotransmitter symporter family PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00849 RNA pseudouridylate synthase PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF03063 Prismane/CO dehydrogenase family PF01590 GAF domain PF00158 Sigma-54 interaction domain PF01066 CDP-alcohol phosphatidyltransferase PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF13416 Bacterial extracellular solute-binding protein PF06945 Protein of unknown function (DUF1289) PF01386 Ribosomal L25p family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF07690 Major Facilitator Superfamily PF00999 Sodium/hydrogen exchanger family PF11066 Protein of unknown function (DUF2867) PF13460 NAD(P)H-binding PF00005 ABC transporter PF06965 Na+/H+ antiporter 1 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF09317 Domain of unknown function (DUF1974) PF07055 Enoyl reductase FAD binding domain PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PF12241 Trans-2-enoyl-CoA reductase catalytic region PF06826 Predicted Permease Membrane Region PF02080 TrkA-C domain PF00462 Glutaredoxin PF00465 Iron-containing alcohol dehydrogenase PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF00282 Pyridoxal-dependent decarboxylase conserved domain PF03956 Lysine exporter LysO PF04994 TfoX C-terminal domain PF04993 TfoX N-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF13188 PAS domain PF13426 PAS domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF13188 PAS domain PF13426 PAS domain PF00266 Aminotransferase class-V PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00266 Aminotransferase class-V PF00939 Sodium:sulfate symporter transmembrane region PF00939 Sodium:sulfate symporter transmembrane region PF00939 Sodium:sulfate symporter transmembrane region PF02698 DUF218 domain PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF00270 DEAD/DEAH box helicase PF04408 Helicase associated domain (HA2) PF00271 Helicase conserved C-terminal domain PF08482 ATP-dependent helicase C-terminal PF00270 DEAD/DEAH box helicase PF04408 Helicase associated domain (HA2) PF00271 Helicase conserved C-terminal domain PF08482 ATP-dependent helicase C-terminal PF02253 Phospholipase A1 PF01259 SAICAR synthetase PF04172 LrgB-like family PF03788 LrgA family PF08411 Exonuclease C-terminal PF00929 Exonuclease PF02277 Phosphoribosyltransferase PF02654 Cobalamin-5-phosphate synthase PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF01032 FecCD transport family PF00005 ABC transporter PF07690 Major Facilitator Superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01863 Protein of unknown function DUF45 PF05971 RNA methyltransferase PF04204 Homoserine O-succinyltransferase PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF04209 homogentisate 1,2-dioxygenase PF14497 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF14497 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF00313 'Cold-shock' DNA-binding domain PF00313 'Cold-shock' DNA-binding domain PF00313 'Cold-shock' DNA-binding domain PF00141 Peroxidase PF03009 Glycerophosphoryl diester phosphodiesterase family PF03009 Glycerophosphoryl diester phosphodiesterase family PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00005 ABC transporter PF17912 MalK OB fold domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF13416 Bacterial extracellular solute-binding protein PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF01925 Sulfite exporter TauE/SafE PF01925 Sulfite exporter TauE/SafE PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01970 Tripartite tricarboxylate transporter TctA family PF13737 Transposase DDE domain PF13737 Transposase DDE domain PF13737 Transposase DDE domain PF13737 Transposase DDE domain PF13737 Transposase DDE domain PF00285 Citrate synthase, C-terminal domain PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF04303 PrpF protein PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00089 Trypsin PF13358 DDE superfamily endonuclease PF13358 DDE superfamily endonuclease PF13358 DDE superfamily endonuclease PF13358 DDE superfamily endonuclease PF04055 Radical SAM superfamily PF06508 Queuosine biosynthesis protein QueC PF17151 Periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF17151 Periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF10672 S-adenosylmethionine-dependent methyltransferase PF17785 PUA-like domain PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00708 Acylphosphatase PF04358 DsrC like protein PF01027 Inhibitor of apoptosis-promoting Bax1 PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00497 Bacterial extracellular solute-binding proteins, family 3 PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF12800 4Fe-4S binding domain PF12838 4Fe-4S dicluster domain PF13237 4Fe-4S dicluster domain PF12801 4Fe-4S binding domain PF01553 Acyltransferase PF01553 Acyltransferase PF02423 Ornithine cyclodeaminase/mu-crystallin family PF01266 FAD dependent oxidoreductase PF16350 FAD dependent oxidoreductase central domain PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF00582 Universal stress protein family PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF03401 Tripartite tricarboxylate transporter family receptor PF00171 Aldehyde dehydrogenase family PF01613 Flavin reductase like domain PF01047 MarR family PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF01557 Fumarylacetoacetate (FAA) hydrolase family PF03328 HpcH/HpaI aldolase/citrate lyase family PF01557 Fumarylacetoacetate (FAA) hydrolase family PF01557 Fumarylacetoacetate (FAA) hydrolase family PF00171 Aldehyde dehydrogenase family PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF00171 Aldehyde dehydrogenase family PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF02074 Carboxypeptidase Taq (M32) metallopeptidase PF01810 LysE type translocator PF01235 Sodium:alanine symporter family PF00465 Iron-containing alcohol dehydrogenase PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00989 PAS fold PF17203 Single cache domain 3 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00989 PAS fold PF17203 Single cache domain 3 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF12431 Transcriptional regulator PF00072 Response regulator receiver domain PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF02368 Bacterial Ig-like domain (group 2) PF11999 Protein of unknown function (DUF3494) PF02397 Bacterial sugar transferase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00155 Aminotransferase class I and II PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF02563 Polysaccharide biosynthesis/export protein PF10531 SLBB domain PF01740 STAS domain PF01068 ATP dependent DNA ligase domain PF14743 DNA ligase OB-like domain PF00990 Diguanylate cyclase, GGDEF domain PF17158 Membrane-associated sensor, integral membrane domain PF00990 Diguanylate cyclase, GGDEF domain PF17158 Membrane-associated sensor, integral membrane domain PF00990 Diguanylate cyclase, GGDEF domain PF17158 Membrane-associated sensor, integral membrane domain PF00990 Diguanylate cyclase, GGDEF domain PF17158 Membrane-associated sensor, integral membrane domain PF04461 Protein of unknown function (DUF520) PF00793 DAHP synthetase I family PF17783 CvfB-like winged helix domain PF13509 S1 domain PF01189 16S rRNA methyltransferase RsmB/F PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF PF13636 RNA-binding PUA-like domain of methyltransferase RsmF PF02470 MlaD protein PF04403 Paraquat-inducible protein A PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF13185 GAF domain PF04352 ProQ/FINO family PF17516 ProQ C-terminal domain PF11818 C-terminal domain of tail specific protease (DUF3340) PF00595 PDZ domain PF03572 Peptidase family S41 PF17804 Tail specific protease N-terminal domain PF10544 T5orf172 domain PF11940 Domain of unknown function (DUF3458) Ig-like fold PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF01433 Peptidase family M1 domain PF05088 Bacterial NAD-glutamate dehydrogenase PF01180 Dihydroorotate dehydrogenase PF07126 Cell-division protein ZapC PF10672 S-adenosylmethionine-dependent methyltransferase PF02926 THUMP domain PF01170 Putative RNA methylase family UPF0020 PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF04957 Ribosome modulation factor PF07977 FabA-like domain PF13654 AAA domain PF05362 Lon protease (S16) C-terminal proteolytic domain PF13654 AAA domain PF05362 Lon protease (S16) C-terminal proteolytic domain PF06303 MatP N-terminal domain PF17414 MatP C-terminal ribbon-helix-helix domain PF00115 Cytochrome C and Quinol oxidase polypeptide I PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP PF00403 Heavy-metal-associated domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00582 Universal stress protein family PF01171 PP-loop family PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PF00005 ABC transporter PF08402 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF13416 Bacterial extracellular solute-binding protein PF13416 Bacterial extracellular solute-binding protein PF02146 Sir2 family PF00909 Ammonium Transporter Family PF00909 Ammonium Transporter Family PF01177 Asp/Glu/Hydantoin racemase PF13247 4Fe-4S dicluster domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF02634 FdhD/NarQ family PF00005 ABC transporter PF12848 ABC transporter PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08402 TOBE domain PF12804 MobA-like NTP transferase domain PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF00480 ROK family PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17202 Single cache domain 3 PF00877 NlpC/P60 family PF00990 Diguanylate cyclase, GGDEF domain PF05230 MASE2 domain PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF03881 Fructosamine kinase PF00677 Lumazine binding domain PF01554 MatE PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13302 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF05840 Bacteriophage replication gene A protein (GPA) PF00589 Phage integrase family PF13302 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system PF05746 DALR anticodon binding domain PF02092 Glycyl-tRNA synthetase beta subunit PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF02646 RmuC family PF01209 ubiE/COQ5 methyltransferase family PF02036 SCP-2 sterol transfer family PF03109 ABC1 family PF10137 Predicted nucleotide-binding protein containing TIR-like domain PF13673 Acetyltransferase (GNAT) domain PF13673 Acetyltransferase (GNAT) domain PF02416 mttA/Hcf106 family PF02416 mttA/Hcf106 family PF02096 60Kd inner membrane protein PF14849 YidC periplasmic domain PF02091 Glycyl-tRNA synthetase alpha subunit PF00902 Sec-independent protein translocase protein (TatC) PF09905 DNA-binding protein VF530 PF01026 TatD related DNase PF13495 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF00453 Ribosomal protein L20 PF01632 Ribosomal protein L35 PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF03129 Anticodon binding domain PF02824 TGS domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF07070 SpoOM protein PF07070 SpoOM protein PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00490 Delta-aminolevulinic acid dehydratase PF01979 Amidohydrolase family PF00491 Arginase family PF01175 Urocanase Rossmann-like domain PF17392 Urocanase C-terminal domain PF17391 Urocanase N-terminal domain PF00221 Aromatic amino acid lyase PF00089 Trypsin PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF13183 4Fe-4S dicluster domain PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01612 3'-5' exonuclease PF13488 Glycine zipper PF00691 OmpA family PF13488 Glycine zipper PF00691 OmpA family PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region PF02222 ATP-grasp domain PF05724 Thiopurine S-methyltransferase (TPMT) PF00216 Bacterial DNA-binding protein PF01926 50S ribosome-binding GTPase PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF00034 Cytochrome c PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00491 Arginase family PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF03280 Proteobacterial lipase chaperone protein PF00561 alpha/beta hydrolase fold PF00270 DEAD/DEAH box helicase PF11898 Domain of unknown function (DUF3418) PF04408 Helicase associated domain (HA2) PF00271 Helicase conserved C-terminal domain PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF02525 Flavodoxin-like fold PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF04220 Der GTPase activator (YihI) PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF04972 BON domain PF00263 Bacterial type II and III secretion system protein PF13629 Pilus formation protein N terminal region PF04972 BON domain PF00263 Bacterial type II and III secretion system protein PF13629 Pilus formation protein N terminal region PF04972 BON domain PF00263 Bacterial type II and III secretion system protein PF13629 Pilus formation protein N terminal region PF06629 MltA-interacting protein MipA PF01169 Uncharacterized protein family UPF0016 PF10675 Protein of unknown function (DUF2489) PF00012 Hsp70 protein PF00012 Hsp70 protein PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF07963 Prokaryotic N-terminal methylation motif PF07963 Prokaryotic N-terminal methylation motif PF07963 Prokaryotic N-terminal methylation motif PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF13188 PAS domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF13188 PAS domain PF02563 Polysaccharide biosynthesis/export protein PF10531 SLBB domain PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF02563 Polysaccharide biosynthesis/export protein PF10531 SLBB domain PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF02397 Bacterial sugar transferase PF01235 Sodium:alanine symporter family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00210 Ferritin-like domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF03222 Tryptophan/tyrosine permease family PF00781 Diacylglycerol kinase catalytic domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF01966 HD domain PF01966 HD domain PF01966 HD domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF04055 Radical SAM superfamily PF11230 Protein of unknown function (DUF3029) PF11871 Domain of unknown function (DUF3391) PF01966 HD domain PF00563 EAL domain PF05231 MASE1 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00497 Bacterial extracellular solute-binding proteins, family 3 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00497 Bacterial extracellular solute-binding proteins, family 3 PF13302 Acetyltransferase (GNAT) domain PF18024 Helix-turn-helix domain PF13188 PAS domain PF00158 Sigma-54 interaction domain PF05128 Domain of unknown function (DUF697) PF04317 YcjX-like family, DUF463 PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF00293 NUDIX domain PF03222 Tryptophan/tyrosine permease family PF03222 Tryptophan/tyrosine permease family PF03313 Serine dehydratase alpha chain PF03315 Serine dehydratase beta chain PF04940 Sensors of blue-light using FAD PF00563 EAL domain PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF01242 6-pyruvoyl tetrahydropterin synthase PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF00672 HAMP domain PF01966 HD domain PF00155 Aminotransferase class I and II PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02028 BCCT, betaine/carnitine/choline family transporter PF01047 MarR family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF07730 Histidine kinase PF17200 Single Cache domain 2 PF03480 Bacterial extracellular solute-binding protein, family 7 PF03480 Bacterial extracellular solute-binding protein, family 7 PF00753 Metallo-beta-lactamase superfamily PF05951 Bacterial protein of unknown function (DUF882) PF01471 Putative peptidoglycan binding domain PF03734 L,D-transpeptidase catalytic domain PF00925 GTP cyclohydrolase II PF07840 FadR C-terminal domain PF00392 Bacterial regulatory proteins, gntR family PF06450 Bacterial Na+/H+ antiporter B (NhaB) PF02600 Disulfide bond formation protein DsbB PF02810 SEC-C motif PF03695 Uncharacterised protein family (UPF0149) PF01207 Dihydrouridine synthase (Dus) PF03631 Virulence factor BrkB PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF00005 ABC transporter PF02653 Branched-chain amino acid transport system / permease component PF04217 Protein of unknown function, DUF412 PF00871 Acetokinase family PF07085 DRTGG domain PF01515 Phosphate acetyl/butaryl transferase PF08267 Cobalamin-independent synthase, N-terminal domain PF01717 Cobalamin-independent synthase, Catalytic domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02580 D-Tyr-tRNA(Tyr) deacylase PF11842 Domain of unknown function (DUF3362) PF04055 Radical SAM superfamily PF08497 Radical SAM N-terminal PF00583 Acetyltransferase (GNAT) family PF09500 Putative thioesterase (yiiD_Cterm) PF01740 STAS domain PF00916 Sulfate permease family PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00005 ABC transporter PF01293 Phosphoenolpyruvate carboxykinase PF03741 Integral membrane protein TerC family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00465 Iron-containing alcohol dehydrogenase PF00465 Iron-containing alcohol dehydrogenase PF00596 Class II Aldolase and Adducin N-terminal domain PF05025 RbsD / FucU transport protein family PF01430 Hsp33 protein PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF02952 L-fucose isomerase, C-terminal domain PF07881 L-fucose isomerase, first N-terminal domain PF07882 L-fucose isomerase, second N-terminal domain PF07690 Major Facilitator Superfamily PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF13419 Haloacid dehalogenase-like hydrolase PF04229 GrpB protein PF01479 S4 domain PF02223 Thymidylate kinase PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF11867 Domain of unknown function (DUF3387) PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF11867 Domain of unknown function (DUF3387) PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF02384 N-6 DNA Methylase PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF01206 Sulfurtransferase TusA PF12833 Helix-turn-helix domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF03916 Polysulphide reductase, NrfD PF13247 4Fe-4S dicluster domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF11356 Type II secretion system protein C PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF03606 C4-dicarboxylate anaerobic carrier PF00267 Gram-negative porin PF00437 Type II/IV secretion system protein PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF04002 RadC-like JAB domain PF00075 RNase H PF00075 RNase H PF00482 Type II secretion system (T2SS), protein F PF13356 Arm DNA-binding domain PF00589 Phage integrase family PF13356 Arm DNA-binding domain PF00589 Phage integrase family PF13356 Arm DNA-binding domain PF00589 Phage integrase family PF06610 L-alanine exporter PF07963 Prokaryotic N-terminal methylation motif PF08334 Type II secretion system (T2SS), protein G PF03738 Glutathionylspermidine synthase preATP-grasp PF03994 Domain of Unknown Function (DUF350) PF02445 Quinolinate synthetase A protein PF16331 TolA binding protein trimerisation PF13174 Tetratricopeptide repeat PF00691 OmpA family PF07676 WD40-like Beta Propeller Repeat PF04052 TolB amino-terminal domain PF12019 Type II transport protein GspH PF02472 Biopolymer transport protein ExbD/TolR PF01618 MotA/TolQ/ExbB proton channel family PF03061 Thioesterase superfamily PF02322 Cytochrome bd terminal oxidase subunit II PF01654 Cytochrome bd terminal oxidase subunit I PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF07963 Prokaryotic N-terminal methylation motif PF02501 Type II secretion system (T2SS), protein I PF02075 Crossover junction endodeoxyribonuclease RuvC PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF13649 Methyltransferase domain PF08003 Protein of unknown function (DUF1698) PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF05199 GMC oxidoreductase PF00732 GMC oxidoreductase PF07963 Prokaryotic N-terminal methylation motif PF11612 Type II secretion system (T2SS), protein J PF00171 Aldehyde dehydrogenase family PF00171 Aldehyde dehydrogenase family PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF12833 Helix-turn-helix domain PF04310 MukB N-terminal PF16330 MukB hinge domain PF04288 MukE-like family PF03882 MukF winged-helix domain PF17193 MukF C-terminal domain PF17192 MukF middle domain PF13847 Methyltransferase domain PF02698 DUF218 domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02613 Nitrate reductase delta subunit PF00356 Bacterial regulatory proteins, lacI family PF03934 Type II secretion system (T2SS), protein K PF04994 TfoX C-terminal domain PF04993 TfoX N-terminal domain PF00561 alpha/beta hydrolase fold PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF00483 Nucleotidyl transferase PF08272 Topoisomerase I zinc-ribbon-like PF01131 DNA topoisomerase PF01751 Toprim domain PF01396 Topoisomerase DNA binding C4 zinc finger PF12693 GspL periplasmic domain PF05134 Type II secretion system (T2SS), protein L PF10692 Protein of unknown function (DUF2498) PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF04377 Arginine-tRNA-protein transferase, C terminus PF04376 Arginine-tRNA-protein transferase, N terminus PF01176 Translation initiation factor 1A / IF-1 PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF02617 ATP-dependent Clp protease adaptor protein ClpS PF00313 'Cold-shock' DNA-binding domain PF03971 Monomeric isocitrate dehydrogenase PF04612 Type II secretion system (T2SS), protein M PF00849 RNA pseudouridylate synthase PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF13609 Gram-negative porin PF06733 DEAD_2 PF13307 Helicase C-terminal domain PF01925 Sulfite exporter TauE/SafE PF07445 Primosomal replication protein priC PF10689 Protein of unknown function (DUF2496) PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF03372 Endonuclease/Exonuclease/phosphatase family PF01203 Type II secretion system (T2SS), protein N PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00005 ABC transporter PF01228 Glycine radical PF02901 Pyruvate formate lyase-like PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00459 Inositol monophosphatase family PF04055 Radical SAM superfamily PF03887 YfbU domain PF08298 PrkA AAA domain PF06798 PrkA serine protein kinase C-terminal domain PF04285 Protein of unknown function (DUF444) PF04293 SpoVR like protein PF17155 Gammaproteobacterial periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF02348 Cytidylyltransferase PF03966 Trm112p-like protein PF00293 NUDIX domain PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03772 Competence protein PF13567 Domain of unknown function (DUF4131) PF00753 Metallo-beta-lactamase superfamily PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF01521 Iron-sulphur cluster biosynthesis PF01106 NifU-like domain PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF05728 Uncharacterised protein family (UPF0227) PF08139 Prokaryotic membrane lipoprotein lipid attachment site PF13036 Peptidoglycan-synthase activator LpoB PF01230 HIT domain PF00156 Phosphoribosyl transferase domain PF01048 Phosphorylase superfamily PF00403 Heavy-metal-associated domain PF00571 CBS domain PF01743 Poly A polymerase head domain PF00990 Diguanylate cyclase, GGDEF domain PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PF13520 Amino acid permease PF18500 CadC C-terminal domain 1 PF00486 Transcriptional regulatory protein, C terminal PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF13847 Methyltransferase domain PF00245 Alkaline phosphatase PF00561 alpha/beta hydrolase fold PF03692 Putative zinc- or iron-chelating domain PF03692 Putative zinc- or iron-chelating domain PF00230 Major intrinsic protein PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02132 RecR protein PF13662 Toprim domain PF02575 YbaB/EbfC DNA-binding family PF12169 DNA polymerase III subunits gamma and tau domain III PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF12170 DNA polymerase III tau subunit V interacting with alpha PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00156 Phosphoribosyl transferase domain PF00072 Response regulator receiver domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00156 Phosphoribosyl transferase domain PF02674 Colicin V production protein PF05036 Sporulation related domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF01416 tRNA pseudouridine synthase PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF11890 Domain of unknown function (DUF3410) PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF01266 FAD dependent oxidoreductase PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF08891 YfcL protein PF17674 HHH domain PF00575 S1 RNA binding domain PF09371 Tex-like protein N-terminal domain PF16921 Tex protein YqgF-like domain PF04315 Elongation factor P hydroxylase PF03458 UPF0126 domain PF01264 Chorismate synthase PF05175 Methyltransferase small domain PF01713 Smr domain PF00300 Histidine phosphatase superfamily (branch 1) PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PF04333 MlaA lipoprotein PF03918 Cytochrome C biogenesis protein PF03918 Cytochrome C biogenesis protein PF08534 Redoxin PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PF01578 Cytochrome C assembly protein PF03100 CcmE PF04995 Heme exporter protein D (CcmD) PF01578 Cytochrome C assembly protein PF03379 CcmB protein PF00005 ABC transporter PF01584 CheW-like domain PF13614 AAA domain PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF04344 Chemotaxis phosphatase, CheZ PF00072 Response regulator receiver domain PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF10609 NUBPL iron-transfer P-loop NTPase PF00448 SRP54-type protein, GTPase domain PF00771 FHIPEP family PF01312 FlhB HrpN YscU SpaS Family PF01311 Bacterial export proteins, family 1 PF01313 Bacterial export proteins, family 3 PF00813 FliP family PF00860 Permease family PF04347 Flagellar biosynthesis protein, FliO PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF02154 Flagellar motor switch protein FliM PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF18269 T3SS EscN ATPase C-terminal domain PF01706 FliG C-terminal domain PF14841 FliG middle domain PF14842 FliG N-terminal domain PF01514 Secretory protein of YscJ/FliF family PF08345 Flagellar M-ring protein C-terminal PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF02049 Flagellar hook-basal body complex protein FliE PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13188 PAS domain PF06490 Flagellar regulatory protein FleQ PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF02561 Flagellar protein FliS PF07196 Flagellin hook IN motif PF07195 Flagellar hook-associated protein 2 C-terminus PF02465 Flagellar hook-associated protein 2 N-terminus PF03646 FlaG protein PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF12105 SpoU, rRNA methylase, C-terminal PF00588 SpoU rRNA Methylase family PF00700 Bacterial flagellin C-terminal helical region PF07196 Flagellin hook IN motif PF00669 Bacterial flagellin N-terminal helical region PF04261 Dyp-type peroxidase family PF03960 ArsC family PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF06804 NlpB/DapX lipoprotein PF00701 Dihydrodipicolinate synthetase family PF01842 ACT domain PF00578 AhpC/TSA family PF01594 AI-2E family transporter PF01435 Peptidase family M48 PF13181 Tetratricopeptide repeat PF03960 ArsC family PF03358 NADPH-dependent FMN reductase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF01192 RNA polymerase Rpb6 PF00860 Permease family PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00551 Formyl transferase PF13230 Glutamine amidotransferases class-II PF13580 SIS domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF09317 Domain of unknown function (DUF1974) PF00625 Guanylate kinase PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF02525 Flavodoxin-like fold PF00929 Exonuclease PF00075 RNase H PF08241 Methyltransferase domain PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF01476 LysM domain PF01464 Transglycosylase SLT domain PF03372 Endonuclease/Exonuclease/phosphatase family PF00543 Nitrogen regulatory protein P-II PF00034 Cytochrome c PF01171 PP-loop family PF09179 TilS substrate binding domain PF11734 TilS substrate C-terminal domain PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF01351 Ribonuclease HII PF02684 Lipid-A-disaccharide synthetase PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF07977 FabA-like domain PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF03938 Outer membrane protein (OmpH-like) PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF17820 PDZ domain PF02163 Peptidase family M50 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF02472 Biopolymer transport protein ExbD/TolR PF02472 Biopolymer transport protein ExbD/TolR PF01255 Putative undecaprenyl diphosphate synthase PF01765 Ribosome recycling factor PF00696 Amino acid kinase family PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF00557 Metallopeptidase family M24 PF08335 GlnD PII-uridylyltransferase PF01966 HD domain PF01909 Nucleotidyltransferase domain PF11944 Protein of unknown function (DUF3461) PF00849 RNA pseudouridylate synthase PF01618 MotA/TolQ/ExbB proton channel family PF01618 MotA/TolQ/ExbB proton channel family PF01618 MotA/TolQ/ExbB proton channel family PF04287 tRNA pseudouridine synthase C PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF03806 AbgT putative transporter family PF03806 AbgT putative transporter family PF00444 Ribosomal protein L36 PF01197 Ribosomal protein L31 PF01980 tRNA-methyltransferase O PF18389 TrmO C-terminal domain PF01618 MotA/TolQ/ExbB proton channel family PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF06786 Uncharacterised protein family (UPF0253) PF00209 Sodium:neurotransmitter symporter family PF00041 Fibronectin type III domain PF00704 Glycosyl hydrolases family 18 PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00570 HRDC domain PF16124 RecQ zinc-binding PF09382 RQC domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00570 HRDC domain PF16124 RecQ zinc-binding PF09382 RQC domain PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF02424 ApbE family PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF02508 Rnf-Nqr subunit, membrane protein PF02508 Rnf-Nqr subunit, membrane protein PF04205 FMN-binding domain PF03116 NQR2, RnfD, RnfE family PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PF11973 NQRA C-terminal domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01722 BolA-like protein PF05175 Methyltransferase small domain PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF07690 Major Facilitator Superfamily PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF03502 Nucleoside-specific channel-forming protein, Tsx PF02558 Ketopantoate reductase PanE/ApbA PF08546 Ketopantoate reductase PanE/ApbA C terminal PF01965 DJ-1/PfpI family PF00266 Aminotransferase class-V PF02657 Fe-S metabolism associated domain PF00899 ThiF family PF06725 3D domain PF03562 MltA specific insert domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00696 Amino acid kinase family PF00583 Acetyltransferase (GNAT) family PF13538 UvrD-like helicase C-terminal domain PF12705 PD-(D/E)XK nuclease superfamily PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF17946 RecC C-terminal domain PF11893 Domain of unknown function (DUF3413) PF00884 Sulfatase PF11893 Domain of unknown function (DUF3413) PF00884 Sulfatase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07130 YebG protein PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF14602 Hexapeptide repeat of succinyl-transferase PF14789 Tetrahydrodipicolinate N-succinyltransferase middle PF00230 Major intrinsic protein PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF01266 FAD dependent oxidoreductase PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF01544 CorA-like Mg2+ transporter protein PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF02080 TrkA-C domain PF01588 Putative tRNA binding domain PF00356 Bacterial regulatory proteins, lacI family PF01263 Aldose 1-epimerase PF10509 Galactokinase galactose-binding signature PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain PF16363 GDP-mannose 4,6 dehydratase PF00356 Bacterial regulatory proteins, lacI family PF02929 Beta galactosidase small chain PF16353 Domain of unknown function(DUF4981) PF00703 Glycosyl hydrolases family 2 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PF02837 Glycosyl hydrolases family 2, sugar binding domain PF04074 YhcH/YjgK/YiaL PF13520 Amino acid permease PF13520 Amino acid permease PF01204 Trehalase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02417 Chromate transporter PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00501 AMP-binding enzyme PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00892 EamA-like transporter family PF18073 Rubredoxin metal binding domain PF18429 Domain of unknown function (DUF5609) PF01048 Phosphorylase superfamily PF01676 Metalloenzyme superfamily PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain PF01791 DeoC/LacD family aldolase PF01026 TatD related DNase PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF16658 Class II release factor RF3, C-terminal domain PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00583 Acetyltransferase (GNAT) family PF13508 Acetyltransferase (GNAT) domain PF02036 SCP-2 sterol transfer family PF01136 Peptidase family U32 PF01136 Peptidase family U32 PF01554 MatE PF07719 Tetratricopeptide repeat PF13181 Tetratricopeptide repeat PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF00312 Ribosomal protein S15 PF09157 Pseudouridine synthase II TruB, C-terminal PF16198 tRNA pseudouridylate synthase B C-terminal domain PF01509 TruB family pseudouridylate synthase (N terminal domain) PF02033 Ribosome-binding factor A PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF08364 Bacterial translation initiation factor IF-2 associated region PF04760 Translation initiation factor IF-2, N-terminal region PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF02576 RimP N-terminal domain PF17384 RimP C-terminal SH3 domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF03840 Preprotein translocase SecG subunit PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00809 Pterin binding enzyme PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF01728 FtsJ-like methyltransferase PF01985 CRS1 / YhbY (CRM) domain PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF13609 Gram-negative porin PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family PF04304 Protein of unknown function (DUF454) PF00579 tRNA synthetases class I (W and Y) PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF01521 Iron-sulphur cluster biosynthesis PF00202 Aminotransferase class-III PF01594 AI-2E family transporter PF05175 Methyltransferase small domain PF08468 Methyltransferase small domain N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09308 LuxQ, periplasmic PF00072 Response regulator receiver domain PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF08463 EcoEI R protein C-terminal PF00271 Helicase conserved C-terminal domain PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) PF04851 Type III restriction enzyme, res subunit PF01869 BadF/BadG/BcrA/BcrD ATPase family PF00728 Glycosyl hydrolase family 20, catalytic domain PF02838 Glycosyl hydrolase family 20, domain 2 PF00728 Glycosyl hydrolase family 20, catalytic domain PF02838 Glycosyl hydrolase family 20, domain 2 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain PF06165 Glycosyltransferase family 36 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00005 ABC transporter PF08402 TOBE domain PF13416 Bacterial extracellular solute-binding protein PF00543 Nitrogen regulatory protein P-II PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF06062 Uncharacterised protein family (UPF0231) PF05651 Putative sugar diacid recognition PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF02447 GntP family permease PF02595 Glycerate kinase family PF00330 Aconitase family (aconitate hydratase) PF06434 Aconitate hydratase 2 N-terminus PF11791 Aconitate B N-terminal domain PF01734 Patatin-like phospholipase PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF14814 Bifunctional transglycosylase second domain PF03749 Sugar fermentation stimulation protein RE domain PF17746 SfsA N-terminal OB domain PF01258 Prokaryotic dksA/traR C4-type zinc finger PF00749 tRNA synthetases class I (E and Q), catalytic domain PF01743 Poly A polymerase head domain PF12626 Polymerase A arginine-rich C-terminus PF12627 Probable RNA and SrmB- binding site of polymerase A PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF02548 Ketopantoate hydroxymethyltransferase PF02569 Pantoate-beta-alanine ligase PF01061 ABC-2 type transporter PF00005 ABC transporter PF01740 STAS domain PF00916 Sulfate permease family PF00484 Carbonic anhydrase PF00156 Phosphoribosyl transferase domain PF00440 Bacterial regulatory proteins, tetR family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF17831 Pyruvate dehydrogenase E1 component middle domain PF00456 Transketolase, thiamine diphosphate binding domain PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF01510 N-acetylmuramoyl-L-alanine amidase PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF07963 Prokaryotic N-terminal methylation motif PF00114 Pilin (bacterial filament) PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF00482 Type II secretion system (T2SS), protein F PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF01121 Dephospho-CoA kinase PF07072 Cell division protein PF03884 DNA gyrase inhibitor YacG PF01245 Ribosomal protein L19 PF01746 tRNA (Guanine-1)-methyltransferase PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF00886 Ribosomal protein S16 PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF01578 Cytochrome C assembly protein PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF02664 S-Ribosylhomocysteinase (LuxS) PF04262 Glutamate-cysteine ligase PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF09335 SNARE associated Golgi protein PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit PF00364 Biotin-requiring enzyme PF00682 HMGL-like PF02436 Conserved carboxylase domain PF04277 Oxaloacetate decarboxylase, gamma chain PF09186 Domain of unknown function (DUF1949) PF01205 Uncharacterized protein family UPF0029 PF02599 Global regulator protein family PF00696 Amino acid kinase family PF01842 ACT domain PF13840 ACT domain PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF02631 RecX family PF00154 recA bacterial DNA recombination protein PF02464 Competence-damaged protein PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF06114 IrrE N-terminal-like domain PF01476 LysM domain PF01551 Peptidase family M23 PF01975 Survival protein SurE PF01142 tRNA pseudouridine synthase D (TruD) PF02542 YgbB family PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF04977 Septum formation initiator PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF03819 MazG nucleotide pyrophosphohydrolase domain PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF01648 4'-phosphopantetheinyl transferase superfamily PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF02565 Recombination protein O C terminal PF11967 Recombination protein O N terminal PF07650 KH domain PF01926 50S ribosome-binding GTPase PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF10502 Signal peptidase, peptidase S26 PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF03888 MucB/RseB N-terminal domain PF17188 MucB/RseB C-terminal domain PF03873 Anti sigma-E protein RseA, C-terminal domain PF03872 Anti sigma-E protein RseA, N-terminal domain PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF03937 Flavinator of succinate dehydrogenase PF01571 Aminomethyltransferase folate-binding domain PF01494 FAD binding domain PF01494 FAD binding domain PF03695 Uncharacterised protein family (UPF0149) PF05164 Cell division protein ZapA PF01812 5-formyltetrahydrofolate cyclo-ligase family PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01842 ACT domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01810 LysE type translocator PF00924 Mechanosensitive ion channel PF05552 Conserved TM helix PF01116 Fructose-bisphosphate aldolase class-II PF00162 Phosphoglycerate kinase PF08340 Domain of unknown function (DUF1732) PF03755 YicC-like family, N-terminal region PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF10263 SprT-like family PF17283 SprT-like zinc ribbon domain PF04231 Endonuclease I PF04452 RNA methyltransferase PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF02622 Uncharacterized ACR, COG1678 PF03652 Holliday junction resolvase PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF01168 Alanine racemase, N-terminal domain PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF02325 YGGT family PF02594 Uncharacterised ACR, YggU family COG1872 PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF01725 Ham1 family PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF04960 Glutaminase PF02390 Putative methyltransferase PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF14815 NUDIX domain PF04362 Bacterial Fe(2+) trafficking PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain PF01464 Transglycosylase SLT domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF08447 PAS fold PF13426 PAS domain PF00825 Ribonuclease P PF02386 Cation transport protein PF00156 Phosphoribosyl transferase domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF03279 Bacterial lipid A biosynthesis acyltransferase PF00356 Bacterial regulatory proteins, lacI family PF04794 YdjC-like protein PF02056 Family 4 glycosyl hydrolase PF11975 Family 4 glycosyl hydrolase C-terminal domain PF02056 Family 4 glycosyl hydrolase PF11975 Family 4 glycosyl hydrolase C-terminal domain PF02255 PTS system, Lactose/Cellobiose specific IIA subunit PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF01522 Polysaccharide deacetylase PF00440 Bacterial regulatory proteins, tetR family PF03739 Lipopolysaccharide export system permease LptF/LptG PF03739 Lipopolysaccharide export system permease LptF/LptG PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF04364 DNA polymerase III chi subunit, HolC PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF05987 Bacterial protein of unknown function (DUF898) PF00583 Acetyltransferase (GNAT) family PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF06877 Regulator of ribonuclease activity B PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain PF01042 Endoribonuclease L-PSP PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00849 RNA pseudouridylate synthase PF00271 Helicase conserved C-terminal domain PF12137 RNA polymerase recycling family C-terminal PF00176 SNF2 family N-terminal domain PF18339 RapA N-terminal Tudor like domain 1 PF18337 RapA N-terminal Tudor like domain PF02562 PhoH-like protein PF13638 PIN domain PF01523 Putative modulator of DNA gyrase PF00795 Carbon-nitrogen hydrolase PF13502 AsmA-like C-terminal region PF13116 Protein of unknown function PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF02545 Maf-like protein PF04093 rod shape-determining protein MreD PF04085 rod shape-determining protein MreC PF04002 RadC-like JAB domain PF00482 Type II secretion system (T2SS), protein F PF00830 Ribosomal L28 family PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF13401 AAA domain PF01471 Putative peptidoglycan binding domain PF13401 AAA domain PF01471 Putative peptidoglycan binding domain PF11741 AMIN domain PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF07660 Secretin and TonB N terminus short domain PF11741 AMIN domain PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF07660 Secretin and TonB N terminus short domain PF00563 EAL domain PF17157 Gammaproteobacterial periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF00436 Single-strand binding protein family PF00471 Ribosomal protein L33 PF00196 Bacterial regulatory proteins, luxR family PF00196 Bacterial regulatory proteins, luxR family PF00196 Bacterial regulatory proteins, luxR family PF00483 Nucleotidyl transferase PF00483 Nucleotidyl transferase PF00005 ABC transporter PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF00266 Aminotransferase class-V PF00696 Amino acid kinase family PF01842 ACT domain PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF00999 Sodium/hydrogen exchanger family PF01507 Phosphoadenosine phosphosulfate reductase family PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF00667 FAD binding domain PF00258 Flavodoxin PF00175 Oxidoreductase NAD-binding domain PF01207 Dihydrouridine synthase (Dus) PF01475 Ferric uptake regulator family PF00342 Phosphoglucose isomerase PF01894 Uncharacterised protein family UPF0047 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01084 Ribosomal protein S18 PF00436 Single-strand binding protein family PF01250 Ribosomal protein S6 PF00834 Ribulose-phosphate 3 epimerase family PF02086 D12 class N6 adenine-specific DNA methyltransferase PF01761 3-dehydroquinate synthase PF01202 Shikimate kinase PF17092 Penicillin-binding protein OB-like domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00583 Acetyltransferase (GNAT) family PF14698 Argininosuccinate lyase C-terminal PF00206 Lyase PF00764 Arginosuccinate synthase PF00696 Amino acid kinase family PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00311 Phosphoenolpyruvate carboxylase PF02219 Methylenetetrahydrofolate reductase PF01467 Cytidylyltransferase-like PF00696 Amino acid kinase family PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF01053 Cys/Met metabolism PLP-dependent enzyme PF01340 Met Apo-repressor, MetJ PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF01197 Ribosomal protein L31 PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF00356 Bacterial regulatory proteins, lacI family PF00227 Proteasome subunit PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF01075 Glycosyltransferase family 9 (heptosyltransferase) PF01040 UbiA prenyltransferase family PF03737 Aldolase/RraA PF06005 Cell division protein ZapB PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF00121 Triosephosphate isomerase PF00535 Glycosyl transferase family 2 PF16363 GDP-mannose 4,6 dehydratase PF16363 GDP-mannose 4,6 dehydratase PF00210 Ferritin-like domain PF04324 BFD-like [2Fe-2S] binding domain PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00177 Ribosomal protein S7p/S5e PF00164 Ribosomal protein S12/S23 PF04077 DsrH like protein PF02635 DsrE/DsrF-like family PF02635 DsrE/DsrF-like family PF01075 Glycosyltransferase family 9 (heptosyltransferase) PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF04102 SlyX PF01112 Asparaginase PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF02525 Flavodoxin-like fold PF00005 ABC transporter PF12848 ABC transporter PF01219 Prokaryotic diacylglycerol kinase PF01219 Prokaryotic diacylglycerol kinase PF00561 alpha/beta hydrolase fold PF06794 Uncharacterised protein family (UPF0270) PF00485 Phosphoribulokinase / Uridine kinase family PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF00171 Aldehyde dehydrogenase family PF04958 Arginine N-succinyltransferase beta subunit PF00202 Aminotransferase class-III PF00117 Glutamine amidotransferase class-I PF00579 tRNA synthetases class I (W and Y) PF13419 Haloacid dehalogenase-like hydrolase PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF17876 Cold shock domain PF08461 Ribonuclease R winged-helix domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF01979 Amidohydrolase family PF02082 Transcriptional regulator PF00970 Oxidoreductase FAD-binding domain PF00042 Globin PF00175 Oxidoreductase NAD-binding domain PF12724 Flavodoxin domain PF08238 Sel1 repeat PF00709 Adenylosuccinate synthetase PF09838 Uncharacterized protein conserved in bacteria (DUF2065) PF01145 SPFH domain / Band 7 family PF01145 SPFH domain / Band 7 family PF12221 Bacterial membrane protein N terminal PF16360 GTP-binding GTPase Middle Region PF13167 GTP-binding GTPase N-terminal PF01926 50S ribosome-binding GTPase PF17209 Hfq protein PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF01520 N-acetylmuramoyl-L-alanine amidase PF00535 Glycosyl transferase family 2 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF08331 Domain of unknown function (DUF1730) PF16363 GDP-mannose 4,6 dehydratase PF00929 Exonuclease PF03193 RsgA GTPase PF02666 Phosphatidylserine decarboxylase PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF01676 Metalloenzyme superfamily PF00483 Nucleotidyl transferase PF00581 Rhodanese-like domain PF02556 Preprotein translocase subunit SecB PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF00132 Bacterial transferase hexapeptide (six repeats) PF06426 Serine acetyltransferase, N-terminal PF01551 Peptidase family M23 PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF08360 QacR-like protein, C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF04321 RmlD substrate binding domain PF00152 tRNA synthetases class II (D, K and N) PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF13085 2Fe-2S iron-sulfur cluster binding domain PF13183 4Fe-4S dicluster domain PF02300 Fumarate reductase subunit C PF02313 Fumarate reductase subunit D PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF04055 Radical SAM superfamily PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF02308 MgtC family PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF01554 MatE PF00365 Phosphofructokinase PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF07813 LTXXQ motif family protein PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF16527 Two-component sensor protein CpxA, periplasmic domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF16527 Two-component sensor protein CpxA, periplasmic domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF00588 SpoU rRNA Methylase family PF04186 FxsA cytoplasmic membrane protein PF10415 Fumarase C C-terminus PF00206 Lyase PF03605 Anaerobic c4-dicarboxylate membrane transporter PF11412 Disulphide bond corrector protein DsbC PF02683 Cytochrome C biogenesis protein transmembrane region PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF01914 MarC family integral membrane protein PF00474 Sodium:solute symporter family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF12832 MFS_1 like family PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF01220 Dehydroquinase class II PF00364 Biotin-requiring enzyme PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF01207 Dihydrouridine synthase (Dus) PF02954 Bacterial regulatory protein, Fis family PF13411 MerR HTH family regulatory protein PF01757 Acyltransferase family PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF00216 Bacterial DNA-binding protein PF00571 CBS domain PF01595 Cyclin M transmembrane N-terminal domain PF04222 Protein of unknown function (DUF416) PF03167 Uracil DNA glycosylase superfamily PF01208 Uroporphyrinogen decarboxylase (URO-D) PF00293 NUDIX domain PF09297 NADH pyrophosphatase zinc ribbon domain PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF00466 Ribosomal protein L10 PF02719 Polysaccharide biosynthesis protein PF02719 Polysaccharide biosynthesis protein PF00687 Ribosomal protein L1p/L10e family PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00467 KOW motif PF02357 Transcription termination factor nusG PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00485 Phosphoribulokinase / Uridine kinase family PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF08279 HTH domain PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF13091 PLD-like domain PF02350 UDP-N-acetylglucosamine 2-epimerase PF00175 Oxidoreductase NAD-binding domain PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF03102 NeuB family PF08666 SAF domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF07498 Rho termination factor, N-terminal domain PF07497 Rho termination factor, RNA-binding domain PF00085 Thioredoxin PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF02541 Ppx/GppA phosphatase family PF02592 Putative vitamin uptake transporter PF00892 EamA-like transporter family PF01810 LysE type translocator PF01810 LysE type translocator PF00132 Bacterial transferase hexapeptide (six repeats) PF12464 Maltose acetyltransferase PF00132 Bacterial transferase hexapeptide (six repeats) PF12464 Maltose acetyltransferase PF00132 Bacterial transferase hexapeptide (six repeats) PF12464 Maltose acetyltransferase PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF05114 Protein of unknown function (DUF692) PF07690 Major Facilitator Superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00483 Nucleotidyl transferase PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF05690 Thiazole biosynthesis protein ThiG PF00899 ThiF family PF02581 Thiamine monophosphate synthase PF13667 ThiC-associated domain PF01964 Radical SAM ThiC family PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF00394 Multicopper oxidase PF07731 Multicopper oxidase PF07732 Multicopper oxidase PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00132 Bacterial transferase hexapeptide (six repeats) PF07369 Protein of unknown function (DUF1488) PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF08501 Shikimate dehydrogenase substrate binding domain PF02348 Cytidylyltransferase PF01218 Coproporphyrinogen III oxidase PF01300 Telomere recombination PF00731 AIR carboxylase PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF01396 Topoisomerase DNA binding C4 zinc finger PF04361 Protein of unknown function (DUF494) PF02481 DNA recombination-mediator protein A PF17782 DprA winged helix domain PF01327 Polypeptide deformylase PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF02080 TrkA-C domain PF02254 TrkA-N domain PF02386 Cation transport protein PF03006 Haemolysin-III related PF06288 Protein of unknown function (DUF1040) PF13746 4Fe-4S dicluster domain PF12801 4Fe-4S binding domain PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase PF01636 Phosphotransferase enzyme family PF00117 Glutamine amidotransferase class-I PF01323 DSBA-like thioredoxin domain PF01323 DSBA-like thioredoxin domain PF01553 Acyltransferase PF01078 Magnesium chelatase, subunit ChlI PF13335 Magnesium chelatase, subunit ChlI C-terminal PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF01063 Amino-transferase class IV PF00920 Dehydratase family PF00291 Pyridoxal-phosphate dependent enzyme PF00585 C-terminal regulatory domain of Threonine dehydratase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00977 Histidine biosynthesis protein PF07690 Major Facilitator Superfamily PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00528 Binding-protein-dependent transport system inner membrane component PF00132 Bacterial transferase hexapeptide (six repeats) PF12804 MobA-like NTP transferase domain PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00231 ATP synthase PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00213 ATP synthase delta (OSCP) subunit PF00430 ATP synthase B/B' CF(0) PF00137 ATP synthase subunit C PF00119 ATP synthase A chain PF03899 ATP synthase I chain PF17762 HTH domain found in ParB protein PF02195 ParB-like nuclease domain PF13614 AAA domain PF02527 rRNA small subunit methyltransferase G PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF01075 Glycosyltransferase family 9 (heptosyltransferase) PF03279 Bacterial lipid A biosynthesis acyltransferase PF01370 NAD dependent epimerase/dehydratase family PF06082 Exopolysaccharide biosynthesis protein YbjH PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF PF01451 Low molecular weight phosphotyrosine protein phosphatase PF13614 AAA domain PF13807 G-rich domain on putative tyrosine kinase PF02706 Chain length determinant protein PF02350 UDP-N-acetylglucosamine 2-epimerase PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF00534 Glycosyl transferases group 1 PF16363 GDP-mannose 4,6 dehydratase PF01370 NAD dependent epimerase/dehydratase family PF00293 NUDIX domain PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00117 Glutamine amidotransferase class-I PF00977 Histidine biosynthesis protein PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF02397 Bacterial sugar transferase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF00665 Integrase core domain PF00665 Integrase core domain PF01695 IstB-like ATP binding protein PF10996 Beta-Casp domain PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF00468 Ribosomal protein L34 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF00338 Ribosomal protein S10p/S20e PF00297 Ribosomal protein L3 PF00573 Ribosomal protein L4/L1 family PF00276 Ribosomal protein L23 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00203 Ribosomal protein S19 PF00237 Ribosomal protein L22p/L17e PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF04380 Membrane fusogenic activity PF00252 Ribosomal protein L16p/L10e PF00831 Ribosomal L29 protein PF00366 Ribosomal protein S17 PF00238 Ribosomal protein L14p/L23e PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00253 Ribosomal protein S14p/S29e PF00410 Ribosomal protein S8 PF00347 Ribosomal protein L6 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF00327 Ribosomal protein L30p/L7e PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00344 SecY translocase PF00416 Ribosomal protein S13/S18 PF00411 Ribosomal protein S11 PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF01196 Ribosomal protein L17 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF04225 Opacity-associated protein A LysM-like domain PF08525 Opacity-associated protein A N-terminal motif PF13673 Acetyltransferase (GNAT) domain PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00440 Bacterial regulatory proteins, tetR family PF01507 Phosphoadenosine phosphosulfate reductase family PF00009 Elongation factor Tu GTP binding domain PF03600 Citrate transporter PF02080 TrkA-C domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF09695 Bacterial protein of unknown function (YtfJ_HI0045) PF01625 Peptide methionine sulfoxide reductase PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF17243 POTRA domain TamA domain 1 PF04357 TamB, inner membrane protein subunit of TAM complex PF06094 Gamma-glutamyl cyclotransferase, AIG2-like PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00719 Inorganic pyrophosphatase PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02441 Flavoprotein PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF04751 Protein of unknown function (DUF615) PF01523 Putative modulator of DNA gyrase PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00381 PTS HPr component phosphorylation site PF03668 P-loop ATPase protein family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF00309 Sigma-54 factor, Activator interacting domain (AID) PF04963 Sigma-54 factor, core binding domain PF04552 Sigma-54, DNA binding domain PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF03968 OstA-like protein PF00571 CBS domain PF01380 SIS domain PF01699 Sodium/calcium exchanger protein PF01699 Sodium/calcium exchanger protein PF00005 ABC transporter PF02405 Permease MlaE PF02470 MlaD protein PF05494 MlaC protein PF01722 BolA-like protein PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00582 Universal stress protein family PF16868 NMT1-like family PF01316 Arginine repressor, DNA binding domain PF02863 Arginine repressor, C-terminal domain PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF00348 Polyprenyl synthetase PF00829 Ribosomal prokaryotic L21 protein PF00005 ABC transporter PF01016 Ribosomal L27 protein PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF06738 Putative threonine/serine exporter PF12821 Threonine/Serine exporter, ThrE PF00186 Dihydrofolate reductase PF00149 Calcineurin-like phosphoesterase PF04379 ApaG domain PF00398 Ribosomal RNA adenine dimethylase PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF00639 PPIC-type PPIASE domain PF09312 SurA N-terminal domain PF04453 LPS transport system D PF03968 OstA-like protein PF00226 DnaJ domain PF05099 Tellurite resistance protein TerB PF00694 Aconitase C-terminal domain PF00330 Aconitase family (aconitate hydratase) PF00180 Isocitrate/isopropylmalate dehydrogenase PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF01569 PAP2 superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00501 AMP-binding enzyme PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF10369 Small subunit of acetolactate synthase PF07694 5TMR of 5TMR-LYT PF00990 Diguanylate cyclase, GGDEF domain PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF01380 SIS domain PF05068 Mannitol repressor PF01232 Mannitol dehydrogenase Rossmann domain PF08125 Mannitol dehydrogenase C-terminal domain PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00075 RNase H PF00528 Binding-protein-dependent transport system inner membrane component PF04002 RadC-like JAB domain PF04002 RadC-like JAB domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF01791 DeoC/LacD family aldolase PF00294 pfkB family carbohydrate kinase PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF07690 Major Facilitator Superfamily PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF02278 Polysaccharide lyase family 8, super-sandwich domain PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain PF02278 Polysaccharide lyase family 8, super-sandwich domain PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain PF03830 PTS system sorbose subfamily IIB component PF03830 PTS system sorbose subfamily IIB component PF03609 PTS system sorbose-specific iic component PF03613 PTS system mannose/fructose/sorbose family IID component PF03613 PTS system mannose/fructose/sorbose family IID component PF03610 PTS system fructose IIA component PF03830 PTS system sorbose subfamily IIB component PF07470 Glycosyl Hydrolase Family 88 PF03050 Transposase IS66 family PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF10688 Bacterial inner membrane protein PF10688 Bacterial inner membrane protein PF10688 Bacterial inner membrane protein PF00294 pfkB family carbohydrate kinase PF01081 KDPG and KHG aldolase PF01081 KDPG and KHG aldolase PF01081 KDPG and KHG aldolase PF01081 KDPG and KHG aldolase PF01609 Transposase DDE domain PF02281 Transposase Tn5 dimerisation domain PF14706 Transposase DNA-binding PF12759 InsA C-terminal domain PF03811 InsA N-terminal domain PF03400 IS1 transposase PF04546 Sigma-70, non-essential region PF03979 Sigma-70 factor, region 1.1 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF10410 DnaB-helicase binding domain of primase PF08278 DNA primase DnaG DnaB-binding PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF09424 Yqey-like protein PF01165 Ribosomal protein S21 PF00814 Glycoprotease family PF12697 Alpha/beta hydrolase family PF00528 Binding-protein-dependent transport system inner membrane component PF02660 Glycerol-3-phosphate acyltransferase PF02152 Dihydroneopterin aldolase PF02673 Bacitracin resistance protein BacA PF01966 HD domain PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF08239 Bacterial SH3 domain PF01384 Phosphate transporter family PF01865 Protein of unknown function DUF47 PF01928 CYTH domain PF07885 Ion channel PF08335 GlnD PII-uridylyltransferase PF03710 Glutamate-ammonia ligase adenylyltransferase PF01467 Cytidylyltransferase-like PF00294 pfkB family carbohydrate kinase PF02321 Outer membrane efflux protein PF00293 NUDIX domain PF06853 Protein of unknown function (DUF1249) PF00149 Calcineurin-like phosphoesterase PF05728 Uncharacterised protein family (UPF0227) PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF13180 PDZ domain PF00595 PDZ domain PF06295 Protein of unknown function (DUF1043) PF03969 AFG1-like ATPase PF00572 Ribosomal protein L13 PF00380 Ribosomal protein S9/S16 PF00355 Rieske [2Fe-2S] domain PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PF00032 Cytochrome b(C-terminal)/b6/petD PF00033 Cytochrome b/b6/petB PF02167 Cytochrome C1 family PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF04386 Stringent starvation protein B PF04972 BON domain PF13580 SIS domain PF02021 Uncharacterised protein family UPF0102 PF04348 LppC putative lipoprotein PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF03793 PASTA domain PF00069 Protein kinase domain PF01795 MraW methylase family PF04999 Cell division protein FtsL PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01098 Cell cycle protein PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF03799 Cell division protein FtsQ PF08478 POTRA domain, FtsQ-type PF02491 SHS2 domain inserted in FTSA PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF02810 SEC-C motif PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF00293 NUDIX domain PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF00072 Response regulator receiver domain PF08291 Peptidase M15 PF01471 Putative peptidoglycan binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF03458 UPF0126 domain PF01497 Periplasmic binding protein PF17113 Regulatory signalling modulator protein AmpE PF03186 CobD/Cbib protein PF01048 Phosphorylase superfamily PF00356 Bacterial regulatory proteins, lacI family PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF04055 Radical SAM superfamily PF16199 Radical_SAM C-terminal domain PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF18415 Histidine kinase receptor ArcB trans-membrane domain PF01627 Hpt domain PF00989 PAS fold PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF03737 Aldolase/RraA PF00696 Amino acid kinase family PF01842 ACT domain PF13840 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF00291 Pyridoxal-phosphate dependent enzyme PF14821 Threonine synthase N terminus PF01228 Glycine radical PF01261 Xylose isomerase-like TIM barrel PF03167 Uracil DNA glycosylase superfamily PF00920 Dehydratase family PF01235 Sodium:alanine symporter family PF03883 Peroxide stress protein YaaA PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF05175 Methyltransferase small domain PF05525 Branched-chain amino acid transport protein PF00258 Flavodoxin PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF00497 Bacterial extracellular solute-binding proteins, family 3 PF01202 Shikimate kinase PF10411 Disulfide bond isomerase protein N-terminus PF13098 Thioredoxin-like domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF03462 PCRF domain PF00472 RF-1 domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF02830 V4R domain PF06505 Activator of aromatic catabolism PF00248 Aldo/keto reductase family PF02976 DNA mismatch repair enzyme MutH PF00293 NUDIX domain PF02447 GntP family permease PF01590 GAF domain PF05524 PEP-utilising enzyme, N-terminal PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01925 Sulfite exporter TauE/SafE PF01790 Prolipoprotein diacylglyceryl transferase PF00303 Thymidylate synthase PF02690 Na+/Pi-cotransporter PF02690 Na+/Pi-cotransporter PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01022 Bacterial regulatory protein, arsR family PF01649 Ribosomal protein S20 PF03023 Lipid II flippase MurJ PF06574 FAD synthetase PF01687 Riboflavin kinase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF06827 Zinc finger found in FPG and IleRS PF01252 Signal peptidase (SPase) II PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF02401 LytB protein PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF07694 5TMR of 5TMR-LYT PF06580 Histidine kinase PF02554 Carbon starvation protein CstA PF03702 Anhydro-N-acetylmuramic acid kinase PF00933 Glycosyl hydrolase family 3 N terminal domain PF00793 DAHP synthetase I family PF01817 Chorismate mutase type II PF02153 Prephenate dehydrogenase PF07238 PilZ domain PF00005 ABC transporter PF12848 ABC transporter PF01464 Transglycosylase SLT domain PF14718 Soluble lytic murein transglycosylase L domain PF01371 Trp repressor protein PF01931 Protein of unknown function DUF84 PF01817 Chorismate mutase type II PF00800 Prephenate dehydratase PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF13525 Outer membrane lipoprotein PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF02578 Multi-copper polyphenol oxidoreductase laccase PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF03411 Penicillin-insensitive murein endopeptidase PF00037 4Fe-4S binding domain PF01136 Peptidase family U32 PF16325 Peptidase family U32 C-terminal domain PF04381 Putative exonuclease, RdgC PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF11808 Phosphate regulon sensor protein PhoR PF12849 PBP superfamily domain PF12849 PBP superfamily domain PF02541 Ppx/GppA phosphatase family PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF01432 Peptidase family M3 PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF01895 PhoU domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF03976 Polyphosphate kinase 2 (PPK2) PF03932 CutC family PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01274 Malate synthase PF00463 Isocitrate lyase family PF00571 CBS domain PF02547 Queuosine biosynthesis protein PF01702 Queuine tRNA-ribosyltransferase PF02699 Preprotein translocase subunit PF01037 Lrp/AsnC ligand binding domain PF07549 SecD/SecF GG Motif PF13721 SecD export protein N-terminal TM region PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF00459 Inositol monophosphatase family PF00588 SpoU rRNA Methylase family PF02082 Transcriptional regulator PF00266 Aminotransferase class-V PF01592 NifU-like N terminal domain PF01521 Iron-sulphur cluster biosynthesis PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00226 DnaJ domain PF07743 HSCB C-terminal oligomerisation domain PF00012 Hsp70 protein PF00111 2Fe-2S iron-sulfur cluster binding domain PF04384 Iron-sulphur cluster assembly PF12404 Peptidase PF00883 Cytosol aminopeptidase family, catalytic domain PF00334 Nucleoside diphosphate kinase PF04055 Radical SAM superfamily PF13464 Domain of unknown function (DUF4115) PF04551 GcpE protein PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF04445 Putative SAM-dependent methyltransferase PF09976 Tetratricopeptide repeat-like domain PF13360 PQQ-like domain PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF13185 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF02601 Exonuclease VII, large subunit PF13742 OB-fold nucleic acid binding domain PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF06483 Chitinase C PF00704 Glycosyl hydrolases family 18 PF06483 Chitinase C PF00704 Glycosyl hydrolases family 18 PF06483 Chitinase C PF00704 Glycosyl hydrolases family 18 PF01184 GPR1/FUN34/yaaH family PF01235 Sodium:alanine symporter family PF01266 FAD dependent oxidoreductase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07885 Ion channel PF02028 BCCT, betaine/carnitine/choline family transporter PF00892 EamA-like transporter family PF03481 Putative GTP-binding controlling metal-binding PF01300 Telomere recombination PF00582 Universal stress protein family PF00210 Ferritin-like domain PF12008 Type I restriction and modification enzyme - subunit R C terminal PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF12161 HsdM N-terminal domain PF02384 N-6 DNA Methylase PF10625 Universal stress protein B (UspB) PF01668 SmpB protein PF03364 Polyketide cyclase / dehydrase and lipid transport PF03658 RnfH family Ubiquitin PF04355 SmpA / OmlA family PF02463 RecF/RecN/SMC N terminal domain PF02463 RecF/RecN/SMC N terminal domain PF01513 ATP-NAD kinase PF01025 GrpE PF00375 Sodium:dicarboxylate symporter family PF00012 Hsp70 protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF07963 Prokaryotic N-terminal methylation motif PF00114 Pilin (bacterial filament) PF00756 Putative esterase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF14437 MafB19-like deaminase PF00497 Bacterial extracellular solute-binding proteins, family 3 PF01464 Transglycosylase SLT domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00860 Permease family PF00860 Permease family PF00156 Phosphoribosyl transferase domain PF06500 Alpha/beta hydrolase of unknown function (DUF1100) PF07417 Sigma factor-binding transcriptional regulator Crl PF02602 Uroporphyrinogen-III synthase HemD PF00696 Amino acid kinase family PF01472 PUA domain PF00171 Aldehyde dehydrogenase family PF03477 ATP cone domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF00677 Lumazine binding domain PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00885 6,7-dimethyl-8-ribityllumazine synthase PF01029 NusB family PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF04608 Phosphatidylglycerophosphatase A PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00348 Polyprenyl synthetase PF02609 Exonuclease VII small subunit PF01618 MotA/TolQ/ExbB proton channel family PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF02568 Thiamine biosynthesis protein (ThiI) PF02926 THUMP domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF04241 Protein of unknown function (DUF423) PF01728 FtsJ-like methyltransferase PF18125 RlmM ferredoxin-like domain PF01223 DNA/RNA non-specific endonuclease PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF11892 Domain of unknown function (DUF3412) PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases PF03641 Possible lysine decarboxylase PF00990 Diguanylate cyclase, GGDEF domain PF14489 QueF-like protein PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF12633 Adenylate cyclase NT domain PF01295 Adenylate cyclase, class-I PF07348 Syd protein (SUKH-2) PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) PF03180 NLPA lipoprotein PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF09383 NIL domain PF00356 Bacterial regulatory proteins, lacI family PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF01491 Frataxin-like domain PF00464 Serine hydroxymethyltransferase PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF03099 Biotin/lipoate A/B protein ligase family PF04359 Protein of unknown function (DUF493) PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF03330 Lytic transglycolase PF05036 Sporulation related domain PF01098 Cell cycle protein PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF02590 Predicted SPOUT methyltransferase PF14840 Processivity clamp loader gamma complex DNA pol III C-term PF06144 DNA polymerase III, delta subunit PF04390 Lipopolysaccharide-assembly PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF07295 Zinc-ribbon containing domain PF00795 Carbon-nitrogen hydrolase PF00571 CBS domain PF03471 Transporter associated domain PF02130 Uncharacterized protein family UPF0054 PF02562 PhoH-like protein PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF01494 FAD binding domain PF01678 Diaminopimelate epimerase PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF01195 Peptidyl-tRNA hydrolase PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF03550 Outer membrane lipoprotein LolB PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF03462 PCRF domain PF00472 RF-1 domain PF13847 Methyltransferase domain PF17827 PrmC N-terminal domain PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF04247 Invasion gene expression up-regulator, SirB PF13369 Transglutaminase-like superfamily PF00793 DAHP synthetase I family PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF04073 Aminoacyl-tRNA editing domain PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF01713 Smr domain PF01963 TraB family PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00925 GTP cyclohydrolase II PF08719 Domain of unknown function (DUF1768) PF01709 Transcriptional regulator PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF07694 5TMR of 5TMR-LYT PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17200 Single Cache domain 2 PF03616 Sodium/glutamate symporter PF03616 Sodium/glutamate symporter PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF06029 AlkA N-terminal domain PF00730 HhH-GPD superfamily base excision DNA repair protein PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PF03600 Citrate transporter PF08361 MAATS-type transcriptional repressor, C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF08329 Chitinase A, N-terminal domain PF00704 Glycosyl hydrolases family 18 PF08329 Chitinase A, N-terminal domain PF00704 Glycosyl hydrolases family 18 PF08329 Chitinase A, N-terminal domain PF00704 Glycosyl hydrolases family 18 PF06865 Pyrimidine/purine nucleoside phosphorylase PF02678 Pirin PF05726 Pirin C-terminal cupin domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF02264 LamB porin PF07148 Maltose operon periplasmic protein precursor (MalM) PF01547 Bacterial extracellular solute-binding protein PF01547 Bacterial extracellular solute-binding protein PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF16657 Maltogenic Amylase, C-terminal domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF11852 Domain of unknown function (DUF3372) PF03714 Bacterial pullanase-associated domain PF18494 Pullulanase Ins domain PF17967 Pullulanase N2 domain PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain PF13520 Amino acid permease PF08543 Phosphomethylpyrimidine kinase PF00375 Sodium:dicarboxylate symporter family PF03193 RsgA GTPase PF04314 Copper chaperone PCu(A)C PF02630 SCO1/SenC PF00196 Bacterial regulatory proteins, luxR family PF17874 MalT-like TPR region PF00343 Carbohydrate phosphorylase PF02446 4-alpha-glucanotransferase PF00128 Alpha amylase, catalytic domain PF02806 Alpha amylase, C-terminal all-beta domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF00672 HAMP domain PF16591 Helical bimodular sensor domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01810 LysE type translocator PF01037 Lrp/AsnC ligand binding domain PF01037 Lrp/AsnC ligand binding domain PF01037 Lrp/AsnC ligand binding domain PF01470 Pyroglutamyl peptidase PF00171 Aldehyde dehydrogenase family PF02798 Glutathione S-transferase, N-terminal domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF00356 Bacterial regulatory proteins, lacI family PF00474 Sodium:solute symporter family PF03313 Serine dehydratase alpha chain PF03315 Serine dehydratase beta chain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01699 Sodium/calcium exchanger protein PF09335 SNARE associated Golgi protein PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00501 AMP-binding enzyme PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF02264 LamB porin PF00356 Bacterial regulatory proteins, lacI family PF00356 Bacterial regulatory proteins, lacI family PF00356 Bacterial regulatory proteins, lacI family PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00232 Glycosyl hydrolase family 1 PF00005 ABC transporter PF08402 TOBE domain PF00356 Bacterial regulatory proteins, lacI family PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00722 Glycosyl hydrolases family 16 PF02264 LamB porin PF12833 Helix-turn-helix domain PF12833 Helix-turn-helix domain PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF01554 MatE PF00849 RNA pseudouridylate synthase PF00873 AcrB/AcrD/AcrF family PF02653 Branched-chain amino acid transport system / permease component PF00005 ABC transporter PF13407 Periplasmic binding protein domain PF02929 Beta galactosidase small chain PF16353 Domain of unknown function(DUF4981) PF00703 Glycosyl hydrolases family 2 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PF02837 Glycosyl hydrolases family 2, sugar binding domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF11953 Domain of unknown function (DUF3470) PF00037 4Fe-4S binding domain PF01590 GAF domain PF00158 Sigma-54 interaction domain PF00258 Flavodoxin PF00753 Metallo-beta-lactamase superfamily PF00301 Rubredoxin PF07992 Pyridine nucleotide-disulphide oxidoreductase PF18113 Rubredoxin binding C-terminal domain PF01238 Phosphomannose isomerase type I PF01238 Phosphomannose isomerase type I PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF12833 Helix-turn-helix domain PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF12838 4Fe-4S dicluster domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01048 Phosphorylase superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01752 Collagenase PF08453 Peptidase family M9 N-terminal PF04151 Bacterial pre-peptidase C-terminal domain PF01752 Collagenase PF08453 Peptidase family M9 N-terminal PF04151 Bacterial pre-peptidase C-terminal domain PF04973 Nicotinamide mononucleotide transporter PF01048 Phosphorylase superfamily PF00764 Arginosuccinate synthase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00375 Sodium:dicarboxylate symporter family PF00881 Nitroreductase family PF05958 tRNA (Uracil-5-)-methyltransferase PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF04231 Endonuclease I PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF16657 Maltogenic Amylase, C-terminal domain PF00884 Sulfatase PF08019 Phosphoethanolamine transferase EptA/EptB PF00884 Sulfatase PF08019 Phosphoethanolamine transferase EptA/EptB PF00884 Sulfatase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00106 short chain dehydrogenase PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF01569 PAP2 superfamily PF08543 Phosphomethylpyrimidine kinase PF04013 Putative SAM-dependent RNA methyltransferase PF10928 Protein of unknown function (DUF2810) PF07690 Major Facilitator Superfamily PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF13416 Bacterial extracellular solute-binding protein PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01906 Putative heavy-metal-binding PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00080 Copper/zinc superoxide dismutase (SODC) PF00199 Catalase PF06628 Catalase-related immune-responsive PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF07690 Major Facilitator Superfamily PF05922 Peptidase inhibitor I9 PF00082 Subtilase family PF00657 GDSL-like Lipase/Acylhydrolase PF00155 Aminotransferase class I and II PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF04607 Region found in RelA / SpoT proteins PF08212 Lipocalin-like domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01593 Flavin containing amine oxidoreductase PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09456 RcsC Alpha-Beta-Loop (ABL) PF00072 Response regulator receiver domain PF04076 Bacterial OB fold (BOF) protein PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00529 HlyD membrane-fusion protein of T1SS PF00529 HlyD membrane-fusion protein of T1SS PF00529 HlyD membrane-fusion protein of T1SS PF02321 Outer membrane efflux protein PF00194 Eukaryotic-type carbonic anhydrase PF00924 Mechanosensitive ion channel PF07238 PilZ domain PF12945 Flagellar protein YcgR PF13302 Acetyltransferase (GNAT) domain PF07676 WD40-like Beta Propeller Repeat PF03572 Peptidase family S41 PF14684 Tricorn protease C1 domain PF14685 Tricorn protease PDZ domain PF00005 ABC transporter PF12558 ATP-binding cassette cobalt transporter PF07155 ECF-type riboflavin transporter, S component PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF11742 Protein of unknown function (DUF3302) PF00990 Diguanylate cyclase, GGDEF domain PF01048 Phosphorylase superfamily PF08349 Protein of unknown function (DUF1722) PF13411 MerR HTH family regulatory protein PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF17969 L,D-transpeptidase C-terminal domain PF01476 LysM domain PF03734 L,D-transpeptidase catalytic domain PF00326 Prolyl oligopeptidase family PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PF07715 TonB-dependent Receptor Plug Domain PF04886 PT repeat PF00593 TonB dependent receptor PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF07584 Aerotolerance regulator N-terminal PF00092 von Willebrand factor type A domain PF01882 Protein of unknown function DUF58 PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF13614 AAA domain PF13807 G-rich domain on putative tyrosine kinase PF02706 Chain length determinant protein PF02563 Polysaccharide biosynthesis/export protein PF10531 SLBB domain PF02397 Bacterial sugar transferase PF00005 ABC transporter PF08402 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF14785 Maltose transport system permease protein MalF P2 domain PF00528 Binding-protein-dependent transport system inner membrane component PF05661 Protein of unknown function (DUF808) PF17151 Periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF01979 Amidohydrolase family PF00111 2Fe-2S iron-sulfur cluster binding domain PF03473 MOSC domain PF03476 MOSC N-terminal beta barrel domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF03473 MOSC domain PF03476 MOSC N-terminal beta barrel domain PF02540 NAD synthase PF00005 ABC transporter PF01032 FecCD transport family PF02472 Biopolymer transport protein ExbD/TolR PF01618 MotA/TolQ/ExbB proton channel family PF03544 Gram-negative bacterial TonB protein C-terminal PF04055 Radical SAM superfamily PF06228 Haem utilisation ChuX/HutX PF01243 Pyridoxamine 5'-phosphate oxidase PF00582 Universal stress protein family PF00128 Alpha amylase, catalytic domain PF00128 Alpha amylase, catalytic domain PF07670 Nucleoside recognition PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF13419 Haloacid dehalogenase-like hydrolase PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00990 Diguanylate cyclase, GGDEF domain PF01625 Peptide methionine sulfoxide reductase PF01641 SelR domain PF02566 OsmC-like protein PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF13419 Haloacid dehalogenase-like hydrolase PF00155 Aminotransferase class I and II PF12833 Helix-turn-helix domain PF01497 Periplasmic binding protein PF13419 Haloacid dehalogenase-like hydrolase PF00202 Aminotransferase class-III PF00266 Aminotransferase class-V PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF01266 FAD dependent oxidoreductase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00854 POT family PF03313 Serine dehydratase alpha chain PF03315 Serine dehydratase beta chain PF13977 BetI-type transcriptional repressor, C-terminal PF00440 Bacterial regulatory proteins, tetR family PF00171 Aldehyde dehydrogenase family PF05199 GMC oxidoreductase PF00732 GMC oxidoreductase PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00571 CBS domain PF04224 Protein of unknown function, DUF417 PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF03618 Kinase/pyrophosphorylase PF01266 FAD dependent oxidoreductase PF04324 BFD-like [2Fe-2S] binding domain PF00890 FAD binding domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF13419 Haloacid dehalogenase-like hydrolase PF02016 LD-carboxypeptidase N-terminal domain PF17676 LD-carboxypeptidase C-terminal domain PF07995 Glucose / Sorbosone dehydrogenase PF00012 Hsp70 protein PF00581 Rhodanese-like domain PF13533 Biotin-lipoyl like PF00873 AcrB/AcrD/AcrF family PF13194 Domain of unknown function (DUF4010) PF07504 Fungalysin/Thermolysin Propeptide Motif PF03413 Peptidase propeptide and YPEB domain PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF00149 Calcineurin-like phosphoesterase PF18416 N-acetylglucosamine binding protein domain 2 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading PF00892 EamA-like transporter family PF04266 ASCH domain PF01569 PAP2 superfamily PF03606 C4-dicarboxylate anaerobic carrier PF00034 Cytochrome c PF01212 Beta-eliminating lyase PF07728 AAA domain (dynein-related subfamily) PF17868 AAA lid domain PF12592 Protein of unknown function (DUF3763) PF05762 VWA domain containing CoxE-like protein PF04237 YjbR PF05025 RbsD / FucU transport protein family PF00005 ABC transporter PF02653 Branched-chain amino acid transport system / permease component PF13407 Periplasmic binding protein domain PF00294 pfkB family carbohydrate kinase PF00356 Bacterial regulatory proteins, lacI family PF00583 Acetyltransferase (GNAT) family PF00583 Acetyltransferase (GNAT) family PF01926 50S ribosome-binding GTPase PF08678 Rsbr N terminal PF01740 STAS domain PF13581 Histidine kinase-like ATPase domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00149 Calcineurin-like phosphoesterase PF12320 Type 5 capsule protein repressor C-terminal domain PF13476 AAA domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00939 Sodium:sulfate symporter transmembrane region PF12431 Transcriptional regulator PF00072 Response regulator receiver domain PF01032 FecCD transport family PF01032 FecCD transport family PF00005 ABC transporter PF12805 FUSC-like inner membrane protein yccS PF12462 DNA helicase IV / RNA helicase N terminal PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF02142 MGS-like domain PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PF03781 Sulfatase-modifying factor enzyme 1 PF03264 NapC/NirT cytochrome c family, N-terminal region PF09699 Doubled CXXCH motif (Paired_CXXCH_1) PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB PF03880 DbpA RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF09456 RcsC Alpha-Beta-Loop (ABL) PF00072 Response regulator receiver domain PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF00563 EAL domain PF00498 FHA domain PF00990 Diguanylate cyclase, GGDEF domain PF12849 PBP superfamily domain PF12833 Helix-turn-helix domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF03880 DbpA RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00871 Acetokinase family PF00884 Sulfatase PF00884 Sulfatase PF04055 Radical SAM superfamily PF13186 Iron-sulfur cluster-binding domain PF04055 Radical SAM superfamily PF13186 Iron-sulfur cluster-binding domain PF04055 Radical SAM superfamily PF13186 Iron-sulfur cluster-binding domain PF00092 von Willebrand factor type A domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase PF03781 Sulfatase-modifying factor enzyme 1 PF18081 Fanconi anemia-associated nuclease SAP domain PF08774 VRR-NUC domain PF07690 Major Facilitator Superfamily PF13533 Biotin-lipoyl like PF00795 Carbon-nitrogen hydrolase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF02347 Glycine cleavage system P-protein PF01597 Glycine cleavage H-protein PF00464 Serine hydroxymethyltransferase PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF00294 pfkB family carbohydrate kinase PF00381 PTS HPr component phosphorylation site PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF00356 Bacterial regulatory proteins, lacI family PF00532 Periplasmic binding proteins and sugar binding domain of LacI family PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF07690 Major Facilitator Superfamily PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF14532 Sigma-54 interaction domain PF00465 Iron-containing alcohol dehydrogenase PF06719 AraC-type transcriptional regulator N-terminus PF12833 Helix-turn-helix domain PF00483 Nucleotidyl transferase PF01268 Formate--tetrahydrofolate ligase PF11849 Domain of unknown function (DUF3369) PF11849 Domain of unknown function (DUF3369) PF13419 Haloacid dehalogenase-like hydrolase PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF04336 Acyl carrier protein phosphodiesterase PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF01292 Prokaryotic cytochrome b561 PF04264 YceI-like domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF06496 Protein of unknown function (DUF1097) PF11398 Protein of unknown function (DUF2813) PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF03741 Integral membrane protein TerC family PF00892 EamA-like transporter family PF00491 Arginase family PF12262 Bacterial virulence factor lipase N-terminal PF03061 Thioesterase superfamily PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF12793 Sugar transport-related sRNA regulator N-term PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF07055 Enoyl reductase FAD binding domain PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PF12241 Trans-2-enoyl-CoA reductase catalytic region PF13472 GDSL-like Lipase/Acylhydrolase family PF00005 ABC transporter PF01266 FAD dependent oxidoreductase PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF02626 Carboxyltransferase domain, subdomain A and B PF02682 Carboxyltransferase domain, subdomain C and D PF03746 LamB/YcsF family PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF05231 MASE1 PF08447 PAS fold PF08448 PAS fold PF13426 PAS domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00583 Acetyltransferase (GNAT) family PF13380 CoA binding domain PF13607 Succinyl-CoA ligase like flavodoxin domain PF05036 Sporulation related domain PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF01253 Translation initiation factor SUI1 PF03701 Uncharacterised protein family (UPF0181) PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02233 NAD(P) transhydrogenase beta subunit PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF01047 MarR family PF00892 EamA-like transporter family PF00005 ABC transporter PF03459 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF06147 Protein of unknown function (DUF968) PF10609 NUBPL iron-transfer P-loop NTPase PF04245 37-kD nucleoid-associated bacterial protein PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF00155 Aminotransferase class I and II PF03477 ATP cone domain PF13597 Anaerobic ribonucleoside-triphosphate reductase PF00873 AcrB/AcrD/AcrF family PF04143 Sulphur transport PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF00085 Thioredoxin PF07690 Major Facilitator Superfamily PF01554 MatE PF11756 Nitrous oxide-stimulated promoter PF03605 Anaerobic c4-dicarboxylate membrane transporter PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF13806 Rieske-like [2Fe-2S] domain PF04324 BFD-like [2Fe-2S] binding domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF18267 Rubredoxin NAD+ reductase C-terminal domain PF01575 MaoC like domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF01339 CheB methylesterase PF00491 Arginase family PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF04324 BFD-like [2Fe-2S] binding domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF13806 Rieske-like [2Fe-2S] domain PF18267 Rubredoxin NAD+ reductase C-terminal domain PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF03861 ANTAR domain PF08376 Nitrate and nitrite sensing PF01738 Dienelactone hydrolase family PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF04324 BFD-like [2Fe-2S] binding domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF07968 Leukocidin/Hemolysin toxin family PF00652 Ricin-type beta-trefoil lectin domain PF07690 Major Facilitator Superfamily PF01523 Putative modulator of DNA gyrase PF01523 Putative modulator of DNA gyrase PF07963 Prokaryotic N-terminal methylation motif PF08334 Type II secretion system (T2SS), protein G PF03606 C4-dicarboxylate anaerobic carrier PF04011 LemA family PF01435 Peptidase family M48 PF03527 RHS protein PF05593 RHS Repeat PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF10431 C-terminal, D2-small domain, of ClpB protein PF05947 Type VI secretion system, TssF PF07024 ImpE protein PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PF06761 Intracellular multiplication and human macrophage-killing PF14331 ImcF-related N-terminal domain PF06744 Type VI secretion protein IcmF C-terminal PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF03793 PASTA domain PF00069 Protein kinase domain PF12843 Putative quorum-sensing-regulated virulence factor PF01329 Pterin 4 alpha carbinolamine dehydratase PF00351 Biopterin-dependent aromatic amino acid hydroxylase PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00892 EamA-like transporter family PF00962 Adenosine/AMP deaminase PF00676 Dehydrogenase E1 component PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF01012 Electron transfer flavoprotein domain PF00766 Electron transfer flavoprotein FAD-binding domain PF01012 Electron transfer flavoprotein domain PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF16671 Actin cross-linking domain PF12146 Serine aminopeptidase, S33 PF11647 Membrane Localization Domain PF11713 Peptidase C80 family PF07634 RtxA repeat PF02794 RTX toxin acyltransferase family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00171 Aldehyde dehydrogenase family PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00376 MerR family regulatory protein PF09278 MerR, DNA binding PF01039 Carboxyl transferase domain PF00378 Enoyl-CoA hydratase/isomerase PF00682 HMGL-like PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF13192 Thioredoxin domain PF16925 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF16884 N-terminal domain of oxidoreductase PF00107 Zinc-binding dehydrogenase PF07690 Major Facilitator Superfamily PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF05231 MASE1 PF07690 Major Facilitator Superfamily PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF13419 Haloacid dehalogenase-like hydrolase PF00873 AcrB/AcrD/AcrF family PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00248 Aldo/keto reductase family PF00654 Voltage gated chloride channel PF01566 Natural resistance-associated macrophage protein PF01227 GTP cyclohydrolase I PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF00899 ThiF family PF00581 Rhodanese-like domain PF00923 Transaldolase/Fructose-6-phosphate aldolase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF08447 PAS fold PF00793 DAHP synthetase I family PF01040 UbiA prenyltransferase family PF02628 Cytochrome oxidase assembly protein PF00510 Cytochrome c oxidase subunit III PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF01557 Fumarylacetoacetate (FAA) hydrolase family PF01047 MarR family PF02566 OsmC-like protein PF00578 AhpC/TSA family PF00892 EamA-like transporter family PF00462 Glutaredoxin PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01042 Endoribonuclease L-PSP PF00474 Sodium:solute symporter family PF07969 Amidohydrolase family PF02685 Glucokinase PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF00005 ABC transporter PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF12706 Beta-lactamase superfamily domain PF01047 MarR family PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00132 Bacterial transferase hexapeptide (six repeats) PF03372 Endonuclease/Exonuclease/phosphatase family PF01979 Amidohydrolase family PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF12833 Helix-turn-helix domain PF00583 Acetyltransferase (GNAT) family PF01272 Transcription elongation factor, GreA/GreB, C-term PF14760 Rnk N-terminus PF00478 IMP dehydrogenase / GMP reductase domain PF01256 Carbohydrate kinase PF03853 YjeF-related protein N-terminus PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF12838 4Fe-4S dicluster domain PF13187 4Fe-4S dicluster domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF03892 Nitrate reductase cytochrome c-type subunit (NapB) PF07646 Kelch motif PF01344 Kelch motif PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF00701 Dihydrodipicolinate synthetase family PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF03480 Bacterial extracellular solute-binding protein, family 7 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase PF00480 ROK family PF00561 alpha/beta hydrolase fold PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00106 short chain dehydrogenase PF07549 SecD/SecF GG Motif PF13721 SecD export protein N-terminal TM region PF02355 Protein export membrane protein PF13407 Periplasmic binding protein domain PF01541 GIY-YIG catalytic domain PF04337 Protein of unknown function, DUF480 PF04363 Protein of unknown function (DUF496) PF01554 MatE PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF00709 Adenylosuccinate synthetase PF00462 Glutaredoxin PF08534 Redoxin PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01037 Lrp/AsnC ligand binding domain PF13520 Amino acid permease PF13230 Glutamine amidotransferases class-II PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF12833 Helix-turn-helix domain PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF07969 Amidohydrolase family PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00326 Prolyl oligopeptidase family PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PF02652 L-lactate permease PF02754 Cysteine-rich domain PF11870 Domain of unknown function (DUF3390) PF13183 4Fe-4S dicluster domain PF02589 LUD domain PF02589 LUD domain PF07690 Major Facilitator Superfamily PF02378 Phosphotransferase system, EIIC PF04170 NlpE N-terminal domain PF17185 NlpE C-terminal OB domain PF00005 ABC transporter PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF17996 Carbohydrate esterase 2 N-terminal PF13472 GDSL-like Lipase/Acylhydrolase family PF00497 Bacterial extracellular solute-binding proteins, family 3 PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF01648 4'-phosphopantetheinyl transferase superfamily PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00668 Condensation domain PF07993 Male sterility protein PF00550 Phosphopantetheine attachment site PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00668 Condensation domain PF00550 Phosphopantetheine attachment site PF00975 Thioesterase domain PF00793 DAHP synthetase I family PF00425 chorismate binding enzyme PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF08021 Siderophore-interacting FAD-binding domain PF04954 Siderophore-interacting protein PF00857 Isochorismatase family PF00550 Phosphopantetheine attachment site PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF01497 Periplasmic binding protein PF07715 TonB-dependent Receptor Plug Domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00668 Condensation domain PF00550 Phosphopantetheine attachment site PF00975 Thioesterase domain PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF00753 Metallo-beta-lactamase superfamily PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00873 AcrB/AcrD/AcrF family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01212 Beta-eliminating lyase PF03222 Tryptophan/tyrosine permease family PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF00356 Bacterial regulatory proteins, lacI family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF03611 PTS system sugar-specific permease component PF01327 Polypeptide deformylase PF00041 Fibronectin type III domain PF12561 ToxR activated gene A lipoprotein domain PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF00171 Aldehyde dehydrogenase family PF01590 GAF domain PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF13407 Periplasmic binding protein domain PF02567 Phenazine biosynthesis-like protein PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF01479 S4 domain PF00579 tRNA synthetases class I (W and Y) PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF13533 Biotin-lipoyl like PF14864 Alkyl sulfatase C-terminal PF14863 Alkyl sulfatase dimerisation PF00753 Metallo-beta-lactamase superfamily PF14864 Alkyl sulfatase C-terminal PF14863 Alkyl sulfatase dimerisation PF00753 Metallo-beta-lactamase superfamily PF14864 Alkyl sulfatase C-terminal PF14863 Alkyl sulfatase dimerisation PF00753 Metallo-beta-lactamase superfamily PF01758 Sodium Bile acid symporter family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF07670 Nucleoside recognition PF07670 Nucleoside recognition PF00128 Alpha amylase, catalytic domain PF14583 Oligogalacturonate lyase PF00474 Sodium:solute symporter family PF13229 Right handed beta helix region PF00474 Sodium:solute symporter family PF06917 Periplasmic pectate lyase PF00294 pfkB family carbohydrate kinase PF00892 EamA-like transporter family PF01238 Phosphomannose isomerase type I PF02595 Glycerate kinase family PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF00128 Alpha amylase, catalytic domain PF09261 Alpha mannosidase middle domain PF07748 Glycosyl hydrolases family 38 C-terminal domain PF01074 Glycosyl hydrolases family 38 N-terminal domain PF02378 Phosphotransferase system, EIIC PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF07883 Cupin domain PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF00583 Acetyltransferase (GNAT) family PF00795 Carbon-nitrogen hydrolase PF00924 Mechanosensitive ion channel PF13533 Biotin-lipoyl like PF00293 NUDIX domain PF01161 Phosphatidylethanolamine-binding protein PF12833 Helix-turn-helix domain PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF00376 MerR family regulatory protein PF09278 MerR, DNA binding PF17151 Periplasmic sensor domain PF00990 Diguanylate cyclase, GGDEF domain PF00583 Acetyltransferase (GNAT) family PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF02001 Protein of unknown function DUF134 PF03150 Di-haem cytochrome c peroxidase PF00034 Cytochrome c PF06942 GlpM protein PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF07690 Major Facilitator Superfamily PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF00892 EamA-like transporter family PF00970 Oxidoreductase FAD-binding domain PF00175 Oxidoreductase NAD-binding domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00881 Nitroreductase family PF00561 alpha/beta hydrolase fold PF07504 Fungalysin/Thermolysin Propeptide Motif PF03413 Peptidase propeptide and YPEB domain PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF04151 Bacterial pre-peptidase C-terminal domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF13599 Pentapeptide repeats (9 copies) PF01266 FAD dependent oxidoreductase PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02743 Cache domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02743 Cache domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF08267 Cobalamin-independent synthase, N-terminal domain PF01717 Cobalamin-independent synthase, Catalytic domain PF11490 DNA polymerase III polC-type N-terminus II PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF00929 Exonuclease PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF01497 Periplasmic binding protein PF01032 FecCD transport family PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01116 Fructose-bisphosphate aldolase class-II PF01979 Amidohydrolase family PF03610 PTS system fructose IIA component PF03609 PTS system sorbose-specific iic component PF01380 SIS domain PF08013 Tagatose 6 phosphate kinase PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00892 EamA-like transporter family PF12833 Helix-turn-helix domain PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF01641 SelR domain PF01625 Peptide methionine sulfoxide reductase PF01867 CRISPR associated protein Cas1 PF09827 CRISPR associated protein Cas2 PF09827 CRISPR associated protein Cas2 PF00462 Glutaredoxin PF12852 Cupin PF12833 Helix-turn-helix domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF03475 3-alpha domain PF03473 MOSC domain PF13495 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF05035 2-keto-3-deoxy-galactonokinase PF01081 KDPG and KHG aldolase PF03480 Bacterial extracellular solute-binding protein, family 7 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF00920 Dehydratase family PF00701 Dihydrodipicolinate synthetase family PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00857 Isochorismatase family PF00356 Bacterial regulatory proteins, lacI family PF00155 Aminotransferase class I and II PF03786 D-mannonate dehydratase (UxuA) PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF03480 Bacterial extracellular solute-binding protein, family 7 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF01232 Mannitol dehydrogenase Rossmann domain PF08125 Mannitol dehydrogenase C-terminal domain PF02614 Glucuronate isomerase PF00294 pfkB family carbohydrate kinase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF04399 Glutaredoxin 2, C terminal domain PF13417 Glutathione S-transferase, N-terminal domain PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF03611 PTS system sugar-specific permease component PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF00596 Class II Aldolase and Adducin N-terminal domain PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF01261 Xylose isomerase-like TIM barrel PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF02278 Polysaccharide lyase family 8, super-sandwich domain PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain PF02278 Polysaccharide lyase family 8, super-sandwich domain PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain PF17386 Lacto-N-biose phosphorylase C-terminal domain PF17385 Lacto-N-biose phosphorylase central domain PF07470 Glycosyl Hydrolase Family 88 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain PF01740 STAS domain PF00916 Sulfate permease family PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF16347 Domain of unknown function (DUF4976) PF00884 Sulfatase PF16385 Domain of unknown function PF00884 Sulfatase PF00474 Sodium:solute symporter family PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF14850 DNA-binding domain of Proline dehydrogenase PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF12833 Helix-turn-helix domain PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF01243 Pyridoxamine 5'-phosphate oxidase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF14602 Hexapeptide repeat of succinyl-transferase PF12464 Maltose acetyltransferase PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF13580 SIS domain PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00989 PAS fold PF00300 Histidine phosphatase superfamily (branch 1) PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF03975 CheD chemotactic sensory transduction PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF01584 CheW-like domain PF01584 CheW-like domain PF01584 CheW-like domain PF09078 CheY binding PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF13718 GNAT acetyltransferase 2 PF05127 Helicase PF08775 ParB family PF02195 ParB-like nuclease domain PF13614 AAA domain PF18607 ParA helix turn helix domain