A21D_00010	SM00507	HNH nucleases
A21D_00016	SM00487	DEAD-like helicases superfamily
A21D_00017	SM00990	A21D_00017
A21D_00024	SM00482	DNA polymerase A domain
A21D_00036	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00039	SM01040	BRO family, N-terminal domain
A21D_00049	SM00382	ATPases associated with a variety of cellular activities
A21D_00053	SM00382	ATPases associated with a variety of cellular activities
A21D_00053	SM00930	A21D_00053
A21D_00062	SM00382	ATPases associated with a variety of cellular activities
A21D_00074	SM00421	helix_turn_helix, Lux Regulon
A21D_00074	SM00448	cheY-homologous receiver domain
A21D_00075	SM00387	Histidine kinase-like ATPases
A21D_00083	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_00087	SM00448	cheY-homologous receiver domain
A21D_00087	SM00862	Transcriptional regulatory protein, C terminal
A21D_00088	SM00387	Histidine kinase-like ATPases
A21D_00089	SM00382	ATPases associated with a variety of cellular activities
A21D_00094	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_00094	SM00357	Cold shock protein domain
A21D_00094	SM00955	A21D_00094
A21D_00100	SM00382	ATPases associated with a variety of cellular activities
A21D_00104	SM01192	A21D_00104
A21D_00104	SM01193	A21D_00104
A21D_00108	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A21D_00119	SM00797	Allophanate hydrolase subunit 2
A21D_00120	SM00796	Allophanate hydrolase subunit 1
A21D_00148	SM00382	ATPases associated with a variety of cellular activities
A21D_00149	SM00487	DEAD-like helicases superfamily
A21D_00149	SM00490	helicase superfamily c-terminal domain
A21D_00153	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_00153	SM00245	tail specific protease
A21D_00156	SM00382	ATPases associated with a variety of cellular activities
A21D_00158	SM00937	A21D_00158
A21D_00159	SM00957	SecA DEAD-like domain
A21D_00159	SM00958	SecA preprotein cross-linking domain
A21D_00160	SM00342	helix_turn_helix, arabinose operon control protein
A21D_00178	SM00487	DEAD-like helicases superfamily
A21D_00178	SM00490	helicase superfamily c-terminal domain
A21D_00181	SM00421	helix_turn_helix, Lux Regulon
A21D_00185	SM00421	helix_turn_helix, Lux Regulon
A21D_00185	SM00448	cheY-homologous receiver domain
A21D_00186	SM00387	Histidine kinase-like ATPases
A21D_00191	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00207	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00207	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_00208	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00223	SM00354	helix_turn _helix lactose operon repressor
A21D_00228	SM00642	Alpha-amylase domain
A21D_00240	SM00382	ATPases associated with a variety of cellular activities
A21D_00241	SM00062	Bacterial periplasmic substrate-binding proteins
A21D_00248	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A21D_00248	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A21D_00248	SM00493	A21D_00248
A21D_00257	SM00344	helix_turn_helix ASNC type
A21D_00258	SM00387	Histidine kinase-like ATPases
A21D_00259	SM00448	cheY-homologous receiver domain
A21D_00259	SM00850	LytTr DNA-binding domain
A21D_00262	SM01120	A21D_00262
A21D_00272	SM00382	ATPases associated with a variety of cellular activities
A21D_00273	SM00382	ATPases associated with a variety of cellular activities
A21D_00275	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00286	SM00342	helix_turn_helix, arabinose operon control protein
A21D_00295	SM01329	A21D_00295
A21D_00296	SM00917	LeuA allosteric (dimerisation) domain
A21D_00303	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A21D_00329	SM01131	A21D_00329
A21D_00338	SM00382	ATPases associated with a variety of cellular activities
A21D_00339	SM00382	ATPases associated with a variety of cellular activities
A21D_00343	SM00640	Glycosyl hydrolases family 32
A21D_00346	SM00354	helix_turn _helix lactose operon repressor
A21D_00360	SM00382	ATPases associated with a variety of cellular activities
A21D_00365	SM00327	von Willebrand factor (vWF) type A domain
A21D_00369	SM00448	cheY-homologous receiver domain
A21D_00369	SM00862	Transcriptional regulatory protein, C terminal
A21D_00369	SM01043	Bacterial transcriptional activator domain
A21D_00371	SM00342	helix_turn_helix, arabinose operon control protein
A21D_00393	SM01007	Class II Aldolase and Adducin N-terminal domain
A21D_00394	SM01007	Class II Aldolase and Adducin N-terminal domain
A21D_00410	SM00420	helix_turn_helix, Deoxyribose operon repressor
A21D_00410	SM01134	A21D_00410
A21D_00430	SM00836	DALR anticodon binding domain
A21D_00430	SM01016	Arginyl tRNA synthetase N terminal dom
A21D_00439	SM00098	Alkaline phosphatase homologues
A21D_00442	SM00860	SMI1 / KNR4 family
A21D_00448	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00472	SM00382	ATPases associated with a variety of cellular activities
A21D_00473	SM00382	ATPases associated with a variety of cellular activities
A21D_00492	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00492	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_00504	SM00342	helix_turn_helix, arabinose operon control protein
A21D_00510	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00511	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_00514	SM00448	cheY-homologous receiver domain
A21D_00515	SM00091	PAS domain
A21D_00515	SM00387	Histidine kinase-like ATPases
A21D_00524	SM00382	ATPases associated with a variety of cellular activities
A21D_00525	SM00850	LytTr DNA-binding domain
A21D_00531	SM00028	Tetratricopeptide repeats
A21D_00535	SM00984	UDP binding domain
A21D_00536	SM00984	UDP binding domain
A21D_00548	SM00421	helix_turn_helix, Lux Regulon
A21D_00548	SM00448	cheY-homologous receiver domain
A21D_00552	SM00257	Lysin motif
A21D_00555	SM00495	Chitin-binding domain type 3
A21D_00556	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00556	SM00866	A21D_00556
A21D_00573	SM00357	Cold shock protein domain
A21D_00579	SM00822	A21D_00579
A21D_00586	SM00450	Rhodanese Homology Domain
A21D_00586	SM00849	Metallo-beta-lactamase superfamily
A21D_00587	SM00387	Histidine kinase-like ATPases
A21D_00588	SM00421	helix_turn_helix, Lux Regulon
A21D_00588	SM00448	cheY-homologous receiver domain
A21D_00593	SM00450	Rhodanese Homology Domain
A21D_00594	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00597	SM00382	ATPases associated with a variety of cellular activities
A21D_00599	SM00062	Bacterial periplasmic substrate-binding proteins
A21D_00599	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A21D_00601	SM00946	Prolyl-tRNA synthetase, C-terminal
A21D_00604	SM01207	A21D_00604
A21D_00610	SM00062	Bacterial periplasmic substrate-binding proteins
A21D_00613	SM00382	ATPases associated with a variety of cellular activities
A21D_00618	SM00481	DNA polymerase alpha chain like domain
A21D_00630	SM00382	ATPases associated with a variety of cellular activities
A21D_00635	SM00849	Metallo-beta-lactamase superfamily
A21D_00637	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_00640	SM00382	ATPases associated with a variety of cellular activities
A21D_00642	SM00257	Lysin motif
A21D_00642	SM00636	A21D_00642
A21D_00644	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00644	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_00646	SM00382	ATPases associated with a variety of cellular activities
A21D_00649	SM00450	Rhodanese Homology Domain
A21D_00674	SM00382	ATPases associated with a variety of cellular activities
A21D_00675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00678	SM00849	Metallo-beta-lactamase superfamily
A21D_00686	SM00850	LytTr DNA-binding domain
A21D_00709	SM00966	SpoVT / AbrB like domain 
A21D_00711	SM00318	Staphylococcal nuclease homologues
A21D_00713	SM00387	Histidine kinase-like ATPases
A21D_00713	SM00388	His Kinase A (phosphoacceptor) domain
A21D_00714	SM00448	cheY-homologous receiver domain
A21D_00714	SM00862	Transcriptional regulatory protein, C terminal
A21D_00722	SM00382	ATPases associated with a variety of cellular activities
A21D_00729	SM00382	ATPases associated with a variety of cellular activities
A21D_00730	SM00382	ATPases associated with a variety of cellular activities
A21D_00737	SM00422	helix_turn_helix, mercury resistance
A21D_00745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00745	SM00895	A21D_00745
A21D_00759	SM00382	ATPases associated with a variety of cellular activities
A21D_00760	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00763	SM00342	helix_turn_helix, arabinose operon control protein
A21D_00765	SM01038	Beta galactosidase small chain
A21D_00769	SM00567	E-Z type HEAT repeats
A21D_00769	SM00932	Scaffold protein Nfu/NifU N terminal
A21D_00772	SM00420	helix_turn_helix, Deoxyribose operon repressor
A21D_00772	SM01134	A21D_00772
A21D_00774	SM00382	ATPases associated with a variety of cellular activities
A21D_00775	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_00784	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00784	SM00895	A21D_00784
A21D_00787	SM00382	ATPases associated with a variety of cellular activities
A21D_00789	SM00382	ATPases associated with a variety of cellular activities
A21D_00793	SM00387	Histidine kinase-like ATPases
A21D_00793	SM00388	His Kinase A (phosphoacceptor) domain
A21D_00793	SM00448	cheY-homologous receiver domain
A21D_00795	SM00382	ATPases associated with a variety of cellular activities
A21D_00796	SM00382	ATPases associated with a variety of cellular activities
A21D_00817	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_00820	SM00387	Histidine kinase-like ATPases
A21D_00820	SM00388	His Kinase A (phosphoacceptor) domain
A21D_00821	SM00448	cheY-homologous receiver domain
A21D_00821	SM00862	Transcriptional regulatory protein, C terminal
A21D_00824	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_00830	SM00871	Bacterial transcription activator, effector binding domain
A21D_00844	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00844	SM00866	A21D_00844
A21D_00859	SM00382	ATPases associated with a variety of cellular activities
A21D_00873	SM00047	Lysozyme subfamily 2
A21D_00873	SM00287	Bacterial SH3 domain homologues
A21D_00876	SM00382	ATPases associated with a variety of cellular activities
A21D_00878	SM00984	UDP binding domain
A21D_00885	SM01350	A21D_00885
A21D_00889	SM00650	Ribosomal RNA adenine dimethylases
A21D_00890	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_00901	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_00901	SM00866	A21D_00901
A21D_00919	SM00382	ATPases associated with a variety of cellular activities
A21D_00922	SM00382	ATPases associated with a variety of cellular activities
A21D_00930	SM00382	ATPases associated with a variety of cellular activities
A21D_00945	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_00945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_00946	SM00226	Low molecular weight phosphatase family
A21D_00953	SM00937	A21D_00953
A21D_00956	SM00357	Cold shock protein domain
A21D_00956	SM00382	ATPases associated with a variety of cellular activities
A21D_00956	SM00959	Rho termination factor, N-terminal domain
A21D_00961	SM00448	cheY-homologous receiver domain
A21D_00972	SM00836	DALR anticodon binding domain
A21D_00972	SM01016	Arginyl tRNA synthetase N terminal dom
A21D_00983	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_00998	SM01217	A21D_00998
A21D_01002	SM00354	helix_turn _helix lactose operon repressor
A21D_01008	SM00382	ATPases associated with a variety of cellular activities
A21D_01011	SM00382	ATPases associated with a variety of cellular activities
A21D_01012	SM00422	helix_turn_helix, mercury resistance
A21D_01014	SM00382	ATPases associated with a variety of cellular activities
A21D_01015	SM00382	ATPases associated with a variety of cellular activities
A21D_01022	SM00829	Enoylreductase
A21D_01026	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_01029	SM00854	Bacterial capsule synthesis protein PGA_cap
A21D_01036	SM00478	endonuclease III
A21D_01037	SM00342	helix_turn_helix, arabinose operon control protein
A21D_01044	SM00342	helix_turn_helix, arabinose operon control protein
A21D_01045	SM00342	helix_turn_helix, arabinose operon control protein
A21D_01045	SM00871	Bacterial transcription activator, effector binding domain
A21D_01052	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01078	SM00420	helix_turn_helix, Deoxyribose operon repressor
A21D_01078	SM01134	A21D_01078
A21D_01081	SM00382	ATPases associated with a variety of cellular activities
A21D_01083	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_01083	SM00387	Histidine kinase-like ATPases
A21D_01083	SM00388	His Kinase A (phosphoacceptor) domain
A21D_01084	SM00448	cheY-homologous receiver domain
A21D_01084	SM00862	Transcriptional regulatory protein, C terminal
A21D_01092	SM00382	ATPases associated with a variety of cellular activities
A21D_01097	SM00481	DNA polymerase alpha chain like domain
A21D_01110	SM00257	Lysin motif
A21D_01110	SM00646	A21D_01110
A21D_01126	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01131	SM00382	ATPases associated with a variety of cellular activities
A21D_01133	SM00100	Cyclic nucleotide-monophosphate binding domain
A21D_01133	SM00419	helix_turn_helix, cAMP Regulatory protein
A21D_01140	SM00860	SMI1 / KNR4 family
A21D_01155	SM01251	A21D_01155
A21D_01158	SM00646	A21D_01158
A21D_01165	SM00327	von Willebrand factor (vWF) type A domain
A21D_01166	SM00382	ATPases associated with a variety of cellular activities
A21D_01167	SM00829	Enoylreductase
A21D_01168	SM01007	Class II Aldolase and Adducin N-terminal domain
A21D_01172	SM00420	helix_turn_helix, Deoxyribose operon repressor
A21D_01172	SM01134	A21D_01172
A21D_01179	SM00382	ATPases associated with a variety of cellular activities
A21D_01183	SM00354	helix_turn _helix lactose operon repressor
A21D_01185	SM00382	ATPases associated with a variety of cellular activities
A21D_01191	SM00382	ATPases associated with a variety of cellular activities
A21D_01194	SM00725	NEAr Transporter domain
A21D_01195	SM00725	NEAr Transporter domain
A21D_01196	SM00725	NEAr Transporter domain
A21D_01199	SM00382	ATPases associated with a variety of cellular activities
A21D_01201	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_01212	SM00861	Transketolase, pyrimidine binding domain
A21D_01219	SM00422	helix_turn_helix, mercury resistance
A21D_01223	SM00382	ATPases associated with a variety of cellular activities
A21D_01228	SM00382	ATPases associated with a variety of cellular activities
A21D_01229	SM00382	ATPases associated with a variety of cellular activities
A21D_01232	SM00382	ATPases associated with a variety of cellular activities
A21D_01233	SM00382	ATPases associated with a variety of cellular activities
A21D_01234	SM00342	helix_turn_helix, arabinose operon control protein
A21D_01240	SM00382	ATPases associated with a variety of cellular activities
A21D_01241	SM00387	Histidine kinase-like ATPases
A21D_01242	SM00448	cheY-homologous receiver domain
A21D_01242	SM00862	Transcriptional regulatory protein, C terminal
A21D_01264	SM01321	A21D_01264
A21D_01269	SM00382	ATPases associated with a variety of cellular activities
A21D_01270	SM00382	ATPases associated with a variety of cellular activities
A21D_01272	SM00662	RNA polymerases D
A21D_01276	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_01288	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A21D_01289	SM01374	A21D_01289
A21D_01293	SM00322	K homology RNA-binding domain
A21D_01296	SM01382	A21D_01296
A21D_01296	SM01383	A21D_01296
A21D_01300	SM01403	A21D_01300
A21D_01302	SM00838	Elongation factor G C-terminus
A21D_01302	SM00889	Elongation factor G, domain IV
A21D_01306	SM00663	RNA polymerase I subunit A N-terminus
A21D_01312	SM00649	Ribosomal protein L11/L12
A21D_01313	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A21D_01313	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A21D_01316	SM00421	helix_turn_helix, Lux Regulon
A21D_01318	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A21D_01319	SM00535	Ribonuclease III family
A21D_01320	SM00840	A21D_01320
A21D_01324	SM00670	Large family of predicted nucleotide-binding domains
A21D_01325	SM00382	ATPases associated with a variety of cellular activities
A21D_01327	SM00382	ATPases associated with a variety of cellular activities
A21D_01327	SM01086	C-terminal, D2-small domain, of ClpB protein
A21D_01350	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01352	SM00905	Dihydroneopterin aldolase
A21D_01358	SM00382	ATPases associated with a variety of cellular activities
A21D_01360	SM00977	TilS substrate C-terminal domain
A21D_01361	SM00220	Serine/Threonine protein kinases, catalytic domain
A21D_01363	SM00331	Sigma factor PP2C-like phosphatases
A21D_01363	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A21D_01365	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_01369	SM00363	S4 RNA-binding domain
A21D_01372	SM00966	SpoVT / AbrB like domain 
A21D_01373	SM00487	DEAD-like helicases superfamily
A21D_01373	SM00490	helicase superfamily c-terminal domain
A21D_01373	SM00982	A21D_01373
A21D_01373	SM01058	CarD-like/TRCF domain
A21D_01377	SM01400	A21D_01377
A21D_01385	SM00650	Ribosomal RNA adenine dimethylases
A21D_01386	SM00493	A21D_01386
A21D_01387	SM01208	A21D_01387
A21D_01390	SM00966	SpoVT / AbrB like domain 
A21D_01392	SM00465	GIY-YIG type nucleases (URI domain)
A21D_01404	SM00493	A21D_01404
A21D_01406	SM00382	ATPases associated with a variety of cellular activities
A21D_01407	SM00947	Carbonic anhydrase
A21D_01410	SM00257	Lysin motif
A21D_01410	SM00636	A21D_01410
A21D_01421	SM00752	Horizontally Transferred TransMembrane Domain
A21D_01423	SM00460	Transglutaminase/protease-like homologues
A21D_01425	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_01425	SM00876	Biotin and Thiamin Synthesis associated domain
A21D_01426	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_01431	SM00382	ATPases associated with a variety of cellular activities
A21D_01432	SM00382	ATPases associated with a variety of cellular activities
A21D_01436	SM00448	cheY-homologous receiver domain
A21D_01436	SM00862	Transcriptional regulatory protein, C terminal
A21D_01437	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_01437	SM00387	Histidine kinase-like ATPases
A21D_01437	SM00388	His Kinase A (phosphoacceptor) domain
A21D_01440	SM00646	A21D_01440
A21D_01442	SM00849	Metallo-beta-lactamase superfamily
A21D_01457	SM00382	ATPases associated with a variety of cellular activities
A21D_01457	SM00930	A21D_01457
A21D_01461	SM00936	Penicillin-binding protein 5, C-terminal domain 
A21D_01462	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_01462	SM01240	A21D_01462
A21D_01464	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_01465	SM00434	DNA Topoisomerase IV
A21D_01466	SM00387	Histidine kinase-like ATPases
A21D_01466	SM00433	TopoisomeraseII
A21D_01470	SM00480	DNA polymerase III beta subunit
A21D_01471	SM00382	ATPases associated with a variety of cellular activities
A21D_01471	SM00760	Bacterial dnaA protein helix-turn-helix domain
A21D_01475	SM00393	Putative single-stranded nucleic acids-binding domain
A21D_01475	SM01245	A21D_01475
A21D_01477	SM01228	A21D_01477
A21D_01479	SM00470	ParB-like nuclease domain
A21D_01481	SM00470	ParB-like nuclease domain
A21D_01496	SM00267	diguanylate cyclase
A21D_01499	SM00788	Adenylosuccinate synthetase
A21D_01501	SM00448	cheY-homologous receiver domain
A21D_01501	SM00862	Transcriptional regulatory protein, C terminal
A21D_01502	SM00091	PAS domain
A21D_01502	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_01502	SM00387	Histidine kinase-like ATPases
A21D_01502	SM00388	His Kinase A (phosphoacceptor) domain
A21D_01505	SM00849	Metallo-beta-lactamase superfamily
A21D_01506	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_01508	SM00382	ATPases associated with a variety of cellular activities
A21D_01510	SM00450	Rhodanese Homology Domain
A21D_01510	SM00849	Metallo-beta-lactamase superfamily
A21D_01530	SM00382	ATPases associated with a variety of cellular activities
A21D_01537	SM01240	A21D_01537
A21D_01538	SM00028	Tetratricopeptide repeats
A21D_01538	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01561	SM00487	DEAD-like helicases superfamily
A21D_01561	SM00490	helicase superfamily c-terminal domain
A21D_01566	SM00899	A21D_01566
A21D_01580	SM00448	cheY-homologous receiver domain
A21D_01580	SM00862	Transcriptional regulatory protein, C terminal
A21D_01582	SM01260	A21D_01582
A21D_01585	SM01260	A21D_01585
A21D_01586	SM00382	ATPases associated with a variety of cellular activities
A21D_01588	SM00382	ATPases associated with a variety of cellular activities
A21D_01591	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_01594	SM00850	LytTr DNA-binding domain
A21D_01613	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01614	SM00419	helix_turn_helix, cAMP Regulatory protein
A21D_01615	SM00836	DALR anticodon binding domain
A21D_01615	SM01016	Arginyl tRNA synthetase N terminal dom
A21D_01621	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_01621	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_01627	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_01627	SM00382	ATPases associated with a variety of cellular activities
A21D_01659	SM01266	A21D_01659
A21D_01661	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_01661	SM00866	A21D_01661
A21D_01669	SM00448	cheY-homologous receiver domain
A21D_01670	SM00091	PAS domain
A21D_01670	SM00387	Histidine kinase-like ATPases
A21D_01671	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_01671	SM00866	A21D_01671
A21D_01676	SM00382	ATPases associated with a variety of cellular activities
A21D_01678	SM00382	ATPases associated with a variety of cellular activities
A21D_01679	SM00481	DNA polymerase alpha chain like domain
A21D_01681	SM00382	ATPases associated with a variety of cellular activities
A21D_01685	SM00763	PrkA AAA domain
A21D_01690	SM00382	ATPases associated with a variety of cellular activities
A21D_01697	SM01091	Transporter associated domain
A21D_01699	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_01701	SM00226	Low molecular weight phosphatase family
A21D_01702	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_01702	SM00387	Histidine kinase-like ATPases
A21D_01702	SM00388	His Kinase A (phosphoacceptor) domain
A21D_01703	SM00448	cheY-homologous receiver domain
A21D_01703	SM00862	Transcriptional regulatory protein, C terminal
A21D_01713	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_01713	SM00866	A21D_01713
A21D_01717	SM01061	CAT RNA binding domain
A21D_01720	SM00382	ATPases associated with a variety of cellular activities
A21D_01723	SM00382	ATPases associated with a variety of cellular activities
A21D_01727	SM00354	helix_turn _helix lactose operon repressor
A21D_01735	SM00382	ATPases associated with a variety of cellular activities
A21D_01748	SM00829	Enoylreductase
A21D_01749	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_01750	SM00382	ATPases associated with a variety of cellular activities
A21D_01754	SM00478	endonuclease III
A21D_01755	SM00984	UDP binding domain
A21D_01763	SM00938	Nitrogen regulatory protein P-II
A21D_01772	SM00850	LytTr DNA-binding domain
A21D_01786	SM01060	A21D_01786
A21D_01795	SM00382	ATPases associated with a variety of cellular activities
A21D_01798	SM00422	helix_turn_helix, mercury resistance
A21D_01799	SM00287	Bacterial SH3 domain homologues
A21D_01799	SM00646	A21D_01799
A21D_01804	SM00382	ATPases associated with a variety of cellular activities
A21D_01805	SM00382	ATPases associated with a variety of cellular activities
A21D_01806	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_01813	SM01350	A21D_01813
A21D_01820	SM00382	ATPases associated with a variety of cellular activities
A21D_01821	SM00487	DEAD-like helicases superfamily
A21D_01821	SM00490	helicase superfamily c-terminal domain
A21D_01837	SM00257	Lysin motif
A21D_01838	SM00382	ATPases associated with a variety of cellular activities
A21D_01840	SM00387	Histidine kinase-like ATPases
A21D_01841	SM00421	helix_turn_helix, Lux Regulon
A21D_01841	SM00448	cheY-homologous receiver domain
A21D_01845	SM00382	ATPases associated with a variety of cellular activities
A21D_01851	SM00155	Phospholipase D. Active site motifs.
A21D_01857	SM00341	Helicase and RNase D C-terminal
A21D_01857	SM00487	DEAD-like helicases superfamily
A21D_01857	SM00490	helicase superfamily c-terminal domain
A21D_01857	SM00956	A21D_01857
A21D_01872	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
A21D_01877	SM00822	A21D_01877
A21D_01879	SM00882	Coenzyme A transferase
A21D_01884	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_01887	SM00852	Probable molybdopterin binding domain
A21D_01900	SM00422	helix_turn_helix, mercury resistance
A21D_01904	SM00422	helix_turn_helix, mercury resistance
A21D_01915	SM00872	Alpha mannosidase, middle domain
A21D_01918	SM00014	Acid phosphatase homologues
A21D_01919	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01922	SM00248	ankyrin repeats
A21D_01947	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_01947	SM01091	Transporter associated domain
A21D_01948	SM00831	Cation transporter/ATPase, N-terminus
A21D_01949	SM00849	Metallo-beta-lactamase superfamily
A21D_01957	SM00642	Alpha-amylase domain
A21D_01958	SM00354	helix_turn _helix lactose operon repressor
A21D_01961	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A21D_01970	SM00382	ATPases associated with a variety of cellular activities
A21D_01974	SM00448	cheY-homologous receiver domain
A21D_01985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_01988	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A21D_01990	SM00382	ATPases associated with a variety of cellular activities
A21D_01997	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_01998	SM00838	Elongation factor G C-terminus
A21D_02002	SM00382	ATPases associated with a variety of cellular activities
A21D_02005	SM00854	Bacterial capsule synthesis protein PGA_cap
A21D_02010	SM00448	cheY-homologous receiver domain
A21D_02010	SM00862	Transcriptional regulatory protein, C terminal
A21D_02011	SM00387	Histidine kinase-like ATPases
A21D_02011	SM00388	His Kinase A (phosphoacceptor) domain
A21D_02018	SM00382	ATPases associated with a variety of cellular activities
A21D_02019	SM00062	Bacterial periplasmic substrate-binding proteins
A21D_02020	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A21D_02021	SM00382	ATPases associated with a variety of cellular activities
A21D_02023	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_02029	SM00487	DEAD-like helicases superfamily
A21D_02029	SM00490	helicase superfamily c-terminal domain
A21D_02038	SM01005	Alanine racemase, C-terminal domain
A21D_02043	SM00387	Histidine kinase-like ATPases
A21D_02044	SM00331	Sigma factor PP2C-like phosphatases
A21D_02044	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A21D_02048	SM00331	Sigma factor PP2C-like phosphatases
A21D_02049	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_02049	SM00732	Likely ribonuclease with RNase H fold.
A21D_02050	SM01060	A21D_02050
A21D_02051	SM00731	SprT homologues.
A21D_02075	SM00382	ATPases associated with a variety of cellular activities
A21D_02076	SM00881	CoA binding domain
A21D_02079	SM00883	Chaperonin 10 Kd subunit
A21D_02087	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02088	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02091	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02131	SM00257	Lysin motif
A21D_02141	SM00644	A21D_02141
A21D_02147	SM00382	ATPases associated with a variety of cellular activities
A21D_02166	SM00382	ATPases associated with a variety of cellular activities
A21D_02167	SM00382	ATPases associated with a variety of cellular activities
A21D_02172	SM00354	helix_turn _helix lactose operon repressor
A21D_02175	SM00382	ATPases associated with a variety of cellular activities
A21D_02182	SM00986	Uracil DNA glycosylase superfamily
A21D_02182	SM00987	UreE urease accessory protein, C-terminal domain 
A21D_02188	SM01061	CAT RNA binding domain
A21D_02192	SM00421	helix_turn_helix, Lux Regulon
A21D_02197	SM00052	Putative diguanylate phosphodiesterase
A21D_02199	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_02203	SM00382	ATPases associated with a variety of cellular activities
A21D_02204	SM00382	ATPases associated with a variety of cellular activities
A21D_02214	SM00460	Transglutaminase/protease-like homologues
A21D_02217	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_02220	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_02226	SM01001	AIR carboxylase
A21D_02228	SM00998	Adenylosuccinate lyase C-terminus
A21D_02231	SM01211	A21D_02231
A21D_02236	SM00798	AICARFT/IMPCHase bienzyme
A21D_02236	SM00851	MGS-like domain
A21D_02237	SM01209	A21D_02237
A21D_02237	SM01210	A21D_02237
A21D_02243	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A21D_02243	SM00292	breast cancer carboxy-terminal domain
A21D_02243	SM00532	Ligase N family
A21D_02245	SM00028	Tetratricopeptide repeats
A21D_02245	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02251	SM00845	GatB domain
A21D_02252	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A21D_02266	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02286	SM00506	Appr-1"-p processing enzyme
A21D_02288	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_02288	SM00895	A21D_02288
A21D_02295	SM00382	ATPases associated with a variety of cellular activities
A21D_02311	SM00450	Rhodanese Homology Domain
A21D_02314	SM00450	Rhodanese Homology Domain
A21D_02315	SM00450	Rhodanese Homology Domain
A21D_02319	SM00947	Carbonic anhydrase
A21D_02320	SM00450	Rhodanese Homology Domain
A21D_02320	SM00849	Metallo-beta-lactamase superfamily
A21D_02321	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_02327	SM00382	ATPases associated with a variety of cellular activities
A21D_02344	SM00346	helix_turn_helix isocitrate lyase regulation
A21D_02351	SM00563	Phosphate acyltransferases
A21D_02353	SM00226	Low molecular weight phosphatase family
A21D_02357	SM00062	Bacterial periplasmic substrate-binding proteins
A21D_02367	SM00382	ATPases associated with a variety of cellular activities
A21D_02367	SM01086	C-terminal, D2-small domain, of ClpB protein
A21D_02368	SM00849	Metallo-beta-lactamase superfamily
A21D_02369	SM00244	prohibitin homologues
A21D_02371	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_02372	SM00382	ATPases associated with a variety of cellular activities
A21D_02375	SM00382	ATPases associated with a variety of cellular activities
A21D_02378	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_02379	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02385	SM00478	endonuclease III
A21D_02385	SM00525	A21D_02385
A21D_02389	SM00382	ATPases associated with a variety of cellular activities
A21D_02393	SM00382	ATPases associated with a variety of cellular activities
A21D_02394	SM00387	Histidine kinase-like ATPases
A21D_02395	SM00448	cheY-homologous receiver domain
A21D_02395	SM00862	Transcriptional regulatory protein, C terminal
A21D_02420	SM01321	A21D_02420
A21D_02423	SM01207	A21D_02423
A21D_02429	SM00825	Beta-ketoacyl synthase
A21D_02430	SM00822	A21D_02430
A21D_02430	SM00825	Beta-ketoacyl synthase
A21D_02431	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A21D_02433	SM00823	Phosphopantetheine attachment site
A21D_02439	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_02462	SM00899	A21D_02462
A21D_02465	SM00387	Histidine kinase-like ATPases
A21D_02465	SM00388	His Kinase A (phosphoacceptor) domain
A21D_02466	SM00448	cheY-homologous receiver domain
A21D_02466	SM00862	Transcriptional regulatory protein, C terminal
A21D_02470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_02470	SM00866	A21D_02470
A21D_02478	SM00822	A21D_02478
A21D_02492	SM00829	Enoylreductase
A21D_02493	SM01130	A21D_02493
A21D_02499	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A21D_02510	SM00849	Metallo-beta-lactamase superfamily
A21D_02514	SM00382	ATPases associated with a variety of cellular activities
A21D_02515	SM00382	ATPases associated with a variety of cellular activities
A21D_02522	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A21D_02525	SM01061	CAT RNA binding domain
A21D_02544	SM00382	ATPases associated with a variety of cellular activities
A21D_02553	SM00479	A21D_02553
A21D_02555	SM00342	helix_turn_helix, arabinose operon control protein
A21D_02568	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A21D_02572	SM00091	PAS domain
A21D_02572	SM00382	ATPases associated with a variety of cellular activities
A21D_02585	SM00642	Alpha-amylase domain
A21D_02586	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02587	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02596	SM00829	Enoylreductase
A21D_02597	SM00986	Uracil DNA glycosylase superfamily
A21D_02597	SM00987	UreE urease accessory protein, C-terminal domain 
A21D_02600	SM00421	helix_turn_helix, Lux Regulon
A21D_02600	SM00448	cheY-homologous receiver domain
A21D_02601	SM00382	ATPases associated with a variety of cellular activities
A21D_02607	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A21D_02608	SM00851	MGS-like domain
A21D_02608	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A21D_02617	SM00861	Transketolase, pyrimidine binding domain
A21D_02624	SM00382	ATPases associated with a variety of cellular activities
A21D_02625	SM00382	ATPases associated with a variety of cellular activities
A21D_02645	SM00914	A21D_02645
A21D_02648	SM00422	helix_turn_helix, mercury resistance
A21D_02653	SM00382	ATPases associated with a variety of cellular activities
A21D_02658	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02660	SM00382	ATPases associated with a variety of cellular activities
A21D_02672	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_02672	SM00382	ATPases associated with a variety of cellular activities
A21D_02679	SM00354	helix_turn _helix lactose operon repressor
A21D_02683	SM00382	ATPases associated with a variety of cellular activities
A21D_02687	SM00014	Acid phosphatase homologues
A21D_02690	SM00387	Histidine kinase-like ATPases
A21D_02691	SM00421	helix_turn_helix, Lux Regulon
A21D_02691	SM00448	cheY-homologous receiver domain
A21D_02722	SM00642	Alpha-amylase domain
A21D_02726	SM00932	Scaffold protein Nfu/NifU N terminal
A21D_02738	SM00825	Beta-ketoacyl synthase
A21D_02742	SM00450	Rhodanese Homology Domain
A21D_02755	SM01118	A21D_02755
A21D_02756	SM00954	Region found in RelA / SpoT proteins
A21D_02760	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_02760	SM00924	MgtE intracellular N domain
A21D_02770	SM00382	ATPases associated with a variety of cellular activities
A21D_02771	SM00382	ATPases associated with a variety of cellular activities
A21D_02776	SM00448	cheY-homologous receiver domain
A21D_02777	SM00387	Histidine kinase-like ATPases
A21D_02781	SM00857	Resolvase, N terminal domain
A21D_02788	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02806	SM00387	Histidine kinase-like ATPases
A21D_02806	SM00388	His Kinase A (phosphoacceptor) domain
A21D_02806	SM00448	cheY-homologous receiver domain
A21D_02807	SM00448	cheY-homologous receiver domain
A21D_02807	SM00862	Transcriptional regulatory protein, C terminal
A21D_02807	SM01043	Bacterial transcriptional activator domain
A21D_02809	SM00421	helix_turn_helix, Lux Regulon
A21D_02851	SM01298	A21D_02851
A21D_02857	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_02874	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_02882	SM00382	ATPases associated with a variety of cellular activities
A21D_02894	SM00450	Rhodanese Homology Domain
A21D_02902	SM00363	S4 RNA-binding domain
A21D_02908	SM00849	Metallo-beta-lactamase superfamily
A21D_02916	SM00382	ATPases associated with a variety of cellular activities
A21D_02916	SM00843	A21D_02916
A21D_02922	SM00842	Cell division protein FtsA
A21D_02923	SM00830	Chorismate mutase type II
A21D_02924	SM00354	helix_turn _helix lactose operon repressor
A21D_02928	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_02932	SM00363	S4 RNA-binding domain
A21D_02932	SM01390	A21D_02932
A21D_02933	SM00267	diguanylate cyclase
A21D_02934	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A21D_02938	SM00981	A21D_02938
A21D_02948	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A21D_02948	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A21D_02950	SM00849	Metallo-beta-lactamase superfamily
A21D_02953	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_02960	SM00481	DNA polymerase alpha chain like domain
A21D_02961	SM00919	Malic enzyme, NAD binding domain
A21D_02961	SM01274	A21D_02961
A21D_02962	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_02970	SM01329	A21D_02970
A21D_02973	SM00448	cheY-homologous receiver domain
A21D_02973	SM00862	Transcriptional regulatory protein, C terminal
A21D_02974	SM00091	PAS domain
A21D_02974	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_02974	SM00387	Histidine kinase-like ATPases
A21D_02974	SM00388	His Kinase A (phosphoacceptor) domain
A21D_02975	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A21D_02975	SM00474	3'-5' exonuclease
A21D_02975	SM00475	5'-3' exonuclease
A21D_02975	SM00482	DNA polymerase A domain
A21D_02976	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A21D_02976	SM01232	A21D_02976
A21D_02978	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A21D_02983	SM00382	ATPases associated with a variety of cellular activities
A21D_02985	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A21D_02996	SM00382	ATPases associated with a variety of cellular activities
A21D_03001	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A21D_03003	SM00873	B3/4 domain
A21D_03003	SM00874	tRNA synthetase B5 domain
A21D_03003	SM00896	Ferredoxin-fold anticodon binding domain
A21D_03007	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A21D_03007	SM00481	DNA polymerase alpha chain like domain
A21D_03007	SM00483	DNA polymerase X family
A21D_03008	SM00463	Small MutS-related domain
A21D_03008	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A21D_03008	SM00534	ATPase domain of DNA mismatch repair MUTS family
A21D_03013	SM00893	Electron transfer flavoprotein domain
A21D_03014	SM00893	Electron transfer flavoprotein domain
A21D_03016	SM00465	GIY-YIG type nucleases (URI domain)
A21D_03022	SM00421	helix_turn_helix, Lux Regulon
A21D_03027	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_03031	SM00829	Enoylreductase
A21D_03033	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_03034	SM00382	ATPases associated with a variety of cellular activities
A21D_03039	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_03044	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A21D_03047	SM00100	Cyclic nucleotide-monophosphate binding domain
A21D_03047	SM00419	helix_turn_helix, cAMP Regulatory protein
A21D_03049	SM00852	Probable molybdopterin binding domain
A21D_03054	SM01059	Chloramphenicol acetyltransferase
A21D_03060	SM00347	helix_turn_helix multiple antibiotic resistance protein
A21D_03062	SM00909	Sporulation and spore germination
A21D_03071	SM00382	ATPases associated with a variety of cellular activities
A21D_03071	SM00994	ClpX C4-type zinc finger
A21D_03071	SM01086	C-terminal, D2-small domain, of ClpB protein
A21D_03072	SM00382	ATPases associated with a variety of cellular activities
A21D_03072	SM00464	Found in ATP-dependent protease La (LON)
A21D_03079	SM01004	Delta-aminolevulinic acid dehydratase
A21D_03102	SM00257	Lysin motif
A21D_03106	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A21D_03107	SM00382	ATPases associated with a variety of cellular activities
A21D_03111	SM01323	A21D_03111
A21D_03120	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_03120	SM00954	Region found in RelA / SpoT proteins
A21D_03122	SM00287	Bacterial SH3 domain homologues
A21D_03122	SM00646	A21D_03122
A21D_03127	SM00382	ATPases associated with a variety of cellular activities
A21D_03131	SM00028	Tetratricopeptide repeats
A21D_03135	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A21D_03137	SM00732	Likely ribonuclease with RNase H fold.
A21D_03162	SM01103	A21D_03162
A21D_03164	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_03167	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A21D_03169	SM00849	Metallo-beta-lactamase superfamily
A21D_03176	SM00838	Elongation factor G C-terminus
A21D_03177	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_03181	SM00271	DnaJ molecular chaperone homology domain
A21D_03184	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_03185	SM01133	A21D_03185
A21D_03194	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_03202	SM00116	Domain in cystathionine beta-synthase and other proteins.
A21D_03204	SM00400	zinc finger
A21D_03204	SM00493	A21D_03204
A21D_03209	SM00487	DEAD-like helicases superfamily
A21D_03209	SM00490	helicase superfamily c-terminal domain
A21D_03210	SM00518	AP endonuclease family 2
A21D_03231	SM00028	Tetratricopeptide repeats
A21D_03240	SM00849	Metallo-beta-lactamase superfamily
A21D_03248	SM00382	ATPases associated with a variety of cellular activities
A21D_03251	SM00487	DEAD-like helicases superfamily
A21D_03251	SM00490	helicase superfamily c-terminal domain
A21D_03255	SM00450	Rhodanese Homology Domain
A21D_03256	SM00529	Helix-turn-helix diphteria tox regulatory element
A21D_03261	SM00841	Elongation factor P, C-terminal
A21D_03261	SM01185	A21D_03261
A21D_03262	SM00382	ATPases associated with a variety of cellular activities
A21D_03271	SM00878	Biotin carboxylase C-terminal domain
A21D_03279	SM00363	S4 RNA-binding domain
A21D_03282	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_03283	SM00448	cheY-homologous receiver domain
A21D_03286	SM00091	PAS domain
A21D_03286	SM00382	ATPases associated with a variety of cellular activities
A21D_03288	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A21D_03292	SM00861	Transketolase, pyrimidine binding domain
A21D_03305	SM00849	Metallo-beta-lactamase superfamily
A21D_03317	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A21D_03318	SM00936	Penicillin-binding protein 5, C-terminal domain 
A21D_03320	SM00387	Histidine kinase-like ATPases
A21D_03336	SM00363	S4 RNA-binding domain
A21D_03340	SM00448	cheY-homologous receiver domain
A21D_03340	SM00862	Transcriptional regulatory protein, C terminal
A21D_03341	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A21D_03341	SM00387	Histidine kinase-like ATPases
A21D_03341	SM00388	His Kinase A (phosphoacceptor) domain
A21D_03346	SM00487	DEAD-like helicases superfamily
A21D_03346	SM00490	helicase superfamily c-terminal domain
A21D_03350	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A21D_03352	SM00870	A21D_03352
A21D_03358	SM00563	Phosphate acyltransferases
A21D_03359	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_03368	SM00411	bacterial (prokaryotic) histone like domain
A21D_03373	SM00562	A21D_03373
A21D_03374	SM00138	Methyltransferase, chemotaxis proteins 
A21D_03381	SM00028	Tetratricopeptide repeats
A21D_03382	SM00914	A21D_03382
A21D_03395	SM00851	MGS-like domain
A21D_03399	SM00479	A21D_03399
A21D_03399	SM00491	A21D_03399
A21D_03405	SM00478	endonuclease III
A21D_03405	SM00525	A21D_03405
A21D_03406	SM00060	Fibronectin type 3 domain
A21D_03414	SM00981	A21D_03414
A21D_03420	SM00357	Cold shock protein domain
A21D_03422	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_03441	SM00028	Tetratricopeptide repeats
A21D_03441	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_03452	SM00382	ATPases associated with a variety of cellular activities
A21D_03453	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A21D_03453	SM00475	5'-3' exonuclease
A21D_03455	SM00849	Metallo-beta-lactamase superfamily
A21D_03459	SM00878	Biotin carboxylase C-terminal domain
A21D_03464	SM00434	DNA Topoisomerase IV
A21D_03465	SM00387	Histidine kinase-like ATPases
A21D_03465	SM00433	TopoisomeraseII
A21D_03466	SM00881	CoA binding domain
A21D_03468	SM00382	ATPases associated with a variety of cellular activities
A21D_03469	SM01207	A21D_03469
A21D_03471	SM01234	A21D_03471
A21D_03478	SM00091	PAS domain
A21D_03478	SM00387	Histidine kinase-like ATPases
A21D_03478	SM00388	His Kinase A (phosphoacceptor) domain
A21D_03481	SM00448	cheY-homologous receiver domain
A21D_03487	SM00861	Transketolase, pyrimidine binding domain
A21D_03493	SM00422	helix_turn_helix, mercury resistance
A21D_03502	SM00646	A21D_03502
A21D_03503	SM00646	A21D_03503
A21D_03525	SM00507	HNH nucleases
A21D_03542	SM00487	DEAD-like helicases superfamily
A21D_03542	SM00490	helicase superfamily c-terminal domain
A21D_03543	SM00990	A21D_03543
A21D_03554	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_03555	SM00857	Resolvase, N terminal domain
A21D_03560	SM01230	A21D_03560
A21D_03561	SM00422	helix_turn_helix, mercury resistance
A21D_03564	SM00382	ATPases associated with a variety of cellular activities
A21D_03568	SM00853	MutL C terminal dimerisation domain
A21D_03568	SM01340	A21D_03568
A21D_03569	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A21D_03569	SM00534	ATPase domain of DNA mismatch repair MUTS family
A21D_03572	SM00729	Elongator protein 3, MiaB family, Radical SAM
A21D_03575	SM00322	K homology RNA-binding domain
A21D_03575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A21D_03576	SM00382	ATPases associated with a variety of cellular activities
A21D_03577	SM00852	Probable molybdopterin binding domain
A21D_03579	SM00530	Helix-turn-helix XRE-family like proteins 
A21D_03587	SM00382	ATPases associated with a variety of cellular activities
A21D_03589	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A21D_03589	SM00866	A21D_03589
A21D_03590	SM00382	ATPases associated with a variety of cellular activities
A21D_03590	SM00843	A21D_03590
A21D_03593	SM01130	A21D_03593
A21D_03595	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A21D_03601	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_03601	SM00322	K homology RNA-binding domain
A21D_03602	SM01387	A21D_03602
A21D_03603	SM00904	Riboflavin kinase
A21D_03610	SM00316	Ribosomal protein S1-like RNA-binding domain
A21D_03610	SM00322	K homology RNA-binding domain
A21D_03612	SM00479	A21D_03612
A21D_03612	SM00481	DNA polymerase alpha chain like domain
A21D_03613	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_03627	SM00260	Two component signalling adaptor domain
A21D_03628	SM00073	Histidine Phosphotransfer domain
A21D_03628	SM00260	Two component signalling adaptor domain
A21D_03628	SM00387	Histidine kinase-like ATPases
A21D_03628	SM01231	A21D_03628
A21D_03629	SM00448	cheY-homologous receiver domain
A21D_03631	SM00382	ATPases associated with a variety of cellular activities
A21D_03631	SM00962	SRP54-type protein, GTPase domain
A21D_03638	SM00448	cheY-homologous receiver domain
A21D_03648	SM00382	ATPases associated with a variety of cellular activities
A21D_03656	SM00382	ATPases associated with a variety of cellular activities
A21D_03656	SM01086	C-terminal, D2-small domain, of ClpB protein
A21D_03659	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A21D_03659	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A21D_03659	SM00493	A21D_03659
A21D_03661	SM00881	CoA binding domain
A21D_03674	SM00382	ATPases associated with a variety of cellular activities
A21D_03674	SM00962	SRP54-type protein, GTPase domain
A21D_03674	SM00963	SRP54-type protein, helical bundle domain
A21D_03677	SM00382	ATPases associated with a variety of cellular activities
A21D_03677	SM00962	SRP54-type protein, GTPase domain
A21D_03677	SM00963	SRP54-type protein, helical bundle domain
A21D_03678	SM00968	SMC proteins Flexible Hinge Domain
A21D_03680	SM00358	Double-stranded RNA binding motif
A21D_03680	SM00535	Ribonuclease III family
A21D_03682	SM00822	A21D_03682
A21D_03683	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A21D_03686	SM00487	DEAD-like helicases superfamily
A21D_03686	SM00490	helicase superfamily c-terminal domain
A21D_03690	SM01120	A21D_03690
A21D_03690	SM01121	A21D_03690
A21D_03693	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A21D_03696	SM00220	Serine/Threonine protein kinases, catalytic domain
A21D_03696	SM00740	A21D_03696
A21D_03697	SM00331	Sigma factor PP2C-like phosphatases
A21D_03697	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A21D_03700	SM00487	DEAD-like helicases superfamily
A21D_03700	SM00490	helicase superfamily c-terminal domain
A21D_03702	SM01409	A21D_03702
A21D_03703	SM00072	Guanylate kinase homologues.
A21D_03706	SM00831	Cation transporter/ATPase, N-terminus
A21D_03713	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A21D_03716	SM00851	MGS-like domain
A21D_03716	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A21D_03717	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A21D_03721	SM00363	S4 RNA-binding domain
A21D_03725	SM00363	S4 RNA-binding domain
A21D_03734	SM00864	Tubulin/FtsZ family, GTPase domain
A21D_03734	SM00865	Tubulin/FtsZ family, C-terminal domain
A21D_03735	SM00842	Cell division protein FtsA
A21D_03742	SM00740	A21D_03742
A21D_03743	SM00740	A21D_03743
A21D_03754	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A21D_03773	SM00878	Biotin carboxylase C-terminal domain
A21D_03793	SM00861	Transketolase, pyrimidine binding domain
A21D_03799	SM00849	Metallo-beta-lactamase superfamily
A21D_03801	SM00382	ATPases associated with a variety of cellular activities
A21D_03802	SM00382	ATPases associated with a variety of cellular activities
A21D_03809	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A21D_03824	SM00052	Putative diguanylate phosphodiesterase
A21D_03824	SM00267	diguanylate cyclase
A21D_03838	SM00829	Enoylreductase
A21D_03845	SM00867	YceI-like domain 
A21D_03864	SM00450	Rhodanese Homology Domain
A21D_03866	SM00829	Enoylreductase
A21D_03868	SM00834	Putative regulatory protein
A21D_03893	SM00382	ATPases associated with a variety of cellular activities
A21D_03896	SM00244	prohibitin homologues
A21D_03898	SM00862	Transcriptional regulatory protein, C terminal
A21D_03901	SM00420	helix_turn_helix, Deoxyribose operon repressor
A21D_03914	SM00342	helix_turn_helix, arabinose operon control protein
A21D_03929	SM00382	ATPases associated with a variety of cellular activities
A21D_03933	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A21D_03933	SM00091	PAS domain
A21D_03942	SM01130	A21D_03942
A21D_03945	SM00903	Flavin reductase like domain
A21D_03949	SM00563	Phosphate acyltransferases
A21D_03951	SM00861	Transketolase, pyrimidine binding domain
A21D_03958	SM01207	A21D_03958
A21D_03965	SM00387	Histidine kinase-like ATPases
A21D_03965	SM00388	His Kinase A (phosphoacceptor) domain
A21D_03966	SM00448	cheY-homologous receiver domain
A21D_03966	SM00862	Transcriptional regulatory protein, C terminal
A21D_03972	SM00861	Transketolase, pyrimidine binding domain
A21D_03974	SM00382	ATPases associated with a variety of cellular activities
A21D_03987	SM00644	A21D_03987
A21D_03987	SM01095	Cpl-7 lysozyme C-terminal domain
