locus-tag class description LVJ82_00030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_00030 PF03466 LysR substrate binding domain LVJ82_00045 PF07497 Rho termination factor, RNA-binding domain LVJ82_00045 PF07498 Rho termination factor, N-terminal domain LVJ82_00045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LVJ82_00055 PF00085 Thioredoxin LVJ82_00060 PF00005 ABC transporter LVJ82_00060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LVJ82_00070 PF07690 Major Facilitator Superfamily LVJ82_00075 PF08803 Putative mono-oxygenase ydhR LVJ82_00100 PF10043 Predicted periplasmic lipoprotein (DUF2279) LVJ82_00105 PF00271 Helicase conserved C-terminal domain LVJ82_00105 PF02559 CarD-like/TRCF domain LVJ82_00105 PF00270 DEAD/DEAH box helicase LVJ82_00105 PF17757 UvrB interaction domain LVJ82_00105 PF03461 TRCF domain LVJ82_00115 PF00561 alpha/beta hydrolase fold LVJ82_00115 PF07021 Methionine biosynthesis protein MetW LVJ82_00120 PF00561 alpha/beta hydrolase fold LVJ82_00130 PF00535 Glycosyl transferase family 2 LVJ82_00135 PF04247 Invasion gene expression up-regulator, SirB LVJ82_00140 PF00330 Aconitase family (aconitate hydratase) LVJ82_00145 PF08085 Entericidin EcnA/B family LVJ82_00150 PF00694 Aconitase C-terminal domain LVJ82_00155 PF00180 Isocitrate/isopropylmalate dehydrogenase LVJ82_00160 PF04403 Paraquat-inducible protein A LVJ82_00185 PF13673 Acetyltransferase (GNAT) domain LVJ82_00190 PF16916 Dimerisation domain of Zinc Transporter LVJ82_00190 PF01545 Cation efflux family LVJ82_00195 PF00892 EamA-like transporter family LVJ82_00230 PF00490 Delta-aminolevulinic acid dehydratase LVJ82_00255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_00255 PF03466 LysR substrate binding domain LVJ82_00265 PF00266 Aminotransferase class-V LVJ82_00270 PF17384 RimP C-terminal SH3 domain LVJ82_00270 PF02576 RimP N-terminal domain LVJ82_00275 PF13184 NusA-like KH domain LVJ82_00275 PF08529 NusA N-terminal domain LVJ82_00280 PF00009 Elongation factor Tu GTP binding domain LVJ82_00280 PF04760 Translation initiation factor IF-2, N-terminal region LVJ82_00280 PF11987 Translation-initiation factor 2 LVJ82_00285 PF02033 Ribosome-binding factor A LVJ82_00290 PF00270 DEAD/DEAH box helicase LVJ82_00290 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LVJ82_00290 PF17191 RecG wedge domain LVJ82_00305 PF01509 TruB family pseudouridylate synthase (N terminal domain) LVJ82_00305 PF16198 tRNA pseudouridylate synthase B C-terminal domain LVJ82_00305 PF09157 Pseudouridine synthase II TruB, C-terminal LVJ82_00310 PF00312 Ribosomal protein S15 LVJ82_00315 PF03725 3' exoribonuclease family, domain 2 LVJ82_00315 PF00013 KH domain LVJ82_00315 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LVJ82_00315 PF01138 3' exoribonuclease family, domain 1 LVJ82_00315 PF00575 S1 RNA binding domain LVJ82_00325 PF06983 3-demethylubiquinone-9 3-methyltransferase LVJ82_00335 PF01235 Sodium:alanine symporter family LVJ82_00340 PF01209 ubiE/COQ5 methyltransferase family LVJ82_00350 PF02547 Queuosine biosynthesis protein LVJ82_00355 PF01220 Dehydroquinase class II LVJ82_00360 PF00364 Biotin-requiring enzyme LVJ82_00365 PF02785 Biotin carboxylase C-terminal domain LVJ82_00365 PF00289 Biotin carboxylase, N-terminal domain LVJ82_00365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LVJ82_00380 PF00583 Acetyltransferase (GNAT) family LVJ82_00380 PF00696 Amino acid kinase family LVJ82_00385 PF04362 Bacterial Fe(2+) trafficking LVJ82_00390 PF02503 Polyphosphate kinase middle domain LVJ82_00390 PF13090 Polyphosphate kinase C-terminal domain 2 LVJ82_00390 PF17941 Polyphosphate kinase C-terminal domain 1 LVJ82_00390 PF13089 Polyphosphate kinase N-terminal domain LVJ82_00410 PF01195 Peptidyl-tRNA hydrolase LVJ82_00415 PF03658 RnfH family Ubiquitin LVJ82_00420 PF03364 Polyketide cyclase / dehydrase and lipid transport LVJ82_00425 PF01668 SmpB protein LVJ82_00435 PF00117 Glutamine amidotransferase class-I LVJ82_00435 PF00958 GMP synthase C terminal domain LVJ82_00435 PF02540 NAD synthase LVJ82_00440 PF13356 Arm DNA-binding domain LVJ82_00440 PF14659 Phage integrase, N-terminal SAM-like domain LVJ82_00440 PF00589 Phage integrase family LVJ82_00550 PF09669 Phage regulatory protein Rha (Phage_pRha) LVJ82_00550 PF10549 ORF11CD3 domain LVJ82_00630 PF04466 Phage terminase large subunit LVJ82_00630 PF17288 Terminase RNAseH like domain LVJ82_00710 PF08346 AntA/AntB antirepressor LVJ82_00710 PF10548 P22AR C-terminal domain LVJ82_00795 PF00436 Single-strand binding protein family LVJ82_00835 PF00186 Dihydrofolate reductase LVJ82_00870 PF00156 Phosphoribosyl transferase domain LVJ82_00875 PF00625 Guanylate kinase LVJ82_00880 PF01192 RNA polymerase Rpb6 LVJ82_00885 PF02824 TGS domain LVJ82_00885 PF04607 Region found in RelA / SpoT proteins LVJ82_00885 PF13291 ACT domain LVJ82_00890 PF01165 Ribosomal protein S21 LVJ82_00900 PF08278 DNA primase DnaG DnaB-binding LVJ82_00900 PF01807 CHC2 zinc finger LVJ82_00900 PF10410 DnaB-helicase binding domain of primase LVJ82_00900 PF08275 DNA primase catalytic core, N-terminal domain LVJ82_00905 PF04539 Sigma-70 region 3 LVJ82_00905 PF04545 Sigma-70, region 4 LVJ82_00905 PF04542 Sigma-70 region 2 LVJ82_00905 PF00140 Sigma-70 factor, region 1.2 LVJ82_00905 PF04546 Sigma-70, non-essential region LVJ82_00905 PF03979 Sigma-70 factor, region 1.1 LVJ82_00920 PF00534 Glycosyl transferases group 1 LVJ82_00920 PF13439 Glycosyltransferase Family 4 LVJ82_00925 PF00127 Copper binding proteins, plastocyanin/azurin family LVJ82_00930 PF04381 Putative exonuclease, RdgC LVJ82_00940 PF00145 C-5 cytosine-specific DNA methylase LVJ82_01040 PF04233 Phage Mu protein F like protein LVJ82_01115 PF00216 Bacterial DNA-binding protein LVJ82_01130 PF07352 Bacteriophage Mu Gam like protein LVJ82_01175 PF13693 Winged helix-turn-helix DNA-binding LVJ82_01190 PF00465 Iron-containing alcohol dehydrogenase LVJ82_01195 PF00171 Aldehyde dehydrogenase family LVJ82_01195 PF14850 DNA-binding domain of Proline dehydrogenase LVJ82_01195 PF01619 Proline dehydrogenase LVJ82_01195 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LVJ82_01200 PF07690 Major Facilitator Superfamily LVJ82_01210 PF00596 Class II Aldolase and Adducin N-terminal domain LVJ82_01220 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_01225 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_01230 PF00005 ABC transporter LVJ82_01230 PF08402 TOBE domain LVJ82_01240 PF00202 Aminotransferase class-III LVJ82_01245 PF00392 Bacterial regulatory proteins, gntR family LVJ82_01245 PF07729 FCD domain LVJ82_01255 PF00005 ABC transporter LVJ82_01255 PF00664 ABC transporter transmembrane region LVJ82_01265 PF00455 DeoR C terminal sensor domain LVJ82_01265 PF08220 DeoR-like helix-turn-helix domain LVJ82_01270 PF03956 Lysine exporter LysO LVJ82_01275 PF00970 Oxidoreductase FAD-binding domain LVJ82_01275 PF00175 Oxidoreductase NAD-binding domain LVJ82_01280 PF00664 ABC transporter transmembrane region LVJ82_01280 PF00005 ABC transporter LVJ82_01285 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_01285 PF14821 Threonine synthase N terminus LVJ82_01295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LVJ82_01300 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LVJ82_01300 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LVJ82_01305 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_01305 PF16193 AAA C-terminal domain LVJ82_01305 PF12002 MgsA AAA+ ATPase C terminal LVJ82_01310 PF01758 Sodium Bile acid symporter family LVJ82_01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_01315 PF03466 LysR substrate binding domain LVJ82_01325 PF13193 AMP-binding enzyme C-terminal domain LVJ82_01325 PF00501 AMP-binding enzyme LVJ82_01340 PF03831 PhnA domain LVJ82_01340 PF08274 PhnA Zinc-Ribbon LVJ82_01365 PF00083 Sugar (and other) transporter LVJ82_01370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_01370 PF03466 LysR substrate binding domain LVJ82_01425 PF01548 Transposase LVJ82_01425 PF02371 Transposase IS116/IS110/IS902 family LVJ82_01435 PF13193 AMP-binding enzyme C-terminal domain LVJ82_01435 PF16177 Acetyl-coenzyme A synthetase N-terminus LVJ82_01435 PF00501 AMP-binding enzyme LVJ82_01440 PF00474 Sodium:solute symporter family LVJ82_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_01450 PF03466 LysR substrate binding domain LVJ82_01455 PF00155 Aminotransferase class I and II LVJ82_01465 PF02441 Flavoprotein LVJ82_01480 PF01026 TatD related DNase LVJ82_01490 PF00491 Arginase family LVJ82_01500 PF00171 Aldehyde dehydrogenase family LVJ82_01505 PF07833 Copper amine oxidase N-terminal domain LVJ82_01505 PF02727 Copper amine oxidase, N2 domain LVJ82_01505 PF02728 Copper amine oxidase, N3 domain LVJ82_01505 PF01179 Copper amine oxidase, enzyme domain LVJ82_01515 PF12724 Flavodoxin domain LVJ82_01520 PF01883 Iron-sulfur cluster assembly protein LVJ82_01520 PF10609 NUBPL iron-transfer P-loop NTPase LVJ82_01535 PF08173 Membrane bound YbgT-like protein LVJ82_01540 PF02322 Cytochrome bd terminal oxidase subunit II LVJ82_01545 PF01654 Cytochrome bd terminal oxidase subunit I LVJ82_01555 PF03466 LysR substrate binding domain LVJ82_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_01565 PF00324 Amino acid permease LVJ82_01570 PF07722 Peptidase C26 LVJ82_01575 PF00465 Iron-containing alcohol dehydrogenase LVJ82_01580 PF00171 Aldehyde dehydrogenase family LVJ82_01585 PF00120 Glutamine synthetase, catalytic domain LVJ82_01585 PF03951 Glutamine synthetase, beta-Grasp domain LVJ82_01590 PF01418 Helix-turn-helix domain, rpiR family LVJ82_01590 PF01380 SIS domain LVJ82_01590 PF02685 Glucokinase LVJ82_01610 PF03412 Peptidase C39 family LVJ82_01610 PF00664 ABC transporter transmembrane region LVJ82_01610 PF00005 ABC transporter LVJ82_01620 PF02321 Outer membrane efflux protein LVJ82_01625 PF06018 CodY GAF-like domain LVJ82_01625 PF17853 GGDEF-like domain LVJ82_01625 PF13556 PucR C-terminal helix-turn-helix domain LVJ82_01630 PF01593 Flavin containing amine oxidoreductase LVJ82_01640 PF01266 FAD dependent oxidoreductase LVJ82_01650 PF00083 Sugar (and other) transporter LVJ82_01660 PF01042 Endoribonuclease L-PSP LVJ82_01665 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LVJ82_01665 PF01266 FAD dependent oxidoreductase LVJ82_01670 PF01965 DJ-1/PfpI family LVJ82_01675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LVJ82_01675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LVJ82_01680 PF00596 Class II Aldolase and Adducin N-terminal domain LVJ82_01710 PF02785 Biotin carboxylase C-terminal domain LVJ82_01710 PF00289 Biotin carboxylase, N-terminal domain LVJ82_01710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LVJ82_01715 PF00364 Biotin-requiring enzyme LVJ82_01720 PF03746 LamB/YcsF family LVJ82_01725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_01725 PF03466 LysR substrate binding domain LVJ82_01730 PF00267 Gram-negative porin LVJ82_01735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LVJ82_01735 PF00205 Thiamine pyrophosphate enzyme, central domain LVJ82_01735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LVJ82_01740 PF00171 Aldehyde dehydrogenase family LVJ82_01745 PF03447 Homoserine dehydrogenase, NAD binding domain LVJ82_01745 PF01958 Domain of unknown function DUF108 LVJ82_01755 PF00561 alpha/beta hydrolase fold LVJ82_01765 PF07690 Major Facilitator Superfamily LVJ82_01770 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_01770 PF14759 Reductase C-terminal LVJ82_01795 PF00355 Rieske [2Fe-2S] domain LVJ82_01800 PF01614 Bacterial transcriptional regulator LVJ82_01800 PF09339 IclR helix-turn-helix domain LVJ82_01805 PF13356 Arm DNA-binding domain LVJ82_01805 PF00589 Phage integrase family LVJ82_01810 PF00672 HAMP domain LVJ82_01810 PF07228 Stage II sporulation protein E (SpoIIE) LVJ82_01815 PF01740 STAS domain LVJ82_01860 PF03230 Antirestriction protein LVJ82_01865 PF09588 YqaJ-like viral recombinase domain LVJ82_01895 PF02384 N-6 DNA Methylase LVJ82_01900 PF00176 SNF2 family N-terminal domain LVJ82_01900 PF00271 Helicase conserved C-terminal domain LVJ82_01935 PF01381 Helix-turn-helix LVJ82_01975 PF05930 Prophage CP4-57 regulatory protein (AlpA) LVJ82_02005 PF13148 Protein of unknown function (DUF3987) LVJ82_02025 PF09588 YqaJ-like viral recombinase domain LVJ82_02075 PF02132 RecR protein LVJ82_02075 PF13662 Toprim domain LVJ82_02080 PF02575 YbaB/EbfC DNA-binding family LVJ82_02085 PF12170 DNA polymerase III tau subunit V interacting with alpha LVJ82_02085 PF12169 DNA polymerase III subunits gamma and tau domain III LVJ82_02085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LVJ82_02090 PF13406 Transglycosylase SLT domain LVJ82_02095 PF01281 Ribosomal protein L9, N-terminal domain LVJ82_02095 PF03948 Ribosomal protein L9, C-terminal domain LVJ82_02100 PF01084 Ribosomal protein S18 LVJ82_02110 PF01250 Ribosomal protein S6 LVJ82_02115 PF00924 Mechanosensitive ion channel LVJ82_02115 PF12795 Mechanosensitive ion channel porin domain LVJ82_02115 PF12794 Mechanosensitive ion channel inner membrane domain 1 LVJ82_02120 PF00293 NUDIX domain LVJ82_02125 PF03372 Endonuclease/Exonuclease/phosphatase family LVJ82_02130 PF09383 NIL domain LVJ82_02130 PF00005 ABC transporter LVJ82_02135 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_02140 PF03180 NLPA lipoprotein LVJ82_02145 PF03180 NLPA lipoprotein LVJ82_02210 PF02371 Transposase IS116/IS110/IS902 family LVJ82_02210 PF01548 Transposase LVJ82_02235 PF00892 EamA-like transporter family LVJ82_02245 PF00270 DEAD/DEAH box helicase LVJ82_02245 PF00271 Helicase conserved C-terminal domain LVJ82_02245 PF17191 RecG wedge domain LVJ82_02250 PF05175 Methyltransferase small domain LVJ82_02260 PF05525 Branched-chain amino acid transport protein LVJ82_02295 PF00120 Glutamine synthetase, catalytic domain LVJ82_02305 PF00749 tRNA synthetases class I (E and Q), catalytic domain LVJ82_02305 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LVJ82_02310 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_02315 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_02320 PF17946 RecC C-terminal domain LVJ82_02325 PF12705 PD-(D/E)XK nuclease superfamily LVJ82_02325 PF00580 UvrD/REP helicase N-terminal domain LVJ82_02325 PF13361 UvrD-like helicase C-terminal domain LVJ82_02335 PF00154 recA bacterial DNA recombination protein LVJ82_02350 PF09339 IclR helix-turn-helix domain LVJ82_02350 PF01614 Bacterial transcriptional regulator LVJ82_02355 PF00270 DEAD/DEAH box helicase LVJ82_02355 PF00271 Helicase conserved C-terminal domain LVJ82_02360 PF07729 FCD domain LVJ82_02360 PF00392 Bacterial regulatory proteins, gntR family LVJ82_02365 PF02754 Cysteine-rich domain LVJ82_02370 PF02589 LUD domain LVJ82_02375 PF11870 Domain of unknown function (DUF3390) LVJ82_02375 PF13183 4Fe-4S dicluster domain LVJ82_02375 PF02589 LUD domain LVJ82_02380 PF02652 L-lactate permease LVJ82_02385 PF07687 Peptidase dimerisation domain LVJ82_02385 PF01546 Peptidase family M20/M25/M40 LVJ82_02400 PF04279 Intracellular septation protein A LVJ82_02410 PF00586 AIR synthase related protein, N-terminal domain LVJ82_02410 PF02769 AIR synthase related protein, C-terminal domain LVJ82_02415 PF07690 Major Facilitator Superfamily LVJ82_02440 PF05683 Fumarase C-terminus LVJ82_02440 PF05681 Fumarate hydratase (Fumerase) LVJ82_02445 PF02254 TrkA-N domain LVJ82_02445 PF02080 TrkA-C domain LVJ82_02450 PF02386 Cation transport protein LVJ82_02455 PF01464 Transglycosylase SLT domain LVJ82_02455 PF14718 Soluble lytic murein transglycosylase L domain LVJ82_02470 PF02515 CoA-transferase family III LVJ82_02475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LVJ82_02475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LVJ82_02475 PF02770 Acyl-CoA dehydrogenase, middle domain LVJ82_02480 PF09339 IclR helix-turn-helix domain LVJ82_02490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LVJ82_02495 PF01274 Malate synthase LVJ82_02505 PF02254 TrkA-N domain LVJ82_02505 PF00999 Sodium/hydrogen exchanger family LVJ82_02510 PF01925 Sulfite exporter TauE/SafE LVJ82_02520 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LVJ82_02530 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LVJ82_02530 PF03900 Porphobilinogen deaminase, C-terminal domain LVJ82_02540 PF05491 RuvB C-terminal winged helix domain LVJ82_02540 PF05496 Holliday junction DNA helicase RuvB P-loop domain LVJ82_02540 PF17864 RuvB AAA lid domain LVJ82_02545 PF00072 Response regulator receiver domain LVJ82_02545 PF00486 Transcriptional regulatory protein, C terminal LVJ82_02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_02550 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_02550 PF00672 HAMP domain LVJ82_02550 PF13426 PAS domain LVJ82_02560 PF13098 Thioredoxin-like domain LVJ82_02560 PF10411 Disulfide bond isomerase protein N-terminus LVJ82_02580 PF02153 Prephenate dehydrogenase LVJ82_02580 PF01842 ACT domain LVJ82_02600 PF00115 Cytochrome C and Quinol oxidase polypeptide I LVJ82_02620 PF13746 4Fe-4S dicluster domain LVJ82_02620 PF12801 4Fe-4S binding domain LVJ82_02620 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LVJ82_02630 PF03949 Malic enzyme, NAD binding domain LVJ82_02630 PF00390 Malic enzyme, N-terminal domain LVJ82_02630 PF01515 Phosphate acetyl/butaryl transferase LVJ82_02640 PF17676 LD-carboxypeptidase C-terminal domain LVJ82_02640 PF02016 LD-carboxypeptidase N-terminal domain LVJ82_02655 PF00902 Sec-independent protein translocase protein (TatC) LVJ82_02660 PF02416 mttA/Hcf106 family LVJ82_02665 PF02416 mttA/Hcf106 family LVJ82_02675 PF10415 Fumarase C C-terminus LVJ82_02675 PF00206 Lyase LVJ82_02680 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LVJ82_02685 PF01502 Phosphoribosyl-AMP cyclohydrolase LVJ82_02690 PF00977 Histidine biosynthesis protein LVJ82_02700 PF00977 Histidine biosynthesis protein LVJ82_02705 PF00117 Glutamine amidotransferase class-I LVJ82_02715 PF00155 Aminotransferase class I and II LVJ82_02725 PF07731 Multicopper oxidase LVJ82_02725 PF07732 Multicopper oxidase LVJ82_02730 PF05221 S-adenosyl-L-homocysteine hydrolase LVJ82_02730 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LVJ82_02755 PF01965 DJ-1/PfpI family LVJ82_02755 PF12833 Helix-turn-helix domain LVJ82_02760 PF01321 Creatinase/Prolidase N-terminal domain LVJ82_02760 PF00557 Metallopeptidase family M24 LVJ82_02765 PF00083 Sugar (and other) transporter LVJ82_02765 PF08946 Osmosensory transporter coiled coil LVJ82_02785 PF00583 Acetyltransferase (GNAT) family LVJ82_02800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LVJ82_02815 PF01266 FAD dependent oxidoreductase LVJ82_02820 PF13416 Bacterial extracellular solute-binding protein LVJ82_02840 PF00920 Dehydratase family LVJ82_02880 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LVJ82_02885 PF04963 Sigma-54 factor, core binding domain LVJ82_02885 PF04552 Sigma-54, DNA binding domain LVJ82_02885 PF00309 Sigma-54 factor, Activator interacting domain (AID) LVJ82_02890 PF12399 Branched-chain amino acid ATP-binding cassette transporter LVJ82_02890 PF00005 ABC transporter LVJ82_02895 PF03968 OstA-like protein LVJ82_02910 PF01380 SIS domain LVJ82_02910 PF00571 CBS domain LVJ82_02925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LVJ82_02930 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_02935 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_02935 PF12911 N-terminal TM domain of oligopeptide transport permease C LVJ82_02940 PF00005 ABC transporter LVJ82_02940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LVJ82_02945 PF00005 ABC transporter LVJ82_02945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LVJ82_02955 PF01810 LysE type translocator LVJ82_02975 PF02091 Glycyl-tRNA synthetase alpha subunit LVJ82_02980 PF05746 DALR anticodon binding domain LVJ82_02980 PF02092 Glycyl-tRNA synthetase beta subunit LVJ82_02985 PF03631 Virulence factor BrkB LVJ82_02990 PF00127 Copper binding proteins, plastocyanin/azurin family LVJ82_02995 PF01594 AI-2E family transporter LVJ82_03010 PF07690 Major Facilitator Superfamily LVJ82_03065 PF01037 Lrp/AsnC ligand binding domain LVJ82_03075 PF13556 PucR C-terminal helix-turn-helix domain LVJ82_03075 PF05651 Putative sugar diacid recognition LVJ82_03075 PF17853 GGDEF-like domain LVJ82_03080 PF01266 FAD dependent oxidoreductase LVJ82_03085 PF00171 Aldehyde dehydrogenase family LVJ82_03090 PF00324 Amino acid permease LVJ82_03105 PF00872 Transposase, Mutator family LVJ82_03115 PF02938 GAD domain LVJ82_03115 PF00152 tRNA synthetases class II (D, K and N) LVJ82_03115 PF01336 OB-fold nucleic acid binding domain LVJ82_03125 PF02253 Phospholipase A1 LVJ82_03130 PF01649 Ribosomal protein S20 LVJ82_03135 PF04972 BON domain LVJ82_03135 PF01476 LysM domain LVJ82_03140 PF01636 Phosphotransferase enzyme family LVJ82_03155 PF07690 Major Facilitator Superfamily LVJ82_03160 PF01557 Fumarylacetoacetate (FAA) hydrolase family LVJ82_03165 PF13417 Glutathione S-transferase, N-terminal domain LVJ82_03170 PF01494 FAD binding domain LVJ82_03175 PF07883 Cupin domain LVJ82_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_03180 PF03466 LysR substrate binding domain LVJ82_03195 PF02592 Putative vitamin uptake transporter LVJ82_03200 PF04430 Protein of unknown function (DUF498/DUF598) LVJ82_03205 PF01842 ACT domain LVJ82_03205 PF00742 Homoserine dehydrogenase LVJ82_03205 PF03447 Homoserine dehydrogenase, NAD binding domain LVJ82_03235 PF00717 Peptidase S24-like LVJ82_03240 PF11799 impB/mucB/samB family C-terminal domain LVJ82_03240 PF00817 impB/mucB/samB family LVJ82_03240 PF11798 IMS family HHH motif LVJ82_03240 PF13438 Domain of unknown function (DUF4113) LVJ82_03245 PF00850 Histone deacetylase domain LVJ82_03250 PF00083 Sugar (and other) transporter LVJ82_03255 PF03466 LysR substrate binding domain LVJ82_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_03270 PF00550 Phosphopantetheine attachment site LVJ82_03275 PF00550 Phosphopantetheine attachment site LVJ82_03285 PF07977 FabA-like domain LVJ82_03315 PF04820 Tryptophan halogenase LVJ82_03325 PF00109 Beta-ketoacyl synthase, N-terminal domain LVJ82_03325 PF02801 Beta-ketoacyl synthase, C-terminal domain LVJ82_03340 PF00109 Beta-ketoacyl synthase, N-terminal domain LVJ82_03340 PF02801 Beta-ketoacyl synthase, C-terminal domain LVJ82_03350 PF01648 4'-phosphopantetheinyl transferase superfamily LVJ82_03355 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_03370 PF02649 Type I GTP cyclohydrolase folE2 LVJ82_03380 PF01053 Cys/Met metabolism PLP-dependent enzyme LVJ82_03410 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_03415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_03415 PF03466 LysR substrate binding domain LVJ82_03425 PF00155 Aminotransferase class I and II LVJ82_03465 PF02678 Pirin LVJ82_03465 PF05726 Pirin C-terminal cupin domain LVJ82_03490 PF03553 Na+/H+ antiporter family LVJ82_03495 PF00850 Histone deacetylase domain LVJ82_03500 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LVJ82_03505 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_03510 PF00005 ABC transporter LVJ82_03515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LVJ82_03520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_03520 PF03466 LysR substrate binding domain LVJ82_03525 PF07690 Major Facilitator Superfamily LVJ82_03530 PF00795 Carbon-nitrogen hydrolase LVJ82_03540 PF07690 Major Facilitator Superfamily LVJ82_03560 PF07690 Major Facilitator Superfamily LVJ82_03565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LVJ82_03565 PF13378 Enolase C-terminal domain-like LVJ82_03570 PF01557 Fumarylacetoacetate (FAA) hydrolase family LVJ82_03580 PF00392 Bacterial regulatory proteins, gntR family LVJ82_03580 PF07729 FCD domain LVJ82_03605 PF05930 Prophage CP4-57 regulatory protein (AlpA) LVJ82_03635 PF03466 LysR substrate binding domain LVJ82_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_03640 PF00083 Sugar (and other) transporter LVJ82_03660 PF09588 YqaJ-like viral recombinase domain LVJ82_03665 PF03230 Antirestriction protein LVJ82_03710 PF10670 Domain of unknown function (DUF4198) LVJ82_03735 PF00589 Phage integrase family LVJ82_03735 PF13356 Arm DNA-binding domain LVJ82_03735 PF14659 Phage integrase, N-terminal SAM-like domain LVJ82_03740 PF00120 Glutamine synthetase, catalytic domain LVJ82_03745 PF08402 TOBE domain LVJ82_03745 PF00005 ABC transporter LVJ82_03750 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_03755 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_03765 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_03770 PF00970 Oxidoreductase FAD-binding domain LVJ82_03770 PF00175 Oxidoreductase NAD-binding domain LVJ82_03780 PF00749 tRNA synthetases class I (E and Q), catalytic domain LVJ82_03785 PF00156 Phosphoribosyl transferase domain LVJ82_03790 PF01613 Flavin reductase like domain LVJ82_03795 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_03795 PF00175 Oxidoreductase NAD-binding domain LVJ82_03810 PF00355 Rieske [2Fe-2S] domain LVJ82_03810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LVJ82_03825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LVJ82_03835 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LVJ82_03835 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LVJ82_03840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LVJ82_03840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LVJ82_03850 PF07690 Major Facilitator Superfamily LVJ82_03855 PF01425 Amidase LVJ82_03860 PF00578 AhpC/TSA family LVJ82_03865 PF12833 Helix-turn-helix domain LVJ82_03865 PF02311 AraC-like ligand binding domain LVJ82_03870 PF07690 Major Facilitator Superfamily LVJ82_03875 PF02562 PhoH-like protein LVJ82_03875 PF13638 PIN domain LVJ82_03885 PF11412 Disulphide bond corrector protein DsbC LVJ82_03885 PF02683 Cytochrome C biogenesis protein transmembrane region LVJ82_03885 PF00085 Thioredoxin LVJ82_03895 PF17827 PrmC N-terminal domain LVJ82_03895 PF05175 Methyltransferase small domain LVJ82_03900 PF01769 Divalent cation transporter LVJ82_03900 PF00571 CBS domain LVJ82_03900 PF03448 MgtE intracellular N domain LVJ82_03910 PF08334 Type II secretion system (T2SS), protein G LVJ82_03910 PF07963 Prokaryotic N-terminal methylation motif LVJ82_03915 PF07963 Prokaryotic N-terminal methylation motif LVJ82_03915 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LVJ82_03920 PF04359 Protein of unknown function (DUF493) LVJ82_03925 PF03099 Biotin/lipoate A/B protein ligase family LVJ82_03930 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LVJ82_03930 PF04055 Radical SAM superfamily LVJ82_03935 PF02541 Ppx/GppA phosphatase family LVJ82_03940 PF01544 CorA-like Mg2+ transporter protein LVJ82_03945 PF03061 Thioesterase superfamily LVJ82_03950 PF00677 Lumazine binding domain LVJ82_03955 PF00925 GTP cyclohydrolase II LVJ82_03955 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LVJ82_03975 PF01053 Cys/Met metabolism PLP-dependent enzyme LVJ82_03980 PF00156 Phosphoribosyl transferase domain LVJ82_04000 PF02875 Mur ligase family, glutamate ligase domain LVJ82_04000 PF08245 Mur ligase middle domain LVJ82_04015 PF00005 ABC transporter LVJ82_04015 PF12848 ABC transporter LVJ82_04015 PF16326 ABC transporter C-terminal domain LVJ82_04020 PF00877 NlpC/P60 family LVJ82_04025 PF00871 Acetokinase family LVJ82_04030 PF00691 OmpA family LVJ82_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_04035 PF03466 LysR substrate binding domain LVJ82_04105 PF00698 Acyl transferase domain LVJ82_04115 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LVJ82_04115 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LVJ82_04120 PF02504 Fatty acid synthesis protein LVJ82_04125 PF01783 Ribosomal L32p protein family LVJ82_04135 PF02545 Maf-like protein LVJ82_04140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LVJ82_04150 PF01520 N-acetylmuramoyl-L-alanine amidase LVJ82_04150 PF11741 AMIN domain LVJ82_04155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LVJ82_04160 PF08331 Domain of unknown function (DUF1730) LVJ82_04165 PF00994 Probable molybdopterin binding domain LVJ82_04165 PF18146 Damage-inducible protein CinA KH domain LVJ82_04165 PF02464 Competence-damaged protein LVJ82_04185 PF00797 N-acetyltransferase LVJ82_04195 PF00106 short chain dehydrogenase LVJ82_04210 PF02272 DHHA1 domain LVJ82_04210 PF01411 tRNA synthetases class II (A) LVJ82_04210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LVJ82_04215 PF02445 Quinolinate synthetase A protein LVJ82_04220 PF02910 Fumarate reductase flavoprotein C-term LVJ82_04220 PF00890 FAD binding domain LVJ82_04225 PF01040 UbiA prenyltransferase family LVJ82_04230 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LVJ82_04235 PF00510 Cytochrome c oxidase subunit III LVJ82_04240 PF00115 Cytochrome C and Quinol oxidase polypeptide I LVJ82_04245 PF06481 COX Aromatic Rich Motif LVJ82_04245 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LVJ82_04250 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LVJ82_04255 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LVJ82_04260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LVJ82_04265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LVJ82_04290 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_04295 PF02631 RecX family LVJ82_04305 PF01645 Conserved region in glutamate synthase LVJ82_04310 PF03167 Uracil DNA glycosylase superfamily LVJ82_04320 PF01494 FAD binding domain LVJ82_04325 PF01494 FAD binding domain LVJ82_04330 PF00717 Peptidase S24-like LVJ82_04355 PF00083 Sugar (and other) transporter LVJ82_04360 PF00701 Dihydrodipicolinate synthetase family LVJ82_04375 PF09330 D-lactate dehydrogenase, membrane binding LVJ82_04375 PF01565 FAD binding domain LVJ82_04380 PF07836 DmpG-like communication domain LVJ82_04380 PF00682 HMGL-like LVJ82_04400 PF00106 short chain dehydrogenase LVJ82_04425 PF13195 Protein of unknown function (DUF4011) LVJ82_04425 PF13087 AAA domain LVJ82_04425 PF13086 AAA domain LVJ82_04425 PF13195 Protein of unknown function (DUF4011) LVJ82_04425 PF13087 AAA domain LVJ82_04425 PF13086 AAA domain LVJ82_04445 PF09588 YqaJ-like viral recombinase domain LVJ82_04450 PF03230 Antirestriction protein LVJ82_04465 PF01381 Helix-turn-helix LVJ82_04490 PF00589 Phage integrase family LVJ82_04490 PF13356 Arm DNA-binding domain LVJ82_04600 PF17482 Phage tail sheath C-terminal domain LVJ82_04600 PF04984 Phage tail sheath protein subtilisin-like domain LVJ82_04640 PF00717 Peptidase S24-like LVJ82_04640 PF01381 Helix-turn-helix LVJ82_04675 PF00436 Single-strand binding protein family LVJ82_04685 PF05840 Bacteriophage replication gene A protein (GPA) LVJ82_04740 PF01066 CDP-alcohol phosphatidyltransferase LVJ82_04745 PF01541 GIY-YIG catalytic domain LVJ82_04745 PF08459 UvrC Helix-hairpin-helix N-terminal LVJ82_04745 PF02151 UvrB/uvrC motif LVJ82_04760 PF00478 IMP dehydrogenase / GMP reductase domain LVJ82_04760 PF00571 CBS domain LVJ82_04765 PF09335 SNARE associated Golgi protein LVJ82_04770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LVJ82_04770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LVJ82_04770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LVJ82_04770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LVJ82_04775 PF00809 Pterin binding enzyme LVJ82_04780 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_04780 PF17862 AAA+ lid domain LVJ82_04780 PF06480 FtsH Extracellular LVJ82_04780 PF01434 Peptidase family M41 LVJ82_04785 PF01728 FtsJ-like methyltransferase LVJ82_04790 PF01985 CRS1 / YhbY (CRM) domain LVJ82_04800 PF01272 Transcription elongation factor, GreA/GreB, C-term LVJ82_04800 PF03449 Transcription elongation factor, N-terminal LVJ82_04805 PF00436 Single-strand binding protein family LVJ82_04810 PF07690 Major Facilitator Superfamily LVJ82_04815 PF01464 Transglycosylase SLT domain LVJ82_04815 PF01551 Peptidase family M23 LVJ82_04815 PF10145 Phage-related minor tail protein LVJ82_04820 PF01979 Amidohydrolase family LVJ82_04825 PF01206 Sulfurtransferase TusA LVJ82_04835 PF01925 Sulfite exporter TauE/SafE LVJ82_04840 PF04389 Peptidase family M28 LVJ82_04850 PF13091 PLD-like domain LVJ82_04850 PF13396 Phospholipase_D-nuclease N-terminal LVJ82_04855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_04855 PF03466 LysR substrate binding domain LVJ82_04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_04860 PF03466 LysR substrate binding domain LVJ82_04870 PF07690 Major Facilitator Superfamily LVJ82_04890 PF00793 DAHP synthetase I family LVJ82_04895 PF06418 CTP synthase N-terminus LVJ82_04895 PF00117 Glutamine amidotransferase class-I LVJ82_04910 PF00830 Ribosomal L28 family LVJ82_04915 PF00471 Ribosomal protein L33 LVJ82_04920 PF04226 Transglycosylase associated protein LVJ82_04925 PF01168 Alanine racemase, N-terminal domain LVJ82_04925 PF00842 Alanine racemase, C-terminal domain LVJ82_04930 PF01266 FAD dependent oxidoreductase LVJ82_04935 PF01037 Lrp/AsnC ligand binding domain LVJ82_04940 PF01523 Putative modulator of DNA gyrase LVJ82_04950 PF03309 Type III pantothenate kinase LVJ82_04950 PF02237 Biotin protein ligase C terminal domain LVJ82_04950 PF03099 Biotin/lipoate A/B protein ligase family LVJ82_04955 PF01467 Cytidylyltransferase-like LVJ82_04960 PF00149 Calcineurin-like phosphoesterase LVJ82_04965 PF00909 Ammonium Transporter Family LVJ82_04970 PF00543 Nitrogen regulatory protein P-II LVJ82_04985 PF01960 ArgJ family LVJ82_04990 PF00857 Isochorismatase family LVJ82_05005 PF01329 Pterin 4 alpha carbinolamine dehydratase LVJ82_05015 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LVJ82_05030 PF01118 Semialdehyde dehydrogenase, NAD binding domain LVJ82_05030 PF02774 Semialdehyde dehydrogenase, dimerisation domain LVJ82_05060 PF00005 ABC transporter LVJ82_05065 PF00398 Ribosomal RNA adenine dimethylase LVJ82_05080 PF00106 short chain dehydrogenase LVJ82_05085 PF02545 Maf-like protein LVJ82_05120 PF00849 RNA pseudouridylate synthase LVJ82_05120 PF01479 S4 domain LVJ82_05130 PF02678 Pirin LVJ82_05130 PF17954 Quercetinase C-terminal cupin domain LVJ82_05140 PF00877 NlpC/P60 family LVJ82_05145 PF03109 ABC1 family LVJ82_05155 PF01027 Inhibitor of apoptosis-promoting Bax1 LVJ82_05160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LVJ82_05160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LVJ82_05165 PF01467 Cytidylyltransferase-like LVJ82_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_05170 PF03466 LysR substrate binding domain LVJ82_05175 PF08267 Cobalamin-independent synthase, N-terminal domain LVJ82_05175 PF01717 Cobalamin-independent synthase, Catalytic domain LVJ82_05180 PF00267 Gram-negative porin LVJ82_05190 PF10150 Ribonuclease E/G family LVJ82_05190 PF00575 S1 RNA binding domain LVJ82_05195 PF06426 Serine acetyltransferase, N-terminal LVJ82_05195 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_05220 PF00155 Aminotransferase class I and II LVJ82_05225 PF00109 Beta-ketoacyl synthase, N-terminal domain LVJ82_05225 PF02801 Beta-ketoacyl synthase, C-terminal domain LVJ82_05230 PF00550 Phosphopantetheine attachment site LVJ82_05235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LVJ82_05235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LVJ82_05240 PF13458 Periplasmic binding protein LVJ82_05245 PF07715 TonB-dependent Receptor Plug Domain LVJ82_05245 PF00593 TonB dependent receptor LVJ82_05250 PF01497 Periplasmic binding protein LVJ82_05260 PF05164 Cell division protein ZapA LVJ82_05270 PF00572 Ribosomal protein L13 LVJ82_05275 PF00380 Ribosomal protein S9/S16 LVJ82_05280 PF02774 Semialdehyde dehydrogenase, dimerisation domain LVJ82_05280 PF01118 Semialdehyde dehydrogenase, NAD binding domain LVJ82_05285 PF01521 Iron-sulphur cluster biosynthesis LVJ82_05295 PF11104 Type IV pilus assembly protein PilM; LVJ82_05305 PF04350 Pilus assembly protein, PilO LVJ82_05315 PF11741 AMIN domain LVJ82_05315 PF00263 Bacterial type II and III secretion system protein LVJ82_05315 PF03958 Bacterial type II/III secretion system short domain LVJ82_05315 PF07660 Secretin and TonB N terminus short domain LVJ82_05320 PF01202 Shikimate kinase LVJ82_05325 PF01761 3-dehydroquinate synthase LVJ82_05330 PF00583 Acetyltransferase (GNAT) family LVJ82_05330 PF13380 CoA binding domain LVJ82_05330 PF13607 Succinyl-CoA ligase like flavodoxin domain LVJ82_05335 PF00886 Ribosomal protein S16 LVJ82_05340 PF05239 PRC-barrel domain LVJ82_05340 PF01782 RimM N-terminal domain LVJ82_05350 PF01245 Ribosomal protein L19 LVJ82_05360 PF03976 Polyphosphate kinase 2 (PPK2) LVJ82_05365 PF04715 Anthranilate synthase component I, N terminal region LVJ82_05365 PF00425 chorismate binding enzyme LVJ82_05365 PF00117 Glutamine amidotransferase class-I LVJ82_05375 PF02233 NAD(P) transhydrogenase beta subunit LVJ82_05380 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LVJ82_05380 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LVJ82_05380 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LVJ82_05400 PF00378 Enoyl-CoA hydratase/isomerase LVJ82_05405 PF07690 Major Facilitator Superfamily LVJ82_05435 PF00391 PEP-utilising enzyme, mobile domain LVJ82_05435 PF02896 PEP-utilising enzyme, TIM barrel domain LVJ82_05435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LVJ82_05440 PF03618 Kinase/pyrophosphorylase LVJ82_05445 PF00149 Calcineurin-like phosphoesterase LVJ82_05470 PF05163 DinB family LVJ82_05480 PF00892 EamA-like transporter family LVJ82_05485 PF04977 Septum formation initiator LVJ82_05490 PF03952 Enolase, N-terminal domain LVJ82_05490 PF00113 Enolase, C-terminal TIM barrel domain LVJ82_05515 PF07690 Major Facilitator Superfamily LVJ82_05525 PF00753 Metallo-beta-lactamase superfamily LVJ82_05535 PF01808 AICARFT/IMPCHase bienzyme LVJ82_05535 PF02142 MGS-like domain LVJ82_05540 PF02954 Bacterial regulatory protein, Fis family LVJ82_05545 PF01207 Dihydrouridine synthase (Dus) LVJ82_05550 PF02096 60Kd inner membrane protein LVJ82_05550 PF14849 YidC periplasmic domain LVJ82_05555 PF01809 Putative membrane protein insertion efficiency factor LVJ82_05560 PF00825 Ribonuclease P LVJ82_05565 PF00468 Ribosomal protein L34 LVJ82_05570 PF00308 Bacterial dnaA protein LVJ82_05570 PF08299 Bacterial dnaA protein helix-turn-helix LVJ82_05570 PF11638 DnaA N-terminal domain LVJ82_05575 PF00712 DNA polymerase III beta subunit, N-terminal domain LVJ82_05575 PF02768 DNA polymerase III beta subunit, C-terminal domain LVJ82_05575 PF02767 DNA polymerase III beta subunit, central domain LVJ82_05580 PF01751 Toprim domain LVJ82_05580 PF00204 DNA gyrase B LVJ82_05580 PF00986 DNA gyrase B subunit, carboxyl terminus LVJ82_05580 PF18053 DNA gyrase B subunit insert domain LVJ82_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_05585 PF02667 Short chain fatty acid transporter LVJ82_05590 PF00149 Calcineurin-like phosphoesterase LVJ82_05590 PF12320 Type 5 capsule protein repressor C-terminal domain LVJ82_05595 PF13476 AAA domain LVJ82_05600 PF01545 Cation efflux family LVJ82_05600 PF16916 Dimerisation domain of Zinc Transporter LVJ82_05605 PF03692 Putative zinc- or iron-chelating domain LVJ82_05610 PF00403 Heavy-metal-associated domain LVJ82_05630 PF02492 CobW/HypB/UreG, nucleotide-binding domain LVJ82_05630 PF07683 Cobalamin synthesis protein cobW C-terminal domain LVJ82_05635 PF01475 Ferric uptake regulator family LVJ82_05645 PF00202 Aminotransferase class-III LVJ82_05680 PF01223 DNA/RNA non-specific endonuclease LVJ82_05695 PF09992 Phosphodiester glycosidase LVJ82_05705 PF06827 Zinc finger found in FPG and IleRS LVJ82_05705 PF08264 Anticodon-binding domain of tRNA LVJ82_05705 PF00133 tRNA synthetases class I (I, L, M and V) LVJ82_05710 PF06574 FAD synthetase LVJ82_05710 PF01687 Riboflavin kinase LVJ82_05715 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_05720 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LVJ82_05730 PF13416 Bacterial extracellular solute-binding protein LVJ82_05740 PF00005 ABC transporter LVJ82_05740 PF12848 ABC transporter LVJ82_05760 PF14480 DNA polymerase III polC-type N-terminus I LVJ82_05760 PF11490 DNA polymerase III polC-type N-terminus II LVJ82_05760 PF07733 Bacterial DNA polymerase III alpha NTPase domain LVJ82_05760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LVJ82_05760 PF14579 Helix-hairpin-helix motif LVJ82_05760 PF02811 PHP domain LVJ82_05760 PF00929 Exonuclease LVJ82_05765 PF01435 Peptidase family M48 LVJ82_05770 PF00171 Aldehyde dehydrogenase family LVJ82_05785 PF03976 Polyphosphate kinase 2 (PPK2) LVJ82_05790 PF00551 Formyl transferase LVJ82_05800 PF01189 16S rRNA methyltransferase RsmB/F LVJ82_05800 PF01029 NusB family LVJ82_05805 PF00462 Glutaredoxin LVJ82_05825 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_05825 PF07724 AAA domain (Cdc48 subfamily) LVJ82_05825 PF17871 AAA lid domain LVJ82_05825 PF02861 Clp amino terminal domain, pathogenicity island component LVJ82_05825 PF10431 C-terminal, D2-small domain, of ClpB protein LVJ82_05830 PF02617 ATP-dependent Clp protease adaptor protein ClpS LVJ82_05835 PF00313 'Cold-shock' DNA-binding domain LVJ82_05850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LVJ82_05850 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LVJ82_05855 PF02899 Phage integrase, N-terminal SAM-like domain LVJ82_05855 PF00589 Phage integrase family LVJ82_05860 PF11798 IMS family HHH motif LVJ82_05860 PF00817 impB/mucB/samB family LVJ82_05860 PF11799 impB/mucB/samB family C-terminal domain LVJ82_05870 PF04463 Protein of unknown function (DUF523) LVJ82_05880 PF04127 DNA / pantothenate metabolism flavoprotein LVJ82_05880 PF02441 Flavoprotein LVJ82_05900 PF07963 Prokaryotic N-terminal methylation motif LVJ82_05900 PF00114 Pilin (bacterial filament) LVJ82_05905 PF00692 dUTPase LVJ82_05915 PF13193 AMP-binding enzyme C-terminal domain LVJ82_05915 PF00501 AMP-binding enzyme LVJ82_05920 PF07690 Major Facilitator Superfamily LVJ82_05945 PF13460 NAD(P)H-binding LVJ82_05950 PF02082 Transcriptional regulator LVJ82_05955 PF00271 Helicase conserved C-terminal domain LVJ82_05955 PF04851 Type III restriction enzyme, res subunit LVJ82_05955 PF02151 UvrB/uvrC motif LVJ82_05955 PF12344 Ultra-violet resistance protein B LVJ82_05955 PF17757 UvrB interaction domain LVJ82_05995 PF13186 Iron-sulfur cluster-binding domain LVJ82_05995 PF04055 Radical SAM superfamily LVJ82_06005 PF06906 Protein of unknown function (DUF1272) LVJ82_06010 PF00171 Aldehyde dehydrogenase family LVJ82_06020 PF12833 Helix-turn-helix domain LVJ82_06025 PF07690 Major Facilitator Superfamily LVJ82_06030 PF12146 Serine aminopeptidase, S33 LVJ82_06035 PF02803 Thiolase, C-terminal domain LVJ82_06035 PF00108 Thiolase, N-terminal domain LVJ82_06040 PF01144 Coenzyme A transferase LVJ82_06045 PF01144 Coenzyme A transferase LVJ82_06050 PF03594 Benzoate membrane transport protein LVJ82_06055 PF00106 short chain dehydrogenase LVJ82_06060 PF00970 Oxidoreductase FAD-binding domain LVJ82_06060 PF00175 Oxidoreductase NAD-binding domain LVJ82_06060 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_06065 PF00866 Ring hydroxylating beta subunit LVJ82_06070 PF00355 Rieske [2Fe-2S] domain LVJ82_06070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LVJ82_06075 PF00775 Dioxygenase LVJ82_06075 PF04444 Catechol dioxygenase N terminus LVJ82_06080 PF02426 Muconolactone delta-isomerase LVJ82_06085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LVJ82_06085 PF13378 Enolase C-terminal domain-like LVJ82_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_06090 PF03466 LysR substrate binding domain LVJ82_06115 PF03449 Transcription elongation factor, N-terminal LVJ82_06115 PF01272 Transcription elongation factor, GreA/GreB, C-term LVJ82_06120 PF13538 UvrD-like helicase C-terminal domain LVJ82_06125 PF00005 ABC transporter LVJ82_06130 PF02687 FtsX-like permease family LVJ82_06130 PF12704 MacB-like periplasmic core domain LVJ82_06135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LVJ82_06145 PF01171 PP-loop family LVJ82_06210 PF00072 Response regulator receiver domain LVJ82_06210 PF00486 Transcriptional regulatory protein, C terminal LVJ82_06215 PF00672 HAMP domain LVJ82_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_06215 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_06220 PF06123 Inner membrane protein CreD LVJ82_06225 PF16363 GDP-mannose 4,6 dehydratase LVJ82_06230 PF01430 Hsp33 protein LVJ82_06235 PF13230 Glutamine amidotransferases class-II LVJ82_06245 PF03477 ATP cone domain LVJ82_06255 PF01872 RibD C-terminal domain LVJ82_06255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LVJ82_06260 PF16363 GDP-mannose 4,6 dehydratase LVJ82_06265 PF00483 Nucleotidyl transferase LVJ82_06270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LVJ82_06275 PF04321 RmlD substrate binding domain LVJ82_06280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LVJ82_06280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LVJ82_06280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LVJ82_06285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LVJ82_06285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LVJ82_06290 PF01266 FAD dependent oxidoreductase LVJ82_06290 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LVJ82_06295 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_06300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LVJ82_06325 PF02350 UDP-N-acetylglucosamine 2-epimerase LVJ82_06340 PF02397 Bacterial sugar transferase LVJ82_06350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LVJ82_06355 PF02719 Polysaccharide biosynthesis protein LVJ82_06360 PF00709 Adenylosuccinate synthetase LVJ82_06365 PF13393 Histidyl-tRNA synthetase LVJ82_06370 PF02673 Bacitracin resistance protein BacA LVJ82_06375 PF01323 DSBA-like thioredoxin domain LVJ82_06375 PF00085 Thioredoxin LVJ82_06385 PF01078 Magnesium chelatase, subunit ChlI LVJ82_06385 PF13335 Magnesium chelatase, subunit ChlI C-terminal LVJ82_06390 PF04380 Membrane fusogenic activity LVJ82_06400 PF00293 NUDIX domain LVJ82_06405 PF01648 4'-phosphopantetheinyl transferase superfamily LVJ82_06410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LVJ82_06415 PF02565 Recombination protein O C terminal LVJ82_06415 PF11967 Recombination protein O N terminal LVJ82_06425 PF01613 Flavin reductase like domain LVJ82_06430 PF01546 Peptidase family M20/M25/M40 LVJ82_06430 PF07687 Peptidase dimerisation domain LVJ82_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_06435 PF03466 LysR substrate binding domain LVJ82_06460 PF00850 Histone deacetylase domain LVJ82_06465 PF00171 Aldehyde dehydrogenase family LVJ82_06470 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LVJ82_06475 PF00202 Aminotransferase class-III LVJ82_06490 PF00171 Aldehyde dehydrogenase family LVJ82_06495 PF00202 Aminotransferase class-III LVJ82_06500 PF00117 Glutamine amidotransferase class-I LVJ82_06500 PF00958 GMP synthase C terminal domain LVJ82_06500 PF02540 NAD synthase LVJ82_06505 PF00108 Thiolase, N-terminal domain LVJ82_06505 PF02803 Thiolase, C-terminal domain LVJ82_06515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LVJ82_06520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LVJ82_06520 PF02770 Acyl-CoA dehydrogenase, middle domain LVJ82_06520 PF09317 Domain of unknown function (DUF1974) LVJ82_06520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LVJ82_06525 PF00440 Bacterial regulatory proteins, tetR family LVJ82_06535 PF08240 Alcohol dehydrogenase GroES-like domain LVJ82_06535 PF00107 Zinc-binding dehydrogenase LVJ82_06540 PF05962 HutD LVJ82_06545 PF00682 HMGL-like LVJ82_06545 PF08502 LeuA allosteric (dimerisation) domain LVJ82_06550 PF05175 Methyltransferase small domain LVJ82_06555 PF00266 Aminotransferase class-V LVJ82_06565 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LVJ82_06565 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LVJ82_06600 PF00582 Universal stress protein family LVJ82_06615 PF02899 Phage integrase, N-terminal SAM-like domain LVJ82_06615 PF00589 Phage integrase family LVJ82_06620 PF01180 Dihydroorotate dehydrogenase LVJ82_06625 PF13726 Na+-H+ antiporter family LVJ82_06625 PF03553 Na+/H+ antiporter family LVJ82_06635 PF04284 Protein of unknown function (DUF441) LVJ82_06640 PF00226 DnaJ domain LVJ82_06640 PF01556 DnaJ C terminal domain LVJ82_06660 PF01351 Ribonuclease HII LVJ82_06665 PF02684 Lipid-A-disaccharide synthetase LVJ82_06670 PF00293 NUDIX domain LVJ82_06690 PF08240 Alcohol dehydrogenase GroES-like domain LVJ82_06690 PF00107 Zinc-binding dehydrogenase LVJ82_06695 PF01638 HxlR-like helix-turn-helix LVJ82_06710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LVJ82_06710 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_06715 PF07977 FabA-like domain LVJ82_06720 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_06720 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LVJ82_06730 PF01103 Surface antigen LVJ82_06730 PF07244 Surface antigen variable number repeat LVJ82_06735 PF17820 PDZ domain LVJ82_06735 PF02163 Peptidase family M50 LVJ82_06740 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LVJ82_06740 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LVJ82_06740 PF13288 DXP reductoisomerase C-terminal domain LVJ82_06750 PF01255 Putative undecaprenyl diphosphate synthase LVJ82_06755 PF01765 Ribosome recycling factor LVJ82_06760 PF00696 Amino acid kinase family LVJ82_06765 PF00889 Elongation factor TS LVJ82_06770 PF00318 Ribosomal protein S2 LVJ82_06780 PF01812 5-formyltetrahydrofolate cyclo-ligase family LVJ82_06800 PF00152 tRNA synthetases class II (D, K and N) LVJ82_06800 PF01336 OB-fold nucleic acid binding domain LVJ82_06810 PF00849 RNA pseudouridylate synthase LVJ82_06835 PF01914 MarC family integral membrane protein LVJ82_06840 PF01432 Peptidase family M3 LVJ82_06850 PF02082 Transcriptional regulator LVJ82_06855 PF00175 Oxidoreductase NAD-binding domain LVJ82_06855 PF00970 Oxidoreductase FAD-binding domain LVJ82_06855 PF00042 Globin LVJ82_06870 PF14602 Hexapeptide repeat of succinyl-transferase LVJ82_06870 PF12804 MobA-like NTP transferase domain LVJ82_06870 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_06875 PF01380 SIS domain LVJ82_06880 PF07690 Major Facilitator Superfamily LVJ82_06880 PF00083 Sugar (and other) transporter LVJ82_06885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LVJ82_06895 PF01494 FAD binding domain LVJ82_06910 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_06915 PF00005 ABC transporter LVJ82_06915 PF09383 NIL domain LVJ82_06925 PF03180 NLPA lipoprotein LVJ82_06930 PF01053 Cys/Met metabolism PLP-dependent enzyme LVJ82_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_06945 PF03466 LysR substrate binding domain LVJ82_06950 PF03788 LrgA family LVJ82_06955 PF04172 LrgB-like family LVJ82_06960 PF06956 Regulator of RNA terminal phosphate cyclase LVJ82_06960 PF00158 Sigma-54 interaction domain LVJ82_06975 PF01139 tRNA-splicing ligase RtcB LVJ82_06985 PF03992 Antibiotic biosynthesis monooxygenase LVJ82_06990 PF02525 Flavodoxin-like fold LVJ82_07020 PF12111 Polyribonucleotide phosphorylase C terminal LVJ82_07020 PF10150 Ribonuclease E/G family LVJ82_07020 PF00575 S1 RNA binding domain LVJ82_07025 PF00849 RNA pseudouridylate synthase LVJ82_07025 PF01479 S4 domain LVJ82_07030 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_07035 PF01343 Peptidase family S49 LVJ82_07035 PF06965 Na+/H+ antiporter 1 LVJ82_07040 PF03788 LrgA family LVJ82_07045 PF04172 LrgB-like family LVJ82_07055 PF00749 tRNA synthetases class I (E and Q), catalytic domain LVJ82_07060 PF00814 Glycoprotease family LVJ82_07075 PF04386 Stringent starvation protein B LVJ82_07080 PF00043 Glutathione S-transferase, C-terminal domain LVJ82_07080 PF02798 Glutathione S-transferase, N-terminal domain LVJ82_07090 PF02167 Cytochrome C1 family LVJ82_07095 PF00033 Cytochrome b/b6/petB LVJ82_07095 PF00032 Cytochrome b(C-terminal)/b6/petD LVJ82_07100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LVJ82_07100 PF00355 Rieske [2Fe-2S] domain LVJ82_07105 PF01784 NIF3 (NGG1p interacting factor 3) LVJ82_07110 PF00118 TCP-1/cpn60 chaperonin family LVJ82_07120 PF00166 Chaperonin 10 Kd subunit LVJ82_07125 PF00311 Phosphoenolpyruvate carboxylase LVJ82_07145 PF02675 S-adenosylmethionine decarboxylase LVJ82_07160 PF03994 Domain of Unknown Function (DUF350) LVJ82_07185 PF00578 AhpC/TSA family LVJ82_07220 PF06672 Protein of unknown function (DUF1175) LVJ82_07225 PF00207 Alpha-2-macroglobulin family LVJ82_07225 PF01835 MG2 domain LVJ82_07225 PF07703 Alpha-2-macroglobulin bait region domain LVJ82_07230 PF10062 Predicted secreted protein (DUF2300) LVJ82_07230 PF08486 Stage II sporulation protein LVJ82_07235 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) LVJ82_07270 PF00893 Small Multidrug Resistance protein LVJ82_07275 PF07690 Major Facilitator Superfamily LVJ82_07285 PF00892 EamA-like transporter family LVJ82_07290 PF01037 Lrp/AsnC ligand binding domain LVJ82_07305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LVJ82_07305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LVJ82_07305 PF02142 MGS-like domain LVJ82_07310 PF01810 LysE type translocator LVJ82_07315 PF02567 Phenazine biosynthesis-like protein LVJ82_07320 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LVJ82_07320 PF00117 Glutamine amidotransferase class-I LVJ82_07325 PF05567 Neisseria PilC beta-propeller domain LVJ82_07360 PF01578 Cytochrome C assembly protein LVJ82_07365 PF00448 SRP54-type protein, GTPase domain LVJ82_07365 PF02881 SRP54-type protein, helical bundle domain LVJ82_07365 PF02978 Signal peptide binding domain LVJ82_07370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LVJ82_07370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LVJ82_07380 PF01491 Frataxin-like domain LVJ82_07385 PF01661 Macro domain LVJ82_07405 PF07670 Nucleoside recognition LVJ82_07410 PF02308 MgtC family LVJ82_07415 PF00155 Aminotransferase class I and II LVJ82_07420 PF00324 Amino acid permease LVJ82_07425 PF00005 ABC transporter LVJ82_07430 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_07435 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_07440 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_07445 PF04055 Radical SAM superfamily LVJ82_07445 PF01938 TRAM domain LVJ82_07445 PF00919 Uncharacterized protein family UPF0004 LVJ82_07455 PF01196 Ribosomal protein L17 LVJ82_07460 PF01000 RNA polymerase Rpb3/RpoA insert domain LVJ82_07460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LVJ82_07460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LVJ82_07465 PF00163 Ribosomal protein S4/S9 N-terminal domain LVJ82_07465 PF01479 S4 domain LVJ82_07470 PF00411 Ribosomal protein S11 LVJ82_07475 PF00416 Ribosomal protein S13/S18 LVJ82_07480 PF00444 Ribosomal protein L36 LVJ82_07485 PF01176 Translation initiation factor 1A / IF-1 LVJ82_07490 PF00344 SecY translocase LVJ82_07495 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LVJ82_07500 PF00327 Ribosomal protein L30p/L7e LVJ82_07505 PF00333 Ribosomal protein S5, N-terminal domain LVJ82_07505 PF03719 Ribosomal protein S5, C-terminal domain LVJ82_07510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LVJ82_07515 PF00347 Ribosomal protein L6 LVJ82_07520 PF00410 Ribosomal protein S8 LVJ82_07525 PF00253 Ribosomal protein S14p/S29e LVJ82_07530 PF00281 Ribosomal protein L5 LVJ82_07530 PF00673 ribosomal L5P family C-terminus LVJ82_07535 PF00467 KOW motif LVJ82_07535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LVJ82_07540 PF00238 Ribosomal protein L14p/L23e LVJ82_07545 PF00366 Ribosomal protein S17 LVJ82_07550 PF00831 Ribosomal L29 protein LVJ82_07555 PF00252 Ribosomal protein L16p/L10e LVJ82_07560 PF07650 KH domain LVJ82_07560 PF00189 Ribosomal protein S3, C-terminal domain LVJ82_07565 PF00237 Ribosomal protein L22p/L17e LVJ82_07570 PF00203 Ribosomal protein S19 LVJ82_07575 PF03947 Ribosomal Proteins L2, C-terminal domain LVJ82_07575 PF00181 Ribosomal Proteins L2, RNA binding domain LVJ82_07580 PF00276 Ribosomal protein L23 LVJ82_07585 PF00573 Ribosomal protein L4/L1 family LVJ82_07590 PF00297 Ribosomal protein L3 LVJ82_07595 PF00338 Ribosomal protein S10p/S20e LVJ82_07600 PF03143 Elongation factor Tu C-terminal domain LVJ82_07600 PF00009 Elongation factor Tu GTP binding domain LVJ82_07600 PF03144 Elongation factor Tu domain 2 LVJ82_07605 PF00679 Elongation factor G C-terminus LVJ82_07605 PF14492 Elongation Factor G, domain II LVJ82_07605 PF03764 Elongation factor G, domain IV LVJ82_07605 PF00009 Elongation factor Tu GTP binding domain LVJ82_07605 PF03144 Elongation factor Tu domain 2 LVJ82_07610 PF00177 Ribosomal protein S7p/S5e LVJ82_07615 PF00164 Ribosomal protein S12/S23 LVJ82_07625 PF00623 RNA polymerase Rpb1, domain 2 LVJ82_07625 PF04983 RNA polymerase Rpb1, domain 3 LVJ82_07625 PF05000 RNA polymerase Rpb1, domain 4 LVJ82_07625 PF04998 RNA polymerase Rpb1, domain 5 LVJ82_07625 PF04997 RNA polymerase Rpb1, domain 1 LVJ82_07630 PF04563 RNA polymerase beta subunit LVJ82_07630 PF04561 RNA polymerase Rpb2, domain 2 LVJ82_07630 PF04565 RNA polymerase Rpb2, domain 3 LVJ82_07630 PF10385 RNA polymerase beta subunit external 1 domain LVJ82_07630 PF00562 RNA polymerase Rpb2, domain 6 LVJ82_07630 PF04560 RNA polymerase Rpb2, domain 7 LVJ82_07635 PF00542 Ribosomal protein L7/L12 C-terminal domain LVJ82_07635 PF16320 Ribosomal protein L7/L12 dimerisation domain LVJ82_07640 PF00466 Ribosomal protein L10 LVJ82_07645 PF00687 Ribosomal protein L1p/L10e family LVJ82_07650 PF03946 Ribosomal protein L11, N-terminal domain LVJ82_07650 PF00298 Ribosomal protein L11, RNA binding domain LVJ82_07655 PF00467 KOW motif LVJ82_07655 PF02357 Transcription termination factor nusG LVJ82_07670 PF03144 Elongation factor Tu domain 2 LVJ82_07670 PF03143 Elongation factor Tu C-terminal domain LVJ82_07670 PF00009 Elongation factor Tu GTP binding domain LVJ82_07690 PF00037 4Fe-4S binding domain LVJ82_07700 PF02954 Bacterial regulatory protein, Fis family LVJ82_07700 PF00072 Response regulator receiver domain LVJ82_07700 PF00158 Sigma-54 interaction domain LVJ82_07705 PF00672 HAMP domain LVJ82_07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_07705 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_07705 PF00989 PAS fold LVJ82_07715 PF01189 16S rRNA methyltransferase RsmB/F LVJ82_07715 PF01029 NusB family LVJ82_07720 PF00551 Formyl transferase LVJ82_07720 PF02911 Formyl transferase, C-terminal domain LVJ82_07725 PF01327 Polypeptide deformylase LVJ82_07730 PF05257 CHAP domain LVJ82_07730 PF01476 LysM domain LVJ82_07735 PF17782 DprA winged helix domain LVJ82_07735 PF02481 DNA recombination-mediator protein A LVJ82_07740 PF04361 Protein of unknown function (DUF494) LVJ82_07745 PF01131 DNA topoisomerase LVJ82_07745 PF01751 Toprim domain LVJ82_07745 PF13368 Topoisomerase C-terminal repeat LVJ82_07750 PF05025 RbsD / FucU transport protein family LVJ82_07755 PF00005 ABC transporter LVJ82_07760 PF02653 Branched-chain amino acid transport system / permease component LVJ82_07765 PF13407 Periplasmic binding protein domain LVJ82_07785 PF01472 PUA domain LVJ82_07785 PF00696 Amino acid kinase family LVJ82_07790 PF00486 Transcriptional regulatory protein, C terminal LVJ82_07790 PF00072 Response regulator receiver domain LVJ82_07795 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_07795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_07795 PF11808 Phosphate regulon sensor protein PhoR LVJ82_07795 PF00989 PAS fold LVJ82_07800 PF01575 MaoC like domain LVJ82_07810 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LVJ82_07810 PF02779 Transketolase, pyrimidine binding domain LVJ82_07810 PF02780 Transketolase, C-terminal domain LVJ82_07815 PF02590 Predicted SPOUT methyltransferase LVJ82_07845 PF01467 Cytidylyltransferase-like LVJ82_07850 PF00484 Carbonic anhydrase LVJ82_07860 PF13533 Biotin-lipoyl like LVJ82_07875 PF01627 Hpt domain LVJ82_07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_07875 PF01584 CheW-like domain LVJ82_07875 PF00072 Response regulator receiver domain LVJ82_07880 PF00072 Response regulator receiver domain LVJ82_07900 PF17674 HHH domain LVJ82_07900 PF00575 S1 RNA binding domain LVJ82_07900 PF09371 Tex-like protein N-terminal domain LVJ82_07900 PF16921 Tex protein YqgF-like domain LVJ82_07920 PF01551 Peptidase family M23 LVJ82_07920 PF01476 LysM domain LVJ82_07920 PF08525 Opacity-associated protein A N-terminal motif LVJ82_07930 PF17768 RecJ OB domain LVJ82_07930 PF02272 DHHA1 domain LVJ82_07930 PF01368 DHH family LVJ82_07935 PF01810 LysE type translocator LVJ82_07940 PF03544 Gram-negative bacterial TonB protein C-terminal LVJ82_07945 PF01618 MotA/TolQ/ExbB proton channel family LVJ82_07950 PF02472 Biopolymer transport protein ExbD/TolR LVJ82_07960 PF02580 D-Tyr-tRNA(Tyr) deacylase LVJ82_07970 PF00156 Phosphoribosyl transferase domain LVJ82_07990 PF01256 Carbohydrate kinase LVJ82_07990 PF03853 YjeF-related protein N-terminus LVJ82_08005 PF01738 Dienelactone hydrolase family LVJ82_08015 PF03466 LysR substrate binding domain LVJ82_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_08060 PF02347 Glycine cleavage system P-protein LVJ82_08065 PF07690 Major Facilitator Superfamily LVJ82_08080 PF05360 yiaA/B two helix domain LVJ82_08085 PF01597 Glycine cleavage H-protein LVJ82_08090 PF01571 Aminomethyltransferase folate-binding domain LVJ82_08090 PF08669 Glycine cleavage T-protein C-terminal barrel domain LVJ82_08095 PF01037 Lrp/AsnC ligand binding domain LVJ82_08105 PF04304 Protein of unknown function (DUF454) LVJ82_08110 PF01842 ACT domain LVJ82_08110 PF00551 Formyl transferase LVJ82_08125 PF02219 Methylenetetrahydrofolate reductase LVJ82_08135 PF00381 PTS HPr component phosphorylation site LVJ82_08140 PF05524 PEP-utilising enzyme, N-terminal LVJ82_08140 PF00391 PEP-utilising enzyme, mobile domain LVJ82_08140 PF02896 PEP-utilising enzyme, TIM barrel domain LVJ82_08155 PF13580 SIS domain LVJ82_08160 PF02021 Uncharacterised protein family UPF0102 LVJ82_08165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LVJ82_08185 PF13185 GAF domain LVJ82_08190 PF01070 FMN-dependent dehydrogenase LVJ82_08195 PF13640 2OG-Fe(II) oxygenase superfamily LVJ82_08195 PF18331 PKHD-type hydroxylase C-terminal domain LVJ82_08200 PF07715 TonB-dependent Receptor Plug Domain LVJ82_08200 PF00593 TonB dependent receptor LVJ82_08205 PF01476 LysM domain LVJ82_08205 PF01551 Peptidase family M23 LVJ82_08215 PF00583 Acetyltransferase (GNAT) family LVJ82_08235 PF07733 Bacterial DNA polymerase III alpha NTPase domain LVJ82_08235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LVJ82_08235 PF14579 Helix-hairpin-helix motif LVJ82_08235 PF02811 PHP domain LVJ82_08235 PF01336 OB-fold nucleic acid binding domain LVJ82_08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_08250 PF03466 LysR substrate binding domain LVJ82_08255 PF03776 Septum formation topological specificity factor MinE LVJ82_08260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LVJ82_08265 PF03775 Septum formation inhibitor MinC, C-terminal domain LVJ82_08265 PF05209 Septum formation inhibitor MinC, N-terminal domain LVJ82_08270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LVJ82_08275 PF04357 TamB, inner membrane protein subunit of TAM complex LVJ82_08290 PF00294 pfkB family carbohydrate kinase LVJ82_08295 PF10609 NUBPL iron-transfer P-loop NTPase LVJ82_08300 PF07152 YaeQ protein LVJ82_08310 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LVJ82_08320 PF05036 Sporulation related domain LVJ82_08320 PF03330 Lytic transglycolase LVJ82_08325 PF00156 Phosphoribosyl transferase domain LVJ82_08335 PF00561 alpha/beta hydrolase fold LVJ82_08340 PF08241 Methyltransferase domain LVJ82_08345 PF01734 Patatin-like phospholipase LVJ82_08360 PF02798 Glutathione S-transferase, N-terminal domain LVJ82_08370 PF17810 Arginine decarboxylase helical bundle domain LVJ82_08370 PF17944 Arginine decarboxylase C-terminal helical extension LVJ82_08370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LVJ82_08390 PF01212 Beta-eliminating lyase LVJ82_08395 PF03150 Di-haem cytochrome c peroxidase LVJ82_08395 PF00034 Cytochrome c LVJ82_08400 PF07715 TonB-dependent Receptor Plug Domain LVJ82_08415 PF06733 DEAD_2 LVJ82_08415 PF13307 Helicase C-terminal domain LVJ82_08430 PF13458 Periplasmic binding protein LVJ82_08445 PF00155 Aminotransferase class I and II LVJ82_08445 PF00392 Bacterial regulatory proteins, gntR family LVJ82_08455 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_08455 PF07724 AAA domain (Cdc48 subfamily) LVJ82_08465 PF00227 Proteasome subunit LVJ82_08475 PF05188 MutS domain II LVJ82_08475 PF01624 MutS domain I LVJ82_08475 PF05192 MutS domain III LVJ82_08475 PF00488 MutS domain V LVJ82_08475 PF05190 MutS family domain IV LVJ82_08480 PF14052 Capsule assembly protein Wzi LVJ82_08495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LVJ82_08495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LVJ82_08500 PF00202 Aminotransferase class-III LVJ82_08510 PF03653 Uncharacterised protein family (UPF0093) LVJ82_08545 PF02163 Peptidase family M50 LVJ82_08550 PF01300 Telomere recombination LVJ82_08560 PF02811 PHP domain LVJ82_08580 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LVJ82_08585 PF00962 Adenosine/AMP deaminase LVJ82_08595 PF00881 Nitroreductase family LVJ82_08620 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LVJ82_08620 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LVJ82_08625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LVJ82_08625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LVJ82_08635 PF02075 Crossover junction endodeoxyribonuclease RuvC LVJ82_08640 PF07499 RuvA, C-terminal domain LVJ82_08640 PF01330 RuvA N terminal domain LVJ82_08645 PF05532 CsbD-like LVJ82_08650 PF00106 short chain dehydrogenase LVJ82_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_08655 PF03466 LysR substrate binding domain LVJ82_08660 PF07681 DoxX LVJ82_08665 PF00664 ABC transporter transmembrane region LVJ82_08665 PF00005 ABC transporter LVJ82_08675 PF01926 50S ribosome-binding GTPase LVJ82_08675 PF12631 MnmE helical domain LVJ82_08675 PF10396 GTP-binding protein TrmE N-terminus LVJ82_08685 PF13505 Outer membrane protein beta-barrel domain LVJ82_08690 PF13673 Acetyltransferase (GNAT) domain LVJ82_08705 PF01048 Phosphorylase superfamily LVJ82_08710 PF00155 Aminotransferase class I and II LVJ82_08715 PF14542 GCN5-related N-acetyl-transferase LVJ82_08760 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_08780 PF02574 Homocysteine S-methyltransferase LVJ82_08780 PF02310 B12 binding domain LVJ82_08780 PF02607 B12 binding domain LVJ82_08780 PF02965 Vitamin B12 dependent methionine synthase, activation domain LVJ82_08780 PF00809 Pterin binding enzyme LVJ82_08795 PF00248 Aldo/keto reductase family LVJ82_08800 PF04397 LytTr DNA-binding domain LVJ82_08800 PF00072 Response regulator receiver domain LVJ82_08805 PF01258 Prokaryotic dksA/traR C4-type zinc finger LVJ82_08815 PF03807 NADP oxidoreductase coenzyme F420-dependent LVJ82_08815 PF14748 Pyrroline-5-carboxylate reductase dimerisation LVJ82_08820 PF01168 Alanine racemase, N-terminal domain LVJ82_08825 PF00437 Type II/IV secretion system protein LVJ82_08830 PF00437 Type II/IV secretion system protein LVJ82_08835 PF00892 EamA-like transporter family LVJ82_08850 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_08855 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_08865 PF13361 UvrD-like helicase C-terminal domain LVJ82_08865 PF00580 UvrD/REP helicase N-terminal domain LVJ82_08875 PF01546 Peptidase family M20/M25/M40 LVJ82_08875 PF07687 Peptidase dimerisation domain LVJ82_08880 PF00881 Nitroreductase family LVJ82_08890 PF01169 Uncharacterized protein family UPF0016 LVJ82_08905 PF01300 Telomere recombination LVJ82_08910 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LVJ82_08910 PF02843 Phosphoribosylglycinamide synthetase, C domain LVJ82_08910 PF02844 Phosphoribosylglycinamide synthetase, N domain LVJ82_08920 PF09186 Domain of unknown function (DUF1949) LVJ82_08920 PF01205 Uncharacterized protein family UPF0029 LVJ82_08925 PF00588 SpoU rRNA Methylase family LVJ82_08930 PF01012 Electron transfer flavoprotein domain LVJ82_08930 PF00766 Electron transfer flavoprotein FAD-binding domain LVJ82_08935 PF01012 Electron transfer flavoprotein domain LVJ82_08940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LVJ82_08945 PF18389 TrmO C-terminal domain LVJ82_08945 PF01980 tRNA-methyltransferase O LVJ82_08950 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LVJ82_08955 PF07478 D-ala D-ala ligase C-terminus LVJ82_08955 PF01820 D-ala D-ala ligase N-terminus LVJ82_08960 PF00459 Inositol monophosphatase family LVJ82_08965 PF04452 RNA methyltransferase LVJ82_08970 PF03006 Haemolysin-III related LVJ82_08975 PF01906 Putative heavy-metal-binding LVJ82_08995 PF00171 Aldehyde dehydrogenase family LVJ82_09005 PF00043 Glutathione S-transferase, C-terminal domain LVJ82_09005 PF13417 Glutathione S-transferase, N-terminal domain LVJ82_09015 PF03023 Lipid II flippase MurJ LVJ82_09025 PF18075 FtsX extracellular domain LVJ82_09030 PF00005 ABC transporter LVJ82_09040 PF02881 SRP54-type protein, helical bundle domain LVJ82_09040 PF00448 SRP54-type protein, GTPase domain LVJ82_09045 PF05193 Peptidase M16 inactive domain LVJ82_09045 PF00675 Insulinase (Peptidase family M16) LVJ82_09065 PF00072 Response regulator receiver domain LVJ82_09075 PF01654 Cytochrome bd terminal oxidase subunit I LVJ82_09080 PF02322 Cytochrome bd terminal oxidase subunit II LVJ82_09105 PF13302 Acetyltransferase (GNAT) domain LVJ82_09110 PF00583 Acetyltransferase (GNAT) family LVJ82_09175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LVJ82_09175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LVJ82_09185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LVJ82_09200 PF00483 Nucleotidyl transferase LVJ82_09205 PF00793 DAHP synthetase I family LVJ82_09210 PF00765 Autoinducer synthase LVJ82_09245 PF01047 MarR family LVJ82_09250 PF00892 EamA-like transporter family LVJ82_09255 PF00881 Nitroreductase family LVJ82_09285 PF00691 OmpA family LVJ82_09285 PF00223 Photosystem I psaA/psaB protein LVJ82_09295 PF14489 QueF-like protein LVJ82_09310 PF00773 RNB domain LVJ82_09310 PF08206 Ribonuclease B OB domain LVJ82_09315 PF03471 Transporter associated domain LVJ82_09315 PF03741 Integral membrane protein TerC family LVJ82_09320 PF00072 Response regulator receiver domain LVJ82_09320 PF00486 Transcriptional regulatory protein, C terminal LVJ82_09325 PF13492 GAF domain LVJ82_09325 PF13493 Domain of unknown function (DUF4118) LVJ82_09325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_09325 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_09325 PF02702 Osmosensitive K+ channel His kinase sensor domain LVJ82_09330 PF02669 K+-transporting ATPase, c chain LVJ82_09340 PF03814 Potassium-transporting ATPase A subunit LVJ82_09360 PF09339 IclR helix-turn-helix domain LVJ82_09360 PF01614 Bacterial transcriptional regulator LVJ82_09370 PF01494 FAD binding domain LVJ82_09385 PF08240 Alcohol dehydrogenase GroES-like domain LVJ82_09385 PF00107 Zinc-binding dehydrogenase LVJ82_09395 PF00106 short chain dehydrogenase LVJ82_09400 PF07411 Domain of unknown function (DUF1508) LVJ82_09405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LVJ82_09405 PF12833 Helix-turn-helix domain LVJ82_09410 PF03551 Transcriptional regulator PadR-like family LVJ82_09410 PF13847 Methyltransferase domain LVJ82_09430 PF00348 Polyprenyl synthetase LVJ82_09435 PF02609 Exonuclease VII small subunit LVJ82_09440 PF08328 Adenylosuccinate lyase C-terminal LVJ82_09440 PF00206 Lyase LVJ82_09445 PF00535 Glycosyl transferase family 2 LVJ82_09475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LVJ82_09475 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_09480 PF13411 MerR HTH family regulatory protein LVJ82_09495 PF05726 Pirin C-terminal cupin domain LVJ82_09495 PF02678 Pirin LVJ82_09500 PF05979 Bacterial protein of unknown function (DUF896) LVJ82_09505 PF01638 HxlR-like helix-turn-helix LVJ82_09510 PF01177 Asp/Glu/Hydantoin racemase LVJ82_09515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_09515 PF03466 LysR substrate binding domain LVJ82_09525 PF01497 Periplasmic binding protein LVJ82_09540 PF01634 ATP phosphoribosyltransferase LVJ82_09550 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_09555 PF02630 SCO1/SenC LVJ82_09560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LVJ82_09570 PF01061 ABC-2 type transporter LVJ82_09575 PF00005 ABC transporter LVJ82_09580 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_09585 PF00860 Permease family LVJ82_09600 PF05378 Hydantoinase/oxoprolinase N-terminal region LVJ82_09600 PF01968 Hydantoinase/oxoprolinase LVJ82_09625 PF01235 Sodium:alanine symporter family LVJ82_09630 PF13091 PLD-like domain LVJ82_09635 PF00171 Aldehyde dehydrogenase family LVJ82_09645 PF08264 Anticodon-binding domain of tRNA LVJ82_09645 PF01588 Putative tRNA binding domain LVJ82_09645 PF09334 tRNA synthetases class I (M) LVJ82_09650 PF01037 Lrp/AsnC ligand binding domain LVJ82_09655 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_09690 PF02470 MlaD protein LVJ82_09695 PF02405 Permease MlaE LVJ82_09700 PF00005 ABC transporter LVJ82_09705 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LVJ82_09710 PF00639 PPIC-type PPIASE domain LVJ82_09710 PF09312 SurA N-terminal domain LVJ82_09715 PF04453 LPS transport system D LVJ82_09720 PF01636 Phosphotransferase enzyme family LVJ82_09755 PF16168 Adhesin of bacterial autotransporter system, probable stalk LVJ82_09755 PF03797 Autotransporter beta-domain LVJ82_09755 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_09765 PF00196 Bacterial regulatory proteins, luxR family LVJ82_09765 PF00072 Response regulator receiver domain LVJ82_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_09770 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_09775 PF00034 Cytochrome c LVJ82_09775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LVJ82_09780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LVJ82_09785 PF00162 Phosphoglycerate kinase LVJ82_09790 PF00762 Ferrochelatase LVJ82_09795 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LVJ82_09795 PF17854 FtsK alpha domain LVJ82_09795 PF09397 Ftsk gamma domain LVJ82_09795 PF01580 FtsK/SpoIIIE family LVJ82_09800 PF03702 Anhydro-N-acetylmuramic acid kinase LVJ82_09830 PF01266 FAD dependent oxidoreductase LVJ82_09845 PF04191 Phospholipid methyltransferase LVJ82_09855 PF03466 LysR substrate binding domain LVJ82_09855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_09860 PF00857 Isochorismatase family LVJ82_09875 PF00815 Histidinol dehydrogenase LVJ82_09880 PF13977 BetI-type transcriptional repressor, C-terminal LVJ82_09880 PF00440 Bacterial regulatory proteins, tetR family LVJ82_09890 PF00023 Ankyrin repeat LVJ82_09890 PF12796 Ankyrin repeats (3 copies) LVJ82_09895 PF01757 Acyltransferase family LVJ82_09915 PF13439 Glycosyltransferase Family 4 LVJ82_09925 PF01116 Fructose-bisphosphate aldolase class-II LVJ82_09930 PF01047 MarR family LVJ82_09935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LVJ82_09945 PF04445 Putative SAM-dependent methyltransferase LVJ82_09955 PF17863 AAA lid domain LVJ82_09955 PF07726 ATPase family associated with various cellular activities (AAA) LVJ82_09980 PF02954 Bacterial regulatory protein, Fis family LVJ82_09980 PF00072 Response regulator receiver domain LVJ82_09980 PF00158 Sigma-54 interaction domain LVJ82_09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_09985 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_09990 PF00521 DNA gyrase/topoisomerase IV, subunit A LVJ82_09995 PF03741 Integral membrane protein TerC family LVJ82_10000 PF14525 AraC-binding-like domain LVJ82_10000 PF12833 Helix-turn-helix domain LVJ82_10005 PF01968 Hydantoinase/oxoprolinase LVJ82_10005 PF05378 Hydantoinase/oxoprolinase N-terminal region LVJ82_10010 PF02538 Hydantoinase B/oxoprolinase LVJ82_10015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LVJ82_10015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LVJ82_10015 PF02770 Acyl-CoA dehydrogenase, middle domain LVJ82_10015 PF12806 Acetyl-CoA dehydrogenase C-terminal like LVJ82_10020 PF01510 N-acetylmuramoyl-L-alanine amidase LVJ82_10030 PF12826 Helix-hairpin-helix motif LVJ82_10030 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LVJ82_10030 PF00533 BRCA1 C Terminus (BRCT) domain LVJ82_10030 PF01653 NAD-dependent DNA ligase adenylation domain LVJ82_10030 PF03120 NAD-dependent DNA ligase OB-fold domain LVJ82_10035 PF00483 Nucleotidyl transferase LVJ82_10040 PF00171 Aldehyde dehydrogenase family LVJ82_10045 PF00581 Rhodanese-like domain LVJ82_10045 PF17773 UPF0176 acylphosphatase like domain LVJ82_10055 PF01384 Phosphate transporter family LVJ82_10060 PF00005 ABC transporter LVJ82_10065 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_10070 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_10075 PF12849 PBP superfamily domain LVJ82_10080 PF00121 Triosephosphate isomerase LVJ82_10085 PF03840 Preprotein translocase SecG subunit LVJ82_10095 PF00589 Phage integrase family LVJ82_10095 PF13356 Arm DNA-binding domain LVJ82_10145 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LVJ82_10150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LVJ82_10155 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LVJ82_10160 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LVJ82_10170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LVJ82_10170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LVJ82_10170 PF10531 SLBB domain LVJ82_10175 PF00384 Molybdopterin oxidoreductase LVJ82_10175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LVJ82_10175 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LVJ82_10180 PF00146 NADH dehydrogenase LVJ82_10185 PF12838 4Fe-4S dicluster domain LVJ82_10190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LVJ82_10195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LVJ82_10200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LVJ82_10200 PF00361 Proton-conducting membrane transporter LVJ82_10205 PF00361 Proton-conducting membrane transporter LVJ82_10205 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LVJ82_10210 PF00361 Proton-conducting membrane transporter LVJ82_10230 PF03279 Bacterial lipid A biosynthesis acyltransferase LVJ82_10240 PF02773 S-adenosylmethionine synthetase, C-terminal domain LVJ82_10240 PF02772 S-adenosylmethionine synthetase, central domain LVJ82_10240 PF00438 S-adenosylmethionine synthetase, N-terminal domain LVJ82_10245 PF02773 S-adenosylmethionine synthetase, C-terminal domain LVJ82_10245 PF00438 S-adenosylmethionine synthetase, N-terminal domain LVJ82_10245 PF02772 S-adenosylmethionine synthetase, central domain LVJ82_10250 PF00083 Sugar (and other) transporter LVJ82_10250 PF07690 Major Facilitator Superfamily LVJ82_10275 PF00171 Aldehyde dehydrogenase family LVJ82_10285 PF01367 5'-3' exonuclease, C-terminal SAM fold LVJ82_10285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LVJ82_10285 PF00476 DNA polymerase family A LVJ82_10285 PF01612 3'-5' exonuclease LVJ82_10290 PF03641 Possible lysine decarboxylase LVJ82_10295 PF01494 FAD binding domain LVJ82_10315 PF00248 Aldo/keto reductase family LVJ82_10320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LVJ82_10325 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LVJ82_10330 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LVJ82_10335 PF04909 Amidohydrolase LVJ82_10340 PF03737 Aldolase/RraA LVJ82_10345 PF04909 Amidohydrolase LVJ82_10350 PF04303 PrpF protein LVJ82_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_10355 PF03466 LysR substrate binding domain LVJ82_10365 PF03573 outer membrane porin, OprD family LVJ82_10370 PF01220 Dehydroquinase class II LVJ82_10375 PF09339 IclR helix-turn-helix domain LVJ82_10375 PF01614 Bacterial transcriptional regulator LVJ82_10385 PF07690 Major Facilitator Superfamily LVJ82_10390 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LVJ82_10390 PF01488 Shikimate / quinate 5-dehydrogenase LVJ82_10390 PF08501 Shikimate dehydrogenase substrate binding domain LVJ82_10400 PF00890 FAD binding domain LVJ82_10405 PF00890 FAD binding domain LVJ82_10415 PF00890 FAD binding domain LVJ82_10425 PF07690 Major Facilitator Superfamily LVJ82_10445 PF05971 RNA methyltransferase LVJ82_10455 PF00183 Hsp90 protein LVJ82_10470 PF07690 Major Facilitator Superfamily LVJ82_10475 PF07364 Metallopeptidase family M81 LVJ82_10475 PF07171 MlrC C-terminus LVJ82_10480 PF07687 Peptidase dimerisation domain LVJ82_10480 PF01546 Peptidase family M20/M25/M40 LVJ82_10490 PF01926 50S ribosome-binding GTPase LVJ82_10495 PF00034 Cytochrome c LVJ82_10500 PF05140 ResB-like family LVJ82_10505 PF01578 Cytochrome C assembly protein LVJ82_10510 PF00571 CBS domain LVJ82_10510 PF03471 Transporter associated domain LVJ82_10510 PF03741 Integral membrane protein TerC family LVJ82_10515 PF01541 GIY-YIG catalytic domain LVJ82_10520 PF00561 alpha/beta hydrolase fold LVJ82_10525 PF01757 Acyltransferase family LVJ82_10535 PF01134 Glucose inhibited division protein A LVJ82_10535 PF13932 GidA associated domain LVJ82_10540 PF02527 rRNA small subunit methyltransferase G LVJ82_10545 PF13614 AAA domain LVJ82_10550 PF17762 HTH domain found in ParB protein LVJ82_10550 PF02195 ParB-like nuclease domain LVJ82_10560 PF00119 ATP synthase A chain LVJ82_10565 PF00137 ATP synthase subunit C LVJ82_10570 PF00430 ATP synthase B/B' CF(0) LVJ82_10575 PF00213 ATP synthase delta (OSCP) subunit LVJ82_10580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LVJ82_10580 PF00306 ATP synthase alpha/beta chain, C terminal domain LVJ82_10580 PF02874 ATP synthase alpha/beta family, beta-barrel domain LVJ82_10585 PF00231 ATP synthase LVJ82_10590 PF02874 ATP synthase alpha/beta family, beta-barrel domain LVJ82_10590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LVJ82_10595 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LVJ82_10595 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LVJ82_10600 PF04102 SlyX LVJ82_10605 PF03591 AzlC protein LVJ82_10615 PF00324 Amino acid permease LVJ82_10620 PF06052 3-hydroxyanthranilic acid dioxygenase LVJ82_10625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LVJ82_10625 PF14824 Sirohaem biosynthesis protein central LVJ82_10625 PF10414 Sirohaem synthase dimerisation region LVJ82_10645 PF01507 Phosphoadenosine phosphosulfate reductase family LVJ82_10650 PF01507 Phosphoadenosine phosphosulfate reductase family LVJ82_10655 PF00009 Elongation factor Tu GTP binding domain LVJ82_10660 PF00258 Flavodoxin LVJ82_10660 PF00175 Oxidoreductase NAD-binding domain LVJ82_10660 PF00667 FAD binding domain LVJ82_10670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LVJ82_10670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LVJ82_10710 PF00893 Small Multidrug Resistance protein LVJ82_10715 PF00893 Small Multidrug Resistance protein LVJ82_10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_10720 PF03466 LysR substrate binding domain LVJ82_10735 PF02615 Malate/L-lactate dehydrogenase LVJ82_10745 PF07690 Major Facilitator Superfamily LVJ82_10750 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LVJ82_10750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LVJ82_10755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LVJ82_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_10760 PF03466 LysR substrate binding domain LVJ82_10775 PF00155 Aminotransferase class I and II LVJ82_10780 PF00202 Aminotransferase class-III LVJ82_10780 PF06968 Biotin and Thiamin Synthesis associated domain LVJ82_10780 PF04055 Radical SAM superfamily LVJ82_10785 PF12697 Alpha/beta hydrolase family LVJ82_10785 PF08241 Methyltransferase domain LVJ82_10860 PF10548 P22AR C-terminal domain LVJ82_10860 PF08346 AntA/AntB antirepressor LVJ82_10875 PF00589 Phage integrase family LVJ82_10875 PF13356 Arm DNA-binding domain LVJ82_10885 PF00691 OmpA family LVJ82_10885 PF13488 Glycine zipper LVJ82_10890 PF03631 Virulence factor BrkB LVJ82_10895 PF03358 NADPH-dependent FMN reductase LVJ82_10900 PF00881 Nitroreductase family LVJ82_10910 PF06821 Serine hydrolase LVJ82_10920 PF13091 PLD-like domain LVJ82_10935 PF08264 Anticodon-binding domain of tRNA LVJ82_10935 PF00133 tRNA synthetases class I (I, L, M and V) LVJ82_10935 PF13603 Leucyl-tRNA synthetase, Domain 2 LVJ82_10935 PF09334 tRNA synthetases class I (M) LVJ82_10940 PF03458 UPF0126 domain LVJ82_10945 PF01207 Dihydrouridine synthase (Dus) LVJ82_10950 PF09313 Domain of unknown function (DUF1971) LVJ82_10950 PF03848 Tellurite resistance protein TehB LVJ82_10955 PF07715 TonB-dependent Receptor Plug Domain LVJ82_10955 PF00593 TonB dependent receptor LVJ82_10960 PF02705 K+ potassium transporter LVJ82_10965 PF01053 Cys/Met metabolism PLP-dependent enzyme LVJ82_10970 PF02321 Outer membrane efflux protein LVJ82_10975 PF13533 Biotin-lipoyl like LVJ82_10980 PF07690 Major Facilitator Superfamily LVJ82_11005 PF09587 Bacterial capsule synthesis protein PGA_cap LVJ82_11025 PF06445 GyrI-like small molecule binding domain LVJ82_11030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LVJ82_11030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LVJ82_11040 PF08000 Bacterial PH domain LVJ82_11050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LVJ82_11050 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_11055 PF08534 Redoxin LVJ82_11055 PF00462 Glutaredoxin LVJ82_11060 PF01553 Acyltransferase LVJ82_11065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LVJ82_11065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LVJ82_11065 PF06827 Zinc finger found in FPG and IleRS LVJ82_11075 PF03550 Outer membrane lipoprotein LolB LVJ82_11080 PF08544 GHMP kinases C terminal LVJ82_11080 PF00288 GHMP kinases N terminal domain LVJ82_11095 PF14572 Phosphoribosyl synthetase-associated domain LVJ82_11095 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LVJ82_11100 PF01386 Ribosomal L25p family LVJ82_11100 PF14693 Ribosomal protein TL5, C-terminal domain LVJ82_11120 PF13472 GDSL-like Lipase/Acylhydrolase family LVJ82_11135 PF02616 Segregation and condensation protein ScpA LVJ82_11140 PF00899 ThiF family LVJ82_11145 PF00582 Universal stress protein family LVJ82_11155 PF10576 Iron-sulfur binding domain of endonuclease III LVJ82_11155 PF00633 Helix-hairpin-helix motif LVJ82_11155 PF00730 HhH-GPD superfamily base excision DNA repair protein LVJ82_11155 PF14815 NUDIX domain LVJ82_11160 PF02926 THUMP domain LVJ82_11160 PF01170 Putative RNA methylase family UPF0020 LVJ82_11170 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LVJ82_11170 PF00056 lactate/malate dehydrogenase, NAD binding domain LVJ82_11175 PF00392 Bacterial regulatory proteins, gntR family LVJ82_11175 PF07702 UTRA domain LVJ82_11190 PF00890 FAD binding domain LVJ82_11190 PF02910 Fumarate reductase flavoprotein C-term LVJ82_11195 PF13085 2Fe-2S iron-sulfur cluster binding domain LVJ82_11200 PF03937 Flavinator of succinate dehydrogenase LVJ82_11205 PF00285 Citrate synthase, C-terminal domain LVJ82_11210 PF00676 Dehydrogenase E1 component LVJ82_11210 PF16870 2-oxoglutarate dehydrogenase C-terminal LVJ82_11210 PF02779 Transketolase, pyrimidine binding domain LVJ82_11210 PF16078 2-oxoglutarate dehydrogenase N-terminus LVJ82_11215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LVJ82_11215 PF00364 Biotin-requiring enzyme LVJ82_11215 PF02817 e3 binding domain LVJ82_11225 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_11225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LVJ82_11235 PF00549 CoA-ligase LVJ82_11235 PF08442 ATP-grasp domain LVJ82_11240 PF02629 CoA binding domain LVJ82_11240 PF00549 CoA-ligase LVJ82_11245 PF05957 Bacterial protein of unknown function (DUF883) LVJ82_11260 PF00403 Heavy-metal-associated domain LVJ82_11270 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LVJ82_11270 PF02563 Polysaccharide biosynthesis/export protein LVJ82_11270 PF10531 SLBB domain LVJ82_11275 PF01451 Low molecular weight phosphotyrosine protein phosphatase LVJ82_11280 PF13614 AAA domain LVJ82_11280 PF13807 G-rich domain on putative tyrosine kinase LVJ82_11280 PF02706 Chain length determinant protein LVJ82_11310 PF03372 Endonuclease/Exonuclease/phosphatase family LVJ82_11315 PF11940 Domain of unknown function (DUF3458) Ig-like fold LVJ82_11315 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LVJ82_11315 PF01433 Peptidase family M1 domain LVJ82_11320 PF02798 Glutathione S-transferase, N-terminal domain LVJ82_11320 PF00043 Glutathione S-transferase, C-terminal domain LVJ82_11325 PF10417 C-terminal domain of 1-Cys peroxiredoxin LVJ82_11325 PF00578 AhpC/TSA family LVJ82_11340 PF01553 Acyltransferase LVJ82_11350 PF00782 Dual specificity phosphatase, catalytic domain LVJ82_11355 PF12146 Serine aminopeptidase, S33 LVJ82_11355 PF12147 Putative methyltransferase LVJ82_11360 PF01066 CDP-alcohol phosphatidyltransferase LVJ82_11365 PF00463 Isocitrate lyase family LVJ82_11380 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LVJ82_11385 PF01025 GrpE LVJ82_11390 PF02803 Thiolase, C-terminal domain LVJ82_11390 PF00108 Thiolase, N-terminal domain LVJ82_11395 PF00012 Hsp70 protein LVJ82_11400 PF00392 Bacterial regulatory proteins, gntR family LVJ82_11400 PF07729 FCD domain LVJ82_11410 PF00285 Citrate synthase, C-terminal domain LVJ82_11415 PF03972 MmgE/PrpD family LVJ82_11420 PF00501 AMP-binding enzyme LVJ82_11420 PF13193 AMP-binding enzyme C-terminal domain LVJ82_11440 PF02381 MraZ protein, putative antitoxin-like LVJ82_11445 PF01795 MraW methylase family LVJ82_11455 PF03717 Penicillin-binding Protein dimerisation domain LVJ82_11455 PF00905 Penicillin binding protein transpeptidase domain LVJ82_11460 PF01225 Mur ligase family, catalytic domain LVJ82_11460 PF02875 Mur ligase family, glutamate ligase domain LVJ82_11460 PF08245 Mur ligase middle domain LVJ82_11465 PF08245 Mur ligase middle domain LVJ82_11465 PF01225 Mur ligase family, catalytic domain LVJ82_11465 PF02875 Mur ligase family, glutamate ligase domain LVJ82_11470 PF00953 Glycosyl transferase family 4 LVJ82_11475 PF08245 Mur ligase middle domain LVJ82_11475 PF02875 Mur ligase family, glutamate ligase domain LVJ82_11480 PF01098 Cell cycle protein LVJ82_11485 PF04101 Glycosyltransferase family 28 C-terminal domain LVJ82_11485 PF03033 Glycosyltransferase family 28 N-terminal domain LVJ82_11490 PF01225 Mur ligase family, catalytic domain LVJ82_11490 PF02875 Mur ligase family, glutamate ligase domain LVJ82_11490 PF08245 Mur ligase middle domain LVJ82_11495 PF07478 D-ala D-ala ligase C-terminus LVJ82_11495 PF01820 D-ala D-ala ligase N-terminus LVJ82_11500 PF03799 Cell division protein FtsQ LVJ82_11500 PF08478 POTRA domain, FtsQ-type LVJ82_11505 PF02491 SHS2 domain inserted in FTSA LVJ82_11510 PF12327 FtsZ family, C-terminal domain LVJ82_11510 PF00091 Tubulin/FtsZ family, GTPase domain LVJ82_11515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LVJ82_11515 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_11525 PF02810 SEC-C motif LVJ82_11525 PF07517 SecA DEAD-like domain LVJ82_11525 PF01043 SecA preprotein cross-linking domain LVJ82_11525 PF07516 SecA Wing and Scaffold domain LVJ82_11530 PF10531 SLBB domain LVJ82_11535 PF00267 Gram-negative porin LVJ82_11540 PF00437 Type II/IV secretion system protein LVJ82_11540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LVJ82_11545 PF00482 Type II secretion system (T2SS), protein F LVJ82_11550 PF06750 Bacterial Peptidase A24 N-terminal domain LVJ82_11550 PF01478 Type IV leader peptidase family LVJ82_11555 PF01121 Dephospho-CoA kinase LVJ82_11560 PF07072 Cell division protein LVJ82_11565 PF03884 DNA gyrase inhibitor YacG LVJ82_11570 PF08264 Anticodon-binding domain of tRNA LVJ82_11570 PF00133 tRNA synthetases class I (I, L, M and V) LVJ82_11570 PF10458 Valyl tRNA synthetase tRNA binding arm LVJ82_11580 PF00557 Metallopeptidase family M24 LVJ82_11585 PF00218 Indole-3-glycerol phosphate synthase LVJ82_11590 PF12697 Alpha/beta hydrolase family LVJ82_11595 PF04751 Protein of unknown function (DUF615) LVJ82_11600 PF01523 Putative modulator of DNA gyrase LVJ82_11605 PF02600 Disulfide bond formation protein DsbB LVJ82_11610 PF00326 Prolyl oligopeptidase family LVJ82_11610 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LVJ82_11620 PF00210 Ferritin-like domain LVJ82_11625 PF00210 Ferritin-like domain LVJ82_11630 PF01817 Chorismate mutase type II LVJ82_11630 PF02153 Prephenate dehydrogenase LVJ82_11635 PF00923 Transaldolase/Fructose-6-phosphate aldolase LVJ82_11640 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_11655 PF00005 ABC transporter LVJ82_11670 PF00140 Sigma-70 factor, region 1.2 LVJ82_11670 PF04542 Sigma-70 region 2 LVJ82_11670 PF04545 Sigma-70, region 4 LVJ82_11680 PF00795 Carbon-nitrogen hydrolase LVJ82_11685 PF05661 Protein of unknown function (DUF808) LVJ82_11690 PF00571 CBS domain LVJ82_11690 PF03471 Transporter associated domain LVJ82_11705 PF02562 PhoH-like protein LVJ82_11715 PF00873 AcrB/AcrD/AcrF family LVJ82_11735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_11735 PF00183 Hsp90 protein LVJ82_11750 PF12706 Beta-lactamase superfamily domain LVJ82_11750 PF03099 Biotin/lipoate A/B protein ligase family LVJ82_11755 PF01026 TatD related DNase LVJ82_11765 PF09115 DNA polymerase III, delta subunit, C terminal LVJ82_11770 PF02223 Thymidylate kinase LVJ82_11775 PF02618 YceG-like family LVJ82_11780 PF01641 SelR domain LVJ82_11790 PF00266 Aminotransferase class-V LVJ82_11800 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_11810 PF03466 LysR substrate binding domain LVJ82_11820 PF00970 Oxidoreductase FAD-binding domain LVJ82_11820 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_11825 PF01370 NAD dependent epimerase/dehydratase family LVJ82_11840 PF01425 Amidase LVJ82_11850 PF08946 Osmosensory transporter coiled coil LVJ82_11850 PF00083 Sugar (and other) transporter LVJ82_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_11855 PF03466 LysR substrate binding domain LVJ82_11860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LVJ82_11865 PF00171 Aldehyde dehydrogenase family LVJ82_11870 PF07690 Major Facilitator Superfamily LVJ82_11875 PF01557 Fumarylacetoacetate (FAA) hydrolase family LVJ82_11880 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LVJ82_11880 PF01118 Semialdehyde dehydrogenase, NAD binding domain LVJ82_11885 PF00682 HMGL-like LVJ82_11885 PF07836 DmpG-like communication domain LVJ82_11890 PF01557 Fumarylacetoacetate (FAA) hydrolase family LVJ82_11895 PF01042 Endoribonuclease L-PSP LVJ82_11900 PF06052 3-hydroxyanthranilic acid dioxygenase LVJ82_11910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_11910 PF03466 LysR substrate binding domain LVJ82_11915 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_11915 PF03895 YadA-like membrane anchor domain LVJ82_11915 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_11915 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_11925 PF06945 Protein of unknown function (DUF1289) LVJ82_11950 PF01738 Dienelactone hydrolase family LVJ82_11955 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_11960 PF01252 Signal peptidase (SPase) II LVJ82_11965 PF02401 LytB protein LVJ82_11990 PF12706 Beta-lactamase superfamily domain LVJ82_11995 PF00267 Gram-negative porin LVJ82_12000 PF12146 Serine aminopeptidase, S33 LVJ82_12005 PF07690 Major Facilitator Superfamily LVJ82_12015 PF09278 MerR, DNA binding LVJ82_12015 PF00376 MerR family regulatory protein LVJ82_12020 PF07690 Major Facilitator Superfamily LVJ82_12025 PF00267 Gram-negative porin LVJ82_12030 PF01011 PQQ enzyme repeat LVJ82_12035 PF00005 ABC transporter LVJ82_12040 PF01032 FecCD transport family LVJ82_12055 PF00593 TonB dependent receptor LVJ82_12055 PF07715 TonB-dependent Receptor Plug Domain LVJ82_12085 PF00768 D-alanyl-D-alanine carboxypeptidase LVJ82_12090 PF00202 Aminotransferase class-III LVJ82_12095 PF02146 Sir2 family LVJ82_12105 PF04306 Protein of unknown function (DUF456) LVJ82_12110 PF03358 NADPH-dependent FMN reductase LVJ82_12115 PF09084 NMT1/THI5 like LVJ82_12120 PF00296 Luciferase-like monooxygenase LVJ82_12125 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_12130 PF00005 ABC transporter LVJ82_12140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LVJ82_12145 PF02224 Cytidylate kinase LVJ82_12150 PF00575 S1 RNA binding domain LVJ82_12155 PF00216 Bacterial DNA-binding protein LVJ82_12160 PF03969 AFG1-like ATPase LVJ82_12165 PF00334 Nucleoside diphosphate kinase LVJ82_12170 PF04055 Radical SAM superfamily LVJ82_12185 PF04551 GcpE protein LVJ82_12190 PF13393 Histidyl-tRNA synthetase LVJ82_12190 PF03129 Anticodon binding domain LVJ82_12195 PF09976 Tetratricopeptide repeat-like domain LVJ82_12200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LVJ82_12200 PF01926 50S ribosome-binding GTPase LVJ82_12205 PF17209 Hfq protein LVJ82_12215 PF03060 Nitronate monooxygenase LVJ82_12225 PF00929 Exonuclease LVJ82_12230 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LVJ82_12235 PF02542 YgbB family LVJ82_12240 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LVJ82_12245 PF01923 Cobalamin adenosyltransferase LVJ82_12255 PF10576 Iron-sulfur binding domain of endonuclease III LVJ82_12255 PF00633 Helix-hairpin-helix motif LVJ82_12255 PF00730 HhH-GPD superfamily base excision DNA repair protein LVJ82_12260 PF13180 PDZ domain LVJ82_12265 PF00933 Glycosyl hydrolase family 3 N terminal domain LVJ82_12275 PF00800 Prephenate dehydratase LVJ82_12275 PF01842 ACT domain LVJ82_12275 PF01817 Chorismate mutase type II LVJ82_12280 PF03641 Possible lysine decarboxylase LVJ82_12295 PF03109 ABC1 family LVJ82_12330 PF00114 Pilin (bacterial filament) LVJ82_12330 PF07963 Prokaryotic N-terminal methylation motif LVJ82_12345 PF03710 Glutamate-ammonia ligase adenylyltransferase LVJ82_12345 PF08335 GlnD PII-uridylyltransferase LVJ82_12350 PF00795 Carbon-nitrogen hydrolase LVJ82_12355 PF05199 GMC oxidoreductase LVJ82_12365 PF03883 Peroxide stress protein YaaA LVJ82_12380 PF03880 DbpA RNA binding domain LVJ82_12380 PF00271 Helicase conserved C-terminal domain LVJ82_12380 PF00270 DEAD/DEAH box helicase LVJ82_12420 PF00682 HMGL-like LVJ82_12420 PF08502 LeuA allosteric (dimerisation) domain LVJ82_12425 PF02311 AraC-like ligand binding domain LVJ82_12425 PF12833 Helix-turn-helix domain LVJ82_12430 PF03466 LysR substrate binding domain LVJ82_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_12435 PF07690 Major Facilitator Superfamily LVJ82_12445 PF00970 Oxidoreductase FAD-binding domain LVJ82_12445 PF00175 Oxidoreductase NAD-binding domain LVJ82_12445 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_12450 PF00171 Aldehyde dehydrogenase family LVJ82_12455 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LVJ82_12455 PF00355 Rieske [2Fe-2S] domain LVJ82_12460 PF07859 alpha/beta hydrolase fold LVJ82_12470 PF00180 Isocitrate/isopropylmalate dehydrogenase LVJ82_12475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_12475 PF03466 LysR substrate binding domain LVJ82_12490 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LVJ82_12500 PF01717 Cobalamin-independent synthase, Catalytic domain LVJ82_12505 PF01613 Flavin reductase like domain LVJ82_12515 PF02627 Carboxymuconolactone decarboxylase family LVJ82_12570 PF09588 YqaJ-like viral recombinase domain LVJ82_12575 PF03230 Antirestriction protein LVJ82_12625 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_12625 PF03895 YadA-like membrane anchor domain LVJ82_12625 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_12625 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_12630 PF00691 OmpA family LVJ82_12630 PF01389 OmpA-like transmembrane domain LVJ82_12640 PF14659 Phage integrase, N-terminal SAM-like domain LVJ82_12640 PF13356 Arm DNA-binding domain LVJ82_12640 PF00589 Phage integrase family LVJ82_12650 PF00348 Polyprenyl synthetase LVJ82_12655 PF00829 Ribosomal prokaryotic L21 protein LVJ82_12660 PF01016 Ribosomal L27 protein LVJ82_12665 PF01926 50S ribosome-binding GTPase LVJ82_12665 PF01018 GTP1/OBG LVJ82_12675 PF09190 DALR domain LVJ82_12675 PF01406 tRNA synthetases class I (C) catalytic domain LVJ82_12685 PF01197 Ribosomal protein L31 LVJ82_12695 PF01979 Amidohydrolase family LVJ82_12705 PF03795 YCII-related domain LVJ82_12725 PF03193 RsgA GTPase LVJ82_12730 PF01435 Peptidase family M48 LVJ82_12735 PF00929 Exonuclease LVJ82_12740 PF00342 Phosphoglucose isomerase LVJ82_12745 PF02464 Competence-damaged protein LVJ82_12760 PF01416 tRNA pseudouridine synthase LVJ82_12765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LVJ82_12770 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_12775 PF00290 Tryptophan synthase alpha chain LVJ82_12780 PF17848 Acetyl-coA carboxylase zinc finger domain LVJ82_12780 PF01039 Carboxyl transferase domain LVJ82_12795 PF01970 Tripartite tricarboxylate transporter TctA family LVJ82_12800 PF05145 Transition state regulatory protein AbrB LVJ82_12805 PF07995 Glucose / Sorbosone dehydrogenase LVJ82_12830 PF03797 Autotransporter beta-domain LVJ82_12830 PF00657 GDSL-like Lipase/Acylhydrolase LVJ82_12835 PF11067 Protein of unknown function (DUF2868) LVJ82_12840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LVJ82_12840 PF01926 50S ribosome-binding GTPase LVJ82_12855 PF00753 Metallo-beta-lactamase superfamily LVJ82_12865 PF02110 Hydroxyethylthiazole kinase family LVJ82_12870 PF08543 Phosphomethylpyrimidine kinase LVJ82_12875 PF02581 Thiamine monophosphate synthase LVJ82_12890 PF00892 EamA-like transporter family LVJ82_12895 PF00392 Bacterial regulatory proteins, gntR family LVJ82_12895 PF00155 Aminotransferase class I and II LVJ82_12905 PF13167 GTP-binding GTPase N-terminal LVJ82_12905 PF01926 50S ribosome-binding GTPase LVJ82_12905 PF16360 GTP-binding GTPase Middle Region LVJ82_12910 PF01066 CDP-alcohol phosphatidyltransferase LVJ82_12920 PF01208 Uroporphyrinogen decarboxylase (URO-D) LVJ82_12925 PF00226 DnaJ domain LVJ82_12925 PF01556 DnaJ C terminal domain LVJ82_12925 PF00684 DnaJ central domain LVJ82_12930 PF13091 PLD-like domain LVJ82_12930 PF13396 Phospholipase_D-nuclease N-terminal LVJ82_12935 PF13091 PLD-like domain LVJ82_12935 PF13396 Phospholipase_D-nuclease N-terminal LVJ82_12940 PF00271 Helicase conserved C-terminal domain LVJ82_12940 PF17764 3′ DNA-binding domain (3′BD) LVJ82_12940 PF18074 Primosomal protein N C-terminal domain LVJ82_12940 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LVJ82_12940 PF00270 DEAD/DEAH box helicase LVJ82_12950 PF08379 Bacterial transglutaminase-like N-terminal region LVJ82_12950 PF01841 Transglutaminase-like superfamily LVJ82_12965 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LVJ82_12970 PF00462 Glutaredoxin LVJ82_12975 PF02556 Preprotein translocase subunit SecB LVJ82_12990 PF10127 RNA repair pathway DNA polymerase beta family LVJ82_13015 PF17871 AAA lid domain LVJ82_13015 PF02861 Clp amino terminal domain, pathogenicity island component LVJ82_13015 PF10431 C-terminal, D2-small domain, of ClpB protein LVJ82_13015 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_13015 PF07724 AAA domain (Cdc48 subfamily) LVJ82_13025 PF00027 Cyclic nucleotide-binding domain LVJ82_13025 PF13545 Crp-like helix-turn-helix domain LVJ82_13030 PF04055 Radical SAM superfamily LVJ82_13030 PF06969 HemN C-terminal domain LVJ82_13035 PF03737 Aldolase/RraA LVJ82_13040 PF02566 OsmC-like protein LVJ82_13055 PF01048 Phosphorylase superfamily LVJ82_13060 PF00581 Rhodanese-like domain LVJ82_13065 PF00230 Major intrinsic protein LVJ82_13070 PF08019 Phosphoethanolamine transferase EptA/EptB LVJ82_13070 PF00884 Sulfatase LVJ82_13075 PF00072 Response regulator receiver domain LVJ82_13075 PF00486 Transcriptional regulatory protein, C terminal LVJ82_13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_13080 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_13085 PF06940 Domain of unknown function (DUF1287) LVJ82_13100 PF01554 MatE LVJ82_13125 PF00459 Inositol monophosphatase family LVJ82_13130 PF00588 SpoU rRNA Methylase family LVJ82_13140 PF05698 Bacterial trigger factor protein (TF) C-terminus LVJ82_13140 PF05697 Bacterial trigger factor protein (TF) LVJ82_13140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LVJ82_13145 PF00574 Clp protease LVJ82_13150 PF07724 AAA domain (Cdc48 subfamily) LVJ82_13150 PF10431 C-terminal, D2-small domain, of ClpB protein LVJ82_13150 PF06689 ClpX C4-type zinc finger LVJ82_13175 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_13175 PF05362 Lon protease (S16) C-terminal proteolytic domain LVJ82_13175 PF02190 ATP-dependent protease La (LON) substrate-binding domain LVJ82_13180 PF00216 Bacterial DNA-binding protein LVJ82_13200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LVJ82_13200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LVJ82_13205 PF00772 DnaB-like helicase N terminal domain LVJ82_13205 PF03796 DnaB-like helicase C terminal domain LVJ82_13250 PF01593 Flavin containing amine oxidoreductase LVJ82_13260 PF18073 Rubredoxin metal binding domain LVJ82_13265 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_13265 PF05362 Lon protease (S16) C-terminal proteolytic domain LVJ82_13265 PF02190 ATP-dependent protease La (LON) substrate-binding domain LVJ82_13280 PF01571 Aminomethyltransferase folate-binding domain LVJ82_13285 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LVJ82_13290 PF00986 DNA gyrase B subunit, carboxyl terminus LVJ82_13290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_13290 PF01751 Toprim domain LVJ82_13290 PF00204 DNA gyrase B LVJ82_13300 PF00293 NUDIX domain LVJ82_13310 PF00303 Thymidylate synthase LVJ82_13315 PF00186 Dihydrofolate reductase LVJ82_13330 PF07690 Major Facilitator Superfamily LVJ82_13335 PF07687 Peptidase dimerisation domain LVJ82_13335 PF01546 Peptidase family M20/M25/M40 LVJ82_13340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LVJ82_13340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LVJ82_13360 PF00883 Cytosol aminopeptidase family, catalytic domain LVJ82_13365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LVJ82_13365 PF08447 PAS fold LVJ82_13375 PF04384 Iron-sulphur cluster assembly LVJ82_13380 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_13390 PF00012 Hsp70 protein LVJ82_13395 PF07743 HSCB C-terminal oligomerisation domain LVJ82_13395 PF00226 DnaJ domain LVJ82_13400 PF01521 Iron-sulphur cluster biosynthesis LVJ82_13405 PF01592 NifU-like N terminal domain LVJ82_13410 PF00266 Aminotransferase class-V LVJ82_13415 PF02082 Transcriptional regulator LVJ82_13425 PF00255 Glutathione peroxidase LVJ82_13430 PF00692 dUTPase LVJ82_13435 PF04381 Putative exonuclease, RdgC LVJ82_13440 PF01551 Peptidase family M23 LVJ82_13440 PF01476 LysM domain LVJ82_13450 PF01975 Survival protein SurE LVJ82_13460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_13460 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_13465 PF03928 Haem-degrading LVJ82_13475 PF02754 Cysteine-rich domain LVJ82_13475 PF13183 4Fe-4S dicluster domain LVJ82_13480 PF01565 FAD binding domain LVJ82_13485 PF01565 FAD binding domain LVJ82_13485 PF02913 FAD linked oxidases, C-terminal domain LVJ82_13490 PF07859 alpha/beta hydrolase fold LVJ82_13495 PF02780 Transketolase, C-terminal domain LVJ82_13495 PF00456 Transketolase, thiamine diphosphate binding domain LVJ82_13495 PF02779 Transketolase, pyrimidine binding domain LVJ82_13530 PF13350 Tyrosine phosphatase family LVJ82_13535 PF06779 Uncharacterised MFS-type transporter YbfB LVJ82_13540 PF01323 DSBA-like thioredoxin domain LVJ82_13545 PF00850 Histone deacetylase domain LVJ82_13550 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin LVJ82_13550 PF03895 YadA-like membrane anchor domain LVJ82_13550 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_13550 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_13555 PF00437 Type II/IV secretion system protein LVJ82_13570 PF01144 Coenzyme A transferase LVJ82_13575 PF01144 Coenzyme A transferase LVJ82_13580 PF01256 Carbohydrate kinase LVJ82_13585 PF02222 ATP-grasp domain LVJ82_13585 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LVJ82_13595 PF00731 AIR carboxylase LVJ82_13605 PF01596 O-methyltransferase LVJ82_13615 PF12626 Polymerase A arginine-rich C-terminus LVJ82_13615 PF12627 Probable RNA and SrmB- binding site of polymerase A LVJ82_13615 PF01743 Poly A polymerase head domain LVJ82_13620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LVJ82_13625 PF01712 Deoxynucleoside kinase LVJ82_13630 PF02548 Ketopantoate hydroxymethyltransferase LVJ82_13635 PF02569 Pantoate-beta-alanine ligase LVJ82_13655 PF01926 50S ribosome-binding GTPase LVJ82_13655 PF06071 Protein of unknown function (DUF933) LVJ82_13665 PF03358 NADPH-dependent FMN reductase LVJ82_13680 PF00579 tRNA synthetases class I (W and Y) LVJ82_13685 PF04264 YceI-like domain LVJ82_13690 PF00694 Aconitase C-terminal domain LVJ82_13690 PF00330 Aconitase family (aconitate hydratase) LVJ82_13695 PF01594 AI-2E family transporter LVJ82_13700 PF00308 Bacterial dnaA protein LVJ82_13700 PF08299 Bacterial dnaA protein helix-turn-helix LVJ82_13725 PF01810 LysE type translocator LVJ82_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_13730 PF03466 LysR substrate binding domain LVJ82_13735 PF00266 Aminotransferase class-V LVJ82_13740 PF04973 Nicotinamide mononucleotide transporter LVJ82_13745 PF04973 Nicotinamide mononucleotide transporter LVJ82_13750 PF00464 Serine hydroxymethyltransferase LVJ82_13755 PF01451 Low molecular weight phosphotyrosine protein phosphatase LVJ82_13765 PF13847 Methyltransferase domain LVJ82_13775 PF00679 Elongation factor G C-terminus LVJ82_13775 PF00009 Elongation factor Tu GTP binding domain LVJ82_13775 PF03144 Elongation factor Tu domain 2 LVJ82_13780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LVJ82_13780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LVJ82_13790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LVJ82_13795 PF01037 Lrp/AsnC ligand binding domain LVJ82_13800 PF03301 Tryptophan 2,3-dioxygenase LVJ82_13805 PF00266 Aminotransferase class-V LVJ82_13810 PF00324 Amino acid permease LVJ82_13825 PF00226 DnaJ domain LVJ82_13825 PF01556 DnaJ C terminal domain LVJ82_13825 PF00684 DnaJ central domain LVJ82_13850 PF07690 Major Facilitator Superfamily LVJ82_13855 PF00710 Asparaginase, N-terminal LVJ82_13855 PF17763 Glutaminase/Asparaginase C-terminal domain LVJ82_13870 PF00005 ABC transporter LVJ82_13870 PF12848 ABC transporter LVJ82_13875 PF08534 Redoxin LVJ82_13880 PF00814 Glycoprotease family LVJ82_13885 PF13416 Bacterial extracellular solute-binding protein LVJ82_13890 PF13416 Bacterial extracellular solute-binding protein LVJ82_13910 PF05726 Pirin C-terminal cupin domain LVJ82_13910 PF02678 Pirin LVJ82_13915 PF00155 Aminotransferase class I and II LVJ82_13920 PF00202 Aminotransferase class-III LVJ82_13930 PF00171 Aldehyde dehydrogenase family LVJ82_13935 PF00149 Calcineurin-like phosphoesterase LVJ82_13940 PF03462 PCRF domain LVJ82_13940 PF00472 RF-1 domain LVJ82_13945 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LVJ82_13945 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LVJ82_13945 PF01488 Shikimate / quinate 5-dehydrogenase LVJ82_13950 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LVJ82_13950 PF01243 Pyridoxamine 5'-phosphate oxidase LVJ82_13960 PF03358 NADPH-dependent FMN reductase LVJ82_13965 PF01758 Sodium Bile acid symporter family LVJ82_13990 PF00403 Heavy-metal-associated domain LVJ82_13995 PF13411 MerR HTH family regulatory protein LVJ82_14005 PF01119 DNA mismatch repair protein, C-terminal domain LVJ82_14005 PF08676 MutL C terminal dimerisation domain LVJ82_14010 PF09335 SNARE associated Golgi protein LVJ82_14015 PF07549 SecD/SecF GG Motif LVJ82_14015 PF02355 Protein export membrane protein LVJ82_14020 PF07549 SecD/SecF GG Motif LVJ82_14020 PF02355 Protein export membrane protein LVJ82_14020 PF13721 SecD export protein N-terminal TM region LVJ82_14030 PF01702 Queuine tRNA-ribosyltransferase LVJ82_14040 PF03129 Anticodon binding domain LVJ82_14040 PF02824 TGS domain LVJ82_14040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LVJ82_14040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LVJ82_14045 PF05198 Translation initiation factor IF-3, N-terminal domain LVJ82_14045 PF00707 Translation initiation factor IF-3, C-terminal domain LVJ82_14050 PF01632 Ribosomal protein L35 LVJ82_14055 PF00453 Ribosomal protein L20 LVJ82_14060 PF01409 tRNA synthetases class II core domain (F) LVJ82_14060 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LVJ82_14065 PF03483 B3/4 domain LVJ82_14065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LVJ82_14065 PF01588 Putative tRNA binding domain LVJ82_14065 PF03147 Ferredoxin-fold anticodon binding domain LVJ82_14065 PF03484 tRNA synthetase B5 domain LVJ82_14070 PF00216 Bacterial DNA-binding protein LVJ82_14085 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_14085 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_14085 PF03895 YadA-like membrane anchor domain LVJ82_14085 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_14090 PF00521 DNA gyrase/topoisomerase IV, subunit A LVJ82_14090 PF03989 DNA gyrase C-terminal domain, beta-propeller LVJ82_14100 PF09285 Elongation factor P, C-terminal LVJ82_14100 PF08207 Elongation factor P (EF-P) KOW-like domain LVJ82_14100 PF01132 Elongation factor P (EF-P) OB domain LVJ82_14105 PF01554 MatE LVJ82_14110 PF01565 FAD binding domain LVJ82_14110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LVJ82_14115 PF08359 YsiA-like protein, C-terminal region LVJ82_14115 PF00440 Bacterial regulatory proteins, tetR family LVJ82_14120 PF05872 Bacterial protein of unknown function (DUF853) LVJ82_14125 PF07085 DRTGG domain LVJ82_14125 PF01515 Phosphate acetyl/butaryl transferase LVJ82_14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_14140 PF03466 LysR substrate binding domain LVJ82_14155 PF08521 Two-component sensor kinase N-terminal LVJ82_14155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_14155 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_14160 PF00486 Transcriptional regulatory protein, C terminal LVJ82_14160 PF00072 Response regulator receiver domain LVJ82_14165 PF04261 Dyp-type peroxidase family LVJ82_14170 PF09375 Imelysin LVJ82_14170 PF13473 Cupredoxin-like domain LVJ82_14175 PF03239 Iron permease FTR1 family LVJ82_14180 PF00378 Enoyl-CoA hydratase/isomerase LVJ82_14215 PF03070 TENA/THI-4/PQQC family LVJ82_14220 PF06470 SMC proteins Flexible Hinge Domain LVJ82_14220 PF02463 RecF/RecN/SMC N terminal domain LVJ82_14230 PF03895 YadA-like membrane anchor domain LVJ82_14230 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_14230 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_14230 PF03895 YadA-like membrane anchor domain LVJ82_14230 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_14230 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_14235 PF01479 S4 domain LVJ82_14240 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LVJ82_14245 PF09179 TilS substrate binding domain LVJ82_14245 PF01171 PP-loop family LVJ82_14250 PF04542 Sigma-70 region 2 LVJ82_14250 PF08281 Sigma-70, region 4 LVJ82_14255 PF01678 Diaminopimelate epimerase LVJ82_14275 PF00149 Calcineurin-like phosphoesterase LVJ82_14280 PF03960 ArsC family LVJ82_14295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LVJ82_14295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LVJ82_14295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LVJ82_14295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LVJ82_14300 PF02885 Glycosyl transferase family, helical bundle domain LVJ82_14300 PF00591 Glycosyl transferase family, a/b domain LVJ82_14305 PF00117 Glutamine amidotransferase class-I LVJ82_14310 PF02321 Outer membrane efflux protein LVJ82_14330 PF03315 Serine dehydratase beta chain LVJ82_14330 PF03313 Serine dehydratase alpha chain LVJ82_14335 PF01464 Transglycosylase SLT domain LVJ82_14335 PF01476 LysM domain LVJ82_14345 PF00075 RNase H LVJ82_14355 PF04002 RadC-like JAB domain LVJ82_14370 PF13525 Outer membrane lipoprotein LVJ82_14375 PF00849 RNA pseudouridylate synthase LVJ82_14375 PF01479 S4 domain LVJ82_14380 PF02578 Multi-copper polyphenol oxidoreductase laccase LVJ82_14385 PF00753 Metallo-beta-lactamase superfamily LVJ82_14385 PF03772 Competence protein LVJ82_14390 PF00005 ABC transporter LVJ82_14395 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14400 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14415 PF00691 OmpA family LVJ82_14415 PF01389 OmpA-like transmembrane domain LVJ82_14420 PF00171 Aldehyde dehydrogenase family LVJ82_14425 PF00860 Permease family LVJ82_14435 PF03169 OPT oligopeptide transporter protein LVJ82_14440 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_14450 PF00834 Ribulose-phosphate 3 epimerase family LVJ82_14460 PF00719 Inorganic pyrophosphatase LVJ82_14470 PF03232 Ubiquinone biosynthesis protein COQ7 LVJ82_14480 PF02463 RecF/RecN/SMC N terminal domain LVJ82_14485 PF01513 ATP-NAD kinase LVJ82_14490 PF01625 Peptide methionine sulfoxide reductase LVJ82_14495 PF01156 Inosine-uridine preferring nucleoside hydrolase LVJ82_14500 PF01207 Dihydrouridine synthase (Dus) LVJ82_14505 PF00588 SpoU rRNA Methylase family LVJ82_14505 PF08032 RNA 2'-O ribose methyltransferase substrate binding LVJ82_14510 PF02810 SEC-C motif LVJ82_14510 PF03695 Uncharacterised protein family (UPF0149) LVJ82_14530 PF01098 Cell cycle protein LVJ82_14535 PF03717 Penicillin-binding Protein dimerisation domain LVJ82_14535 PF00905 Penicillin binding protein transpeptidase domain LVJ82_14545 PF04085 rod shape-determining protein MreC LVJ82_14555 PF02686 Glu-tRNAGln amidotransferase C subunit LVJ82_14560 PF01425 Amidase LVJ82_14570 PF00580 UvrD/REP helicase N-terminal domain LVJ82_14570 PF13361 UvrD-like helicase C-terminal domain LVJ82_14575 PF02934 GatB/GatE catalytic domain LVJ82_14575 PF02637 GatB domain LVJ82_14580 PF04390 Lipopolysaccharide-assembly LVJ82_14595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LVJ82_14595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LVJ82_14600 PF01230 HIT domain LVJ82_14605 PF01070 FMN-dependent dehydrogenase LVJ82_14630 PF00202 Aminotransferase class-III LVJ82_14635 PF00120 Glutamine synthetase, catalytic domain LVJ82_14640 PF07722 Peptidase C26 LVJ82_14645 PF02698 DUF218 domain LVJ82_14665 PF00456 Transketolase, thiamine diphosphate binding domain LVJ82_14665 PF17831 Pyruvate dehydrogenase E1 component middle domain LVJ82_14680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LVJ82_14680 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_14685 PF07690 Major Facilitator Superfamily LVJ82_14690 PF00083 Sugar (and other) transporter LVJ82_14690 PF08946 Osmosensory transporter coiled coil LVJ82_14695 PF00999 Sodium/hydrogen exchanger family LVJ82_14710 PF00005 ABC transporter LVJ82_14715 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14720 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_14730 PF00330 Aconitase family (aconitate hydratase) LVJ82_14730 PF06434 Aconitate hydratase 2 N-terminus LVJ82_14730 PF11791 Aconitate B N-terminal domain LVJ82_14735 PF09397 Ftsk gamma domain LVJ82_14735 PF01580 FtsK/SpoIIIE family LVJ82_14735 PF17854 FtsK alpha domain LVJ82_14775 PF05544 Proline racemase LVJ82_14780 PF01266 FAD dependent oxidoreductase LVJ82_14785 PF00701 Dihydrodipicolinate synthetase family LVJ82_14790 PF00171 Aldehyde dehydrogenase family LVJ82_14795 PF13458 Periplasmic binding protein LVJ82_14800 PF07690 Major Facilitator Superfamily LVJ82_14805 PF14525 AraC-binding-like domain LVJ82_14805 PF12833 Helix-turn-helix domain LVJ82_14810 PF00355 Rieske [2Fe-2S] domain LVJ82_14810 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LVJ82_14815 PF00866 Ring hydroxylating beta subunit LVJ82_14820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LVJ82_14820 PF02805 Metal binding domain of Ada LVJ82_14820 PF12833 Helix-turn-helix domain LVJ82_14820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LVJ82_14825 PF00593 TonB dependent receptor LVJ82_14825 PF07715 TonB-dependent Receptor Plug Domain LVJ82_14830 PF00005 ABC transporter LVJ82_14835 PF01032 FecCD transport family LVJ82_14840 PF01497 Periplasmic binding protein LVJ82_14845 PF00005 ABC transporter LVJ82_14850 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LVJ82_14850 PF02769 AIR synthase related protein, C-terminal domain LVJ82_14850 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LVJ82_14855 PF00543 Nitrogen regulatory protein P-II LVJ82_14865 PF00107 Zinc-binding dehydrogenase LVJ82_14865 PF08240 Alcohol dehydrogenase GroES-like domain LVJ82_14870 PF00756 Putative esterase LVJ82_14875 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_14880 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14885 PF00764 Arginosuccinate synthase LVJ82_14890 PF03222 Tryptophan/tyrosine permease family LVJ82_14895 PF01614 Bacterial transcriptional regulator LVJ82_14895 PF09339 IclR helix-turn-helix domain LVJ82_14900 PF00465 Iron-containing alcohol dehydrogenase LVJ82_14905 PF00171 Aldehyde dehydrogenase family LVJ82_14920 PF01235 Sodium:alanine symporter family LVJ82_14935 PF01266 FAD dependent oxidoreductase LVJ82_14940 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14945 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_14950 PF00005 ABC transporter LVJ82_14950 PF08402 TOBE domain LVJ82_14955 PF03594 Benzoate membrane transport protein LVJ82_14975 PF04286 Protein of unknown function (DUF445) LVJ82_14980 PF00873 AcrB/AcrD/AcrF family LVJ82_14985 PF06968 Biotin and Thiamin Synthesis associated domain LVJ82_14985 PF04055 Radical SAM superfamily LVJ82_14990 PF00893 Small Multidrug Resistance protein LVJ82_14995 PF07690 Major Facilitator Superfamily LVJ82_15010 PF01042 Endoribonuclease L-PSP LVJ82_15015 PF06969 HemN C-terminal domain LVJ82_15015 PF04055 Radical SAM superfamily LVJ82_15020 PF01725 Ham1 family LVJ82_15030 PF06804 NlpB/DapX lipoprotein LVJ82_15035 PF00701 Dihydrodipicolinate synthetase family LVJ82_15040 PF12848 ABC transporter LVJ82_15040 PF00005 ABC transporter LVJ82_15060 PF01235 Sodium:alanine symporter family LVJ82_15065 PF03358 NADPH-dependent FMN reductase LVJ82_15090 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LVJ82_15090 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LVJ82_15095 PF12823 Domain of unknown function (DUF3817) LVJ82_15100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LVJ82_15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_15105 PF03466 LysR substrate binding domain LVJ82_15110 PF07690 Major Facilitator Superfamily LVJ82_15130 PF09905 DNA-binding protein VF530 LVJ82_15145 PF00111 2Fe-2S iron-sulfur cluster binding domain LVJ82_15150 PF00268 Ribonucleotide reductase, small chain LVJ82_15155 PF03477 ATP cone domain LVJ82_15155 PF02867 Ribonucleotide reductase, barrel domain LVJ82_15155 PF00317 Ribonucleotide reductase, all-alpha domain LVJ82_15160 PF01161 Phosphatidylethanolamine-binding protein LVJ82_15175 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) LVJ82_15180 PF02397 Bacterial sugar transferase LVJ82_15185 PF03060 Nitronate monooxygenase LVJ82_15190 PF01042 Endoribonuclease L-PSP LVJ82_15195 PF04073 Aminoacyl-tRNA editing domain LVJ82_15200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LVJ82_15205 PF00005 ABC transporter LVJ82_15205 PF12704 MacB-like periplasmic core domain LVJ82_15205 PF02687 FtsX-like permease family LVJ82_15210 PF02321 Outer membrane efflux protein LVJ82_15215 PF01418 Helix-turn-helix domain, rpiR family LVJ82_15215 PF01380 SIS domain LVJ82_15220 PF01427 D-ala-D-ala dipeptidase LVJ82_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_15260 PF03466 LysR substrate binding domain LVJ82_15265 PF03601 Conserved hypothetical protein 698 LVJ82_15270 PF13667 ThiC-associated domain LVJ82_15270 PF01964 Radical SAM ThiC family LVJ82_15310 PF00085 Thioredoxin LVJ82_15315 PF05958 tRNA (Uracil-5-)-methyltransferase LVJ82_15320 PF04715 Anthranilate synthase component I, N terminal region LVJ82_15320 PF00425 chorismate binding enzyme LVJ82_15325 PF12697 Alpha/beta hydrolase family LVJ82_15330 PF01264 Chorismate synthase LVJ82_15340 PF04228 Putative neutral zinc metallopeptidase LVJ82_15355 PF00106 short chain dehydrogenase LVJ82_15360 PF13091 PLD-like domain LVJ82_15360 PF13396 Phospholipase_D-nuclease N-terminal LVJ82_15365 PF01266 FAD dependent oxidoreductase LVJ82_15365 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LVJ82_15375 PF01259 SAICAR synthetase LVJ82_15380 PF00586 AIR synthase related protein, N-terminal domain LVJ82_15380 PF02769 AIR synthase related protein, C-terminal domain LVJ82_15385 PF04608 Phosphatidylglycerophosphatase A LVJ82_15390 PF04379 ApaG domain LVJ82_15410 PF00581 Rhodanese-like domain LVJ82_15410 PF11127 Protein of unknown function (DUF2892) LVJ82_15415 PF02627 Carboxymuconolactone decarboxylase family LVJ82_15420 PF13520 Amino acid permease LVJ82_15440 PF00171 Aldehyde dehydrogenase family LVJ82_15450 PF01276 Orn/Lys/Arg decarboxylase, major domain LVJ82_15450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LVJ82_15465 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_15465 PF03895 YadA-like membrane anchor domain LVJ82_15465 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_15470 PF13569 Domain of unknown function (DUF4132) LVJ82_15480 PF07728 AAA domain (dynein-related subfamily) LVJ82_15490 PF05762 VWA domain containing CoxE-like protein LVJ82_15510 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_15620 PF13356 Arm DNA-binding domain LVJ82_15620 PF00589 Phage integrase family LVJ82_15635 PF02321 Outer membrane efflux protein LVJ82_15640 PF00873 AcrB/AcrD/AcrF family LVJ82_15645 PF00529 HlyD membrane-fusion protein of T1SS LVJ82_15645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LVJ82_15650 PF00440 Bacterial regulatory proteins, tetR family LVJ82_15650 PF08361 MAATS-type transcriptional repressor, C-terminal region LVJ82_15655 PF07726 ATPase family associated with various cellular activities (AAA) LVJ82_15655 PF17863 AAA lid domain LVJ82_15665 PF13559 Domain of unknown function (DUF4129) LVJ82_15665 PF11992 Domain of unknown function (DUF3488) LVJ82_15665 PF01841 Transglutaminase-like superfamily LVJ82_15675 PF04060 Putative Fe-S cluster LVJ82_15685 PF01867 CRISPR associated protein Cas1 LVJ82_15700 PF09614 CRISPR-associated protein (Cas_Csy2) LVJ82_15705 PF09615 CRISPR-associated protein (Cas_Csy3) LVJ82_15710 PF09618 CRISPR-associated protein (Cas_Csy4) LVJ82_15730 PF00120 Glutamine synthetase, catalytic domain LVJ82_15730 PF03951 Glutamine synthetase, beta-Grasp domain LVJ82_15735 PF01488 Shikimate / quinate 5-dehydrogenase LVJ82_15735 PF08501 Shikimate dehydrogenase substrate binding domain LVJ82_15735 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LVJ82_15740 PF00912 Transglycosylase LVJ82_15750 PF01070 FMN-dependent dehydrogenase LVJ82_15760 PF01699 Sodium/calcium exchanger protein LVJ82_15765 PF05173 Dihydrodipicolinate reductase, C-terminus LVJ82_15765 PF01113 Dihydrodipicolinate reductase, N-terminus LVJ82_15770 PF04355 SmpA / OmlA family LVJ82_15775 PF01475 Ferric uptake regulator family LVJ82_15780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LVJ82_15785 PF00132 Bacterial transferase hexapeptide (six repeats) LVJ82_15785 PF14602 Hexapeptide repeat of succinyl-transferase LVJ82_15785 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LVJ82_15810 PF13593 SBF-like CPA transporter family (DUF4137) LVJ82_15820 PF01435 Peptidase family M48 LVJ82_15825 PF05544 Proline racemase LVJ82_15830 PF02678 Pirin LVJ82_15830 PF05726 Pirin C-terminal cupin domain LVJ82_15845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LVJ82_15845 PF00205 Thiamine pyrophosphate enzyme, central domain LVJ82_15845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LVJ82_15850 PF10369 Small subunit of acetolactate synthase LVJ82_15855 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LVJ82_15855 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LVJ82_15860 PF02390 Putative methyltransferase LVJ82_15865 PF03129 Anticodon binding domain LVJ82_15865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LVJ82_15865 PF04073 Aminoacyl-tRNA editing domain LVJ82_15870 PF01966 HD domain LVJ82_15875 PF00849 RNA pseudouridylate synthase LVJ82_15875 PF01479 S4 domain LVJ82_15885 PF00925 GTP cyclohydrolase II LVJ82_15940 PF00296 Luciferase-like monooxygenase LVJ82_15945 PF18027 Cytosolic carboxypeptidase N-terminal domain LVJ82_15945 PF00246 Zinc carboxypeptidase LVJ82_15955 PF07879 PHB/PHA accumulation regulator DNA-binding domain LVJ82_15955 PF05233 PHB accumulation regulatory domain LVJ82_15965 PF00679 Elongation factor G C-terminus LVJ82_15965 PF00009 Elongation factor Tu GTP binding domain LVJ82_15965 PF03144 Elongation factor Tu domain 2 LVJ82_15965 PF06421 GTP-binding protein LepA C-terminus LVJ82_15970 PF10502 Signal peptidase, peptidase S26 LVJ82_15975 PF00035 Double-stranded RNA binding motif LVJ82_15975 PF14622 Ribonuclease-III-like LVJ82_15980 PF07650 KH domain LVJ82_15980 PF01926 50S ribosome-binding GTPase LVJ82_15995 PF05494 MlaC protein LVJ82_16000 PF05195 Aminopeptidase P, N-terminal domain LVJ82_16000 PF00557 Metallopeptidase family M24 LVJ82_16020 PF01709 Transcriptional regulator LVJ82_16025 PF04325 Protein of unknown function (DUF465) LVJ82_16035 PF00005 ABC transporter LVJ82_16040 PF00950 ABC 3 transport family LVJ82_16045 PF01297 Zinc-uptake complex component A periplasmic LVJ82_16050 PF01218 Coproporphyrinogen III oxidase LVJ82_16055 PF13660 Domain of unknown function (DUF4147) LVJ82_16055 PF05161 MOFRL family LVJ82_16060 PF00753 Metallo-beta-lactamase superfamily LVJ82_16060 PF16123 Hydroxyacylglutathione hydrolase C-terminus LVJ82_16065 PF03466 LysR substrate binding domain LVJ82_16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_16085 PF12697 Alpha/beta hydrolase family LVJ82_16090 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LVJ82_16090 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LVJ82_16095 PF01219 Prokaryotic diacylglycerol kinase LVJ82_16105 PF05567 Neisseria PilC beta-propeller domain LVJ82_16110 PF00860 Permease family LVJ82_16115 PF02660 Glycerol-3-phosphate acyltransferase LVJ82_16130 PF00535 Glycosyl transferase family 2 LVJ82_16135 PF14883 Hypothetical glycosyl hydrolase family 13 LVJ82_16135 PF01522 Polysaccharide deacetylase LVJ82_16155 PF00005 ABC transporter LVJ82_16165 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_16180 PF05861 Bacterial phosphonate metabolism protein (PhnI) LVJ82_16185 PF06007 Phosphonate metabolism protein PhnJ LVJ82_16190 PF00005 ABC transporter LVJ82_16195 PF00005 ABC transporter LVJ82_16200 PF07969 Amidohydrolase family LVJ82_16210 PF12706 Beta-lactamase superfamily domain LVJ82_16220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LVJ82_16220 PF02770 Acyl-CoA dehydrogenase, middle domain LVJ82_16220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LVJ82_16225 PF01039 Carboxyl transferase domain LVJ82_16230 PF00378 Enoyl-CoA hydratase/isomerase LVJ82_16235 PF02785 Biotin carboxylase C-terminal domain LVJ82_16235 PF00289 Biotin carboxylase, N-terminal domain LVJ82_16235 PF00364 Biotin-requiring enzyme LVJ82_16235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LVJ82_16240 PF00682 HMGL-like LVJ82_16245 PF00501 AMP-binding enzyme LVJ82_16245 PF13193 AMP-binding enzyme C-terminal domain LVJ82_16275 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LVJ82_16275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LVJ82_16280 PF01136 Peptidase family U32 LVJ82_16280 PF16325 Peptidase family U32 C-terminal domain LVJ82_16285 PF00324 Amino acid permease LVJ82_16290 PF03485 Arginyl tRNA synthetase N terminal domain LVJ82_16290 PF05746 DALR anticodon binding domain LVJ82_16290 PF00750 tRNA synthetases class I (R) LVJ82_16300 PF08238 Sel1 repeat LVJ82_16305 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LVJ82_16310 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_16310 PF03797 Autotransporter beta-domain LVJ82_16310 PF16168 Adhesin of bacterial autotransporter system, probable stalk LVJ82_16325 PF00375 Sodium:dicarboxylate symporter family LVJ82_16330 PF01497 Periplasmic binding protein LVJ82_16335 PF00005 ABC transporter LVJ82_16340 PF01032 FecCD transport family LVJ82_16345 PF01032 FecCD transport family LVJ82_16350 PF00892 EamA-like transporter family LVJ82_16355 PF07660 Secretin and TonB N terminus short domain LVJ82_16355 PF00593 TonB dependent receptor LVJ82_16355 PF07715 TonB-dependent Receptor Plug Domain LVJ82_16365 PF17755 UvrA DNA-binding domain LVJ82_16365 PF17760 UvrA interaction domain LVJ82_16370 PF01494 FAD binding domain LVJ82_16395 PF00270 DEAD/DEAH box helicase LVJ82_16395 PF11898 Domain of unknown function (DUF3418) LVJ82_16395 PF04408 Helicase associated domain (HA2) LVJ82_16395 PF00271 Helicase conserved C-terminal domain LVJ82_16395 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LVJ82_16400 PF12034 Domain of unknown function (DUF3520) LVJ82_16400 PF00092 von Willebrand factor type A domain LVJ82_16400 PF12450 von Willebrand factor LVJ82_16405 PF00144 Beta-lactamase LVJ82_16410 PF02554 Carbon starvation protein CstA LVJ82_16410 PF13722 5TM C-terminal transporter carbon starvation CstA LVJ82_16425 PF00893 Small Multidrug Resistance protein LVJ82_16430 PF02803 Thiolase, C-terminal domain LVJ82_16430 PF00108 Thiolase, N-terminal domain LVJ82_16435 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LVJ82_16440 PF00293 NUDIX domain LVJ82_16450 PF01741 Large-conductance mechanosensitive channel, MscL LVJ82_16460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LVJ82_16465 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_16480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LVJ82_16480 PF02403 Seryl-tRNA synthetase N-terminal domain LVJ82_16490 PF01895 PhoU domain LVJ82_16510 PF03880 DbpA RNA binding domain LVJ82_16510 PF00270 DEAD/DEAH box helicase LVJ82_16510 PF12343 Cold shock protein DEAD box A LVJ82_16510 PF00271 Helicase conserved C-terminal domain LVJ82_16515 PF10672 S-adenosylmethionine-dependent methyltransferase LVJ82_16520 PF01177 Asp/Glu/Hydantoin racemase LVJ82_16530 PF00403 Heavy-metal-associated domain LVJ82_16545 PF08521 Two-component sensor kinase N-terminal LVJ82_16545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_16545 PF00512 His Kinase A (phospho-acceptor) domain LVJ82_16550 PF00072 Response regulator receiver domain LVJ82_16550 PF00486 Transcriptional regulatory protein, C terminal LVJ82_16555 PF00667 FAD binding domain LVJ82_16555 PF00258 Flavodoxin LVJ82_16555 PF00175 Oxidoreductase NAD-binding domain LVJ82_16560 PF07690 Major Facilitator Superfamily LVJ82_16565 PF09278 MerR, DNA binding LVJ82_16565 PF00376 MerR family regulatory protein LVJ82_16570 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_16575 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_16575 PF12911 N-terminal TM domain of oligopeptide transport permease C LVJ82_16585 PF07670 Nucleoside recognition LVJ82_16595 PF03009 Glycerophosphoryl diester phosphodiesterase family LVJ82_16600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LVJ82_16600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LVJ82_16620 PF00155 Aminotransferase class I and II LVJ82_16625 PF03180 NLPA lipoprotein LVJ82_16650 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_16660 PF00528 Binding-protein-dependent transport system inner membrane component LVJ82_16665 PF00497 Bacterial extracellular solute-binding proteins, family 3 LVJ82_16670 PF00005 ABC transporter LVJ82_16680 PF13454 FAD-NAD(P)-binding LVJ82_16695 PF02753 Pili assembly chaperone PapD, C-terminal domain LVJ82_16695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LVJ82_16710 PF05860 haemagglutination activity domain LVJ82_16790 PF00589 Phage integrase family LVJ82_16825 PF00186 Dihydrofolate reductase LVJ82_16865 PF00436 Single-strand binding protein family LVJ82_17060 PF09669 Phage regulatory protein Rha (Phage_pRha) LVJ82_17060 PF10549 ORF11CD3 domain LVJ82_17075 PF01551 Peptidase family M23 LVJ82_17185 PF04381 Putative exonuclease, RdgC LVJ82_17195 PF00149 Calcineurin-like phosphoesterase LVJ82_17370 PF10548 P22AR C-terminal domain LVJ82_17370 PF08346 AntA/AntB antirepressor LVJ82_17395 PF00004 ATPase family associated with various cellular activities (AAA) LVJ82_17425 PF00589 Phage integrase family LVJ82_17435 PF13742 OB-fold nucleic acid binding domain LVJ82_17435 PF02601 Exonuclease VII, large subunit LVJ82_17440 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LVJ82_17445 PF03966 Trm112p-like protein LVJ82_17450 PF02348 Cytidylyltransferase LVJ82_17455 PF05191 Adenylate kinase, active site lid LVJ82_17470 PF13361 UvrD-like helicase C-terminal domain LVJ82_17470 PF00580 UvrD/REP helicase N-terminal domain LVJ82_17475 PF00300 Histidine phosphatase superfamily (branch 1) LVJ82_17480 PF01966 HD domain LVJ82_17480 PF08335 GlnD PII-uridylyltransferase LVJ82_17485 PF12627 Probable RNA and SrmB- binding site of polymerase A LVJ82_17485 PF01966 HD domain LVJ82_17485 PF01743 Poly A polymerase head domain LVJ82_17490 PF02653 Branched-chain amino acid transport system / permease component LVJ82_17495 PF11862 Domain of unknown function (DUF3382) LVJ82_17495 PF02653 Branched-chain amino acid transport system / permease component LVJ82_17500 PF00005 ABC transporter LVJ82_17500 PF12399 Branched-chain amino acid ATP-binding cassette transporter LVJ82_17505 PF00005 ABC transporter LVJ82_17535 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_17540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LVJ82_17550 PF01063 Amino-transferase class IV LVJ82_17560 PF18073 Rubredoxin metal binding domain LVJ82_17565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LVJ82_17570 PF00294 pfkB family carbohydrate kinase LVJ82_17575 PF01370 NAD dependent epimerase/dehydratase family LVJ82_17585 PF00255 Glutathione peroxidase LVJ82_17600 PF02371 Transposase IS116/IS110/IS902 family LVJ82_17600 PF01548 Transposase LVJ82_17655 PF03553 Na+/H+ antiporter family LVJ82_17660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LVJ82_17670 PF00375 Sodium:dicarboxylate symporter family LVJ82_17675 PF05231 MASE1 LVJ82_17675 PF07730 Histidine kinase LVJ82_17675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_17680 PF00196 Bacterial regulatory proteins, luxR family LVJ82_17680 PF00072 Response regulator receiver domain LVJ82_17760 PF00775 Dioxygenase LVJ82_17760 PF04444 Catechol dioxygenase N terminus LVJ82_17765 PF00465 Iron-containing alcohol dehydrogenase LVJ82_17770 PF00171 Aldehyde dehydrogenase family LVJ82_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_17785 PF03466 LysR substrate binding domain LVJ82_17795 PF00293 NUDIX domain LVJ82_17805 PF08245 Mur ligase middle domain LVJ82_17805 PF02875 Mur ligase family, glutamate ligase domain LVJ82_17805 PF01225 Mur ligase family, catalytic domain LVJ82_17810 PF01965 DJ-1/PfpI family LVJ82_17810 PF12833 Helix-turn-helix domain LVJ82_17820 PF17806 Sarcosine oxidase A3 domain LVJ82_17820 PF08669 Glycine cleavage T-protein C-terminal barrel domain LVJ82_17820 PF01571 Aminomethyltransferase folate-binding domain LVJ82_17820 PF07992 Pyridine nucleotide-disulphide oxidoreductase LVJ82_17830 PF01266 FAD dependent oxidoreductase LVJ82_17835 PF00551 Formyl transferase LVJ82_17845 PF16658 Class II release factor RF3, C-terminal domain LVJ82_17845 PF00009 Elongation factor Tu GTP binding domain LVJ82_17845 PF03144 Elongation factor Tu domain 2 LVJ82_17850 PF00226 DnaJ domain LVJ82_17850 PF01556 DnaJ C terminal domain LVJ82_17850 PF00684 DnaJ central domain LVJ82_17855 PF07883 Cupin domain LVJ82_17855 PF01381 Helix-turn-helix LVJ82_17860 PF03594 Benzoate membrane transport protein LVJ82_17865 PF01938 TRAM domain LVJ82_17865 PF05958 tRNA (Uracil-5-)-methyltransferase LVJ82_17875 PF02627 Carboxymuconolactone decarboxylase family LVJ82_17880 PF00849 RNA pseudouridylate synthase LVJ82_17880 PF01479 S4 domain LVJ82_17885 PF04079 Segregation and condensation complex subunit ScpB LVJ82_17890 PF01926 50S ribosome-binding GTPase LVJ82_17895 PF03668 P-loop ATPase protein family LVJ82_17900 PF02603 HPr Serine kinase N terminus LVJ82_17900 PF07475 HPr Serine kinase C-terminal domain LVJ82_17905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LVJ82_17910 PF01040 UbiA prenyltransferase family LVJ82_17935 PF01266 FAD dependent oxidoreductase LVJ82_17945 PF00206 Lyase LVJ82_17945 PF14698 Argininosuccinate lyase C-terminal LVJ82_17950 PF07694 5TMR of 5TMR-LYT LVJ82_17950 PF06580 Histidine kinase LVJ82_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LVJ82_17960 PF00588 SpoU rRNA Methylase family LVJ82_17960 PF08032 RNA 2'-O ribose methyltransferase substrate binding LVJ82_17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LVJ82_17970 PF03466 LysR substrate binding domain LVJ82_17995 PF03372 Endonuclease/Exonuclease/phosphatase family LVJ82_18000 PF00156 Phosphoribosyl transferase domain LVJ82_18005 PF01370 NAD dependent epimerase/dehydratase family LVJ82_18005 PF08338 Domain of unknown function (DUF1731) LVJ82_18020 PF01790 Prolipoprotein diacylglyceryl transferase LVJ82_18025 PF00842 Alanine racemase, C-terminal domain LVJ82_18025 PF01168 Alanine racemase, N-terminal domain LVJ82_18030 PF00842 Alanine racemase, C-terminal domain LVJ82_18030 PF01168 Alanine racemase, N-terminal domain LVJ82_18045 PF02567 Phenazine biosynthesis-like protein LVJ82_18060 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) LVJ82_18070 PF03691 Uncharacterised protein family (UPF0167) LVJ82_18075 PF00579 tRNA synthetases class I (W and Y) LVJ82_18090 PF08497 Radical SAM N-terminal LVJ82_18090 PF11842 Domain of unknown function (DUF3362) LVJ82_18090 PF04055 Radical SAM superfamily LVJ82_18095 PF08240 Alcohol dehydrogenase GroES-like domain LVJ82_18095 PF00107 Zinc-binding dehydrogenase LVJ82_18105 PF00005 ABC transporter LVJ82_18110 PF13533 Biotin-lipoyl like LVJ82_18115 PF02321 Outer membrane efflux protein LVJ82_18125 PF00149 Calcineurin-like phosphoesterase LVJ82_18130 PF00885 6,7-dimethyl-8-ribityllumazine synthase LVJ82_18135 PF01029 NusB family LVJ82_18150 PF00180 Isocitrate/isopropylmalate dehydrogenase LVJ82_18155 PF03971 Monomeric isocitrate dehydrogenase LVJ82_18160 PF00849 RNA pseudouridylate synthase LVJ82_18180 PF00753 Metallo-beta-lactamase superfamily LVJ82_18180 PF16123 Hydroxyacylglutathione hydrolase C-terminus LVJ82_18185 PF01370 NAD dependent epimerase/dehydratase family LVJ82_18190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LVJ82_18190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LVJ82_18195 PF03755 YicC-like family, N-terminal region LVJ82_18195 PF08340 Domain of unknown function (DUF1732) LVJ82_18200 PF03725 3' exoribonuclease family, domain 2 LVJ82_18200 PF01138 3' exoribonuclease family, domain 1 LVJ82_18205 PF00696 Amino acid kinase family LVJ82_18205 PF01842 ACT domain LVJ82_18205 PF13840 ACT domain LVJ82_18210 PF01139 tRNA-splicing ligase RtcB LVJ82_18220 PF00392 Bacterial regulatory proteins, gntR family LVJ82_18220 PF07702 UTRA domain LVJ82_18225 PF00221 Aromatic amino acid lyase LVJ82_18230 PF17391 Urocanase N-terminal domain LVJ82_18230 PF01175 Urocanase Rossmann-like domain LVJ82_18230 PF17392 Urocanase C-terminal domain LVJ82_18235 PF01979 Amidohydrolase family LVJ82_18240 PF00491 Arginase family LVJ82_18250 PF00472 RF-1 domain LVJ82_18275 PF04355 SmpA / OmlA family LVJ82_18275 PF00691 OmpA family LVJ82_18280 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_18280 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_18280 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_18280 PF03895 YadA-like membrane anchor domain LVJ82_18285 PF03895 YadA-like membrane anchor domain LVJ82_18285 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_18285 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_18290 PF06965 Na+/H+ antiporter 1 LVJ82_18315 PF13419 Haloacid dehalogenase-like hydrolase LVJ82_18320 PF04305 Protein of unknown function (DUF455) LVJ82_18330 PF02540 NAD synthase LVJ82_18335 PF03548 Outer membrane lipoprotein carrier protein LolA LVJ82_18345 PF05088 Bacterial NAD-glutamate dehydrogenase LVJ82_18350 PF00585 C-terminal regulatory domain of Threonine dehydratase LVJ82_18350 PF00291 Pyridoxal-phosphate dependent enzyme LVJ82_18355 PF07943 Penicillin-binding protein 5, C-terminal domain LVJ82_18355 PF00768 D-alanyl-D-alanine carboxypeptidase LVJ82_18365 PF00199 Catalase LVJ82_18365 PF06628 Catalase-related immune-responsive LVJ82_18375 PF07690 Major Facilitator Superfamily LVJ82_18380 PF01380 SIS domain LVJ82_18380 PF02685 Glucokinase LVJ82_18380 PF01418 Helix-turn-helix domain, rpiR family LVJ82_18385 PF02685 Glucokinase LVJ82_18390 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LVJ82_18395 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LVJ82_18395 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LVJ82_18400 PF00920 Dehydratase family LVJ82_18405 PF01081 KDPG and KHG aldolase LVJ82_18410 PF05662 Coiled stalk of trimeric autotransporter adhesin LVJ82_18410 PF05658 Head domain of trimeric autotransporter adhesin LVJ82_18410 PF13018 Extended Signal Peptide of Type V secretion system LVJ82_18410 PF03895 YadA-like membrane anchor domain LVJ82_18415 PF02913 FAD linked oxidases, C-terminal domain LVJ82_18415 PF01565 FAD binding domain LVJ82_18430 PF00696 Amino acid kinase family LVJ82_18445 PF07969 Amidohydrolase family LVJ82_18465 PF03652 Holliday junction resolvase LVJ82_18470 PF02622 Uncharacterized ACR, COG1678 LVJ82_18475 PF01676 Metalloenzyme superfamily LVJ82_18475 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LVJ82_18480 PF01551 Peptidase family M23 LVJ82_18485 PF03572 Peptidase family S41 LVJ82_18485 PF13180 PDZ domain LVJ82_18490 PF14437 MafB19-like deaminase