locus-tag class description AKJ08_0001 PF02934 GatB/GatE catalytic domain AKJ08_0001 PF02637 GatB domain AKJ08_0005 PF00829 Ribosomal prokaryotic L21 protein AKJ08_0006 PF01016 Ribosomal L27 protein AKJ08_0007 PF01018 GTP1/OBG AKJ08_0007 PF01926 50S ribosome-binding GTPase AKJ08_0010 PF00459 Inositol monophosphatase family AKJ08_0011 PF00919 Uncharacterized protein family UPF0004 AKJ08_0011 PF18693 TRAM domain AKJ08_0011 PF04055 Radical SAM superfamily AKJ08_0012 PF04461 Protein of unknown function (DUF520) AKJ08_0013 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AKJ08_0013 PF00753 Metallo-beta-lactamase superfamily AKJ08_0013 PF17770 Ribonuclease J C-terminal domain AKJ08_0016 PF00207 Alpha-2-macroglobulin family AKJ08_0016 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AKJ08_0016 PF01835 MG2 domain AKJ08_0016 PF07703 Alpha-2-macroglobulin bait region domain AKJ08_0017 PF01835 MG2 domain AKJ08_0017 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AKJ08_0017 PF07703 Alpha-2-macroglobulin bait region domain AKJ08_0017 PF00207 Alpha-2-macroglobulin family AKJ08_0018 PF00580 UvrD/REP helicase N-terminal domain AKJ08_0018 PF13361 UvrD-like helicase C-terminal domain AKJ08_0021 PF00483 Nucleotidyl transferase AKJ08_0024 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_0024 PF05230 MASE2 domain AKJ08_0027 PF00534 Glycosyl transferases group 1 AKJ08_0027 PF08323 Starch synthase catalytic domain AKJ08_0028 PF03471 Transporter associated domain AKJ08_0028 PF00571 CBS domain AKJ08_0029 PF05547 Immune inhibitor A peptidase M6 AKJ08_0029 PF00801 PKD domain AKJ08_0031 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AKJ08_0033 PF00586 AIR synthase related protein, N-terminal domain AKJ08_0033 PF02769 AIR synthase related protein, C-terminal domain AKJ08_0033 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AKJ08_0035 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AKJ08_0035 PF02769 AIR synthase related protein, C-terminal domain AKJ08_0035 PF00586 AIR synthase related protein, N-terminal domain AKJ08_0043 PF13333 Integrase core domain AKJ08_0043 PF00665 Integrase core domain AKJ08_0043 PF13276 HTH-like domain AKJ08_0044 PF05547 Immune inhibitor A peptidase M6 AKJ08_0044 PF00801 PKD domain AKJ08_0045 PF05547 Immune inhibitor A peptidase M6 AKJ08_0045 PF00801 PKD domain AKJ08_0051 PF00156 Phosphoribosyl transferase domain AKJ08_0053 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal AKJ08_0053 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal AKJ08_0055 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AKJ08_0055 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AKJ08_0055 PF10531 SLBB domain AKJ08_0056 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AKJ08_0057 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AKJ08_0058 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AKJ08_0058 PF00361 Proton-conducting membrane transporter AKJ08_0059 PF00361 Proton-conducting membrane transporter AKJ08_0059 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AKJ08_0060 PF00361 Proton-conducting membrane transporter AKJ08_0062 PF02954 Bacterial regulatory protein, Fis family AKJ08_0062 PF00158 Sigma-54 interaction domain AKJ08_0062 PF00072 Response regulator receiver domain AKJ08_0063 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0064 PF00156 Phosphoribosyl transferase domain AKJ08_0065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AKJ08_0065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AKJ08_0066 PF01430 Hsp33 protein AKJ08_0073 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AKJ08_0073 PF02403 Seryl-tRNA synthetase N-terminal domain AKJ08_0074 PF14437 MafB19-like deaminase AKJ08_0075 PF12169 DNA polymerase III subunits gamma and tau domain III AKJ08_0075 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AKJ08_0075 PF12170 DNA polymerase III tau subunit V interacting with alpha AKJ08_0076 PF02575 YbaB/EbfC DNA-binding family AKJ08_0077 PF00633 Helix-hairpin-helix motif AKJ08_0077 PF02132 RecR protein AKJ08_0077 PF13662 Toprim domain AKJ08_0079 PF11941 Domain of unknown function (DUF3459) AKJ08_0079 PF00128 Alpha amylase, catalytic domain AKJ08_0080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AKJ08_0081 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AKJ08_0081 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AKJ08_0081 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AKJ08_0087 PF17946 RecC C-terminal domain AKJ08_0088 PF12705 PD-(D/E)XK nuclease superfamily AKJ08_0088 PF00580 UvrD/REP helicase N-terminal domain AKJ08_0088 PF13361 UvrD-like helicase C-terminal domain AKJ08_0089 PF13538 UvrD-like helicase C-terminal domain AKJ08_0093 PF12706 Beta-lactamase superfamily domain AKJ08_0094 PF09335 SNARE associated Golgi protein AKJ08_0098 PF13677 Membrane MotB of proton-channel complex MotA/MotB AKJ08_0098 PF00691 OmpA family AKJ08_0099 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AKJ08_0099 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AKJ08_0100 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AKJ08_0102 PF00171 Aldehyde dehydrogenase family AKJ08_0103 PF00535 Glycosyl transferase family 2 AKJ08_0104 PF00884 Sulfatase AKJ08_0105 PF00343 Carbohydrate phosphorylase AKJ08_0105 PF11897 Protein of unknown function (DUF3417) AKJ08_0106 PF00171 Aldehyde dehydrogenase family AKJ08_0107 PF00486 Transcriptional regulatory protein, C terminal AKJ08_0107 PF00072 Response regulator receiver domain AKJ08_0116 PF02261 Aspartate decarboxylase AKJ08_0117 PF01470 Pyroglutamyl peptidase AKJ08_0122 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_0125 PF01207 Dihydrouridine synthase (Dus) AKJ08_0126 PF03649 Uncharacterised protein family (UPF0014) AKJ08_0127 PF00005 ABC transporter AKJ08_0129 PF00437 Type II/IV secretion system protein AKJ08_0130 PF01039 Carboxyl transferase domain AKJ08_0131 PF01642 Methylmalonyl-CoA mutase AKJ08_0132 PF01642 Methylmalonyl-CoA mutase AKJ08_0132 PF02310 B12 binding domain AKJ08_0134 PF02702 Osmosensitive K+ channel His kinase sensor domain AKJ08_0134 PF13493 Domain of unknown function (DUF4118) AKJ08_0134 PF13492 GAF domain AKJ08_0134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0134 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0135 PF02669 K+-transporting ATPase, c chain AKJ08_0137 PF03814 Potassium-transporting ATPase A subunit AKJ08_0138 PF02785 Biotin carboxylase C-terminal domain AKJ08_0138 PF00289 Biotin carboxylase, N-terminal domain AKJ08_0138 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AKJ08_0139 PF00364 Biotin-requiring enzyme AKJ08_0146 PF05681 Fumarate hydratase (Fumerase) AKJ08_0146 PF05683 Fumarase C-terminus AKJ08_0147 PF05681 Fumarate hydratase (Fumerase) AKJ08_0147 PF05683 Fumarase C-terminus AKJ08_0149 PF00365 Phosphofructokinase AKJ08_0150 PF00849 RNA pseudouridylate synthase AKJ08_0150 PF01479 S4 domain AKJ08_0151 PF12626 Polymerase A arginine-rich C-terminus AKJ08_0151 PF01743 Poly A polymerase head domain AKJ08_0151 PF12627 Probable RNA and SrmB- binding site of polymerase A AKJ08_0153 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AKJ08_0153 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AKJ08_0154 PF00180 Isocitrate/isopropylmalate dehydrogenase AKJ08_0154 PF18324 Hypothetical protein TT1725 AKJ08_0155 PF08669 Glycine cleavage T-protein C-terminal barrel domain AKJ08_0155 PF01571 Aminomethyltransferase folate-binding domain AKJ08_0162 PF00202 Aminotransferase class-III AKJ08_0163 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AKJ08_0163 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AKJ08_0165 PF00759 Glycosyl hydrolase family 9 AKJ08_0165 PF02927 Cellulase N-terminal ig-like domain AKJ08_0165 PF02013 Cellulose or protein binding domain AKJ08_0165 PF00553 Cellulose binding domain AKJ08_0165 PF00801 PKD domain AKJ08_0167 PF00684 DnaJ central domain AKJ08_0167 PF00226 DnaJ domain AKJ08_0167 PF01556 DnaJ C terminal domain AKJ08_0168 PF00012 Hsp70 protein AKJ08_0171 PF07993 Male sterility protein AKJ08_0171 PF00550 Phosphopantetheine attachment site AKJ08_0171 PF00668 Condensation domain AKJ08_0171 PF00501 AMP-binding enzyme AKJ08_0171 PF13193 AMP-binding enzyme C-terminal domain AKJ08_0172 PF01121 Dephospho-CoA kinase AKJ08_0173 PF01926 50S ribosome-binding GTPase AKJ08_0185 PF01272 Transcription elongation factor, GreA/GreB, C-term AKJ08_0185 PF03449 Transcription elongation factor, N-terminal AKJ08_0187 PF00684 DnaJ central domain AKJ08_0187 PF01556 DnaJ C terminal domain AKJ08_0187 PF00226 DnaJ domain AKJ08_0188 PF08486 Stage II sporulation protein AKJ08_0191 PF02347 Glycine cleavage system P-protein AKJ08_0192 PF02347 Glycine cleavage system P-protein AKJ08_0193 PF02347 Glycine cleavage system P-protein AKJ08_0194 PF01597 Glycine cleavage H-protein AKJ08_0195 PF01571 Aminomethyltransferase folate-binding domain AKJ08_0195 PF08669 Glycine cleavage T-protein C-terminal barrel domain AKJ08_0197 PF13635 Domain of unknown function (DUF4143) AKJ08_0197 PF13173 AAA domain AKJ08_0198 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AKJ08_0198 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AKJ08_0206 PF00578 AhpC/TSA family AKJ08_0207 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AKJ08_0207 PF01578 Cytochrome C assembly protein AKJ08_0208 PF03100 CcmE AKJ08_0210 PF01578 Cytochrome C assembly protein AKJ08_0212 PF00005 ABC transporter AKJ08_0213 PF01625 Peptide methionine sulfoxide reductase AKJ08_0215 PF00348 Polyprenyl synthetase AKJ08_0216 PF01209 ubiE/COQ5 methyltransferase family AKJ08_0217 PF02441 Flavoprotein AKJ08_0219 PF04055 Radical SAM superfamily AKJ08_0220 PF04055 Radical SAM superfamily AKJ08_0222 PF01040 UbiA prenyltransferase family AKJ08_0223 PF00793 DAHP synthetase I family AKJ08_0223 PF18152 DAHP synthase ferredoxin-like domain AKJ08_0224 PF02621 Menaquinone biosynthesis AKJ08_0227 PF00534 Glycosyl transferases group 1 AKJ08_0227 PF13439 Glycosyltransferase Family 4 AKJ08_0228 PF00535 Glycosyl transferase family 2 AKJ08_0229 PF00733 Asparagine synthase AKJ08_0229 PF13537 Glutamine amidotransferase domain AKJ08_0230 PF01757 Acyltransferase family AKJ08_0242 PF13537 Glutamine amidotransferase domain AKJ08_0242 PF00733 Asparagine synthase AKJ08_0243 PF13193 AMP-binding enzyme C-terminal domain AKJ08_0243 PF00501 AMP-binding enzyme AKJ08_0244 PF02540 NAD synthase AKJ08_0245 PF02397 Bacterial sugar transferase AKJ08_0250 PF00830 Ribosomal L28 family AKJ08_0252 PF00551 Formyl transferase AKJ08_0253 PF00586 AIR synthase related protein, N-terminal domain AKJ08_0253 PF02769 AIR synthase related protein, C-terminal domain AKJ08_0254 PF01168 Alanine racemase, N-terminal domain AKJ08_0258 PF07690 Major Facilitator Superfamily AKJ08_0260 PF01039 Carboxyl transferase domain AKJ08_0260 PF17848 Acetyl-coA carboxylase zinc finger domain AKJ08_0262 PF02875 Mur ligase family, glutamate ligase domain AKJ08_0262 PF08245 Mur ligase middle domain AKJ08_0263 PF00561 alpha/beta hydrolase fold AKJ08_0265 PF04453 LPS transport system D AKJ08_0265 PF03968 OstA-like protein AKJ08_0266 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AKJ08_0266 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AKJ08_0266 PF01842 ACT domain AKJ08_0267 PF00266 Aminotransferase class-V AKJ08_0268 PF00266 Aminotransferase class-V AKJ08_0270 PF00709 Adenylosuccinate synthetase AKJ08_0271 PF02699 Preprotein translocase subunit AKJ08_0272 PF07549 SecD/SecF GG Motif AKJ08_0272 PF02355 Protein export membrane protein AKJ08_0273 PF07549 SecD/SecF GG Motif AKJ08_0273 PF02355 Protein export membrane protein AKJ08_0277 PF07681 DoxX AKJ08_0280 PF17768 RecJ OB domain AKJ08_0280 PF01368 DHH family AKJ08_0280 PF02272 DHHA1 domain AKJ08_0280 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AKJ08_0281 PF03795 YCII-related domain AKJ08_0283 PF08281 Sigma-70, region 4 AKJ08_0283 PF04542 Sigma-70 region 2 AKJ08_0285 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AKJ08_0290 PF02938 GAD domain AKJ08_0290 PF00152 tRNA synthetases class II (D, K and N) AKJ08_0290 PF01336 OB-fold nucleic acid binding domain AKJ08_0291 PF04324 BFD-like [2Fe-2S] binding domain AKJ08_0291 PF01266 FAD dependent oxidoreductase AKJ08_0294 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AKJ08_0294 PF01565 FAD binding domain AKJ08_0295 PF00781 Diacylglycerol kinase catalytic domain AKJ08_0296 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AKJ08_0296 PF01243 Pyridoxamine 5'-phosphate oxidase AKJ08_0303 PF00271 Helicase conserved C-terminal domain AKJ08_0303 PF00176 SNF2 family N-terminal domain AKJ08_0304 PF02581 Thiamine monophosphate synthase AKJ08_0305 PF05690 Thiazole biosynthesis protein ThiG AKJ08_0309 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AKJ08_0311 PF00155 Aminotransferase class I and II AKJ08_0313 PF01553 Acyltransferase AKJ08_0314 PF00072 Response regulator receiver domain AKJ08_0314 PF01339 CheB methylesterase AKJ08_0315 PF16736 Single Cache-like AKJ08_0315 PF00989 PAS fold AKJ08_0315 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0317 PF00226 DnaJ domain AKJ08_0317 PF01556 DnaJ C terminal domain AKJ08_0319 PF00583 Acetyltransferase (GNAT) family AKJ08_0320 PF01180 Dihydroorotate dehydrogenase AKJ08_0323 PF04055 Radical SAM superfamily AKJ08_0327 PF02565 Recombination protein O C terminal AKJ08_0327 PF11967 Recombination protein O N terminal AKJ08_0328 PF00106 short chain dehydrogenase AKJ08_0329 PF04030 D-arabinono-1,4-lactone oxidase AKJ08_0329 PF01565 FAD binding domain AKJ08_0330 PF01040 UbiA prenyltransferase family AKJ08_0334 PF02881 SRP54-type protein, helical bundle domain AKJ08_0334 PF00448 SRP54-type protein, GTPase domain AKJ08_0335 PF01252 Signal peptidase (SPase) II AKJ08_0338 PF12852 Cupin AKJ08_0338 PF12833 Helix-turn-helix domain AKJ08_0339 PF07690 Major Facilitator Superfamily AKJ08_0340 PF13456 Reverse transcriptase-like AKJ08_0340 PF00300 Histidine phosphatase superfamily (branch 1) AKJ08_0342 PF04539 Sigma-70 region 3 AKJ08_0342 PF03979 Sigma-70 factor, region 1.1 AKJ08_0342 PF04546 Sigma-70, non-essential region AKJ08_0342 PF04545 Sigma-70, region 4 AKJ08_0342 PF04542 Sigma-70 region 2 AKJ08_0342 PF00140 Sigma-70 factor, region 1.2 AKJ08_0343 PF10410 DnaB-helicase binding domain of primase AKJ08_0343 PF08275 DNA primase catalytic core, N-terminal domain AKJ08_0343 PF01807 CHC2 zinc finger AKJ08_0344 PF09424 Yqey-like protein AKJ08_0345 PF01165 Ribosomal protein S21 AKJ08_0347 PF00216 Bacterial DNA-binding protein AKJ08_0348 PF03631 Virulence factor BrkB AKJ08_0349 PF00575 S1 RNA binding domain AKJ08_0349 PF10150 Ribonuclease E/G family AKJ08_0355 PF02390 Putative methyltransferase AKJ08_0357 PF00149 Calcineurin-like phosphoesterase AKJ08_0358 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_0360 PF02687 FtsX-like permease family AKJ08_0360 PF12704 MacB-like periplasmic core domain AKJ08_0360 PF00005 ABC transporter AKJ08_0361 PF00005 ABC transporter AKJ08_0361 PF12704 MacB-like periplasmic core domain AKJ08_0361 PF02687 FtsX-like permease family AKJ08_0363 PF00293 NUDIX domain AKJ08_0369 PF00106 short chain dehydrogenase AKJ08_0371 PF07726 ATPase family associated with various cellular activities (AAA) AKJ08_0371 PF17863 AAA lid domain AKJ08_0372 PF01882 Protein of unknown function DUF58 AKJ08_0374 PF00092 von Willebrand factor type A domain AKJ08_0379 PF02896 PEP-utilising enzyme, TIM barrel domain AKJ08_0379 PF00391 PEP-utilising enzyme, mobile domain AKJ08_0379 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AKJ08_0380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AKJ08_0380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AKJ08_0385 PF00561 alpha/beta hydrolase fold AKJ08_0387 PF01142 tRNA pseudouridine synthase D (TruD) AKJ08_0390 PF06965 Na+/H+ antiporter 1 AKJ08_0390 PF13462 Thioredoxin AKJ08_0391 PF13649 Methyltransferase domain AKJ08_0392 PF00710 Asparaginase, N-terminal AKJ08_0392 PF17763 Glutaminase/Asparaginase C-terminal domain AKJ08_0397 PF01590 GAF domain AKJ08_0397 PF02954 Bacterial regulatory protein, Fis family AKJ08_0397 PF00158 Sigma-54 interaction domain AKJ08_0398 PF05175 Methyltransferase small domain AKJ08_0398 PF17827 PrmC N-terminal domain AKJ08_0403 PF02576 RimP N-terminal domain AKJ08_0403 PF17384 RimP C-terminal SH3 domain AKJ08_0404 PF13184 NusA-like KH domain AKJ08_0404 PF00575 S1 RNA binding domain AKJ08_0404 PF08529 NusA N-terminal domain AKJ08_0406 PF11987 Translation-initiation factor 2 AKJ08_0406 PF00009 Elongation factor Tu GTP binding domain AKJ08_0406 PF04760 Translation initiation factor IF-2, N-terminal region AKJ08_0408 PF02033 Ribosome-binding factor A AKJ08_0409 PF16198 tRNA pseudouridylate synthase B C-terminal domain AKJ08_0409 PF01509 TruB family pseudouridylate synthase (N terminal domain) AKJ08_0410 PF00312 Ribosomal protein S15 AKJ08_0411 PF00575 S1 RNA binding domain AKJ08_0411 PF01138 3' exoribonuclease family, domain 1 AKJ08_0411 PF03725 3' exoribonuclease family, domain 2 AKJ08_0411 PF00013 KH domain AKJ08_0411 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AKJ08_0417 PF00692 dUTPase AKJ08_0421 PF11838 ERAP1-like C-terminal domain AKJ08_0421 PF01433 Peptidase family M1 domain AKJ08_0423 PF11490 DNA polymerase III polC-type N-terminus II AKJ08_0423 PF14579 Helix-hairpin-helix motif AKJ08_0423 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AKJ08_0423 PF07733 Bacterial DNA polymerase III alpha NTPase domain AKJ08_0423 PF02811 PHP domain AKJ08_0423 PF00929 Exonuclease AKJ08_0424 PF00206 Lyase AKJ08_0424 PF10397 Adenylosuccinate lyase C-terminus AKJ08_0425 PF00893 Small Multidrug Resistance protein AKJ08_0426 PF01259 SAICAR synthetase AKJ08_0429 PF03553 Na+/H+ antiporter family AKJ08_0430 PF17820 PDZ domain AKJ08_0430 PF13180 PDZ domain AKJ08_0432 PF00578 AhpC/TSA family AKJ08_0436 PF01871 AMMECR1 AKJ08_0436 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AKJ08_0440 PF00176 SNF2 family N-terminal domain AKJ08_0440 PF00271 Helicase conserved C-terminal domain AKJ08_0440 PF12419 SNF2 Helicase protein AKJ08_0441 PF00293 NUDIX domain AKJ08_0443 PF13193 AMP-binding enzyme C-terminal domain AKJ08_0443 PF16177 Acetyl-coenzyme A synthetase N-terminus AKJ08_0443 PF00501 AMP-binding enzyme AKJ08_0444 PF01351 Ribonuclease HII AKJ08_0445 PF11924 Inverse autotransporter, beta-domain AKJ08_0445 PF09134 Invasin, domain 3 AKJ08_0445 PF02369 Bacterial Ig-like domain (group 1) AKJ08_0448 PF00694 Aconitase C-terminal domain AKJ08_0449 PF01351 Ribonuclease HII AKJ08_0452 PF00330 Aconitase family (aconitate hydratase) AKJ08_0455 PF02803 Thiolase, C-terminal domain AKJ08_0455 PF00108 Thiolase, N-terminal domain AKJ08_0456 PF00171 Aldehyde dehydrogenase family AKJ08_0457 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_0459 PF02566 OsmC-like protein AKJ08_0462 PF00069 Protein kinase domain AKJ08_0464 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_0464 PF00107 Zinc-binding dehydrogenase AKJ08_0465 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_0466 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AKJ08_0466 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AKJ08_0469 PF03949 Malic enzyme, NAD binding domain AKJ08_0469 PF00390 Malic enzyme, N-terminal domain AKJ08_0469 PF01515 Phosphate acetyl/butaryl transferase AKJ08_0479 PF17755 UvrA DNA-binding domain AKJ08_0479 PF17760 UvrA interaction domain AKJ08_0486 PF01916 Deoxyhypusine synthase AKJ08_0489 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0489 PF01627 Hpt domain AKJ08_0489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0489 PF00497 Bacterial extracellular solute-binding proteins, family 3 AKJ08_0489 PF00072 Response regulator receiver domain AKJ08_0493 PF17863 AAA lid domain AKJ08_0493 PF07726 ATPase family associated with various cellular activities (AAA) AKJ08_0494 PF11992 Domain of unknown function (DUF3488) AKJ08_0494 PF13559 Domain of unknown function (DUF4129) AKJ08_0494 PF01841 Transglutaminase-like superfamily AKJ08_0495 PF16326 ABC transporter C-terminal domain AKJ08_0495 PF12848 ABC transporter AKJ08_0495 PF00005 ABC transporter AKJ08_0498 PF02504 Fatty acid synthesis protein AKJ08_0501 PF08331 Domain of unknown function (DUF1730) AKJ08_0502 PF01923 Cobalamin adenosyltransferase AKJ08_0503 PF01555 DNA methylase AKJ08_0505 PF06965 Na+/H+ antiporter 1 AKJ08_0507 PF07478 D-ala D-ala ligase C-terminus AKJ08_0509 PF00072 Response regulator receiver domain AKJ08_0509 PF02954 Bacterial regulatory protein, Fis family AKJ08_0509 PF00158 Sigma-54 interaction domain AKJ08_0510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0510 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0511 PF00873 AcrB/AcrD/AcrF family AKJ08_0514 PF13488 Glycine zipper AKJ08_0514 PF00691 OmpA family AKJ08_0516 PF00753 Metallo-beta-lactamase superfamily AKJ08_0516 PF16123 Hydroxyacylglutathione hydrolase C-terminus AKJ08_0517 PF00330 Aconitase family (aconitate hydratase) AKJ08_0517 PF00694 Aconitase C-terminal domain AKJ08_0519 PF14760 Rnk N-terminus AKJ08_0519 PF01272 Transcription elongation factor, GreA/GreB, C-term AKJ08_0522 PF00303 Thymidylate synthase AKJ08_0523 PF00186 Dihydrofolate reductase AKJ08_0527 PF00374 Nickel-dependent hydrogenase AKJ08_0528 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AKJ08_0528 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AKJ08_0529 PF00586 AIR synthase related protein, N-terminal domain AKJ08_0529 PF02769 AIR synthase related protein, C-terminal domain AKJ08_0530 PF13580 SIS domain AKJ08_0531 PF01924 Hydrogenase formation hypA family AKJ08_0532 PF01455 HupF/HypC family AKJ08_0533 PF07503 HypF finger AKJ08_0533 PF17788 HypF Kae1-like domain AKJ08_0533 PF01300 Telomere recombination AKJ08_0533 PF00708 Acylphosphatase AKJ08_0534 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AKJ08_0535 PF02492 CobW/HypB/UreG, nucleotide-binding domain AKJ08_0536 PF01521 Iron-sulphur cluster biosynthesis AKJ08_0536 PF01106 NifU-like domain AKJ08_0545 PF00486 Transcriptional regulatory protein, C terminal AKJ08_0545 PF00072 Response regulator receiver domain AKJ08_0546 PF00672 HAMP domain AKJ08_0546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0546 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0546 PF13426 PAS domain AKJ08_0549 PF01209 ubiE/COQ5 methyltransferase family AKJ08_0550 PF04293 SpoVR like protein AKJ08_0551 PF04285 Protein of unknown function (DUF444) AKJ08_0552 PF06798 PrkA serine protein kinase C-terminal domain AKJ08_0552 PF08298 PrkA AAA domain AKJ08_0553 PF02424 ApbE family AKJ08_0554 PF03652 Holliday junction resolvase AKJ08_0556 PF01894 Uncharacterised protein family UPF0047 AKJ08_0557 PF17886 HSP20-like domain found in ArsA AKJ08_0557 PF02374 Anion-transporting ATPase AKJ08_0558 PF02374 Anion-transporting ATPase AKJ08_0560 PF13614 AAA domain AKJ08_0561 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AKJ08_0561 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AKJ08_0561 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AKJ08_0564 PF07879 PHB/PHA accumulation regulator DNA-binding domain AKJ08_0564 PF05233 PHB accumulation regulatory domain AKJ08_0566 PF02630 SCO1/SenC AKJ08_0567 PF03781 Sulfatase-modifying factor enzyme 1 AKJ08_0568 PF00355 Rieske [2Fe-2S] domain AKJ08_0572 PF00535 Glycosyl transferase family 2 AKJ08_0576 PF03009 Glycerophosphoryl diester phosphodiesterase family AKJ08_0580 PF01965 DJ-1/PfpI family AKJ08_0584 PF18030 RimK PreATP-grasp domain AKJ08_0584 PF08443 RimK-like ATP-grasp domain AKJ08_0586 PF03572 Peptidase family S41 AKJ08_0586 PF13180 PDZ domain AKJ08_0587 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AKJ08_0587 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AKJ08_0591 PF02272 DHHA1 domain AKJ08_0591 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AKJ08_0591 PF01411 tRNA synthetases class II (A) AKJ08_0593 PF03009 Glycerophosphoryl diester phosphodiesterase family AKJ08_0599 PF00580 UvrD/REP helicase N-terminal domain AKJ08_0599 PF13361 UvrD-like helicase C-terminal domain AKJ08_0600 PF00572 Ribosomal protein L13 AKJ08_0601 PF00380 Ribosomal protein S9/S16 AKJ08_0602 PF00437 Type II/IV secretion system protein AKJ08_0603 PF02631 RecX family AKJ08_0607 PF08239 Bacterial SH3 domain AKJ08_0607 PF01520 N-acetylmuramoyl-L-alanine amidase AKJ08_0608 PF01138 3' exoribonuclease family, domain 1 AKJ08_0608 PF03725 3' exoribonuclease family, domain 2 AKJ08_0609 PF01725 Ham1 family AKJ08_0611 PF05697 Bacterial trigger factor protein (TF) AKJ08_0611 PF05698 Bacterial trigger factor protein (TF) C-terminus AKJ08_0612 PF00574 Clp protease AKJ08_0613 PF06689 ClpX C4-type zinc finger AKJ08_0613 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_0613 PF07724 AAA domain (Cdc48 subfamily) AKJ08_0615 PF02190 ATP-dependent protease La (LON) substrate-binding domain AKJ08_0615 PF05362 Lon protease (S16) C-terminal proteolytic domain AKJ08_0615 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_0618 PF00561 alpha/beta hydrolase fold AKJ08_0619 PF04972 BON domain AKJ08_0619 PF00691 OmpA family AKJ08_0620 PF00723 Glycosyl hydrolases family 15 AKJ08_0622 PF13378 Enolase C-terminal domain-like AKJ08_0622 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AKJ08_0623 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AKJ08_0623 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AKJ08_0623 PF00205 Thiamine pyrophosphate enzyme, central domain AKJ08_0624 PF01565 FAD binding domain AKJ08_0624 PF02913 FAD linked oxidases, C-terminal domain AKJ08_0624 PF13183 4Fe-4S dicluster domain AKJ08_0631 PF00510 Cytochrome c oxidase subunit III AKJ08_0632 PF00510 Cytochrome c oxidase subunit III AKJ08_0632 PF00115 Cytochrome C and Quinol oxidase polypeptide I AKJ08_0633 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AKJ08_0633 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AKJ08_0639 PF13247 4Fe-4S dicluster domain AKJ08_0639 PF00037 4Fe-4S binding domain AKJ08_0640 PF01568 Molydopterin dinucleotide binding domain AKJ08_0640 PF00384 Molybdopterin oxidoreductase AKJ08_0642 PF00156 Phosphoribosyl transferase domain AKJ08_0642 PF01738 Dienelactone hydrolase family AKJ08_0643 PF02811 PHP domain AKJ08_0643 PF14716 Helix-hairpin-helix domain AKJ08_0643 PF14791 DNA polymerase beta thumb AKJ08_0645 PF02779 Transketolase, pyrimidine binding domain AKJ08_0645 PF16870 2-oxoglutarate dehydrogenase C-terminal AKJ08_0645 PF16078 2-oxoglutarate dehydrogenase N-terminus AKJ08_0645 PF00676 Dehydrogenase E1 component AKJ08_0646 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AKJ08_0646 PF00364 Biotin-requiring enzyme AKJ08_0646 PF02817 e3 binding domain AKJ08_0647 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_0647 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AKJ08_0648 PF01068 ATP dependent DNA ligase domain AKJ08_0648 PF13298 DNA polymerase Ligase (LigD) AKJ08_0648 PF04679 ATP dependent DNA ligase C terminal region AKJ08_0650 PF02416 mttA/Hcf106 family AKJ08_0651 PF01218 Coproporphyrinogen III oxidase AKJ08_0652 PF01208 Uroporphyrinogen decarboxylase (URO-D) AKJ08_0656 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_0656 PF12002 MgsA AAA+ ATPase C terminal AKJ08_0656 PF16193 AAA C-terminal domain AKJ08_0657 PF01513 ATP-NAD kinase AKJ08_0658 PF02463 RecF/RecN/SMC N terminal domain AKJ08_0661 PF01476 LysM domain AKJ08_0661 PF08525 Opacity-associated protein A N-terminal motif AKJ08_0661 PF01551 Peptidase family M23 AKJ08_0662 PF01043 SecA preprotein cross-linking domain AKJ08_0662 PF07517 SecA DEAD-like domain AKJ08_0662 PF02810 SEC-C motif AKJ08_0662 PF07516 SecA Wing and Scaffold domain AKJ08_0663 PF00318 Ribosomal protein S2 AKJ08_0664 PF00889 Elongation factor TS AKJ08_0665 PF00696 Amino acid kinase family AKJ08_0666 PF01765 Ribosome recycling factor AKJ08_0669 PF00873 AcrB/AcrD/AcrF family AKJ08_0670 PF13533 Biotin-lipoyl like AKJ08_0672 PF03481 Putative GTP-binding controlling metal-binding AKJ08_0672 PF01300 Telomere recombination AKJ08_0677 PF13567 Domain of unknown function (DUF4131) AKJ08_0677 PF00753 Metallo-beta-lactamase superfamily AKJ08_0677 PF03772 Competence protein AKJ08_0679 PF01791 DeoC/LacD family aldolase AKJ08_0680 PF00591 Glycosyl transferase family, a/b domain AKJ08_0680 PF02885 Glycosyl transferase family, helical bundle domain AKJ08_0680 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AKJ08_0681 PF01048 Phosphorylase superfamily AKJ08_0682 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AKJ08_0683 PF00654 Voltage gated chloride channel AKJ08_0684 PF01687 Riboflavin kinase AKJ08_0684 PF06574 FAD synthetase AKJ08_0685 PF00437 Type II/IV secretion system protein AKJ08_0685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AKJ08_0686 PF00437 Type II/IV secretion system protein AKJ08_0687 PF00482 Type II secretion system (T2SS), protein F AKJ08_0688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0688 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0688 PF00989 PAS fold AKJ08_0689 PF02954 Bacterial regulatory protein, Fis family AKJ08_0689 PF00072 Response regulator receiver domain AKJ08_0689 PF00158 Sigma-54 interaction domain AKJ08_0690 PF05567 Neisseria PilC beta-propeller domain AKJ08_0698 PF14245 Type IV pilin PilA AKJ08_0698 PF07963 Prokaryotic N-terminal methylation motif AKJ08_0699 PF00005 ABC transporter AKJ08_0700 PF00884 Sulfatase AKJ08_0700 PF16347 Domain of unknown function (DUF4976) AKJ08_0701 PF06750 Bacterial Peptidase A24 N-terminal domain AKJ08_0701 PF01478 Type IV leader peptidase family AKJ08_0702 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0703 PF02954 Bacterial regulatory protein, Fis family AKJ08_0703 PF00072 Response regulator receiver domain AKJ08_0703 PF00158 Sigma-54 interaction domain AKJ08_0709 PF11741 AMIN domain AKJ08_0709 PF00263 Bacterial type II and III secretion system protein AKJ08_0709 PF07660 Secretin and TonB N terminus short domain AKJ08_0709 PF03958 Bacterial type II/III secretion system short domain AKJ08_0712 PF08207 Elongation factor P (EF-P) KOW-like domain AKJ08_0712 PF01132 Elongation factor P (EF-P) OB domain AKJ08_0712 PF09285 Elongation factor P, C-terminal AKJ08_0713 PF00364 Biotin-requiring enzyme AKJ08_0714 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AKJ08_0714 PF00289 Biotin carboxylase, N-terminal domain AKJ08_0714 PF02785 Biotin carboxylase C-terminal domain AKJ08_0720 PF07690 Major Facilitator Superfamily AKJ08_0722 PF02541 Ppx/GppA phosphatase family AKJ08_0723 PF04052 TolB amino-terminal domain AKJ08_0723 PF07676 WD40-like Beta Propeller Repeat AKJ08_0725 PF02472 Biopolymer transport protein ExbD/TolR AKJ08_0726 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_0728 PF01177 Asp/Glu/Hydantoin racemase AKJ08_0730 PF00456 Transketolase, thiamine diphosphate binding domain AKJ08_0731 PF02780 Transketolase, C-terminal domain AKJ08_0731 PF02779 Transketolase, pyrimidine binding domain AKJ08_0732 PF00005 ABC transporter AKJ08_0733 PF18075 FtsX extracellular domain AKJ08_0735 PF00561 alpha/beta hydrolase fold AKJ08_0735 PF08386 TAP-like protein AKJ08_0736 PF13180 PDZ domain AKJ08_0736 PF03572 Peptidase family S41 AKJ08_0738 PF00012 Hsp70 protein AKJ08_0739 PF06798 PrkA serine protein kinase C-terminal domain AKJ08_0739 PF08298 PrkA AAA domain AKJ08_0745 PF00072 Response regulator receiver domain AKJ08_0745 PF08279 HTH domain AKJ08_0749 PF02954 Bacterial regulatory protein, Fis family AKJ08_0749 PF00158 Sigma-54 interaction domain AKJ08_0749 PF00072 Response regulator receiver domain AKJ08_0750 PF00072 Response regulator receiver domain AKJ08_0750 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_0754 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_0762 PF02310 B12 binding domain AKJ08_0762 PF01642 Methylmalonyl-CoA mutase AKJ08_0763 PF03328 HpcH/HpaI aldolase/citrate lyase family AKJ08_0764 PF01575 MaoC like domain AKJ08_0766 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_0766 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_0766 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_0768 PF01595 Cyclin M transmembrane N-terminal domain AKJ08_0768 PF03471 Transporter associated domain AKJ08_0768 PF00571 CBS domain AKJ08_0771 PF01047 MarR family AKJ08_0773 PF01464 Transglycosylase SLT domain AKJ08_0773 PF14718 Soluble lytic murein transglycosylase L domain AKJ08_0777 PF00342 Phosphoglucose isomerase AKJ08_0778 PF01553 Acyltransferase AKJ08_0779 PF01370 NAD dependent epimerase/dehydratase family AKJ08_0780 PF01119 DNA mismatch repair protein, C-terminal domain AKJ08_0780 PF08676 MutL C terminal dimerisation domain AKJ08_0788 PF00072 Response regulator receiver domain AKJ08_0788 PF00158 Sigma-54 interaction domain AKJ08_0788 PF02954 Bacterial regulatory protein, Fis family AKJ08_0790 PF03793 PASTA domain AKJ08_0790 PF00069 Protein kinase domain AKJ08_0791 PF00365 Phosphofructokinase AKJ08_0793 PF01612 3'-5' exonuclease AKJ08_0793 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AKJ08_0793 PF00476 DNA polymerase family A AKJ08_0793 PF01367 5'-3' exonuclease, C-terminal SAM fold AKJ08_0794 PF02594 Uncharacterised ACR, YggU family COG1872 AKJ08_0798 PF16350 FAD dependent oxidoreductase central domain AKJ08_0798 PF01266 FAD dependent oxidoreductase AKJ08_0798 PF01571 Aminomethyltransferase folate-binding domain AKJ08_0798 PF08669 Glycine cleavage T-protein C-terminal barrel domain AKJ08_0800 PF02774 Semialdehyde dehydrogenase, dimerisation domain AKJ08_0800 PF01118 Semialdehyde dehydrogenase, NAD binding domain AKJ08_0801 PF01960 ArgJ family AKJ08_0802 PF01316 Arginine repressor, DNA binding domain AKJ08_0802 PF02863 Arginine repressor, C-terminal domain AKJ08_0803 PF00764 Arginosuccinate synthase AKJ08_0804 PF14698 Argininosuccinate lyase C-terminal AKJ08_0804 PF00206 Lyase AKJ08_0809 PF13302 Acetyltransferase (GNAT) domain AKJ08_0810 PF01142 tRNA pseudouridine synthase D (TruD) AKJ08_0811 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AKJ08_0815 PF04945 YHS domain AKJ08_0818 PF00271 Helicase conserved C-terminal domain AKJ08_0818 PF00270 DEAD/DEAH box helicase AKJ08_0822 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AKJ08_0822 PF00005 ABC transporter AKJ08_0823 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AKJ08_0823 PF00005 ABC transporter AKJ08_0824 PF12911 N-terminal TM domain of oligopeptide transport permease C AKJ08_0824 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_0825 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_0826 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AKJ08_0831 PF01435 Peptidase family M48 AKJ08_0831 PF13181 Tetratricopeptide repeat AKJ08_0834 PF01588 Putative tRNA binding domain AKJ08_0834 PF09334 tRNA synthetases class I (M) AKJ08_0836 PF02321 Outer membrane efflux protein AKJ08_0837 PF00873 AcrB/AcrD/AcrF family AKJ08_0838 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AKJ08_0839 PF01026 TatD related DNase AKJ08_0840 PF01966 HD domain AKJ08_0845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AKJ08_0845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AKJ08_0846 PF00162 Phosphoglycerate kinase AKJ08_0847 PF00121 Triosephosphate isomerase AKJ08_0852 PF00501 AMP-binding enzyme AKJ08_0852 PF13193 AMP-binding enzyme C-terminal domain AKJ08_0855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_0855 PF12806 Acetyl-CoA dehydrogenase C-terminal like AKJ08_0855 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_0855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_0857 PF00005 ABC transporter AKJ08_0857 PF00664 ABC transporter transmembrane region AKJ08_0858 PF00571 CBS domain AKJ08_0860 PF00207 Alpha-2-macroglobulin family AKJ08_0860 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AKJ08_0860 PF01835 MG2 domain AKJ08_0860 PF07703 Alpha-2-macroglobulin bait region domain AKJ08_0861 PF06832 Penicillin-Binding Protein C-terminus Family AKJ08_0861 PF00912 Transglycosylase AKJ08_0861 PF00905 Penicillin binding protein transpeptidase domain AKJ08_0864 PF00211 Adenylate and Guanylate cyclase catalytic domain AKJ08_0864 PF00069 Protein kinase domain AKJ08_0865 PF07075 Protein of unknown function (DUF1343) AKJ08_0866 PF01467 Cytidylyltransferase-like AKJ08_0868 PF07724 AAA domain (Cdc48 subfamily) AKJ08_0868 PF17871 AAA lid domain AKJ08_0868 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_0868 PF02861 Clp amino terminal domain, pathogenicity island component AKJ08_0868 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_0870 PF07676 WD40-like Beta Propeller Repeat AKJ08_0870 PF04052 TolB amino-terminal domain AKJ08_0871 PF01545 Cation efflux family AKJ08_0871 PF16916 Dimerisation domain of Zinc Transporter AKJ08_0875 PF01467 Cytidylyltransferase-like AKJ08_0876 PF00155 Aminotransferase class I and II AKJ08_0877 PF00313 'Cold-shock' DNA-binding domain AKJ08_0879 PF02142 MGS-like domain AKJ08_0879 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AKJ08_0879 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AKJ08_0880 PF01272 Transcription elongation factor, GreA/GreB, C-term AKJ08_0880 PF03449 Transcription elongation factor, N-terminal AKJ08_0881 PF17191 RecG wedge domain AKJ08_0881 PF00270 DEAD/DEAH box helicase AKJ08_0881 PF00271 Helicase conserved C-terminal domain AKJ08_0884 PF02223 Thymidylate kinase AKJ08_0885 PF09335 SNARE associated Golgi protein AKJ08_0889 PF02464 Competence-damaged protein AKJ08_0889 PF18146 Damage-inducible protein CinA KH domain AKJ08_0889 PF00994 Probable molybdopterin binding domain AKJ08_0892 PF00221 Aromatic amino acid lyase AKJ08_0895 PF00535 Glycosyl transferase family 2 AKJ08_0896 PF13361 UvrD-like helicase C-terminal domain AKJ08_0896 PF00580 UvrD/REP helicase N-terminal domain AKJ08_0898 PF00717 Peptidase S24-like AKJ08_0898 PF01726 LexA DNA binding domain AKJ08_0900 PF02405 Permease MlaE AKJ08_0901 PF00005 ABC transporter AKJ08_0904 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AKJ08_0904 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AKJ08_0915 PF01066 CDP-alcohol phosphatidyltransferase AKJ08_0916 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AKJ08_0916 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AKJ08_0916 PF03129 Anticodon binding domain AKJ08_0916 PF02824 TGS domain AKJ08_0917 PF05198 Translation initiation factor IF-3, N-terminal domain AKJ08_0917 PF00707 Translation initiation factor IF-3, C-terminal domain AKJ08_0918 PF01632 Ribosomal protein L35 AKJ08_0919 PF00453 Ribosomal protein L20 AKJ08_0920 PF01409 tRNA synthetases class II core domain (F) AKJ08_0920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AKJ08_0921 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AKJ08_0921 PF03483 B3/4 domain AKJ08_0921 PF03147 Ferredoxin-fold anticodon binding domain AKJ08_0921 PF03484 tRNA synthetase B5 domain AKJ08_0921 PF01588 Putative tRNA binding domain AKJ08_0923 PF00216 Bacterial DNA-binding protein AKJ08_0924 PF01551 Peptidase family M23 AKJ08_0924 PF01476 LysM domain AKJ08_0926 PF02163 Peptidase family M50 AKJ08_0927 PF02616 Segregation and condensation protein ScpA AKJ08_0928 PF04079 Segregation and condensation complex subunit ScpB AKJ08_0929 PF01479 S4 domain AKJ08_0929 PF00849 RNA pseudouridylate synthase AKJ08_0933 PF00113 Enolase, C-terminal TIM barrel domain AKJ08_0933 PF03952 Enolase, N-terminal domain AKJ08_0934 PF04542 Sigma-70 region 2 AKJ08_0934 PF00140 Sigma-70 factor, region 1.2 AKJ08_0934 PF04545 Sigma-70, region 4 AKJ08_0935 PF00571 CBS domain AKJ08_0937 PF04715 Anthranilate synthase component I, N terminal region AKJ08_0937 PF00425 chorismate binding enzyme AKJ08_0939 PF02735 Ku70/Ku80 beta-barrel domain AKJ08_0940 PF17149 Periplasmic sensor domain found in signal transduction proteins AKJ08_0940 PF00672 HAMP domain AKJ08_0940 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_0940 PF01627 Hpt domain AKJ08_0940 PF00072 Response regulator receiver domain AKJ08_0940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_0946 PF00297 Ribosomal protein L3 AKJ08_0961 PF13276 HTH-like domain AKJ08_0961 PF13333 Integrase core domain AKJ08_0961 PF00665 Integrase core domain AKJ08_0963 PF05188 MutS domain II AKJ08_0963 PF05190 MutS family domain IV AKJ08_0963 PF01624 MutS domain I AKJ08_0963 PF00488 MutS domain V AKJ08_0963 PF05192 MutS domain III AKJ08_0964 PF01520 N-acetylmuramoyl-L-alanine amidase AKJ08_0965 PF08335 GlnD PII-uridylyltransferase AKJ08_0965 PF01909 Nucleotidyltransferase domain AKJ08_0965 PF01966 HD domain AKJ08_0967 PF08443 RimK-like ATP-grasp domain AKJ08_0967 PF18030 RimK PreATP-grasp domain AKJ08_0972 PF01300 Telomere recombination AKJ08_0974 PF02899 Phage integrase, N-terminal SAM-like domain AKJ08_0974 PF00589 Phage integrase family AKJ08_0975 PF01554 MatE AKJ08_0976 PF00152 tRNA synthetases class II (D, K and N) AKJ08_0976 PF01336 OB-fold nucleic acid binding domain AKJ08_0977 PF08264 Anticodon-binding domain of tRNA AKJ08_0977 PF00133 tRNA synthetases class I (I, L, M and V) AKJ08_0977 PF13603 Leucyl-tRNA synthetase, Domain 2 AKJ08_0977 PF09334 tRNA synthetases class I (M) AKJ08_0979 PF01649 Ribosomal protein S20 AKJ08_0980 PF03819 MazG nucleotide pyrophosphohydrolase domain AKJ08_0983 PF02562 PhoH-like protein AKJ08_0984 PF07698 7TM receptor with intracellular HD hydrolase AKJ08_0984 PF07697 7TM-HD extracellular AKJ08_0984 PF01966 HD domain AKJ08_0985 PF02130 Uncharacterized protein family UPF0054 AKJ08_0988 PF03462 PCRF domain AKJ08_0988 PF00472 RF-1 domain AKJ08_0990 PF01336 OB-fold nucleic acid binding domain AKJ08_0990 PF00152 tRNA synthetases class II (D, K and N) AKJ08_0991 PF12704 MacB-like periplasmic core domain AKJ08_0991 PF02687 FtsX-like permease family AKJ08_0992 PF00005 ABC transporter AKJ08_0993 PF01029 NusB family AKJ08_0993 PF01189 16S rRNA methyltransferase RsmB/F AKJ08_0995 PF00578 AhpC/TSA family AKJ08_0995 PF10417 C-terminal domain of 1-Cys peroxiredoxin AKJ08_0996 PF00578 AhpC/TSA family AKJ08_0997 PF01521 Iron-sulphur cluster biosynthesis AKJ08_0998 PF00753 Metallo-beta-lactamase superfamily AKJ08_0999 PF02684 Lipid-A-disaccharide synthetase AKJ08_1000 PF01914 MarC family integral membrane protein AKJ08_1001 PF00664 ABC transporter transmembrane region AKJ08_1001 PF00005 ABC transporter AKJ08_1004 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AKJ08_1005 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AKJ08_1007 PF00294 pfkB family carbohydrate kinase AKJ08_1007 PF01467 Cytidylyltransferase-like AKJ08_1008 PF00294 pfkB family carbohydrate kinase AKJ08_1008 PF01467 Cytidylyltransferase-like AKJ08_1009 PF03966 Trm112p-like protein AKJ08_1010 PF08340 Domain of unknown function (DUF1732) AKJ08_1010 PF03755 YicC-like family, N-terminal region AKJ08_1011 PF00625 Guanylate kinase AKJ08_1012 PF01728 FtsJ-like methyltransferase AKJ08_1015 PF12832 MFS_1 like family AKJ08_1018 PF01202 Shikimate kinase AKJ08_1026 PF13742 OB-fold nucleic acid binding domain AKJ08_1026 PF02601 Exonuclease VII, large subunit AKJ08_1027 PF02609 Exonuclease VII small subunit AKJ08_1028 PF00072 Response regulator receiver domain AKJ08_1028 PF00486 Transcriptional regulatory protein, C terminal AKJ08_1029 PF00348 Polyprenyl synthetase AKJ08_1030 PF00266 Aminotransferase class-V AKJ08_1032 PF02661 Fic/DOC family AKJ08_1032 PF13784 Fic/DOC family N-terminal AKJ08_1036 PF03710 Glutamate-ammonia ligase adenylyltransferase AKJ08_1036 PF08335 GlnD PII-uridylyltransferase AKJ08_1038 PF03065 Glycosyl hydrolase family 57 AKJ08_1038 PF09210 Domain of unknown function (DUF1957) AKJ08_1040 PF10531 SLBB domain AKJ08_1040 PF02563 Polysaccharide biosynthesis/export protein AKJ08_1043 PF13614 AAA domain AKJ08_1044 PF02397 Bacterial sugar transferase AKJ08_1045 PF01933 Uncharacterised protein family UPF0052 AKJ08_1046 PF01380 SIS domain AKJ08_1048 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AKJ08_1053 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_1057 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AKJ08_1057 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AKJ08_1057 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AKJ08_1059 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AKJ08_1059 PF01676 Metalloenzyme superfamily AKJ08_1063 PF00012 Hsp70 protein AKJ08_1064 PF00684 DnaJ central domain AKJ08_1064 PF01556 DnaJ C terminal domain AKJ08_1064 PF00226 DnaJ domain AKJ08_1066 PF06689 ClpX C4-type zinc finger AKJ08_1066 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_1066 PF07724 AAA domain (Cdc48 subfamily) AKJ08_1069 PF02811 PHP domain AKJ08_1070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AKJ08_1071 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AKJ08_1072 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AKJ08_1073 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AKJ08_1074 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AKJ08_1074 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AKJ08_1074 PF01568 Molydopterin dinucleotide binding domain AKJ08_1074 PF00384 Molybdopterin oxidoreductase AKJ08_1075 PF00146 NADH dehydrogenase AKJ08_1076 PF00037 4Fe-4S binding domain AKJ08_1077 PF04264 YceI-like domain AKJ08_1078 PF02378 Phosphotransferase system, EIIC AKJ08_1079 PF02378 Phosphotransferase system, EIIC AKJ08_1083 PF00850 Histone deacetylase domain AKJ08_1085 PF01258 Prokaryotic dksA/traR C4-type zinc finger AKJ08_1088 PF00999 Sodium/hydrogen exchanger family AKJ08_1090 PF02824 TGS domain AKJ08_1090 PF04607 Region found in RelA / SpoT proteins AKJ08_1090 PF13291 ACT domain AKJ08_1093 PF01042 Endoribonuclease L-PSP AKJ08_1094 PF01979 Amidohydrolase family AKJ08_1094 PF13382 Adenine deaminase C-terminal domain AKJ08_1095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AKJ08_1096 PF12544 Lysine-2,3-aminomutase AKJ08_1097 PF04055 Radical SAM superfamily AKJ08_1097 PF12544 Lysine-2,3-aminomutase AKJ08_1109 PF01702 Queuine tRNA-ribosyltransferase AKJ08_1110 PF02547 Queuosine biosynthesis protein AKJ08_1111 PF08486 Stage II sporulation protein AKJ08_1116 PF03772 Competence protein AKJ08_1116 PF00753 Metallo-beta-lactamase superfamily AKJ08_1117 PF02559 CarD-like/TRCF domain AKJ08_1118 PF02542 YgbB family AKJ08_1118 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AKJ08_1119 PF09190 DALR domain AKJ08_1119 PF01406 tRNA synthetases class I (C) catalytic domain AKJ08_1120 PF01804 Penicillin amidase AKJ08_1121 PF02151 UvrB/uvrC motif AKJ08_1121 PF04851 Type III restriction enzyme, res subunit AKJ08_1121 PF00271 Helicase conserved C-terminal domain AKJ08_1121 PF12344 Ultra-violet resistance protein B AKJ08_1121 PF17757 UvrB interaction domain AKJ08_1122 PF04389 Peptidase family M28 AKJ08_1124 PF01541 GIY-YIG catalytic domain AKJ08_1124 PF12826 Helix-hairpin-helix motif AKJ08_1124 PF02151 UvrB/uvrC motif AKJ08_1124 PF08459 UvrC Helix-hairpin-helix N-terminal AKJ08_1127 PF01134 Glucose inhibited division protein A AKJ08_1129 PF02899 Phage integrase, N-terminal SAM-like domain AKJ08_1129 PF00589 Phage integrase family AKJ08_1130 PF00227 Proteasome subunit AKJ08_1131 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_1131 PF07724 AAA domain (Cdc48 subfamily) AKJ08_1132 PF03091 CutA1 divalent ion tolerance protein AKJ08_1139 PF01695 IstB-like ATP binding protein AKJ08_1140 PF01695 IstB-like ATP binding protein AKJ08_1143 PF03749 Sugar fermentation stimulation protein RE domain AKJ08_1143 PF17746 SfsA N-terminal OB domain AKJ08_1145 PF00578 AhpC/TSA family AKJ08_1148 PF00392 Bacterial regulatory proteins, gntR family AKJ08_1153 PF00665 Integrase core domain AKJ08_1165 PF02163 Peptidase family M50 AKJ08_1165 PF17820 PDZ domain AKJ08_1169 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AKJ08_1182 PF01554 MatE AKJ08_1187 PF00403 Heavy-metal-associated domain AKJ08_1190 PF00133 tRNA synthetases class I (I, L, M and V) AKJ08_1190 PF08264 Anticodon-binding domain of tRNA AKJ08_1193 PF03625 Domain of unknown function DUF302 AKJ08_1193 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AKJ08_1198 PF18158 Adaptive response protein AidB N-terminal domain AKJ08_1198 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_1198 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_1200 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1200 PF00672 HAMP domain AKJ08_1200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1201 PF00892 EamA-like transporter family AKJ08_1202 PF01743 Poly A polymerase head domain AKJ08_1202 PF13735 tRNA nucleotidyltransferase domain 2 putative AKJ08_1202 PF12627 Probable RNA and SrmB- binding site of polymerase A AKJ08_1204 PF00108 Thiolase, N-terminal domain AKJ08_1204 PF02803 Thiolase, C-terminal domain AKJ08_1205 PF01144 Coenzyme A transferase AKJ08_1206 PF01144 Coenzyme A transferase AKJ08_1207 PF05958 tRNA (Uracil-5-)-methyltransferase AKJ08_1208 PF05958 tRNA (Uracil-5-)-methyltransferase AKJ08_1208 PF01938 TRAM domain AKJ08_1211 PF07681 DoxX AKJ08_1213 PF05114 Protein of unknown function (DUF692) AKJ08_1221 PF00919 Uncharacterized protein family UPF0004 AKJ08_1221 PF04055 Radical SAM superfamily AKJ08_1221 PF01938 TRAM domain AKJ08_1229 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_1230 PF00072 Response regulator receiver domain AKJ08_1230 PF00486 Transcriptional regulatory protein, C terminal AKJ08_1231 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AKJ08_1231 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AKJ08_1233 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_1234 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_1234 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_1234 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_1236 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_1236 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_1236 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_1238 PF02310 B12 binding domain AKJ08_1238 PF01642 Methylmalonyl-CoA mutase AKJ08_1240 PF00682 HMGL-like AKJ08_1243 PF12697 Alpha/beta hydrolase family AKJ08_1245 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AKJ08_1245 PF10996 Beta-Casp domain AKJ08_1245 PF00753 Metallo-beta-lactamase superfamily AKJ08_1250 PF02687 FtsX-like permease family AKJ08_1250 PF00005 ABC transporter AKJ08_1250 PF12704 MacB-like periplasmic core domain AKJ08_1251 PF00005 ABC transporter AKJ08_1253 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AKJ08_1262 PF02780 Transketolase, C-terminal domain AKJ08_1262 PF02779 Transketolase, pyrimidine binding domain AKJ08_1262 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AKJ08_1263 PF01479 S4 domain AKJ08_1263 PF01728 FtsJ-like methyltransferase AKJ08_1264 PF00486 Transcriptional regulatory protein, C terminal AKJ08_1264 PF00072 Response regulator receiver domain AKJ08_1266 PF12146 Serine aminopeptidase, S33 AKJ08_1269 PF00156 Phosphoribosyl transferase domain AKJ08_1271 PF00027 Cyclic nucleotide-binding domain AKJ08_1271 PF00520 Ion transport protein AKJ08_1272 PF00890 FAD binding domain AKJ08_1272 PF02910 Fumarate reductase flavoprotein C-term AKJ08_1273 PF01464 Transglycosylase SLT domain AKJ08_1275 PF04055 Radical SAM superfamily AKJ08_1276 PF00294 pfkB family carbohydrate kinase AKJ08_1276 PF01467 Cytidylyltransferase-like AKJ08_1283 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AKJ08_1284 PF01343 Peptidase family S49 AKJ08_1285 PF10609 NUBPL iron-transfer P-loop NTPase AKJ08_1285 PF01883 Iron-sulfur cluster assembly protein AKJ08_1288 PF00027 Cyclic nucleotide-binding domain AKJ08_1288 PF13545 Crp-like helix-turn-helix domain AKJ08_1293 PF00478 IMP dehydrogenase / GMP reductase domain AKJ08_1293 PF00571 CBS domain AKJ08_1294 PF02540 NAD synthase AKJ08_1294 PF00958 GMP synthase C terminal domain AKJ08_1294 PF00117 Glutamine amidotransferase class-I AKJ08_1299 PF02659 Putative manganese efflux pump AKJ08_1305 PF09857 Putative toxin of bacterial toxin-antitoxin pair AKJ08_1310 PF12950 TaqI-like C-terminal specificity domain AKJ08_1310 PF07669 Eco57I restriction-modification methylase AKJ08_1313 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AKJ08_1314 PF00270 DEAD/DEAH box helicase AKJ08_1314 PF00271 Helicase conserved C-terminal domain AKJ08_1314 PF08494 DEAD/H associated AKJ08_1315 PF04471 Restriction endonuclease AKJ08_1315 PF14338 Mrr N-terminal domain AKJ08_1316 PF03060 Nitronate monooxygenase AKJ08_1321 PF08281 Sigma-70, region 4 AKJ08_1321 PF04542 Sigma-70 region 2 AKJ08_1334 PF00849 RNA pseudouridylate synthase AKJ08_1336 PF00884 Sulfatase AKJ08_1338 PF00293 NUDIX domain AKJ08_1342 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AKJ08_1342 PF01926 50S ribosome-binding GTPase AKJ08_1343 PF01926 50S ribosome-binding GTPase AKJ08_1343 PF07650 KH domain AKJ08_1344 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AKJ08_1345 PF00035 Double-stranded RNA binding motif AKJ08_1345 PF14622 Ribonuclease-III-like AKJ08_1348 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_1348 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_1348 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_1349 PF01039 Carboxyl transferase domain AKJ08_1352 PF07715 TonB-dependent Receptor Plug Domain AKJ08_1352 PF00593 TonB dependent receptor AKJ08_1354 PF05171 Haemin-degrading HemS.ChuX domain AKJ08_1355 PF01497 Periplasmic binding protein AKJ08_1356 PF01032 FecCD transport family AKJ08_1357 PF00005 ABC transporter AKJ08_1358 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_1359 PF00069 Protein kinase domain AKJ08_1360 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1360 PF00989 PAS fold AKJ08_1360 PF16736 Single Cache-like AKJ08_1360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1361 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1361 PF09308 LuxQ, periplasmic AKJ08_1361 PF00072 Response regulator receiver domain AKJ08_1361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1362 PF01812 5-formyltetrahydrofolate cyclo-ligase family AKJ08_1363 PF01479 S4 domain AKJ08_1363 PF00579 tRNA synthetases class I (W and Y) AKJ08_1368 PF01964 Radical SAM ThiC family AKJ08_1369 PF04545 Sigma-70, region 4 AKJ08_1369 PF04542 Sigma-70 region 2 AKJ08_1369 PF00140 Sigma-70 factor, region 1.2 AKJ08_1370 PF01565 FAD binding domain AKJ08_1370 PF02913 FAD linked oxidases, C-terminal domain AKJ08_1371 PF01227 GTP cyclohydrolase I AKJ08_1372 PF01242 6-pyruvoyl tetrahydropterin synthase AKJ08_1374 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AKJ08_1374 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AKJ08_1374 PF00205 Thiamine pyrophosphate enzyme, central domain AKJ08_1379 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AKJ08_1379 PF02867 Ribonucleotide reductase, barrel domain AKJ08_1383 PF11999 Protein of unknown function (DUF3494) AKJ08_1383 PF02368 Bacterial Ig-like domain (group 2) AKJ08_1386 PF03330 Lytic transglycolase AKJ08_1391 PF00037 4Fe-4S binding domain AKJ08_1394 PF01066 CDP-alcohol phosphatidyltransferase AKJ08_1395 PF03471 Transporter associated domain AKJ08_1395 PF00571 CBS domain AKJ08_1397 PF00334 Nucleoside diphosphate kinase AKJ08_1398 PF00549 CoA-ligase AKJ08_1398 PF02629 CoA binding domain AKJ08_1399 PF02629 CoA binding domain AKJ08_1399 PF00549 CoA-ligase AKJ08_1400 PF08442 ATP-grasp domain AKJ08_1400 PF00549 CoA-ligase AKJ08_1401 PF13085 2Fe-2S iron-sulfur cluster binding domain AKJ08_1401 PF13237 4Fe-4S dicluster domain AKJ08_1402 PF00890 FAD binding domain AKJ08_1402 PF02910 Fumarate reductase flavoprotein C-term AKJ08_1404 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AKJ08_1404 PF00056 lactate/malate dehydrogenase, NAD binding domain AKJ08_1405 PF00180 Isocitrate/isopropylmalate dehydrogenase AKJ08_1407 PF02887 Pyruvate kinase, alpha/beta domain AKJ08_1407 PF00391 PEP-utilising enzyme, mobile domain AKJ08_1407 PF00224 Pyruvate kinase, barrel domain AKJ08_1409 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AKJ08_1409 PF00117 Glutamine amidotransferase class-I AKJ08_1410 PF01979 Amidohydrolase family AKJ08_1411 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AKJ08_1411 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AKJ08_1412 PF13091 PLD-like domain AKJ08_1414 PF10502 Signal peptidase, peptidase S26 AKJ08_1415 PF10502 Signal peptidase, peptidase S26 AKJ08_1416 PF00679 Elongation factor G C-terminus AKJ08_1416 PF00009 Elongation factor Tu GTP binding domain AKJ08_1416 PF03144 Elongation factor Tu domain 2 AKJ08_1416 PF06421 GTP-binding protein LepA C-terminus AKJ08_1417 PF16363 GDP-mannose 4,6 dehydratase AKJ08_1422 PF03485 Arginyl tRNA synthetase N terminal domain AKJ08_1422 PF05746 DALR anticodon binding domain AKJ08_1422 PF00750 tRNA synthetases class I (R) AKJ08_1423 PF18073 Rubredoxin metal binding domain AKJ08_1424 PF01230 HIT domain AKJ08_1425 PF01343 Peptidase family S49 AKJ08_1430 PF00072 Response regulator receiver domain AKJ08_1433 PF07728 AAA domain (dynein-related subfamily) AKJ08_1434 PF00149 Calcineurin-like phosphoesterase AKJ08_1435 PF00534 Glycosyl transferases group 1 AKJ08_1435 PF13439 Glycosyltransferase Family 4 AKJ08_1437 PF13185 GAF domain AKJ08_1437 PF02954 Bacterial regulatory protein, Fis family AKJ08_1437 PF00158 Sigma-54 interaction domain AKJ08_1439 PF04238 Protein of unknown function (DUF420) AKJ08_1440 PF02630 SCO1/SenC AKJ08_1441 PF01040 UbiA prenyltransferase family AKJ08_1442 PF07690 Major Facilitator Superfamily AKJ08_1443 PF00484 Carbonic anhydrase AKJ08_1444 PF00005 ABC transporter AKJ08_1444 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AKJ08_1445 PF00005 ABC transporter AKJ08_1445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AKJ08_1446 PF00437 Type II/IV secretion system protein AKJ08_1446 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AKJ08_1447 PF12911 N-terminal TM domain of oligopeptide transport permease C AKJ08_1447 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_1448 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_1449 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AKJ08_1452 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_1453 PF02472 Biopolymer transport protein ExbD/TolR AKJ08_1456 PF01113 Dihydrodipicolinate reductase, N-terminus AKJ08_1458 PF00188 Cysteine-rich secretory protein family AKJ08_1460 PF01206 Sulfurtransferase TusA AKJ08_1462 PF13462 Thioredoxin AKJ08_1462 PF06965 Na+/H+ antiporter 1 AKJ08_1465 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_1466 PF04977 Septum formation initiator AKJ08_1469 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_1469 PF04324 BFD-like [2Fe-2S] binding domain AKJ08_1470 PF00535 Glycosyl transferase family 2 AKJ08_1480 PF01475 Ferric uptake regulator family AKJ08_1484 PF09723 Zinc ribbon domain AKJ08_1486 PF01594 AI-2E family transporter AKJ08_1488 PF01820 D-ala D-ala ligase N-terminus AKJ08_1488 PF07478 D-ala D-ala ligase C-terminus AKJ08_1490 PF00490 Delta-aminolevulinic acid dehydratase AKJ08_1492 PF03808 Glycosyl transferase WecB/TagA/CpsF family AKJ08_1496 PF00731 AIR carboxylase AKJ08_1497 PF02844 Phosphoribosylglycinamide synthetase, N domain AKJ08_1497 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AKJ08_1497 PF02843 Phosphoribosylglycinamide synthetase, C domain AKJ08_1498 PF01808 AICARFT/IMPCHase bienzyme AKJ08_1498 PF02142 MGS-like domain AKJ08_1499 PF04542 Sigma-70 region 2 AKJ08_1499 PF00140 Sigma-70 factor, region 1.2 AKJ08_1499 PF04545 Sigma-70, region 4 AKJ08_1499 PF04539 Sigma-70 region 3 AKJ08_1501 PF00069 Protein kinase domain AKJ08_1501 PF08308 PEGA domain AKJ08_1502 PF00012 Hsp70 protein AKJ08_1509 PF00749 tRNA synthetases class I (E and Q), catalytic domain AKJ08_1510 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1511 PF00072 Response regulator receiver domain AKJ08_1511 PF00158 Sigma-54 interaction domain AKJ08_1511 PF02954 Bacterial regulatory protein, Fis family AKJ08_1516 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AKJ08_1519 PF07516 SecA Wing and Scaffold domain AKJ08_1519 PF02810 SEC-C motif AKJ08_1519 PF07517 SecA DEAD-like domain AKJ08_1519 PF01043 SecA preprotein cross-linking domain AKJ08_1524 PF02872 5'-nucleotidase, C-terminal domain AKJ08_1524 PF00149 Calcineurin-like phosphoesterase AKJ08_1526 PF00106 short chain dehydrogenase AKJ08_1539 PF04542 Sigma-70 region 2 AKJ08_1539 PF08281 Sigma-70, region 4 AKJ08_1542 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AKJ08_1543 PF01638 HxlR-like helix-turn-helix AKJ08_1546 PF02954 Bacterial regulatory protein, Fis family AKJ08_1546 PF00072 Response regulator receiver domain AKJ08_1546 PF00158 Sigma-54 interaction domain AKJ08_1553 PF00665 Integrase core domain AKJ08_1553 PF13276 HTH-like domain AKJ08_1553 PF13333 Integrase core domain AKJ08_1556 PF00230 Major intrinsic protein AKJ08_1559 PF00857 Isochorismatase family AKJ08_1563 PF01734 Patatin-like phospholipase AKJ08_1567 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AKJ08_1567 PF00270 DEAD/DEAH box helicase AKJ08_1567 PF17191 RecG wedge domain AKJ08_1569 PF01420 Type I restriction modification DNA specificity domain AKJ08_1570 PF02384 N-6 DNA Methylase AKJ08_1570 PF12161 HsdM N-terminal domain AKJ08_1577 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AKJ08_1580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AKJ08_1580 PF00364 Biotin-requiring enzyme AKJ08_1580 PF02817 e3 binding domain AKJ08_1581 PF02779 Transketolase, pyrimidine binding domain AKJ08_1581 PF02780 Transketolase, C-terminal domain AKJ08_1582 PF00676 Dehydrogenase E1 component AKJ08_1585 PF03900 Porphobilinogen deaminase, C-terminal domain AKJ08_1585 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AKJ08_1586 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AKJ08_1586 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AKJ08_1586 PF01488 Shikimate / quinate 5-dehydrogenase AKJ08_1587 PF01578 Cytochrome C assembly protein AKJ08_1589 PF00085 Thioredoxin AKJ08_1590 PF01098 Cell cycle protein AKJ08_1591 PF03717 Penicillin-binding Protein dimerisation domain AKJ08_1591 PF00905 Penicillin binding protein transpeptidase domain AKJ08_1595 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_1595 PF00072 Response regulator receiver domain AKJ08_1596 PF02545 Maf-like protein AKJ08_1599 PF02872 5'-nucleotidase, C-terminal domain AKJ08_1599 PF00149 Calcineurin-like phosphoesterase AKJ08_1607 PF02481 DNA recombination-mediator protein A AKJ08_1607 PF17782 DprA winged helix domain AKJ08_1609 PF03884 DNA gyrase inhibitor YacG AKJ08_1613 PF00795 Carbon-nitrogen hydrolase AKJ08_1613 PF02540 NAD synthase AKJ08_1614 PF00486 Transcriptional regulatory protein, C terminal AKJ08_1614 PF00072 Response regulator receiver domain AKJ08_1617 PF01709 Transcriptional regulator AKJ08_1620 PF01029 NusB family AKJ08_1621 PF00885 6,7-dimethyl-8-ribityllumazine synthase AKJ08_1622 PF00925 GTP cyclohydrolase II AKJ08_1622 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AKJ08_1623 PF00677 Lumazine binding domain AKJ08_1625 PF01872 RibD C-terminal domain AKJ08_1625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AKJ08_1626 PF03477 ATP cone domain AKJ08_1627 PF00464 Serine hydroxymethyltransferase AKJ08_1628 PF02502 Ribose/Galactose Isomerase AKJ08_1629 PF02801 Beta-ketoacyl synthase, C-terminal domain AKJ08_1629 PF00109 Beta-ketoacyl synthase, N-terminal domain AKJ08_1630 PF00550 Phosphopantetheine attachment site AKJ08_1632 PF00698 Acyl transferase domain AKJ08_1633 PF02504 Fatty acid synthesis protein AKJ08_1634 PF01783 Ribosomal L32p protein family AKJ08_1636 PF05139 Erythromycin esterase AKJ08_1636 PF00156 Phosphoribosyl transferase domain AKJ08_1638 PF01747 ATP-sulfurylase AKJ08_1638 PF14306 PUA-like domain AKJ08_1639 PF04343 Protein of unknown function, DUF488 AKJ08_1640 PF01219 Prokaryotic diacylglycerol kinase AKJ08_1641 PF00005 ABC transporter AKJ08_1641 PF12848 ABC transporter AKJ08_1642 PF07690 Major Facilitator Superfamily AKJ08_1646 PF02881 SRP54-type protein, helical bundle domain AKJ08_1646 PF02978 Signal peptide binding domain AKJ08_1646 PF00448 SRP54-type protein, GTPase domain AKJ08_1654 PF01694 Rhomboid family AKJ08_1656 PF00924 Mechanosensitive ion channel AKJ08_1657 PF00849 RNA pseudouridylate synthase AKJ08_1659 PF01556 DnaJ C terminal domain AKJ08_1659 PF00684 DnaJ central domain AKJ08_1659 PF00226 DnaJ domain AKJ08_1660 PF10609 NUBPL iron-transfer P-loop NTPase AKJ08_1662 PF03841 L-seryl-tRNA selenium transferase AKJ08_1662 PF12390 Selenocysteine synthase N terminal AKJ08_1663 PF01464 Transglycosylase SLT domain AKJ08_1664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1664 PF00989 PAS fold AKJ08_1664 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1665 PF00158 Sigma-54 interaction domain AKJ08_1665 PF00072 Response regulator receiver domain AKJ08_1665 PF02954 Bacterial regulatory protein, Fis family AKJ08_1666 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AKJ08_1667 PF02021 Uncharacterised protein family UPF0102 AKJ08_1669 PF01245 Ribosomal protein L19 AKJ08_1670 PF01746 tRNA (Guanine-1)-methyltransferase AKJ08_1671 PF01782 RimM N-terminal domain AKJ08_1671 PF05239 PRC-barrel domain AKJ08_1673 PF00886 Ribosomal protein S16 AKJ08_1675 PF00005 ABC transporter AKJ08_1676 PF02405 Permease MlaE AKJ08_1677 PF00842 Alanine racemase, C-terminal domain AKJ08_1677 PF01168 Alanine racemase, N-terminal domain AKJ08_1679 PF13439 Glycosyltransferase Family 4 AKJ08_1679 PF00534 Glycosyl transferases group 1 AKJ08_1683 PF00849 RNA pseudouridylate synthase AKJ08_1684 PF05193 Peptidase M16 inactive domain AKJ08_1684 PF00675 Insulinase (Peptidase family M16) AKJ08_1685 PF05193 Peptidase M16 inactive domain AKJ08_1685 PF00675 Insulinase (Peptidase family M16) AKJ08_1687 PF03150 Di-haem cytochrome c peroxidase AKJ08_1687 PF00034 Cytochrome c AKJ08_1690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_1690 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_1691 PF00072 Response regulator receiver domain AKJ08_1693 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_1694 PF00498 FHA domain AKJ08_1705 PF00072 Response regulator receiver domain AKJ08_1705 PF00158 Sigma-54 interaction domain AKJ08_1705 PF02954 Bacterial regulatory protein, Fis family AKJ08_1707 PF03958 Bacterial type II/III secretion system short domain AKJ08_1707 PF00263 Bacterial type II and III secretion system protein AKJ08_1708 PF00437 Type II/IV secretion system protein AKJ08_1709 PF00482 Type II secretion system (T2SS), protein F AKJ08_1711 PF08334 Type II secretion system (T2SS), protein G AKJ08_1711 PF07963 Prokaryotic N-terminal methylation motif AKJ08_1714 PF11612 Type II secretion system (T2SS), protein J AKJ08_1714 PF07963 Prokaryotic N-terminal methylation motif AKJ08_1719 PF00072 Response regulator receiver domain AKJ08_1719 PF00158 Sigma-54 interaction domain AKJ08_1719 PF02954 Bacterial regulatory protein, Fis family AKJ08_1720 PF13936 Helix-turn-helix domain AKJ08_1720 PF00665 Integrase core domain AKJ08_1723 PF00440 Bacterial regulatory proteins, tetR family AKJ08_1723 PF16859 Tetracyclin repressor-like, C-terminal domain AKJ08_1724 PF13533 Biotin-lipoyl like AKJ08_1724 PF13533 Biotin-lipoyl like AKJ08_1725 PF07690 Major Facilitator Superfamily AKJ08_1727 PF03129 Anticodon binding domain AKJ08_1727 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AKJ08_1727 PF04073 Aminoacyl-tRNA editing domain AKJ08_1728 PF04551 GcpE protein AKJ08_1730 PF13462 Thioredoxin AKJ08_1730 PF06965 Na+/H+ antiporter 1 AKJ08_1731 PF00579 tRNA synthetases class I (W and Y) AKJ08_1733 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AKJ08_1736 PF05491 RuvB C-terminal winged helix domain AKJ08_1736 PF05496 Holliday junction DNA helicase RuvB P-loop domain AKJ08_1736 PF17864 RuvB AAA lid domain AKJ08_1738 PF04552 Sigma-54, DNA binding domain AKJ08_1738 PF04963 Sigma-54 factor, core binding domain AKJ08_1738 PF00309 Sigma-54 factor, Activator interacting domain (AID) AKJ08_1739 PF07499 RuvA, C-terminal domain AKJ08_1739 PF01330 RuvA N terminal domain AKJ08_1740 PF02075 Crossover junction endodeoxyribonuclease RuvC AKJ08_1741 PF02445 Quinolinate synthetase A protein AKJ08_1744 PF02774 Semialdehyde dehydrogenase, dimerisation domain AKJ08_1744 PF01118 Semialdehyde dehydrogenase, NAD binding domain AKJ08_1747 PF00814 Glycoprotease family AKJ08_1748 PF02163 Peptidase family M50 AKJ08_1748 PF17820 PDZ domain AKJ08_1749 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AKJ08_1749 PF13288 DXP reductoisomerase C-terminal domain AKJ08_1749 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AKJ08_1751 PF01255 Putative undecaprenyl diphosphate synthase AKJ08_1752 PF07714 Protein tyrosine kinase AKJ08_1755 PF01695 IstB-like ATP binding protein AKJ08_1756 PF13840 ACT domain AKJ08_1756 PF01842 ACT domain AKJ08_1756 PF00696 Amino acid kinase family AKJ08_1758 PF00005 ABC transporter AKJ08_1764 PF01192 RNA polymerase Rpb6 AKJ08_1765 PF00166 Chaperonin 10 Kd subunit AKJ08_1766 PF00118 TCP-1/cpn60 chaperonin family AKJ08_1768 PF00118 TCP-1/cpn60 chaperonin family AKJ08_1769 PF00118 TCP-1/cpn60 chaperonin family AKJ08_1771 PF00462 Glutaredoxin AKJ08_1773 PF02463 RecF/RecN/SMC N terminal domain AKJ08_1773 PF06470 SMC proteins Flexible Hinge Domain AKJ08_1774 PF00005 ABC transporter AKJ08_1778 PF00072 Response regulator receiver domain AKJ08_1778 PF02954 Bacterial regulatory protein, Fis family AKJ08_1778 PF00158 Sigma-54 interaction domain AKJ08_1780 PF00027 Cyclic nucleotide-binding domain AKJ08_1780 PF13545 Crp-like helix-turn-helix domain AKJ08_1781 PF00195 Chalcone and stilbene synthases, N-terminal domain AKJ08_1781 PF02797 Chalcone and stilbene synthases, C-terminal domain AKJ08_1782 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AKJ08_1784 PF14535 AMP-binding enzyme C-terminal domain AKJ08_1784 PF00501 AMP-binding enzyme AKJ08_1787 PF08281 Sigma-70, region 4 AKJ08_1787 PF04542 Sigma-70 region 2 AKJ08_1788 PF07136 Protein of unknown function (DUF1385) AKJ08_1789 PF01197 Ribosomal protein L31 AKJ08_1790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AKJ08_1790 PF07497 Rho termination factor, RNA-binding domain AKJ08_1790 PF07498 Rho termination factor, N-terminal domain AKJ08_1792 PF00533 BRCA1 C Terminus (BRCT) domain AKJ08_1792 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AKJ08_1792 PF01653 NAD-dependent DNA ligase adenylation domain AKJ08_1792 PF12826 Helix-hairpin-helix motif AKJ08_1792 PF03120 NAD-dependent DNA ligase OB-fold domain AKJ08_1793 PF00708 Acylphosphatase AKJ08_1794 PF00578 AhpC/TSA family AKJ08_1795 PF00795 Carbon-nitrogen hydrolase AKJ08_1796 PF00999 Sodium/hydrogen exchanger family AKJ08_1796 PF02254 TrkA-N domain AKJ08_1797 PF00575 S1 RNA binding domain AKJ08_1799 PF04225 Opacity-associated protein A LysM-like domain AKJ08_1799 PF01551 Peptidase family M23 AKJ08_1801 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AKJ08_1801 PF17944 Arginine decarboxylase C-terminal helical extension AKJ08_1801 PF17810 Arginine decarboxylase helical bundle domain AKJ08_1802 PF00012 Hsp70 protein AKJ08_1805 PF00012 Hsp70 protein AKJ08_1808 PF00171 Aldehyde dehydrogenase family AKJ08_1809 PF00873 AcrB/AcrD/AcrF family AKJ08_1810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AKJ08_1817 PF01370 NAD dependent epimerase/dehydratase family AKJ08_1817 PF08338 Domain of unknown function (DUF1731) AKJ08_1818 PF01596 O-methyltransferase AKJ08_1819 PF07687 Peptidase dimerisation domain AKJ08_1819 PF01546 Peptidase family M20/M25/M40 AKJ08_1821 PF00216 Bacterial DNA-binding protein AKJ08_1822 PF00128 Alpha amylase, catalytic domain AKJ08_1823 PF02446 4-alpha-glucanotransferase AKJ08_1824 PF00857 Isochorismatase family AKJ08_1826 PF02322 Cytochrome bd terminal oxidase subunit II AKJ08_1827 PF01654 Cytochrome bd terminal oxidase subunit I AKJ08_1828 PF01554 MatE AKJ08_1829 PF00330 Aconitase family (aconitate hydratase) AKJ08_1829 PF00694 Aconitase C-terminal domain AKJ08_1835 PF00270 DEAD/DEAH box helicase AKJ08_1835 PF00271 Helicase conserved C-terminal domain AKJ08_1836 PF00140 Sigma-70 factor, region 1.2 AKJ08_1836 PF04542 Sigma-70 region 2 AKJ08_1836 PF04545 Sigma-70, region 4 AKJ08_1843 PF00155 Aminotransferase class I and II AKJ08_1844 PF01678 Diaminopimelate epimerase AKJ08_1845 PF17930 LpxI N-terminal domain AKJ08_1845 PF06230 LpxI C-terminal domain AKJ08_1847 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AKJ08_1847 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AKJ08_1847 PF02142 MGS-like domain AKJ08_1848 PF00117 Glutamine amidotransferase class-I AKJ08_1848 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AKJ08_1856 PF00581 Rhodanese-like domain AKJ08_1857 PF14579 Helix-hairpin-helix motif AKJ08_1857 PF01336 OB-fold nucleic acid binding domain AKJ08_1857 PF02811 PHP domain AKJ08_1857 PF07733 Bacterial DNA polymerase III alpha NTPase domain AKJ08_1857 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AKJ08_1858 PF12804 MobA-like NTP transferase domain AKJ08_1858 PF14602 Hexapeptide repeat of succinyl-transferase AKJ08_1858 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_1864 PF13291 ACT domain AKJ08_1864 PF00291 Pyridoxal-phosphate dependent enzyme AKJ08_1874 PF00005 ABC transporter AKJ08_1878 PF00682 HMGL-like AKJ08_1878 PF08502 LeuA allosteric (dimerisation) domain AKJ08_1880 PF02803 Thiolase, C-terminal domain AKJ08_1880 PF00108 Thiolase, N-terminal domain AKJ08_1882 PF00180 Isocitrate/isopropylmalate dehydrogenase AKJ08_1884 PF00330 Aconitase family (aconitate hydratase) AKJ08_1886 PF00902 Sec-independent protein translocase protein (TatC) AKJ08_1887 PF02416 mttA/Hcf106 family AKJ08_1888 PF00850 Histone deacetylase domain AKJ08_1889 PF04444 Catechol dioxygenase N terminus AKJ08_1889 PF00775 Dioxygenase AKJ08_1891 PF17092 Penicillin-binding protein OB-like domain AKJ08_1891 PF00905 Penicillin binding protein transpeptidase domain AKJ08_1891 PF00912 Transglycosylase AKJ08_1892 PF01555 DNA methylase AKJ08_1893 PF01479 S4 domain AKJ08_1893 PF00849 RNA pseudouridylate synthase AKJ08_1896 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AKJ08_1896 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AKJ08_1898 PF02798 Glutathione S-transferase, N-terminal domain AKJ08_1898 PF00043 Glutathione S-transferase, C-terminal domain AKJ08_1902 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_1902 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AKJ08_1903 PF07977 FabA-like domain AKJ08_1904 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_1904 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AKJ08_1906 PF07244 Surface antigen variable number repeat AKJ08_1906 PF01103 Surface antigen AKJ08_1908 PF00501 AMP-binding enzyme AKJ08_1909 PF05362 Lon protease (S16) C-terminal proteolytic domain AKJ08_1909 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_1909 PF02190 ATP-dependent protease La (LON) substrate-binding domain AKJ08_1910 PF00583 Acetyltransferase (GNAT) family AKJ08_1912 PF00437 Type II/IV secretion system protein AKJ08_1913 PF00263 Bacterial type II and III secretion system protein AKJ08_1913 PF03958 Bacterial type II/III secretion system short domain AKJ08_1917 PF05746 DALR anticodon binding domain AKJ08_1917 PF02092 Glycyl-tRNA synthetase beta subunit AKJ08_1918 PF02091 Glycyl-tRNA synthetase alpha subunit AKJ08_1921 PF00575 S1 RNA binding domain AKJ08_1922 PF02401 LytB protein AKJ08_1923 PF02224 Cytidylate kinase AKJ08_1924 PF00155 Aminotransferase class I and II AKJ08_1925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AKJ08_1927 PF13538 UvrD-like helicase C-terminal domain AKJ08_1929 PF03129 Anticodon binding domain AKJ08_1929 PF13393 Histidyl-tRNA synthetase AKJ08_1930 PF02666 Phosphatidylserine decarboxylase AKJ08_1936 PF00578 AhpC/TSA family AKJ08_1938 PF01118 Semialdehyde dehydrogenase, NAD binding domain AKJ08_1938 PF02774 Semialdehyde dehydrogenase, dimerisation domain AKJ08_1948 PF01196 Ribosomal protein L17 AKJ08_1949 PF01000 RNA polymerase Rpb3/RpoA insert domain AKJ08_1949 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AKJ08_1949 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AKJ08_1950 PF01479 S4 domain AKJ08_1950 PF00163 Ribosomal protein S4/S9 N-terminal domain AKJ08_1951 PF00411 Ribosomal protein S11 AKJ08_1952 PF00416 Ribosomal protein S13/S18 AKJ08_1953 PF00444 Ribosomal protein L36 AKJ08_1954 PF00557 Metallopeptidase family M24 AKJ08_1955 PF05191 Adenylate kinase, active site lid AKJ08_1956 PF00344 SecY translocase AKJ08_1957 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AKJ08_1958 PF00327 Ribosomal protein L30p/L7e AKJ08_1959 PF03719 Ribosomal protein S5, C-terminal domain AKJ08_1959 PF00333 Ribosomal protein S5, N-terminal domain AKJ08_1960 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AKJ08_1961 PF00347 Ribosomal protein L6 AKJ08_1962 PF00410 Ribosomal protein S8 AKJ08_1963 PF00253 Ribosomal protein S14p/S29e AKJ08_1964 PF00673 ribosomal L5P family C-terminus AKJ08_1964 PF00281 Ribosomal protein L5 AKJ08_1965 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AKJ08_1965 PF00467 KOW motif AKJ08_1966 PF00238 Ribosomal protein L14p/L23e AKJ08_1967 PF00366 Ribosomal protein S17 AKJ08_1968 PF00831 Ribosomal L29 protein AKJ08_1969 PF00252 Ribosomal protein L16p/L10e AKJ08_1970 PF00189 Ribosomal protein S3, C-terminal domain AKJ08_1970 PF07650 KH domain AKJ08_1971 PF00237 Ribosomal protein L22p/L17e AKJ08_1972 PF00203 Ribosomal protein S19 AKJ08_1973 PF03947 Ribosomal Proteins L2, C-terminal domain AKJ08_1973 PF00181 Ribosomal Proteins L2, RNA binding domain AKJ08_1974 PF00276 Ribosomal protein L23 AKJ08_1975 PF00573 Ribosomal protein L4/L1 family AKJ08_1976 PF00338 Ribosomal protein S10p/S20e AKJ08_1977 PF03143 Elongation factor Tu C-terminal domain AKJ08_1977 PF03144 Elongation factor Tu domain 2 AKJ08_1977 PF00009 Elongation factor Tu GTP binding domain AKJ08_1978 PF00009 Elongation factor Tu GTP binding domain AKJ08_1978 PF03764 Elongation factor G, domain IV AKJ08_1978 PF14492 Elongation Factor G, domain II AKJ08_1978 PF00679 Elongation factor G C-terminus AKJ08_1978 PF03144 Elongation factor Tu domain 2 AKJ08_1980 PF00177 Ribosomal protein S7p/S5e AKJ08_1981 PF00164 Ribosomal protein S12/S23 AKJ08_1984 PF00795 Carbon-nitrogen hydrolase AKJ08_1989 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AKJ08_1989 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AKJ08_1993 PF13180 PDZ domain AKJ08_1994 PF01025 GrpE AKJ08_1996 PF01434 Peptidase family M41 AKJ08_1996 PF06480 FtsH Extracellular AKJ08_1996 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_1996 PF17862 AAA+ lid domain AKJ08_1999 PF01979 Amidohydrolase family AKJ08_2003 PF00072 Response regulator receiver domain AKJ08_2003 PF01627 Hpt domain AKJ08_2003 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2003 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AKJ08_2003 PF00672 HAMP domain AKJ08_2004 PF00072 Response regulator receiver domain AKJ08_2005 PF01339 CheB methylesterase AKJ08_2005 PF00072 Response regulator receiver domain AKJ08_2006 PF00672 HAMP domain AKJ08_2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2006 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2006 PF00072 Response regulator receiver domain AKJ08_2006 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AKJ08_2006 PF01627 Hpt domain AKJ08_2007 PF00072 Response regulator receiver domain AKJ08_2007 PF01339 CheB methylesterase AKJ08_2008 PF00891 O-methyltransferase domain AKJ08_2008 PF16864 Dimerisation domain AKJ08_2009 PF00266 Aminotransferase class-V AKJ08_2010 PF03301 Tryptophan 2,3-dioxygenase AKJ08_2011 PF17391 Urocanase N-terminal domain AKJ08_2011 PF17392 Urocanase C-terminal domain AKJ08_2011 PF01175 Urocanase Rossmann-like domain AKJ08_2012 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AKJ08_2013 PF01256 Carbohydrate kinase AKJ08_2013 PF03853 YjeF-related protein N-terminus AKJ08_2014 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AKJ08_2015 PF00561 alpha/beta hydrolase fold AKJ08_2015 PF00364 Biotin-requiring enzyme AKJ08_2016 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AKJ08_2016 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AKJ08_2016 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AKJ08_2016 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AKJ08_2017 PF01063 Amino-transferase class IV AKJ08_2019 PF02457 DisA bacterial checkpoint controller nucleotide-binding AKJ08_2020 PF00809 Pterin binding enzyme AKJ08_2021 PF17862 AAA+ lid domain AKJ08_2021 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_2021 PF06480 FtsH Extracellular AKJ08_2021 PF01434 Peptidase family M41 AKJ08_2022 PF09179 TilS substrate binding domain AKJ08_2022 PF01171 PP-loop family AKJ08_2022 PF11734 TilS substrate C-terminal domain AKJ08_2025 PF05853 beta-keto acid cleavage enzyme AKJ08_2026 PF00753 Metallo-beta-lactamase superfamily AKJ08_2027 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AKJ08_2027 PF12833 Helix-turn-helix domain AKJ08_2030 PF03061 Thioesterase superfamily AKJ08_2036 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AKJ08_2038 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase AKJ08_2038 PF02310 B12 binding domain AKJ08_2039 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit AKJ08_2045 PF16200 C-terminal region of band_7 AKJ08_2045 PF01145 SPFH domain / Band 7 family AKJ08_2046 PF01343 Peptidase family S49 AKJ08_2047 PF03167 Uracil DNA glycosylase superfamily AKJ08_2049 PF02441 Flavoprotein AKJ08_2049 PF04127 DNA / pantothenate metabolism flavoprotein AKJ08_2054 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AKJ08_2054 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AKJ08_2055 PF08281 Sigma-70, region 4 AKJ08_2055 PF04542 Sigma-70 region 2 AKJ08_2058 PF00072 Response regulator receiver domain AKJ08_2058 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2061 PF03309 Type III pantothenate kinase AKJ08_2062 PF02237 Biotin protein ligase C terminal domain AKJ08_2062 PF03099 Biotin/lipoate A/B protein ligase family AKJ08_2062 PF08279 HTH domain AKJ08_2064 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AKJ08_2064 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AKJ08_2065 PF08264 Anticodon-binding domain of tRNA AKJ08_2065 PF10458 Valyl tRNA synthetase tRNA binding arm AKJ08_2065 PF00133 tRNA synthetases class I (I, L, M and V) AKJ08_2066 PF00072 Response regulator receiver domain AKJ08_2066 PF14332 Domain of unknown function (DUF4388) AKJ08_2068 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AKJ08_2068 PF00034 Cytochrome c AKJ08_2068 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AKJ08_2069 PF00623 RNA polymerase Rpb1, domain 2 AKJ08_2069 PF04997 RNA polymerase Rpb1, domain 1 AKJ08_2069 PF04998 RNA polymerase Rpb1, domain 5 AKJ08_2069 PF04983 RNA polymerase Rpb1, domain 3 AKJ08_2069 PF05000 RNA polymerase Rpb1, domain 4 AKJ08_2070 PF04560 RNA polymerase Rpb2, domain 7 AKJ08_2070 PF00562 RNA polymerase Rpb2, domain 6 AKJ08_2070 PF10385 RNA polymerase beta subunit external 1 domain AKJ08_2070 PF04565 RNA polymerase Rpb2, domain 3 AKJ08_2070 PF04561 RNA polymerase Rpb2, domain 2 AKJ08_2070 PF04563 RNA polymerase beta subunit AKJ08_2071 PF16320 Ribosomal protein L7/L12 dimerisation domain AKJ08_2071 PF00542 Ribosomal protein L7/L12 C-terminal domain AKJ08_2072 PF00466 Ribosomal protein L10 AKJ08_2073 PF00687 Ribosomal protein L1p/L10e family AKJ08_2074 PF00298 Ribosomal protein L11, RNA binding domain AKJ08_2074 PF03946 Ribosomal protein L11, N-terminal domain AKJ08_2075 PF02357 Transcription termination factor nusG AKJ08_2075 PF00467 KOW motif AKJ08_2077 PF00471 Ribosomal protein L33 AKJ08_2078 PF03143 Elongation factor Tu C-terminal domain AKJ08_2078 PF03144 Elongation factor Tu domain 2 AKJ08_2078 PF00009 Elongation factor Tu GTP binding domain AKJ08_2079 PF08032 RNA 2'-O ribose methyltransferase substrate binding AKJ08_2079 PF00588 SpoU rRNA Methylase family AKJ08_2081 PF18030 RimK PreATP-grasp domain AKJ08_2081 PF08443 RimK-like ATP-grasp domain AKJ08_2085 PF00012 Hsp70 protein AKJ08_2091 PF12464 Maltose acetyltransferase AKJ08_2091 PF14602 Hexapeptide repeat of succinyl-transferase AKJ08_2095 PF05567 Neisseria PilC beta-propeller domain AKJ08_2104 PF02780 Transketolase, C-terminal domain AKJ08_2104 PF02779 Transketolase, pyrimidine binding domain AKJ08_2106 PF01066 CDP-alcohol phosphatidyltransferase AKJ08_2112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2112 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2114 PF01713 Smr domain AKJ08_2114 PF00488 MutS domain V AKJ08_2116 PF17876 Cold shock domain AKJ08_2116 PF00575 S1 RNA binding domain AKJ08_2116 PF08461 Ribonuclease R winged-helix domain AKJ08_2116 PF00773 RNB domain AKJ08_2116 PF08206 Ribonuclease B OB domain AKJ08_2118 PF13411 MerR HTH family regulatory protein AKJ08_2119 PF03099 Biotin/lipoate A/B protein ligase family AKJ08_2119 PF00293 NUDIX domain AKJ08_2120 PF00676 Dehydrogenase E1 component AKJ08_2121 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AKJ08_2121 PF00364 Biotin-requiring enzyme AKJ08_2121 PF02817 e3 binding domain AKJ08_2122 PF02780 Transketolase, C-terminal domain AKJ08_2122 PF02779 Transketolase, pyrimidine binding domain AKJ08_2123 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AKJ08_2123 PF04055 Radical SAM superfamily AKJ08_2124 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_2124 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AKJ08_2126 PF00171 Aldehyde dehydrogenase family AKJ08_2128 PF01966 HD domain AKJ08_2128 PF00072 Response regulator receiver domain AKJ08_2129 PF07724 AAA domain (Cdc48 subfamily) AKJ08_2129 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_2129 PF06689 ClpX C4-type zinc finger AKJ08_2132 PF01416 tRNA pseudouridine synthase AKJ08_2134 PF02540 NAD synthase AKJ08_2135 PF01747 ATP-sulfurylase AKJ08_2135 PF14306 PUA-like domain AKJ08_2139 PF00899 ThiF family AKJ08_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2140 PF07730 Histidine kinase AKJ08_2141 PF00072 Response regulator receiver domain AKJ08_2141 PF00196 Bacterial regulatory proteins, luxR family AKJ08_2144 PF01012 Electron transfer flavoprotein domain AKJ08_2144 PF00766 Electron transfer flavoprotein FAD-binding domain AKJ08_2145 PF01012 Electron transfer flavoprotein domain AKJ08_2146 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_2146 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_2146 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_2147 PF00440 Bacterial regulatory proteins, tetR family AKJ08_2147 PF08359 YsiA-like protein, C-terminal region AKJ08_2151 PF07859 alpha/beta hydrolase fold AKJ08_2152 PF00923 Transaldolase/Fructose-6-phosphate aldolase AKJ08_2153 PF00571 CBS domain AKJ08_2153 PF01380 SIS domain AKJ08_2156 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AKJ08_2157 PF01557 Fumarylacetoacetate (FAA) hydrolase family AKJ08_2158 PF01113 Dihydrodipicolinate reductase, N-terminus AKJ08_2158 PF05173 Dihydrodipicolinate reductase, C-terminus AKJ08_2159 PF00701 Dihydrodipicolinate synthetase family AKJ08_2162 PF07670 Nucleoside recognition AKJ08_2163 PF07670 Nucleoside recognition AKJ08_2164 PF13614 AAA domain AKJ08_2167 PF01479 S4 domain AKJ08_2167 PF00849 RNA pseudouridylate synthase AKJ08_2172 PF02683 Cytochrome C biogenesis protein transmembrane region AKJ08_2174 PF08281 Sigma-70, region 4 AKJ08_2174 PF04542 Sigma-70 region 2 AKJ08_2176 PF00483 Nucleotidyl transferase AKJ08_2177 PF17764 3′ DNA-binding domain (3′BD) AKJ08_2177 PF18074 Primosomal protein N C-terminal domain AKJ08_2177 PF04851 Type III restriction enzyme, res subunit AKJ08_2177 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AKJ08_2177 PF00271 Helicase conserved C-terminal domain AKJ08_2178 PF01327 Polypeptide deformylase AKJ08_2179 PF00730 HhH-GPD superfamily base excision DNA repair protein AKJ08_2179 PF00633 Helix-hairpin-helix motif AKJ08_2180 PF01212 Beta-eliminating lyase AKJ08_2183 PF01066 CDP-alcohol phosphatidyltransferase AKJ08_2184 PF04608 Phosphatidylglycerophosphatase A AKJ08_2185 PF02464 Competence-damaged protein AKJ08_2185 PF00994 Probable molybdopterin binding domain AKJ08_2188 PF03055 Retinal pigment epithelial membrane protein AKJ08_2189 PF00440 Bacterial regulatory proteins, tetR family AKJ08_2189 PF13977 BetI-type transcriptional repressor, C-terminal AKJ08_2191 PF00154 recA bacterial DNA recombination protein AKJ08_2192 PF13335 Magnesium chelatase, subunit ChlI C-terminal AKJ08_2192 PF01078 Magnesium chelatase, subunit ChlI AKJ08_2194 PF00588 SpoU rRNA Methylase family AKJ08_2194 PF12105 SpoU, rRNA methylase, C-terminal AKJ08_2195 PF02563 Polysaccharide biosynthesis/export protein AKJ08_2198 PF00025 ADP-ribosylation factor family AKJ08_2200 PF01712 Deoxynucleoside kinase AKJ08_2202 PF02548 Ketopantoate hydroxymethyltransferase AKJ08_2203 PF02569 Pantoate-beta-alanine ligase AKJ08_2204 PF01668 SmpB protein AKJ08_2205 PF01171 PP-loop family AKJ08_2206 PF00398 Ribosomal RNA adenine dimethylase AKJ08_2207 PF00814 Glycoprotease family AKJ08_2208 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2208 PF00072 Response regulator receiver domain AKJ08_2210 PF00588 SpoU rRNA Methylase family AKJ08_2213 PF00483 Nucleotidyl transferase AKJ08_2214 PF01636 Phosphotransferase enzyme family AKJ08_2215 PF00535 Glycosyl transferase family 2 AKJ08_2221 PF00291 Pyridoxal-phosphate dependent enzyme AKJ08_2221 PF00571 CBS domain AKJ08_2223 PF01053 Cys/Met metabolism PLP-dependent enzyme AKJ08_2225 PF00005 ABC transporter AKJ08_2228 PF17785 PUA-like domain AKJ08_2228 PF10672 S-adenosylmethionine-dependent methyltransferase AKJ08_2230 PF00152 tRNA synthetases class II (D, K and N) AKJ08_2232 PF01118 Semialdehyde dehydrogenase, NAD binding domain AKJ08_2232 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain AKJ08_2233 PF05762 VWA domain containing CoxE-like protein AKJ08_2234 PF12592 Protein of unknown function (DUF3763) AKJ08_2234 PF07728 AAA domain (dynein-related subfamily) AKJ08_2234 PF17868 AAA lid domain AKJ08_2235 PF00069 Protein kinase domain AKJ08_2238 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_2239 PF00364 Biotin-requiring enzyme AKJ08_2240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AKJ08_2240 PF00289 Biotin carboxylase, N-terminal domain AKJ08_2240 PF02785 Biotin carboxylase C-terminal domain AKJ08_2241 PF00313 'Cold-shock' DNA-binding domain AKJ08_2242 PF00091 Tubulin/FtsZ family, GTPase domain AKJ08_2242 PF12327 FtsZ family, C-terminal domain AKJ08_2243 PF02491 SHS2 domain inserted in FTSA AKJ08_2244 PF08478 POTRA domain, FtsQ-type AKJ08_2244 PF03799 Cell division protein FtsQ AKJ08_2247 PF01820 D-ala D-ala ligase N-terminus AKJ08_2247 PF07478 D-ala D-ala ligase C-terminus AKJ08_2248 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AKJ08_2248 PF01565 FAD binding domain AKJ08_2249 PF01225 Mur ligase family, catalytic domain AKJ08_2249 PF02875 Mur ligase family, glutamate ligase domain AKJ08_2249 PF08245 Mur ligase middle domain AKJ08_2250 PF04101 Glycosyltransferase family 28 C-terminal domain AKJ08_2250 PF03033 Glycosyltransferase family 28 N-terminal domain AKJ08_2251 PF01098 Cell cycle protein AKJ08_2252 PF08245 Mur ligase middle domain AKJ08_2252 PF02875 Mur ligase family, glutamate ligase domain AKJ08_2253 PF00953 Glycosyl transferase family 4 AKJ08_2253 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AKJ08_2254 PF08245 Mur ligase middle domain AKJ08_2254 PF01225 Mur ligase family, catalytic domain AKJ08_2254 PF02875 Mur ligase family, glutamate ligase domain AKJ08_2255 PF02875 Mur ligase family, glutamate ligase domain AKJ08_2255 PF01225 Mur ligase family, catalytic domain AKJ08_2255 PF08245 Mur ligase middle domain AKJ08_2256 PF03717 Penicillin-binding Protein dimerisation domain AKJ08_2256 PF00905 Penicillin binding protein transpeptidase domain AKJ08_2257 PF04977 Septum formation initiator AKJ08_2258 PF01795 MraW methylase family AKJ08_2260 PF02381 MraZ protein, putative antitoxin-like AKJ08_2261 PF00534 Glycosyl transferases group 1 AKJ08_2264 PF00561 alpha/beta hydrolase fold AKJ08_2266 PF02233 NAD(P) transhydrogenase beta subunit AKJ08_2268 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AKJ08_2268 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AKJ08_2269 PF00072 Response regulator receiver domain AKJ08_2273 PF00465 Iron-containing alcohol dehydrogenase AKJ08_2274 PF00120 Glutamine synthetase, catalytic domain AKJ08_2274 PF03951 Glutamine synthetase, beta-Grasp domain AKJ08_2275 PF00958 GMP synthase C terminal domain AKJ08_2275 PF00117 Glutamine amidotransferase class-I AKJ08_2276 PF00171 Aldehyde dehydrogenase family AKJ08_2280 PF00691 OmpA family AKJ08_2282 PF00905 Penicillin binding protein transpeptidase domain AKJ08_2282 PF17092 Penicillin-binding protein OB-like domain AKJ08_2282 PF00912 Transglycosylase AKJ08_2284 PF04384 Iron-sulphur cluster assembly AKJ08_2285 PF00111 2Fe-2S iron-sulfur cluster binding domain AKJ08_2286 PF00012 Hsp70 protein AKJ08_2287 PF07743 HSCB C-terminal oligomerisation domain AKJ08_2288 PF01521 Iron-sulphur cluster biosynthesis AKJ08_2289 PF01592 NifU-like N terminal domain AKJ08_2290 PF00266 Aminotransferase class-V AKJ08_2291 PF11412 Disulphide bond corrector protein DsbC AKJ08_2291 PF13098 Thioredoxin-like domain AKJ08_2291 PF02683 Cytochrome C biogenesis protein transmembrane region AKJ08_2292 PF00069 Protein kinase domain AKJ08_2300 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2300 PF08447 PAS fold AKJ08_2300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2300 PF00989 PAS fold AKJ08_2301 PF00675 Insulinase (Peptidase family M16) AKJ08_2301 PF05193 Peptidase M16 inactive domain AKJ08_2306 PF13180 PDZ domain AKJ08_2306 PF03572 Peptidase family S41 AKJ08_2309 PF00156 Phosphoribosyl transferase domain AKJ08_2310 PF08544 GHMP kinases C terminal AKJ08_2310 PF00288 GHMP kinases N terminal domain AKJ08_2311 PF04026 SpoVG AKJ08_2312 PF14572 Phosphoribosyl synthetase-associated domain AKJ08_2312 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AKJ08_2313 PF14693 Ribosomal protein TL5, C-terminal domain AKJ08_2313 PF01386 Ribosomal L25p family AKJ08_2314 PF01195 Peptidyl-tRNA hydrolase AKJ08_2315 PF01250 Ribosomal protein S6 AKJ08_2316 PF01084 Ribosomal protein S18 AKJ08_2317 PF03948 Ribosomal protein L9, C-terminal domain AKJ08_2317 PF01281 Ribosomal protein L9, N-terminal domain AKJ08_2318 PF03796 DnaB-like helicase C terminal domain AKJ08_2318 PF00772 DnaB-like helicase N terminal domain AKJ08_2323 PF08543 Phosphomethylpyrimidine kinase AKJ08_2324 PF07722 Peptidase C26 AKJ08_2325 PF02581 Thiamine monophosphate synthase AKJ08_2330 PF00535 Glycosyl transferase family 2 AKJ08_2333 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_2333 PF07724 AAA domain (Cdc48 subfamily) AKJ08_2333 PF17871 AAA lid domain AKJ08_2333 PF02861 Clp amino terminal domain, pathogenicity island component AKJ08_2333 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_2335 PF01738 Dienelactone hydrolase family AKJ08_2335 PF00156 Phosphoribosyl transferase domain AKJ08_2337 PF01416 tRNA pseudouridine synthase AKJ08_2338 PF00271 Helicase conserved C-terminal domain AKJ08_2338 PF16124 RecQ zinc-binding AKJ08_2338 PF00570 HRDC domain AKJ08_2338 PF16124 RecQ zinc-binding AKJ08_2338 PF09382 RQC domain AKJ08_2338 PF00270 DEAD/DEAH box helicase AKJ08_2338 PF00271 Helicase conserved C-terminal domain AKJ08_2338 PF00570 HRDC domain AKJ08_2338 PF09382 RQC domain AKJ08_2338 PF00270 DEAD/DEAH box helicase AKJ08_2339 PF03462 PCRF domain AKJ08_2339 PF00472 RF-1 domain AKJ08_2340 PF17827 PrmC N-terminal domain AKJ08_2340 PF05175 Methyltransferase small domain AKJ08_2341 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AKJ08_2346 PF01541 GIY-YIG catalytic domain AKJ08_2349 PF05987 Bacterial protein of unknown function (DUF898) AKJ08_2350 PF01435 Peptidase family M48 AKJ08_2354 PF01209 ubiE/COQ5 methyltransferase family AKJ08_2367 PF07732 Multicopper oxidase AKJ08_2367 PF07731 Multicopper oxidase AKJ08_2368 PF00376 MerR family regulatory protein AKJ08_2368 PF09278 MerR, DNA binding AKJ08_2369 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AKJ08_2370 PF00106 short chain dehydrogenase AKJ08_2372 PF00691 OmpA family AKJ08_2372 PF13677 Membrane MotB of proton-channel complex MotA/MotB AKJ08_2376 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_2376 PF08448 PAS fold AKJ08_2377 PF08448 PAS fold AKJ08_2377 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_2382 PF03851 UV-endonuclease UvdE AKJ08_2383 PF11999 Protein of unknown function (DUF3494) AKJ08_2383 PF02368 Bacterial Ig-like domain (group 2) AKJ08_2390 PF13419 Haloacid dehalogenase-like hydrolase AKJ08_2394 PF01451 Low molecular weight phosphotyrosine protein phosphatase AKJ08_2396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2396 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2397 PF13649 Methyltransferase domain AKJ08_2398 PF12697 Alpha/beta hydrolase family AKJ08_2399 PF00155 Aminotransferase class I and II AKJ08_2401 PF13419 Haloacid dehalogenase-like hydrolase AKJ08_2403 PF02190 ATP-dependent protease La (LON) substrate-binding domain AKJ08_2403 PF05362 Lon protease (S16) C-terminal proteolytic domain AKJ08_2403 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_2404 PF00989 PAS fold AKJ08_2404 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2404 PF18698 Histidine kinase sensor domain AKJ08_2404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2404 PF00672 HAMP domain AKJ08_2405 PF13180 PDZ domain AKJ08_2407 PF03448 MgtE intracellular N domain AKJ08_2407 PF00571 CBS domain AKJ08_2407 PF01769 Divalent cation transporter AKJ08_2409 PF00149 Calcineurin-like phosphoesterase AKJ08_2410 PF09371 Tex-like protein N-terminal domain AKJ08_2410 PF00575 S1 RNA binding domain AKJ08_2410 PF16921 Tex protein YqgF-like domain AKJ08_2410 PF17674 HHH domain AKJ08_2411 PF00924 Mechanosensitive ion channel AKJ08_2412 PF03060 Nitronate monooxygenase AKJ08_2412 PF00698 Acyl transferase domain AKJ08_2413 PF16197 Ketoacyl-synthetase C-terminal extension AKJ08_2413 PF00698 Acyl transferase domain AKJ08_2413 PF08659 KR domain AKJ08_2413 PF00550 Phosphopantetheine attachment site AKJ08_2413 PF00109 Beta-ketoacyl synthase, N-terminal domain AKJ08_2413 PF02801 Beta-ketoacyl synthase, C-terminal domain AKJ08_2414 PF00108 Thiolase, N-terminal domain AKJ08_2414 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AKJ08_2415 PF00561 alpha/beta hydrolase fold AKJ08_2416 PF00501 AMP-binding enzyme AKJ08_2417 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AKJ08_2420 PF03471 Transporter associated domain AKJ08_2420 PF02080 TrkA-C domain AKJ08_2420 PF00999 Sodium/hydrogen exchanger family AKJ08_2423 PF02374 Anion-transporting ATPase AKJ08_2425 PF00005 ABC transporter AKJ08_2426 PF00270 DEAD/DEAH box helicase AKJ08_2426 PF03880 DbpA RNA binding domain AKJ08_2426 PF00271 Helicase conserved C-terminal domain AKJ08_2427 PF03372 Endonuclease/Exonuclease/phosphatase family AKJ08_2430 PF00689 Cation transporting ATPase, C-terminus AKJ08_2430 PF00690 Cation transporter/ATPase, N-terminus AKJ08_2431 PF00072 Response regulator receiver domain AKJ08_2431 PF00563 EAL domain AKJ08_2431 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_2440 PF00005 ABC transporter AKJ08_2441 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AKJ08_2441 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AKJ08_2441 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AKJ08_2441 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AKJ08_2445 PF02789 Cytosol aminopeptidase family, N-terminal domain AKJ08_2445 PF00883 Cytosol aminopeptidase family, catalytic domain AKJ08_2446 PF11999 Protein of unknown function (DUF3494) AKJ08_2446 PF02368 Bacterial Ig-like domain (group 2) AKJ08_2447 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AKJ08_2449 PF00753 Metallo-beta-lactamase superfamily AKJ08_2449 PF16123 Hydroxyacylglutathione hydrolase C-terminus AKJ08_2453 PF01435 Peptidase family M48 AKJ08_2456 PF01343 Peptidase family S49 AKJ08_2458 PF07498 Rho termination factor, N-terminal domain AKJ08_2458 PF07497 Rho termination factor, RNA-binding domain AKJ08_2458 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AKJ08_2459 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2459 PF00072 Response regulator receiver domain AKJ08_2460 PF00989 PAS fold AKJ08_2460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2460 PF16736 Single Cache-like AKJ08_2460 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2462 PF02335 Cytochrome c552 AKJ08_2463 PF01627 Hpt domain AKJ08_2463 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AKJ08_2463 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2463 PF00672 HAMP domain AKJ08_2463 PF00072 Response regulator receiver domain AKJ08_2465 PF12849 PBP superfamily domain AKJ08_2466 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_2467 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_2468 PF00005 ABC transporter AKJ08_2469 PF01895 PhoU domain AKJ08_2470 PF01112 Asparaginase AKJ08_2474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_2474 PF03466 LysR substrate binding domain AKJ08_2481 PF00248 Aldo/keto reductase family AKJ08_2486 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_2487 PF02472 Biopolymer transport protein ExbD/TolR AKJ08_2491 PF00072 Response regulator receiver domain AKJ08_2491 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2496 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_2509 PF05199 GMC oxidoreductase AKJ08_2509 PF00732 GMC oxidoreductase AKJ08_2520 PF01966 HD domain AKJ08_2521 PF04452 RNA methyltransferase AKJ08_2523 PF05193 Peptidase M16 inactive domain AKJ08_2523 PF00675 Insulinase (Peptidase family M16) AKJ08_2525 PF04055 Radical SAM superfamily AKJ08_2528 PF01380 SIS domain AKJ08_2529 PF12804 MobA-like NTP transferase domain AKJ08_2529 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_2529 PF14602 Hexapeptide repeat of succinyl-transferase AKJ08_2530 PF00196 Bacterial regulatory proteins, luxR family AKJ08_2530 PF00072 Response regulator receiver domain AKJ08_2534 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_2535 PF04002 RadC-like JAB domain AKJ08_2537 PF00270 DEAD/DEAH box helicase AKJ08_2537 PF09382 RQC domain AKJ08_2537 PF16124 RecQ zinc-binding AKJ08_2537 PF00570 HRDC domain AKJ08_2537 PF00271 Helicase conserved C-terminal domain AKJ08_2541 PF00436 Single-strand binding protein family AKJ08_2542 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AKJ08_2543 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AKJ08_2544 PF00528 Binding-protein-dependent transport system inner membrane component AKJ08_2545 PF03631 Virulence factor BrkB AKJ08_2547 PF06508 Queuosine biosynthesis protein QueC AKJ08_2548 PF00313 'Cold-shock' DNA-binding domain AKJ08_2549 PF01713 Smr domain AKJ08_2550 PF03301 Tryptophan 2,3-dioxygenase AKJ08_2554 PF01494 FAD binding domain AKJ08_2559 PF00561 alpha/beta hydrolase fold AKJ08_2560 PF00633 Helix-hairpin-helix motif AKJ08_2560 PF00730 HhH-GPD superfamily base excision DNA repair protein AKJ08_2560 PF14815 NUDIX domain AKJ08_2567 PF01047 MarR family AKJ08_2568 PF00005 ABC transporter AKJ08_2575 PF02954 Bacterial regulatory protein, Fis family AKJ08_2575 PF13185 GAF domain AKJ08_2575 PF00158 Sigma-54 interaction domain AKJ08_2580 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_2581 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AKJ08_2582 PF00106 short chain dehydrogenase AKJ08_2583 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_2584 PF08543 Phosphomethylpyrimidine kinase AKJ08_2584 PF02581 Thiamine monophosphate synthase AKJ08_2587 PF01743 Poly A polymerase head domain AKJ08_2587 PF12627 Probable RNA and SrmB- binding site of polymerase A AKJ08_2587 PF01966 HD domain AKJ08_2588 PF01966 HD domain AKJ08_2588 PF01743 Poly A polymerase head domain AKJ08_2588 PF12627 Probable RNA and SrmB- binding site of polymerase A AKJ08_2590 PF00085 Thioredoxin AKJ08_2591 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AKJ08_2591 PF00326 Prolyl oligopeptidase family AKJ08_2595 PF00719 Inorganic pyrophosphatase AKJ08_2602 PF00925 GTP cyclohydrolase II AKJ08_2604 PF13614 AAA domain AKJ08_2608 PF00072 Response regulator receiver domain AKJ08_2608 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2609 PF00581 Rhodanese-like domain AKJ08_2610 PF02896 PEP-utilising enzyme, TIM barrel domain AKJ08_2610 PF00391 PEP-utilising enzyme, mobile domain AKJ08_2610 PF05524 PEP-utilising enzyme, N-terminal AKJ08_2611 PF00381 PTS HPr component phosphorylation site AKJ08_2612 PF03613 PTS system mannose/fructose/sorbose family IID component AKJ08_2613 PF03609 PTS system sorbose-specific iic component AKJ08_2614 PF03830 PTS system sorbose subfamily IIB component AKJ08_2615 PF03610 PTS system fructose IIA component AKJ08_2615 PF03830 PTS system sorbose subfamily IIB component AKJ08_2616 PF03668 P-loop ATPase protein family AKJ08_2617 PF07475 HPr Serine kinase C-terminal domain AKJ08_2617 PF02603 HPr Serine kinase N terminus AKJ08_2618 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2618 PF00072 Response regulator receiver domain AKJ08_2619 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AKJ08_2620 PF04963 Sigma-54 factor, core binding domain AKJ08_2620 PF04552 Sigma-54, DNA binding domain AKJ08_2620 PF00309 Sigma-54 factor, Activator interacting domain (AID) AKJ08_2621 PF00005 ABC transporter AKJ08_2624 PF03279 Bacterial lipid A biosynthesis acyltransferase AKJ08_2626 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AKJ08_2626 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AKJ08_2626 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AKJ08_2627 PF01370 NAD dependent epimerase/dehydratase family AKJ08_2628 PF02348 Cytidylyltransferase AKJ08_2629 PF02350 UDP-N-acetylglucosamine 2-epimerase AKJ08_2633 PF00501 AMP-binding enzyme AKJ08_2633 PF13193 AMP-binding enzyme C-terminal domain AKJ08_2637 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_2638 PF01042 Endoribonuclease L-PSP AKJ08_2639 PF00106 short chain dehydrogenase AKJ08_2643 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_2643 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_2643 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_2647 PF01926 50S ribosome-binding GTPase AKJ08_2647 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AKJ08_2649 PF03109 ABC1 family AKJ08_2651 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AKJ08_2651 PF02770 Acyl-CoA dehydrogenase, middle domain AKJ08_2651 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AKJ08_2657 PF01176 Translation initiation factor 1A / IF-1 AKJ08_2660 PF00156 Phosphoribosyl transferase domain AKJ08_2662 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AKJ08_2662 PF01676 Metalloenzyme superfamily AKJ08_2663 PF02590 Predicted SPOUT methyltransferase AKJ08_2665 PF13167 GTP-binding GTPase N-terminal AKJ08_2665 PF16360 GTP-binding GTPase Middle Region AKJ08_2665 PF01926 50S ribosome-binding GTPase AKJ08_2666 PF00561 alpha/beta hydrolase fold AKJ08_2668 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AKJ08_2668 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AKJ08_2673 PF06968 Biotin and Thiamin Synthesis associated domain AKJ08_2673 PF04055 Radical SAM superfamily AKJ08_2674 PF00106 short chain dehydrogenase AKJ08_2675 PF07681 DoxX AKJ08_2676 PF18073 Rubredoxin metal binding domain AKJ08_2679 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AKJ08_2679 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AKJ08_2680 PF12146 Serine aminopeptidase, S33 AKJ08_2684 PF07715 TonB-dependent Receptor Plug Domain AKJ08_2684 PF00593 TonB dependent receptor AKJ08_2687 PF01032 FecCD transport family AKJ08_2688 PF00211 Adenylate and Guanylate cyclase catalytic domain AKJ08_2689 PF00069 Protein kinase domain AKJ08_2689 PF08308 PEGA domain AKJ08_2691 PF00005 ABC transporter AKJ08_2692 PF03544 Gram-negative bacterial TonB protein C-terminal AKJ08_2694 PF02580 D-Tyr-tRNA(Tyr) deacylase AKJ08_2695 PF07687 Peptidase dimerisation domain AKJ08_2695 PF01546 Peptidase family M20/M25/M40 AKJ08_2696 PF04958 Arginine N-succinyltransferase beta subunit AKJ08_2700 PF00696 Amino acid kinase family AKJ08_2701 PF02774 Semialdehyde dehydrogenase, dimerisation domain AKJ08_2701 PF01118 Semialdehyde dehydrogenase, NAD binding domain AKJ08_2705 PF03190 Protein of unknown function, DUF255 AKJ08_2708 PF02954 Bacterial regulatory protein, Fis family AKJ08_2708 PF00158 Sigma-54 interaction domain AKJ08_2708 PF00072 Response regulator receiver domain AKJ08_2709 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AKJ08_2709 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AKJ08_2709 PF00205 Thiamine pyrophosphate enzyme, central domain AKJ08_2711 PF17243 POTRA domain TamA domain 1 AKJ08_2711 PF01103 Surface antigen AKJ08_2711 PF07244 Surface antigen variable number repeat AKJ08_2717 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_2718 PF02472 Biopolymer transport protein ExbD/TolR AKJ08_2723 PF00480 ROK family AKJ08_2724 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AKJ08_2724 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AKJ08_2724 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AKJ08_2724 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AKJ08_2726 PF00873 AcrB/AcrD/AcrF family AKJ08_2729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2729 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2729 PF00989 PAS fold AKJ08_2729 PF11808 Phosphate regulon sensor protein PhoR AKJ08_2730 PF00072 Response regulator receiver domain AKJ08_2730 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2731 PF01061 ABC-2 type transporter AKJ08_2732 PF00005 ABC transporter AKJ08_2732 PF13732 Domain of unknown function (DUF4162) AKJ08_2733 PF00158 Sigma-54 interaction domain AKJ08_2733 PF00072 Response regulator receiver domain AKJ08_2733 PF02954 Bacterial regulatory protein, Fis family AKJ08_2735 PF12255 Insecticide toxin TcdB middle/C-terminal region AKJ08_2735 PF03534 Salmonella virulence plasmid 65kDa B protein AKJ08_2735 PF12256 Insecticide toxin TcdB middle/N-terminal region AKJ08_2744 PF00483 Nucleotidyl transferase AKJ08_2744 PF01050 Mannose-6-phosphate isomerase AKJ08_2745 PF00293 NUDIX domain AKJ08_2746 PF02673 Bacitracin resistance protein BacA AKJ08_2747 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AKJ08_2747 PF05221 S-adenosyl-L-homocysteine hydrolase AKJ08_2748 PF02772 S-adenosylmethionine synthetase, central domain AKJ08_2748 PF02773 S-adenosylmethionine synthetase, C-terminal domain AKJ08_2748 PF00438 S-adenosylmethionine synthetase, N-terminal domain AKJ08_2749 PF02773 S-adenosylmethionine synthetase, C-terminal domain AKJ08_2749 PF00438 S-adenosylmethionine synthetase, N-terminal domain AKJ08_2749 PF02772 S-adenosylmethionine synthetase, central domain AKJ08_2751 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AKJ08_2751 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AKJ08_2751 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_2752 PF02803 Thiolase, C-terminal domain AKJ08_2752 PF00108 Thiolase, N-terminal domain AKJ08_2757 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AKJ08_2757 PF01612 3'-5' exonuclease AKJ08_2757 PF01367 5'-3' exonuclease, C-terminal SAM fold AKJ08_2757 PF00476 DNA polymerase family A AKJ08_2758 PF02976 DNA mismatch repair enzyme MutH AKJ08_2762 PF00311 Phosphoenolpyruvate carboxylase AKJ08_2763 PF00723 Glycosyl hydrolases family 15 AKJ08_2765 PF02705 K+ potassium transporter AKJ08_2766 PF00762 Ferrochelatase AKJ08_2768 PF02492 CobW/HypB/UreG, nucleotide-binding domain AKJ08_2768 PF07683 Cobalamin synthesis protein cobW C-terminal domain AKJ08_2769 PF02801 Beta-ketoacyl synthase, C-terminal domain AKJ08_2769 PF00109 Beta-ketoacyl synthase, N-terminal domain AKJ08_2770 PF04073 Aminoacyl-tRNA editing domain AKJ08_2771 PF00440 Bacterial regulatory proteins, tetR family AKJ08_2771 PF13977 BetI-type transcriptional repressor, C-terminal AKJ08_2772 PF03055 Retinal pigment epithelial membrane protein AKJ08_2775 PF10431 C-terminal, D2-small domain, of ClpB protein AKJ08_2775 PF02861 Clp amino terminal domain, pathogenicity island component AKJ08_2775 PF17871 AAA lid domain AKJ08_2775 PF07724 AAA domain (Cdc48 subfamily) AKJ08_2775 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_2776 PF02617 ATP-dependent Clp protease adaptor protein ClpS AKJ08_2777 PF00571 CBS domain AKJ08_2777 PF03471 Transporter associated domain AKJ08_2777 PF01595 Cyclin M transmembrane N-terminal domain AKJ08_2782 PF00854 POT family AKJ08_2783 PF13368 Topoisomerase C-terminal repeat AKJ08_2783 PF01751 Toprim domain AKJ08_2783 PF01131 DNA topoisomerase AKJ08_2791 PF01584 CheW-like domain AKJ08_2793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AKJ08_2794 PF01584 CheW-like domain AKJ08_2794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2794 PF01627 Hpt domain AKJ08_2794 PF00072 Response regulator receiver domain AKJ08_2795 PF01339 CheB methylesterase AKJ08_2795 PF00072 Response regulator receiver domain AKJ08_2796 PF01739 CheR methyltransferase, SAM binding domain AKJ08_2797 PF00072 Response regulator receiver domain AKJ08_2797 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2799 PF07995 Glucose / Sorbosone dehydrogenase AKJ08_2801 PF12706 Beta-lactamase superfamily domain AKJ08_2802 PF00665 Integrase core domain AKJ08_2802 PF13936 Helix-turn-helix domain AKJ08_2805 PF16326 ABC transporter C-terminal domain AKJ08_2805 PF12848 ABC transporter AKJ08_2805 PF00005 ABC transporter AKJ08_2807 PF12146 Serine aminopeptidase, S33 AKJ08_2811 PF02163 Peptidase family M50 AKJ08_2813 PF00849 RNA pseudouridylate synthase AKJ08_2815 PF01061 ABC-2 type transporter AKJ08_2816 PF00005 ABC transporter AKJ08_2818 PF00285 Citrate synthase, C-terminal domain AKJ08_2819 PF00989 PAS fold AKJ08_2819 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2819 PF11808 Phosphate regulon sensor protein PhoR AKJ08_2820 PF03253 Urea transporter AKJ08_2821 PF02492 CobW/HypB/UreG, nucleotide-binding domain AKJ08_2822 PF01730 UreF AKJ08_2823 PF05194 UreE urease accessory protein, C-terminal domain AKJ08_2823 PF02814 UreE urease accessory protein, N-terminal domain AKJ08_2824 PF01979 Amidohydrolase family AKJ08_2824 PF00449 Urease alpha-subunit, N-terminal domain AKJ08_2825 PF00699 Urease beta subunit AKJ08_2826 PF00547 Urease, gamma subunit AKJ08_2827 PF01774 UreD urease accessory protein AKJ08_2828 PF06912 Protein of unknown function (DUF1275) AKJ08_2835 PF04143 Sulphur transport AKJ08_2836 PF01925 Sulfite exporter TauE/SafE AKJ08_2837 PF04273 Putative phosphatase (DUF442) AKJ08_2837 PF00753 Metallo-beta-lactamase superfamily AKJ08_2838 PF02954 Bacterial regulatory protein, Fis family AKJ08_2838 PF00072 Response regulator receiver domain AKJ08_2838 PF00158 Sigma-54 interaction domain AKJ08_2839 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AKJ08_2839 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AKJ08_2846 PF03466 LysR substrate binding domain AKJ08_2846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_2847 PF00578 AhpC/TSA family AKJ08_2848 PF02627 Carboxymuconolactone decarboxylase family AKJ08_2850 PF03466 LysR substrate binding domain AKJ08_2850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_2851 PF03364 Polyketide cyclase / dehydrase and lipid transport AKJ08_2852 PF05368 NmrA-like family AKJ08_2856 PF01253 Translation initiation factor SUI1 AKJ08_2858 PF17853 GGDEF-like domain AKJ08_2858 PF12833 Helix-turn-helix domain AKJ08_2860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AKJ08_2860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AKJ08_2861 PF03009 Glycerophosphoryl diester phosphodiesterase family AKJ08_2870 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AKJ08_2870 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AKJ08_2873 PF00873 AcrB/AcrD/AcrF family AKJ08_2874 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2874 PF00072 Response regulator receiver domain AKJ08_2875 PF00672 HAMP domain AKJ08_2875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2875 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2876 PF02016 LD-carboxypeptidase N-terminal domain AKJ08_2876 PF17676 LD-carboxypeptidase C-terminal domain AKJ08_2877 PF00144 Beta-lactamase AKJ08_2878 PF01225 Mur ligase family, catalytic domain AKJ08_2878 PF02875 Mur ligase family, glutamate ligase domain AKJ08_2878 PF08245 Mur ligase middle domain AKJ08_2883 PF06827 Zinc finger found in FPG and IleRS AKJ08_2883 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AKJ08_2883 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AKJ08_2884 PF01230 HIT domain AKJ08_2885 PF01546 Peptidase family M20/M25/M40 AKJ08_2885 PF07687 Peptidase dimerisation domain AKJ08_2886 PF00171 Aldehyde dehydrogenase family AKJ08_2887 PF02127 Aminopeptidase I zinc metalloprotease (M18) AKJ08_2888 PF04379 ApaG domain AKJ08_2890 PF05221 S-adenosyl-L-homocysteine hydrolase AKJ08_2890 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AKJ08_2893 PF00665 Integrase core domain AKJ08_2893 PF13333 Integrase core domain AKJ08_2893 PF13276 HTH-like domain AKJ08_2895 PF00665 Integrase core domain AKJ08_2895 PF13936 Helix-turn-helix domain AKJ08_2896 PF04055 Radical SAM superfamily AKJ08_2898 PF04542 Sigma-70 region 2 AKJ08_2898 PF08281 Sigma-70, region 4 AKJ08_2899 PF02245 Methylpurine-DNA glycosylase (MPG) AKJ08_2902 PF03023 Lipid II flippase MurJ AKJ08_2903 PF01966 HD domain AKJ08_2905 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_2905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_2905 PF00672 HAMP domain AKJ08_2906 PF00072 Response regulator receiver domain AKJ08_2906 PF00486 Transcriptional regulatory protein, C terminal AKJ08_2908 PF01053 Cys/Met metabolism PLP-dependent enzyme AKJ08_2909 PF01037 Lrp/AsnC ligand binding domain AKJ08_2912 PF01491 Frataxin-like domain AKJ08_2913 PF01040 UbiA prenyltransferase family AKJ08_2913 PF02628 Cytochrome oxidase assembly protein AKJ08_2914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_2914 PF03466 LysR substrate binding domain AKJ08_2915 PF02633 Creatinine amidohydrolase AKJ08_2917 PF00793 DAHP synthetase I family AKJ08_2918 PF00117 Glutamine amidotransferase class-I AKJ08_2918 PF06418 CTP synthase N-terminus AKJ08_2921 PF00248 Aldo/keto reductase family AKJ08_2924 PF03960 ArsC family AKJ08_2930 PF07690 Major Facilitator Superfamily AKJ08_2932 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_2932 PF00107 Zinc-binding dehydrogenase AKJ08_2933 PF00403 Heavy-metal-associated domain AKJ08_2934 PF00403 Heavy-metal-associated domain AKJ08_2936 PF07690 Major Facilitator Superfamily AKJ08_2944 PF04542 Sigma-70 region 2 AKJ08_2944 PF08281 Sigma-70, region 4 AKJ08_2947 PF00583 Acetyltransferase (GNAT) family AKJ08_2952 PF16884 N-terminal domain of oxidoreductase AKJ08_2952 PF00107 Zinc-binding dehydrogenase AKJ08_2953 PF00557 Metallopeptidase family M24 AKJ08_2954 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_2957 PF01494 FAD binding domain AKJ08_2960 PF02417 Chromate transporter AKJ08_2971 PF00171 Aldehyde dehydrogenase family AKJ08_2974 PF13673 Acetyltransferase (GNAT) domain AKJ08_2974 PF04229 GrpB protein AKJ08_2978 PF00005 ABC transporter AKJ08_2978 PF00664 ABC transporter transmembrane region AKJ08_2979 PF00005 ABC transporter AKJ08_2979 PF00664 ABC transporter transmembrane region AKJ08_2980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AKJ08_2987 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AKJ08_2987 PF02805 Metal binding domain of Ada AKJ08_2987 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AKJ08_2987 PF12833 Helix-turn-helix domain AKJ08_2989 PF00156 Phosphoribosyl transferase domain AKJ08_2991 PF02678 Pirin AKJ08_2991 PF05726 Pirin C-terminal cupin domain AKJ08_2992 PF01048 Phosphorylase superfamily AKJ08_2993 PF00561 alpha/beta hydrolase fold AKJ08_2997 PF03795 YCII-related domain AKJ08_2998 PF08274 PhnA Zinc-Ribbon AKJ08_2998 PF03831 PhnA domain AKJ08_3002 PF05726 Pirin C-terminal cupin domain AKJ08_3002 PF02678 Pirin AKJ08_3004 PF02678 Pirin AKJ08_3004 PF05726 Pirin C-terminal cupin domain AKJ08_3006 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_3007 PF01494 FAD binding domain AKJ08_3009 PF00171 Aldehyde dehydrogenase family AKJ08_3011 PF00206 Lyase AKJ08_3011 PF10415 Fumarase C C-terminus AKJ08_3012 PF00390 Malic enzyme, N-terminal domain AKJ08_3012 PF03949 Malic enzyme, NAD binding domain AKJ08_3014 PF03848 Tellurite resistance protein TehB AKJ08_3015 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_3017 PF00271 Helicase conserved C-terminal domain AKJ08_3017 PF12419 SNF2 Helicase protein AKJ08_3017 PF00176 SNF2 family N-terminal domain AKJ08_3025 PF02773 S-adenosylmethionine synthetase, C-terminal domain AKJ08_3025 PF02772 S-adenosylmethionine synthetase, central domain AKJ08_3025 PF00438 S-adenosylmethionine synthetase, N-terminal domain AKJ08_3033 PF00176 SNF2 family N-terminal domain AKJ08_3033 PF00271 Helicase conserved C-terminal domain AKJ08_3037 PF00989 PAS fold AKJ08_3037 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3040 PF08281 Sigma-70, region 4 AKJ08_3040 PF12680 SnoaL-like domain AKJ08_3040 PF04542 Sigma-70 region 2 AKJ08_3041 PF07237 Protein of unknown function (DUF1428) AKJ08_3045 PF12680 SnoaL-like domain AKJ08_3045 PF08281 Sigma-70, region 4 AKJ08_3045 PF04542 Sigma-70 region 2 AKJ08_3051 PF01161 Phosphatidylethanolamine-binding protein AKJ08_3052 PF13936 Helix-turn-helix domain AKJ08_3052 PF00665 Integrase core domain AKJ08_3056 PF00665 Integrase core domain AKJ08_3056 PF13936 Helix-turn-helix domain AKJ08_3059 PF00144 Beta-lactamase AKJ08_3061 PF17760 UvrA interaction domain AKJ08_3061 PF17755 UvrA DNA-binding domain AKJ08_3061 PF00005 ABC transporter AKJ08_3076 PF01638 HxlR-like helix-turn-helix AKJ08_3077 PF02798 Glutathione S-transferase, N-terminal domain AKJ08_3078 PF00440 Bacterial regulatory proteins, tetR family AKJ08_3078 PF17922 Tetracyclin repressor-like, C-terminal domain AKJ08_3081 PF07730 Histidine kinase AKJ08_3082 PF00196 Bacterial regulatory proteins, luxR family AKJ08_3082 PF00072 Response regulator receiver domain AKJ08_3086 PF17954 Quercetinase C-terminal cupin domain AKJ08_3086 PF02678 Pirin AKJ08_3087 PF03466 LysR substrate binding domain AKJ08_3087 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_3089 PF12706 Beta-lactamase superfamily domain AKJ08_3090 PF08361 MAATS-type transcriptional repressor, C-terminal region AKJ08_3090 PF00440 Bacterial regulatory proteins, tetR family AKJ08_3092 PF01451 Low molecular weight phosphotyrosine protein phosphatase AKJ08_3093 PF01758 Sodium Bile acid symporter family AKJ08_3095 PF01339 CheB methylesterase AKJ08_3095 PF01739 CheR methyltransferase, SAM binding domain AKJ08_3095 PF03705 CheR methyltransferase, all-alpha domain AKJ08_3095 PF08448 PAS fold AKJ08_3096 PF03358 NADPH-dependent FMN reductase AKJ08_3097 PF02678 Pirin AKJ08_3097 PF17954 Quercetinase C-terminal cupin domain AKJ08_3098 PF03466 LysR substrate binding domain AKJ08_3098 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_3104 PF00561 alpha/beta hydrolase fold AKJ08_3106 PF01544 CorA-like Mg2+ transporter protein AKJ08_3109 PF03352 Methyladenine glycosylase AKJ08_3115 PF00155 Aminotransferase class I and II AKJ08_3116 PF08241 Methyltransferase domain AKJ08_3117 PF02661 Fic/DOC family AKJ08_3117 PF13784 Fic/DOC family N-terminal AKJ08_3120 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AKJ08_3120 PF00270 DEAD/DEAH box helicase AKJ08_3120 PF17191 RecG wedge domain AKJ08_3128 PF05724 Thiopurine S-methyltransferase (TPMT) AKJ08_3136 PF01022 Bacterial regulatory protein, arsR family AKJ08_3137 PF01022 Bacterial regulatory protein, arsR family AKJ08_3139 PF03746 LamB/YcsF family AKJ08_3140 PF02682 Carboxyltransferase domain, subdomain C and D AKJ08_3141 PF02626 Carboxyltransferase domain, subdomain A and B AKJ08_3142 PF00561 alpha/beta hydrolase fold AKJ08_3143 PF00561 alpha/beta hydrolase fold AKJ08_3159 PF14489 QueF-like protein AKJ08_3161 PF00749 tRNA synthetases class I (E and Q), catalytic domain AKJ08_3163 PF00378 Enoyl-CoA hydratase/isomerase AKJ08_3164 PF05161 MOFRL family AKJ08_3164 PF13660 Domain of unknown function (DUF4147) AKJ08_3166 PF02911 Formyl transferase, C-terminal domain AKJ08_3166 PF00551 Formyl transferase AKJ08_3167 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AKJ08_3168 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AKJ08_3168 PF08501 Shikimate dehydrogenase substrate binding domain AKJ08_3168 PF01488 Shikimate / quinate 5-dehydrogenase AKJ08_3169 PF01264 Chorismate synthase AKJ08_3170 PF01761 3-dehydroquinate synthase AKJ08_3171 PF01220 Dehydroquinase class II AKJ08_3172 PF03741 Integral membrane protein TerC family AKJ08_3173 PF01189 16S rRNA methyltransferase RsmB/F AKJ08_3173 PF01029 NusB family AKJ08_3174 PF05726 Pirin C-terminal cupin domain AKJ08_3174 PF02678 Pirin AKJ08_3175 PF00834 Ribulose-phosphate 3 epimerase family AKJ08_3176 PF00072 Response regulator receiver domain AKJ08_3176 PF00486 Transcriptional regulatory protein, C terminal AKJ08_3180 PF00919 Uncharacterized protein family UPF0004 AKJ08_3180 PF04055 Radical SAM superfamily AKJ08_3182 PF04241 Protein of unknown function (DUF423) AKJ08_3185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AKJ08_3186 PF01106 NifU-like domain AKJ08_3188 PF00009 Elongation factor Tu GTP binding domain AKJ08_3188 PF16658 Class II release factor RF3, C-terminal domain AKJ08_3188 PF03144 Elongation factor Tu domain 2 AKJ08_3190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3190 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3190 PF16736 Single Cache-like AKJ08_3190 PF00989 PAS fold AKJ08_3192 PF00510 Cytochrome c oxidase subunit III AKJ08_3193 PF00115 Cytochrome C and Quinol oxidase polypeptide I AKJ08_3194 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AKJ08_3201 PF00037 4Fe-4S binding domain AKJ08_3201 PF13247 4Fe-4S dicluster domain AKJ08_3204 PF00270 DEAD/DEAH box helicase AKJ08_3204 PF04408 Helicase associated domain (HA2) AKJ08_3204 PF00271 Helicase conserved C-terminal domain AKJ08_3204 PF08482 ATP-dependent helicase C-terminal AKJ08_3206 PF10672 S-adenosylmethionine-dependent methyltransferase AKJ08_3207 PF01628 HrcA protein C terminal domain AKJ08_3207 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AKJ08_3208 PF13520 Amino acid permease AKJ08_3209 PF02222 ATP-grasp domain AKJ08_3209 PF01370 NAD dependent epimerase/dehydratase family AKJ08_3211 PF01925 Sulfite exporter TauE/SafE AKJ08_3212 PF01790 Prolipoprotein diacylglyceryl transferase AKJ08_3213 PF01252 Signal peptidase (SPase) II AKJ08_3214 PF06827 Zinc finger found in FPG and IleRS AKJ08_3214 PF08264 Anticodon-binding domain of tRNA AKJ08_3214 PF00133 tRNA synthetases class I (I, L, M and V) AKJ08_3215 PF08443 RimK-like ATP-grasp domain AKJ08_3215 PF18030 RimK PreATP-grasp domain AKJ08_3215 PF02080 TrkA-C domain AKJ08_3219 PF13183 4Fe-4S dicluster domain AKJ08_3219 PF02754 Cysteine-rich domain AKJ08_3223 PF00107 Zinc-binding dehydrogenase AKJ08_3223 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3228 PF00986 DNA gyrase B subunit, carboxyl terminus AKJ08_3228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3228 PF00204 DNA gyrase B AKJ08_3228 PF01751 Toprim domain AKJ08_3229 PF02463 RecF/RecN/SMC N terminal domain AKJ08_3230 PF02768 DNA polymerase III beta subunit, C-terminal domain AKJ08_3230 PF02767 DNA polymerase III beta subunit, central domain AKJ08_3230 PF00712 DNA polymerase III beta subunit, N-terminal domain AKJ08_3232 PF11638 DnaA N-terminal domain AKJ08_3232 PF08299 Bacterial dnaA protein helix-turn-helix AKJ08_3232 PF00308 Bacterial dnaA protein AKJ08_3234 PF00468 Ribosomal protein L34 AKJ08_3235 PF00825 Ribonuclease P AKJ08_3236 PF01809 Putative membrane protein insertion efficiency factor AKJ08_3237 PF02096 60Kd inner membrane protein AKJ08_3237 PF14849 YidC periplasmic domain AKJ08_3241 PF00107 Zinc-binding dehydrogenase AKJ08_3241 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3242 PF00756 Putative esterase AKJ08_3243 PF03960 ArsC family AKJ08_3245 PF01609 Transposase DDE domain AKJ08_3246 PF00795 Carbon-nitrogen hydrolase AKJ08_3247 PF02527 rRNA small subunit methyltransferase G AKJ08_3249 PF13614 AAA domain AKJ08_3250 PF02195 ParB-like nuclease domain AKJ08_3250 PF17762 HTH domain found in ParB protein AKJ08_3252 PF00213 ATP synthase delta (OSCP) subunit AKJ08_3253 PF00306 ATP synthase alpha/beta chain, C terminal domain AKJ08_3253 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AKJ08_3253 PF02874 ATP synthase alpha/beta family, beta-barrel domain AKJ08_3254 PF00231 ATP synthase AKJ08_3255 PF02874 ATP synthase alpha/beta family, beta-barrel domain AKJ08_3255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AKJ08_3256 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AKJ08_3256 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AKJ08_3259 PF01979 Amidohydrolase family AKJ08_3260 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3260 PF00109 Beta-ketoacyl synthase, N-terminal domain AKJ08_3260 PF08990 Erythronolide synthase docking AKJ08_3260 PF16197 Ketoacyl-synthetase C-terminal extension AKJ08_3260 PF14765 Polyketide synthase dehydratase AKJ08_3260 PF00550 Phosphopantetheine attachment site AKJ08_3260 PF08659 KR domain AKJ08_3260 PF02801 Beta-ketoacyl synthase, C-terminal domain AKJ08_3260 PF00698 Acyl transferase domain AKJ08_3265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AKJ08_3265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AKJ08_3266 PF00255 Glutathione peroxidase AKJ08_3272 PF00209 Sodium:neurotransmitter symporter family AKJ08_3273 PF01268 Formate--tetrahydrofolate ligase AKJ08_3274 PF03601 Conserved hypothetical protein 698 AKJ08_3276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_3276 PF03466 LysR substrate binding domain AKJ08_3277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_3277 PF03466 LysR substrate binding domain AKJ08_3278 PF00571 CBS domain AKJ08_3279 PF02627 Carboxymuconolactone decarboxylase family AKJ08_3280 PF00085 Thioredoxin AKJ08_3281 PF04264 YceI-like domain AKJ08_3282 PF03466 LysR substrate binding domain AKJ08_3282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AKJ08_3285 PF00106 short chain dehydrogenase AKJ08_3286 PF00999 Sodium/hydrogen exchanger family AKJ08_3288 PF05154 TM2 domain AKJ08_3289 PF05649 Peptidase family M13 AKJ08_3289 PF01431 Peptidase family M13 AKJ08_3292 PF04011 LemA family AKJ08_3294 PF10459 Peptidase S46 AKJ08_3296 PF00072 Response regulator receiver domain AKJ08_3297 PF00672 HAMP domain AKJ08_3297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3297 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3297 PF13426 PAS domain AKJ08_3304 PF00543 Nitrogen regulatory protein P-II AKJ08_3305 PF00989 PAS fold AKJ08_3305 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3306 PF00072 Response regulator receiver domain AKJ08_3306 PF00158 Sigma-54 interaction domain AKJ08_3306 PF02954 Bacterial regulatory protein, Fis family AKJ08_3309 PF00119 ATP synthase A chain AKJ08_3310 PF00137 ATP synthase subunit C AKJ08_3311 PF00430 ATP synthase B/B' CF(0) AKJ08_3312 PF01926 50S ribosome-binding GTPase AKJ08_3312 PF06071 Protein of unknown function (DUF933) AKJ08_3314 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AKJ08_3315 PF00639 PPIC-type PPIASE domain AKJ08_3315 PF09312 SurA N-terminal domain AKJ08_3316 PF00639 PPIC-type PPIASE domain AKJ08_3316 PF09312 SurA N-terminal domain AKJ08_3317 PF05698 Bacterial trigger factor protein (TF) C-terminus AKJ08_3318 PF01432 Peptidase family M3 AKJ08_3322 PF01327 Polypeptide deformylase AKJ08_3324 PF00132 Bacterial transferase hexapeptide (six repeats) AKJ08_3325 PF00291 Pyridoxal-phosphate dependent enzyme AKJ08_3333 PF00892 EamA-like transporter family AKJ08_3334 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AKJ08_3339 PF00270 DEAD/DEAH box helicase AKJ08_3339 PF03461 TRCF domain AKJ08_3339 PF02559 CarD-like/TRCF domain AKJ08_3339 PF00271 Helicase conserved C-terminal domain AKJ08_3339 PF17757 UvrB interaction domain AKJ08_3340 PF01025 GrpE AKJ08_3341 PF00012 Hsp70 protein AKJ08_3342 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AKJ08_3343 PF00226 DnaJ domain AKJ08_3343 PF01556 DnaJ C terminal domain AKJ08_3343 PF00684 DnaJ central domain AKJ08_3350 PF12256 Insecticide toxin TcdB middle/N-terminal region AKJ08_3350 PF12255 Insecticide toxin TcdB middle/C-terminal region AKJ08_3350 PF03534 Salmonella virulence plasmid 65kDa B protein AKJ08_3353 PF14431 YwqJ-like deaminase AKJ08_3353 PF18807 Tripartite Tc toxins repeat AKJ08_3356 PF00012 Hsp70 protein AKJ08_3357 PF01494 FAD binding domain AKJ08_3361 PF06736 Protein of unknown function (DUF1211) AKJ08_3362 PF00248 Aldo/keto reductase family AKJ08_3363 PF06736 Protein of unknown function (DUF1211) AKJ08_3364 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3364 PF00107 Zinc-binding dehydrogenase AKJ08_3365 PF05726 Pirin C-terminal cupin domain AKJ08_3365 PF02678 Pirin AKJ08_3367 PF01152 Bacterial-like globin AKJ08_3369 PF00403 Heavy-metal-associated domain AKJ08_3371 PF00115 Cytochrome C and Quinol oxidase polypeptide I AKJ08_3373 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AKJ08_3373 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AKJ08_3374 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AKJ08_3374 PF12801 4Fe-4S binding domain AKJ08_3374 PF13746 4Fe-4S dicluster domain AKJ08_3376 PF04055 Radical SAM superfamily AKJ08_3376 PF06969 HemN C-terminal domain AKJ08_3379 PF07196 Flagellin hook IN motif AKJ08_3379 PF02465 Flagellar hook-associated protein 2 N-terminus AKJ08_3379 PF07195 Flagellar hook-associated protein 2 C-terminus AKJ08_3380 PF00669 Bacterial flagellin N-terminal helical region AKJ08_3380 PF00700 Bacterial flagellin C-terminal helical region AKJ08_3386 PF01551 Peptidase family M23 AKJ08_3386 PF08525 Opacity-associated protein A N-terminal motif AKJ08_3386 PF01476 LysM domain AKJ08_3387 PF02119 Flagellar P-ring protein AKJ08_3388 PF02107 Flagellar L-ring protein AKJ08_3390 PF00460 Flagella basal body rod protein AKJ08_3390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AKJ08_3391 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AKJ08_3391 PF00460 Flagella basal body rod protein AKJ08_3393 PF04542 Sigma-70 region 2 AKJ08_3393 PF04539 Sigma-70 region 3 AKJ08_3393 PF04545 Sigma-70, region 4 AKJ08_3394 PF10609 NUBPL iron-transfer P-loop NTPase AKJ08_3395 PF00448 SRP54-type protein, GTPase domain AKJ08_3396 PF00771 FHIPEP family AKJ08_3397 PF01312 FlhB HrpN YscU SpaS Family AKJ08_3398 PF01311 Bacterial export proteins, family 1 AKJ08_3399 PF01313 Bacterial export proteins, family 3 AKJ08_3400 PF00813 FliP family AKJ08_3402 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AKJ08_3403 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AKJ08_3403 PF02154 Flagellar motor switch protein FliM AKJ08_3405 PF00691 OmpA family AKJ08_3405 PF13677 Membrane MotB of proton-channel complex MotA/MotB AKJ08_3406 PF01618 MotA/TolQ/ExbB proton channel family AKJ08_3408 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AKJ08_3408 PF00460 Flagella basal body rod protein AKJ08_3408 PF07559 Flagellar basal body protein FlaE AKJ08_3409 PF03963 Flagellar hook capping protein - N-terminal region AKJ08_3412 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AKJ08_3412 PF18269 T3SS EscN ATPase C-terminal domain AKJ08_3414 PF14842 FliG N-terminal domain AKJ08_3414 PF14841 FliG middle domain AKJ08_3414 PF01706 FliG C-terminal domain AKJ08_3415 PF01514 Secretory protein of YscJ/FliF family AKJ08_3415 PF08345 Flagellar M-ring protein C-terminal AKJ08_3416 PF02049 Flagellar hook-basal body complex protein FliE AKJ08_3417 PF00460 Flagella basal body rod protein AKJ08_3417 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AKJ08_3418 PF00460 Flagella basal body rod protein AKJ08_3420 PF00072 Response regulator receiver domain AKJ08_3420 PF00158 Sigma-54 interaction domain AKJ08_3420 PF02954 Bacterial regulatory protein, Fis family AKJ08_3421 PF00672 HAMP domain AKJ08_3421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3421 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3421 PF13426 PAS domain AKJ08_3422 PF07690 Major Facilitator Superfamily AKJ08_3426 PF06733 DEAD_2 AKJ08_3426 PF13307 Helicase C-terminal domain AKJ08_3428 PF02190 ATP-dependent protease La (LON) substrate-binding domain AKJ08_3428 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_3428 PF05362 Lon protease (S16) C-terminal proteolytic domain AKJ08_3429 PF00025 ADP-ribosylation factor family AKJ08_3430 PF00672 HAMP domain AKJ08_3430 PF01627 Hpt domain AKJ08_3430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AKJ08_3430 PF00072 Response regulator receiver domain AKJ08_3430 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3431 PF00586 AIR synthase related protein, N-terminal domain AKJ08_3431 PF02769 AIR synthase related protein, C-terminal domain AKJ08_3432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AKJ08_3432 PF00672 HAMP domain AKJ08_3434 PF01584 CheW-like domain AKJ08_3434 PF01627 Hpt domain AKJ08_3434 PF07194 P2 response regulator binding domain AKJ08_3434 PF02895 Signal transducing histidine kinase, homodimeric domain AKJ08_3434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3435 PF00731 AIR carboxylase AKJ08_3436 PF01969 Protein of unknown function DUF111 AKJ08_3437 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3437 PF08448 PAS fold AKJ08_3437 PF13426 PAS domain AKJ08_3437 PF00072 Response regulator receiver domain AKJ08_3442 PF03030 Inorganic H+ pyrophosphatase AKJ08_3445 PF01557 Fumarylacetoacetate (FAA) hydrolase family AKJ08_3446 PF02798 Glutathione S-transferase, N-terminal domain AKJ08_3446 PF14497 Glutathione S-transferase, C-terminal domain AKJ08_3447 PF04209 homogentisate 1,2-dioxygenase AKJ08_3448 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AKJ08_3451 PF01139 tRNA-splicing ligase RtcB AKJ08_3453 PF00111 2Fe-2S iron-sulfur cluster binding domain AKJ08_3453 PF00175 Oxidoreductase NAD-binding domain AKJ08_3453 PF00970 Oxidoreductase FAD-binding domain AKJ08_3459 PF00120 Glutamine synthetase, catalytic domain AKJ08_3459 PF03951 Glutamine synthetase, beta-Grasp domain AKJ08_3463 PF00005 ABC transporter AKJ08_3464 PF12399 Branched-chain amino acid ATP-binding cassette transporter AKJ08_3464 PF00005 ABC transporter AKJ08_3465 PF02653 Branched-chain amino acid transport system / permease component AKJ08_3465 PF11862 Domain of unknown function (DUF3382) AKJ08_3466 PF02653 Branched-chain amino acid transport system / permease component AKJ08_3467 PF13458 Periplasmic binding protein AKJ08_3469 PF00933 Glycosyl hydrolase family 3 N terminal domain AKJ08_3469 PF01915 Glycosyl hydrolase family 3 C-terminal domain AKJ08_3470 PF00989 PAS fold AKJ08_3470 PF00672 HAMP domain AKJ08_3470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3470 PF18698 Histidine kinase sensor domain AKJ08_3470 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3473 PF07726 ATPase family associated with various cellular activities (AAA) AKJ08_3473 PF17863 AAA lid domain AKJ08_3476 PF08281 Sigma-70, region 4 AKJ08_3476 PF04542 Sigma-70 region 2 AKJ08_3483 PF13807 G-rich domain on putative tyrosine kinase AKJ08_3483 PF13614 AAA domain AKJ08_3483 PF02706 Chain length determinant protein AKJ08_3484 PF00953 Glycosyl transferase family 4 AKJ08_3485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AKJ08_3485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AKJ08_3487 PF13579 Glycosyl transferase 4-like domain AKJ08_3487 PF00534 Glycosyl transferases group 1 AKJ08_3489 PF02350 UDP-N-acetylglucosamine 2-epimerase AKJ08_3491 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AKJ08_3491 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AKJ08_3491 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AKJ08_3492 PF02350 UDP-N-acetylglucosamine 2-epimerase AKJ08_3506 PF07690 Major Facilitator Superfamily AKJ08_3508 PF08446 PAS fold AKJ08_3508 PF00360 Phytochrome region AKJ08_3508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3508 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3508 PF01590 GAF domain AKJ08_3509 PF03705 CheR methyltransferase, all-alpha domain AKJ08_3509 PF01739 CheR methyltransferase, SAM binding domain AKJ08_3510 PF00672 HAMP domain AKJ08_3510 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AKJ08_3510 PF00072 Response regulator receiver domain AKJ08_3510 PF01627 Hpt domain AKJ08_3515 PF01925 Sulfite exporter TauE/SafE AKJ08_3517 PF00583 Acetyltransferase (GNAT) family AKJ08_3518 PF12320 Type 5 capsule protein repressor C-terminal domain AKJ08_3518 PF00149 Calcineurin-like phosphoesterase AKJ08_3520 PF00248 Aldo/keto reductase family AKJ08_3521 PF18029 Glyoxalase-like domain AKJ08_3521 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AKJ08_3524 PF00672 HAMP domain AKJ08_3524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3524 PF13426 PAS domain AKJ08_3524 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3525 PF02954 Bacterial regulatory protein, Fis family AKJ08_3525 PF00158 Sigma-54 interaction domain AKJ08_3525 PF00072 Response regulator receiver domain AKJ08_3526 PF00873 AcrB/AcrD/AcrF family AKJ08_3531 PF13536 Putative multidrug resistance efflux transporter AKJ08_3533 PF00873 AcrB/AcrD/AcrF family AKJ08_3537 PF00296 Luciferase-like monooxygenase AKJ08_3538 PF00472 RF-1 domain AKJ08_3542 PF08281 Sigma-70, region 4 AKJ08_3542 PF04542 Sigma-70 region 2 AKJ08_3542 PF12680 SnoaL-like domain AKJ08_3545 PF03150 Di-haem cytochrome c peroxidase AKJ08_3545 PF00034 Cytochrome c AKJ08_3546 PF04055 Radical SAM superfamily AKJ08_3559 PF01661 Macro domain AKJ08_3561 PF00753 Metallo-beta-lactamase superfamily AKJ08_3562 PF07883 Cupin domain AKJ08_3563 PF13823 Alcohol dehydrogenase GroES-associated AKJ08_3563 PF00107 Zinc-binding dehydrogenase AKJ08_3563 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3564 PF01641 SelR domain AKJ08_3564 PF01625 Peptide methionine sulfoxide reductase AKJ08_3565 PF00270 DEAD/DEAH box helicase AKJ08_3565 PF08148 DSHCT (NUC185) domain AKJ08_3565 PF00271 Helicase conserved C-terminal domain AKJ08_3567 PF05195 Aminopeptidase P, N-terminal domain AKJ08_3567 PF00557 Metallopeptidase family M24 AKJ08_3569 PF00154 recA bacterial DNA recombination protein AKJ08_3571 PF00202 Aminotransferase class-III AKJ08_3576 PF00563 EAL domain AKJ08_3576 PF03707 Bacterial signalling protein N terminal repeat AKJ08_3576 PF00990 Diguanylate cyclase, GGDEF domain AKJ08_3578 PF03989 DNA gyrase C-terminal domain, beta-propeller AKJ08_3578 PF00521 DNA gyrase/topoisomerase IV, subunit A AKJ08_3580 PF02321 Outer membrane efflux protein AKJ08_3581 PF00873 AcrB/AcrD/AcrF family AKJ08_3582 PF00529 HlyD membrane-fusion protein of T1SS AKJ08_3582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AKJ08_3583 PF00440 Bacterial regulatory proteins, tetR family AKJ08_3583 PF16859 Tetracyclin repressor-like, C-terminal domain AKJ08_3588 PF00245 Alkaline phosphatase AKJ08_3589 PF00245 Alkaline phosphatase AKJ08_3592 PF07690 Major Facilitator Superfamily AKJ08_3603 PF13532 2OG-Fe(II) oxygenase superfamily AKJ08_3605 PF02678 Pirin AKJ08_3605 PF05726 Pirin C-terminal cupin domain AKJ08_3606 PF00583 Acetyltransferase (GNAT) family AKJ08_3614 PF00501 AMP-binding enzyme AKJ08_3614 PF13193 AMP-binding enzyme C-terminal domain AKJ08_3616 PF01370 NAD dependent epimerase/dehydratase family AKJ08_3617 PF00326 Prolyl oligopeptidase family AKJ08_3617 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AKJ08_3618 PF00326 Prolyl oligopeptidase family AKJ08_3618 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AKJ08_3624 PF00271 Helicase conserved C-terminal domain AKJ08_3624 PF12137 RNA polymerase recycling family C-terminal AKJ08_3624 PF00176 SNF2 family N-terminal domain AKJ08_3624 PF18339 RapA N-terminal Tudor like domain 1 AKJ08_3624 PF18337 RapA N-terminal Tudor like domain AKJ08_3629 PF06029 AlkA N-terminal domain AKJ08_3629 PF02805 Metal binding domain of Ada AKJ08_3629 PF12833 Helix-turn-helix domain AKJ08_3629 PF00730 HhH-GPD superfamily base excision DNA repair protein AKJ08_3630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AKJ08_3630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AKJ08_3631 PF00375 Sodium:dicarboxylate symporter family AKJ08_3632 PF00491 Arginase family AKJ08_3633 PF01979 Amidohydrolase family AKJ08_3634 PF02926 THUMP domain AKJ08_3634 PF01170 Putative RNA methylase family UPF0020 AKJ08_3635 PF10017 Histidine-specific methyltransferase, SAM-dependent AKJ08_3636 PF13230 Glutamine amidotransferases class-II AKJ08_3637 PF12867 DinB superfamily AKJ08_3637 PF03781 Sulfatase-modifying factor enzyme 1 AKJ08_3646 PF05199 GMC oxidoreductase AKJ08_3646 PF00732 GMC oxidoreductase AKJ08_3647 PF08240 Alcohol dehydrogenase GroES-like domain AKJ08_3647 PF00107 Zinc-binding dehydrogenase AKJ08_3649 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AKJ08_3649 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AKJ08_3650 PF10672 S-adenosylmethionine-dependent methyltransferase AKJ08_3650 PF02926 THUMP domain AKJ08_3650 PF01170 Putative RNA methylase family UPF0020 AKJ08_3652 PF10011 Predicted membrane protein (DUF2254) AKJ08_3655 PF02811 PHP domain AKJ08_3655 PF14579 Helix-hairpin-helix motif AKJ08_3655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AKJ08_3655 PF07733 Bacterial DNA polymerase III alpha NTPase domain AKJ08_3656 PF13936 Helix-turn-helix domain AKJ08_3656 PF00665 Integrase core domain AKJ08_3660 PF07690 Major Facilitator Superfamily AKJ08_3662 PF01979 Amidohydrolase family AKJ08_3665 PF05362 Lon protease (S16) C-terminal proteolytic domain AKJ08_3665 PF00004 ATPase family associated with various cellular activities (AAA) AKJ08_3665 PF02190 ATP-dependent protease La (LON) substrate-binding domain AKJ08_3666 PF07690 Major Facilitator Superfamily AKJ08_3667 PF00043 Glutathione S-transferase, C-terminal domain AKJ08_3667 PF02798 Glutathione S-transferase, N-terminal domain AKJ08_3668 PF00005 ABC transporter AKJ08_3668 PF12848 ABC transporter AKJ08_3669 PF03764 Elongation factor G, domain IV AKJ08_3669 PF03144 Elongation factor Tu domain 2 AKJ08_3669 PF14492 Elongation Factor G, domain II AKJ08_3669 PF00679 Elongation factor G C-terminus AKJ08_3669 PF00009 Elongation factor Tu GTP binding domain AKJ08_3670 PF01722 BolA-like protein AKJ08_3671 PF00462 Glutaredoxin AKJ08_3672 PF00570 HRDC domain AKJ08_3672 PF01612 3'-5' exonuclease AKJ08_3673 PF13180 PDZ domain AKJ08_3675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AKJ08_3676 PF02641 Uncharacterized ACR, COG1993 AKJ08_3677 PF02446 4-alpha-glucanotransferase AKJ08_3678 PF00128 Alpha amylase, catalytic domain AKJ08_3678 PF16657 Maltogenic Amylase, C-terminal domain AKJ08_3679 PF00158 Sigma-54 interaction domain AKJ08_3679 PF00072 Response regulator receiver domain AKJ08_3679 PF02954 Bacterial regulatory protein, Fis family AKJ08_3680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3680 PF00512 His Kinase A (phospho-acceptor) domain AKJ08_3680 PF00072 Response regulator receiver domain AKJ08_3680 PF13426 PAS domain AKJ08_3680 PF08448 PAS fold AKJ08_3682 PF03239 Iron permease FTR1 family AKJ08_3689 PF16916 Dimerisation domain of Zinc Transporter AKJ08_3689 PF01545 Cation efflux family AKJ08_3691 PF00571 CBS domain AKJ08_3691 PF00478 IMP dehydrogenase / GMP reductase domain AKJ08_3692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AKJ08_3700 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AKJ08_3700 PF17854 FtsK alpha domain AKJ08_3700 PF09397 Ftsk gamma domain AKJ08_3700 PF01580 FtsK/SpoIIIE family AKJ08_3703 PF02686 Glu-tRNAGln amidotransferase C subunit AKJ08_3704 PF01425 Amidase AKJ08_3705 PF02637 GatB domain AKJ08_3705 PF02934 GatB/GatE catalytic domain AKJ08_3709 PF00829 Ribosomal prokaryotic L21 protein AKJ08_3710 PF01016 Ribosomal L27 protein AKJ08_3711 PF01018 GTP1/OBG AKJ08_3711 PF01926 50S ribosome-binding GTPase AKJ08_3714 PF00459 Inositol monophosphatase family AKJ08_3715 PF04055 Radical SAM superfamily AKJ08_3715 PF18693 TRAM domain AKJ08_3715 PF00919 Uncharacterized protein family UPF0004 AKJ08_3716 PF04461 Protein of unknown function (DUF520) AKJ08_3717 PF17770 Ribonuclease J C-terminal domain AKJ08_3717 PF00753 Metallo-beta-lactamase superfamily AKJ08_3717 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AKJ08_3723 PF01835 MG2 domain AKJ08_3723 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AKJ08_3723 PF07703 Alpha-2-macroglobulin bait region domain AKJ08_3723 PF00207 Alpha-2-macroglobulin family