BME96_00010 SM00480 DNA polymerase III beta subunit BME96_00035 SM00387 Histidine kinase-like ATPases BME96_00035 SM00433 TopoisomeraseII BME96_00040 SM00434 DNA Topoisomerase IV BME96_00055 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_00055 SM01240 BME96_00055 BME96_00060 SM00936 Penicillin-binding protein 5, C-terminal domain BME96_00080 SM00382 ATPases associated with a variety of cellular activities BME96_00080 SM00930 BME96_00080 BME96_00105 SM00954 Region found in RelA / SpoT proteins BME96_00170 SM00257 Lysin motif BME96_00170 SM00636 BME96_00170 BME96_00195 SM00382 ATPases associated with a variety of cellular activities BME96_00205 SM00493 BME96_00205 BME96_00280 SM00966 SpoVT / AbrB like domain BME96_00295 SM01208 BME96_00295 BME96_00305 SM00493 BME96_00305 BME96_00310 SM00650 Ribosomal RNA adenine dimethylases BME96_00350 SM01400 BME96_00350 BME96_00370 SM00487 DEAD-like helicases superfamily BME96_00370 SM00490 helicase superfamily c-terminal domain BME96_00370 SM00982 BME96_00370 BME96_00370 SM01058 CarD-like/TRCF domain BME96_00375 SM00966 SpoVT / AbrB like domain BME96_00390 SM00363 S4 RNA-binding domain BME96_00395 SM00387 Histidine kinase-like ATPases BME96_00415 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_00425 SM00331 Sigma factor PP2C-like phosphatases BME96_00425 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BME96_00435 SM00220 Serine/Threonine protein kinases, catalytic domain BME96_00440 SM00977 TilS substrate C-terminal domain BME96_00450 SM00382 ATPases associated with a variety of cellular activities BME96_00480 SM00905 Dihydroneopterin aldolase BME96_00490 SM00530 Helix-turn-helix XRE-family like proteins BME96_00595 SM00382 ATPases associated with a variety of cellular activities BME96_00595 SM01086 C-terminal, D2-small domain, of ClpB protein BME96_00600 SM00382 ATPases associated with a variety of cellular activities BME96_00605 SM00670 Large family of predicted nucleotide-binding domains BME96_00620 SM00840 BME96_00620 BME96_00625 SM00535 Ribonuclease III family BME96_00630 SM00967 RNA 2'-O ribose methyltransferase substrate binding BME96_00650 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BME96_00650 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BME96_00660 SM00649 Ribosomal protein L11/L12 BME96_00690 SM00663 RNA polymerase I subunit A N-terminus BME96_00710 SM00838 Elongation factor G C-terminus BME96_00710 SM00889 Elongation factor G, domain IV BME96_00720 SM01403 BME96_00720 BME96_00740 SM01382 BME96_00740 BME96_00740 SM01383 BME96_00740 BME96_00755 SM00322 K homology RNA-binding domain BME96_00775 SM01374 BME96_00775 BME96_00780 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BME96_00840 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_00860 SM00662 RNA polymerases D BME96_00870 SM00382 ATPases associated with a variety of cellular activities BME96_00875 SM00382 ATPases associated with a variety of cellular activities BME96_00985 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BME96_01010 SM00327 von Willebrand factor (vWF) type A domain BME96_01055 SM00646 BME96_01055 BME96_01070 SM01251 BME96_01070 BME96_01240 SM00448 cheY-homologous receiver domain BME96_01240 SM00862 Transcriptional regulatory protein, C terminal BME96_01245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_01245 SM00387 Histidine kinase-like ATPases BME96_01245 SM00388 His Kinase A (phosphoacceptor) domain BME96_01255 SM00382 ATPases associated with a variety of cellular activities BME96_01290 SM00382 ATPases associated with a variety of cellular activities BME96_01310 SM00267 diguanylate cyclase BME96_01330 SM00382 ATPases associated with a variety of cellular activities BME96_01335 SM00382 ATPases associated with a variety of cellular activities BME96_01350 SM00382 ATPases associated with a variety of cellular activities BME96_01370 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BME96_01400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BME96_01400 SM00091 PAS domain BME96_01410 SM00421 helix_turn_helix, Lux Regulon BME96_01410 SM00448 cheY-homologous receiver domain BME96_01420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BME96_01420 SM00091 PAS domain BME96_01420 SM00387 Histidine kinase-like ATPases BME96_01425 SM00342 helix_turn_helix, arabinose operon control protein BME96_01440 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_01440 SM00895 BME96_01440 BME96_01445 SM01060 BME96_01445 BME96_01465 SM00567 E-Z type HEAT repeats BME96_01465 SM00932 Scaffold protein Nfu/NifU N terminal BME96_01580 SM00422 helix_turn_helix, mercury resistance BME96_01670 SM00849 Metallo-beta-lactamase superfamily BME96_01685 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_01690 SM00382 ATPases associated with a variety of cellular activities BME96_01725 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_01805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_01840 SM00450 Rhodanese Homology Domain BME96_01850 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_01850 SM00876 Biotin and Thiamin Synthesis associated domain BME96_01860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_01860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_01885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_01890 SM01240 BME96_01890 BME96_01900 SM00849 Metallo-beta-lactamase superfamily BME96_01920 SM00382 ATPases associated with a variety of cellular activities BME96_01980 SM00481 DNA polymerase alpha chain like domain BME96_02000 SM00382 ATPases associated with a variety of cellular activities BME96_02015 SM00062 Bacterial periplasmic substrate-binding proteins BME96_02035 SM01207 BME96_02035 BME96_02060 SM00946 Prolyl-tRNA synthetase, C-terminal BME96_02070 SM00062 Bacterial periplasmic substrate-binding proteins BME96_02070 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BME96_02080 SM00382 ATPases associated with a variety of cellular activities BME96_02085 SM00382 ATPases associated with a variety of cellular activities BME96_02105 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BME96_02105 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BME96_02110 SM00450 Rhodanese Homology Domain BME96_02125 SM00357 Cold shock protein domain BME96_02160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_02165 SM00448 cheY-homologous receiver domain BME96_02165 SM00862 Transcriptional regulatory protein, C terminal BME96_02170 SM00387 Histidine kinase-like ATPases BME96_02170 SM00388 His Kinase A (phosphoacceptor) domain BME96_02175 SM00838 Elongation factor G C-terminus BME96_02185 SM00642 Alpha-amylase domain BME96_02190 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_02190 SM00866 BME96_02190 BME96_02210 SM00382 ATPases associated with a variety of cellular activities BME96_02235 SM00854 Bacterial capsule synthesis protein PGA_cap BME96_02255 SM00448 cheY-homologous receiver domain BME96_02255 SM00862 Transcriptional regulatory protein, C terminal BME96_02260 SM00387 Histidine kinase-like ATPases BME96_02260 SM00388 His Kinase A (phosphoacceptor) domain BME96_02270 SM00046 Diacylglycerol kinase catalytic domain (presumed) BME96_02275 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_02310 SM00487 DEAD-like helicases superfamily BME96_02310 SM00490 helicase superfamily c-terminal domain BME96_02335 SM01005 Alanine racemase, C-terminal domain BME96_02360 SM00387 Histidine kinase-like ATPases BME96_02365 SM00331 Sigma factor PP2C-like phosphatases BME96_02365 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BME96_02385 SM00331 Sigma factor PP2C-like phosphatases BME96_02390 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_02390 SM00732 Likely ribonuclease with RNase H fold. BME96_02395 SM01060 BME96_02395 BME96_02400 SM00731 SprT homologues. BME96_02520 SM00382 ATPases associated with a variety of cellular activities BME96_02530 SM00881 CoA binding domain BME96_02545 SM00883 Chaperonin 10 Kd subunit BME96_02570 SM00422 helix_turn_helix, mercury resistance BME96_02595 SM00382 ATPases associated with a variety of cellular activities BME96_02600 SM00448 cheY-homologous receiver domain BME96_02600 SM00862 Transcriptional regulatory protein, C terminal BME96_02605 SM00387 Histidine kinase-like ATPases BME96_02605 SM00388 His Kinase A (phosphoacceptor) domain BME96_02610 SM00382 ATPases associated with a variety of cellular activities BME96_02630 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BME96_02700 SM00460 Transglutaminase/protease-like homologues BME96_02745 SM01001 AIR carboxylase BME96_02755 SM00998 Adenylosuccinate lyase C-terminus BME96_02770 SM01211 BME96_02770 BME96_02795 SM00798 AICARFT/IMPCHase bienzyme BME96_02795 SM00851 MGS-like domain BME96_02800 SM01209 BME96_02800 BME96_02800 SM01210 BME96_02800 BME96_02835 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BME96_02835 SM00292 breast cancer carboxy-terminal domain BME96_02835 SM00532 Ligase N family BME96_02850 SM00028 Tetratricopeptide repeats BME96_02850 SM00530 Helix-turn-helix XRE-family like proteins BME96_02870 SM00845 GatB domain BME96_02875 SM00046 Diacylglycerol kinase catalytic domain (presumed) BME96_02940 SM00357 Cold shock protein domain BME96_02950 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_02990 SM00098 Alkaline phosphatase homologues BME96_03000 SM00382 ATPases associated with a variety of cellular activities BME96_03060 SM00346 helix_turn_helix isocitrate lyase regulation BME96_03150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BME96_03150 SM00091 PAS domain BME96_03150 SM00267 diguanylate cyclase BME96_03165 SM00382 ATPases associated with a variety of cellular activities BME96_03165 SM01086 C-terminal, D2-small domain, of ClpB protein BME96_03170 SM00849 Metallo-beta-lactamase superfamily BME96_03175 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_03180 SM00382 ATPases associated with a variety of cellular activities BME96_03195 SM00382 ATPases associated with a variety of cellular activities BME96_03210 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_03215 SM00530 Helix-turn-helix XRE-family like proteins BME96_03255 SM00478 endonuclease III BME96_03270 SM00382 ATPases associated with a variety of cellular activities BME96_03490 SM01131 BME96_03490 BME96_03560 SM01022 BME96_03560 BME96_03585 SM00342 helix_turn_helix, arabinose operon control protein BME96_03660 SM00860 SMI1 / KNR4 family BME96_03740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BME96_03835 SM00479 BME96_03835 BME96_03905 SM00829 Enoylreductase BME96_03910 SM00986 Uracil DNA glycosylase superfamily BME96_03910 SM00987 UreE urease accessory protein, C-terminal domain BME96_03950 SM00859 Semialdehyde dehydrogenase, NAD binding domain BME96_03970 SM00851 MGS-like domain BME96_03970 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BME96_03990 SM00100 Cyclic nucleotide-monophosphate binding domain BME96_03990 SM00419 helix_turn_helix, cAMP Regulatory protein BME96_04005 SM00567 E-Z type HEAT repeats BME96_04025 SM00861 Transketolase, pyrimidine binding domain BME96_04070 SM00947 Carbonic anhydrase BME96_04080 SM00382 ATPases associated with a variety of cellular activities BME96_04085 SM00382 ATPases associated with a variety of cellular activities BME96_04155 SM00382 ATPases associated with a variety of cellular activities BME96_04190 SM00914 BME96_04190 BME96_04215 SM00382 ATPases associated with a variety of cellular activities BME96_04240 SM00382 ATPases associated with a variety of cellular activities BME96_04265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_04300 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_04300 SM00382 ATPases associated with a variety of cellular activities BME96_04335 SM00382 ATPases associated with a variety of cellular activities BME96_04355 SM00014 Acid phosphatase homologues BME96_04370 SM00387 Histidine kinase-like ATPases BME96_04375 SM00421 helix_turn_helix, Lux Regulon BME96_04375 SM00448 cheY-homologous receiver domain BME96_04435 SM00849 Metallo-beta-lactamase superfamily BME96_04545 SM00642 Alpha-amylase domain BME96_04575 SM00932 Scaffold protein Nfu/NifU N terminal BME96_04635 SM00100 Cyclic nucleotide-monophosphate binding domain BME96_04635 SM00419 helix_turn_helix, cAMP Regulatory protein BME96_04650 SM00100 Cyclic nucleotide-monophosphate binding domain BME96_04650 SM00419 helix_turn_helix, cAMP Regulatory protein BME96_04685 SM00825 Beta-ketoacyl synthase BME96_04765 SM01118 BME96_04765 BME96_04770 SM00954 Region found in RelA / SpoT proteins BME96_04790 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_04790 SM00924 MgtE intracellular N domain BME96_04840 SM00382 ATPases associated with a variety of cellular activities BME96_04845 SM00382 ATPases associated with a variety of cellular activities BME96_04855 SM01060 BME96_04855 BME96_04895 SM00382 ATPases associated with a variety of cellular activities BME96_04895 SM00930 BME96_04895 BME96_04990 SM00382 ATPases associated with a variety of cellular activities BME96_05015 SM00829 Enoylreductase BME96_05055 SM00642 Alpha-amylase domain BME96_05260 SM01321 BME96_05260 BME96_05305 SM00829 Enoylreductase BME96_05310 SM00318 Staphylococcal nuclease homologues BME96_05385 SM00382 ATPases associated with a variety of cellular activities BME96_05390 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_05405 SM00382 ATPases associated with a variety of cellular activities BME96_05435 SM00855 Phosphoglycerate mutase family BME96_05485 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BME96_05655 SM00028 Tetratricopeptide repeats BME96_05720 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_05765 SM00530 Helix-turn-helix XRE-family like proteins BME96_05775 SM00422 helix_turn_helix, mercury resistance BME96_05840 SM00448 cheY-homologous receiver domain BME96_05840 SM00862 Transcriptional regulatory protein, C terminal BME96_05845 SM00382 ATPases associated with a variety of cellular activities BME96_05855 SM00387 Histidine kinase-like ATPases BME96_05855 SM00388 His Kinase A (phosphoacceptor) domain BME96_05875 SM00725 NEAr Transporter domain BME96_05880 SM00867 YceI-like domain BME96_05900 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_05990 SM01120 BME96_05990 BME96_06030 SM00382 ATPases associated with a variety of cellular activities BME96_06035 SM00850 LytTr DNA-binding domain BME96_06040 SM01266 BME96_06040 BME96_06065 SM00342 helix_turn_helix, arabinose operon control protein BME96_06120 SM00382 ATPases associated with a variety of cellular activities BME96_06175 SM00487 DEAD-like helicases superfamily BME96_06175 SM00490 helicase superfamily c-terminal domain BME96_06195 SM00487 DEAD-like helicases superfamily BME96_06195 SM00490 helicase superfamily c-terminal domain BME96_06235 SM00155 Phospholipase D. Active site motifs. BME96_06340 SM00530 Helix-turn-helix XRE-family like proteins BME96_06375 SM00855 Phosphoglycerate mutase family BME96_06385 SM00382 ATPases associated with a variety of cellular activities BME96_06415 SM00382 ATPases associated with a variety of cellular activities BME96_06435 SM00829 Enoylreductase BME96_06445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_06490 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_06530 SM00448 cheY-homologous receiver domain BME96_06530 SM00862 Transcriptional regulatory protein, C terminal BME96_06535 SM00387 Histidine kinase-like ATPases BME96_06535 SM00388 His Kinase A (phosphoacceptor) domain BME96_06620 SM00478 endonuclease III BME96_06775 SM01207 BME96_06775 BME96_06790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_06800 SM00226 Low molecular weight phosphatase family BME96_06895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_06920 SM00387 Histidine kinase-like ATPases BME96_06920 SM00388 His Kinase A (phosphoacceptor) domain BME96_06925 SM00448 cheY-homologous receiver domain BME96_06925 SM00862 Transcriptional regulatory protein, C terminal BME96_06950 SM00450 Rhodanese Homology Domain BME96_06990 SM00382 ATPases associated with a variety of cellular activities BME96_07085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BME96_07085 SM00091 PAS domain BME96_07190 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_07230 SM00363 S4 RNA-binding domain BME96_07260 SM00849 Metallo-beta-lactamase superfamily BME96_07300 SM00382 ATPases associated with a variety of cellular activities BME96_07300 SM00843 BME96_07300 BME96_07325 SM00830 Chorismate mutase type II BME96_07330 SM00354 helix_turn _helix lactose operon repressor BME96_07350 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_07365 SM00363 S4 RNA-binding domain BME96_07370 SM00363 S4 RNA-binding domain BME96_07370 SM01390 BME96_07370 BME96_07375 SM00267 diguanylate cyclase BME96_07400 SM00981 BME96_07400 BME96_07440 SM00852 Probable molybdopterin binding domain BME96_07475 SM00849 Metallo-beta-lactamase superfamily BME96_07500 SM00382 ATPases associated with a variety of cellular activities BME96_07540 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_07570 SM00481 DNA polymerase alpha chain like domain BME96_07575 SM00919 Malic enzyme, NAD binding domain BME96_07575 SM01274 BME96_07575 BME96_07580 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_07620 SM01329 BME96_07620 BME96_07635 SM00448 cheY-homologous receiver domain BME96_07635 SM00862 Transcriptional regulatory protein, C terminal BME96_07640 SM00091 PAS domain BME96_07640 SM00387 Histidine kinase-like ATPases BME96_07640 SM00388 His Kinase A (phosphoacceptor) domain BME96_07645 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BME96_07645 SM00474 3'-5' exonuclease BME96_07645 SM00475 5'-3' exonuclease BME96_07645 SM00482 DNA polymerase A domain BME96_07650 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BME96_07650 SM01232 BME96_07650 BME96_07660 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BME96_07685 SM00382 ATPases associated with a variety of cellular activities BME96_07695 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BME96_07745 SM00382 ATPases associated with a variety of cellular activities BME96_07770 SM00967 RNA 2'-O ribose methyltransferase substrate binding BME96_07780 SM00873 B3/4 domain BME96_07780 SM00874 tRNA synthetase B5 domain BME96_07780 SM00896 Ferredoxin-fold anticodon binding domain BME96_07800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BME96_07800 SM00481 DNA polymerase alpha chain like domain BME96_07800 SM00483 DNA polymerase X family BME96_07805 SM00463 Small MutS-related domain BME96_07805 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BME96_07805 SM00534 ATPase domain of DNA mismatch repair MUTS family BME96_07830 SM00893 Electron transfer flavoprotein domain BME96_07835 SM00893 Electron transfer flavoprotein domain BME96_07845 SM00465 GIY-YIG type nucleases (URI domain) BME96_07875 SM00421 helix_turn_helix, Lux Regulon BME96_07880 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_07890 SM00909 Sporulation and spore germination BME96_07935 SM00382 ATPases associated with a variety of cellular activities BME96_07935 SM00994 ClpX C4-type zinc finger BME96_07935 SM01086 C-terminal, D2-small domain, of ClpB protein BME96_07940 SM00382 ATPases associated with a variety of cellular activities BME96_07940 SM00464 Found in ATP-dependent protease La (LON) BME96_07950 SM00062 Bacterial periplasmic substrate-binding proteins BME96_07950 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BME96_07960 SM00382 ATPases associated with a variety of cellular activities BME96_07990 SM01004 Delta-aminolevulinic acid dehydratase BME96_08135 SM00257 Lysin motif BME96_08160 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BME96_08165 SM00382 ATPases associated with a variety of cellular activities BME96_08185 SM01323 BME96_08185 BME96_08235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_08235 SM00954 Region found in RelA / SpoT proteins BME96_08245 SM00287 Bacterial SH3 domain homologues BME96_08245 SM00646 BME96_08245 BME96_08270 SM00382 ATPases associated with a variety of cellular activities BME96_08290 SM00028 Tetratricopeptide repeats BME96_08310 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BME96_08320 SM00732 Likely ribonuclease with RNase H fold. BME96_08420 SM01103 BME96_08420 BME96_08430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_08445 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BME96_08455 SM00849 Metallo-beta-lactamase superfamily BME96_08485 SM00838 Elongation factor G C-terminus BME96_08490 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_08510 SM00271 DnaJ molecular chaperone homology domain BME96_08525 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_08530 SM01133 BME96_08530 BME96_08575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_08610 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_08620 SM00400 zinc finger BME96_08620 SM00493 BME96_08620 BME96_08650 SM00487 DEAD-like helicases superfamily BME96_08650 SM00490 helicase superfamily c-terminal domain BME96_08655 SM00518 AP endonuclease family 2 BME96_08760 SM00028 Tetratricopeptide repeats BME96_08790 SM00849 Metallo-beta-lactamase superfamily BME96_08800 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_08840 SM00857 Resolvase, N terminal domain BME96_08845 SM00530 Helix-turn-helix XRE-family like proteins BME96_08875 SM00382 ATPases associated with a variety of cellular activities BME96_08915 SM00507 HNH nucleases BME96_09105 SM00487 DEAD-like helicases superfamily BME96_09105 SM00490 helicase superfamily c-terminal domain BME96_09125 SM00450 Rhodanese Homology Domain BME96_09135 SM00529 Helix-turn-helix diphteria tox regulatory element BME96_09160 SM00841 Elongation factor P, C-terminal BME96_09160 SM01185 BME96_09160 BME96_09165 SM00382 ATPases associated with a variety of cellular activities BME96_09210 SM00878 Biotin carboxylase C-terminal domain BME96_09250 SM00363 S4 RNA-binding domain BME96_09265 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_09270 SM00448 cheY-homologous receiver domain BME96_09285 SM00091 PAS domain BME96_09285 SM00382 ATPases associated with a variety of cellular activities BME96_09295 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_09315 SM00861 Transketolase, pyrimidine binding domain BME96_09390 SM00849 Metallo-beta-lactamase superfamily BME96_09450 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BME96_09455 SM00936 Penicillin-binding protein 5, C-terminal domain BME96_09540 SM00363 S4 RNA-binding domain BME96_09560 SM00448 cheY-homologous receiver domain BME96_09560 SM00862 Transcriptional regulatory protein, C terminal BME96_09565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_09565 SM00387 Histidine kinase-like ATPases BME96_09565 SM00388 His Kinase A (phosphoacceptor) domain BME96_09585 SM00487 DEAD-like helicases superfamily BME96_09585 SM00490 helicase superfamily c-terminal domain BME96_09610 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_09620 SM00870 BME96_09620 BME96_09650 SM00563 Phosphate acyltransferases BME96_09655 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_09705 SM00411 bacterial (prokaryotic) histone like domain BME96_09730 SM00562 BME96_09730 BME96_09735 SM00138 Methyltransferase, chemotaxis proteins BME96_09770 SM00028 Tetratricopeptide repeats BME96_09775 SM00914 BME96_09775 BME96_09830 SM00851 MGS-like domain BME96_09865 SM00479 BME96_09865 BME96_09865 SM00487 DEAD-like helicases superfamily BME96_09865 SM00491 BME96_09865 BME96_09895 SM00478 endonuclease III BME96_09900 SM00060 Fibronectin type 3 domain BME96_09940 SM00981 BME96_09940 BME96_09985 SM00357 Cold shock protein domain BME96_09995 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_10060 SM00257 Lysin motif BME96_10060 SM00631 BME96_10060 BME96_10090 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BME96_10130 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BME96_10130 SM00475 5'-3' exonuclease BME96_10140 SM00903 Flavin reductase like domain BME96_10160 SM00878 Biotin carboxylase C-terminal domain BME96_10180 SM00434 DNA Topoisomerase IV BME96_10185 SM00387 Histidine kinase-like ATPases BME96_10185 SM00433 TopoisomeraseII BME96_10190 SM00881 CoA binding domain BME96_10200 SM00382 ATPases associated with a variety of cellular activities BME96_10205 SM01207 BME96_10205 BME96_10215 SM01234 BME96_10215 BME96_10245 SM00091 PAS domain BME96_10245 SM00387 Histidine kinase-like ATPases BME96_10245 SM00388 His Kinase A (phosphoacceptor) domain BME96_10260 SM00448 cheY-homologous receiver domain BME96_10285 SM00861 Transketolase, pyrimidine binding domain BME96_10295 SM00857 Resolvase, N terminal domain BME96_10305 SM01230 BME96_10305 BME96_10310 SM00422 helix_turn_helix, mercury resistance BME96_10325 SM00382 ATPases associated with a variety of cellular activities BME96_10345 SM00853 MutL C terminal dimerisation domain BME96_10345 SM01340 BME96_10345 BME96_10350 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BME96_10350 SM00534 ATPase domain of DNA mismatch repair MUTS family BME96_10360 SM01321 BME96_10360 BME96_10375 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_10390 SM00322 K homology RNA-binding domain BME96_10390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_10395 SM00382 ATPases associated with a variety of cellular activities BME96_10400 SM00852 Probable molybdopterin binding domain BME96_10450 SM00382 ATPases associated with a variety of cellular activities BME96_10460 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_10460 SM00866 BME96_10460 BME96_10465 SM00382 ATPases associated with a variety of cellular activities BME96_10465 SM00843 BME96_10465 BME96_10480 SM01130 BME96_10480 BME96_10490 SM00859 Semialdehyde dehydrogenase, NAD binding domain BME96_10520 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_10520 SM00322 K homology RNA-binding domain BME96_10525 SM01387 BME96_10525 BME96_10530 SM00904 Riboflavin kinase BME96_10565 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_10565 SM00322 K homology RNA-binding domain BME96_10580 SM00479 BME96_10580 BME96_10580 SM00481 DNA polymerase alpha chain like domain BME96_10585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_10645 SM00260 Two component signalling adaptor domain BME96_10650 SM00448 cheY-homologous receiver domain BME96_10660 SM00382 ATPases associated with a variety of cellular activities BME96_10660 SM00962 SRP54-type protein, GTPase domain BME96_10695 SM00448 cheY-homologous receiver domain BME96_10750 SM00382 ATPases associated with a variety of cellular activities BME96_10790 SM00382 ATPases associated with a variety of cellular activities BME96_10790 SM01086 C-terminal, D2-small domain, of ClpB protein BME96_10815 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BME96_10815 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BME96_10815 SM00493 BME96_10815 BME96_10825 SM00881 CoA binding domain BME96_10890 SM00382 ATPases associated with a variety of cellular activities BME96_10890 SM00962 SRP54-type protein, GTPase domain BME96_10890 SM00963 SRP54-type protein, helical bundle domain BME96_10900 SM00382 ATPases associated with a variety of cellular activities BME96_10900 SM00962 SRP54-type protein, GTPase domain BME96_10900 SM00963 SRP54-type protein, helical bundle domain BME96_10905 SM00968 SMC proteins Flexible Hinge Domain BME96_10915 SM00358 Double-stranded RNA binding motif BME96_10915 SM00535 Ribonuclease III family BME96_10925 SM00822 BME96_10925 BME96_10930 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BME96_10945 SM00487 DEAD-like helicases superfamily BME96_10945 SM00490 helicase superfamily c-terminal domain BME96_10965 SM01120 BME96_10965 BME96_10965 SM01121 BME96_10965 BME96_10985 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BME96_11000 SM00220 Serine/Threonine protein kinases, catalytic domain BME96_11000 SM00740 BME96_11000 BME96_11005 SM00331 Sigma factor PP2C-like phosphatases BME96_11005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BME96_11020 SM00487 DEAD-like helicases superfamily BME96_11020 SM00490 helicase superfamily c-terminal domain BME96_11030 SM01409 BME96_11030 BME96_11035 SM00072 Guanylate kinase homologues. BME96_11045 SM00831 Cation transporter/ATPase, N-terminus BME96_11070 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BME96_11085 SM00851 MGS-like domain BME96_11085 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BME96_11090 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BME96_11110 SM00363 S4 RNA-binding domain BME96_11135 SM00363 S4 RNA-binding domain BME96_11180 SM00864 Tubulin/FtsZ family, GTPase domain BME96_11180 SM00865 Tubulin/FtsZ family, C-terminal domain BME96_11185 SM00842 Cell division protein FtsA BME96_11220 SM00740 BME96_11220 BME96_11225 SM00740 BME96_11225 BME96_11290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_11385 SM00878 Biotin carboxylase C-terminal domain BME96_11475 SM00861 Transketolase, pyrimidine binding domain BME96_11505 SM00849 Metallo-beta-lactamase superfamily BME96_11520 SM00382 ATPases associated with a variety of cellular activities BME96_11525 SM00382 ATPases associated with a variety of cellular activities BME96_11560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_11660 SM00729 Elongator protein 3, MiaB family, Radical SAM BME96_11665 SM00852 Probable molybdopterin binding domain BME96_11715 SM00829 Enoylreductase BME96_11740 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BME96_11740 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BME96_11745 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_11780 SM00028 Tetratricopeptide repeats BME96_11820 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BME96_11820 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BME96_11820 SM00493 BME96_11820 BME96_11945 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BME96_11965 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_11965 SM00382 ATPases associated with a variety of cellular activities BME96_12040 SM00881 CoA binding domain BME96_12045 SM00530 Helix-turn-helix XRE-family like proteins BME96_12070 SM00450 Rhodanese Homology Domain BME96_12110 SM00382 ATPases associated with a variety of cellular activities BME96_12135 SM00382 ATPases associated with a variety of cellular activities BME96_12210 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_12240 SM01298 BME96_12240 BME96_12375 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_12405 SM00530 Helix-turn-helix XRE-family like proteins BME96_12455 SM00710 Parallel beta-helix repeats BME96_12535 SM00507 HNH nucleases BME96_12600 SM00849 Metallo-beta-lactamase superfamily BME96_12650 SM00530 Helix-turn-helix XRE-family like proteins BME96_12655 SM00530 Helix-turn-helix XRE-family like proteins BME96_12690 SM00382 ATPases associated with a variety of cellular activities BME96_12705 SM00382 ATPases associated with a variety of cellular activities BME96_12705 SM00930 BME96_12705 BME96_12770 SM00382 ATPases associated with a variety of cellular activities BME96_12820 SM00421 helix_turn_helix, Lux Regulon BME96_12820 SM00448 cheY-homologous receiver domain BME96_12825 SM00387 Histidine kinase-like ATPases BME96_12870 SM00530 Helix-turn-helix XRE-family like proteins BME96_12935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_12935 SM00387 Histidine kinase-like ATPases BME96_12935 SM00388 His Kinase A (phosphoacceptor) domain BME96_12980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_12980 SM00387 Histidine kinase-like ATPases BME96_12980 SM00388 His Kinase A (phosphoacceptor) domain BME96_12985 SM00448 cheY-homologous receiver domain BME96_12985 SM00862 Transcriptional regulatory protein, C terminal BME96_12995 SM00226 Low molecular weight phosphatase family BME96_13015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_13040 SM00422 helix_turn_helix, mercury resistance BME96_13045 SM00450 Rhodanese Homology Domain BME96_13065 SM00226 Low molecular weight phosphatase family BME96_13075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_13080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BME96_13115 SM00382 ATPases associated with a variety of cellular activities BME96_13120 SM00316 Ribosomal protein S1-like RNA-binding domain BME96_13120 SM00357 Cold shock protein domain BME96_13120 SM00955 BME96_13120 BME96_13155 SM01192 BME96_13155 BME96_13155 SM01193 BME96_13155 BME96_13175 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BME96_13220 SM00882 Coenzyme A transferase BME96_13225 SM00882 Coenzyme A transferase BME96_13235 SM00091 PAS domain BME96_13235 SM00382 ATPases associated with a variety of cellular activities BME96_13295 SM00028 Tetratricopeptide repeats BME96_13360 SM00382 ATPases associated with a variety of cellular activities BME96_13365 SM00487 DEAD-like helicases superfamily BME96_13365 SM00490 helicase superfamily c-terminal domain BME96_13380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_13380 SM00245 tail specific protease BME96_13395 SM00382 ATPases associated with a variety of cellular activities BME96_13405 SM00937 BME96_13405 BME96_13410 SM00957 SecA DEAD-like domain BME96_13410 SM00958 SecA preprotein cross-linking domain BME96_13480 SM00487 DEAD-like helicases superfamily BME96_13480 SM00490 helicase superfamily c-terminal domain BME96_13490 SM00421 helix_turn_helix, Lux Regulon BME96_13490 SM00448 cheY-homologous receiver domain BME96_13495 SM00387 Histidine kinase-like ATPases BME96_13525 SM00530 Helix-turn-helix XRE-family like proteins BME96_13570 SM00914 BME96_13570 BME96_13605 SM00797 Allophanate hydrolase subunit 2 BME96_13615 SM00796 Allophanate hydrolase subunit 1 BME96_13650 SM00421 helix_turn_helix, Lux Regulon BME96_13655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_13655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_13660 SM00052 Putative diguanylate phosphodiesterase BME96_13665 SM00448 cheY-homologous receiver domain BME96_13670 SM00260 Two component signalling adaptor domain BME96_13675 SM00073 Histidine Phosphotransfer domain BME96_13675 SM00260 Two component signalling adaptor domain BME96_13675 SM00387 Histidine kinase-like ATPases BME96_13675 SM01231 BME96_13675 BME96_13695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_13740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_13835 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BME96_13835 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BME96_13835 SM00493 BME96_13835 BME96_13900 SM00448 cheY-homologous receiver domain BME96_13905 SM00091 PAS domain BME96_13905 SM00387 Histidine kinase-like ATPases BME96_13955 SM00382 ATPases associated with a variety of cellular activities BME96_13960 SM00382 ATPases associated with a variety of cellular activities BME96_14035 SM01329 BME96_14035 BME96_14040 SM00917 LeuA allosteric (dimerisation) domain BME96_14075 SM01329 BME96_14075 BME96_14085 SM01005 Alanine racemase, C-terminal domain BME96_14120 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_14120 SM00895 BME96_14120 BME96_14190 SM00646 BME96_14190 BME96_14210 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BME96_14210 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BME96_14215 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_14215 SM00866 BME96_14215 BME96_14225 SM00382 ATPases associated with a variety of cellular activities BME96_14235 SM00062 Bacterial periplasmic substrate-binding proteins BME96_14235 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BME96_14315 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_14330 SM00382 ATPases associated with a variety of cellular activities BME96_14360 SM01240 BME96_14360 BME96_14390 SM01133 BME96_14390 BME96_14425 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_14425 SM00866 BME96_14425 BME96_14470 SM00342 helix_turn_helix, arabinose operon control protein BME96_14485 SM00354 helix_turn _helix lactose operon repressor BME96_14545 SM00422 helix_turn_helix, mercury resistance BME96_14550 SM00986 Uracil DNA glycosylase superfamily BME96_14550 SM00987 UreE urease accessory protein, C-terminal domain BME96_14555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_14555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_14555 SM01049 BME96_14555 BME96_14655 SM00091 PAS domain BME96_14655 SM00382 ATPases associated with a variety of cellular activities BME96_14675 SM00530 Helix-turn-helix XRE-family like proteins BME96_14725 SM00342 helix_turn_helix, arabinose operon control protein BME96_14770 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BME96_14790 SM00829 Enoylreductase BME96_14820 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_14820 SM00895 BME96_14820 BME96_14860 SM01130 BME96_14860 BME96_14990 SM00052 Putative diguanylate phosphodiesterase BME96_15000 SM00421 helix_turn_helix, Lux Regulon BME96_15005 SM00287 Bacterial SH3 domain homologues BME96_15025 SM00382 ATPases associated with a variety of cellular activities BME96_15040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_15040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_15050 SM00354 helix_turn _helix lactose operon repressor BME96_15190 SM00220 Serine/Threonine protein kinases, catalytic domain BME96_15195 SM00984 UDP binding domain BME96_15290 SM00354 helix_turn _helix lactose operon repressor BME96_15310 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BME96_15350 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_15350 SM00866 BME96_15350 BME96_15390 SM00421 helix_turn_helix, Lux Regulon BME96_15390 SM00448 cheY-homologous receiver domain BME96_15395 SM00387 Histidine kinase-like ATPases BME96_15405 SM00382 ATPases associated with a variety of cellular activities BME96_15435 SM00849 Metallo-beta-lactamase superfamily BME96_15440 SM00834 Putative regulatory protein BME96_15485 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_15540 SM00382 ATPases associated with a variety of cellular activities BME96_15580 SM00560 LamG-like jellyroll fold domain BME96_15605 SM00776 BME96_15605 BME96_15610 SM00776 BME96_15610 BME96_15610 SM01038 Beta galactosidase small chain BME96_15650 SM01130 BME96_15650 BME96_15675 SM00091 PAS domain BME96_15675 SM00382 ATPases associated with a variety of cellular activities BME96_15705 SM00642 Alpha-amylase domain BME96_15715 SM00354 helix_turn _helix lactose operon repressor BME96_15735 SM00488 BME96_15735 BME96_15735 SM00491 BME96_15735 BME96_15750 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BME96_15755 SM01230 BME96_15755 BME96_15830 SM00631 BME96_15830 BME96_15875 SM00100 Cyclic nucleotide-monophosphate binding domain BME96_15875 SM00419 helix_turn_helix, cAMP Regulatory protein BME96_15905 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BME96_15925 SM00530 Helix-turn-helix XRE-family like proteins BME96_15940 SM00422 helix_turn_helix, mercury resistance BME96_15950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BME96_16015 SM00530 Helix-turn-helix XRE-family like proteins BME96_16030 SM00344 helix_turn_helix ASNC type BME96_16050 SM00530 Helix-turn-helix XRE-family like proteins BME96_16105 SM00984 UDP binding domain BME96_16135 SM00421 helix_turn_helix, Lux Regulon BME96_16140 SM00421 helix_turn_helix, Lux Regulon BME96_16140 SM00448 cheY-homologous receiver domain BME96_16160 SM00257 Lysin motif BME96_16175 SM00829 Enoylreductase BME96_16215 SM00382 ATPases associated with a variety of cellular activities BME96_16280 SM00342 helix_turn_helix, arabinose operon control protein BME96_16280 SM00448 cheY-homologous receiver domain BME96_16285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_16285 SM00387 Histidine kinase-like ATPases BME96_16350 SM00387 Histidine kinase-like ATPases BME96_16350 SM00388 His Kinase A (phosphoacceptor) domain BME96_16350 SM00448 cheY-homologous receiver domain BME96_16360 SM00448 cheY-homologous receiver domain BME96_16360 SM00862 Transcriptional regulatory protein, C terminal BME96_16360 SM01043 Bacterial transcriptional activator domain BME96_16435 SM00564 beta-propeller repeat BME96_16440 SM00382 ATPases associated with a variety of cellular activities BME96_16475 SM00047 Lysozyme subfamily 2 BME96_16475 SM00287 Bacterial SH3 domain homologues BME96_16520 SM01350 BME96_16520 BME96_16550 SM00382 ATPases associated with a variety of cellular activities BME96_16600 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_16600 SM00866 BME96_16600 BME96_16710 SM00382 ATPases associated with a variety of cellular activities BME96_16720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BME96_16735 SM00382 ATPases associated with a variety of cellular activities BME96_16775 SM00382 ATPases associated with a variety of cellular activities BME96_16845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BME96_16845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_16850 SM00226 Low molecular weight phosphatase family BME96_16865 SM01321 BME96_16865 BME96_16890 SM00937 BME96_16890 BME96_16905 SM00357 Cold shock protein domain BME96_16905 SM00382 ATPases associated with a variety of cellular activities BME96_16905 SM00959 Rho termination factor, N-terminal domain BME96_16925 SM00448 cheY-homologous receiver domain BME96_16985 SM00836 DALR anticodon binding domain BME96_16985 SM01016 Arginyl tRNA synthetase N terminal dom BME96_17020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BME96_17100 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BME96_17165 SM00341 Helicase and RNase D C-terminal BME96_17165 SM00487 DEAD-like helicases superfamily BME96_17165 SM00490 helicase superfamily c-terminal domain BME96_17165 SM00956 BME96_17165 BME96_17185 SM00155 Phospholipase D. Active site motifs. BME96_17230 SM00382 ATPases associated with a variety of cellular activities BME96_17245 SM00257 Lysin motif BME96_17310 SM00382 ATPases associated with a variety of cellular activities BME96_17315 SM00382 ATPases associated with a variety of cellular activities BME96_17345 SM00487 DEAD-like helicases superfamily BME96_17345 SM00490 helicase superfamily c-terminal domain BME96_17360 SM01350 BME96_17360 BME96_17395 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_17400 SM00382 ATPases associated with a variety of cellular activities BME96_17420 SM00287 Bacterial SH3 domain homologues BME96_17420 SM00646 BME96_17420 BME96_17430 SM00422 helix_turn_helix, mercury resistance BME96_17485 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BME96_17490 SM00382 ATPases associated with a variety of cellular activities BME96_17525 SM00849 Metallo-beta-lactamase superfamily BME96_17570 SM01060 BME96_17570 BME96_17575 SM00267 diguanylate cyclase BME96_17615 SM00421 helix_turn_helix, Lux Regulon BME96_17615 SM00448 cheY-homologous receiver domain BME96_17640 SM00491 BME96_17640 BME96_17650 SM00850 LytTr DNA-binding domain BME96_17715 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_17720 SM00478 endonuclease III BME96_17740 SM00382 ATPases associated with a variety of cellular activities BME96_17750 SM00646 BME96_17750 BME96_17820 SM00354 helix_turn _helix lactose operon repressor BME96_17830 SM00640 Glycosyl hydrolases family 32 BME96_17860 SM00354 helix_turn _helix lactose operon repressor BME96_17870 SM00450 Rhodanese Homology Domain BME96_17880 SM00506 Appr-1"-p processing enzyme BME96_17945 SM00382 ATPases associated with a variety of cellular activities BME96_17950 SM00530 Helix-turn-helix XRE-family like proteins BME96_17965 SM01061 CAT RNA binding domain BME96_18005 SM00420 helix_turn_helix, Deoxyribose operon repressor BME96_18025 SM00448 cheY-homologous receiver domain BME96_18025 SM00862 Transcriptional regulatory protein, C terminal BME96_18030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_18030 SM00387 Histidine kinase-like ATPases BME96_18030 SM00388 His Kinase A (phosphoacceptor) domain BME96_18040 SM00450 Rhodanese Homology Domain BME96_18055 SM00450 Rhodanese Homology Domain BME96_18055 SM00849 Metallo-beta-lactamase superfamily BME96_18065 SM00450 Rhodanese Homology Domain BME96_18070 SM00450 Rhodanese Homology Domain BME96_18090 SM01091 Transporter associated domain BME96_18115 SM00450 Rhodanese Homology Domain BME96_18115 SM00849 Metallo-beta-lactamase superfamily BME96_18125 SM00855 Phosphoglycerate mutase family BME96_18150 SM00763 PrkA AAA domain BME96_18165 SM00382 ATPases associated with a variety of cellular activities BME96_18175 SM00481 DNA polymerase alpha chain like domain BME96_18180 SM00382 ATPases associated with a variety of cellular activities BME96_18190 SM00382 ATPases associated with a variety of cellular activities BME96_18220 SM00345 helix_turn_helix gluconate operon transcriptional repressor BME96_18220 SM00866 BME96_18220 BME96_18260 SM00382 ATPases associated with a variety of cellular activities BME96_18305 SM01130 BME96_18305 BME96_18330 SM00116 Domain in cystathionine beta-synthase and other proteins. BME96_18335 SM00347 helix_turn_helix multiple antibiotic resistance protein BME96_18345 SM00420 helix_turn_helix, Deoxyribose operon repressor BME96_18345 SM01134 BME96_18345 BME96_18425 SM00014 Acid phosphatase homologues BME96_18485 SM00052 Putative diguanylate phosphodiesterase BME96_18495 SM00248 ankyrin repeats BME96_18520 SM00100 Cyclic nucleotide-monophosphate binding domain BME96_18520 SM00419 helix_turn_helix, cAMP Regulatory protein BME96_18525 SM00822 BME96_18525 BME96_18670 SM00052 Putative diguanylate phosphodiesterase BME96_18670 SM00267 diguanylate cyclase BME96_18705 SM00382 ATPases associated with a variety of cellular activities BME96_18715 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BME96_18720 SM00849 Metallo-beta-lactamase superfamily BME96_18735 SM00091 PAS domain BME96_18735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BME96_18735 SM00387 Histidine kinase-like ATPases BME96_18735 SM00388 His Kinase A (phosphoacceptor) domain BME96_18740 SM00448 cheY-homologous receiver domain BME96_18740 SM00862 Transcriptional regulatory protein, C terminal BME96_18745 SM00788 Adenylosuccinate synthetase BME96_18760 SM00267 diguanylate cyclase BME96_18825 SM00470 ParB-like nuclease domain BME96_18835 SM00470 ParB-like nuclease domain BME96_18845 SM01228 BME96_18845 BME96_18860 SM00393 Putative single-stranded nucleic acids-binding domain BME96_18860 SM01245 BME96_18860 BME96_18940 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BME96_18940 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BME96_18940 SM00493 BME96_18940 BME96_18950 SM00857 Resolvase, N terminal domain BME96_19035 SM00857 Resolvase, N terminal domain