locus-tag class description KHQ31_00005 PF00468 Ribosomal protein L34 KHQ31_00010 PF00308 Bacterial dnaA protein KHQ31_00010 PF08299 Bacterial dnaA protein helix-turn-helix KHQ31_00010 PF11638 DnaA N-terminal domain KHQ31_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain KHQ31_00015 PF02767 DNA polymerase III beta subunit, central domain KHQ31_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain KHQ31_00025 PF02463 RecF/RecN/SMC N terminal domain KHQ31_00030 PF00204 DNA gyrase B KHQ31_00030 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ31_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_00030 PF01751 Toprim domain KHQ31_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ31_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ31_00040 PF00884 Sulfatase KHQ31_00045 PF00368 Hydroxymethylglutaryl-coenzyme A reductase KHQ31_00095 PF01418 Helix-turn-helix domain, rpiR family KHQ31_00095 PF01380 SIS domain KHQ31_00100 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KHQ31_00100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ31_00120 PF01479 S4 domain KHQ31_00120 PF00579 tRNA synthetases class I (W and Y) KHQ31_00125 PF00860 Permease family KHQ31_00185 PF00860 Permease family KHQ31_00195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ31_00195 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ31_00205 PF02773 S-adenosylmethionine synthetase, C-terminal domain KHQ31_00205 PF02772 S-adenosylmethionine synthetase, central domain KHQ31_00205 PF00438 S-adenosylmethionine synthetase, N-terminal domain KHQ31_00215 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ31_00215 PF01938 TRAM domain KHQ31_00230 PF08264 Anticodon-binding domain of tRNA KHQ31_00230 PF00133 tRNA synthetases class I (I, L, M and V) KHQ31_00230 PF13603 Leucyl-tRNA synthetase, Domain 2 KHQ31_00230 PF09334 tRNA synthetases class I (M) KHQ31_00240 PF01943 Polysaccharide biosynthesis protein KHQ31_00240 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ31_00255 PF13520 Amino acid permease KHQ31_00260 PF10502 Signal peptidase, peptidase S26 KHQ31_00265 PF03193 RsgA GTPase KHQ31_00275 PF12705 PD-(D/E)XK nuclease superfamily KHQ31_00280 PF13361 UvrD-like helicase C-terminal domain KHQ31_00280 PF00580 UvrD/REP helicase N-terminal domain KHQ31_00280 PF12705 PD-(D/E)XK nuclease superfamily KHQ31_00285 PF00107 Zinc-binding dehydrogenase KHQ31_00285 PF08240 Alcohol dehydrogenase GroES-like domain KHQ31_00290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KHQ31_00290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KHQ31_00295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ31_00295 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ31_00300 PF00156 Phosphoribosyl transferase domain KHQ31_00300 PF09182 Bacterial purine repressor, N-terminal KHQ31_00305 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ31_00305 PF12804 MobA-like NTP transferase domain KHQ31_00310 PF14572 Phosphoribosyl synthetase-associated domain KHQ31_00310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ31_00315 PF06335 Protein of unknown function (DUF1054) KHQ31_00320 PF01250 Ribosomal protein S6 KHQ31_00325 PF00436 Single-strand binding protein family KHQ31_00330 PF01084 Ribosomal protein S18 KHQ31_00345 PF00072 Response regulator receiver domain KHQ31_00345 PF00486 Transcriptional regulatory protein, C terminal KHQ31_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_00350 PF00989 PAS fold KHQ31_00350 PF00512 His Kinase A (phospho-acceptor) domain KHQ31_00350 PF00672 HAMP domain KHQ31_00365 PF00753 Metallo-beta-lactamase superfamily KHQ31_00370 PF13180 PDZ domain KHQ31_00380 PF01966 HD domain KHQ31_00390 PF05066 HB1, ASXL, restriction endonuclease HTH domain KHQ31_00395 PF06418 CTP synthase N-terminus KHQ31_00395 PF00117 Glutamine amidotransferase class-I KHQ31_00400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ31_00405 PF00271 Helicase conserved C-terminal domain KHQ31_00405 PF00270 DEAD/DEAH box helicase KHQ31_00415 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KHQ31_00420 PF13538 UvrD-like helicase C-terminal domain KHQ31_00425 PF00579 tRNA synthetases class I (W and Y) KHQ31_00430 PF02541 Ppx/GppA phosphatase family KHQ31_00440 PF01546 Peptidase family M20/M25/M40 KHQ31_00450 PF00625 Guanylate kinase KHQ31_00470 PF00005 ABC transporter KHQ31_00475 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ31_00480 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00485 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ31_00495 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00500 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00500 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ31_00505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ31_00505 PF00005 ABC transporter KHQ31_00510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ31_00510 PF00005 ABC transporter KHQ31_00520 PF02272 DHHA1 domain KHQ31_00520 PF01368 DHH family KHQ31_00525 PF03948 Ribosomal protein L9, C-terminal domain KHQ31_00525 PF01281 Ribosomal protein L9, N-terminal domain KHQ31_00530 PF00772 DnaB-like helicase N terminal domain KHQ31_00530 PF03796 DnaB-like helicase C terminal domain KHQ31_00535 PF07690 Major Facilitator Superfamily KHQ31_00550 PF08544 GHMP kinases C terminal KHQ31_00550 PF00288 GHMP kinases N terminal domain KHQ31_00560 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ31_00565 PF00300 Histidine phosphatase superfamily (branch 1) KHQ31_00570 PF00005 ABC transporter KHQ31_00570 PF01476 LysM domain KHQ31_00585 PF09335 SNARE associated Golgi protein KHQ31_00595 PF01566 Natural resistance-associated macrophage protein KHQ31_00600 PF08245 Mur ligase middle domain KHQ31_00600 PF02875 Mur ligase family, glutamate ligase domain KHQ31_00600 PF01225 Mur ligase family, catalytic domain KHQ31_00615 PF01098 Cell cycle protein KHQ31_00620 PF14748 Pyrroline-5-carboxylate reductase dimerisation KHQ31_00620 PF03807 NADP oxidoreductase coenzyme F420-dependent KHQ31_00640 PF00005 ABC transporter KHQ31_00640 PF12704 MacB-like periplasmic core domain KHQ31_00640 PF02687 FtsX-like permease family KHQ31_00645 PF01979 Amidohydrolase family KHQ31_00650 PF00392 Bacterial regulatory proteins, gntR family KHQ31_00650 PF07702 UTRA domain KHQ31_00655 PF01479 S4 domain KHQ31_00655 PF00163 Ribosomal protein S4/S9 N-terminal domain KHQ31_00660 PF06160 Septation ring formation regulator, EzrA KHQ31_00665 PF00860 Permease family KHQ31_00670 PF00709 Adenylosuccinate synthetase KHQ31_00675 PF00156 Phosphoribosyl transferase domain KHQ31_00695 PF01255 Putative undecaprenyl diphosphate synthase KHQ31_00705 PF17820 PDZ domain KHQ31_00705 PF02163 Peptidase family M50 KHQ31_00710 PF03129 Anticodon binding domain KHQ31_00710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ31_00710 PF04073 Aminoacyl-tRNA editing domain KHQ31_00715 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ31_00715 PF00929 Exonuclease KHQ31_00715 PF11490 DNA polymerase III polC-type N-terminus II KHQ31_00715 PF02811 PHP domain KHQ31_00715 PF14579 Helix-hairpin-helix motif KHQ31_00715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ31_00715 PF14480 DNA polymerase III polC-type N-terminus I KHQ31_00720 PF00588 SpoU rRNA Methylase family KHQ31_00720 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ31_00755 PF04851 Type III restriction enzyme, res subunit KHQ31_00755 PF00271 Helicase conserved C-terminal domain KHQ31_00765 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KHQ31_00765 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KHQ31_00770 PF00690 Cation transporter/ATPase, N-terminus KHQ31_00770 PF00689 Cation transporting ATPase, C-terminus KHQ31_00785 PF16921 Tex protein YqgF-like domain KHQ31_00785 PF09371 Tex-like protein N-terminal domain KHQ31_00785 PF00575 S1 RNA binding domain KHQ31_00785 PF17674 HHH domain KHQ31_00820 PF00013 KH domain KHQ31_00820 PF12072 Domain of unknown function (DUF3552) KHQ31_00820 PF01966 HD domain KHQ31_00835 PF00478 IMP dehydrogenase / GMP reductase domain KHQ31_00850 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ31_00850 PF12464 Maltose acetyltransferase KHQ31_00860 PF17155 Gammaproteobacterial periplasmic sensor domain KHQ31_00860 PF00990 Diguanylate cyclase, GGDEF domain KHQ31_00865 PF00990 Diguanylate cyclase, GGDEF domain KHQ31_00865 PF17158 Membrane-associated sensor, integral membrane domain KHQ31_00880 PF03358 NADPH-dependent FMN reductase KHQ31_00885 PF05025 RbsD / FucU transport protein family KHQ31_00890 PF00893 Small Multidrug Resistance protein KHQ31_00895 PF00924 Mechanosensitive ion channel KHQ31_00900 PF06800 Sugar transport protein KHQ31_00905 PF00342 Phosphoglucose isomerase KHQ31_00910 PF01132 Elongation factor P (EF-P) OB domain KHQ31_00910 PF08207 Elongation factor P (EF-P) KOW-like domain KHQ31_00910 PF09285 Elongation factor P, C-terminal KHQ31_00915 PF03780 Asp23 family, cell envelope-related function KHQ31_00920 PF01029 NusB family KHQ31_00925 PF05198 Translation initiation factor IF-3, N-terminal domain KHQ31_00925 PF00707 Translation initiation factor IF-3, C-terminal domain KHQ31_00930 PF01632 Ribosomal protein L35 KHQ31_00935 PF00453 Ribosomal protein L20 KHQ31_00935 PF12949 HeH/LEM domain KHQ31_00940 PF00164 Ribosomal protein S12/S23 KHQ31_00945 PF00177 Ribosomal protein S7p/S5e KHQ31_00950 PF00009 Elongation factor Tu GTP binding domain KHQ31_00950 PF03144 Elongation factor Tu domain 2 KHQ31_00950 PF14492 Elongation Factor G, domain II KHQ31_00950 PF00679 Elongation factor G C-terminus KHQ31_00950 PF03764 Elongation factor G, domain IV KHQ31_00955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ31_00955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ31_00965 PF13276 HTH-like domain KHQ31_00965 PF00665 Integrase core domain KHQ31_00965 PF13333 Integrase core domain KHQ31_00970 PF00005 ABC transporter KHQ31_00970 PF08402 TOBE domain KHQ31_00975 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00980 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_00985 PF13416 Bacterial extracellular solute-binding protein KHQ31_00990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ31_00995 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KHQ31_01000 PF07475 HPr Serine kinase C-terminal domain KHQ31_01000 PF02603 HPr Serine kinase N terminus KHQ31_01005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KHQ31_01005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KHQ31_01010 PF00483 Nucleotidyl transferase KHQ31_01015 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ31_01025 PF00381 PTS HPr component phosphorylation site KHQ31_01030 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ31_01030 PF00391 PEP-utilising enzyme, mobile domain KHQ31_01030 PF05524 PEP-utilising enzyme, N-terminal KHQ31_01035 PF00121 Triosephosphate isomerase KHQ31_01040 PF03952 Enolase, N-terminal domain KHQ31_01040 PF00113 Enolase, C-terminal TIM barrel domain KHQ31_01050 PF00773 RNB domain KHQ31_01050 PF08206 Ribonuclease B OB domain KHQ31_01050 PF17876 Cold shock domain KHQ31_01050 PF00575 S1 RNA binding domain KHQ31_01055 PF01668 SmpB protein KHQ31_01060 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_01065 PF00005 ABC transporter KHQ31_01070 PF03167 Uracil DNA glycosylase superfamily KHQ31_01075 PF01515 Phosphate acetyl/butaryl transferase KHQ31_01080 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KHQ31_01090 PF14579 Helix-hairpin-helix motif KHQ31_01090 PF14480 DNA polymerase III polC-type N-terminus I KHQ31_01090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ31_01090 PF11490 DNA polymerase III polC-type N-terminus II KHQ31_01090 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ31_01090 PF00929 Exonuclease KHQ31_01090 PF02811 PHP domain KHQ31_01095 PF01565 FAD binding domain KHQ31_01095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KHQ31_01100 PF02457 DisA bacterial checkpoint controller nucleotide-binding KHQ31_01110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ31_01110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ31_01110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ31_01110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ31_01120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ31_01120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ31_01125 PF01979 Amidohydrolase family KHQ31_01130 PF00117 Glutamine amidotransferase class-I KHQ31_01130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KHQ31_01135 PF02142 MGS-like domain KHQ31_01135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KHQ31_01135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ31_01140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KHQ31_01145 PF00156 Phosphoribosyl transferase domain KHQ31_01150 PF13439 Glycosyltransferase Family 4 KHQ31_01150 PF00534 Glycosyl transferases group 1 KHQ31_01155 PF13439 Glycosyltransferase Family 4 KHQ31_01155 PF00534 Glycosyl transferases group 1 KHQ31_01165 PF00884 Sulfatase KHQ31_01200 PF01588 Putative tRNA binding domain KHQ31_01200 PF09334 tRNA synthetases class I (M) KHQ31_01200 PF08264 Anticodon-binding domain of tRNA KHQ31_01205 PF00999 Sodium/hydrogen exchanger family KHQ31_01210 PF01026 TatD related DNase KHQ31_01215 PF13331 Domain of unknown function (DUF4093) KHQ31_01215 PF01751 Toprim domain KHQ31_01220 PF00398 Ribosomal RNA adenine dimethylase KHQ31_01225 PF00571 CBS domain KHQ31_01225 PF03471 Transporter associated domain KHQ31_01225 PF01595 Cyclin M transmembrane N-terminal domain KHQ31_01235 PF06257 Biofilm formation stimulator VEG KHQ31_01240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ31_01245 PF00303 Thymidylate synthase KHQ31_01250 PF03816 Cell envelope-related transcriptional attenuator domain KHQ31_01260 PF02673 Bacitracin resistance protein BacA KHQ31_01265 PF03631 Virulence factor BrkB KHQ31_01280 PF01195 Peptidyl-tRNA hydrolase KHQ31_01285 PF02559 CarD-like/TRCF domain KHQ31_01285 PF00270 DEAD/DEAH box helicase KHQ31_01285 PF00271 Helicase conserved C-terminal domain KHQ31_01285 PF03461 TRCF domain KHQ31_01285 PF17757 UvrB interaction domain KHQ31_01290 PF01943 Polysaccharide biosynthesis protein KHQ31_01290 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ31_01295 PF01479 S4 domain KHQ31_01305 PF01171 PP-loop family KHQ31_01310 PF00156 Phosphoribosyl transferase domain KHQ31_01315 PF17862 AAA+ lid domain KHQ31_01315 PF00004 ATPase family associated with various cellular activities (AAA) KHQ31_01315 PF01434 Peptidase family M41 KHQ31_01315 PF06480 FtsH Extracellular KHQ31_01320 PF01430 Hsp33 protein KHQ31_01325 PF00152 tRNA synthetases class II (D, K and N) KHQ31_01325 PF01336 OB-fold nucleic acid binding domain KHQ31_01445 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KHQ31_01445 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KHQ31_01455 PF01654 Cytochrome bd terminal oxidase subunit I KHQ31_01460 PF02322 Cytochrome bd terminal oxidase subunit II KHQ31_01465 PF00664 ABC transporter transmembrane region KHQ31_01465 PF00005 ABC transporter KHQ31_01470 PF00664 ABC transporter transmembrane region KHQ31_01470 PF00005 ABC transporter KHQ31_01475 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KHQ31_01475 PF13457 GW (Gly-Tryp) dipeptide domain KHQ31_01480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KHQ31_01480 PF02222 ATP-grasp domain KHQ31_01510 PF00232 Glycosyl hydrolase family 1 KHQ31_01515 PF02378 Phosphotransferase system, EIIC KHQ31_01525 PF00313 'Cold-shock' DNA-binding domain KHQ31_01530 PF00293 NUDIX domain KHQ31_01540 PF01048 Phosphorylase superfamily KHQ31_01555 PF07972 NrdI Flavodoxin like KHQ31_01560 PF00462 Glutaredoxin KHQ31_01565 PF08343 Ribonucleotide reductase N-terminal KHQ31_01565 PF00317 Ribonucleotide reductase, all-alpha domain KHQ31_01565 PF02867 Ribonucleotide reductase, barrel domain KHQ31_01570 PF00268 Ribonucleotide reductase, small chain KHQ31_01580 PF02653 Branched-chain amino acid transport system / permease component KHQ31_01585 PF00005 ABC transporter KHQ31_01590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KHQ31_01605 PF04002 RadC-like JAB domain KHQ31_01615 PF04085 rod shape-determining protein MreC KHQ31_01630 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_01635 PF00005 ABC transporter KHQ31_01640 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ31_01645 PF01268 Formate--tetrahydrofolate ligase KHQ31_01655 PF01925 Sulfite exporter TauE/SafE KHQ31_01665 PF00324 Amino acid permease KHQ31_01670 PF00391 PEP-utilising enzyme, mobile domain KHQ31_01670 PF02887 Pyruvate kinase, alpha/beta domain KHQ31_01670 PF00224 Pyruvate kinase, barrel domain KHQ31_01680 PF04452 RNA methyltransferase KHQ31_01685 PF02381 MraZ protein, putative antitoxin-like KHQ31_01690 PF01795 MraW methylase family KHQ31_01700 PF03793 PASTA domain KHQ31_01700 PF03717 Penicillin-binding Protein dimerisation domain KHQ31_01700 PF00905 Penicillin binding protein transpeptidase domain KHQ31_01705 PF00953 Glycosyl transferase family 4 KHQ31_01705 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KHQ31_01710 PF08245 Mur ligase middle domain KHQ31_01710 PF02875 Mur ligase family, glutamate ligase domain KHQ31_01715 PF04101 Glycosyltransferase family 28 C-terminal domain KHQ31_01715 PF03033 Glycosyltransferase family 28 N-terminal domain KHQ31_01720 PF03799 Cell division protein FtsQ KHQ31_01720 PF08478 POTRA domain, FtsQ-type KHQ31_01725 PF11983 Membrane-attachment and polymerisation-promoting switch KHQ31_01725 PF02491 SHS2 domain inserted in FTSA KHQ31_01730 PF12327 FtsZ family, C-terminal domain KHQ31_01730 PF00091 Tubulin/FtsZ family, GTPase domain KHQ31_01735 PF04472 Cell division protein SepF KHQ31_01740 PF02325 YGGT family KHQ31_01745 PF01479 S4 domain KHQ31_01745 PF17774 Putative RNA-binding domain in YlmH KHQ31_01750 PF05103 DivIVA protein KHQ31_01755 PF08264 Anticodon-binding domain of tRNA KHQ31_01755 PF00133 tRNA synthetases class I (I, L, M and V) KHQ31_01755 PF06827 Zinc finger found in FPG and IleRS KHQ31_01760 PF00300 Histidine phosphatase superfamily (branch 1) KHQ31_01770 PF14490 Helix-hairpin-helix containing domain KHQ31_01770 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ31_01770 PF13538 UvrD-like helicase C-terminal domain KHQ31_01775 PF01709 Transcriptional regulator KHQ31_01780 PF00437 Type II/IV secretion system protein KHQ31_01790 PF07963 Prokaryotic N-terminal methylation motif KHQ31_01820 PF00271 Helicase conserved C-terminal domain KHQ31_01820 PF18074 Primosomal protein N C-terminal domain KHQ31_01820 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KHQ31_01820 PF04851 Type III restriction enzyme, res subunit KHQ31_01820 PF17764 3′ DNA-binding domain (3′BD) KHQ31_01825 PF00551 Formyl transferase KHQ31_01825 PF02911 Formyl transferase, C-terminal domain KHQ31_01830 PF01029 NusB family KHQ31_01830 PF01189 16S rRNA methyltransferase RsmB/F KHQ31_01840 PF00069 Protein kinase domain KHQ31_01840 PF03793 PASTA domain KHQ31_01845 PF16745 RsgA N-terminal domain KHQ31_01845 PF03193 RsgA GTPase KHQ31_01850 PF00834 Ribulose-phosphate 3 epimerase family KHQ31_01855 PF04263 Thiamin pyrophosphokinase, catalytic domain KHQ31_01855 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KHQ31_01860 PF00830 Ribosomal L28 family KHQ31_01865 PF03780 Asp23 family, cell envelope-related function KHQ31_01870 PF02734 DAK2 domain KHQ31_01870 PF13684 Dihydroxyacetone kinase family KHQ31_01875 PF00270 DEAD/DEAH box helicase KHQ31_01875 PF17191 RecG wedge domain KHQ31_01875 PF00271 Helicase conserved C-terminal domain KHQ31_01880 PF02504 Fatty acid synthesis protein KHQ31_01885 PF00550 Phosphopantetheine attachment site KHQ31_01890 PF14622 Ribonuclease-III-like KHQ31_01890 PF00035 Double-stranded RNA binding motif KHQ31_01895 PF02463 RecF/RecN/SMC N terminal domain KHQ31_01895 PF06470 SMC proteins Flexible Hinge Domain KHQ31_01900 PF02881 SRP54-type protein, helical bundle domain KHQ31_01900 PF00448 SRP54-type protein, GTPase domain KHQ31_01905 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KHQ31_01910 PF00448 SRP54-type protein, GTPase domain KHQ31_01910 PF02881 SRP54-type protein, helical bundle domain KHQ31_01910 PF02978 Signal peptide binding domain KHQ31_01915 PF00886 Ribosomal protein S16 KHQ31_01920 PF05239 PRC-barrel domain KHQ31_01920 PF01782 RimM N-terminal domain KHQ31_01925 PF01746 tRNA (Guanine-1)-methyltransferase KHQ31_01930 PF01245 Ribosomal protein L19 KHQ31_01935 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ31_01935 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ31_01940 PF01361 Tautomerase enzyme KHQ31_01945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ31_01945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ31_01950 PF00293 NUDIX domain KHQ31_01955 PF01712 Deoxynucleoside kinase KHQ31_01960 PF01741 Large-conductance mechanosensitive channel, MscL KHQ31_01985 PF06146 Phosphate-starvation-inducible E KHQ31_01990 PF05389 Negative regulator of genetic competence (MecA) KHQ31_01995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KHQ31_02000 PF01432 Peptidase family M3 KHQ31_02000 PF08439 Oligopeptidase F KHQ31_02015 PF01321 Creatinase/Prolidase N-terminal domain KHQ31_02015 PF00557 Metallopeptidase family M24 KHQ31_02020 PF00356 Bacterial regulatory proteins, lacI family KHQ31_02055 PF04127 DNA / pantothenate metabolism flavoprotein KHQ31_02055 PF02441 Flavoprotein KHQ31_02060 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal KHQ31_02060 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal KHQ31_02070 PF01520 N-acetylmuramoyl-L-alanine amidase KHQ31_02075 PF13393 Histidyl-tRNA synthetase KHQ31_02075 PF03129 Anticodon binding domain KHQ31_02080 PF02938 GAD domain KHQ31_02080 PF00152 tRNA synthetases class II (D, K and N) KHQ31_02080 PF01336 OB-fold nucleic acid binding domain KHQ31_02085 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ31_02085 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ31_02090 PF01165 Ribosomal protein S21 KHQ31_02095 PF09424 Yqey-like protein KHQ31_02100 PF02130 Uncharacterized protein family UPF0054 KHQ31_02105 PF01219 Prokaryotic diacylglycerol kinase KHQ31_02110 PF07650 KH domain KHQ31_02110 PF01926 50S ribosome-binding GTPase KHQ31_02115 PF11967 Recombination protein O N terminal KHQ31_02115 PF02565 Recombination protein O C terminal KHQ31_02120 PF02091 Glycyl-tRNA synthetase alpha subunit KHQ31_02125 PF02092 Glycyl-tRNA synthetase beta subunit KHQ31_02135 PF01116 Fructose-bisphosphate aldolase class-II KHQ31_02140 PF00230 Major intrinsic protein KHQ31_02155 PF03741 Integral membrane protein TerC family KHQ31_02160 PF10282 Lactonase, 7-bladed beta-propeller KHQ31_02165 PF00588 SpoU rRNA Methylase family KHQ31_02170 PF17854 FtsK alpha domain KHQ31_02170 PF09397 Ftsk gamma domain KHQ31_02170 PF01580 FtsK/SpoIIIE family KHQ31_02175 PF13732 Domain of unknown function (DUF4162) KHQ31_02175 PF00005 ABC transporter KHQ31_02185 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ31_02195 PF01541 GIY-YIG catalytic domain KHQ31_02195 PF02151 UvrB/uvrC motif KHQ31_02195 PF08459 UvrC Helix-hairpin-helix N-terminal KHQ31_02200 PF09269 Domain of unknown function (DUF1967) KHQ31_02200 PF01018 GTP1/OBG KHQ31_02200 PF01926 50S ribosome-binding GTPase KHQ31_02210 PF09186 Domain of unknown function (DUF1949) KHQ31_02210 PF01205 Uncharacterized protein family UPF0029 KHQ31_02215 PF02567 Phenazine biosynthesis-like protein KHQ31_02220 PF07690 Major Facilitator Superfamily KHQ31_02225 PF00571 CBS domain KHQ31_02225 PF00478 IMP dehydrogenase / GMP reductase domain KHQ31_02230 PF07499 RuvA, C-terminal domain KHQ31_02230 PF01330 RuvA N terminal domain KHQ31_02235 PF05491 RuvB C-terminal winged helix domain KHQ31_02235 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ31_02235 PF17864 RuvB AAA lid domain KHQ31_02240 PF02547 Queuosine biosynthesis protein KHQ31_02280 PF01702 Queuine tRNA-ribosyltransferase KHQ31_02285 PF02699 Preprotein translocase subunit KHQ31_02290 PF00817 impB/mucB/samB family KHQ31_02290 PF11799 impB/mucB/samB family C-terminal domain KHQ31_02295 PF01368 DHH family KHQ31_02295 PF02272 DHHA1 domain KHQ31_02300 PF00270 DEAD/DEAH box helicase KHQ31_02300 PF00271 Helicase conserved C-terminal domain KHQ31_02305 PF12464 Maltose acetyltransferase KHQ31_02305 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ31_02310 PF02272 DHHA1 domain KHQ31_02310 PF01411 tRNA synthetases class II (A) KHQ31_02310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ31_02315 PF06135 IreB regulatory phosphoprotein KHQ31_02320 PF03652 Holliday junction resolvase KHQ31_02325 PF06949 Protein of unknown function (DUF1292) KHQ31_02330 PF06949 Protein of unknown function (DUF1292) KHQ31_02335 PF10531 SLBB domain KHQ31_02340 PF03772 Competence protein KHQ31_02340 PF00753 Metallo-beta-lactamase superfamily KHQ31_02345 PF06144 DNA polymerase III, delta subunit KHQ31_02350 PF00312 Ribosomal protein S15 KHQ31_02355 PF01649 Ribosomal protein S20 KHQ31_02370 PF00753 Metallo-beta-lactamase superfamily KHQ31_02370 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ31_02370 PF17770 Ribonuclease J C-terminal domain KHQ31_02380 PF03143 Elongation factor Tu C-terminal domain KHQ31_02380 PF00009 Elongation factor Tu GTP binding domain KHQ31_02380 PF03144 Elongation factor Tu domain 2 KHQ31_02390 PF03613 PTS system mannose/fructose/sorbose family IID component KHQ31_02395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ31_02395 PF05697 Bacterial trigger factor protein (TF) KHQ31_02395 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ31_02400 PF07724 AAA domain (Cdc48 subfamily) KHQ31_02400 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ31_02400 PF06689 ClpX C4-type zinc finger KHQ31_02405 PF01926 50S ribosome-binding GTPase KHQ31_02420 PF00488 MutS domain V KHQ31_02420 PF01713 Smr domain KHQ31_02425 PF00085 Thioredoxin KHQ31_02435 PF01177 Asp/Glu/Hydantoin racemase KHQ31_02440 PF01725 Ham1 family KHQ31_02450 PF04607 Region found in RelA / SpoT proteins KHQ31_02455 PF01513 ATP-NAD kinase KHQ31_02460 PF00849 RNA pseudouridylate synthase KHQ31_02465 PF03448 MgtE intracellular N domain KHQ31_02465 PF00571 CBS domain KHQ31_02465 PF01769 Divalent cation transporter KHQ31_02470 PF02576 RimP N-terminal domain KHQ31_02470 PF17384 RimP C-terminal SH3 domain KHQ31_02475 PF13184 NusA-like KH domain KHQ31_02475 PF08529 NusA N-terminal domain KHQ31_02475 PF00575 S1 RNA binding domain KHQ31_02480 PF04296 Protein of unknown function (DUF448) KHQ31_02485 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KHQ31_02490 PF00009 Elongation factor Tu GTP binding domain KHQ31_02490 PF11987 Translation-initiation factor 2 KHQ31_02490 PF04760 Translation initiation factor IF-2, N-terminal region KHQ31_02495 PF02033 Ribosome-binding factor A KHQ31_02500 PF00893 Small Multidrug Resistance protein KHQ31_02505 PF07859 alpha/beta hydrolase fold KHQ31_02510 PF13302 Acetyltransferase (GNAT) domain KHQ31_02515 PF16198 tRNA pseudouridylate synthase B C-terminal domain KHQ31_02515 PF01509 TruB family pseudouridylate synthase (N terminal domain) KHQ31_02525 PF06574 FAD synthetase KHQ31_02525 PF01687 Riboflavin kinase KHQ31_02530 PF05670 NFACT protein RNA binding domain KHQ31_02545 PF03932 CutC family KHQ31_02550 PF02645 Uncharacterised protein, DegV family COG1307 KHQ31_02555 PF02645 Uncharacterised protein, DegV family COG1307 KHQ31_02560 PF09330 D-lactate dehydrogenase, membrane binding KHQ31_02560 PF01565 FAD binding domain KHQ31_02565 PF06855 YozE SAM-like fold KHQ31_02570 PF01926 50S ribosome-binding GTPase KHQ31_02575 PF01351 Ribonuclease HII KHQ31_02580 PF02481 DNA recombination-mediator protein A KHQ31_02580 PF17782 DprA winged helix domain KHQ31_02590 PF01131 DNA topoisomerase KHQ31_02590 PF01751 Toprim domain KHQ31_02590 PF01396 Topoisomerase DNA binding C4 zinc finger KHQ31_02595 PF02899 Phage integrase, N-terminal SAM-like domain KHQ31_02595 PF00589 Phage integrase family KHQ31_02605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KHQ31_02605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ31_02610 PF07690 Major Facilitator Superfamily KHQ31_02625 PF00480 ROK family KHQ31_02630 PF00232 Glycosyl hydrolase family 1 KHQ31_02650 PF07690 Major Facilitator Superfamily KHQ31_02655 PF02660 Glycerol-3-phosphate acyltransferase KHQ31_02660 PF00204 DNA gyrase B KHQ31_02660 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ31_02660 PF01751 Toprim domain KHQ31_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_02665 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ31_02665 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ31_02685 PF01368 DHH family KHQ31_02685 PF02833 DHHA2 domain KHQ31_02710 PF00005 ABC transporter KHQ31_02710 PF00571 CBS domain KHQ31_02715 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_02740 PF13419 Haloacid dehalogenase-like hydrolase KHQ31_02750 PF00753 Metallo-beta-lactamase superfamily KHQ31_02750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ31_02750 PF17770 Ribonuclease J C-terminal domain KHQ31_02755 PF07288 Protein of unknown function (DUF1447) KHQ31_02765 PF01327 Polypeptide deformylase KHQ31_02770 PF05256 Uncharacterised protein family (UPF0223) KHQ31_02775 PF00459 Inositol monophosphatase family KHQ31_02780 PF00679 Elongation factor G C-terminus KHQ31_02780 PF14492 Elongation Factor G, domain II KHQ31_02780 PF00009 Elongation factor Tu GTP binding domain KHQ31_02780 PF03144 Elongation factor Tu domain 2 KHQ31_02785 PF01098 Cell cycle protein KHQ31_02790 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KHQ31_02800 PF01467 Cytidylyltransferase-like KHQ31_02805 PF13180 PDZ domain KHQ31_02805 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ31_02810 PF07690 Major Facilitator Superfamily KHQ31_02815 PF08275 DNA primase catalytic core, N-terminal domain KHQ31_02815 PF01807 CHC2 zinc finger KHQ31_02815 PF10410 DnaB-helicase binding domain of primase KHQ31_02820 PF03979 Sigma-70 factor, region 1.1 KHQ31_02820 PF00140 Sigma-70 factor, region 1.2 KHQ31_02820 PF04542 Sigma-70 region 2 KHQ31_02820 PF04539 Sigma-70 region 3 KHQ31_02820 PF04545 Sigma-70, region 4 KHQ31_02825 PF07690 Major Facilitator Superfamily KHQ31_02830 PF00486 Transcriptional regulatory protein, C terminal KHQ31_02830 PF00072 Response regulator receiver domain KHQ31_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_02835 PF00989 PAS fold KHQ31_02835 PF16736 Single Cache-like KHQ31_02835 PF00512 His Kinase A (phospho-acceptor) domain KHQ31_02840 PF00485 Phosphoribulokinase / Uridine kinase family KHQ31_02845 PF14794 Domain of unknown function (DUF4479) KHQ31_02845 PF01588 Putative tRNA binding domain KHQ31_02855 PF01225 Mur ligase family, catalytic domain KHQ31_02855 PF02875 Mur ligase family, glutamate ligase domain KHQ31_02855 PF08245 Mur ligase middle domain KHQ31_02860 PF01027 Inhibitor of apoptosis-promoting Bax1 KHQ31_02865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ31_02865 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ31_02865 PF00476 DNA polymerase family A KHQ31_02885 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ31_02885 PF06827 Zinc finger found in FPG and IleRS KHQ31_02885 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ31_02890 PF01121 Dephospho-CoA kinase KHQ31_02900 PF07319 Primosomal protein DnaI N-terminus KHQ31_02900 PF01695 IstB-like ATP binding protein KHQ31_02915 PF00486 Transcriptional regulatory protein, C terminal KHQ31_02915 PF00072 Response regulator receiver domain KHQ31_02920 PF18719 ArlS sensor domain KHQ31_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_02920 PF00512 His Kinase A (phospho-acceptor) domain KHQ31_02930 PF13520 Amino acid permease KHQ31_02935 PF01053 Cys/Met metabolism PLP-dependent enzyme KHQ31_02945 PF00817 impB/mucB/samB family KHQ31_02945 PF11799 impB/mucB/samB family C-terminal domain KHQ31_02945 PF11798 IMS family HHH motif KHQ31_02955 PF00005 ABC transporter KHQ31_02955 PF12848 ABC transporter KHQ31_02955 PF16326 ABC transporter C-terminal domain KHQ31_02970 PF13460 NAD(P)H-binding KHQ31_02975 PF00199 Catalase KHQ31_02975 PF06628 Catalase-related immune-responsive KHQ31_02990 PF01070 FMN-dependent dehydrogenase KHQ31_03000 PF13936 Helix-turn-helix domain KHQ31_03000 PF00665 Integrase core domain KHQ31_03020 PF00005 ABC transporter KHQ31_03020 PF02687 FtsX-like permease family KHQ31_03020 PF12704 MacB-like periplasmic core domain KHQ31_03025 PF02687 FtsX-like permease family KHQ31_03035 PF13302 Acetyltransferase (GNAT) domain KHQ31_03040 PF01451 Low molecular weight phosphotyrosine protein phosphatase KHQ31_03065 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KHQ31_03065 PF05257 CHAP domain KHQ31_03100 PF04203 Sortase domain KHQ31_03165 PF13460 NAD(P)H-binding KHQ31_03205 PF00356 Bacterial regulatory proteins, lacI family KHQ31_03210 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_03215 PF03006 Haemolysin-III related KHQ31_03225 PF08279 HTH domain KHQ31_03225 PF03099 Biotin/lipoate A/B protein ligase family KHQ31_03225 PF02237 Biotin protein ligase C terminal domain KHQ31_03230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KHQ31_03235 PF01039 Carboxyl transferase domain KHQ31_03240 PF02785 Biotin carboxylase C-terminal domain KHQ31_03240 PF00289 Biotin carboxylase, N-terminal domain KHQ31_03240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ31_03245 PF07977 FabA-like domain KHQ31_03250 PF00364 Biotin-requiring enzyme KHQ31_03255 PF00109 Beta-ketoacyl synthase, N-terminal domain KHQ31_03255 PF02801 Beta-ketoacyl synthase, C-terminal domain KHQ31_03265 PF00698 Acyl transferase domain KHQ31_03270 PF03060 Nitronate monooxygenase KHQ31_03275 PF00550 Phosphopantetheine attachment site KHQ31_03280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ31_03280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ31_03290 PF07977 FabA-like domain KHQ31_03295 PF01757 Acyltransferase family KHQ31_03300 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ31_03300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ31_03325 PF08543 Phosphomethylpyrimidine kinase KHQ31_03330 PF01266 FAD dependent oxidoreductase KHQ31_03335 PF05690 Thiazole biosynthesis protein ThiG KHQ31_03340 PF00899 ThiF family KHQ31_03340 PF00581 Rhodanese-like domain KHQ31_03350 PF02581 Thiamine monophosphate synthase KHQ31_03360 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ31_03380 PF00990 Diguanylate cyclase, GGDEF domain KHQ31_03380 PF17156 Gammaproteobacterial periplasmic sensor domain KHQ31_03390 PF10702 Protein of unknown function (DUF2507) KHQ31_03395 PF02390 Putative methyltransferase KHQ31_03405 PF00005 ABC transporter KHQ31_03410 PF01230 HIT domain KHQ31_03420 PF00271 Helicase conserved C-terminal domain KHQ31_03420 PF04851 Type III restriction enzyme, res subunit KHQ31_03420 PF02151 UvrB/uvrC motif KHQ31_03420 PF17757 UvrB interaction domain KHQ31_03420 PF12344 Ultra-violet resistance protein B KHQ31_03440 PF00533 BRCA1 C Terminus (BRCT) domain KHQ31_03440 PF01653 NAD-dependent DNA ligase adenylation domain KHQ31_03440 PF03120 NAD-dependent DNA ligase OB-fold domain KHQ31_03440 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KHQ31_03440 PF12826 Helix-hairpin-helix motif KHQ31_03445 PF13361 UvrD-like helicase C-terminal domain KHQ31_03445 PF00580 UvrD/REP helicase N-terminal domain KHQ31_03480 PF04865 Baseplate J-like protein KHQ31_03525 PF17482 Phage tail sheath C-terminal domain KHQ31_03525 PF04984 Phage tail sheath protein subtilisin-like domain KHQ31_03525 PF17481 Phage tail sheath protein beta-sandwich domain KHQ31_03530 PF00886 Ribosomal protein S16 KHQ31_03580 PF17288 Terminase RNAseH like domain KHQ31_03580 PF04466 Phage terminase large subunit KHQ31_03655 PF01695 IstB-like ATP binding protein KHQ31_03665 PF00436 Single-strand binding protein family KHQ31_03675 PF03837 RecT family KHQ31_03700 PF01381 Helix-turn-helix KHQ31_03715 PF10548 P22AR C-terminal domain KHQ31_03715 PF08346 AntA/AntB antirepressor KHQ31_03755 PF08460 Bacterial SH3 domain KHQ31_03755 PF01520 N-acetylmuramoyl-L-alanine amidase KHQ31_03755 PF05257 CHAP domain KHQ31_03870 PF02086 D12 class N6 adenine-specific DNA methyltransferase KHQ31_03895 PF01195 Peptidyl-tRNA hydrolase KHQ31_03990 PF02899 Phage integrase, N-terminal SAM-like domain KHQ31_03990 PF00589 Phage integrase family KHQ31_03995 PF02926 THUMP domain KHQ31_03995 PF01170 Putative RNA methylase family UPF0020 KHQ31_04005 PF05103 DivIVA protein KHQ31_04010 PF06908 YspA SLOG family KHQ31_04015 PF03838 Recombination protein U KHQ31_04020 PF00912 Transglycosylase KHQ31_04020 PF00905 Penicillin binding protein transpeptidase domain KHQ31_04025 PF01473 Putative cell wall binding repeat KHQ31_04025 PF02324 Glycosyl hydrolase family 70 KHQ31_04050 PF00152 tRNA synthetases class II (D, K and N) KHQ31_04050 PF01336 OB-fold nucleic acid binding domain KHQ31_04060 PF13307 Helicase C-terminal domain KHQ31_04060 PF04851 Type III restriction enzyme, res subunit KHQ31_04060 PF00929 Exonuclease KHQ31_04065 PF14659 Phage integrase, N-terminal SAM-like domain KHQ31_04065 PF00589 Phage integrase family KHQ31_04125 PF10509 Galactokinase galactose-binding signature KHQ31_04125 PF08544 GHMP kinases C terminal KHQ31_04125 PF00288 GHMP kinases N terminal domain KHQ31_04135 PF08544 GHMP kinases C terminal KHQ31_04135 PF00288 GHMP kinases N terminal domain KHQ31_04140 PF01070 FMN-dependent dehydrogenase KHQ31_04150 PF00085 Thioredoxin KHQ31_04160 PF02096 60Kd inner membrane protein KHQ31_04170 PF01625 Peptide methionine sulfoxide reductase KHQ31_04190 PF00334 Nucleoside diphosphate kinase KHQ31_04195 PF13520 Amino acid permease KHQ31_04205 PF01467 Cytidylyltransferase-like KHQ31_04210 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_04215 PF03601 Conserved hypothetical protein 698 KHQ31_04225 PF00535 Glycosyl transferase family 2 KHQ31_04235 PF02803 Thiolase, C-terminal domain KHQ31_04235 PF00108 Thiolase, N-terminal domain KHQ31_04255 PF03649 Uncharacterised protein family (UPF0014) KHQ31_04260 PF00005 ABC transporter KHQ31_04265 PF12697 Alpha/beta hydrolase family KHQ31_04270 PF04198 Putative sugar-binding domain KHQ31_04280 PF00005 ABC transporter KHQ31_04285 PF00128 Alpha amylase, catalytic domain KHQ31_04285 PF16657 Maltogenic Amylase, C-terminal domain KHQ31_04295 PF00356 Bacterial regulatory proteins, lacI family KHQ31_04300 PF04914 DltD protein KHQ31_04305 PF00550 Phosphopantetheine attachment site KHQ31_04310 PF03062 MBOAT, membrane-bound O-acyltransferase family KHQ31_04315 PF00501 AMP-binding enzyme KHQ31_04315 PF13193 AMP-binding enzyme C-terminal domain KHQ31_04335 PF00679 Elongation factor G C-terminus KHQ31_04335 PF00009 Elongation factor Tu GTP binding domain KHQ31_04335 PF06421 GTP-binding protein LepA C-terminus KHQ31_04350 PF08240 Alcohol dehydrogenase GroES-like domain KHQ31_04350 PF16912 Glucose dehydrogenase C-terminus KHQ31_04355 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KHQ31_04360 PF04991 LicD family KHQ31_04365 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_04375 PF06177 QueT transporter KHQ31_04385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ31_04385 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ31_04395 PF00253 Ribosomal protein S14p/S29e KHQ31_04400 PF00471 Ribosomal protein L33 KHQ31_04415 PF00871 Acetokinase family KHQ31_04420 PF07687 Peptidase dimerisation domain KHQ31_04420 PF01546 Peptidase family M20/M25/M40 KHQ31_04425 PF01784 NIF3 (NGG1p interacting factor 3) KHQ31_04430 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KHQ31_04460 PF13344 Haloacid dehalogenase-like hydrolase KHQ31_04460 PF00293 NUDIX domain KHQ31_04465 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ31_04465 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ31_04470 PF07690 Major Facilitator Superfamily KHQ31_04475 PF07155 ECF-type riboflavin transporter, S component KHQ31_04480 PF08543 Phosphomethylpyrimidine kinase KHQ31_04500 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_04500 PF00535 Glycosyl transferase family 2 KHQ31_04505 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_04505 PF00535 Glycosyl transferase family 2 KHQ31_04510 PF13439 Glycosyltransferase Family 4 KHQ31_04510 PF00534 Glycosyl transferases group 1 KHQ31_04520 PF00216 Bacterial DNA-binding protein KHQ31_04525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KHQ31_04525 PF01926 50S ribosome-binding GTPase KHQ31_04530 PF00575 S1 RNA binding domain KHQ31_04535 PF02224 Cytidylate kinase KHQ31_04545 PF00270 DEAD/DEAH box helicase KHQ31_04545 PF00271 Helicase conserved C-terminal domain KHQ31_04555 PF12822 ECF transporter, substrate-specific component KHQ31_04560 PF00849 RNA pseudouridylate synthase KHQ31_04560 PF01479 S4 domain KHQ31_04565 PF04079 Segregation and condensation complex subunit ScpB KHQ31_04570 PF02616 Segregation and condensation protein ScpA KHQ31_04575 PF00583 Acetyltransferase (GNAT) family KHQ31_04580 PF00589 Phage integrase family KHQ31_04580 PF02899 Phage integrase, N-terminal SAM-like domain KHQ31_04585 PF13509 S1 domain KHQ31_04585 PF17783 CvfB-like winged helix domain KHQ31_04595 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_04600 PF00230 Major intrinsic protein KHQ31_04605 PF00121 Triosephosphate isomerase KHQ31_04610 PF01266 FAD dependent oxidoreductase KHQ31_04610 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KHQ31_04615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ31_04615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ31_04620 PF05651 Putative sugar diacid recognition KHQ31_04620 PF17853 GGDEF-like domain KHQ31_04620 PF13556 PucR C-terminal helix-turn-helix domain KHQ31_04625 PF00999 Sodium/hydrogen exchanger family KHQ31_04635 PF13291 ACT domain KHQ31_04635 PF02824 TGS domain KHQ31_04635 PF04607 Region found in RelA / SpoT proteins KHQ31_04640 PF14579 Helix-hairpin-helix motif KHQ31_04640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ31_04640 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ31_04640 PF01336 OB-fold nucleic acid binding domain KHQ31_04640 PF02811 PHP domain KHQ31_04650 PF00186 Dihydrofolate reductase KHQ31_04655 PF00005 ABC transporter KHQ31_04655 PF16326 ABC transporter C-terminal domain KHQ31_04655 PF12848 ABC transporter KHQ31_04660 PF01743 Poly A polymerase head domain KHQ31_04660 PF12627 Probable RNA and SrmB- binding site of polymerase A KHQ31_04660 PF13735 tRNA nucleotidyltransferase domain 2 putative KHQ31_04675 PF18766 SWI2/SNF2 ATPase KHQ31_04675 PF12008 Type I restriction and modification enzyme - subunit R C terminal KHQ31_04675 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KHQ31_04690 PF12161 HsdM N-terminal domain KHQ31_04690 PF02384 N-6 DNA Methylase KHQ31_04705 PF01380 SIS domain KHQ31_04725 PF03816 Cell envelope-related transcriptional attenuator domain KHQ31_04730 PF01765 Ribosome recycling factor KHQ31_04735 PF00696 Amino acid kinase family KHQ31_04740 PF00889 Elongation factor TS KHQ31_05005 PF01381 Helix-turn-helix KHQ31_05050 PF00318 Ribosomal protein S2 KHQ31_05055 PF01541 GIY-YIG catalytic domain KHQ31_05060 PF05175 Methyltransferase small domain KHQ31_05065 PF01553 Acyltransferase KHQ31_05070 PF03672 Uncharacterised protein family (UPF0154) KHQ31_05075 PF05979 Bacterial protein of unknown function (DUF896) KHQ31_05080 PF00156 Phosphoribosyl transferase domain KHQ31_05085 PF02272 DHHA1 domain KHQ31_05085 PF17768 RecJ OB domain KHQ31_05085 PF01368 DHH family KHQ31_05085 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KHQ31_05090 PF00753 Metallo-beta-lactamase superfamily KHQ31_05090 PF12706 Beta-lactamase superfamily domain KHQ31_05105 PF00226 DnaJ domain KHQ31_05105 PF00684 DnaJ central domain KHQ31_05105 PF01556 DnaJ C terminal domain KHQ31_05110 PF00012 Hsp70 protein KHQ31_05115 PF01025 GrpE KHQ31_05120 PF01628 HrcA protein C terminal domain KHQ31_05120 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KHQ31_05135 PF00535 Glycosyl transferase family 2 KHQ31_05145 PF02397 Bacterial sugar transferase KHQ31_05150 PF00557 Metallopeptidase family M24 KHQ31_05155 PF00535 Glycosyl transferase family 2 KHQ31_05155 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ31_05160 PF01061 ABC-2 type transporter KHQ31_05165 PF00005 ABC transporter KHQ31_05165 PF01476 LysM domain KHQ31_05175 PF02073 Thermophilic metalloprotease (M29) KHQ31_05180 PF00313 'Cold-shock' DNA-binding domain KHQ31_05190 PF07690 Major Facilitator Superfamily KHQ31_05200 PF00485 Phosphoribulokinase / Uridine kinase family KHQ31_05205 PF13538 UvrD-like helicase C-terminal domain KHQ31_05210 PF00154 recA bacterial DNA recombination protein KHQ31_05215 PF02464 Competence-damaged protein KHQ31_05215 PF18146 Damage-inducible protein CinA KH domain KHQ31_05215 PF00994 Probable molybdopterin binding domain KHQ31_05220 PF01066 CDP-alcohol phosphatidyltransferase KHQ31_05225 PF13464 Domain of unknown function (DUF4115) KHQ31_05230 PF00675 Insulinase (Peptidase family M16) KHQ31_05230 PF05193 Peptidase M16 inactive domain KHQ31_05235 PF05193 Peptidase M16 inactive domain KHQ31_05235 PF00675 Insulinase (Peptidase family M16) KHQ31_05240 PF13396 Phospholipase_D-nuclease N-terminal KHQ31_05240 PF13091 PLD-like domain KHQ31_05255 PF13411 MerR HTH family regulatory protein KHQ31_05255 PF07739 TipAS antibiotic-recognition domain KHQ31_05260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ31_05260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ31_05265 PF01966 HD domain KHQ31_05270 PF13514 AAA domain KHQ31_05270 PF13514 AAA domain KHQ31_05280 PF06133 Control of competence regulator ComK, YlbF/YmcA KHQ31_05285 PF00912 Transglycosylase KHQ31_05285 PF00905 Penicillin binding protein transpeptidase domain KHQ31_05290 PF01316 Arginine repressor, DNA binding domain KHQ31_05290 PF02863 Arginine repressor, C-terminal domain KHQ31_05295 PF03485 Arginyl tRNA synthetase N terminal domain KHQ31_05295 PF05746 DALR anticodon binding domain KHQ31_05295 PF00750 tRNA synthetases class I (R) KHQ31_05305 PF02875 Mur ligase family, glutamate ligase domain KHQ31_05305 PF08245 Mur ligase middle domain KHQ31_05310 PF01725 Ham1 family KHQ31_05320 PF00781 Diacylglycerol kinase catalytic domain KHQ31_05325 PF02934 GatB/GatE catalytic domain KHQ31_05325 PF02637 GatB domain KHQ31_05330 PF01425 Amidase KHQ31_05335 PF02686 Glu-tRNAGln amidotransferase C subunit KHQ31_05340 PF01189 16S rRNA methyltransferase RsmB/F KHQ31_05340 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KHQ31_05340 PF17126 RsmF rRNA methyltransferase first C-terminal domain KHQ31_05385 PF00248 Aldo/keto reductase family KHQ31_05390 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ31_05390 PF14572 Phosphoribosyl synthetase-associated domain KHQ31_05395 PF01180 Dihydroorotate dehydrogenase KHQ31_05400 PF09515 Thiamine transporter protein (Thia_YuaJ) KHQ31_05405 PF01487 Type I 3-dehydroquinase KHQ31_05410 PF01202 Shikimate kinase KHQ31_05415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ31_05420 PF01264 Chorismate synthase KHQ31_05425 PF01761 3-dehydroquinate synthase KHQ31_05430 PF18152 DAHP synthase ferredoxin-like domain KHQ31_05430 PF00793 DAHP synthetase I family KHQ31_05435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KHQ31_05435 PF01488 Shikimate / quinate 5-dehydrogenase KHQ31_05435 PF08501 Shikimate dehydrogenase substrate binding domain KHQ31_05455 PF12822 ECF transporter, substrate-specific component KHQ31_05460 PF00155 Aminotransferase class I and II KHQ31_05470 PF00155 Aminotransferase class I and II KHQ31_05480 PF00356 Bacterial regulatory proteins, lacI family KHQ31_05485 PF00288 GHMP kinases N terminal domain KHQ31_05485 PF08544 GHMP kinases C terminal KHQ31_05490 PF12822 ECF transporter, substrate-specific component KHQ31_05505 PF00950 ABC 3 transport family KHQ31_05505 PF02742 Iron dependent repressor, metal binding and dimerisation domain KHQ31_05515 PF04203 Sortase domain KHQ31_05520 PF02629 CoA binding domain KHQ31_05520 PF06971 Putative DNA-binding protein N-terminus KHQ31_05525 PF00270 DEAD/DEAH box helicase KHQ31_05525 PF00271 Helicase conserved C-terminal domain KHQ31_05530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ31_05535 PF01938 TRAM domain KHQ31_05535 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ31_05540 PF01435 Peptidase family M48 KHQ31_05545 PF04011 LemA family KHQ31_05565 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ31_05565 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ31_05565 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ31_05565 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ31_05570 PF03275 UDP-galactopyranose mutase KHQ31_05575 PF10397 Adenylosuccinate lyase C-terminus KHQ31_05575 PF00206 Lyase KHQ31_05590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ31_05590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KHQ31_05590 PF02142 MGS-like domain KHQ31_05595 PF00117 Glutamine amidotransferase class-I KHQ31_05595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KHQ31_05600 PF00156 Phosphoribosyl transferase domain KHQ31_05605 PF01479 S4 domain KHQ31_05605 PF00849 RNA pseudouridylate synthase KHQ31_05615 PF03553 Na+/H+ antiporter family KHQ31_05620 PF00324 Amino acid permease KHQ31_05625 PF01197 Ribosomal protein L31 KHQ31_05630 PF06421 GTP-binding protein LepA C-terminus KHQ31_05630 PF00679 Elongation factor G C-terminus KHQ31_05630 PF00009 Elongation factor Tu GTP binding domain KHQ31_05630 PF03144 Elongation factor Tu domain 2 KHQ31_05635 PF00162 Phosphoglycerate kinase KHQ31_05640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KHQ31_05640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KHQ31_05665 PF02872 5'-nucleotidase, C-terminal domain KHQ31_05665 PF00149 Calcineurin-like phosphoesterase KHQ31_05670 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_05675 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_05680 PF00005 ABC transporter KHQ31_05700 PF01223 DNA/RNA non-specific endonuclease KHQ31_05710 PF03613 PTS system mannose/fructose/sorbose family IID component KHQ31_05715 PF03609 PTS system sorbose-specific iic component KHQ31_05720 PF03830 PTS system sorbose subfamily IIB component KHQ31_05720 PF03610 PTS system fructose IIA component KHQ31_05795 PF00575 S1 RNA binding domain KHQ31_05800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ31_05805 PF09335 SNARE associated Golgi protein KHQ31_05810 PF01192 RNA polymerase Rpb6 KHQ31_05815 PF00625 Guanylate kinase KHQ31_05820 PF13476 AAA domain KHQ31_05825 PF01316 Arginine repressor, DNA binding domain KHQ31_05825 PF02863 Arginine repressor, C-terminal domain KHQ31_05830 PF01479 S4 domain KHQ31_05830 PF01728 FtsJ-like methyltransferase KHQ31_05835 PF00348 Polyprenyl synthetase KHQ31_05840 PF02609 Exonuclease VII small subunit KHQ31_05845 PF02601 Exonuclease VII, large subunit KHQ31_05845 PF13742 OB-fold nucleic acid binding domain KHQ31_05850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KHQ31_05850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KHQ31_05855 PF07155 ECF-type riboflavin transporter, S component KHQ31_05865 PF02388 FemAB family KHQ31_05885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KHQ31_05890 PF03129 Anticodon binding domain KHQ31_05890 PF02824 TGS domain KHQ31_05890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ31_05890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ31_05900 PF01119 DNA mismatch repair protein, C-terminal domain KHQ31_05900 PF08676 MutL C terminal dimerisation domain KHQ31_05905 PF00488 MutS domain V KHQ31_05905 PF05190 MutS family domain IV KHQ31_05905 PF05188 MutS domain II KHQ31_05905 PF01624 MutS domain I KHQ31_05905 PF05192 MutS domain III KHQ31_05915 PF05636 HIGH Nucleotidyl Transferase KHQ31_05930 PF01966 HD domain KHQ31_05935 PF01467 Cytidylyltransferase-like KHQ31_05945 PF01926 50S ribosome-binding GTPase KHQ31_05955 PF07478 D-ala D-ala ligase C-terminus KHQ31_05955 PF01820 D-ala D-ala ligase N-terminus KHQ31_05965 PF13520 Amino acid permease KHQ31_05970 PF00118 TCP-1/cpn60 chaperonin family KHQ31_05975 PF00166 Chaperonin 10 Kd subunit KHQ31_05980 PF12848 ABC transporter KHQ31_05980 PF00005 ABC transporter KHQ31_05980 PF16326 ABC transporter C-terminal domain KHQ31_05985 PF02875 Mur ligase family, glutamate ligase domain KHQ31_05985 PF08245 Mur ligase middle domain KHQ31_05990 PF08264 Anticodon-binding domain of tRNA KHQ31_05990 PF00133 tRNA synthetases class I (I, L, M and V) KHQ31_05990 PF10458 Valyl tRNA synthetase tRNA binding arm KHQ31_05995 PF01810 LysE type translocator KHQ31_06000 PF00582 Universal stress protein family KHQ31_06015 PF16193 AAA C-terminal domain KHQ31_06015 PF12002 MgsA AAA+ ATPase C terminal KHQ31_06015 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ31_06030 PF03144 Elongation factor Tu domain 2 KHQ31_06030 PF16658 Class II release factor RF3, C-terminal domain KHQ31_06030 PF00009 Elongation factor Tu GTP binding domain KHQ31_06040 PF04167 Protein of unknown function (DUF402) KHQ31_06045 PF02631 RecX family KHQ31_06050 PF01895 PhoU domain KHQ31_06055 PF00005 ABC transporter KHQ31_06060 PF00005 ABC transporter KHQ31_06065 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_06070 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_06075 PF12849 PBP superfamily domain KHQ31_06090 PF01906 Putative heavy-metal-binding KHQ31_06095 PF13344 Haloacid dehalogenase-like hydrolase KHQ31_06100 PF06265 Protein of unknown function (DUF1027) KHQ31_06105 PF02872 5'-nucleotidase, C-terminal domain KHQ31_06115 PF00557 Metallopeptidase family M24 KHQ31_06115 PF01321 Creatinase/Prolidase N-terminal domain KHQ31_06120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KHQ31_06120 PF13378 Enolase C-terminal domain-like KHQ31_06135 PF00561 alpha/beta hydrolase fold KHQ31_06140 PF16582 Middle domain of thiamine pyrophosphate KHQ31_06140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ31_06140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ31_06145 PF00425 chorismate binding enzyme KHQ31_06155 PF00884 Sulfatase KHQ31_06160 PF13520 Amino acid permease KHQ31_06165 PF03390 2-hydroxycarboxylate transporter family KHQ31_06170 PF07690 Major Facilitator Superfamily KHQ31_06180 PF00107 Zinc-binding dehydrogenase KHQ31_06180 PF08240 Alcohol dehydrogenase GroES-like domain KHQ31_06185 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KHQ31_06185 PF02885 Glycosyl transferase family, helical bundle domain KHQ31_06185 PF00591 Glycosyl transferase family, a/b domain KHQ31_06190 PF01048 Phosphorylase superfamily KHQ31_06195 PF01676 Metalloenzyme superfamily KHQ31_06200 PF01791 DeoC/LacD family aldolase KHQ31_06205 PF02378 Phosphotransferase system, EIIC KHQ31_06215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KHQ31_06220 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KHQ31_06235 PF00005 ABC transporter KHQ31_06235 PF17760 UvrA interaction domain KHQ31_06235 PF17755 UvrA DNA-binding domain KHQ31_06240 PF00005 ABC transporter KHQ31_06245 PF01032 FecCD transport family KHQ31_06250 PF01497 Periplasmic binding protein KHQ31_06265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ31_06265 PF00005 ABC transporter KHQ31_06270 PF00005 ABC transporter KHQ31_06270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ31_06275 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ31_06275 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_06280 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_06285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ31_06300 PF01016 Ribosomal L27 protein KHQ31_06305 PF00829 Ribosomal prokaryotic L21 protein KHQ31_06310 PF07690 Major Facilitator Superfamily KHQ31_06345 PF03951 Glutamine synthetase, beta-Grasp domain KHQ31_06345 PF00120 Glutamine synthetase, catalytic domain KHQ31_06350 PF13411 MerR HTH family regulatory protein KHQ31_06370 PF00480 ROK family KHQ31_06390 PF00905 Penicillin binding protein transpeptidase domain KHQ31_06390 PF03717 Penicillin-binding Protein dimerisation domain KHQ31_06400 PF01272 Transcription elongation factor, GreA/GreB, C-term KHQ31_06400 PF03449 Transcription elongation factor, N-terminal KHQ31_06405 PF02618 YceG-like family KHQ31_06410 PF03483 B3/4 domain KHQ31_06410 PF03147 Ferredoxin-fold anticodon binding domain KHQ31_06410 PF01588 Putative tRNA binding domain KHQ31_06410 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ31_06410 PF03484 tRNA synthetase B5 domain KHQ31_06415 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KHQ31_06415 PF01409 tRNA synthetases class II core domain (F) KHQ31_06420 PF01638 HxlR-like helix-turn-helix KHQ31_06425 PF02388 FemAB family KHQ31_06430 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ31_06430 PF00588 SpoU rRNA Methylase family KHQ31_06445 PF13361 UvrD-like helicase C-terminal domain KHQ31_06445 PF00580 UvrD/REP helicase N-terminal domain KHQ31_06450 PF02463 RecF/RecN/SMC N terminal domain KHQ31_06460 PF03462 PCRF domain KHQ31_06460 PF00472 RF-1 domain KHQ31_06465 PF07517 SecA DEAD-like domain KHQ31_06465 PF01043 SecA preprotein cross-linking domain KHQ31_06465 PF07516 SecA Wing and Scaffold domain KHQ31_06470 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ31_06475 PF18073 Rubredoxin metal binding domain KHQ31_06480 PF00692 dUTPase KHQ31_06485 PF14542 GCN5-related N-acetyl-transferase KHQ31_06495 PF05257 CHAP domain KHQ31_06495 PF01476 LysM domain KHQ31_06500 PF00004 ATPase family associated with various cellular activities (AAA) KHQ31_06500 PF07724 AAA domain (Cdc48 subfamily) KHQ31_06500 PF17871 AAA lid domain KHQ31_06500 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ31_06505 PF08240 Alcohol dehydrogenase GroES-like domain KHQ31_06505 PF00107 Zinc-binding dehydrogenase KHQ31_06510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ31_06510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ31_06510 PF00205 Thiamine pyrophosphate enzyme, central domain KHQ31_06515 PF03306 Alpha-acetolactate decarboxylase KHQ31_06545 PF01783 Ribosomal L32p protein family KHQ31_06555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KHQ31_06555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ31_06560 PF00574 Clp protease KHQ31_06565 PF14527 WhiA LAGLIDADG-like domain KHQ31_06565 PF10298 WhiA N-terminal LAGLIDADG-like domain KHQ31_06565 PF02650 WhiA C-terminal HTH domain KHQ31_06570 PF01933 Uncharacterised protein family UPF0052 KHQ31_06575 PF03668 P-loop ATPase protein family KHQ31_06580 PF00005 ABC transporter KHQ31_06580 PF17755 UvrA DNA-binding domain KHQ31_06580 PF17760 UvrA interaction domain KHQ31_06590 PF02447 GntP family permease KHQ31_06610 PF00380 Ribosomal protein S9/S16 KHQ31_06615 PF00572 Ribosomal protein L13 KHQ31_06620 PF01416 tRNA pseudouridine synthase KHQ31_06625 PF02361 Cobalt transport protein KHQ31_06630 PF00005 ABC transporter KHQ31_06635 PF00005 ABC transporter KHQ31_06640 PF01757 Acyltransferase family KHQ31_06650 PF14759 Reductase C-terminal KHQ31_06650 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ31_06655 PF01297 Zinc-uptake complex component A periplasmic KHQ31_06660 PF00950 ABC 3 transport family KHQ31_06665 PF00005 ABC transporter KHQ31_06670 PF01641 SelR domain KHQ31_06675 PF16320 Ribosomal protein L7/L12 dimerisation domain KHQ31_06675 PF00542 Ribosomal protein L7/L12 C-terminal domain KHQ31_06680 PF00466 Ribosomal protein L10 KHQ31_06685 PF00687 Ribosomal protein L1p/L10e family KHQ31_06690 PF03946 Ribosomal protein L11, N-terminal domain KHQ31_06690 PF00298 Ribosomal protein L11, RNA binding domain KHQ31_06695 PF02357 Transcription termination factor nusG KHQ31_06695 PF00467 KOW motif KHQ31_06705 PF00471 Ribosomal protein L33 KHQ31_06715 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ31_06715 PF00588 SpoU rRNA Methylase family KHQ31_06720 PF00636 Ribonuclease III domain KHQ31_06725 PF01406 tRNA synthetases class I (C) catalytic domain KHQ31_06725 PF09190 DALR domain KHQ31_06730 PF02540 NAD synthase KHQ31_06735 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KHQ31_06735 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KHQ31_06735 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KHQ31_06740 PF01451 Low molecular weight phosphotyrosine protein phosphatase KHQ31_06745 PF03180 NLPA lipoprotein KHQ31_06750 PF00005 ABC transporter KHQ31_06750 PF09383 NIL domain KHQ31_06755 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_06760 PF01196 Ribosomal protein L17 KHQ31_06765 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KHQ31_06765 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KHQ31_06765 PF01000 RNA polymerase Rpb3/RpoA insert domain KHQ31_06770 PF00411 Ribosomal protein S11 KHQ31_06775 PF00416 Ribosomal protein S13/S18 KHQ31_06780 PF00444 Ribosomal protein L36 KHQ31_06785 PF01176 Translation initiation factor 1A / IF-1 KHQ31_06790 PF05191 Adenylate kinase, active site lid KHQ31_06795 PF00344 SecY translocase KHQ31_06800 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KHQ31_06805 PF00327 Ribosomal protein L30p/L7e KHQ31_06810 PF03719 Ribosomal protein S5, C-terminal domain KHQ31_06810 PF00333 Ribosomal protein S5, N-terminal domain KHQ31_06815 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KHQ31_06820 PF00347 Ribosomal protein L6 KHQ31_06825 PF00410 Ribosomal protein S8 KHQ31_06830 PF00281 Ribosomal protein L5 KHQ31_06830 PF00673 ribosomal L5P family C-terminus KHQ31_06835 PF00467 KOW motif KHQ31_06835 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KHQ31_06840 PF00238 Ribosomal protein L14p/L23e KHQ31_06845 PF00366 Ribosomal protein S17 KHQ31_06850 PF00831 Ribosomal L29 protein KHQ31_06855 PF00252 Ribosomal protein L16p/L10e KHQ31_06860 PF07650 KH domain KHQ31_06860 PF00189 Ribosomal protein S3, C-terminal domain KHQ31_06865 PF00237 Ribosomal protein L22p/L17e KHQ31_06870 PF00203 Ribosomal protein S19 KHQ31_06875 PF03947 Ribosomal Proteins L2, C-terminal domain KHQ31_06875 PF00181 Ribosomal Proteins L2, RNA binding domain KHQ31_06880 PF00276 Ribosomal protein L23 KHQ31_06885 PF00573 Ribosomal protein L4/L1 family KHQ31_06890 PF00297 Ribosomal protein L3 KHQ31_06895 PF00338 Ribosomal protein S10p/S20e KHQ31_06900 PF00348 Polyprenyl synthetase KHQ31_06905 PF00814 Glycoprotease family KHQ31_06920 PF00814 Glycoprotease family KHQ31_06925 PF16363 GDP-mannose 4,6 dehydratase KHQ31_06935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KHQ31_06945 PF06153 Cyclic-di-AMP receptor KHQ31_06950 PF02223 Thymidylate kinase KHQ31_06960 PF13662 Toprim domain KHQ31_06960 PF02132 RecR protein KHQ31_06965 PF02575 YbaB/EbfC DNA-binding family KHQ31_06970 PF12169 DNA polymerase III subunits gamma and tau domain III KHQ31_06980 PF14437 MafB19-like deaminase KHQ31_06985 PF05175 Methyltransferase small domain KHQ31_07020 PF00465 Iron-containing alcohol dehydrogenase KHQ31_07025 PF04997 RNA polymerase Rpb1, domain 1 KHQ31_07025 PF04998 RNA polymerase Rpb1, domain 5 KHQ31_07025 PF00623 RNA polymerase Rpb1, domain 2 KHQ31_07025 PF05000 RNA polymerase Rpb1, domain 4 KHQ31_07025 PF04983 RNA polymerase Rpb1, domain 3 KHQ31_07030 PF04560 RNA polymerase Rpb2, domain 7 KHQ31_07030 PF00562 RNA polymerase Rpb2, domain 6 KHQ31_07030 PF10385 RNA polymerase beta subunit external 1 domain KHQ31_07030 PF04565 RNA polymerase Rpb2, domain 3 KHQ31_07030 PF04561 RNA polymerase Rpb2, domain 2 KHQ31_07030 PF04563 RNA polymerase beta subunit KHQ31_07035 PF17871 AAA lid domain KHQ31_07035 PF02861 Clp amino terminal domain, pathogenicity island component KHQ31_07035 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ31_07035 PF07724 AAA domain (Cdc48 subfamily) KHQ31_07035 PF00004 ATPase family associated with various cellular activities (AAA) KHQ31_07040 PF05848 CtsR N-terminal HTH domain KHQ31_07040 PF17727 CtsR C-terminal dimerization domain KHQ31_07060 PF02403 Seryl-tRNA synthetase N-terminal domain KHQ31_07060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ31_07065 PF01712 Deoxynucleoside kinase KHQ31_07070 PF02557 D-alanyl-D-alanine carboxypeptidase KHQ31_07075 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ31_07075 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ31_07080 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KHQ31_07080 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KHQ31_07085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ31_07085 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ31_07090 PF00231 ATP synthase KHQ31_07095 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ31_07095 PF00306 ATP synthase alpha/beta chain, C terminal domain KHQ31_07095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ31_07100 PF00213 ATP synthase delta (OSCP) subunit KHQ31_07105 PF00430 ATP synthase B/B' CF(0) KHQ31_07110 PF00137 ATP synthase subunit C KHQ31_07115 PF00119 ATP synthase A chain KHQ31_07120 PF00860 Permease family KHQ31_07135 PF00464 Serine hydroxymethyltransferase KHQ31_07140 PF03481 Putative GTP-binding controlling metal-binding KHQ31_07140 PF01300 Telomere recombination KHQ31_07145 PF05175 Methyltransferase small domain KHQ31_07150 PF00472 RF-1 domain KHQ31_07150 PF03462 PCRF domain KHQ31_07155 PF00265 Thymidine kinase KHQ31_07160 PF07685 CobB/CobQ-like glutamine amidotransferase domain KHQ31_07165 PF08245 Mur ligase middle domain KHQ31_07165 PF08353 Domain of unknown function (DUF1727) KHQ31_07170 PF01238 Phosphomannose isomerase type I KHQ31_07175 PF06458 MucBP domain KHQ31_07180 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ31_07180 PF00294 pfkB family carbohydrate kinase KHQ31_07185 PF00294 pfkB family carbohydrate kinase KHQ31_07185 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ31_07190 PF01773 Na+ dependent nucleoside transporter N-terminus KHQ31_07190 PF07662 Na+ dependent nucleoside transporter C-terminus KHQ31_07195 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ31_07200 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ31_07220 PF00664 ABC transporter transmembrane region KHQ31_07220 PF00005 ABC transporter KHQ31_07225 PF00005 ABC transporter KHQ31_07225 PF00664 ABC transporter transmembrane region KHQ31_07230 PF01926 50S ribosome-binding GTPase KHQ31_07230 PF13167 GTP-binding GTPase N-terminal KHQ31_07230 PF16360 GTP-binding GTPase Middle Region KHQ31_07235 PF00300 Histidine phosphatase superfamily (branch 1) KHQ31_07250 PF01381 Helix-turn-helix KHQ31_07255 PF01381 Helix-turn-helix KHQ31_07265 PF13673 Acetyltransferase (GNAT) domain KHQ31_07275 PF02447 GntP family permease KHQ31_07280 PF03372 Endonuclease/Exonuclease/phosphatase family KHQ31_07290 PF00171 Aldehyde dehydrogenase family KHQ31_07290 PF00465 Iron-containing alcohol dehydrogenase KHQ31_07300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ31_07300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ31_07305 PF13520 Amino acid permease KHQ31_07310 PF00696 Amino acid kinase family KHQ31_07320 PF05649 Peptidase family M13 KHQ31_07320 PF01431 Peptidase family M13 KHQ31_07335 PF09364 XFP N-terminal domain KHQ31_07335 PF09363 XFP C-terminal domain KHQ31_07335 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase KHQ31_07340 PF00392 Bacterial regulatory proteins, gntR family KHQ31_07340 PF07702 UTRA domain KHQ31_07345 PF01966 HD domain KHQ31_07360 PF12848 ABC transporter KHQ31_07360 PF00005 ABC transporter KHQ31_07375 PF00005 ABC transporter KHQ31_07385 PF01047 MarR family KHQ31_07390 PF10263 SprT-like family KHQ31_07425 PF00854 POT family KHQ31_07435 PF00512 His Kinase A (phospho-acceptor) domain KHQ31_07435 PF00989 PAS fold KHQ31_07435 PF18698 Histidine kinase sensor domain KHQ31_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_07435 PF00672 HAMP domain KHQ31_07440 PF00072 Response regulator receiver domain KHQ31_07440 PF00486 Transcriptional regulatory protein, C terminal KHQ31_07450 PF01926 50S ribosome-binding GTPase KHQ31_07450 PF06071 Protein of unknown function (DUF933) KHQ31_07455 PF06107 Bacterial protein of unknown function (DUF951) KHQ31_07460 PF02195 ParB-like nuclease domain KHQ31_07460 PF17762 HTH domain found in ParB protein KHQ31_07465 PF13614 AAA domain KHQ31_07470 PF02527 rRNA small subunit methyltransferase G KHQ31_07475 PF14815 NUDIX domain KHQ31_07475 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ31_07485 PF01381 Helix-turn-helix KHQ31_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ31_07490 PF00512 His Kinase A (phospho-acceptor) domain KHQ31_07495 PF00072 Response regulator receiver domain KHQ31_07495 PF00486 Transcriptional regulatory protein, C terminal KHQ31_07500 PF00501 AMP-binding enzyme KHQ31_07500 PF13193 AMP-binding enzyme C-terminal domain KHQ31_07505 PF00378 Enoyl-CoA hydratase/isomerase KHQ31_07510 PF03061 Thioesterase superfamily KHQ31_07515 PF00857 Isochorismatase family KHQ31_07525 PF02229 Transcriptional Coactivator p15 (PC4) KHQ31_07530 PF17763 Glutaminase/Asparaginase C-terminal domain KHQ31_07530 PF00710 Asparaginase, N-terminal KHQ31_07535 PF13520 Amino acid permease KHQ31_07545 PF08240 Alcohol dehydrogenase GroES-like domain KHQ31_07545 PF00107 Zinc-binding dehydrogenase KHQ31_07550 PF01061 ABC-2 type transporter KHQ31_07555 PF00005 ABC transporter KHQ31_07555 PF01476 LysM domain KHQ31_07570 PF00230 Major intrinsic protein KHQ31_07595 PF03853 YjeF-related protein N-terminus KHQ31_07605 PF13419 Haloacid dehalogenase-like hydrolase KHQ31_07610 PF03633 Glycosyl hydrolase family 65, C-terminal domain KHQ31_07610 PF03632 Glycosyl hydrolase family 65 central catalytic domain KHQ31_07610 PF03636 Glycosyl hydrolase family 65, N-terminal domain KHQ31_07615 PF02378 Phosphotransferase system, EIIC KHQ31_07615 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KHQ31_07615 PF00367 phosphotransferase system, EIIB KHQ31_07620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KHQ31_07625 PF00392 Bacterial regulatory proteins, gntR family KHQ31_07625 PF07702 UTRA domain KHQ31_07635 PF02082 Transcriptional regulator KHQ31_07640 PF00690 Cation transporter/ATPase, N-terminus KHQ31_07640 PF00689 Cation transporting ATPase, C-terminus KHQ31_07645 PF13673 Acetyltransferase (GNAT) domain KHQ31_07650 PF07729 FCD domain KHQ31_07650 PF00392 Bacterial regulatory proteins, gntR family KHQ31_07660 PF01207 Dihydrouridine synthase (Dus) KHQ31_07685 PF07859 alpha/beta hydrolase fold KHQ31_07690 PF00324 Amino acid permease KHQ31_07695 PF01594 AI-2E family transporter KHQ31_07715 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ31_07720 PF00528 Binding-protein-dependent transport system inner membrane component KHQ31_07725 PF00005 ABC transporter KHQ31_07735 PF01022 Bacterial regulatory protein, arsR family KHQ31_07740 PF00403 Heavy-metal-associated domain KHQ31_07745 PF00440 Bacterial regulatory proteins, tetR family KHQ31_07745 PF08361 MAATS-type transcriptional repressor, C-terminal region KHQ31_07750 PF01938 TRAM domain KHQ31_07750 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ31_07755 PF00912 Transglycosylase KHQ31_07755 PF00905 Penicillin binding protein transpeptidase domain KHQ31_07760 PF00117 Glutamine amidotransferase class-I KHQ31_07760 PF00958 GMP synthase C terminal domain KHQ31_07760 PF02540 NAD synthase KHQ31_07775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ31_07775 PF00205 Thiamine pyrophosphate enzyme, central domain KHQ31_07775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ31_07785 PF00248 Aldo/keto reductase family KHQ31_07790 PF01638 HxlR-like helix-turn-helix KHQ31_07795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KHQ31_07795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KHQ31_07810 PF00075 RNase H KHQ31_07815 PF02386 Cation transport protein KHQ31_07820 PF02590 Predicted SPOUT methyltransferase KHQ31_07825 PF00324 Amino acid permease KHQ31_07830 PF02080 TrkA-C domain KHQ31_07830 PF02254 TrkA-N domain KHQ31_07835 PF10502 Signal peptidase, peptidase S26 KHQ31_07840 PF02096 60Kd inner membrane protein KHQ31_07845 PF00825 Ribonuclease P