locus-tag class description BME96_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BME96_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BME96_00010 PF02767 DNA polymerase III beta subunit, central domain BME96_00025 PF02463 RecF/RecN/SMC N terminal domain BME96_00030 PF04025 Domain of unknown function (DUF370) BME96_00035 PF00204 DNA gyrase B BME96_00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_00035 PF01751 Toprim domain BME96_00035 PF00986 DNA gyrase B subunit, carboxyl terminus BME96_00040 PF00521 DNA gyrase/topoisomerase IV, subunit A BME96_00040 PF03989 DNA gyrase C-terminal domain, beta-propeller BME96_00045 PF01966 HD domain BME96_00050 PF14175 YaaC-like Protein BME96_00055 PF00478 IMP dehydrogenase / GMP reductase domain BME96_00055 PF00571 CBS domain BME96_00060 PF00768 D-alanyl-D-alanine carboxypeptidase BME96_00060 PF07943 Penicillin-binding protein 5, C-terminal domain BME96_00065 PF01680 SOR/SNZ family BME96_00070 PF01174 SNO glutamine amidotransferase family BME96_00075 PF02403 Seryl-tRNA synthetase N-terminal domain BME96_00075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BME96_00080 PF09383 NIL domain BME96_00080 PF00005 ABC transporter BME96_00085 PF00528 Binding-protein-dependent transport system inner membrane component BME96_00090 PF03180 NLPA lipoprotein BME96_00105 PF04607 Region found in RelA / SpoT proteins BME96_00110 PF03807 NADP oxidoreductase coenzyme F420-dependent BME96_00110 PF14748 Pyrroline-5-carboxylate reductase dimerisation BME96_00115 PF02416 mttA/Hcf106 family BME96_00120 PF01712 Deoxynucleoside kinase BME96_00125 PF01712 Deoxynucleoside kinase BME96_00135 PF00375 Sodium:dicarboxylate symporter family BME96_00140 PF01609 Transposase DDE domain BME96_00145 PF00501 AMP-binding enzyme BME96_00145 PF13193 AMP-binding enzyme C-terminal domain BME96_00150 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal BME96_00150 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal BME96_00155 PF00175 Oxidoreductase NAD-binding domain BME96_00155 PF00970 Oxidoreductase FAD-binding domain BME96_00155 PF00042 Globin BME96_00160 PF02082 Transcriptional regulator BME96_00165 PF01965 DJ-1/PfpI family BME96_00170 PF00704 Glycosyl hydrolases family 18 BME96_00170 PF01476 LysM domain BME96_00175 PF00857 Isochorismatase family BME96_00180 PF14437 MafB19-like deaminase BME96_00195 PF12169 DNA polymerase III subunits gamma and tau domain III BME96_00200 PF02575 YbaB/EbfC DNA-binding family BME96_00205 PF02132 RecR protein BME96_00205 PF13662 Toprim domain BME96_00220 PF10764 Inhibitor of sigma-G Gin BME96_00225 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BME96_00225 PF01276 Orn/Lys/Arg decarboxylase, major domain BME96_00230 PF02223 Thymidylate kinase BME96_00235 PF06153 Cyclic-di-AMP receptor BME96_00240 PF03885 Protein of unknown function (DUF327) BME96_00245 PF09115 DNA polymerase III, delta subunit, C terminal BME96_00250 PF04468 PSP1 C-terminal conserved region BME96_00255 PF06156 Initiation control protein YabA BME96_00260 PF05175 Methyltransferase small domain BME96_00265 PF01541 GIY-YIG catalytic domain BME96_00270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BME96_00280 PF18277 AbrB C-terminal domain BME96_00280 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BME96_00285 PF09334 tRNA synthetases class I (M) BME96_00285 PF08264 Anticodon-binding domain of tRNA BME96_00285 PF01588 Putative tRNA binding domain BME96_00290 PF01026 TatD related DNase BME96_00295 PF03990 G5-linked-Ubiquitin-like domain BME96_00295 PF07501 G5 domain BME96_00295 PF06725 3D domain BME96_00305 PF13662 Toprim domain BME96_00305 PF13331 Domain of unknown function (DUF4093) BME96_00310 PF00398 Ribosomal RNA adenine dimethylase BME96_00315 PF05582 YabG peptidase U57 BME96_00320 PF06257 Biofilm formation stimulator VEG BME96_00325 PF00269 Small, acid-soluble spore proteins, alpha/beta type BME96_00330 PF00288 GHMP kinases N terminal domain BME96_00330 PF08544 GHMP kinases C terminal BME96_00335 PF00156 Phosphoribosyl transferase domain BME96_00335 PF09182 Bacterial purine repressor, N-terminal BME96_00340 PF04026 SpoVG BME96_00345 PF00483 Nucleotidyl transferase BME96_00345 PF14602 Hexapeptide repeat of succinyl-transferase BME96_00345 PF00132 Bacterial transferase hexapeptide (six repeats) BME96_00350 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BME96_00350 PF14572 Phosphoribosyl synthetase-associated domain BME96_00355 PF01386 Ribosomal L25p family BME96_00355 PF14693 Ribosomal protein TL5, C-terminal domain BME96_00360 PF01195 Peptidyl-tRNA hydrolase BME96_00370 PF02559 CarD-like/TRCF domain BME96_00370 PF00270 DEAD/DEAH box helicase BME96_00370 PF00271 Helicase conserved C-terminal domain BME96_00370 PF03461 TRCF domain BME96_00370 PF17757 UvrB interaction domain BME96_00375 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BME96_00375 PF15714 Stage V sporulation protein T C-terminal, transcription factor BME96_00380 PF14667 Polysaccharide biosynthesis C-terminal domain BME96_00380 PF01943 Polysaccharide biosynthesis protein BME96_00385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BME96_00385 PF03819 MazG nucleotide pyrophosphohydrolase domain BME96_00390 PF01479 S4 domain BME96_00395 PF00183 Hsp90 protein BME96_00400 PF07873 YabP family BME96_00415 PF00575 S1 RNA binding domain BME96_00425 PF07228 Stage II sporulation protein E (SpoIIE) BME96_00430 PF00092 von Willebrand factor type A domain BME96_00435 PF00069 Protein kinase domain BME96_00440 PF11734 TilS substrate C-terminal domain BME96_00440 PF01171 PP-loop family BME96_00450 PF06480 FtsH Extracellular BME96_00450 PF01434 Peptidase family M41 BME96_00450 PF17862 AAA+ lid domain BME96_00450 PF00004 ATPase family associated with various cellular activities (AAA) BME96_00455 PF03309 Type III pantothenate kinase BME96_00460 PF01430 Hsp33 protein BME96_00470 PF00291 Pyridoxal-phosphate dependent enzyme BME96_00475 PF00809 Pterin binding enzyme BME96_00480 PF02152 Dihydroneopterin aldolase BME96_00485 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BME96_00490 PF01381 Helix-turn-helix BME96_00495 PF00152 tRNA synthetases class II (D, K and N) BME96_00495 PF01336 OB-fold nucleic acid binding domain BME96_00575 PF02308 MgtC family BME96_00580 PF05848 CtsR N-terminal HTH domain BME96_00580 PF17727 CtsR C-terminal dimerization domain BME96_00585 PF02151 UvrB/uvrC motif BME96_00590 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BME96_00595 PF07724 AAA domain (Cdc48 subfamily) BME96_00595 PF02861 Clp amino terminal domain, pathogenicity island component BME96_00595 PF00004 ATPase family associated with various cellular activities (AAA) BME96_00595 PF17871 AAA lid domain BME96_00595 PF10431 C-terminal, D2-small domain, of ClpB protein BME96_00600 PF18073 Rubredoxin metal binding domain BME96_00610 PF00749 tRNA synthetases class I (E and Q), catalytic domain BME96_00615 PF06426 Serine acetyltransferase, N-terminal BME96_00615 PF00132 Bacterial transferase hexapeptide (six repeats) BME96_00620 PF01406 tRNA synthetases class I (C) catalytic domain BME96_00620 PF09190 DALR domain BME96_00625 PF00636 Ribonuclease III domain BME96_00630 PF00588 SpoU rRNA Methylase family BME96_00630 PF08032 RNA 2'-O ribose methyltransferase substrate binding BME96_00635 PF05991 YacP-like NYN domain BME96_00640 PF08281 Sigma-70, region 4 BME96_00640 PF04542 Sigma-70 region 2 BME96_00645 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BME96_00650 PF02357 Transcription termination factor nusG BME96_00650 PF00467 KOW motif BME96_00660 PF00298 Ribosomal protein L11, RNA binding domain BME96_00660 PF03946 Ribosomal protein L11, N-terminal domain BME96_00665 PF00687 Ribosomal protein L1p/L10e family BME96_00670 PF00466 Ribosomal protein L10 BME96_00680 PF05175 Methyltransferase small domain BME96_00685 PF04563 RNA polymerase beta subunit BME96_00685 PF10385 RNA polymerase beta subunit external 1 domain BME96_00685 PF00562 RNA polymerase Rpb2, domain 6 BME96_00685 PF04565 RNA polymerase Rpb2, domain 3 BME96_00685 PF04561 RNA polymerase Rpb2, domain 2 BME96_00685 PF04560 RNA polymerase Rpb2, domain 7 BME96_00690 PF05000 RNA polymerase Rpb1, domain 4 BME96_00690 PF04998 RNA polymerase Rpb1, domain 5 BME96_00690 PF04983 RNA polymerase Rpb1, domain 3 BME96_00690 PF00623 RNA polymerase Rpb1, domain 2 BME96_00690 PF04997 RNA polymerase Rpb1, domain 1 BME96_00695 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BME96_00700 PF00164 Ribosomal protein S12/S23 BME96_00705 PF00177 Ribosomal protein S7p/S5e BME96_00710 PF14492 Elongation Factor G, domain II BME96_00710 PF03144 Elongation factor Tu domain 2 BME96_00710 PF00679 Elongation factor G C-terminus BME96_00710 PF03764 Elongation factor G, domain IV BME96_00710 PF00009 Elongation factor Tu GTP binding domain BME96_00715 PF03144 Elongation factor Tu domain 2 BME96_00715 PF00009 Elongation factor Tu GTP binding domain BME96_00715 PF03143 Elongation factor Tu C-terminal domain BME96_00720 PF00338 Ribosomal protein S10p/S20e BME96_00725 PF00297 Ribosomal protein L3 BME96_00730 PF00573 Ribosomal protein L4/L1 family BME96_00735 PF00276 Ribosomal protein L23 BME96_00740 PF00181 Ribosomal Proteins L2, RNA binding domain BME96_00740 PF03947 Ribosomal Proteins L2, C-terminal domain BME96_00745 PF00203 Ribosomal protein S19 BME96_00750 PF00237 Ribosomal protein L22p/L17e BME96_00755 PF07650 KH domain BME96_00755 PF00189 Ribosomal protein S3, C-terminal domain BME96_00760 PF00252 Ribosomal protein L16p/L10e BME96_00765 PF00831 Ribosomal L29 protein BME96_00770 PF00366 Ribosomal protein S17 BME96_00775 PF00238 Ribosomal protein L14p/L23e BME96_00780 PF00467 KOW motif BME96_00780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BME96_00785 PF00281 Ribosomal protein L5 BME96_00785 PF00673 ribosomal L5P family C-terminus BME96_00790 PF00253 Ribosomal protein S14p/S29e BME96_00795 PF00410 Ribosomal protein S8 BME96_00800 PF00347 Ribosomal protein L6 BME96_00805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BME96_00810 PF03719 Ribosomal protein S5, C-terminal domain BME96_00810 PF00333 Ribosomal protein S5, N-terminal domain BME96_00815 PF00327 Ribosomal protein L30p/L7e BME96_00820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BME96_00825 PF00344 SecY translocase BME96_00830 PF05191 Adenylate kinase, active site lid BME96_00840 PF01176 Translation initiation factor 1A / IF-1 BME96_00845 PF00444 Ribosomal protein L36 BME96_00850 PF00416 Ribosomal protein S13/S18 BME96_00855 PF00411 Ribosomal protein S11 BME96_00860 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BME96_00860 PF01000 RNA polymerase Rpb3/RpoA insert domain BME96_00860 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BME96_00865 PF01196 Ribosomal protein L17 BME96_00870 PF00005 ABC transporter BME96_00875 PF00005 ABC transporter BME96_00885 PF01416 tRNA pseudouridine synthase BME96_00890 PF00572 Ribosomal protein L13 BME96_00895 PF00380 Ribosomal protein S9/S16 BME96_00970 PF04172 LrgB-like family BME96_00975 PF03788 LrgA family BME96_00980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_00980 PF03466 LysR substrate binding domain BME96_00985 PF01131 DNA topoisomerase BME96_00985 PF01751 Toprim domain BME96_01000 PF03176 MMPL family BME96_01005 PF07728 AAA domain (dynein-related subfamily) BME96_01010 PF00092 von Willebrand factor type A domain BME96_01025 PF13533 Biotin-lipoyl like BME96_01030 PF03631 Virulence factor BrkB BME96_01055 PF01520 N-acetylmuramoyl-L-alanine amidase BME96_01060 PF10609 NUBPL iron-transfer P-loop NTPase BME96_01065 PF17898 Spore germination GerD central core domain BME96_01070 PF14089 KinB-signalling pathway activation in sporulation BME96_01075 PF01522 Polysaccharide deacetylase BME96_01130 PF00293 NUDIX domain BME96_01135 PF01872 RibD C-terminal domain BME96_01140 PF07885 Ion channel BME96_01185 PF00368 Hydroxymethylglutaryl-coenzyme A reductase BME96_01190 PF08544 GHMP kinases C terminal BME96_01190 PF10509 Galactokinase galactose-binding signature BME96_01190 PF00288 GHMP kinases N terminal domain BME96_01200 PF00288 GHMP kinases N terminal domain BME96_01200 PF08544 GHMP kinases C terminal BME96_01205 PF00491 Arginase family BME96_01210 PF04542 Sigma-70 region 2 BME96_01210 PF08281 Sigma-70, region 4 BME96_01215 PF13490 Putative zinc-finger BME96_01220 PF02457 DisA bacterial checkpoint controller nucleotide-binding BME96_01225 PF07949 YbbR-like protein BME96_01230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BME96_01230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BME96_01230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BME96_01230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BME96_01240 PF00486 Transcriptional regulatory protein, C terminal BME96_01240 PF00072 Response regulator receiver domain BME96_01245 PF00512 His Kinase A (phospho-acceptor) domain BME96_01245 PF00672 HAMP domain BME96_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_01250 PF02687 FtsX-like permease family BME96_01255 PF00005 ABC transporter BME96_01270 PF00326 Prolyl oligopeptidase family BME96_01275 PF01380 SIS domain BME96_01280 PF00144 Beta-lactamase BME96_01285 PF01904 Protein of unknown function DUF72 BME96_01290 PF12848 ABC transporter BME96_01290 PF16326 ABC transporter C-terminal domain BME96_01290 PF00005 ABC transporter BME96_01310 PF00360 Phytochrome region BME96_01310 PF00990 Diguanylate cyclase, GGDEF domain BME96_01310 PF01590 GAF domain BME96_01310 PF00563 EAL domain BME96_01320 PF01654 Cytochrome bd terminal oxidase subunit I BME96_01325 PF02322 Cytochrome bd terminal oxidase subunit II BME96_01330 PF00664 ABC transporter transmembrane region BME96_01330 PF00005 ABC transporter BME96_01335 PF00664 ABC transporter transmembrane region BME96_01335 PF00005 ABC transporter BME96_01345 PF00440 Bacterial regulatory proteins, tetR family BME96_01345 PF17932 Tetracyclin repressor-like, C-terminal domain BME96_01350 PF00005 ABC transporter BME96_01350 PF13732 Domain of unknown function (DUF4162) BME96_01360 PF12787 EcsC protein family BME96_01370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BME96_01370 PF01568 Molydopterin dinucleotide binding domain BME96_01370 PF00384 Molybdopterin oxidoreductase BME96_01400 PF07690 Major Facilitator Superfamily BME96_01410 PF00072 Response regulator receiver domain BME96_01410 PF00196 Bacterial regulatory proteins, luxR family BME96_01420 PF07730 Histidine kinase BME96_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_01430 PF00106 short chain dehydrogenase BME96_01435 PF05525 Branched-chain amino acid transport protein BME96_01440 PF07729 FCD domain BME96_01440 PF00392 Bacterial regulatory proteins, gntR family BME96_01445 PF06628 Catalase-related immune-responsive BME96_01445 PF00199 Catalase BME96_01450 PF00924 Mechanosensitive ion channel BME96_01460 PF01699 Sodium/calcium exchanger protein BME96_01465 PF13769 Virulence factor BME96_01465 PF08712 Scaffold protein Nfu/NifU N terminal BME96_01470 PF03061 Thioesterase superfamily BME96_01475 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BME96_01480 PF00067 Cytochrome P450 BME96_01485 PF17785 PUA-like domain BME96_01485 PF10672 S-adenosylmethionine-dependent methyltransferase BME96_01490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BME96_01490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BME96_01495 PF00288 GHMP kinases N terminal domain BME96_01495 PF08544 GHMP kinases C terminal BME96_01500 PF00291 Pyridoxal-phosphate dependent enzyme BME96_01505 PF01842 ACT domain BME96_01505 PF00742 Homoserine dehydrogenase BME96_01505 PF03447 Homoserine dehydrogenase, NAD binding domain BME96_01520 PF02627 Carboxymuconolactone decarboxylase family BME96_01525 PF07690 Major Facilitator Superfamily BME96_01530 PF01978 Sugar-specific transcriptional regulator TrmB BME96_01530 PF11495 Archaeal transcriptional regulator TrmB BME96_01540 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_01570 PF03601 Conserved hypothetical protein 698 BME96_01575 PF03466 LysR substrate binding domain BME96_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_01580 PF07739 TipAS antibiotic-recognition domain BME96_01580 PF13411 MerR HTH family regulatory protein BME96_01585 PF02581 Thiamine monophosphate synthase BME96_01590 PF02110 Hydroxyethylthiazole kinase family BME96_01595 PF08543 Phosphomethylpyrimidine kinase BME96_01605 PF08240 Alcohol dehydrogenase GroES-like domain BME96_01605 PF13823 Alcohol dehydrogenase GroES-associated BME96_01605 PF00107 Zinc-binding dehydrogenase BME96_01625 PF00474 Sodium:solute symporter family BME96_01635 PF00501 AMP-binding enzyme BME96_01635 PF13193 AMP-binding enzyme C-terminal domain BME96_01645 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_01650 PF07997 Protein of unknown function (DUF1694) BME96_01665 PF07875 Coat F domain BME96_01670 PF00753 Metallo-beta-lactamase superfamily BME96_01680 PF03372 Endonuclease/Exonuclease/phosphatase family BME96_01685 PF00392 Bacterial regulatory proteins, gntR family BME96_01690 PF00005 ABC transporter BME96_01705 PF00085 Thioredoxin BME96_01725 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BME96_01725 PF04055 Radical SAM superfamily BME96_01730 PF03099 Biotin/lipoate A/B protein ligase family BME96_01740 PF00290 Tryptophan synthase alpha chain BME96_01745 PF00291 Pyridoxal-phosphate dependent enzyme BME96_01750 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BME96_01755 PF00218 Indole-3-glycerol phosphate synthase BME96_01760 PF02885 Glycosyl transferase family, helical bundle domain BME96_01760 PF00591 Glycosyl transferase family, a/b domain BME96_01765 PF02885 Glycosyl transferase family, helical bundle domain BME96_01765 PF00117 Glutamine amidotransferase class-I BME96_01765 PF00591 Glycosyl transferase family, a/b domain BME96_01770 PF04715 Anthranilate synthase component I, N terminal region BME96_01770 PF00425 chorismate binding enzyme BME96_01775 PF07478 D-ala D-ala ligase C-terminus BME96_01775 PF01820 D-ala D-ala ligase N-terminus BME96_01780 PF01235 Sodium:alanine symporter family BME96_01785 PF00881 Nitroreductase family BME96_01805 PF01966 HD domain BME96_01810 PF02557 D-alanyl-D-alanine carboxypeptidase BME96_01815 PF07690 Major Facilitator Superfamily BME96_01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_01825 PF01741 Large-conductance mechanosensitive channel, MscL BME96_01835 PF01546 Peptidase family M20/M25/M40 BME96_01835 PF07687 Peptidase dimerisation domain BME96_01840 PF00581 Rhodanese-like domain BME96_01845 PF00958 GMP synthase C terminal domain BME96_01845 PF00117 Glutamine amidotransferase class-I BME96_01845 PF13673 Acetyltransferase (GNAT) domain BME96_01845 PF03352 Methyladenine glycosylase BME96_01845 PF13302 Acetyltransferase (GNAT) domain BME96_01850 PF06968 Biotin and Thiamin Synthesis associated domain BME96_01850 PF04055 Radical SAM superfamily BME96_01855 PF02632 BioY family BME96_01860 PF00672 HAMP domain BME96_01860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_01860 PF02743 Cache domain BME96_01870 PF01425 Amidase BME96_01875 PF00248 Aldo/keto reductase family BME96_01880 PF03193 RsgA GTPase BME96_01890 PF01070 FMN-dependent dehydrogenase BME96_01895 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) BME96_01900 PF00753 Metallo-beta-lactamase superfamily BME96_01905 PF01323 DSBA-like thioredoxin domain BME96_01910 PF01032 FecCD transport family BME96_01915 PF01032 FecCD transport family BME96_01920 PF00005 ABC transporter BME96_01925 PF01497 Periplasmic binding protein BME96_01935 PF00155 Aminotransferase class I and II BME96_01940 PF01502 Phosphoribosyl-AMP cyclohydrolase BME96_01940 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BME96_01945 PF00977 Histidine biosynthesis protein BME96_01950 PF00977 Histidine biosynthesis protein BME96_01955 PF00117 Glutamine amidotransferase class-I BME96_01960 PF00475 Imidazoleglycerol-phosphate dehydratase BME96_01965 PF00815 Histidinol dehydrogenase BME96_01970 PF01634 ATP phosphoribosyltransferase BME96_01975 PF13393 Histidyl-tRNA synthetase BME96_01980 PF02811 PHP domain BME96_01985 PF04304 Protein of unknown function (DUF454) BME96_01995 PF01565 FAD binding domain BME96_01995 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BME96_02000 PF00005 ABC transporter BME96_02005 PF00528 Binding-protein-dependent transport system inner membrane component BME96_02010 PF00528 Binding-protein-dependent transport system inner membrane component BME96_02020 PF08546 Ketopantoate reductase PanE/ApbA C terminal BME96_02020 PF02558 Ketopantoate reductase PanE/ApbA BME96_02025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BME96_02030 PF13539 D-alanyl-D-alanine carboxypeptidase BME96_02035 PF02660 Glycerol-3-phosphate acyltransferase BME96_02040 PF04306 Protein of unknown function (DUF456) BME96_02045 PF08543 Phosphomethylpyrimidine kinase BME96_02050 PF00857 Isochorismatase family BME96_02060 PF03129 Anticodon binding domain BME96_02060 PF09180 Prolyl-tRNA synthetase, C-terminal BME96_02060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BME96_02070 PF00497 Bacterial extracellular solute-binding proteins, family 3 BME96_02075 PF00528 Binding-protein-dependent transport system inner membrane component BME96_02080 PF00005 ABC transporter BME96_02085 PF17863 AAA lid domain BME96_02085 PF07726 ATPase family associated with various cellular activities (AAA) BME96_02090 PF00255 Glutathione peroxidase BME96_02100 PF17853 GGDEF-like domain BME96_02100 PF06018 CodY GAF-like domain BME96_02100 PF13556 PucR C-terminal helix-turn-helix domain BME96_02105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BME96_02105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BME96_02125 PF00313 'Cold-shock' DNA-binding domain BME96_02130 PF12697 Alpha/beta hydrolase family BME96_02130 PF08241 Methyltransferase domain BME96_02140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BME96_02140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BME96_02145 PF13673 Acetyltransferase (GNAT) domain BME96_02150 PF01258 Prokaryotic dksA/traR C4-type zinc finger BME96_02155 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) BME96_02160 PF13180 PDZ domain BME96_02165 PF00072 Response regulator receiver domain BME96_02165 PF00486 Transcriptional regulatory protein, C terminal BME96_02170 PF00672 HAMP domain BME96_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_02170 PF00512 His Kinase A (phospho-acceptor) domain BME96_02180 PF02378 Phosphotransferase system, EIIC BME96_02180 PF00367 phosphotransferase system, EIIB BME96_02185 PF16657 Maltogenic Amylase, C-terminal domain BME96_02185 PF00128 Alpha amylase, catalytic domain BME96_02190 PF00392 Bacterial regulatory proteins, gntR family BME96_02190 PF07702 UTRA domain BME96_02200 PF08892 YqcI/YcgG family BME96_02205 PF12679 ABC-2 family transporter protein BME96_02210 PF00005 ABC transporter BME96_02220 PF13333 Integrase core domain BME96_02220 PF00665 Integrase core domain BME96_02220 PF13276 HTH-like domain BME96_02225 PF02803 Thiolase, C-terminal domain BME96_02225 PF00108 Thiolase, N-terminal domain BME96_02230 PF10011 Predicted membrane protein (DUF2254) BME96_02235 PF09587 Bacterial capsule synthesis protein PGA_cap BME96_02245 PF00085 Thioredoxin BME96_02255 PF00072 Response regulator receiver domain BME96_02255 PF00486 Transcriptional regulatory protein, C terminal BME96_02260 PF00512 His Kinase A (phospho-acceptor) domain BME96_02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_02260 PF00672 HAMP domain BME96_02270 PF00781 Diacylglycerol kinase catalytic domain BME96_02275 PF01047 MarR family BME96_02280 PF13460 NAD(P)H-binding BME96_02280 PF11066 Protein of unknown function (DUF2867) BME96_02295 PF12146 Serine aminopeptidase, S33 BME96_02300 PF02645 Uncharacterised protein, DegV family COG1307 BME96_02305 PF00892 EamA-like transporter family BME96_02310 PF00271 Helicase conserved C-terminal domain BME96_02310 PF00270 DEAD/DEAH box helicase BME96_02315 PF01694 Rhomboid family BME96_02320 PF01648 4'-phosphopantetheinyl transferase superfamily BME96_02325 PF01256 Carbohydrate kinase BME96_02325 PF03853 YjeF-related protein N-terminus BME96_02335 PF00842 Alanine racemase, C-terminal domain BME96_02335 PF01168 Alanine racemase, N-terminal domain BME96_02345 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BME96_02350 PF08678 Rsbr N terminal BME96_02350 PF01740 STAS domain BME96_02355 PF01740 STAS domain BME96_02360 PF13581 Histidine kinase-like ATPase domain BME96_02365 PF07228 Stage II sporulation protein E (SpoIIE) BME96_02365 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BME96_02370 PF01740 STAS domain BME96_02375 PF13581 Histidine kinase-like ATPase domain BME96_02380 PF04545 Sigma-70, region 4 BME96_02380 PF04542 Sigma-70 region 2 BME96_02380 PF04539 Sigma-70 region 3 BME96_02385 PF07228 Stage II sporulation protein E (SpoIIE) BME96_02390 PF17674 HHH domain BME96_02390 PF16921 Tex protein YqgF-like domain BME96_02390 PF00575 S1 RNA binding domain BME96_02390 PF09371 Tex-like protein N-terminal domain BME96_02395 PF00199 Catalase BME96_02395 PF06628 Catalase-related immune-responsive BME96_02400 PF10263 SprT-like family BME96_02490 PF02769 AIR synthase related protein, C-terminal domain BME96_02490 PF00586 AIR synthase related protein, N-terminal domain BME96_02495 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BME96_02500 PF00814 Glycoprotease family BME96_02505 PF00583 Acetyltransferase (GNAT) family BME96_02510 PF00814 Glycoprotease family BME96_02515 PF01098 Cell cycle protein BME96_02520 PF00005 ABC transporter BME96_02520 PF12848 ABC transporter BME96_02520 PF16326 ABC transporter C-terminal domain BME96_02525 PF01967 MoaC family BME96_02530 PF02629 CoA binding domain BME96_02530 PF06971 Putative DNA-binding protein N-terminus BME96_02540 PF02517 CPBP intramembrane metalloprotease BME96_02545 PF00166 Chaperonin 10 Kd subunit BME96_02550 PF00118 TCP-1/cpn60 chaperonin family BME96_02555 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BME96_02560 PF00890 FAD binding domain BME96_02560 PF04205 FMN-binding domain BME96_02560 PF03358 NADPH-dependent FMN reductase BME96_02565 PF01225 Mur ligase family, catalytic domain BME96_02565 PF08245 Mur ligase middle domain BME96_02565 PF02875 Mur ligase family, glutamate ligase domain BME96_02570 PF13411 MerR HTH family regulatory protein BME96_02570 PF06445 GyrI-like small molecule binding domain BME96_02575 PF00583 Acetyltransferase (GNAT) family BME96_02580 PF17932 Tetracyclin repressor-like, C-terminal domain BME96_02580 PF00440 Bacterial regulatory proteins, tetR family BME96_02585 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_02590 PF03649 Uncharacterised protein family (UPF0014) BME96_02595 PF00005 ABC transporter BME96_02600 PF00486 Transcriptional regulatory protein, C terminal BME96_02600 PF00072 Response regulator receiver domain BME96_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_02610 PF00005 ABC transporter BME96_02615 PF02687 FtsX-like permease family BME96_02620 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_02625 PF00440 Bacterial regulatory proteins, tetR family BME96_02625 PF08359 YsiA-like protein, C-terminal region BME96_02635 PF00924 Mechanosensitive ion channel BME96_02640 PF02898 Nitric oxide synthase, oxygenase domain BME96_02645 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_02650 PF03845 Spore germination protein BME96_02655 PF05504 Spore germination B3/ GerAC like, C-terminal BME96_02660 PF01425 Amidase BME96_02665 PF03806 AbgT putative transporter family BME96_02685 PF00477 Small hydrophilic plant seed protein BME96_02685 PF10685 Stress-induced bacterial acidophilic repeat motif BME96_02690 PF17863 AAA lid domain BME96_02690 PF07726 ATPase family associated with various cellular activities (AAA) BME96_02695 PF01882 Protein of unknown function DUF58 BME96_02700 PF01841 Transglutaminase-like superfamily BME96_02700 PF11992 Domain of unknown function (DUF3488) BME96_02700 PF13559 Domain of unknown function (DUF4129) BME96_02705 PF02540 NAD synthase BME96_02705 PF00117 Glutamine amidotransferase class-I BME96_02705 PF00958 GMP synthase C terminal domain BME96_02710 PF00860 Permease family BME96_02720 PF01625 Peptide methionine sulfoxide reductase BME96_02725 PF03475 3-alpha domain BME96_02725 PF03473 MOSC domain BME96_02735 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_02740 PF00958 GMP synthase C terminal domain BME96_02740 PF13673 Acetyltransferase (GNAT) domain BME96_02740 PF13302 Acetyltransferase (GNAT) domain BME96_02740 PF03352 Methyladenine glycosylase BME96_02740 PF00117 Glutamine amidotransferase class-I BME96_02745 PF00731 AIR carboxylase BME96_02750 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BME96_02750 PF02222 ATP-grasp domain BME96_02755 PF00206 Lyase BME96_02755 PF10397 Adenylosuccinate lyase C-terminus BME96_02760 PF01259 SAICAR synthetase BME96_02765 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BME96_02775 PF00586 AIR synthase related protein, N-terminal domain BME96_02775 PF02769 AIR synthase related protein, C-terminal domain BME96_02775 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BME96_02780 PF00156 Phosphoribosyl transferase domain BME96_02785 PF00586 AIR synthase related protein, N-terminal domain BME96_02785 PF02769 AIR synthase related protein, C-terminal domain BME96_02790 PF00551 Formyl transferase BME96_02795 PF01808 AICARFT/IMPCHase bienzyme BME96_02795 PF02142 MGS-like domain BME96_02800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BME96_02800 PF02843 Phosphoribosylglycinamide synthetase, C domain BME96_02800 PF02844 Phosphoribosylglycinamide synthetase, N domain BME96_02805 PF13382 Adenine deaminase C-terminal domain BME96_02805 PF01979 Amidohydrolase family BME96_02810 PF17479 Protein of unknown function (DUF3048) C-terminal domain BME96_02810 PF11258 Protein of unknown function (DUF3048) N-terminal domain BME96_02815 PF01371 Trp repressor protein BME96_02820 PF01026 TatD related DNase BME96_02825 PF01884 PcrB family BME96_02830 PF00580 UvrD/REP helicase N-terminal domain BME96_02830 PF13361 UvrD-like helicase C-terminal domain BME96_02835 PF12826 Helix-hairpin-helix motif BME96_02835 PF03120 NAD-dependent DNA ligase OB-fold domain BME96_02835 PF01653 NAD-dependent DNA ligase adenylation domain BME96_02835 PF00533 BRCA1 C Terminus (BRCT) domain BME96_02835 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BME96_02840 PF07537 CamS sex pheromone cAM373 precursor BME96_02845 PF00171 Aldehyde dehydrogenase family BME96_02850 PF18801 response regulator aspartate phosphatase H, N terminal BME96_02855 PF00474 Sodium:solute symporter family BME96_02860 PF02686 Glu-tRNAGln amidotransferase C subunit BME96_02865 PF01425 Amidase BME96_02870 PF02637 GatB domain BME96_02870 PF02934 GatB/GatE catalytic domain BME96_02875 PF00781 Diacylglycerol kinase catalytic domain BME96_02880 PF01938 TRAM domain BME96_02880 PF05958 tRNA (Uracil-5-)-methyltransferase BME96_02885 PF01546 Peptidase family M20/M25/M40 BME96_02885 PF07687 Peptidase dimerisation domain BME96_02890 PF17755 UvrA DNA-binding domain BME96_02890 PF00005 ABC transporter BME96_02890 PF17760 UvrA interaction domain BME96_02900 PF01040 UbiA prenyltransferase family BME96_02915 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BME96_02920 PF00510 Cytochrome c oxidase subunit III BME96_02925 PF00115 Cytochrome C and Quinol oxidase polypeptide I BME96_02930 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BME96_02930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BME96_02935 PF00912 Transglycosylase BME96_02935 PF00905 Penicillin binding protein transpeptidase domain BME96_02940 PF00313 'Cold-shock' DNA-binding domain BME96_02945 PF00892 EamA-like transporter family BME96_02950 PF00392 Bacterial regulatory proteins, gntR family BME96_02950 PF00155 Aminotransferase class I and II BME96_02955 PF01040 UbiA prenyltransferase family BME96_02965 PF12728 Helix-turn-helix domain BME96_02975 PF00881 Nitroreductase family BME96_02980 PF01479 S4 domain BME96_02980 PF00849 RNA pseudouridylate synthase BME96_02985 PF03576 Peptidase family S58 BME96_02990 PF00245 Alkaline phosphatase BME96_02995 PF00578 AhpC/TSA family BME96_03000 PF16326 ABC transporter C-terminal domain BME96_03000 PF12848 ABC transporter BME96_03000 PF00005 ABC transporter BME96_03025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_03025 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_03030 PF00209 Sodium:neurotransmitter symporter family BME96_03035 PF03553 Na+/H+ antiporter family BME96_03040 PF00155 Aminotransferase class I and II BME96_03045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_03045 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_03045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_03050 PF00171 Aldehyde dehydrogenase family BME96_03055 PF16653 Saccharopine dehydrogenase C-terminal domain BME96_03055 PF03435 Saccharopine dehydrogenase NADP binding domain BME96_03060 PF09339 IclR helix-turn-helix domain BME96_03060 PF01614 Bacterial transcriptional regulator BME96_03070 PF00171 Aldehyde dehydrogenase family BME96_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_03075 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_03080 PF02515 CoA-transferase family III BME96_03090 PF00188 Cysteine-rich secretory protein family BME96_03095 PF04960 Glutaminase BME96_03100 PF02586 SOS response associated peptidase (SRAP) BME96_03105 PF01235 Sodium:alanine symporter family BME96_03115 PF03631 Virulence factor BrkB BME96_03125 PF07690 Major Facilitator Superfamily BME96_03135 PF14167 YfkD-like protein BME96_03140 PF13726 Na+-H+ antiporter family BME96_03140 PF03553 Na+/H+ antiporter family BME96_03145 PF01522 Polysaccharide deacetylase BME96_03150 PF03707 Bacterial signalling protein N terminal repeat BME96_03150 PF00563 EAL domain BME96_03150 PF00990 Diguanylate cyclase, GGDEF domain BME96_03160 PF13193 AMP-binding enzyme C-terminal domain BME96_03160 PF00501 AMP-binding enzyme BME96_03165 PF17871 AAA lid domain BME96_03165 PF10431 C-terminal, D2-small domain, of ClpB protein BME96_03165 PF07724 AAA domain (Cdc48 subfamily) BME96_03165 PF00004 ATPase family associated with various cellular activities (AAA) BME96_03170 PF00753 Metallo-beta-lactamase superfamily BME96_03170 PF03772 Competence protein BME96_03175 PF07729 FCD domain BME96_03175 PF00392 Bacterial regulatory proteins, gntR family BME96_03180 PF00005 ABC transporter BME96_03190 PF12679 ABC-2 family transporter protein BME96_03195 PF00005 ABC transporter BME96_03195 PF13732 Domain of unknown function (DUF4162) BME96_03200 PF13396 Phospholipase_D-nuclease N-terminal BME96_03200 PF13091 PLD-like domain BME96_03210 PF07702 UTRA domain BME96_03210 PF00392 Bacterial regulatory proteins, gntR family BME96_03230 PF01370 NAD dependent epimerase/dehydratase family BME96_03230 PF08338 Domain of unknown function (DUF1731) BME96_03235 PF02631 RecX family BME96_03240 PF00106 short chain dehydrogenase BME96_03245 PF08838 Protein of unknown function (DUF1811) BME96_03250 PF04307 LexA-binding, inner membrane-associated putative hydrolase BME96_03255 PF00730 HhH-GPD superfamily base excision DNA repair protein BME96_03255 PF14815 NUDIX domain BME96_03265 PF04167 Protein of unknown function (DUF402) BME96_03270 PF00005 ABC transporter BME96_03270 PF00664 ABC transporter transmembrane region BME96_03275 PF00202 Aminotransferase class-III BME96_03280 PF07885 Ion channel BME96_03285 PF00578 AhpC/TSA family BME96_03290 PF02397 Bacterial sugar transferase BME96_03295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BME96_03295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BME96_03300 PF01475 Ferric uptake regulator family BME96_03305 PF04715 Anthranilate synthase component I, N terminal region BME96_03305 PF00425 chorismate binding enzyme BME96_03310 PF00117 Glutamine amidotransferase class-I BME96_03315 PF11023 Zinc-ribbon containing domain BME96_03320 PF14540 Nucleotidyltransferase-like BME96_03320 PF18576 Helix-turn-helix domain BME96_03420 PF06874 Firmicute fructose-1,6-bisphosphatase BME96_03430 PF03176 MMPL family BME96_03440 PF02545 Maf-like protein BME96_03450 PF01638 HxlR-like helix-turn-helix BME96_03460 PF03358 NADPH-dependent FMN reductase BME96_03465 PF00221 Aromatic amino acid lyase BME96_03480 PF01266 FAD dependent oxidoreductase BME96_03490 PF01368 DHH family BME96_03490 PF02833 DHHA2 domain BME96_03500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_03505 PF08179 Small acid-soluble spore protein P family BME96_03510 PF11122 Inner spore coat protein D BME96_03515 PF06908 YspA SLOG family BME96_03545 PF00583 Acetyltransferase (GNAT) family BME96_03550 PF01177 Asp/Glu/Hydantoin racemase BME96_03570 PF02254 TrkA-N domain BME96_03570 PF07885 Ion channel BME96_03600 PF00291 Pyridoxal-phosphate dependent enzyme BME96_03605 PF06013 Proteins of 100 residues with WXG BME96_03610 PF08817 WXG100 protein secretion system (Wss), protein YukD BME96_03615 PF10140 WXG100 protein secretion system (Wss), protein YukC BME96_03620 PF12538 DNA transporter BME96_03620 PF01580 FtsK/SpoIIIE family BME96_03630 PF17355 Family of unknown function (DUF5383) BME96_03635 PF16888 Domain of unknown function (DUF5082) BME96_03645 PF14449 Pre-toxin TG BME96_03645 PF04740 LXG domain of WXG superfamily BME96_03645 PF14431 YwqJ-like deaminase BME96_03665 PF04740 LXG domain of WXG superfamily BME96_03665 PF14449 Pre-toxin TG BME96_03665 PF14431 YwqJ-like deaminase BME96_03735 PF07690 Major Facilitator Superfamily BME96_03740 PF01472 PUA domain BME96_03740 PF00696 Amino acid kinase family BME96_03745 PF00171 Aldehyde dehydrogenase family BME96_03750 PF01588 Putative tRNA binding domain BME96_03760 PF00582 Universal stress protein family BME96_03765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_03770 PF01565 FAD binding domain BME96_03770 PF02913 FAD linked oxidases, C-terminal domain BME96_03785 PF01063 Amino-transferase class IV BME96_03795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BME96_03795 PF01842 ACT domain BME96_03795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BME96_03800 PF00266 Aminotransferase class-V BME96_03810 PF01717 Cobalamin-independent synthase, Catalytic domain BME96_03830 PF06271 RDD family BME96_03835 PF14480 DNA polymerase III polC-type N-terminus I BME96_03835 PF11490 DNA polymerase III polC-type N-terminus II BME96_03835 PF07733 Bacterial DNA polymerase III alpha NTPase domain BME96_03835 PF02811 PHP domain BME96_03835 PF00929 Exonuclease BME96_03835 PF01336 OB-fold nucleic acid binding domain BME96_03835 PF14579 Helix-hairpin-helix motif BME96_03835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BME96_03840 PF01343 Peptidase family S49 BME96_03845 PF06271 RDD family BME96_03850 PF13193 AMP-binding enzyme C-terminal domain BME96_03850 PF00501 AMP-binding enzyme BME96_03860 PF17334 Minor curli fiber component A BME96_03875 PF00156 Phosphoribosyl transferase domain BME96_03880 PF00860 Permease family BME96_03885 PF07690 Major Facilitator Superfamily BME96_03890 PF13536 Putative multidrug resistance efflux transporter BME96_03900 PF14140 YpzI-like protein BME96_03905 PF00107 Zinc-binding dehydrogenase BME96_03905 PF08240 Alcohol dehydrogenase GroES-like domain BME96_03915 PF07993 Male sterility protein BME96_03915 PF00550 Phosphopantetheine attachment site BME96_03925 PF07687 Peptidase dimerisation domain BME96_03925 PF01546 Peptidase family M20/M25/M40 BME96_03935 PF01061 ABC-2 type transporter BME96_03940 PF12867 DinB superfamily BME96_03950 PF02774 Semialdehyde dehydrogenase, dimerisation domain BME96_03950 PF01118 Semialdehyde dehydrogenase, NAD binding domain BME96_03955 PF01960 ArgJ family BME96_03960 PF00696 Amino acid kinase family BME96_03965 PF00202 Aminotransferase class-III BME96_03970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BME96_03970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BME96_03970 PF02142 MGS-like domain BME96_03975 PF00326 Prolyl oligopeptidase family BME96_03975 PF07676 WD40-like Beta Propeller Repeat BME96_03980 PF02224 Cytidylate kinase BME96_03985 PF01063 Amino-transferase class IV BME96_04005 PF08331 Domain of unknown function (DUF1730) BME96_04010 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BME96_04010 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BME96_04015 PF12671 Putative amidase domain BME96_04020 PF00588 SpoU rRNA Methylase family BME96_04025 PF00676 Dehydrogenase E1 component BME96_04025 PF16870 2-oxoglutarate dehydrogenase C-terminal BME96_04025 PF02779 Transketolase, pyrimidine binding domain BME96_04030 PF02817 e3 binding domain BME96_04030 PF00364 Biotin-requiring enzyme BME96_04030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BME96_04035 PF07662 Na+ dependent nucleoside transporter C-terminus BME96_04035 PF01773 Na+ dependent nucleoside transporter N-terminus BME96_04040 PF00171 Aldehyde dehydrogenase family BME96_04045 PF01554 MatE BME96_04050 PF03033 Glycosyltransferase family 28 N-terminal domain BME96_04050 PF04101 Glycosyltransferase family 28 C-terminal domain BME96_04060 PF03845 Spore germination protein BME96_04065 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_04070 PF00484 Carbonic anhydrase BME96_04080 PF00005 ABC transporter BME96_04080 PF00664 ABC transporter transmembrane region BME96_04085 PF00664 ABC transporter transmembrane region BME96_04085 PF00005 ABC transporter BME96_04090 PF13180 PDZ domain BME96_04090 PF17820 PDZ domain BME96_04105 PF04542 Sigma-70 region 2 BME96_04115 PF14148 YhdB-like protein BME96_04125 PF02664 S-Ribosylhomocysteinase (LuxS) BME96_04130 PF00291 Pyridoxal-phosphate dependent enzyme BME96_04135 PF01053 Cys/Met metabolism PLP-dependent enzyme BME96_04140 PF01546 Peptidase family M20/M25/M40 BME96_04140 PF07687 Peptidase dimerisation domain BME96_04145 PF00106 short chain dehydrogenase BME96_04155 PF00005 ABC transporter BME96_04160 PF00557 Metallopeptidase family M24 BME96_04175 PF03591 AzlC protein BME96_04185 PF16916 Dimerisation domain of Zinc Transporter BME96_04185 PF01545 Cation efflux family BME96_04195 PF11700 Vacuole effluxer Atg22 like BME96_04205 PF00206 Lyase BME96_04205 PF10415 Fumarase C C-terminus BME96_04210 PF00269 Small, acid-soluble spore proteins, alpha/beta type BME96_04215 PF03459 TOBE domain BME96_04215 PF00005 ABC transporter BME96_04215 PF17912 MalK OB fold domain BME96_04220 PF13556 PucR C-terminal helix-turn-helix domain BME96_04225 PF06133 Control of competence regulator ComK, YlbF/YmcA BME96_04230 PF00378 Enoyl-CoA hydratase/isomerase BME96_04235 PF14120 YhzD-like protein BME96_04240 PF00005 ABC transporter BME96_04240 PF13732 Domain of unknown function (DUF4162) BME96_04250 PF00149 Calcineurin-like phosphoesterase BME96_04255 PF13514 AAA domain BME96_04265 PF01336 OB-fold nucleic acid binding domain BME96_04265 PF01966 HD domain BME96_04285 PF11667 Putative zincin peptidase BME96_04295 PF12802 MarR family BME96_04300 PF00571 CBS domain BME96_04300 PF00005 ABC transporter BME96_04305 PF00528 Binding-protein-dependent transport system inner membrane component BME96_04310 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BME96_04315 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BME96_04320 PF12732 YtxH-like protein BME96_04325 PF17099 Tryptophan transporter TrpP BME96_04330 PF01230 HIT domain BME96_04335 PF00005 ABC transporter BME96_04340 PF05975 Bacterial ABC transporter protein EcsB BME96_04345 PF01546 Peptidase family M20/M25/M40 BME96_04345 PF07687 Peptidase dimerisation domain BME96_04350 PF00210 Ferritin-like domain BME96_04360 PF07690 Major Facilitator Superfamily BME96_04370 PF00672 HAMP domain BME96_04370 PF07730 Histidine kinase BME96_04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_04375 PF00196 Bacterial regulatory proteins, luxR family BME96_04375 PF00072 Response regulator receiver domain BME96_04380 PF00665 Integrase core domain BME96_04380 PF13276 HTH-like domain BME96_04380 PF13333 Integrase core domain BME96_04395 PF03992 Antibiotic biosynthesis monooxygenase BME96_04400 PF00905 Penicillin binding protein transpeptidase domain BME96_04400 PF00912 Transglycosylase BME96_04405 PF01208 Uroporphyrinogen decarboxylase (URO-D) BME96_04420 PF08439 Oligopeptidase F BME96_04420 PF01432 Peptidase family M3 BME96_04430 PF01609 Transposase DDE domain BME96_04435 PF12706 Beta-lactamase superfamily domain BME96_04440 PF03099 Biotin/lipoate A/B protein ligase family BME96_04440 PF10437 Bacterial lipoate protein ligase C-terminus BME96_04445 PF13193 AMP-binding enzyme C-terminal domain BME96_04445 PF00501 AMP-binding enzyme BME96_04455 PF09335 SNARE associated Golgi protein BME96_04460 PF10502 Signal peptidase, peptidase S26 BME96_04465 PF12705 PD-(D/E)XK nuclease superfamily BME96_04470 PF12705 PD-(D/E)XK nuclease superfamily BME96_04470 PF00580 UvrD/REP helicase N-terminal domain BME96_04470 PF13361 UvrD-like helicase C-terminal domain BME96_04475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BME96_04475 PF09125 Cytochrome C oxidase subunit II, transmembrane BME96_04480 PF00115 Cytochrome C and Quinol oxidase polypeptide I BME96_04495 PF10676 Spore germination protein gerPA/gerPF BME96_04510 PF10737 Spore germination protein GerPC BME96_04515 PF10803 Spore germination GerPB BME96_04525 PF04235 Protein of unknown function (DUF418) BME96_04530 PF00202 Aminotransferase class-III BME96_04535 PF07457 Protein of unknown function (DUF1516) BME96_04545 PF00128 Alpha amylase, catalytic domain BME96_04545 PF16657 Maltogenic Amylase, C-terminal domain BME96_04545 PF02903 Alpha amylase, N-terminal ig-like domain BME96_04560 PF02645 Uncharacterised protein, DegV family COG1307 BME96_04565 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_04565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_04590 PF00326 Prolyl oligopeptidase family BME96_04595 PF01883 Iron-sulfur cluster assembly protein BME96_04605 PF02391 MoaE protein BME96_04615 PF01883 Iron-sulfur cluster assembly protein BME96_04635 PF13545 Crp-like helix-turn-helix domain BME96_04635 PF00027 Cyclic nucleotide-binding domain BME96_04650 PF00325 Bacterial regulatory proteins, crp family BME96_04650 PF00027 Cyclic nucleotide-binding domain BME96_04655 PF02673 Bacitracin resistance protein BacA BME96_04675 PF02608 ABC transporter substrate-binding protein PnrA-like BME96_04680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BME96_04680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BME96_04685 PF00109 Beta-ketoacyl synthase, N-terminal domain BME96_04685 PF02801 Beta-ketoacyl synthase, C-terminal domain BME96_04695 PF12227 Protein of unknown function (DUF3603) BME96_04700 PF00579 tRNA synthetases class I (W and Y) BME96_04715 PF07563 Protein of unknown function (DUF1541) BME96_04725 PF13508 Acetyltransferase (GNAT) domain BME96_04730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_04735 PF03960 ArsC family BME96_04740 PF05389 Negative regulator of genetic competence (MecA) BME96_04750 PF08439 Oligopeptidase F BME96_04750 PF01432 Peptidase family M3 BME96_04760 PF01152 Bacterial-like globin BME96_04765 PF01928 CYTH domain BME96_04770 PF04607 Region found in RelA / SpoT proteins BME96_04775 PF01513 ATP-NAD kinase BME96_04780 PF00849 RNA pseudouridylate synthase BME96_04785 PF00149 Calcineurin-like phosphoesterase BME96_04790 PF00571 CBS domain BME96_04790 PF01769 Divalent cation transporter BME96_04790 PF03448 MgtE intracellular N domain BME96_04820 PF04239 Protein of unknown function (DUF421) BME96_04825 PF13673 Acetyltransferase (GNAT) domain BME96_04835 PF00756 Putative esterase BME96_04840 PF00005 ABC transporter BME96_04840 PF00664 ABC transporter transmembrane region BME96_04845 PF00005 ABC transporter BME96_04845 PF00664 ABC transporter transmembrane region BME96_04890 PF00155 Aminotransferase class I and II BME96_04895 PF09383 NIL domain BME96_04895 PF00005 ABC transporter BME96_04900 PF00528 Binding-protein-dependent transport system inner membrane component BME96_04905 PF03180 NLPA lipoprotein BME96_04935 PF03009 Glycerophosphoryl diester phosphodiesterase family BME96_04975 PF00691 OmpA family BME96_04975 PF13677 Membrane MotB of proton-channel complex MotA/MotB BME96_04990 PF12848 ABC transporter BME96_04990 PF00005 ABC transporter BME96_05010 PF03009 Glycerophosphoryl diester phosphodiesterase family BME96_05015 PF00107 Zinc-binding dehydrogenase BME96_05015 PF16884 N-terminal domain of oxidoreductase BME96_05025 PF13302 Acetyltransferase (GNAT) domain BME96_05030 PF13302 Acetyltransferase (GNAT) domain BME96_05040 PF01494 FAD binding domain BME96_05055 PF02806 Alpha amylase, C-terminal all-beta domain BME96_05055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BME96_05055 PF00128 Alpha amylase, catalytic domain BME96_05060 PF00483 Nucleotidyl transferase BME96_05065 PF00483 Nucleotidyl transferase BME96_05070 PF08323 Starch synthase catalytic domain BME96_05070 PF00534 Glycosyl transferases group 1 BME96_05075 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_05080 PF03845 Spore germination protein BME96_05110 PF13344 Haloacid dehalogenase-like hydrolase BME96_05110 PF00293 NUDIX domain BME96_05115 PF06039 Malate:quinone oxidoreductase (Mqo) BME96_05145 PF01385 Probable transposase BME96_05145 PF12323 Helix-turn-helix domain BME96_05145 PF07282 Putative transposase DNA-binding domain BME96_05155 PF07690 Major Facilitator Superfamily BME96_05175 PF00589 Phage integrase family BME96_05175 PF02899 Phage integrase, N-terminal SAM-like domain BME96_05185 PF02073 Thermophilic metalloprotease (M29) BME96_05190 PF00728 Glycosyl hydrolase family 20, catalytic domain BME96_05190 PF03173 Putative carbohydrate binding domain BME96_05190 PF02838 Glycosyl hydrolase family 20, domain 2 BME96_05200 PF03473 MOSC domain BME96_05200 PF03475 3-alpha domain BME96_05220 PF09335 SNARE associated Golgi protein BME96_05230 PF06271 RDD family BME96_05245 PF12697 Alpha/beta hydrolase family BME96_05250 PF13302 Acetyltransferase (GNAT) domain BME96_05265 PF01385 Probable transposase BME96_05265 PF12323 Helix-turn-helix domain BME96_05265 PF07282 Putative transposase DNA-binding domain BME96_05280 PF00293 NUDIX domain BME96_05305 PF00107 Zinc-binding dehydrogenase BME96_05305 PF08240 Alcohol dehydrogenase GroES-like domain BME96_05310 PF00565 Staphylococcal nuclease homologue BME96_05310 PF05901 Excalibur calcium-binding domain BME96_05320 PF07883 Cupin domain BME96_05330 PF13673 Acetyltransferase (GNAT) domain BME96_05330 PF04229 GrpB protein BME96_05385 PF00005 ABC transporter BME96_05395 PF01497 Periplasmic binding protein BME96_05400 PF01032 FecCD transport family BME96_05405 PF00005 ABC transporter BME96_05410 PF03186 CobD/Cbib protein BME96_05415 PF00155 Aminotransferase class I and II BME96_05425 PF07685 CobB/CobQ-like glutamine amidotransferase domain BME96_05430 PF02654 Cobalamin-5-phosphate synthase BME96_05435 PF00300 Histidine phosphatase superfamily (branch 1) BME96_05445 PF01923 Cobalamin adenosyltransferase BME96_05455 PF01625 Peptide methionine sulfoxide reductase BME96_05455 PF08534 Redoxin BME96_05455 PF01641 SelR domain BME96_05475 PF01546 Peptidase family M20/M25/M40 BME96_05475 PF07687 Peptidase dimerisation domain BME96_05485 PF13378 Enolase C-terminal domain-like BME96_05485 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BME96_05500 PF07517 SecA DEAD-like domain BME96_05500 PF01043 SecA preprotein cross-linking domain BME96_05500 PF07516 SecA Wing and Scaffold domain BME96_05500 PF02810 SEC-C motif BME96_05515 PF07690 Major Facilitator Superfamily BME96_05555 PF01230 HIT domain BME96_05590 PF01209 ubiE/COQ5 methyltransferase family BME96_05605 PF00561 alpha/beta hydrolase fold BME96_05615 PF00293 NUDIX domain BME96_05615 PF13344 Haloacid dehalogenase-like hydrolase BME96_05625 PF09297 NADH pyrophosphatase zinc ribbon domain BME96_05625 PF00293 NUDIX domain BME96_05650 PF00561 alpha/beta hydrolase fold BME96_05675 PF00583 Acetyltransferase (GNAT) family BME96_05715 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_05715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_05715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_05720 PF12802 MarR family BME96_05730 PF01636 Phosphotransferase enzyme family BME96_05775 PF13411 MerR HTH family regulatory protein BME96_05775 PF06445 GyrI-like small molecule binding domain BME96_05780 PF02517 CPBP intramembrane metalloprotease BME96_05800 PF08241 Methyltransferase domain BME96_05810 PF00557 Metallopeptidase family M24 BME96_05840 PF00072 Response regulator receiver domain BME96_05840 PF00486 Transcriptional regulatory protein, C terminal BME96_05845 PF00005 ABC transporter BME96_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_05855 PF00512 His Kinase A (phospho-acceptor) domain BME96_05880 PF04264 YceI-like domain BME96_05890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BME96_05895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BME96_05900 PF01047 MarR family BME96_05905 PF01625 Peptide methionine sulfoxide reductase BME96_05905 PF01641 SelR domain BME96_05920 PF00583 Acetyltransferase (GNAT) family BME96_05950 PF03965 Penicillinase repressor BME96_05955 PF00905 Penicillin binding protein transpeptidase domain BME96_05955 PF05569 BlaR1 peptidase M56 BME96_05970 PF00583 Acetyltransferase (GNAT) family BME96_05975 PF00230 Major intrinsic protein BME96_05980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BME96_05980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BME96_05985 PF02733 Dak1 domain BME96_05990 PF02734 DAK2 domain BME96_06030 PF00005 ABC transporter BME96_06035 PF04397 LytTr DNA-binding domain BME96_06035 PF00072 Response regulator receiver domain BME96_06040 PF12464 Maltose acetyltransferase BME96_06040 PF14602 Hexapeptide repeat of succinyl-transferase BME96_06045 PF03551 Transcriptional regulator PadR-like family BME96_06055 PF08756 YfkB-like domain BME96_06055 PF04055 Radical SAM superfamily BME96_06065 PF12833 Helix-turn-helix domain BME96_06065 PF02805 Metal binding domain of Ada BME96_06070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BME96_06070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BME96_06075 PF02277 Phosphoribosyltransferase BME96_06085 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BME96_06095 PF00012 Hsp70 protein BME96_06110 PF02667 Short chain fatty acid transporter BME96_06120 PF00005 ABC transporter BME96_06130 PF13195 Protein of unknown function (DUF4011) BME96_06130 PF13087 AAA domain BME96_06130 PF13086 AAA domain BME96_06160 PF07669 Eco57I restriction-modification methylase BME96_06175 PF00270 DEAD/DEAH box helicase BME96_06175 PF08494 DEAD/H associated BME96_06175 PF00271 Helicase conserved C-terminal domain BME96_06185 PF00293 NUDIX domain BME96_06195 PF00271 Helicase conserved C-terminal domain BME96_06195 PF04851 Type III restriction enzyme, res subunit BME96_06205 PF13683 Integrase core domain BME96_06205 PF01610 Transposase BME96_06210 PF00171 Aldehyde dehydrogenase family BME96_06235 PF13396 Phospholipase_D-nuclease N-terminal BME96_06235 PF13091 PLD-like domain BME96_06335 PF11188 Protein of unknown function (DUF2975) BME96_06340 PF13443 Cro/C1-type HTH DNA-binding domain BME96_06345 PF05675 Protein of unknown function (DUF817) BME96_06375 PF00300 Histidine phosphatase superfamily (branch 1) BME96_06385 PF00005 ABC transporter BME96_06390 PF02016 LD-carboxypeptidase N-terminal domain BME96_06390 PF17676 LD-carboxypeptidase C-terminal domain BME96_06395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BME96_06430 PF00274 Fructose-bisphosphate aldolase class-I BME96_06435 PF08240 Alcohol dehydrogenase GroES-like domain BME96_06435 PF00107 Zinc-binding dehydrogenase BME96_06440 PF01557 Fumarylacetoacetate (FAA) hydrolase family BME96_06445 PF13426 PAS domain BME96_06445 PF08447 PAS fold BME96_06445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_06450 PF02229 Transcriptional Coactivator p15 (PC4) BME96_06490 PF00575 S1 RNA binding domain BME96_06500 PF00171 Aldehyde dehydrogenase family BME96_06510 PF00266 Aminotransferase class-V BME96_06515 PF04199 Putative cyclase BME96_06520 PF03301 Tryptophan 2,3-dioxygenase BME96_06525 PF00209 Sodium:neurotransmitter symporter family BME96_06530 PF00072 Response regulator receiver domain BME96_06530 PF00486 Transcriptional regulatory protein, C terminal BME96_06535 PF00672 HAMP domain BME96_06535 PF13426 PAS domain BME96_06535 PF00512 His Kinase A (phospho-acceptor) domain BME96_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_06545 PF01435 Peptidase family M48 BME96_06570 PF00144 Beta-lactamase BME96_06575 PF13673 Acetyltransferase (GNAT) domain BME96_06575 PF04229 GrpB protein BME96_06595 PF14145 YrhK-like protein BME96_06600 PF00248 Aldo/keto reductase family BME96_06610 PF04238 Protein of unknown function (DUF420) BME96_06615 PF01209 ubiE/COQ5 methyltransferase family BME96_06625 PF00561 alpha/beta hydrolase fold BME96_06625 PF08386 TAP-like protein BME96_06655 PF01740 STAS domain BME96_06660 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_06665 PF00440 Bacterial regulatory proteins, tetR family BME96_06670 PF07690 Major Facilitator Superfamily BME96_06675 PF00403 Heavy-metal-associated domain BME96_06690 PF01551 Peptidase family M23 BME96_06690 PF10145 Phage-related minor tail protein BME96_06690 PF01464 Transglycosylase SLT domain BME96_06695 PF04239 Protein of unknown function (DUF421) BME96_06710 PF12323 Helix-turn-helix domain BME96_06710 PF01385 Probable transposase BME96_06710 PF07282 Putative transposase DNA-binding domain BME96_06715 PF13302 Acetyltransferase (GNAT) domain BME96_06725 PF03928 Haem-degrading BME96_06730 PF00107 Zinc-binding dehydrogenase BME96_06730 PF08240 Alcohol dehydrogenase GroES-like domain BME96_06740 PF00375 Sodium:dicarboxylate symporter family BME96_06775 PF02660 Glycerol-3-phosphate acyltransferase BME96_06780 PF00266 Aminotransferase class-V BME96_06785 PF00884 Sulfatase BME96_06790 PF01022 Bacterial regulatory protein, arsR family BME96_06795 PF02040 Arsenical pump membrane protein BME96_06800 PF01451 Low molecular weight phosphotyrosine protein phosphatase BME96_06805 PF02901 Pyruvate formate lyase-like BME96_06805 PF01228 Glycine radical BME96_06810 PF04055 Radical SAM superfamily BME96_06835 PF01544 CorA-like Mg2+ transporter protein BME96_06845 PF01872 RibD C-terminal domain BME96_06845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BME96_06850 PF00677 Lumazine binding domain BME96_06855 PF00925 GTP cyclohydrolase II BME96_06855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BME96_06860 PF00885 6,7-dimethyl-8-ribityllumazine synthase BME96_06865 PF10710 Protein of unknown function (DUF2512) BME96_06870 PF02535 ZIP Zinc transporter BME96_06880 PF14045 YIEGIA protein BME96_06885 PF02600 Disulfide bond formation protein DsbB BME96_06890 PF13462 Thioredoxin BME96_06895 PF01022 Bacterial regulatory protein, arsR family BME96_06900 PF00403 Heavy-metal-associated domain BME96_06905 PF00375 Sodium:dicarboxylate symporter family BME96_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_06920 PF16736 Single Cache-like BME96_06920 PF00512 His Kinase A (phospho-acceptor) domain BME96_06920 PF00989 PAS fold BME96_06925 PF00486 Transcriptional regulatory protein, C terminal BME96_06925 PF00072 Response regulator receiver domain BME96_06935 PF07732 Multicopper oxidase BME96_06935 PF07731 Multicopper oxidase BME96_06935 PF00394 Multicopper oxidase BME96_06940 PF16658 Class II release factor RF3, C-terminal domain BME96_06940 PF03144 Elongation factor Tu domain 2 BME96_06940 PF00009 Elongation factor Tu GTP binding domain BME96_06945 PF13302 Acetyltransferase (GNAT) domain BME96_06950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_06960 PF11132 Transcriptional regulator protein (SplA) BME96_06980 PF00741 Gas vesicle protein BME96_06990 PF07728 AAA domain (dynein-related subfamily) BME96_07010 PF00741 Gas vesicle protein BME96_07015 PF00741 Gas vesicle protein BME96_07015 PF05121 Gas vesicle protein K BME96_07020 PF00741 Gas vesicle protein BME96_07050 PF12728 Helix-turn-helix domain BME96_07055 PF00916 Sulfate permease family BME96_07055 PF01740 STAS domain BME96_07060 PF00582 Universal stress protein family BME96_07065 PF13529 Peptidase_C39 like family BME96_07080 PF03992 Antibiotic biosynthesis monooxygenase BME96_07085 PF13426 PAS domain BME96_07085 PF01740 STAS domain BME96_07105 PF01979 Amidohydrolase family BME96_07110 PF01699 Sodium/calcium exchanger protein BME96_07115 PF05154 TM2 domain BME96_07120 PF03699 Uncharacterised protein family (UPF0182) BME96_07135 PF10026 Predicted Zn-dependent protease (DUF2268) BME96_07145 PF14069 Stage VI sporulation protein F BME96_07155 PF00854 POT family BME96_07170 PF03845 Spore germination protein BME96_07175 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_07185 PF03851 UV-endonuclease UvdE BME96_07190 PF00571 CBS domain BME96_07210 PF00375 Sodium:dicarboxylate symporter family BME96_07225 PF14667 Polysaccharide biosynthesis C-terminal domain BME96_07225 PF01943 Polysaccharide biosynthesis protein BME96_07230 PF01479 S4 domain BME96_07230 PF00849 RNA pseudouridylate synthase BME96_07245 PF01636 Phosphotransferase enzyme family BME96_07250 PF14165 YtzH-like protein BME96_07255 PF02390 Putative methyltransferase BME96_07260 PF00753 Metallo-beta-lactamase superfamily BME96_07270 PF05343 M42 glutamyl aminopeptidase BME96_07275 PF01931 Protein of unknown function DUF84 BME96_07280 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ BME96_07285 PF00085 Thioredoxin BME96_07290 PF07285 Protein of unknown function (DUF1444) BME96_07295 PF01588 Putative tRNA binding domain BME96_07295 PF14794 Domain of unknown function (DUF4479) BME96_07300 PF09397 Ftsk gamma domain BME96_07300 PF01580 FtsK/SpoIIIE family BME96_07300 PF17854 FtsK alpha domain BME96_07310 PF08245 Mur ligase middle domain BME96_07310 PF02875 Mur ligase family, glutamate ligase domain BME96_07310 PF01225 Mur ligase family, catalytic domain BME96_07320 PF12732 YtxH-like protein BME96_07325 PF00793 DAHP synthetase I family BME96_07325 PF01817 Chorismate mutase type II BME96_07330 PF00356 Bacterial regulatory proteins, lacI family BME96_07335 PF01618 MotA/TolQ/ExbB proton channel family BME96_07340 PF00691 OmpA family BME96_07340 PF13677 Membrane MotB of proton-channel complex MotA/MotB BME96_07345 PF00850 Histone deacetylase domain BME96_07350 PF00571 CBS domain BME96_07355 PF00583 Acetyltransferase (GNAT) family BME96_07360 PF00912 Transglycosylase BME96_07360 PF00905 Penicillin binding protein transpeptidase domain BME96_07365 PF00579 tRNA synthetases class I (W and Y) BME96_07365 PF01479 S4 domain BME96_07370 PF00163 Ribosomal protein S4/S9 N-terminal domain BME96_07370 PF01479 S4 domain BME96_07375 PF00990 Diguanylate cyclase, GGDEF domain BME96_07380 PF13185 GAF domain BME96_07385 PF00440 Bacterial regulatory proteins, tetR family BME96_07390 PF06160 Septation ring formation regulator, EzrA BME96_07395 PF00266 Aminotransferase class-V BME96_07400 PF02568 Thiamine biosynthesis protein (ThiI) BME96_07400 PF02926 THUMP domain BME96_07405 PF00269 Small, acid-soluble spore proteins, alpha/beta type BME96_07410 PF01513 ATP-NAD kinase BME96_07420 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BME96_07425 PF08534 Redoxin BME96_07430 PF02384 N-6 DNA Methylase BME96_07435 PF00871 Acetokinase family BME96_07440 PF00994 Probable molybdopterin binding domain BME96_07445 PF00582 Universal stress protein family BME96_07455 PF04012 PspA/IM30 family BME96_07475 PF12706 Beta-lactamase superfamily domain BME96_07495 PF00437 Type II/IV secretion system protein BME96_07500 PF00437 Type II/IV secretion system protein BME96_07505 PF00482 Type II secretion system (T2SS), protein F BME96_07515 PF01478 Type IV leader peptidase family BME96_07515 PF06750 Bacterial Peptidase A24 N-terminal domain BME96_07540 PF03061 Thioesterase superfamily BME96_07540 PF07085 DRTGG domain BME96_07540 PF00392 Bacterial regulatory proteins, gntR family BME96_07540 PF00571 CBS domain BME96_07550 PF02272 DHHA1 domain BME96_07550 PF01368 DHH family BME96_07565 PF14034 Sporulation protein YtrH BME96_07570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BME96_07570 PF07733 Bacterial DNA polymerase III alpha NTPase domain BME96_07570 PF14579 Helix-hairpin-helix motif BME96_07570 PF02811 PHP domain BME96_07570 PF01336 OB-fold nucleic acid binding domain BME96_07575 PF00390 Malic enzyme, N-terminal domain BME96_07575 PF03949 Malic enzyme, NAD binding domain BME96_07580 PF07729 FCD domain BME96_07580 PF00392 Bacterial regulatory proteins, gntR family BME96_07585 PF01039 Carboxyl transferase domain BME96_07590 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BME96_07595 PF00365 Phosphofructokinase BME96_07600 PF02887 Pyruvate kinase, alpha/beta domain BME96_07600 PF00224 Pyruvate kinase, barrel domain BME96_07600 PF00391 PEP-utilising enzyme, mobile domain BME96_07605 PF04186 FxsA cytoplasmic membrane protein BME96_07610 PF01594 AI-2E family transporter BME96_07615 PF00285 Citrate synthase, C-terminal domain BME96_07620 PF00180 Isocitrate/isopropylmalate dehydrogenase BME96_07625 PF00056 lactate/malate dehydrogenase, NAD binding domain BME96_07625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BME96_07635 PF00486 Transcriptional regulatory protein, C terminal BME96_07635 PF00072 Response regulator receiver domain BME96_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_07640 PF00989 PAS fold BME96_07640 PF00512 His Kinase A (phospho-acceptor) domain BME96_07640 PF16736 Single Cache-like BME96_07645 PF01367 5'-3' exonuclease, C-terminal SAM fold BME96_07645 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BME96_07645 PF00476 DNA polymerase family A BME96_07650 PF06827 Zinc finger found in FPG and IleRS BME96_07650 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BME96_07650 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BME96_07655 PF01121 Dephospho-CoA kinase BME96_07660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BME96_07660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BME96_07665 PF02675 S-adenosylmethionine decarboxylase BME96_07675 PF03477 ATP cone domain BME96_07680 PF07261 Replication initiation and membrane attachment BME96_07685 PF01695 IstB-like ATP binding protein BME96_07685 PF07319 Primosomal protein DnaI N-terminus BME96_07690 PF08812 YtxC-like family BME96_07695 PF02824 TGS domain BME96_07695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BME96_07695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BME96_07695 PF03129 Anticodon binding domain BME96_07700 PF00707 Translation initiation factor IF-3, C-terminal domain BME96_07700 PF05198 Translation initiation factor IF-3, N-terminal domain BME96_07705 PF01632 Ribosomal protein L35 BME96_07710 PF00453 Ribosomal protein L20 BME96_07715 PF06961 Protein of unknown function (DUF1294) BME96_07720 PF09335 SNARE associated Golgi protein BME96_07735 PF05343 M42 glutamyl aminopeptidase BME96_07740 PF01464 Transglycosylase SLT domain BME96_07745 PF00005 ABC transporter BME96_07765 PF14098 Small, acid-soluble spore protein I BME96_07770 PF08032 RNA 2'-O ribose methyltransferase substrate binding BME96_07770 PF00588 SpoU rRNA Methylase family BME96_07775 PF01409 tRNA synthetases class II core domain (F) BME96_07775 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BME96_07780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BME96_07780 PF01588 Putative tRNA binding domain BME96_07780 PF03147 Ferredoxin-fold anticodon binding domain BME96_07780 PF03484 tRNA synthetase B5 domain BME96_07780 PF03483 B3/4 domain BME96_07785 PF11858 Domain of unknown function (DUF3378) BME96_07785 PF01351 Ribonuclease HII BME96_07790 PF05164 Cell division protein ZapA BME96_07795 PF02674 Colicin V production protein BME96_07800 PF14791 DNA polymerase beta thumb BME96_07800 PF02811 PHP domain BME96_07800 PF14716 Helix-hairpin-helix domain BME96_07805 PF01713 Smr domain BME96_07805 PF00488 MutS domain V BME96_07810 PF03994 Domain of Unknown Function (DUF350) BME96_07815 PF00501 AMP-binding enzyme BME96_07815 PF13193 AMP-binding enzyme C-terminal domain BME96_07820 PF00440 Bacterial regulatory proteins, tetR family BME96_07820 PF08359 YsiA-like protein, C-terminal region BME96_07825 PF00378 Enoyl-CoA hydratase/isomerase BME96_07830 PF01012 Electron transfer flavoprotein domain BME96_07835 PF00766 Electron transfer flavoprotein FAD-binding domain BME96_07835 PF01012 Electron transfer flavoprotein domain BME96_07840 PF00085 Thioredoxin BME96_07845 PF02151 UvrB/uvrC motif BME96_07845 PF01541 GIY-YIG catalytic domain BME96_07845 PF08459 UvrC Helix-hairpin-helix N-terminal BME96_07850 PF10702 Protein of unknown function (DUF2507) BME96_07855 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BME96_07860 PF00890 FAD binding domain BME96_07860 PF02910 Fumarate reductase flavoprotein C-term BME96_07865 PF13183 4Fe-4S dicluster domain BME96_07865 PF13085 2Fe-2S iron-sulfur cluster binding domain BME96_07870 PF03061 Thioesterase superfamily BME96_07875 PF00196 Bacterial regulatory proteins, luxR family BME96_07880 PF01047 MarR family BME96_07885 PF01177 Asp/Glu/Hydantoin racemase BME96_07890 PF10646 Sporulation and spore germination BME96_07895 PF01138 3' exoribonuclease family, domain 1 BME96_07895 PF03725 3' exoribonuclease family, domain 2 BME96_07900 PF01725 Ham1 family BME96_07905 PF12850 Calcineurin-like phosphoesterase superfamily domain BME96_07930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BME96_07930 PF05697 Bacterial trigger factor protein (TF) BME96_07930 PF05698 Bacterial trigger factor protein (TF) C-terminus BME96_07935 PF06689 ClpX C4-type zinc finger BME96_07935 PF10431 C-terminal, D2-small domain, of ClpB protein BME96_07935 PF07724 AAA domain (Cdc48 subfamily) BME96_07940 PF02190 ATP-dependent protease La (LON) substrate-binding domain BME96_07940 PF05362 Lon protease (S16) C-terminal proteolytic domain BME96_07940 PF00004 ATPase family associated with various cellular activities (AAA) BME96_07945 PF01926 50S ribosome-binding GTPase BME96_07950 PF00497 Bacterial extracellular solute-binding proteins, family 3 BME96_07955 PF00528 Binding-protein-dependent transport system inner membrane component BME96_07960 PF00005 ABC transporter BME96_07970 PF01488 Shikimate / quinate 5-dehydrogenase BME96_07970 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BME96_07970 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BME96_07975 PF01578 Cytochrome C assembly protein BME96_07980 PF03900 Porphobilinogen deaminase, C-terminal domain BME96_07980 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BME96_07990 PF00490 Delta-aminolevulinic acid dehydratase BME96_07995 PF00202 Aminotransferase class-III BME96_08000 PF01476 LysM domain BME96_08000 PF01476 LysM domain BME96_08015 PF00133 tRNA synthetases class I (I, L, M and V) BME96_08015 PF08264 Anticodon-binding domain of tRNA BME96_08015 PF10458 Valyl tRNA synthetase tRNA binding arm BME96_08025 PF18030 RimK PreATP-grasp domain BME96_08025 PF08443 RimK-like ATP-grasp domain BME96_08030 PF08245 Mur ligase middle domain BME96_08030 PF02875 Mur ligase family, glutamate ligase domain BME96_08040 PF04002 RadC-like JAB domain BME96_08045 PF02899 Phage integrase, N-terminal SAM-like domain BME96_08045 PF00589 Phage integrase family BME96_08050 PF00589 Phage integrase family BME96_08075 PF04085 rod shape-determining protein MreC BME96_08085 PF03775 Septum formation inhibitor MinC, C-terminal domain BME96_08090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BME96_08100 PF02163 Peptidase family M50 BME96_08105 PF00829 Ribosomal prokaryotic L21 protein BME96_08110 PF04327 Cysteine protease Prp BME96_08115 PF01016 Ribosomal L27 protein BME96_08125 PF01018 GTP1/OBG BME96_08125 PF01926 50S ribosome-binding GTPase BME96_08125 PF09269 Domain of unknown function (DUF1967) BME96_08130 PF00800 Prephenate dehydratase BME96_08130 PF01842 ACT domain BME96_08135 PF01476 LysM domain BME96_08145 PF02540 NAD synthase BME96_08155 PF01709 Transcriptional regulator BME96_08160 PF01330 RuvA N terminal domain BME96_08160 PF07499 RuvA, C-terminal domain BME96_08165 PF17864 RuvB AAA lid domain BME96_08165 PF05496 Holliday junction DNA helicase RuvB P-loop domain BME96_08165 PF05491 RuvB C-terminal winged helix domain BME96_08175 PF02547 Queuosine biosynthesis protein BME96_08180 PF01702 Queuine tRNA-ribosyltransferase BME96_08185 PF02699 Preprotein translocase subunit BME96_08190 PF12670 Protein of unknown function (DUF3792) BME96_08195 PF03600 Citrate transporter BME96_08205 PF01943 Polysaccharide biosynthesis protein BME96_08205 PF14667 Polysaccharide biosynthesis C-terminal domain BME96_08215 PF02355 Protein export membrane protein BME96_08215 PF07549 SecD/SecF GG Motif BME96_08220 PF06305 Lipopolysaccharide assembly protein A domain BME96_08225 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BME96_08225 PF02272 DHHA1 domain BME96_08225 PF01368 DHH family BME96_08225 PF17768 RecJ OB domain BME96_08230 PF00156 Phosphoribosyl transferase domain BME96_08235 PF13291 ACT domain BME96_08235 PF04607 Region found in RelA / SpoT proteins BME96_08235 PF02824 TGS domain BME96_08240 PF02580 D-Tyr-tRNA(Tyr) deacylase BME96_08245 PF08239 Bacterial SH3 domain BME96_08245 PF01520 N-acetylmuramoyl-L-alanine amidase BME96_08250 PF03129 Anticodon binding domain BME96_08250 PF13393 Histidyl-tRNA synthetase BME96_08255 PF01336 OB-fold nucleic acid binding domain BME96_08255 PF00152 tRNA synthetases class II (D, K and N) BME96_08255 PF02938 GAD domain BME96_08270 PF05496 Holliday junction DNA helicase RuvB P-loop domain BME96_08270 PF12002 MgsA AAA+ ATPase C terminal BME96_08270 PF16193 AAA C-terminal domain BME96_08275 PF02082 Transcriptional regulator BME96_08280 PF00266 Aminotransferase class-V BME96_08295 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BME96_08295 PF13538 UvrD-like helicase C-terminal domain BME96_08295 PF14490 Helix-hairpin-helix containing domain BME96_08305 PF01594 AI-2E family transporter BME96_08310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BME96_08310 PF01411 tRNA synthetases class II (A) BME96_08310 PF02272 DHHA1 domain BME96_08315 PF06135 IreB regulatory phosphoprotein BME96_08320 PF03652 Holliday junction resolvase BME96_08325 PF06949 Protein of unknown function (DUF1292) BME96_08330 PF02618 YceG-like family BME96_08340 PF00485 Phosphoribulokinase / Uridine kinase family BME96_08345 PF03449 Transcription elongation factor, N-terminal BME96_08345 PF01272 Transcription elongation factor, GreA/GreB, C-term BME96_08355 PF01048 Phosphorylase superfamily BME96_08365 PF04545 Sigma-70, region 4 BME96_08365 PF04542 Sigma-70 region 2 BME96_08375 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BME96_08385 PF00361 Proton-conducting membrane transporter BME96_08395 PF13244 Domain of unknown function (DUF4040) BME96_08395 PF00361 Proton-conducting membrane transporter BME96_08395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BME96_08400 PF08970 Sporulation inhibitor A BME96_08410 PF01926 50S ribosome-binding GTPase BME96_08415 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BME96_08415 PF01488 Shikimate / quinate 5-dehydrogenase BME96_08415 PF08501 Shikimate dehydrogenase substrate binding domain BME96_08420 PF01985 CRS1 / YhbY (CRM) domain BME96_08425 PF01467 Cytidylyltransferase-like BME96_08430 PF01966 HD domain BME96_08440 PF13649 Methyltransferase domain BME96_08445 PF10531 SLBB domain BME96_08450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BME96_08455 PF03772 Competence protein BME96_08455 PF00753 Metallo-beta-lactamase superfamily BME96_08455 PF13567 Domain of unknown function (DUF4131) BME96_08460 PF06144 DNA polymerase III, delta subunit BME96_08465 PF01649 Ribosomal protein S20 BME96_08470 PF03418 Germination protease BME96_08475 PF07454 Stage II sporulation protein P (SpoIIP) BME96_08485 PF00009 Elongation factor Tu GTP binding domain BME96_08485 PF06421 GTP-binding protein LepA C-terminus BME96_08485 PF14492 Elongation Factor G, domain II BME96_08485 PF00679 Elongation factor G C-terminus BME96_08485 PF03144 Elongation factor Tu domain 2 BME96_08490 PF04055 Radical SAM superfamily BME96_08490 PF06969 HemN C-terminal domain BME96_08495 PF01628 HrcA protein C terminal domain BME96_08500 PF01025 GrpE BME96_08505 PF00012 Hsp70 protein BME96_08510 PF00226 DnaJ domain BME96_08510 PF00684 DnaJ central domain BME96_08510 PF01556 DnaJ C terminal domain BME96_08520 PF04452 RNA methyltransferase BME96_08525 PF01938 TRAM domain BME96_08525 PF04055 Radical SAM superfamily BME96_08525 PF00919 Uncharacterized protein family UPF0004 BME96_08530 PF01791 DeoC/LacD family aldolase BME96_08535 PF01165 Ribosomal protein S21 BME96_08540 PF09424 Yqey-like protein BME96_08545 PF01972 Serine dehydrogenase proteinase BME96_08545 PF01957 NfeD-like C-terminal, partner-binding BME96_08550 PF12127 SigmaW regulon antibacterial BME96_08560 PF07873 YabP family BME96_08565 PF06898 Putative stage IV sporulation protein YqfD BME96_08570 PF02562 PhoH-like protein BME96_08575 PF01966 HD domain BME96_08575 PF07698 7TM receptor with intracellular HD hydrolase BME96_08575 PF07697 7TM-HD extracellular BME96_08580 PF02130 Uncharacterized protein family UPF0054 BME96_08590 PF01926 50S ribosome-binding GTPase BME96_08590 PF07650 KH domain BME96_08595 PF02565 Recombination protein O C terminal BME96_08595 PF11967 Recombination protein O N terminal BME96_08600 PF02091 Glycyl-tRNA synthetase alpha subunit BME96_08605 PF05746 DALR anticodon binding domain BME96_08605 PF02092 Glycyl-tRNA synthetase beta subunit BME96_08610 PF00571 CBS domain BME96_08610 PF08279 HTH domain BME96_08615 PF03618 Kinase/pyrophosphorylase BME96_08620 PF01807 CHC2 zinc finger BME96_08620 PF08275 DNA primase catalytic core, N-terminal domain BME96_08620 PF10410 DnaB-helicase binding domain of primase BME96_08625 PF00140 Sigma-70 factor, region 1.2 BME96_08625 PF03979 Sigma-70 factor, region 1.1 BME96_08625 PF04539 Sigma-70 region 3 BME96_08625 PF04545 Sigma-70, region 4 BME96_08625 PF04542 Sigma-70 region 2 BME96_08635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_08640 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BME96_08645 PF01784 NIF3 (NGG1p interacting factor 3) BME96_08650 PF00270 DEAD/DEAH box helicase BME96_08650 PF00271 Helicase conserved C-terminal domain BME96_08655 PF01261 Xylose isomerase-like TIM barrel BME96_08680 PF01895 PhoU domain BME96_08715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BME96_08715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BME96_08720 PF07690 Major Facilitator Superfamily BME96_08740 PF00471 Ribosomal protein L33 BME96_08745 PF01812 5-formyltetrahydrofolate cyclo-ligase family BME96_08750 PF00899 ThiF family BME96_08760 PF01694 Rhomboid family BME96_08770 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_08780 PF00480 ROK family BME96_08790 PF00753 Metallo-beta-lactamase superfamily BME96_08795 PF11117 Protein of unknown function (DUF2626) BME96_08825 PF07963 Prokaryotic N-terminal methylation motif BME96_08840 PF02796 Helix-turn-helix domain of resolvase BME96_08840 PF00239 Resolvase, N terminal domain BME96_08845 PF01726 LexA DNA binding domain BME96_08845 PF00717 Peptidase S24-like BME96_08900 PF05866 Endodeoxyribonuclease RusA BME96_08930 PF00589 Phage integrase family BME96_08970 PF00574 Clp protease BME96_09055 PF13539 D-alanyl-D-alanine carboxypeptidase BME96_09095 PF14038 YqzE-like protein BME96_09100 PF11079 Bacterial protein YqhG of unknown function BME96_09105 PF00271 Helicase conserved C-terminal domain BME96_09105 PF00176 SNF2 family N-terminal domain BME96_09110 PF08669 Glycine cleavage T-protein C-terminal barrel domain BME96_09110 PF01571 Aminomethyltransferase folate-binding domain BME96_09115 PF02347 Glycine cleavage system P-protein BME96_09120 PF02347 Glycine cleavage system P-protein BME96_09125 PF00581 Rhodanese-like domain BME96_09130 PF00317 Ribonucleotide reductase, all-alpha domain BME96_09130 PF03477 ATP cone domain BME96_09130 PF02867 Ribonucleotide reductase, barrel domain BME96_09135 PF01325 Iron dependent repressor, N-terminal DNA binding domain BME96_09135 PF02742 Iron dependent repressor, metal binding and dimerisation domain BME96_09140 PF01734 Patatin-like phospholipase BME96_09150 PF11085 Conserved membrane protein YqhR BME96_09155 PF00557 Metallopeptidase family M24 BME96_09155 PF01321 Creatinase/Prolidase N-terminal domain BME96_09160 PF01132 Elongation factor P (EF-P) OB domain BME96_09160 PF08207 Elongation factor P (EF-P) KOW-like domain BME96_09160 PF09285 Elongation factor P, C-terminal BME96_09170 PF09548 Stage III sporulation protein AB (spore_III_AB) BME96_09175 PF06686 Stage III sporulation protein AC/AD protein family BME96_09180 PF06686 Stage III sporulation protein AC/AD protein family BME96_09185 PF09546 Stage III sporulation protein AE (spore_III_AE) BME96_09190 PF09581 Stage III sporulation protein AF (Spore_III_AF) BME96_09200 PF12685 SpoIIIAH-like protein BME96_09205 PF00364 Biotin-requiring enzyme BME96_09210 PF00289 Biotin carboxylase, N-terminal domain BME96_09210 PF02785 Biotin carboxylase C-terminal domain BME96_09210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BME96_09215 PF03780 Asp23 family, cell envelope-related function BME96_09220 PF01029 NusB family BME96_09225 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BME96_09225 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BME96_09230 PF02601 Exonuclease VII, large subunit BME96_09230 PF13742 OB-fold nucleic acid binding domain BME96_09235 PF02609 Exonuclease VII small subunit BME96_09240 PF00348 Polyprenyl synthetase BME96_09250 PF01728 FtsJ-like methyltransferase BME96_09250 PF01479 S4 domain BME96_09255 PF01316 Arginine repressor, DNA binding domain BME96_09255 PF02863 Arginine repressor, C-terminal domain BME96_09260 PF13476 AAA domain BME96_09265 PF17820 PDZ domain BME96_09265 PF05580 SpoIVB peptidase S55 BME96_09270 PF00072 Response regulator receiver domain BME96_09270 PF08769 Sporulation initiation factor Spo0A C terminal BME96_09275 PF13840 ACT domain BME96_09275 PF00696 Amino acid kinase family BME96_09285 PF00158 Sigma-54 interaction domain BME96_09285 PF02954 Bacterial regulatory protein, Fis family BME96_09285 PF00989 PAS fold BME96_09290 PF01515 Phosphate acetyl/butaryl transferase BME96_09295 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BME96_09295 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_09305 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_09305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_09310 PF00676 Dehydrogenase E1 component BME96_09315 PF02780 Transketolase, C-terminal domain BME96_09315 PF02779 Transketolase, pyrimidine binding domain BME96_09320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BME96_09320 PF00364 Biotin-requiring enzyme BME96_09320 PF02817 e3 binding domain BME96_09325 PF06491 Disulphide isomerase BME96_09330 PF06081 Aromatic acid exporter family member 1 BME96_09330 PF11728 Putative aromatic acid exporter C-terminal domain BME96_09345 PF01039 Carboxyl transferase domain BME96_09350 PF01546 Peptidase family M20/M25/M40 BME96_09350 PF07687 Peptidase dimerisation domain BME96_09355 PF01609 Transposase DDE domain BME96_09360 PF00817 impB/mucB/samB family BME96_09360 PF11799 impB/mucB/samB family C-terminal domain BME96_09360 PF11798 IMS family HHH motif BME96_09365 PF00171 Aldehyde dehydrogenase family BME96_09370 PF00753 Metallo-beta-lactamase superfamily BME96_09375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BME96_09380 PF03009 Glycerophosphoryl diester phosphodiesterase family BME96_09385 PF01546 Peptidase family M20/M25/M40 BME96_09390 PF00753 Metallo-beta-lactamase superfamily BME96_09395 PF00106 short chain dehydrogenase BME96_09405 PF00248 Aldo/keto reductase family BME96_09410 PF00293 NUDIX domain BME96_09420 PF01944 Stage II sporulation protein M BME96_09425 PF01475 Ferric uptake regulator family BME96_09430 PF14004 Protein of unknown function (DUF4227) BME96_09435 PF02899 Phage integrase, N-terminal SAM-like domain BME96_09435 PF00589 Phage integrase family BME96_09440 PF01676 Metalloenzyme superfamily BME96_09445 PF01048 Phosphorylase superfamily BME96_09450 PF02885 Glycosyl transferase family, helical bundle domain BME96_09450 PF00591 Glycosyl transferase family, a/b domain BME96_09450 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BME96_09455 PF07943 Penicillin-binding protein 5, C-terminal domain BME96_09455 PF00768 D-alanyl-D-alanine carboxypeptidase BME96_09460 PF01740 STAS domain BME96_09465 PF13581 Histidine kinase-like ATPase domain BME96_09470 PF04545 Sigma-70, region 4 BME96_09470 PF04539 Sigma-70 region 3 BME96_09470 PF04542 Sigma-70 region 2 BME96_09475 PF12164 Stage V sporulation protein AA BME96_09480 PF13782 Stage V sporulation protein AB BME96_09485 PF03323 Bacillus/Clostridium GerA spore germination protein BME96_09490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BME96_09490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BME96_09495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BME96_09505 PF00583 Acetyltransferase (GNAT) family BME96_09515 PF02616 Segregation and condensation protein ScpA BME96_09520 PF04079 Segregation and condensation complex subunit ScpB BME96_09525 PF07943 Penicillin-binding protein 5, C-terminal domain BME96_09525 PF00768 D-alanyl-D-alanine carboxypeptidase BME96_09530 PF07670 Nucleoside recognition BME96_09535 PF07670 Nucleoside recognition BME96_09540 PF01479 S4 domain BME96_09540 PF00849 RNA pseudouridylate synthase BME96_09545 PF00578 AhpC/TSA family BME96_09550 PF05140 ResB-like family BME96_09555 PF01578 Cytochrome C assembly protein BME96_09560 PF00486 Transcriptional regulatory protein, C terminal BME96_09560 PF00072 Response regulator receiver domain BME96_09565 PF00512 His Kinase A (phospho-acceptor) domain BME96_09565 PF18698 Histidine kinase sensor domain BME96_09565 PF00672 HAMP domain BME96_09565 PF00989 PAS fold BME96_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_09580 PF14493 Helix-turn-helix domain BME96_09585 PF00271 Helicase conserved C-terminal domain BME96_09585 PF00270 DEAD/DEAH box helicase BME96_09590 PF02517 CPBP intramembrane metalloprotease BME96_09600 PF00149 Calcineurin-like phosphoesterase BME96_09605 PF05389 Negative regulator of genetic competence (MecA) BME96_09610 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_09610 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BME96_09620 PF00710 Asparaginase, N-terminal BME96_09620 PF17763 Glutaminase/Asparaginase C-terminal domain BME96_09625 PF13367 PrsW family intramembrane metalloprotease BME96_09630 PF01471 Putative peptidoglycan binding domain BME96_09630 PF07486 Cell Wall Hydrolase BME96_09635 PF14620 YpeB sporulation BME96_09635 PF03413 Peptidase propeptide and YPEB domain BME96_09645 PF02224 Cytidylate kinase BME96_09655 PF00575 S1 RNA binding domain BME96_09665 PF14045 YIEGIA protein BME96_09675 PF01926 50S ribosome-binding GTPase BME96_09675 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BME96_09680 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BME96_09680 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BME96_09700 PF09547 Stage IV sporulation protein A (spore_IV_A) BME96_09705 PF00216 Bacterial DNA-binding protein BME96_09710 PF02081 Tryptophan RNA-binding attenuator protein BME96_09715 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BME96_09720 PF01209 ubiE/COQ5 methyltransferase family BME96_09725 PF00348 Polyprenyl synthetase BME96_09730 PF00334 Nucleoside diphosphate kinase BME96_09735 PF03705 CheR methyltransferase, all-alpha domain BME96_09735 PF01739 CheR methyltransferase, SAM binding domain BME96_09740 PF01264 Chorismate synthase BME96_09745 PF01761 3-dehydroquinate synthase BME96_09750 PF07736 Chorismate mutase type I BME96_09755 PF00155 Aminotransferase class I and II BME96_09760 PF02153 Prephenate dehydrogenase BME96_09760 PF01842 ACT domain BME96_09765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BME96_09775 PF08864 UPF0302 domain BME96_09775 PF08858 IDEAL domain BME96_09780 PF10673 Protein of unknown function (DUF2487) BME96_09785 PF00355 Rieske [2Fe-2S] domain BME96_09790 PF00033 Cytochrome b/b6/petB BME96_09795 PF00032 Cytochrome b(C-terminal)/b6/petD BME96_09795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_09800 PF07187 Protein of unknown function (DUF1405) BME96_09810 PF04298 Putative neutral zinc metallopeptidase BME96_09815 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_09815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_09820 PF03819 MazG nucleotide pyrophosphohydrolase domain BME96_09825 PF01113 Dihydrodipicolinate reductase, N-terminus BME96_09825 PF05173 Dihydrodipicolinate reductase, C-terminus BME96_09830 PF02142 MGS-like domain BME96_09835 PF13439 Glycosyltransferase Family 4 BME96_09835 PF00534 Glycosyl transferases group 1 BME96_09840 PF01743 Poly A polymerase head domain BME96_09840 PF12627 Probable RNA and SrmB- binding site of polymerase A BME96_09840 PF13735 tRNA nucleotidyltransferase domain 2 putative BME96_09845 PF02237 Biotin protein ligase C terminal domain BME96_09845 PF03099 Biotin/lipoate A/B protein ligase family BME96_09845 PF08279 HTH domain BME96_09850 PF02548 Ketopantoate hydroxymethyltransferase BME96_09855 PF02569 Pantoate-beta-alanine ligase BME96_09860 PF02261 Aspartate decarboxylase BME96_09865 PF04851 Type III restriction enzyme, res subunit BME96_09865 PF13307 Helicase C-terminal domain BME96_09865 PF00929 Exonuclease BME96_09870 PF14084 Protein of unknown function (DUF4264) BME96_09880 PF00155 Aminotransferase class I and II BME96_09885 PF00152 tRNA synthetases class II (D, K and N) BME96_09885 PF01336 OB-fold nucleic acid binding domain BME96_09890 PF07261 Replication initiation and membrane attachment BME96_09895 PF00730 HhH-GPD superfamily base excision DNA repair protein BME96_09895 PF10576 Iron-sulfur binding domain of endonuclease III BME96_09895 PF00633 Helix-hairpin-helix motif BME96_09900 PF00912 Transglycosylase BME96_09900 PF00905 Penicillin binding protein transpeptidase domain BME96_09905 PF03838 Recombination protein U BME96_09910 PF10720 Protein of unknown function (DUF2515) BME96_09925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BME96_09930 PF05103 DivIVA protein BME96_09940 PF02926 THUMP domain BME96_09940 PF01170 Putative RNA methylase family UPF0020 BME96_09945 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BME96_09950 PF00195 Chalcone and stilbene synthases, N-terminal domain BME96_09950 PF02797 Chalcone and stilbene synthases, C-terminal domain BME96_09955 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BME96_09960 PF00115 Cytochrome C and Quinol oxidase polypeptide I BME96_09965 PF09125 Cytochrome C oxidase subunit II, transmembrane BME96_09965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BME96_09980 PF02592 Putative vitamin uptake transporter BME96_09985 PF00313 'Cold-shock' DNA-binding domain BME96_09990 PF01268 Formate--tetrahydrofolate ligase BME96_09995 PF01966 HD domain BME96_10000 PF00877 NlpC/P60 family BME96_10000 PF01476 LysM domain BME96_10005 PF00303 Thymidylate synthase BME96_10010 PF00186 Dihydrofolate reductase BME96_10015 PF12804 MobA-like NTP transferase domain BME96_10020 PF02416 mttA/Hcf106 family BME96_10025 PF02416 mttA/Hcf106 family BME96_10030 PF00902 Sec-independent protein translocase protein (TatC) BME96_10035 PF06855 YozE SAM-like fold BME96_10040 PF08863 YolD-like protein BME96_10050 PF01641 SelR domain BME96_10050 PF01625 Peptide methionine sulfoxide reductase BME96_10060 PF00246 Zinc carboxypeptidase BME96_10060 PF01476 LysM domain BME96_10065 PF00037 4Fe-4S binding domain BME96_10070 PF00708 Acylphosphatase BME96_10090 PF00384 Molybdopterin oxidoreductase BME96_10090 PF01568 Molydopterin dinucleotide binding domain BME96_10090 PF14710 Respiratory nitrate reductase alpha N-terminal BME96_10095 PF13247 4Fe-4S dicluster domain BME96_10095 PF14711 Respiratory nitrate reductase beta C-terminal BME96_10105 PF02665 Nitrate reductase gamma subunit BME96_10110 PF00355 Rieske [2Fe-2S] domain BME96_10110 PF01266 FAD dependent oxidoreductase BME96_10120 PF00291 Pyridoxal-phosphate dependent enzyme BME96_10125 PF00355 Rieske [2Fe-2S] domain BME96_10125 PF01266 FAD dependent oxidoreductase BME96_10130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BME96_10130 PF01367 5'-3' exonuclease, C-terminal SAM fold BME96_10135 PF00350 Dynamin family BME96_10140 PF01613 Flavin reductase like domain BME96_10145 PF01039 Carboxyl transferase domain BME96_10150 PF00378 Enoyl-CoA hydratase/isomerase BME96_10155 PF00364 Biotin-requiring enzyme BME96_10160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BME96_10160 PF00289 Biotin carboxylase, N-terminal domain BME96_10160 PF02785 Biotin carboxylase C-terminal domain BME96_10165 PF13193 AMP-binding enzyme C-terminal domain BME96_10165 PF00501 AMP-binding enzyme BME96_10170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_10170 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_10170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_10175 PF00440 Bacterial regulatory proteins, tetR family BME96_10180 PF03989 DNA gyrase C-terminal domain, beta-propeller BME96_10180 PF00521 DNA gyrase/topoisomerase IV, subunit A BME96_10185 PF01751 Toprim domain BME96_10185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_10185 PF00986 DNA gyrase B subunit, carboxyl terminus BME96_10185 PF00204 DNA gyrase B BME96_10190 PF13380 CoA binding domain BME96_10195 PF00528 Binding-protein-dependent transport system inner membrane component BME96_10200 PF00571 CBS domain BME96_10200 PF00005 ABC transporter BME96_10205 PF02660 Glycerol-3-phosphate acyltransferase BME96_10210 PF02649 Type I GTP cyclohydrolase folE2 BME96_10215 PF01809 Putative membrane protein insertion efficiency factor BME96_10225 PF03061 Thioesterase superfamily BME96_10235 PF00578 AhpC/TSA family BME96_10240 PF00694 Aconitase C-terminal domain BME96_10240 PF00330 Aconitase family (aconitate hydratase) BME96_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_10245 PF08447 PAS fold BME96_10245 PF00989 PAS fold BME96_10245 PF00512 His Kinase A (phospho-acceptor) domain BME96_10250 PF11084 Protein of unknown function (DUF2621) BME96_10255 PF07301 Protein of unknown function (DUF1453) BME96_10260 PF00072 Response regulator receiver domain BME96_10265 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BME96_10270 PF02683 Cytochrome C biogenesis protein transmembrane region BME96_10275 PF03672 Uncharacterised protein family (UPF0154) BME96_10285 PF02779 Transketolase, pyrimidine binding domain BME96_10285 PF00456 Transketolase, thiamine diphosphate binding domain BME96_10285 PF02780 Transketolase, C-terminal domain BME96_10290 PF05979 Bacterial protein of unknown function (DUF896) BME96_10295 PF00239 Resolvase, N terminal domain BME96_10300 PF01726 LexA DNA binding domain BME96_10300 PF00717 Peptidase S24-like BME96_10305 PF00120 Glutamine synthetase, catalytic domain BME96_10305 PF03951 Glutamine synthetase, beta-Grasp domain BME96_10310 PF13411 MerR HTH family regulatory protein BME96_10315 PF06838 Methionine gamma-lyase BME96_10320 PF01926 50S ribosome-binding GTPase BME96_10320 PF16360 GTP-binding GTPase Middle Region BME96_10320 PF13167 GTP-binding GTPase N-terminal BME96_10325 PF17866 AAA lid domain BME96_10325 PF00004 ATPase family associated with various cellular activities (AAA) BME96_10330 PF17209 Hfq protein BME96_10340 PF00210 Ferritin-like domain BME96_10345 PF08676 MutL C terminal dimerisation domain BME96_10345 PF01119 DNA mismatch repair protein, C-terminal domain BME96_10350 PF05192 MutS domain III BME96_10350 PF01624 MutS domain I BME96_10350 PF05188 MutS domain II BME96_10350 PF00488 MutS domain V BME96_10350 PF05190 MutS family domain IV BME96_10360 PF01797 Transposase IS200 like BME96_10365 PF10628 Outer spore coat protein E (CotE) BME96_10370 PF06133 Control of competence regulator ComK, YlbF/YmcA BME96_10375 PF01938 TRAM domain BME96_10375 PF04055 Radical SAM superfamily BME96_10375 PF00919 Uncharacterized protein family UPF0004 BME96_10380 PF04232 Stage V sporulation protein S (SpoVS) BME96_10385 PF13277 YmdB-like protein BME96_10390 PF00013 KH domain BME96_10390 PF01966 HD domain BME96_10390 PF12072 Domain of unknown function (DUF3552) BME96_10395 PF00154 recA bacterial DNA recombination protein BME96_10400 PF18146 Damage-inducible protein CinA KH domain BME96_10400 PF00994 Probable molybdopterin binding domain BME96_10400 PF02464 Competence-damaged protein BME96_10405 PF01066 CDP-alcohol phosphatidyltransferase BME96_10410 PF13464 Domain of unknown function (DUF4115) BME96_10415 PF11868 Protein of unknown function (DUF3388) BME96_10420 PF11588 Protein of unknown function (DUF3243) BME96_10430 PF00675 Insulinase (Peptidase family M16) BME96_10430 PF05193 Peptidase M16 inactive domain BME96_10435 PF05193 Peptidase M16 inactive domain BME96_10455 PF02608 ABC transporter substrate-binding protein PnrA-like BME96_10460 PF07702 UTRA domain BME96_10460 PF00392 Bacterial regulatory proteins, gntR family BME96_10465 PF09397 Ftsk gamma domain BME96_10465 PF17854 FtsK alpha domain BME96_10465 PF01580 FtsK/SpoIIIE family BME96_10475 PF00574 Clp protease BME96_10480 PF00701 Dihydrodipicolinate synthetase family BME96_10485 PF00696 Amino acid kinase family BME96_10485 PF13840 ACT domain BME96_10490 PF01118 Semialdehyde dehydrogenase, NAD binding domain BME96_10490 PF02774 Semialdehyde dehydrogenase, dimerisation domain BME96_10495 PF02441 Flavoprotein BME96_10500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BME96_10500 PF16924 Dipicolinate synthase subunit A N-terminal domain BME96_10505 PF05239 PRC-barrel domain BME96_10510 PF00675 Insulinase (Peptidase family M16) BME96_10510 PF05193 Peptidase M16 inactive domain BME96_10515 PF01522 Polysaccharide deacetylase BME96_10520 PF00575 S1 RNA binding domain BME96_10520 PF01138 3' exoribonuclease family, domain 1 BME96_10520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BME96_10520 PF00013 KH domain BME96_10520 PF03725 3' exoribonuclease family, domain 2 BME96_10525 PF00312 Ribosomal protein S15 BME96_10530 PF06574 FAD synthetase BME96_10530 PF01687 Riboflavin kinase BME96_10535 PF01509 TruB family pseudouridylate synthase (N terminal domain) BME96_10535 PF16198 tRNA pseudouridylate synthase B C-terminal domain BME96_10540 PF02033 Ribosome-binding factor A BME96_10550 PF00009 Elongation factor Tu GTP binding domain BME96_10550 PF11987 Translation-initiation factor 2 BME96_10550 PF04760 Translation initiation factor IF-2, N-terminal region BME96_10555 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BME96_10560 PF04296 Protein of unknown function (DUF448) BME96_10565 PF08529 NusA N-terminal domain BME96_10565 PF00575 S1 RNA binding domain BME96_10565 PF13184 NusA-like KH domain BME96_10570 PF17384 RimP C-terminal SH3 domain BME96_10570 PF02576 RimP N-terminal domain BME96_10575 PF08678 Rsbr N terminal BME96_10575 PF01740 STAS domain BME96_10580 PF11490 DNA polymerase III polC-type N-terminus II BME96_10580 PF07733 Bacterial DNA polymerase III alpha NTPase domain BME96_10580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BME96_10580 PF14579 Helix-hairpin-helix motif BME96_10580 PF02811 PHP domain BME96_10580 PF14480 DNA polymerase III polC-type N-terminus I BME96_10580 PF00929 Exonuclease BME96_10580 PF01336 OB-fold nucleic acid binding domain BME96_10585 PF02163 Peptidase family M50 BME96_10585 PF17820 PDZ domain BME96_10595 PF01255 Putative undecaprenyl diphosphate synthase BME96_10600 PF01765 Ribosome recycling factor BME96_10605 PF00696 Amino acid kinase family BME96_10610 PF00889 Elongation factor TS BME96_10615 PF00318 Ribosomal protein S2 BME96_10630 PF04539 Sigma-70 region 3 BME96_10630 PF04545 Sigma-70, region 4 BME96_10630 PF04542 Sigma-70 region 2 BME96_10635 PF03975 CheD chemotactic sensory transduction BME96_10640 PF04509 CheC-like family BME96_10645 PF01584 CheW-like domain BME96_10650 PF00072 Response regulator receiver domain BME96_10650 PF01339 CheB methylesterase BME96_10655 PF10609 NUBPL iron-transfer P-loop NTPase BME96_10660 PF00448 SRP54-type protein, GTPase domain BME96_10665 PF00771 FHIPEP family BME96_10670 PF01312 FlhB HrpN YscU SpaS Family BME96_10675 PF01311 Bacterial export proteins, family 1 BME96_10680 PF01313 Bacterial export proteins, family 3 BME96_10685 PF00813 FliP family BME96_10690 PF04347 Flagellar biosynthesis protein, FliO BME96_10695 PF00072 Response regulator receiver domain BME96_10700 PF04509 CheC-like family BME96_10700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BME96_10705 PF02154 Flagellar motor switch protein FliM BME96_10705 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BME96_10710 PF03748 Flagellar basal body-associated protein FliL BME96_10715 PF06289 Flagellar and Swarming motility proteins BME96_10720 PF00460 Flagella basal body rod protein BME96_10720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BME96_10730 PF03963 Flagellar hook capping protein - N-terminal region BME96_10750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BME96_10750 PF02874 ATP synthase alpha/beta family, beta-barrel domain BME96_10750 PF18269 T3SS EscN ATPase C-terminal domain BME96_10760 PF14841 FliG middle domain BME96_10760 PF14842 FliG N-terminal domain BME96_10760 PF01706 FliG C-terminal domain BME96_10765 PF01514 Secretory protein of YscJ/FliF family BME96_10765 PF08345 Flagellar M-ring protein C-terminal BME96_10770 PF02049 Flagellar hook-basal body complex protein FliE BME96_10775 PF00460 Flagella basal body rod protein BME96_10775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BME96_10780 PF00460 Flagella basal body rod protein BME96_10785 PF08222 CodY helix-turn-helix domain BME96_10785 PF06018 CodY GAF-like domain BME96_10790 PF10431 C-terminal, D2-small domain, of ClpB protein BME96_10790 PF07724 AAA domain (Cdc48 subfamily) BME96_10790 PF00004 ATPase family associated with various cellular activities (AAA) BME96_10795 PF00227 Proteasome subunit BME96_10800 PF00589 Phage integrase family BME96_10800 PF02899 Phage integrase, N-terminal SAM-like domain BME96_10815 PF01751 Toprim domain BME96_10815 PF01396 Topoisomerase DNA binding C4 zinc finger BME96_10815 PF01131 DNA topoisomerase BME96_10820 PF02481 DNA recombination-mediator protein A BME96_10825 PF00549 CoA-ligase BME96_10825 PF02629 CoA binding domain BME96_10830 PF00549 CoA-ligase BME96_10830 PF08442 ATP-grasp domain BME96_10835 PF01312 FlhB HrpN YscU SpaS Family BME96_10845 PF01351 Ribonuclease HII BME96_10850 PF01926 50S ribosome-binding GTPase BME96_10855 PF10502 Signal peptidase, peptidase S26 BME96_10860 PF01245 Ribosomal protein L19 BME96_10865 PF01746 tRNA (Guanine-1)-methyltransferase BME96_10870 PF01782 RimM N-terminal domain BME96_10870 PF05239 PRC-barrel domain BME96_10885 PF00886 Ribosomal protein S16 BME96_10890 PF02978 Signal peptide binding domain BME96_10890 PF02881 SRP54-type protein, helical bundle domain BME96_10890 PF00448 SRP54-type protein, GTPase domain BME96_10895 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BME96_10900 PF00448 SRP54-type protein, GTPase domain BME96_10900 PF02881 SRP54-type protein, helical bundle domain BME96_10905 PF02463 RecF/RecN/SMC N terminal domain BME96_10905 PF06470 SMC proteins Flexible Hinge Domain BME96_10910 PF06569 Protein of unknown function (DUF1128) BME96_10915 PF14622 Ribonuclease-III-like BME96_10915 PF00035 Double-stranded RNA binding motif BME96_10920 PF00550 Phosphopantetheine attachment site BME96_10930 PF00698 Acyl transferase domain BME96_10935 PF02504 Fatty acid synthesis protein BME96_10945 PF00270 DEAD/DEAH box helicase BME96_10945 PF00271 Helicase conserved C-terminal domain BME96_10945 PF17191 RecG wedge domain BME96_10950 PF03313 Serine dehydratase alpha chain BME96_10955 PF03315 Serine dehydratase beta chain BME96_10955 PF01842 ACT domain BME96_10960 PF00860 Permease family BME96_10965 PF02734 DAK2 domain BME96_10965 PF13684 Dihydroxyacetone kinase family BME96_10970 PF03780 Asp23 family, cell envelope-related function BME96_10975 PF00830 Ribosomal L28 family BME96_10980 PF08183 Stage V sporulation protein family BME96_10985 PF04263 Thiamin pyrophosphokinase, catalytic domain BME96_10985 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BME96_10990 PF00834 Ribulose-phosphate 3 epimerase family BME96_10995 PF03193 RsgA GTPase BME96_10995 PF16745 RsgA N-terminal domain BME96_11000 PF00069 Protein kinase domain BME96_11000 PF03793 PASTA domain BME96_11010 PF01029 NusB family BME96_11010 PF01189 16S rRNA methyltransferase RsmB/F BME96_11015 PF00551 Formyl transferase BME96_11015 PF02911 Formyl transferase, C-terminal domain BME96_11020 PF04851 Type III restriction enzyme, res subunit BME96_11020 PF00271 Helicase conserved C-terminal domain BME96_11020 PF17764 3′ DNA-binding domain (3′BD) BME96_11020 PF18074 Primosomal protein N C-terminal domain BME96_11020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BME96_11025 PF04127 DNA / pantothenate metabolism flavoprotein BME96_11025 PF02441 Flavoprotein BME96_11030 PF01192 RNA polymerase Rpb6 BME96_11035 PF00625 Guanylate kinase BME96_11040 PF04025 Domain of unknown function (DUF370) BME96_11045 PF00689 Cation transporting ATPase, C-terminus BME96_11045 PF00690 Cation transporter/ATPase, N-terminus BME96_11055 PF02566 OsmC-like protein BME96_11060 PF03466 LysR substrate binding domain BME96_11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_11065 PF00156 Phosphoribosyl transferase domain BME96_11070 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BME96_11075 PF01180 Dihydroorotate dehydrogenase BME96_11080 PF00970 Oxidoreductase FAD-binding domain BME96_11080 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BME96_11085 PF02142 MGS-like domain BME96_11085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BME96_11085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BME96_11090 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BME96_11090 PF00117 Glutamine amidotransferase class-I BME96_11095 PF01979 Amidohydrolase family BME96_11100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BME96_11100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BME96_11105 PF00156 Phosphoribosyl transferase domain BME96_11110 PF01479 S4 domain BME96_11110 PF00849 RNA pseudouridylate synthase BME96_11115 PF01252 Signal peptidase (SPase) II BME96_11125 PF00133 tRNA synthetases class I (I, L, M and V) BME96_11125 PF06827 Zinc finger found in FPG and IleRS BME96_11125 PF08264 Anticodon-binding domain of tRNA BME96_11130 PF05103 DivIVA protein BME96_11135 PF17774 Putative RNA-binding domain in YlmH BME96_11135 PF01479 S4 domain BME96_11140 PF02325 YGGT family BME96_11145 PF04472 Cell division protein SepF BME96_11150 PF01168 Alanine racemase, N-terminal domain BME96_11160 PF05239 PRC-barrel domain BME96_11165 PF04539 Sigma-70 region 3 BME96_11165 PF04545 Sigma-70, region 4 BME96_11165 PF04542 Sigma-70 region 2 BME96_11170 PF04542 Sigma-70 region 2 BME96_11170 PF04545 Sigma-70, region 4 BME96_11175 PF03419 Sporulation factor SpoIIGA BME96_11180 PF00091 Tubulin/FtsZ family, GTPase domain BME96_11180 PF12327 FtsZ family, C-terminal domain BME96_11185 PF02491 SHS2 domain inserted in FTSA BME96_11190 PF08478 POTRA domain, FtsQ-type BME96_11195 PF01098 Cell cycle protein BME96_11200 PF08245 Mur ligase middle domain BME96_11200 PF02875 Mur ligase family, glutamate ligase domain BME96_11205 PF00953 Glycosyl transferase family 4 BME96_11210 PF01225 Mur ligase family, catalytic domain BME96_11210 PF02875 Mur ligase family, glutamate ligase domain BME96_11210 PF08245 Mur ligase middle domain BME96_11215 PF01225 Mur ligase family, catalytic domain BME96_11215 PF02875 Mur ligase family, glutamate ligase domain BME96_11215 PF08245 Mur ligase middle domain BME96_11220 PF00905 Penicillin binding protein transpeptidase domain BME96_11220 PF03717 Penicillin-binding Protein dimerisation domain BME96_11220 PF03793 PASTA domain BME96_11230 PF04977 Septum formation initiator BME96_11235 PF01795 MraW methylase family BME96_11240 PF02381 MraZ protein, putative antitoxin-like BME96_11245 PF10079 Bacillithiol biosynthesis BshC BME96_11255 PF02558 Ketopantoate reductase PanE/ApbA BME96_11255 PF08546 Ketopantoate reductase PanE/ApbA C terminal BME96_11260 PF13508 Acetyltransferase (GNAT) domain BME96_11270 PF00378 Enoyl-CoA hydratase/isomerase BME96_11275 PF01783 Ribosomal L32p protein family BME96_11280 PF02620 Large ribosomal RNA subunit accumulation protein YceD BME96_11285 PF05636 HIGH Nucleotidyl Transferase BME96_11290 PF05362 Lon protease (S16) C-terminal proteolytic domain BME96_11290 PF13180 PDZ domain BME96_11295 PF07670 Nucleoside recognition BME96_11300 PF01467 Cytidylyltransferase-like BME96_11310 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BME96_11315 PF06133 Control of competence regulator ComK, YlbF/YmcA BME96_11325 PF14071 Putative coat protein BME96_11330 PF14504 CAP-associated N-terminal BME96_11330 PF00188 Cysteine-rich secretory protein family BME96_11335 PF08868 YugN-like family BME96_11340 PF01594 AI-2E family transporter BME96_11345 PF04238 Protein of unknown function (DUF420) BME96_11350 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BME96_11355 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BME96_11360 PF00510 Cytochrome c oxidase subunit III BME96_11365 PF00115 Cytochrome C and Quinol oxidase polypeptide I BME96_11370 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BME96_11370 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BME96_11370 PF00034 Cytochrome c BME96_11375 PF01040 UbiA prenyltransferase family BME96_11380 PF02628 Cytochrome oxidase assembly protein BME96_11385 PF00364 Biotin-requiring enzyme BME96_11385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BME96_11385 PF00289 Biotin carboxylase, N-terminal domain BME96_11385 PF02785 Biotin carboxylase C-terminal domain BME96_11385 PF00682 HMGL-like BME96_11385 PF02436 Conserved carboxylase domain BME96_11390 PF01098 Cell cycle protein BME96_11395 PF07408 Protein of unknown function (DUF1507) BME96_11405 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BME96_11415 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BME96_11420 PF14036 YlaH-like protein BME96_11425 PF00459 Inositol monophosphatase family BME96_11435 PF06335 Protein of unknown function (DUF1054) BME96_11440 PF05256 Uncharacterised protein family (UPF0223) BME96_11445 PF03060 Nitronate monooxygenase BME96_11450 PF01276 Orn/Lys/Arg decarboxylase, major domain BME96_11450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BME96_11465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_11465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_11470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BME96_11470 PF00364 Biotin-requiring enzyme BME96_11470 PF02817 e3 binding domain BME96_11475 PF02780 Transketolase, C-terminal domain BME96_11475 PF02779 Transketolase, pyrimidine binding domain BME96_11480 PF00676 Dehydrogenase E1 component BME96_11485 PF10368 Putative cell-wall binding lipoprotein BME96_11490 PF01327 Polypeptide deformylase BME96_11505 PF00753 Metallo-beta-lactamase superfamily BME96_11505 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BME96_11505 PF17770 Ribonuclease J C-terminal domain BME96_11510 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_11510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_11510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_11515 PF02254 TrkA-N domain BME96_11515 PF02080 TrkA-C domain BME96_11520 PF00005 ABC transporter BME96_11520 PF00664 ABC transporter transmembrane region BME96_11525 PF00664 ABC transporter transmembrane region BME96_11525 PF00005 ABC transporter BME96_11530 PF00578 AhpC/TSA family BME96_11535 PF10417 C-terminal domain of 1-Cys peroxiredoxin BME96_11535 PF00578 AhpC/TSA family BME96_11540 PF03698 Uncharacterised protein family (UPF0180) BME96_11545 PF01546 Peptidase family M20/M25/M40 BME96_11545 PF07687 Peptidase dimerisation domain BME96_11550 PF14602 Hexapeptide repeat of succinyl-transferase BME96_11550 PF00132 Bacterial transferase hexapeptide (six repeats) BME96_11550 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BME96_11560 PF01022 Bacterial regulatory protein, arsR family BME96_11565 PF01545 Cation efflux family BME96_11565 PF16916 Dimerisation domain of Zinc Transporter BME96_11575 PF00149 Calcineurin-like phosphoesterase BME96_11575 PF10518 TAT (twin-arginine translocation) pathway signal sequence BME96_11580 PF14177 YkyB-like protein BME96_11595 PF00892 EamA-like transporter family BME96_11600 PF04405 Domain of Unknown function (DUF542) BME96_11600 PF01814 Hemerythrin HHE cation binding domain BME96_11605 PF00155 Aminotransferase class I and II BME96_11615 PF10502 Signal peptidase, peptidase S26 BME96_11625 PF17820 PDZ domain BME96_11625 PF13180 PDZ domain BME96_11630 PF05651 Putative sugar diacid recognition BME96_11630 PF17853 GGDEF-like domain BME96_11630 PF13556 PucR C-terminal helix-turn-helix domain BME96_11635 PF01266 FAD dependent oxidoreductase BME96_11640 PF02423 Ornithine cyclodeaminase/mu-crystallin family BME96_11645 PF00474 Sodium:solute symporter family BME96_11650 PF02386 Cation transport protein BME96_11660 PF06463 Molybdenum Cofactor Synthesis C BME96_11660 PF04055 Radical SAM superfamily BME96_11665 PF03454 MoeA C-terminal region (domain IV) BME96_11665 PF03453 MoeA N-terminal region (domain I and II) BME96_11665 PF00994 Probable molybdopterin binding domain BME96_11685 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BME96_11690 PF07451 Stage V sporulation protein AD (SpoVAD) BME96_11695 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BME96_11705 PF04239 Protein of unknown function (DUF421) BME96_11710 PF00375 Sodium:dicarboxylate symporter family BME96_11715 PF08240 Alcohol dehydrogenase GroES-like domain BME96_11715 PF00107 Zinc-binding dehydrogenase BME96_11720 PF02374 Anion-transporting ATPase BME96_11730 PF13722 5TM C-terminal transporter carbon starvation CstA BME96_11730 PF02554 Carbon starvation protein CstA BME96_11735 PF07849 Protein of unknown function (DUF1641) BME96_11740 PF01568 Molydopterin dinucleotide binding domain BME96_11740 PF12838 4Fe-4S dicluster domain BME96_11740 PF00384 Molybdopterin oxidoreductase BME96_11740 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BME96_11740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BME96_11745 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BME96_11745 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_11755 PF11181 Heat induced stress protein YflT BME96_11760 PF09515 Thiamine transporter protein (Thia_YuaJ) BME96_11765 PF00330 Aconitase family (aconitate hydratase) BME96_11770 PF01032 FecCD transport family BME96_11775 PF01497 Periplasmic binding protein BME96_11785 PF04294 VanW like protein BME96_11795 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_11800 PF00106 short chain dehydrogenase BME96_11815 PF00860 Permease family BME96_11820 PF01131 DNA topoisomerase BME96_11820 PF01751 Toprim domain BME96_11825 PF00999 Sodium/hydrogen exchanger family BME96_11870 PF00144 Beta-lactamase BME96_11885 PF03551 Transcriptional regulator PadR-like family BME96_11890 PF04072 Leucine carboxyl methyltransferase BME96_11895 PF07690 Major Facilitator Superfamily BME96_11900 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BME96_11910 PF11798 IMS family HHH motif BME96_11910 PF11799 impB/mucB/samB family C-terminal domain BME96_11910 PF00817 impB/mucB/samB family BME96_11915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BME96_11925 PF00106 short chain dehydrogenase BME96_11930 PF06339 Ectoine synthase BME96_11935 PF00202 Aminotransferase class-III BME96_11940 PF00583 Acetyltransferase (GNAT) family BME96_11950 PF00528 Binding-protein-dependent transport system inner membrane component BME96_11955 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BME96_11960 PF00528 Binding-protein-dependent transport system inner membrane component BME96_11965 PF00005 ABC transporter BME96_11965 PF00571 CBS domain BME96_11970 PF12802 MarR family BME96_11980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BME96_11980 PF16924 Dipicolinate synthase subunit A N-terminal domain BME96_11990 PF07969 Amidohydrolase family BME96_11995 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BME96_12000 PF07690 Major Facilitator Superfamily BME96_12005 PF00171 Aldehyde dehydrogenase family BME96_12010 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_12010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_12010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_12015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_12015 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_12015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_12035 PF13452 N-terminal half of MaoC dehydratase BME96_12040 PF13607 Succinyl-CoA ligase like flavodoxin domain BME96_12040 PF00583 Acetyltransferase (GNAT) family BME96_12040 PF13380 CoA binding domain BME96_12050 PF00011 Hsp20/alpha crystallin family BME96_12070 PF00581 Rhodanese-like domain BME96_12080 PF09334 tRNA synthetases class I (M) BME96_12080 PF13603 Leucyl-tRNA synthetase, Domain 2 BME96_12080 PF00133 tRNA synthetases class I (I, L, M and V) BME96_12080 PF08264 Anticodon-binding domain of tRNA BME96_12085 PF06962 Putative rRNA methylase BME96_12090 PF00132 Bacterial transferase hexapeptide (six repeats) BME96_12095 PF02772 S-adenosylmethionine synthetase, central domain BME96_12095 PF02773 S-adenosylmethionine synthetase, C-terminal domain BME96_12095 PF00438 S-adenosylmethionine synthetase, N-terminal domain BME96_12100 PF01293 Phosphoenolpyruvate carboxykinase BME96_12110 PF00005 ABC transporter BME96_12115 PF00528 Binding-protein-dependent transport system inner membrane component BME96_12120 PF00293 NUDIX domain BME96_12135 PF00005 ABC transporter BME96_12140 PF00501 AMP-binding enzyme BME96_12140 PF13193 AMP-binding enzyme C-terminal domain BME96_12145 PF00378 Enoyl-CoA hydratase/isomerase BME96_12150 PF00561 alpha/beta hydrolase fold BME96_12155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_12155 PF16582 Middle domain of thiamine pyrophosphate BME96_12155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_12160 PF00425 chorismate binding enzyme BME96_12165 PF01040 UbiA prenyltransferase family BME96_12170 PF03061 Thioesterase superfamily BME96_12175 PF01258 Prokaryotic dksA/traR C4-type zinc finger BME96_12180 PF12822 ECF transporter, substrate-specific component BME96_12185 PF05922 Peptidase inhibitor I9 BME96_12185 PF00082 Subtilase family BME96_12200 PF07885 Ion channel BME96_12200 PF02254 TrkA-N domain BME96_12210 PF00575 S1 RNA binding domain BME96_12215 PF04070 Domain of unknown function (DUF378) BME96_12220 PF00342 Phosphoglucose isomerase BME96_12225 PF00155 Aminotransferase class I and II BME96_12230 PF00080 Copper/zinc superoxide dismutase (SODC) BME96_12230 PF13627 Prokaryotic lipoprotein-attachment site BME96_12245 PF00381 PTS HPr component phosphorylation site BME96_12250 PF01048 Phosphorylase superfamily BME96_12255 PF02681 Divergent PAP2 family BME96_12260 PF06725 3D domain BME96_12270 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_12275 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_12280 PF01521 Iron-sulphur cluster biosynthesis BME96_12285 PF01678 Diaminopimelate epimerase BME96_12290 PF07315 Protein of unknown function (DUF1462) BME96_12295 PF01106 NifU-like domain BME96_12300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BME96_12300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BME96_12310 PF04608 Phosphatidylglycerophosphatase A BME96_12315 PF13344 Haloacid dehalogenase-like hydrolase BME96_12325 PF01934 Protein of unknown function DUF86 BME96_12335 PF01425 Amidase BME96_12345 PF06265 Protein of unknown function (DUF1027) BME96_12350 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BME96_12355 PF01551 Peptidase family M23 BME96_12360 PF00209 Sodium:neurotransmitter symporter family BME96_12365 PF03553 Na+/H+ antiporter family BME96_12370 PF09560 Sporulation protein YunB (Spo_YunB) BME96_12375 PF01966 HD domain BME96_12375 PF11871 Domain of unknown function (DUF3391) BME96_12380 PF08827 Domain of unknown function (DUF1805) BME96_12385 PF02872 5'-nucleotidase, C-terminal domain BME96_12390 PF01925 Sulfite exporter TauE/SafE BME96_12400 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BME96_12400 PF01580 FtsK/SpoIIIE family BME96_12400 PF09397 Ftsk gamma domain BME96_12400 PF17854 FtsK alpha domain BME96_12420 PF13539 D-alanyl-D-alanine carboxypeptidase BME96_12455 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BME96_12455 PF13229 Right handed beta helix region BME96_12455 PF12708 Pectate lyase superfamily protein BME96_12585 PF03796 DnaB-like helicase C terminal domain BME96_12585 PF00772 DnaB-like helicase N terminal domain BME96_12600 PF00753 Metallo-beta-lactamase superfamily BME96_12620 PF02463 RecF/RecN/SMC N terminal domain BME96_12665 PF00589 Phage integrase family BME96_12665 PF02899 Phage integrase, N-terminal SAM-like domain BME96_12670 PF01458 Uncharacterized protein family (UPF0051) BME96_12675 PF01592 NifU-like N terminal domain BME96_12680 PF00266 Aminotransferase class-V BME96_12685 PF01458 Uncharacterized protein family (UPF0051) BME96_12690 PF00005 ABC transporter BME96_12695 PF03180 NLPA lipoprotein BME96_12700 PF00528 Binding-protein-dependent transport system inner membrane component BME96_12705 PF00005 ABC transporter BME96_12705 PF09383 NIL domain BME96_12710 PF00085 Thioredoxin BME96_12715 PF01751 Toprim domain BME96_12720 PF01597 Glycine cleavage H-protein BME96_12725 PF03960 ArsC family BME96_12730 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_12730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_12730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_12735 PF02803 Thiolase, C-terminal domain BME96_12735 PF00108 Thiolase, N-terminal domain BME96_12740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BME96_12740 PF00378 Enoyl-CoA hydratase/isomerase BME96_12740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BME96_12745 PF01619 Proline dehydrogenase BME96_12750 PF00403 Heavy-metal-associated domain BME96_12755 PF00403 Heavy-metal-associated domain BME96_12760 PF02583 Metal-sensitive transcriptional repressor BME96_12765 PF01297 Zinc-uptake complex component A periplasmic BME96_12765 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BME96_12770 PF00005 ABC transporter BME96_12775 PF00950 ABC 3 transport family BME96_12780 PF01475 Ferric uptake regulator family BME96_12785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BME96_12795 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_12800 PF00877 NlpC/P60 family BME96_12805 PF00463 Isocitrate lyase family BME96_12810 PF01274 Malate synthase BME96_12815 PF06081 Aromatic acid exporter family member 1 BME96_12820 PF00196 Bacterial regulatory proteins, luxR family BME96_12820 PF00072 Response regulator receiver domain BME96_12825 PF07730 Histidine kinase BME96_12825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_12830 PF09922 Cell wall-active antibiotics response 4TMS YvqF BME96_12845 PF07690 Major Facilitator Superfamily BME96_12850 PF00296 Luciferase-like monooxygenase BME96_12860 PF03006 Haemolysin-III related BME96_12865 PF05343 M42 glutamyl aminopeptidase BME96_12880 PF09299 Mu transposase, C-terminal BME96_12880 PF00665 Integrase core domain BME96_12885 PF00665 Integrase core domain BME96_12885 PF09299 Mu transposase, C-terminal BME96_12905 PF07563 Protein of unknown function (DUF1541) BME96_12910 PF00403 Heavy-metal-associated domain BME96_12915 PF00403 Heavy-metal-associated domain BME96_12920 PF02583 Metal-sensitive transcriptional repressor BME96_12935 PF00989 PAS fold BME96_12935 PF00512 His Kinase A (phospho-acceptor) domain BME96_12935 PF16736 Single Cache-like BME96_12935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_12950 PF00578 AhpC/TSA family BME96_12955 PF02683 Cytochrome C biogenesis protein transmembrane region BME96_12965 PF03860 Domain of Unknown Function (DUF326) BME96_12980 PF00989 PAS fold BME96_12980 PF00512 His Kinase A (phospho-acceptor) domain BME96_12980 PF00672 HAMP domain BME96_12980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_12980 PF18698 Histidine kinase sensor domain BME96_12985 PF00072 Response regulator receiver domain BME96_12985 PF00486 Transcriptional regulatory protein, C terminal BME96_12995 PF01451 Low molecular weight phosphotyrosine protein phosphatase BME96_13010 PF00403 Heavy-metal-associated domain BME96_13015 PF01022 Bacterial regulatory protein, arsR family BME96_13035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_13035 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_13035 PF00403 Heavy-metal-associated domain BME96_13040 PF13411 MerR HTH family regulatory protein BME96_13045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_13045 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_13055 PF02374 Anion-transporting ATPase BME96_13060 PF06953 Arsenical resistance operon trans-acting repressor ArsD BME96_13065 PF01451 Low molecular weight phosphotyrosine protein phosphatase BME96_13070 PF02040 Arsenical pump membrane protein BME96_13075 PF01022 Bacterial regulatory protein, arsR family BME96_13080 PF01022 Bacterial regulatory protein, arsR family BME96_13100 PF01668 SmpB protein BME96_13105 PF01297 Zinc-uptake complex component A periplasmic BME96_13110 PF00950 ABC 3 transport family BME96_13115 PF00005 ABC transporter BME96_13120 PF17876 Cold shock domain BME96_13120 PF00773 RNB domain BME96_13120 PF00575 S1 RNA binding domain BME96_13120 PF08206 Ribonuclease B OB domain BME96_13125 PF12146 Serine aminopeptidase, S33 BME96_13130 PF03840 Preprotein translocase SecG subunit BME96_13140 PF02896 PEP-utilising enzyme, TIM barrel domain BME96_13140 PF05524 PEP-utilising enzyme, N-terminal BME96_13140 PF00391 PEP-utilising enzyme, mobile domain BME96_13155 PF03952 Enolase, N-terminal domain BME96_13155 PF00113 Enolase, C-terminal TIM barrel domain BME96_13160 PF01676 Metalloenzyme superfamily BME96_13160 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BME96_13165 PF00121 Triosephosphate isomerase BME96_13170 PF00162 Phosphoglycerate kinase BME96_13175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BME96_13175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BME96_13180 PF04198 Putative sugar-binding domain BME96_13190 PF13456 Reverse transcriptase-like BME96_13195 PF00474 Sodium:solute symporter family BME96_13200 PF04341 Protein of unknown function, DUF485 BME96_13220 PF01144 Coenzyme A transferase BME96_13225 PF01144 Coenzyme A transferase BME96_13235 PF02954 Bacterial regulatory protein, Fis family BME96_13235 PF13426 PAS domain BME96_13235 PF00158 Sigma-54 interaction domain BME96_13240 PF01487 Type I 3-dehydroquinase BME96_13245 PF01202 Shikimate kinase BME96_13260 PF00574 Clp protease BME96_13265 PF00381 PTS HPr component phosphorylation site BME96_13270 PF10298 WhiA N-terminal LAGLIDADG-like domain BME96_13270 PF02650 WhiA C-terminal HTH domain BME96_13270 PF14527 WhiA LAGLIDADG-like domain BME96_13275 PF01933 Uncharacterised protein family UPF0052 BME96_13280 PF03668 P-loop ATPase protein family BME96_13285 PF00293 NUDIX domain BME96_13290 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_13300 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BME96_13300 PF01266 FAD dependent oxidoreductase BME96_13305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BME96_13305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BME96_13310 PF04309 Glycerol-3-phosphate responsive antiterminator BME96_13315 PF14602 Hexapeptide repeat of succinyl-transferase BME96_13320 PF13419 Haloacid dehalogenase-like hydrolase BME96_13325 PF07670 Nucleoside recognition BME96_13330 PF01790 Prolipoprotein diacylglyceryl transferase BME96_13335 PF02603 HPr Serine kinase N terminus BME96_13335 PF07475 HPr Serine kinase C-terminal domain BME96_13340 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BME96_13345 PF04024 PspC domain BME96_13350 PF02585 GlcNAc-PI de-N-acetylase BME96_13355 PF08830 Protein of unknown function (DUF1806) BME96_13360 PF17755 UvrA DNA-binding domain BME96_13360 PF17760 UvrA interaction domain BME96_13360 PF00005 ABC transporter BME96_13365 PF00271 Helicase conserved C-terminal domain BME96_13365 PF02151 UvrB/uvrC motif BME96_13365 PF17757 UvrB interaction domain BME96_13365 PF12344 Ultra-violet resistance protein B BME96_13365 PF04851 Type III restriction enzyme, res subunit BME96_13370 PF07732 Multicopper oxidase BME96_13375 PF17820 PDZ domain BME96_13380 PF03572 Peptidase family S41 BME96_13380 PF17820 PDZ domain BME96_13380 PF01471 Putative peptidoglycan binding domain BME96_13385 PF01551 Peptidase family M23 BME96_13385 PF04225 Opacity-associated protein A LysM-like domain BME96_13390 PF02687 FtsX-like permease family BME96_13390 PF18075 FtsX extracellular domain BME96_13395 PF00005 ABC transporter BME96_13400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_13405 PF03462 PCRF domain BME96_13405 PF00472 RF-1 domain BME96_13410 PF07517 SecA DEAD-like domain BME96_13410 PF01043 SecA preprotein cross-linking domain BME96_13410 PF07516 SecA Wing and Scaffold domain BME96_13410 PF02810 SEC-C motif BME96_13415 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BME96_13415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BME96_13425 PF02561 Flagellar protein FliS BME96_13430 PF03646 FlaG protein BME96_13435 PF02599 Global regulator protein family BME96_13440 PF02623 FliW protein BME96_13450 PF00669 Bacterial flagellin N-terminal helical region BME96_13450 PF00700 Bacterial flagellin C-terminal helical region BME96_13455 PF00460 Flagella basal body rod protein BME96_13455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BME96_13480 PF00271 Helicase conserved C-terminal domain BME96_13480 PF04851 Type III restriction enzyme, res subunit BME96_13485 PF02645 Uncharacterised protein, DegV family COG1307 BME96_13490 PF00196 Bacterial regulatory proteins, luxR family BME96_13490 PF00072 Response regulator receiver domain BME96_13495 PF05384 Sensor protein DegS BME96_13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_13495 PF07730 Histidine kinase BME96_13500 PF01205 Uncharacterized protein family UPF0029 BME96_13500 PF09186 Domain of unknown function (DUF1949) BME96_13505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BME96_13510 PF01979 Amidohydrolase family BME96_13515 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BME96_13515 PF02378 Phosphotransferase system, EIIC BME96_13515 PF00367 phosphotransferase system, EIIB BME96_13525 PF08671 Anti-repressor SinI BME96_13525 PF01381 Helix-turn-helix BME96_13545 PF12389 Camelysin metallo-endopeptidase BME96_13550 PF12389 Camelysin metallo-endopeptidase BME96_13555 PF04203 Sortase domain BME96_13560 PF03816 Cell envelope-related transcriptional attenuator domain BME96_13565 PF05223 NTF2-like N-terminal transpeptidase domain BME96_13565 PF03717 Penicillin-binding Protein dimerisation domain BME96_13565 PF00905 Penicillin binding protein transpeptidase domain BME96_13585 PF00171 Aldehyde dehydrogenase family BME96_13600 PF07690 Major Facilitator Superfamily BME96_13605 PF02626 Carboxyltransferase domain, subdomain A and B BME96_13610 PF03746 LamB/YcsF family BME96_13615 PF02682 Carboxyltransferase domain, subdomain C and D BME96_13620 PF00939 Sodium:sulfate symporter transmembrane region BME96_13625 PF07690 Major Facilitator Superfamily BME96_13630 PF07690 Major Facilitator Superfamily BME96_13640 PF00884 Sulfatase BME96_13650 PF00072 Response regulator receiver domain BME96_13650 PF00196 Bacterial regulatory proteins, luxR family BME96_13655 PF02743 Cache domain BME96_13655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_13655 PF00672 HAMP domain BME96_13660 PF05231 MASE1 BME96_13660 PF00563 EAL domain BME96_13665 PF00072 Response regulator receiver domain BME96_13670 PF01584 CheW-like domain BME96_13675 PF01584 CheW-like domain BME96_13675 PF02895 Signal transducing histidine kinase, homodimeric domain BME96_13675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_13675 PF07194 P2 response regulator binding domain BME96_13675 PF01627 Hpt domain BME96_13685 PF00691 OmpA family BME96_13685 PF13677 Membrane MotB of proton-channel complex MotA/MotB BME96_13690 PF01618 MotA/TolQ/ExbB proton channel family BME96_13695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_13700 PF00171 Aldehyde dehydrogenase family BME96_13705 PF07195 Flagellar hook-associated protein 2 C-terminus BME96_13705 PF02465 Flagellar hook-associated protein 2 N-terminus BME96_13710 PF00135 Carboxylesterase family BME96_13740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_13750 PF00474 Sodium:solute symporter family BME96_13755 PF00144 Beta-lactamase BME96_13760 PF00933 Glycosyl hydrolase family 3 N terminal domain BME96_13760 PF01915 Glycosyl hydrolase family 3 C-terminal domain BME96_13765 PF07075 Protein of unknown function (DUF1343) BME96_13770 PF00528 Binding-protein-dependent transport system inner membrane component BME96_13785 PF13580 SIS domain BME96_13790 PF01380 SIS domain BME96_13790 PF01418 Helix-turn-helix domain, rpiR family BME96_13795 PF00258 Flavodoxin BME96_13810 PF03190 Protein of unknown function, DUF255 BME96_13835 PF01751 Toprim domain BME96_13835 PF01131 DNA topoisomerase BME96_13840 PF02659 Putative manganese efflux pump BME96_13855 PF13509 S1 domain BME96_13855 PF17783 CvfB-like winged helix domain BME96_13865 PF09962 Uncharacterized conserved protein (DUF2196) BME96_13885 PF01970 Tripartite tricarboxylate transporter TctA family BME96_13900 PF12431 Transcriptional regulator BME96_13900 PF08279 HTH domain BME96_13900 PF00072 Response regulator receiver domain BME96_13905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_13905 PF17203 Single cache domain 3 BME96_13905 PF00989 PAS fold BME96_13905 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BME96_13910 PF07690 Major Facilitator Superfamily BME96_13915 PF13291 ACT domain BME96_13915 PF00291 Pyridoxal-phosphate dependent enzyme BME96_13925 PF01804 Penicillin amidase BME96_13930 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BME96_13940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_13945 PF00528 Binding-protein-dependent transport system inner membrane component BME96_13950 PF00528 Binding-protein-dependent transport system inner membrane component BME96_13955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_13955 PF00005 ABC transporter BME96_13960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_13960 PF00005 ABC transporter BME96_13965 PF00483 Nucleotidyl transferase BME96_13970 PF16363 GDP-mannose 4,6 dehydratase BME96_13975 PF00535 Glycosyl transferase family 2 BME96_13985 PF00892 EamA-like transporter family BME96_13990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BME96_14000 PF00883 Cytosol aminopeptidase family, catalytic domain BME96_14000 PF02789 Cytosol aminopeptidase family, N-terminal domain BME96_14010 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_14010 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_14015 PF01610 Transposase BME96_14015 PF13683 Integrase core domain BME96_14020 PF00291 Pyridoxal-phosphate dependent enzyme BME96_14020 PF13291 ACT domain BME96_14025 PF00694 Aconitase C-terminal domain BME96_14030 PF00330 Aconitase family (aconitate hydratase) BME96_14035 PF00180 Isocitrate/isopropylmalate dehydrogenase BME96_14040 PF08502 LeuA allosteric (dimerisation) domain BME96_14040 PF00682 HMGL-like BME96_14045 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BME96_14045 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BME96_14050 PF01842 ACT domain BME96_14050 PF10369 Small subunit of acetolactate synthase BME96_14055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_14055 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_14055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_14060 PF00920 Dehydratase family BME96_14065 PF01758 Sodium Bile acid symporter family BME96_14070 PF07969 Amidohydrolase family BME96_14075 PF00180 Isocitrate/isopropylmalate dehydrogenase BME96_14080 PF03553 Na+/H+ antiporter family BME96_14085 PF01168 Alanine racemase, N-terminal domain BME96_14085 PF00842 Alanine racemase, C-terminal domain BME96_14090 PF01063 Amino-transferase class IV BME96_14095 PF00291 Pyridoxal-phosphate dependent enzyme BME96_14100 PF07687 Peptidase dimerisation domain BME96_14100 PF01546 Peptidase family M20/M25/M40 BME96_14105 PF01042 Endoribonuclease L-PSP BME96_14110 PF00171 Aldehyde dehydrogenase family BME96_14115 PF00202 Aminotransferase class-III BME96_14120 PF07729 FCD domain BME96_14120 PF00392 Bacterial regulatory proteins, gntR family BME96_14125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BME96_14125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BME96_14130 PF01321 Creatinase/Prolidase N-terminal domain BME96_14130 PF00557 Metallopeptidase family M24 BME96_14135 PF00324 Amino acid permease BME96_14140 PF00248 Aldo/keto reductase family BME96_14155 PF00732 GMC oxidoreductase BME96_14155 PF05199 GMC oxidoreductase BME96_14165 PF00902 Sec-independent protein translocase protein (TatC) BME96_14170 PF07722 Peptidase C26 BME96_14175 PF07969 Amidohydrolase family BME96_14190 PF01520 N-acetylmuramoyl-L-alanine amidase BME96_14190 PF08239 Bacterial SH3 domain BME96_14195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_14195 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_14195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_14200 PF03466 LysR substrate binding domain BME96_14205 PF00202 Aminotransferase class-III BME96_14210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BME96_14210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BME96_14220 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_14220 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_14225 PF00005 ABC transporter BME96_14230 PF00528 Binding-protein-dependent transport system inner membrane component BME96_14235 PF00497 Bacterial extracellular solute-binding proteins, family 3 BME96_14240 PF00171 Aldehyde dehydrogenase family BME96_14245 PF03070 TENA/THI-4/PQQC family BME96_14250 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_14260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_14270 PF00115 Cytochrome C and Quinol oxidase polypeptide I BME96_14275 PF00510 Cytochrome c oxidase subunit III BME96_14285 PF03595 Voltage-dependent anion channel BME96_14290 PF13476 AAA domain BME96_14295 PF12320 Type 5 capsule protein repressor C-terminal domain BME96_14295 PF00149 Calcineurin-like phosphoesterase BME96_14310 PF01594 AI-2E family transporter BME96_14315 PF01047 MarR family BME96_14320 PF07690 Major Facilitator Superfamily BME96_14325 PF08543 Phosphomethylpyrimidine kinase BME96_14335 PF03649 Uncharacterised protein family (UPF0014) BME96_14350 PF10282 Lactonase, 7-bladed beta-propeller BME96_14360 PF00478 IMP dehydrogenase / GMP reductase domain BME96_14365 PF03466 LysR substrate binding domain BME96_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_14370 PF00491 Arginase family BME96_14375 PF03616 Sodium/glutamate symporter BME96_14380 PF13683 Integrase core domain BME96_14380 PF01610 Transposase BME96_14385 PF00294 pfkB family carbohydrate kinase BME96_14390 PF01791 DeoC/LacD family aldolase BME96_14395 PF01979 Amidohydrolase family BME96_14405 PF03613 PTS system mannose/fructose/sorbose family IID component BME96_14410 PF03609 PTS system sorbose-specific iic component BME96_14415 PF03830 PTS system sorbose subfamily IIB component BME96_14420 PF01380 SIS domain BME96_14435 PF02595 Glycerate kinase family BME96_14440 PF00480 ROK family BME96_14445 PF16347 Domain of unknown function (DUF4976) BME96_14445 PF00884 Sulfatase BME96_14450 PF17385 Lacto-N-biose phosphorylase central domain BME96_14450 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain BME96_14450 PF17386 Lacto-N-biose phosphorylase C-terminal domain BME96_14455 PF00528 Binding-protein-dependent transport system inner membrane component BME96_14460 PF00528 Binding-protein-dependent transport system inner membrane component BME96_14465 PF01547 Bacterial extracellular solute-binding protein BME96_14470 PF12833 Helix-turn-helix domain BME96_14470 PF02311 AraC-like ligand binding domain BME96_14475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_14485 PF00356 Bacterial regulatory proteins, lacI family BME96_14495 PF03816 Cell envelope-related transcriptional attenuator domain BME96_14505 PF01609 Transposase DDE domain BME96_14510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_14525 PF00535 Glycosyl transferase family 2 BME96_14530 PF01593 Flavin containing amine oxidoreductase BME96_14540 PF01593 Flavin containing amine oxidoreductase BME96_14545 PF13411 MerR HTH family regulatory protein BME96_14545 PF02607 B12 binding domain BME96_14550 PF03167 Uracil DNA glycosylase superfamily BME96_14555 PF02743 Cache domain BME96_14555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_14555 PF00672 HAMP domain BME96_14560 PF00860 Permease family BME96_14570 PF00309 Sigma-54 factor, Activator interacting domain (AID) BME96_14570 PF04963 Sigma-54 factor, core binding domain BME96_14570 PF04552 Sigma-54, DNA binding domain BME96_14580 PF01321 Creatinase/Prolidase N-terminal domain BME96_14580 PF00557 Metallopeptidase family M24 BME96_14595 PF03109 ABC1 family BME96_14600 PF07690 Major Facilitator Superfamily BME96_14615 PF12323 Helix-turn-helix domain BME96_14615 PF01385 Probable transposase BME96_14615 PF07282 Putative transposase DNA-binding domain BME96_14620 PF04203 Sortase domain BME96_14630 PF02632 BioY family BME96_14640 PF13031 Protein of unknown function (DUF3892) BME96_14645 PF03553 Na+/H+ antiporter family BME96_14650 PF01979 Amidohydrolase family BME96_14655 PF02954 Bacterial regulatory protein, Fis family BME96_14655 PF00158 Sigma-54 interaction domain BME96_14655 PF00989 PAS fold BME96_14660 PF00384 Molybdopterin oxidoreductase BME96_14660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BME96_14660 PF01568 Molydopterin dinucleotide binding domain BME96_14665 PF10057 Uncharacterized conserved protein (DUF2294) BME96_14670 PF06146 Phosphate-starvation-inducible E BME96_14675 PF01381 Helix-turn-helix BME96_14675 PF07883 Cupin domain BME96_14680 PF05684 Protein of unknown function (DUF819) BME96_14690 PF03358 NADPH-dependent FMN reductase BME96_14695 PF00474 Sodium:solute symporter family BME96_14700 PF00296 Luciferase-like monooxygenase BME96_14705 PF00171 Aldehyde dehydrogenase family BME96_14715 PF01979 Amidohydrolase family BME96_14720 PF17391 Urocanase N-terminal domain BME96_14720 PF17392 Urocanase C-terminal domain BME96_14720 PF01175 Urocanase Rossmann-like domain BME96_14725 PF02311 AraC-like ligand binding domain BME96_14725 PF12833 Helix-turn-helix domain BME96_14740 PF10127 RNA repair pathway DNA polymerase beta family BME96_14750 PF02096 60Kd inner membrane protein BME96_14755 PF00082 Subtilase family BME96_14760 PF07690 Major Facilitator Superfamily BME96_14765 PF01244 Membrane dipeptidase (Peptidase family M19) BME96_14770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BME96_14770 PF13378 Enolase C-terminal domain-like BME96_14775 PF00082 Subtilase family BME96_14780 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BME96_14785 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_14785 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_14790 PF08240 Alcohol dehydrogenase GroES-like domain BME96_14790 PF00107 Zinc-binding dehydrogenase BME96_14795 PF00296 Luciferase-like monooxygenase BME96_14800 PF02838 Glycosyl hydrolase family 20, domain 2 BME96_14800 PF07555 beta-N-acetylglucosaminidase BME96_14800 PF00754 F5/8 type C domain BME96_14800 PF00963 Cohesin domain BME96_14800 PF00041 Fibronectin type III domain BME96_14805 PF02589 LUD domain BME96_14810 PF13183 4Fe-4S dicluster domain BME96_14810 PF11870 Domain of unknown function (DUF3390) BME96_14810 PF02589 LUD domain BME96_14815 PF02754 Cysteine-rich domain BME96_14820 PF00392 Bacterial regulatory proteins, gntR family BME96_14820 PF07729 FCD domain BME96_14835 PF01380 SIS domain BME96_14835 PF01418 Helix-turn-helix domain, rpiR family BME96_14840 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BME96_14845 PF02378 Phosphotransferase system, EIIC BME96_14845 PF00367 phosphotransferase system, EIIB BME96_14845 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BME96_14850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BME96_14855 PF00480 ROK family BME96_14860 PF00701 Dihydrodipicolinate synthetase family BME96_14865 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BME96_14870 PF01418 Helix-turn-helix domain, rpiR family BME96_14870 PF01380 SIS domain BME96_14875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BME96_14880 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BME96_14880 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BME96_14885 PF03480 Bacterial extracellular solute-binding protein, family 7 BME96_14890 PF07859 alpha/beta hydrolase fold BME96_14965 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BME96_14965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BME96_15000 PF00196 Bacterial regulatory proteins, luxR family BME96_15000 PF00072 Response regulator receiver domain BME96_15020 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BME96_15020 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BME96_15025 PF00664 ABC transporter transmembrane region BME96_15025 PF00005 ABC transporter BME96_15035 PF00171 Aldehyde dehydrogenase family BME96_15040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_15040 PF00672 HAMP domain BME96_15040 PF02743 Cache domain BME96_15045 PF00754 F5/8 type C domain BME96_15045 PF02973 Sialidase, N-terminal domain BME96_15045 PF13088 BNR repeat-like domain BME96_15050 PF00356 Bacterial regulatory proteins, lacI family BME96_15065 PF00860 Permease family BME96_15070 PF01979 Amidohydrolase family BME96_15080 PF03611 PTS system sugar-specific permease component BME96_15090 PF00899 ThiF family BME96_15095 PF05690 Thiazole biosynthesis protein ThiG BME96_15100 PF01266 FAD dependent oxidoreductase BME96_15105 PF02581 Thiamine monophosphate synthase BME96_15115 PF00696 Amino acid kinase family BME96_15120 PF00144 Beta-lactamase BME96_15135 PF01418 Helix-turn-helix domain, rpiR family BME96_15135 PF01380 SIS domain BME96_15140 PF01380 SIS domain BME96_15145 PF07075 Protein of unknown function (DUF1343) BME96_15150 PF01915 Glycosyl hydrolase family 3 C-terminal domain BME96_15150 PF00933 Glycosyl hydrolase family 3 N terminal domain BME96_15155 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15160 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15180 PF13439 Glycosyltransferase Family 4 BME96_15180 PF00534 Glycosyl transferases group 1 BME96_15190 PF00069 Protein kinase domain BME96_15195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BME96_15195 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BME96_15195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BME96_15210 PF00535 Glycosyl transferase family 2 BME96_15220 PF16363 GDP-mannose 4,6 dehydratase BME96_15240 PF03806 AbgT putative transporter family BME96_15245 PF01261 Xylose isomerase-like TIM barrel BME96_15250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BME96_15250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BME96_15255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BME96_15255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BME96_15265 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BME96_15265 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BME96_15270 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15275 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15280 PF01547 Bacterial extracellular solute-binding protein BME96_15290 PF00356 Bacterial regulatory proteins, lacI family BME96_15295 PF01546 Peptidase family M20/M25/M40 BME96_15295 PF07687 Peptidase dimerisation domain BME96_15305 PF03606 C4-dicarboxylate anaerobic carrier BME96_15310 PF13378 Enolase C-terminal domain-like BME96_15310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BME96_15320 PF07969 Amidohydrolase family BME96_15330 PF00205 Thiamine pyrophosphate enzyme, central domain BME96_15330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BME96_15330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BME96_15335 PF00465 Iron-containing alcohol dehydrogenase BME96_15340 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BME96_15345 PF03480 Bacterial extracellular solute-binding protein, family 7 BME96_15360 PF01207 Dihydrouridine synthase (Dus) BME96_15375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BME96_15380 PF01638 HxlR-like helix-turn-helix BME96_15385 PF16347 Domain of unknown function (DUF4976) BME96_15385 PF00884 Sulfatase BME96_15390 PF00072 Response regulator receiver domain BME96_15390 PF00196 Bacterial regulatory proteins, luxR family BME96_15400 PF09084 NMT1/THI5 like BME96_15405 PF00005 ABC transporter BME96_15410 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15415 PF03781 Sulfatase-modifying factor enzyme 1 BME96_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_15420 PF03466 LysR substrate binding domain BME96_15425 PF01925 Sulfite exporter TauE/SafE BME96_15430 PF01156 Inosine-uridine preferring nucleoside hydrolase BME96_15440 PF03069 Acetamidase/Formamidase family BME96_15445 PF13726 Na+-H+ antiporter family BME96_15445 PF03553 Na+/H+ antiporter family BME96_15450 PF00221 Aromatic amino acid lyase BME96_15460 PF01546 Peptidase family M20/M25/M40 BME96_15460 PF07687 Peptidase dimerisation domain BME96_15465 PF01979 Amidohydrolase family BME96_15470 PF17391 Urocanase N-terminal domain BME96_15470 PF01175 Urocanase Rossmann-like domain BME96_15470 PF17392 Urocanase C-terminal domain BME96_15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_15475 PF03466 LysR substrate binding domain BME96_15485 PF01047 MarR family BME96_15490 PF03176 MMPL family BME96_15505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_15525 PF08281 Sigma-70, region 4 BME96_15525 PF04542 Sigma-70 region 2 BME96_15540 PF00005 ABC transporter BME96_15545 PF01032 FecCD transport family BME96_15550 PF01032 FecCD transport family BME96_15555 PF01497 Periplasmic binding protein BME96_15585 PF02838 Glycosyl hydrolase family 20, domain 2 BME96_15585 PF00754 F5/8 type C domain BME96_15585 PF00404 Dockerin type I domain BME96_15585 PF07555 beta-N-acetylglucosaminidase BME96_15590 PF07555 beta-N-acetylglucosaminidase BME96_15590 PF00404 Dockerin type I domain BME96_15590 PF02838 Glycosyl hydrolase family 20, domain 2 BME96_15590 PF00754 F5/8 type C domain BME96_15595 PF12389 Camelysin metallo-endopeptidase BME96_15600 PF00754 F5/8 type C domain BME96_15600 PF04650 YSIRK type signal peptide BME96_15600 PF12905 Endo-alpha-N-acetylgalactosaminidase BME96_15600 PF18080 Galactose mutarotase-like fold domain BME96_15600 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal BME96_15600 PF17451 Glycosyl hydrolase 101 beta sandwich domain BME96_15600 PF17974 Galactose-binding domain-like BME96_15605 PF17801 Alpha galactosidase C-terminal beta sandwich domain BME96_15605 PF16499 Alpha galactosidase A BME96_15610 PF00703 Glycosyl hydrolases family 2 BME96_15610 PF16353 Domain of unknown function(DUF4981) BME96_15610 PF02837 Glycosyl hydrolases family 2, sugar binding domain BME96_15610 PF02929 Beta galactosidase small chain BME96_15610 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BME96_15620 PF01116 Fructose-bisphosphate aldolase class-II BME96_15625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_15625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_15630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_15630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_15635 PF00294 pfkB family carbohydrate kinase BME96_15640 PF01418 Helix-turn-helix domain, rpiR family BME96_15640 PF01380 SIS domain BME96_15645 PF00171 Aldehyde dehydrogenase family BME96_15650 PF00701 Dihydrodipicolinate synthetase family BME96_15655 PF03553 Na+/H+ antiporter family BME96_15665 PF05544 Proline racemase BME96_15670 PF01266 FAD dependent oxidoreductase BME96_15675 PF00158 Sigma-54 interaction domain BME96_15675 PF13426 PAS domain BME96_15675 PF02954 Bacterial regulatory protein, Fis family BME96_15690 PF04324 BFD-like [2Fe-2S] binding domain BME96_15690 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_15695 PF04951 D-aminopeptidase BME96_15705 PF00128 Alpha amylase, catalytic domain BME96_15705 PF16657 Maltogenic Amylase, C-terminal domain BME96_15715 PF00356 Bacterial regulatory proteins, lacI family BME96_15720 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15725 PF00528 Binding-protein-dependent transport system inner membrane component BME96_15740 PF08378 Nuclease-related domain BME96_15745 PF13419 Haloacid dehalogenase-like hydrolase BME96_15750 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BME96_15750 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BME96_15755 PF00120 Glutamine synthetase, catalytic domain BME96_15755 PF03951 Glutamine synthetase, beta-Grasp domain BME96_15760 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_15760 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BME96_15765 PF01493 GXGXG motif BME96_15765 PF04898 Glutamate synthase central domain BME96_15765 PF00310 Glutamine amidotransferases class-II BME96_15765 PF01645 Conserved region in glutamate synthase BME96_15770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_15770 PF03466 LysR substrate binding domain BME96_15775 PF13537 Glutamine amidotransferase domain BME96_15775 PF00733 Asparagine synthase BME96_15780 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_15780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BME96_15795 PF14449 Pre-toxin TG BME96_15795 PF04740 LXG domain of WXG superfamily BME96_15820 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BME96_15865 PF03553 Na+/H+ antiporter family BME96_15870 PF00266 Aminotransferase class-V BME96_15880 PF13614 AAA domain BME96_15890 PF02278 Polysaccharide lyase family 8, super-sandwich domain BME96_15890 PF09093 Lyase, catalytic BME96_15890 PF09092 Lyase, N terminal BME96_15905 PF13378 Enolase C-terminal domain-like BME96_15905 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BME96_15915 PF01546 Peptidase family M20/M25/M40 BME96_15915 PF07687 Peptidase dimerisation domain BME96_15920 PF01418 Helix-turn-helix domain, rpiR family BME96_15920 PF01380 SIS domain BME96_15925 PF01381 Helix-turn-helix BME96_15930 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_15930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_15930 PF18158 Adaptive response protein AidB N-terminal domain BME96_15935 PF13193 AMP-binding enzyme C-terminal domain BME96_15935 PF00501 AMP-binding enzyme BME96_15940 PF13411 MerR HTH family regulatory protein BME96_15980 PF00158 Sigma-54 interaction domain BME96_15985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_16005 PF00669 Bacterial flagellin N-terminal helical region BME96_16005 PF00700 Bacterial flagellin C-terminal helical region BME96_16010 PF00700 Bacterial flagellin C-terminal helical region BME96_16010 PF00669 Bacterial flagellin N-terminal helical region BME96_16015 PF01381 Helix-turn-helix BME96_16030 PF01037 Lrp/AsnC ligand binding domain BME96_16040 PF00491 Arginase family BME96_16080 PF00535 Glycosyl transferase family 2 BME96_16080 PF01501 Glycosyl transferase family 8 BME96_16085 PF00534 Glycosyl transferases group 1 BME96_16085 PF17101 Stealth protein CR1, conserved region 1 BME96_16085 PF11380 Stealth protein CR2, conserved region 2 BME96_16085 PF17102 Stealth protein CR3, conserved region 3 BME96_16085 PF17103 Stealth protein CR4, conserved region 4 BME96_16090 PF00534 Glycosyl transferases group 1 BME96_16090 PF13579 Glycosyl transferase 4-like domain BME96_16100 PF13439 Glycosyltransferase Family 4 BME96_16100 PF00534 Glycosyl transferases group 1 BME96_16105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BME96_16105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BME96_16105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BME96_16115 PF02397 Bacterial sugar transferase BME96_16120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BME96_16125 PF00483 Nucleotidyl transferase BME96_16130 PF02719 Polysaccharide biosynthesis protein BME96_16135 PF00072 Response regulator receiver domain BME96_16135 PF00196 Bacterial regulatory proteins, luxR family BME96_16140 PF00196 Bacterial regulatory proteins, luxR family BME96_16140 PF00072 Response regulator receiver domain BME96_16150 PF13614 AAA domain BME96_16155 PF13807 G-rich domain on putative tyrosine kinase BME96_16155 PF02706 Chain length determinant protein BME96_16160 PF00877 NlpC/P60 family BME96_16160 PF01476 LysM domain BME96_16175 PF08240 Alcohol dehydrogenase GroES-like domain BME96_16175 PF00107 Zinc-binding dehydrogenase BME96_16205 PF00206 Lyase BME96_16205 PF14698 Argininosuccinate lyase C-terminal BME96_16210 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16215 PF00005 ABC transporter BME96_16215 PF08402 TOBE domain BME96_16225 PF01047 MarR family BME96_16225 PF00480 ROK family BME96_16240 PF00480 ROK family BME96_16240 PF01325 Iron dependent repressor, N-terminal DNA binding domain BME96_16250 PF00474 Sodium:solute symporter family BME96_16255 PF01238 Phosphomannose isomerase type I BME96_16260 PF00480 ROK family BME96_16265 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16270 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16280 PF12833 Helix-turn-helix domain BME96_16280 PF00072 Response regulator receiver domain BME96_16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_16285 PF06580 Histidine kinase BME96_16285 PF02743 Cache domain BME96_16285 PF00672 HAMP domain BME96_16290 PF13407 Periplasmic binding protein domain BME96_16295 PF00288 GHMP kinases N terminal domain BME96_16295 PF08544 GHMP kinases C terminal BME96_16295 PF10509 Galactokinase galactose-binding signature BME96_16305 PF16363 GDP-mannose 4,6 dehydratase BME96_16310 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BME96_16310 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BME96_16315 PF01263 Aldose 1-epimerase BME96_16320 PF03932 CutC family BME96_16325 PF08125 Mannitol dehydrogenase C-terminal domain BME96_16325 PF01232 Mannitol dehydrogenase Rossmann domain BME96_16330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_16335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_16335 PF08279 HTH domain BME96_16335 PF05043 Mga helix-turn-helix domain BME96_16335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_16335 PF00874 PRD domain BME96_16340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_16340 PF02378 Phosphotransferase system, EIIC BME96_16345 PF01894 Uncharacterised protein family UPF0047 BME96_16350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_16350 PF06580 Histidine kinase BME96_16355 PF17802 Prealbumin-like fold domain BME96_16355 PF05738 Cna protein B-type domain BME96_16355 PF05737 Collagen binding domain BME96_16360 PF04397 LytTr DNA-binding domain BME96_16360 PF00072 Response regulator receiver domain BME96_16385 PF03808 Glycosyl transferase WecB/TagA/CpsF family BME96_16390 PF03816 Cell envelope-related transcriptional attenuator domain BME96_16395 PF00953 Glycosyl transferase family 4 BME96_16400 PF00534 Glycosyl transferases group 1 BME96_16400 PF13439 Glycosyltransferase Family 4 BME96_16410 PF00535 Glycosyl transferase family 2 BME96_16430 PF03009 Glycerophosphoryl diester phosphodiesterase family BME96_16435 PF13360 PQQ-like domain BME96_16435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BME96_16440 PF00005 ABC transporter BME96_16440 PF08239 Bacterial SH3 domain BME96_16445 PF01061 ABC-2 type transporter BME96_16450 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BME96_16460 PF00483 Nucleotidyl transferase BME96_16465 PF00534 Glycosyl transferases group 1 BME96_16465 PF09318 Glycosyl transferase 1 domain A BME96_16470 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BME96_16475 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BME96_16475 PF13457 GW (Gly-Tryp) dipeptide domain BME96_16480 PF01467 Cytidylyltransferase-like BME96_16485 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BME96_16490 PF01467 Cytidylyltransferase-like BME96_16495 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BME96_16500 PF00884 Sulfatase BME96_16515 PF00082 Subtilase family BME96_16515 PF06280 Fn3-like domain BME96_16515 PF02225 PA domain BME96_16515 PF00746 LPXTG cell wall anchor motif BME96_16520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BME96_16520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BME96_16525 PF00953 Glycosyl transferase family 4 BME96_16535 PF09084 NMT1/THI5 like BME96_16545 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16550 PF00005 ABC transporter BME96_16560 PF17425 Arylsulfotransferase Ig-like domain BME96_16560 PF05935 Arylsulfotransferase (ASST) BME96_16570 PF00893 Small Multidrug Resistance protein BME96_16575 PF00893 Small Multidrug Resistance protein BME96_16580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_16585 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BME96_16590 PF02378 Phosphotransferase system, EIIC BME96_16595 PF02056 Family 4 glycosyl hydrolase BME96_16595 PF11975 Family 4 glycosyl hydrolase C-terminal domain BME96_16605 PF04794 YdjC-like protein BME96_16625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BME96_16625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BME96_16630 PF00873 AcrB/AcrD/AcrF family BME96_16640 PF00440 Bacterial regulatory proteins, tetR family BME96_16650 PF12732 YtxH-like protein BME96_16660 PF07977 FabA-like domain BME96_16670 PF00460 Flagella basal body rod protein BME96_16670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BME96_16675 PF00460 Flagella basal body rod protein BME96_16675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BME96_16690 PF12116 Stage III sporulation protein D BME96_16700 PF01551 Peptidase family M23 BME96_16705 PF08486 Stage II sporulation protein BME96_16710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_16710 PF00005 ABC transporter BME96_16715 PF00877 NlpC/P60 family BME96_16720 PF13378 Enolase C-terminal domain-like BME96_16720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BME96_16725 PF02016 LD-carboxypeptidase N-terminal domain BME96_16725 PF17676 LD-carboxypeptidase C-terminal domain BME96_16730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_16735 PF00005 ABC transporter BME96_16735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_16740 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16740 PF12911 N-terminal TM domain of oligopeptide transport permease C BME96_16745 PF00528 Binding-protein-dependent transport system inner membrane component BME96_16750 PF04951 D-aminopeptidase BME96_16755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BME96_16770 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BME96_16770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BME96_16775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BME96_16775 PF02874 ATP synthase alpha/beta family, beta-barrel domain BME96_16780 PF00231 ATP synthase BME96_16785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BME96_16785 PF00306 ATP synthase alpha/beta chain, C terminal domain BME96_16785 PF02874 ATP synthase alpha/beta family, beta-barrel domain BME96_16790 PF00213 ATP synthase delta (OSCP) subunit BME96_16795 PF00430 ATP synthase B/B' CF(0) BME96_16800 PF00137 ATP synthase subunit C BME96_16805 PF00119 ATP synthase A chain BME96_16810 PF03899 ATP synthase I chain BME96_16815 PF13860 FlgD Ig-like domain BME96_16815 PF00082 Subtilase family BME96_16815 PF05922 Peptidase inhibitor I9 BME96_16815 PF02225 PA domain BME96_16820 PF02350 UDP-N-acetylglucosamine 2-epimerase BME96_16830 PF00464 Serine hydroxymethyltransferase BME96_16835 PF04260 Protein of unknown function (DUF436) BME96_16840 PF02502 Ribose/Galactose Isomerase BME96_16845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BME96_16845 PF13426 PAS domain BME96_16845 PF08447 PAS fold BME96_16850 PF01451 Low molecular weight phosphotyrosine protein phosphatase BME96_16855 PF02659 Putative manganese efflux pump BME96_16860 PF01385 Probable transposase BME96_16860 PF07282 Putative transposase DNA-binding domain BME96_16860 PF12323 Helix-turn-helix domain BME96_16870 PF01300 Telomere recombination BME96_16870 PF03481 Putative GTP-binding controlling metal-binding BME96_16880 PF09551 Stage II sporulation protein R (spore_II_R) BME96_16885 PF13847 Methyltransferase domain BME96_16885 PF17827 PrmC N-terminal domain BME96_16890 PF03462 PCRF domain BME96_16890 PF00472 RF-1 domain BME96_16895 PF00265 Thymidine kinase BME96_16900 PF01197 Ribosomal protein L31 BME96_16905 PF07497 Rho termination factor, RNA-binding domain BME96_16905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BME96_16905 PF07498 Rho termination factor, N-terminal domain BME96_16910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BME96_16915 PF00923 Transaldolase/Fructose-6-phosphate aldolase BME96_16920 PF01116 Fructose-bisphosphate aldolase class-II BME96_16925 PF00072 Response regulator receiver domain BME96_16930 PF06418 CTP synthase N-terminus BME96_16930 PF00117 Glutamine amidotransferase class-I BME96_16935 PF05066 HB1, ASXL, restriction endonuclease HTH domain BME96_16945 PF02310 B12 binding domain BME96_16945 PF01642 Methylmalonyl-CoA mutase BME96_16960 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_16960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_16960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_16965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BME96_16965 PF02770 Acyl-CoA dehydrogenase, middle domain BME96_16965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BME96_16970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BME96_16970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BME96_16975 PF00108 Thiolase, N-terminal domain BME96_16975 PF02803 Thiolase, C-terminal domain BME96_16980 PF02754 Cysteine-rich domain BME96_16980 PF13183 4Fe-4S dicluster domain BME96_16985 PF05746 DALR anticodon binding domain BME96_16985 PF00750 tRNA synthetases class I (R) BME96_16985 PF03485 Arginyl tRNA synthetase N terminal domain BME96_16995 PF00491 Arginase family BME96_17005 PF00912 Transglycosylase BME96_17005 PF00905 Penicillin binding protein transpeptidase domain BME96_17010 PF08741 YwhD family BME96_17020 PF01966 HD domain BME96_17025 PF03099 Biotin/lipoate A/B protein ligase family BME96_17030 PF01515 Phosphate acetyl/butaryl transferase BME96_17040 PF09671 Spore coat protein (Spore_GerQ) BME96_17050 PF04241 Protein of unknown function (DUF423) BME96_17065 PF01645 Conserved region in glutamate synthase BME96_17075 PF03109 ABC1 family BME96_17090 PF01757 Acyltransferase family BME96_17100 PF02735 Ku70/Ku80 beta-barrel domain BME96_17105 PF01068 ATP dependent DNA ligase domain BME96_17110 PF00375 Sodium:dicarboxylate symporter family BME96_17115 PF02566 OsmC-like protein BME96_17125 PF04343 Protein of unknown function, DUF488 BME96_17130 PF03741 Integral membrane protein TerC family BME96_17135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BME96_17135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BME96_17135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BME96_17135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BME96_17140 PF01594 AI-2E family transporter BME96_17160 PF05525 Branched-chain amino acid transport protein BME96_17165 PF00271 Helicase conserved C-terminal domain BME96_17165 PF00570 HRDC domain BME96_17165 PF00270 DEAD/DEAH box helicase BME96_17165 PF16124 RecQ zinc-binding BME96_17165 PF09382 RQC domain BME96_17170 PF02073 Thermophilic metalloprotease (M29) BME96_17175 PF01235 Sodium:alanine symporter family BME96_17180 PF03061 Thioesterase superfamily BME96_17185 PF13091 PLD-like domain BME96_17185 PF13396 Phospholipase_D-nuclease N-terminal BME96_17190 PF01053 Cys/Met metabolism PLP-dependent enzyme BME96_17195 PF00892 EamA-like transporter family BME96_17200 PF01053 Cys/Met metabolism PLP-dependent enzyme BME96_17205 PF13472 GDSL-like Lipase/Acylhydrolase family BME96_17210 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) BME96_17215 PF05721 Phytanoyl-CoA dioxygenase (PhyH) BME96_17230 PF00005 ABC transporter BME96_17230 PF12848 ABC transporter BME96_17235 PF01370 NAD dependent epimerase/dehydratase family BME96_17240 PF00155 Aminotransferase class I and II BME96_17245 PF01476 LysM domain BME96_17245 PF06725 3D domain BME96_17245 PF06725 3D domain BME96_17245 PF01476 LysM domain BME96_17250 PF06207 Protein of unknown function (DUF1002) BME96_17255 PF07690 Major Facilitator Superfamily BME96_17265 PF00465 Iron-containing alcohol dehydrogenase BME96_17270 PF01042 Endoribonuclease L-PSP BME96_17285 PF01554 MatE BME96_17300 PF16868 NMT1-like family BME96_17305 PF13193 AMP-binding enzyme C-terminal domain BME96_17305 PF00501 AMP-binding enzyme BME96_17310 PF00005 ABC transporter BME96_17310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_17315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BME96_17315 PF00005 ABC transporter BME96_17320 PF00528 Binding-protein-dependent transport system inner membrane component BME96_17320 PF12911 N-terminal TM domain of oligopeptide transport permease C BME96_17325 PF00528 Binding-protein-dependent transport system inner membrane component BME96_17330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BME96_17340 PF03060 Nitronate monooxygenase BME96_17345 PF12419 SNF2 Helicase protein BME96_17345 PF00271 Helicase conserved C-terminal domain BME96_17345 PF00176 SNF2 family N-terminal domain BME96_17350 PF07690 Major Facilitator Superfamily BME96_17355 PF01418 Helix-turn-helix domain, rpiR family BME96_17355 PF01380 SIS domain BME96_17360 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BME96_17360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BME96_17365 PF02447 GntP family permease BME96_17370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BME96_17370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BME96_17380 PF03606 C4-dicarboxylate anaerobic carrier BME96_17385 PF00080 Copper/zinc superoxide dismutase (SODC) BME96_17395 PF00392 Bacterial regulatory proteins, gntR family BME96_17400 PF00005 ABC transporter BME96_17400 PF13732 Domain of unknown function (DUF4162) BME96_17415 PF03358 NADPH-dependent FMN reductase BME96_17420 PF01520 N-acetylmuramoyl-L-alanine amidase BME96_17420 PF08239 Bacterial SH3 domain BME96_17430 PF13649 Methyltransferase domain BME96_17450 PF13302 Acetyltransferase (GNAT) domain BME96_17465 PF00268 Ribonucleotide reductase, small chain BME96_17470 PF00258 Flavodoxin BME96_17475 PF03477 ATP cone domain BME96_17475 PF00317 Ribonucleotide reductase, all-alpha domain BME96_17475 PF02867 Ribonucleotide reductase, barrel domain BME96_17480 PF03466 LysR substrate binding domain BME96_17480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_17485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_17485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BME96_17490 PF00005 ABC transporter BME96_17490 PF09383 NIL domain BME96_17510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BME96_17510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BME96_17515 PF05853 beta-keto acid cleavage enzyme BME96_17520 PF02028 BCCT, betaine/carnitine/choline family transporter BME96_17525 PF00753 Metallo-beta-lactamase superfamily BME96_17530 PF04239 Protein of unknown function (DUF421) BME96_17535 PF00733 Asparagine synthase BME96_17535 PF13537 Glutamine amidotransferase domain BME96_17545 PF08281 Sigma-70, region 4 BME96_17545 PF04542 Sigma-70 region 2 BME96_17550 PF02634 FdhD/NarQ family BME96_17565 PF01235 Sodium:alanine symporter family BME96_17575 PF00990 Diguanylate cyclase, GGDEF domain BME96_17585 PF04055 Radical SAM superfamily BME96_17590 PF00296 Luciferase-like monooxygenase BME96_17595 PF03358 NADPH-dependent FMN reductase BME96_17600 PF01435 Peptidase family M48 BME96_17610 PF00795 Carbon-nitrogen hydrolase BME96_17615 PF00072 Response regulator receiver domain BME96_17615 PF00196 Bacterial regulatory proteins, luxR family BME96_17620 PF07730 Histidine kinase BME96_17625 PF00487 Fatty acid desaturase BME96_17630 PF11553 Protein of unknown function (DUF3231) BME96_17640 PF13307 Helicase C-terminal domain BME96_17645 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BME96_17645 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BME96_17650 PF04397 LytTr DNA-binding domain BME96_17650 PF00072 Response regulator receiver domain BME96_17660 PF07992 Pyridine nucleotide-disulphide oxidoreductase BME96_17665 PF13333 Integrase core domain BME96_17665 PF13276 HTH-like domain BME96_17665 PF00665 Integrase core domain BME96_17675 PF04172 LrgB-like family BME96_17680 PF03788 LrgA family BME96_17685 PF00206 Lyase BME96_17685 PF14698 Argininosuccinate lyase C-terminal BME96_17690 PF00764 Arginosuccinate synthase BME96_17695 PF00893 Small Multidrug Resistance protein BME96_17700 PF00893 Small Multidrug Resistance protein BME96_17705 PF17934 Tetracyclin repressor-like, C-terminal domain BME96_17705 PF00440 Bacterial regulatory proteins, tetR family BME96_17725 PF12849 PBP superfamily domain BME96_17730 PF00528 Binding-protein-dependent transport system inner membrane component BME96_17735 PF00528 Binding-protein-dependent transport system inner membrane component BME96_17740 PF00005 ABC transporter BME96_17745 PF02080 TrkA-C domain BME96_17745 PF00999 Sodium/hydrogen exchanger family BME96_17745 PF03471 Transporter associated domain BME96_17750 PF01520 N-acetylmuramoyl-L-alanine amidase BME96_17750 PF05036 Sporulation related domain BME96_17760 PF04239 Protein of unknown function (DUF421) BME96_17770 PF11553 Protein of unknown function (DUF3231) BME96_17775 PF07690 Major Facilitator Superfamily BME96_17795 PF04542 Sigma-70 region 2 BME96_17795 PF04545 Sigma-70, region 4 BME96_17815 PF00294 pfkB family carbohydrate kinase BME96_17820 PF00356 Bacterial regulatory proteins, lacI family BME96_17825 PF02378 Phosphotransferase system, EIIC BME96_17825 PF00367 phosphotransferase system, EIIB BME96_17830 PF00251 Glycosyl hydrolases family 32 N-terminal domain BME96_17830 PF08244 Glycosyl hydrolases family 32 C terminal BME96_17835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BME96_17840 PF16242 Pyridoxamine 5'-phosphate oxidase like BME96_17845 PF00294 pfkB family carbohydrate kinase BME96_17850 PF01156 Inosine-uridine preferring nucleoside hydrolase BME96_17855 PF03606 C4-dicarboxylate anaerobic carrier BME96_17860 PF00356 Bacterial regulatory proteins, lacI family BME96_17870 PF00581 Rhodanese-like domain BME96_17875 PF01259 SAICAR synthetase BME96_17880 PF01661 Macro domain BME96_17905 PF03061 Thioesterase superfamily BME96_17925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BME96_17925 PF03466 LysR substrate binding domain BME96_17930 PF12727 PBP superfamily domain BME96_17930 PF12728 Helix-turn-helix domain BME96_17940 PF00528 Binding-protein-dependent transport system inner membrane component BME96_17945 PF03459 TOBE domain BME96_17945 PF00005 ABC transporter BME96_17955 PF00682 HMGL-like BME96_17965 PF00874 PRD domain BME96_17965 PF03123 CAT RNA binding domain BME96_17970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BME96_17970 PF00367 phosphotransferase system, EIIB BME96_17970 PF02378 Phosphotransferase system, EIIC BME96_17980 PF03960 ArsC family BME96_17995 PF13115 YtkA-like BME96_18000 PF02630 SCO1/SenC BME96_18005 PF00455 DeoR C terminal sensor domain BME96_18005 PF08220 DeoR-like helix-turn-helix domain BME96_18015 PF02683 Cytochrome C biogenesis protein transmembrane region BME96_18020 PF00578 AhpC/TSA family BME96_18025 PF00486 Transcriptional regulatory protein, C terminal BME96_18025 PF00072 Response regulator receiver domain BME96_18030 PF00672 HAMP domain BME96_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_18030 PF00512 His Kinase A (phospho-acceptor) domain BME96_18035 PF00801 PKD domain BME96_18035 PF05547 Immune inhibitor A peptidase M6 BME96_18040 PF00581 Rhodanese-like domain BME96_18045 PF01925 Sulfite exporter TauE/SafE BME96_18050 PF01206 Sulfurtransferase TusA BME96_18055 PF00581 Rhodanese-like domain BME96_18055 PF00753 Metallo-beta-lactamase superfamily BME96_18060 PF13686 DsrE/DsrF/DrsH-like family BME96_18065 PF00581 Rhodanese-like domain BME96_18065 PF01206 Sulfurtransferase TusA BME96_18070 PF00581 Rhodanese-like domain BME96_18075 PF13686 DsrE/DsrF/DrsH-like family BME96_18080 PF02583 Metal-sensitive transcriptional repressor BME96_18090 PF00571 CBS domain BME96_18090 PF03471 Transporter associated domain BME96_18090 PF01595 Cyclin M transmembrane N-terminal domain BME96_18095 PF08141 Small acid-soluble spore protein H family BME96_18105 PF02146 Sir2 family BME96_18110 PF14005 YpjP-like protein BME96_18115 PF00753 Metallo-beta-lactamase superfamily BME96_18115 PF00581 Rhodanese-like domain BME96_18120 PF00583 Acetyltransferase (GNAT) family BME96_18135 PF04293 SpoVR like protein BME96_18145 PF04285 Protein of unknown function (DUF444) BME96_18150 PF08298 PrkA AAA domain BME96_18150 PF06798 PrkA serine protein kinase C-terminal domain BME96_18155 PF00528 Binding-protein-dependent transport system inner membrane component BME96_18160 PF00528 Binding-protein-dependent transport system inner membrane component BME96_18165 PF00005 ABC transporter BME96_18175 PF02811 PHP domain BME96_18180 PF00005 ABC transporter BME96_18185 PF07969 Amidohydrolase family BME96_18190 PF00005 ABC transporter BME96_18195 PF06007 Phosphonate metabolism protein PhnJ BME96_18200 PF05861 Bacterial phosphonate metabolism protein (PhnI) BME96_18220 PF00392 Bacterial regulatory proteins, gntR family BME96_18220 PF07702 UTRA domain BME96_18230 PF01048 Phosphorylase superfamily BME96_18260 PF00005 ABC transporter BME96_18265 PF01497 Periplasmic binding protein BME96_18270 PF01032 FecCD transport family BME96_18275 PF01032 FecCD transport family BME96_18295 PF04204 Homoserine O-succinyltransferase BME96_18300 PF00375 Sodium:dicarboxylate symporter family BME96_18305 PF00701 Dihydrodipicolinate synthetase family BME96_18310 PF02386 Cation transport protein BME96_18315 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BME96_18320 PF00999 Sodium/hydrogen exchanger family BME96_18325 PF07690 Major Facilitator Superfamily BME96_18330 PF00478 IMP dehydrogenase / GMP reductase domain BME96_18330 PF00571 CBS domain BME96_18335 PF01047 MarR family BME96_18345 PF08220 DeoR-like helix-turn-helix domain BME96_18345 PF00455 DeoR C terminal sensor domain BME96_18350 PF00294 pfkB family carbohydrate kinase BME96_18355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_18355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_18365 PF02829 3H domain BME96_18365 PF08279 HTH domain BME96_18370 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BME96_18370 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BME96_18390 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BME96_18390 PF01740 STAS domain BME96_18410 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BME96_18410 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BME96_18415 PF02681 Divergent PAP2 family BME96_18420 PF07687 Peptidase dimerisation domain BME96_18420 PF01546 Peptidase family M20/M25/M40 BME96_18445 PF00311 Phosphoenolpyruvate carboxylase BME96_18485 PF00563 EAL domain BME96_18485 PF12792 CSS motif domain associated with EAL BME96_18495 PF12796 Ankyrin repeats (3 copies) BME96_18500 PF07969 Amidohydrolase family BME96_18505 PF13460 NAD(P)H-binding BME96_18510 PF00403 Heavy-metal-associated domain BME96_18515 PF00403 Heavy-metal-associated domain BME96_18520 PF13545 Crp-like helix-turn-helix domain BME96_18520 PF00027 Cyclic nucleotide-binding domain BME96_18535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BME96_18545 PF05199 GMC oxidoreductase BME96_18545 PF00732 GMC oxidoreductase BME96_18555 PF13538 UvrD-like helicase C-terminal domain BME96_18560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BME96_18560 PF00874 PRD domain BME96_18560 PF05043 Mga helix-turn-helix domain BME96_18560 PF08279 HTH domain BME96_18565 PF02056 Family 4 glycosyl hydrolase BME96_18565 PF11975 Family 4 glycosyl hydrolase C-terminal domain BME96_18570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BME96_18575 PF02378 Phosphotransferase system, EIIC BME96_18580 PF04794 YdjC-like protein BME96_18585 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BME96_18590 PF07075 Protein of unknown function (DUF1343) BME96_18605 PF07486 Cell Wall Hydrolase BME96_18620 PF02590 Predicted SPOUT methyltransferase BME96_18625 PF02915 Rubrerythrin BME96_18635 PF01329 Pterin 4 alpha carbinolamine dehydratase BME96_18645 PF00890 FAD binding domain BME96_18650 PF01070 FMN-dependent dehydrogenase BME96_18670 PF00563 EAL domain BME96_18670 PF00990 Diguanylate cyclase, GGDEF domain BME96_18670 PF03707 Bacterial signalling protein N terminal repeat BME96_18705 PF00664 ABC transporter transmembrane region BME96_18705 PF00005 ABC transporter BME96_18715 PF13180 PDZ domain BME96_18720 PF00753 Metallo-beta-lactamase superfamily BME96_18725 PF09648 YycH protein BME96_18730 PF07435 YycH protein BME96_18735 PF13426 PAS domain BME96_18735 PF00512 His Kinase A (phospho-acceptor) domain BME96_18735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BME96_18735 PF00672 HAMP domain BME96_18740 PF00486 Transcriptional regulatory protein, C terminal BME96_18740 PF00072 Response regulator receiver domain BME96_18745 PF00709 Adenylosuccinate synthetase BME96_18750 PF03796 DnaB-like helicase C terminal domain BME96_18750 PF00772 DnaB-like helicase N terminal domain BME96_18755 PF03948 Ribosomal protein L9, C-terminal domain BME96_18755 PF01281 Ribosomal protein L9, N-terminal domain BME96_18760 PF02272 DHHA1 domain BME96_18760 PF01368 DHH family BME96_18765 PF09991 Predicted membrane protein (DUF2232) BME96_18775 PF01084 Ribosomal protein S18 BME96_18780 PF00436 Single-strand binding protein family BME96_18785 PF01250 Ribosomal protein S6 BME96_18790 PF01926 50S ribosome-binding GTPase BME96_18790 PF06071 Protein of unknown function (DUF933) BME96_18795 PF06107 Bacterial protein of unknown function (DUF951) BME96_18800 PF00924 Mechanosensitive ion channel BME96_18810 PF06866 Protein of unknown function (DUF1256) BME96_18820 PF00266 Aminotransferase class-V BME96_18825 PF02195 ParB-like nuclease domain BME96_18825 PF17762 HTH domain found in ParB protein BME96_18830 PF13614 AAA domain BME96_18835 PF02195 ParB-like nuclease domain BME96_18835 PF17762 HTH domain found in ParB protein BME96_18840 PF02527 rRNA small subunit methyltransferase G BME96_18845 PF13932 GidA associated domain BME96_18845 PF01134 Glucose inhibited division protein A BME96_18850 PF12631 MnmE helical domain BME96_18850 PF10396 GTP-binding protein TrmE N-terminus BME96_18850 PF01926 50S ribosome-binding GTPase BME96_18855 PF02225 PA domain BME96_18855 PF04389 Peptidase family M28 BME96_18860 PF14804 Jag N-terminus BME96_18860 PF01424 R3H domain BME96_18865 PF02096 60Kd inner membrane protein BME96_18870 PF00825 Ribonuclease P BME96_18875 PF00468 Ribosomal protein L34 BME96_18890 PF17632 Family of unknown function (DUF5513) BME96_18920 PF18840 Large polyvalent protein associated domain 25 BME96_18930 PF13154 Protein of unknown function (DUF3991) BME96_18940 PF01131 DNA topoisomerase BME96_18940 PF01751 Toprim domain BME96_18960 PF13614 AAA domain BME96_18965 PF13614 AAA domain BME96_19035 PF00239 Resolvase, N terminal domain BME96_19035 PF18010 Cry35Ab1 HTH C-terminal domain BME96_19070 PF00437 Type II/IV secretion system protein BME96_19095 PF04956 TrbC/VIRB2 family BME96_19110 PF12696 TraM recognition site of TraD and TraG