WS08_0001 PF00468 Ribosomal protein L34 WS08_0003 PF00308 Bacterial dnaA protein WS08_0003 PF08299 Bacterial dnaA protein helix-turn-helix WS08_0004 PF00712 DNA polymerase III beta subunit, N-terminal domain WS08_0004 PF02767 DNA polymerase III beta subunit, central domain WS08_0004 PF02768 DNA polymerase III beta subunit, C-terminal domain WS08_0005 PF13275 S4 domain WS08_0006 PF02463 RecF/RecN/SMC N terminal domain WS08_0007 PF00204 DNA gyrase B WS08_0007 PF00986 DNA gyrase B subunit, carboxyl terminus WS08_0007 PF01751 Toprim domain WS08_0007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0008 PF00521 DNA gyrase/topoisomerase IV, subunit A WS08_0008 PF03989 DNA gyrase C-terminal domain, beta-propeller WS08_0009 PF00884 Sulfatase WS08_0010 PF00368 Hydroxymethylglutaryl-coenzyme A reductase WS08_0013 PF01380 SIS domain WS08_0013 PF01418 Helix-turn-helix domain, rpiR family WS08_0014 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WS08_0014 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WS08_0015 PF13673 Acetyltransferase (GNAT) domain WS08_0016 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_0017 PF13460 NADH(P)-binding WS08_0018 PF00579 tRNA synthetases class I (W and Y) WS08_0018 PF01479 S4 domain WS08_0019 PF00860 Permease family WS08_0020 PF00156 Phosphoribosyl transferase domain WS08_0021 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WS08_0021 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WS08_0022 PF00860 Permease family WS08_0024 PF02588 WS08_0024 WS08_0024 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_0025 PF12674 WS08_0025 WS08_0027 PF00438 S-adenosylmethionine synthetase, N-terminal domain WS08_0027 PF02772 S-adenosylmethionine synthetase, central domain WS08_0027 PF02773 S-adenosylmethionine synthetase, C-terminal domain WS08_0028 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_0030 PF03352 Methyladenine glycosylase WS08_0032 PF00133 tRNA synthetases class I (I, L, M and V) WS08_0032 PF08264 Anticodon-binding domain of tRNA WS08_0032 PF09334 tRNA synthetases class I (M) WS08_0032 PF13603 Leucyl-tRNA synthetase, Domain 2 WS08_0033 PF01943 WS08_0033 WS08_0033 PF14667 Polysaccharide biosynthesis C-terminal domain WS08_0036 PF13520 Amino acid permease WS08_0038 PF12705 PD-(D/E)XK nuclease superfamily WS08_0039 PF00580 UvrD/REP helicase N-terminal domain WS08_0039 PF13361 UvrD-like helicase C-terminal domain WS08_0040 PF00107 Zinc-binding dehydrogenase WS08_0040 PF08240 Alcohol dehydrogenase GroES-like domain WS08_0041 PF06486 Protein of unknown function (DUF1093) WS08_0042 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain WS08_0042 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain WS08_0043 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_0043 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_0044 PF00156 Phosphoribosyl transferase domain WS08_0044 PF09182 Bacterial purine repressor, N-terminal WS08_0045 PF00132 Bacterial transferase hexapeptide (six repeats) WS08_0045 PF00483 Nucleotidyl transferase WS08_0046 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS08_0046 PF14572 Phosphoribosyl synthetase-associated domain WS08_0047 PF06335 Protein of unknown function (DUF1054) WS08_0048 PF01250 Ribosomal protein S6 WS08_0049 PF00436 Single-strand binding protein family WS08_0050 PF01084 Ribosomal protein S18 WS08_0051 PF00072 Response regulator receiver domain WS08_0051 PF00486 Transcriptional regulatory protein, C terminal WS08_0052 PF00512 His Kinase A (phospho-acceptor) domain WS08_0052 PF00672 HAMP domain WS08_0052 PF00989 PAS fold WS08_0052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0053 PF07435 YycH protein WS08_0054 PF09648 YycH protein WS08_0055 PF12706 Beta-lactamase superfamily domain WS08_0056 PF13180 PDZ domain WS08_0056 PF13365 Trypsin-like peptidase domain WS08_0057 PF09148 Domain of unknown function (DUF1934) WS08_0058 PF01966 HD domain WS08_0059 PF08282 haloacid dehalogenase-like hydrolase WS08_0060 PF05066 HB1, ASXL, restriction endonuclease HTH domain WS08_0061 PF00117 Glutamine amidotransferase class-I WS08_0061 PF06418 CTP synthase N-terminus WS08_0062 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS08_0063 PF00270 DEAD/DEAH box helicase WS08_0063 PF00271 Helicase conserved C-terminal domain WS08_0064 PF01648 4'-phosphopantetheinyl transferase superfamily WS08_0065 PF00842 Alanine racemase, C-terminal domain WS08_0065 PF01168 Alanine racemase, N-terminal domain WS08_0066 PF02452 PemK-like protein WS08_0067 PF13245 Part of AAA domain WS08_0067 PF13538 UvrD-like helicase C-terminal domain WS08_0068 PF00579 tRNA synthetases class I (W and Y) WS08_0069 PF02541 Ppx/GppA phosphatase family WS08_0071 PF00746 WS08_0071 WS08_0071 PF05737 Collagen binding domain WS08_0072 PF01546 Peptidase family M20/M25/M40 WS08_0073 PF06207 WS08_0073 WS08_0074 PF00625 Guanylate kinase WS08_0077 PF00005 ABC transporter WS08_0078 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_0079 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0080 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0081 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS08_0082 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS08_0083 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0084 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0084 PF12911 WS08_0084 WS08_0085 PF00005 ABC transporter WS08_0085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS08_0086 PF00005 ABC transporter WS08_0086 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS08_0087 PF01368 DHH family WS08_0087 PF02272 DHHA1 domain WS08_0088 PF01281 Ribosomal protein L9, N-terminal domain WS08_0088 PF03948 Ribosomal protein L9, C-terminal domain WS08_0089 PF00772 DnaB-like helicase N terminal domain WS08_0089 PF03796 DnaB-like helicase C terminal domain WS08_0090 PF07690 Major Facilitator Superfamily WS08_0091 PF06081 WS08_0091 WS08_0092 PF04304 WS08_0092 WS08_0093 PF00288 GHMP kinases N terminal domain WS08_0093 PF08544 GHMP kinases C terminal WS08_0094 PF07179 WS08_0094 WS08_0095 PF13738 Pyridine nucleotide-disulphide oxidoreductase WS08_0096 PF00300 Histidine phosphatase superfamily (branch 1) WS08_0097 PF00005 ABC transporter WS08_0098 PF01061 WS08_0098 WS08_0100 PF09335 WS08_0100 WS08_0102 PF03729 WS08_0102 WS08_0103 PF01566 WS08_0103 WS08_0104 PF02875 Mur ligase family, glutamate ligase domain WS08_0104 PF08245 Mur ligase middle domain WS08_0105 PF06723 MreB/Mbl protein WS08_0106 PF11184 WS08_0106 WS08_0107 PF01098 WS08_0107 WS08_0108 PF03807 NADP oxidoreductase coenzyme F420-dependent WS08_0108 PF14748 Pyrroline-5-carboxylate reductase dimerisation WS08_0109 PF08282 haloacid dehalogenase-like hydrolase WS08_0110 PF00005 ABC transporter WS08_0110 PF02687 WS08_0110 WS08_0110 PF12704 MacB-like periplasmic core domain WS08_0111 PF01979 Amidohydrolase family WS08_0112 PF00392 Bacterial regulatory proteins, gntR family WS08_0112 PF07702 UTRA domain WS08_0113 PF00163 Ribosomal protein S4/S9 N-terminal domain WS08_0113 PF01479 S4 domain WS08_0114 PF06160 WS08_0114 WS08_0115 PF00860 Permease family WS08_0116 PF00709 Adenylosuccinate synthetase WS08_0117 PF00156 Phosphoribosyl transferase domain WS08_0119 PF09903 WS08_0119 WS08_0121 PF08282 haloacid dehalogenase-like hydrolase WS08_0122 PF01255 Putative undecaprenyl diphosphate synthase WS08_0123 PF01148 Cytidylyltransferase family WS08_0124 PF02163 Peptidase family M50 WS08_0124 PF13180 PDZ domain WS08_0125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_0125 PF03129 Anticodon binding domain WS08_0125 PF04073 Aminoacyl-tRNA editing domain WS08_0126 PF00929 Exonuclease WS08_0126 PF02811 PHP domain WS08_0126 PF07733 Bacterial DNA polymerase III alpha subunit WS08_0126 PF14480 WS08_0126 WS08_0126 PF14579 Helix-hairpin-helix motif WS08_0127 PF00588 SpoU rRNA Methylase family WS08_0129 PF00271 Helicase conserved C-terminal domain WS08_0129 PF04851 Type III restriction enzyme, res subunit WS08_0131 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WS08_0131 PF16321 WS08_0131 WS08_0132 PF00122 E1-E2 ATPase WS08_0132 PF00689 Cation transporting ATPase, C-terminus WS08_0132 PF00690 Cation transporter/ATPase, N-terminus WS08_0132 PF00702 haloacid dehalogenase-like hydrolase WS08_0134 PF00575 S1 RNA binding domain WS08_0134 PF09371 Tex-like protein N-terminal domain WS08_0134 PF12836 Helix-hairpin-helix motif WS08_0134 PF16921 WS08_0134 WS08_0136 PF00122 E1-E2 ATPase WS08_0136 PF00702 haloacid dehalogenase-like hydrolase WS08_0138 PF00013 KH domain WS08_0138 PF01966 HD domain WS08_0138 PF12072 WS08_0138 WS08_0141 PF00478 IMP dehydrogenase / GMP reductase domain WS08_0142 PF00145 C-5 cytosine-specific DNA methylase WS08_0143 PF09561 WS08_0143 WS08_0145 PF01381 Helix-turn-helix WS08_0146 PF01381 Helix-turn-helix WS08_0155 PF10546 WS08_0155 WS08_0160 PF00990 GGDEF domain WS08_0161 PF00258 Flavodoxin WS08_0162 PF00990 GGDEF domain WS08_0163 PF14015 WS08_0163 WS08_0165 PF03358 NADPH-dependent FMN reductase WS08_0166 PF00294 pfkB family carbohydrate kinase WS08_0167 PF05025 RbsD / FucU transport protein family WS08_0168 PF06800 WS08_0168 WS08_0169 PF00893 Small Multidrug Resistance protein WS08_0170 PF00924 Mechanosensitive ion channel WS08_0171 PF06800 WS08_0171 WS08_0172 PF00342 Phosphoglucose isomerase WS08_0173 PF01132 Elongation factor P (EF-P) OB domain WS08_0173 PF08207 Elongation factor P (EF-P) KOW-like domain WS08_0173 PF09285 Elongation factor P, C-terminal WS08_0174 PF03780 WS08_0174 WS08_0175 PF01029 NusB family WS08_0176 PF00707 Translation initiation factor IF-3, C-terminal domain WS08_0176 PF05198 Translation initiation factor IF-3, N-terminal domain WS08_0177 PF01632 Ribosomal protein L35 WS08_0178 PF00453 Ribosomal protein L20 WS08_0178 PF12949 HeH/LEM domain WS08_0179 PF00164 Ribosomal protein S12/S23 WS08_0180 PF00177 Ribosomal protein S7p/S5e WS08_0181 PF00009 Elongation factor Tu GTP binding domain WS08_0181 PF00679 Elongation factor G C-terminus WS08_0181 PF03144 Elongation factor Tu domain 2 WS08_0181 PF03764 Elongation factor G, domain IV WS08_0181 PF14492 Elongation Factor G, domain II WS08_0182 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS08_0182 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WS08_0183 PF00005 ABC transporter WS08_0183 PF08402 TOBE domain WS08_0184 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0185 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0186 PF13416 Bacterial extracellular solute-binding protein WS08_0187 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS08_0188 PF04020 WS08_0188 WS08_0189 PF02603 HPr Serine kinase N terminus WS08_0189 PF07475 HPr Serine kinase C-terminal domain WS08_0190 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WS08_0190 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WS08_0191 PF00483 Nucleotidyl transferase WS08_0192 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_0194 PF00381 PTS HPr component phosphorylation site WS08_0195 PF00391 PEP-utilising enzyme, mobile domain WS08_0195 PF02896 PEP-utilising enzyme, TIM barrel domain WS08_0195 PF05524 PEP-utilising enzyme, N-terminal WS08_0196 PF00121 Triosephosphate isomerase WS08_0197 PF00113 Enolase, C-terminal TIM barrel domain WS08_0197 PF03952 Enolase, N-terminal domain WS08_0198 PF03840 Preprotein translocase SecG subunit WS08_0199 PF00575 S1 RNA binding domain WS08_0199 PF00773 RNB domain WS08_0199 PF08206 Ribonuclease B OB domain WS08_0200 PF01668 SmpB protein WS08_0201 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_0201 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0202 PF00005 ABC transporter WS08_0203 PF03167 Uracil DNA glycosylase superfamily WS08_0204 PF01515 Phosphate acetyl/butaryl transferase WS08_0205 PF02367 Uncharacterised P-loop hydrolase UPF0079 WS08_0206 PF00583 Acetyltransferase (GNAT) family WS08_0207 PF00929 Exonuclease WS08_0208 PF01565 FAD binding domain WS08_0208 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WS08_0209 PF02457 DisA bacterial checkpoint controller nucleotide-binding WS08_0210 PF07949 YbbR-like protein WS08_0211 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS08_0211 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS08_0211 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS08_0211 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS08_0213 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS08_0213 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS08_0214 PF01979 Amidohydrolase family WS08_0215 PF00117 Glutamine amidotransferase class-I WS08_0215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_0216 PF02142 MGS-like domain WS08_0216 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_0216 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_0217 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WS08_0218 PF00156 Phosphoribosyl transferase domain WS08_0219 PF00534 Glycosyl transferases group 1 WS08_0219 PF13439 Glycosyltransferase Family 4 WS08_0220 PF00534 Glycosyl transferases group 1 WS08_0221 PF03706 WS08_0221 WS08_0222 PF00884 Sulfatase WS08_0223 PF01588 Putative tRNA binding domain WS08_0223 PF09334 tRNA synthetases class I (M) WS08_0224 PF00999 Sodium/hydrogen exchanger family WS08_0225 PF01026 TatD related DNase WS08_0226 PF13331 WS08_0226 WS08_0226 PF13662 Toprim domain WS08_0227 PF00398 Ribosomal RNA adenine dimethylase WS08_0228 PF00571 CBS domain WS08_0228 PF01595 WS08_0228 WS08_0229 PF06257 Protein of unknown function (DUF1021) WS08_0230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS08_0231 PF00303 Thymidylate synthase WS08_0232 PF03816 Cell envelope-related transcriptional attenuator domain WS08_0233 PF04024 WS08_0233 WS08_0234 PF02673 WS08_0234 WS08_0235 PF03631 WS08_0235 WS08_0236 PF00571 CBS domain WS08_0238 PF01195 Peptidyl-tRNA hydrolase WS08_0239 PF00270 DEAD/DEAH box helicase WS08_0239 PF00271 Helicase conserved C-terminal domain WS08_0239 PF02559 CarD-like/TRCF domain WS08_0239 PF03461 TRCF domain WS08_0240 PF01943 WS08_0240 WS08_0240 PF14667 Polysaccharide biosynthesis C-terminal domain WS08_0241 PF01479 S4 domain WS08_0242 PF04977 Septum formation initiator WS08_0243 PF01171 PP-loop family WS08_0244 PF00156 Phosphoribosyl transferase domain WS08_0245 PF00004 ATPase family associated with various cellular activities (AAA) WS08_0245 PF01434 Peptidase family M41 WS08_0245 PF06480 FtsH Extracellular WS08_0246 PF01430 Hsp33 protein WS08_0247 PF00152 tRNA synthetases class II (D, K and N) WS08_0247 PF01336 OB-fold nucleic acid binding domain WS08_0249 PF00296 Luciferase-like monooxygenase WS08_0250 PF03807 NADP oxidoreductase coenzyme F420-dependent WS08_0251 PF01381 Helix-turn-helix WS08_0252 PF01654 WS08_0252 WS08_0253 PF02322 WS08_0253 WS08_0254 PF00005 ABC transporter WS08_0254 PF00664 ABC transporter transmembrane region WS08_0255 PF00005 ABC transporter WS08_0256 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WS08_0257 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS08_0258 PF02222 ATP-grasp domain WS08_0259 PF13253 WS08_0259 WS08_0260 PF08877 MepB protein WS08_0261 PF11877 WS08_0261 WS08_0262 PF00313 'Cold-shock' DNA-binding domain WS08_0263 PF00293 NUDIX domain WS08_0265 PF01048 Phosphorylase superfamily WS08_0266 PF08866 Putative amino acid metabolism WS08_0267 PF01476 LysM domain WS08_0268 PF07972 NrdI Flavodoxin like WS08_0269 PF00462 Glutaredoxin WS08_0270 PF00317 Ribonucleotide reductase, all-alpha domain WS08_0270 PF02867 Ribonucleotide reductase, barrel domain WS08_0270 PF08343 Ribonucleotide reductase N-terminal WS08_0271 PF00268 Ribonucleotide reductase, small chain WS08_0272 PF04392 ABC transporter substrate binding protein WS08_0273 PF02653 WS08_0273 WS08_0274 PF00005 ABC transporter WS08_0275 PF02537 WS08_0275 WS08_0276 PF02537 WS08_0276 WS08_0278 PF04002 RadC-like JAB domain WS08_0279 PF06723 MreB/Mbl protein WS08_0280 PF04085 rod shape-determining protein MreC WS08_0281 PF00194 Eukaryotic-type carbonic anhydrase WS08_0282 PF04093 WS08_0282 WS08_0283 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0284 PF00005 ABC transporter WS08_0285 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_0286 PF01268 Formate--tetrahydrofolate ligase WS08_0289 PF01925 WS08_0289 WS08_0290 PF07843 WS08_0290 WS08_0291 PF00324 Amino acid permease WS08_0292 PF00224 Pyruvate kinase, barrel domain WS08_0292 PF02887 Pyruvate kinase, alpha/beta domain WS08_0293 PF06325 Ribosomal protein L11 methyltransferase (PrmA) WS08_0294 PF04452 RNA methyltransferase WS08_0295 PF02381 MraZ protein WS08_0296 PF01795 MraW methylase family WS08_0297 PF04977 Septum formation initiator WS08_0298 PF00905 Penicillin binding protein transpeptidase domain WS08_0298 PF03717 Penicillin-binding Protein dimerisation domain WS08_0298 PF03793 PASTA domain WS08_0299 PF00953 Glycosyl transferase family 4 WS08_0299 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WS08_0300 PF02875 Mur ligase family, glutamate ligase domain WS08_0300 PF08245 Mur ligase middle domain WS08_0301 PF03033 Glycosyltransferase family 28 N-terminal domain WS08_0301 PF04101 Glycosyltransferase family 28 C-terminal domain WS08_0302 PF08478 POTRA domain, FtsQ-type WS08_0303 PF02491 SHS2 domain inserted in FTSA WS08_0303 PF14450 Cell division protein FtsA WS08_0304 PF00091 Tubulin/FtsZ family, GTPase domain WS08_0304 PF12327 FtsZ family, C-terminal domain WS08_0305 PF04472 Protein of unknown function (DUF552) WS08_0306 PF02325 WS08_0306 WS08_0307 PF01479 S4 domain WS08_0308 PF05103 DivIVA protein WS08_0309 PF00133 tRNA synthetases class I (I, L, M and V) WS08_0309 PF08264 Anticodon-binding domain of tRNA WS08_0310 PF00300 Histidine phosphatase superfamily (branch 1) WS08_0311 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 WS08_0312 PF13538 UvrD-like helicase C-terminal domain WS08_0312 PF13604 AAA domain WS08_0312 PF14490 Helix-hairpin-helix containing domain WS08_0313 PF01709 Transcriptional regulator WS08_0314 PF00437 Type II/IV secretion system protein WS08_0315 PF00482 Type II secretion system (T2SS), protein F WS08_0316 PF07963 Prokaryotic N-terminal methylation motif WS08_0319 PF00271 Helicase conserved C-terminal domain WS08_0319 PF04851 Type III restriction enzyme, res subunit WS08_0320 PF00551 Formyl transferase WS08_0320 PF02911 Formyl transferase, C-terminal domain WS08_0321 PF01029 NusB family WS08_0321 PF01189 NOL1/NOP2/sun family WS08_0322 PF13672 Protein phosphatase 2C WS08_0323 PF00069 Protein kinase domain WS08_0323 PF03793 PASTA domain WS08_0324 PF03193 Protein of unknown function, DUF258 WS08_0324 PF16745 WS08_0324 WS08_0325 PF00834 Ribulose-phosphate 3 epimerase family WS08_0326 PF04263 Thiamin pyrophosphokinase, catalytic domain WS08_0327 PF00830 Ribosomal L28 family WS08_0328 PF03780 WS08_0328 WS08_0329 PF02734 DAK2 domain WS08_0329 PF13684 Dihydroxyacetone kinase family WS08_0330 PF00270 DEAD/DEAH box helicase WS08_0330 PF00271 Helicase conserved C-terminal domain WS08_0330 PF17191 WS08_0330 WS08_0331 PF02504 Fatty acid synthesis protein WS08_0332 PF00550 Phosphopantetheine attachment site WS08_0333 PF00035 Double-stranded RNA binding motif WS08_0333 PF14622 Ribonuclease-III-like WS08_0334 PF02463 RecF/RecN/SMC N terminal domain WS08_0334 PF06470 SMC proteins Flexible Hinge Domain WS08_0335 PF00448 SRP54-type protein, GTPase domain WS08_0335 PF02881 SRP54-type protein, helical bundle domain WS08_0336 PF04297 Putative helix-turn-helix protein, YlxM / p13 like WS08_0337 PF00448 SRP54-type protein, GTPase domain WS08_0337 PF02881 SRP54-type protein, helical bundle domain WS08_0337 PF02978 Signal peptide binding domain WS08_0338 PF00886 Ribosomal protein S16 WS08_0339 PF01782 RimM N-terminal domain WS08_0339 PF05239 PRC-barrel domain WS08_0340 PF01746 tRNA (Guanine-1)-methyltransferase WS08_0341 PF01245 Ribosomal protein L19 WS08_0342 PF02588 WS08_0342 WS08_0342 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_0343 PF01361 Tautomerase enzyme WS08_0344 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_0344 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_0345 PF00293 NUDIX domain WS08_0346 PF01712 Deoxynucleoside kinase WS08_0347 PF01741 Large-conductance mechanosensitive channel, MscL WS08_0348 PF08282 haloacid dehalogenase-like hydrolase WS08_0350 PF02517 CAAX protease self-immunity WS08_0352 PF06146 WS08_0352 WS08_0353 PF05389 Negative regulator of genetic competence (MecA) WS08_0354 PF01432 Peptidase family M3 WS08_0354 PF08439 Oligopeptidase F WS08_0355 PF06103 WS08_0355 WS08_0357 PF00557 Metallopeptidase family M24 WS08_0357 PF01321 Creatinase/Prolidase N-terminal domain WS08_0358 PF00356 Bacterial regulatory proteins, lacI family WS08_0358 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WS08_0359 PF05043 Mga helix-turn-helix domain WS08_0361 PF00746 WS08_0361 WS08_0361 PF06458 MucBP domain WS08_0362 PF02441 Flavoprotein WS08_0362 PF04127 DNA / pantothenate metabolism flavoprotein WS08_0363 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal WS08_0363 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal WS08_0364 PF05014 Nucleoside 2-deoxyribosyltransferase WS08_0365 PF01520 N-acetylmuramoyl-L-alanine amidase WS08_0365 PF08239 Bacterial SH3 domain WS08_0366 PF03129 Anticodon binding domain WS08_0366 PF13393 Histidyl-tRNA synthetase WS08_0367 PF00152 tRNA synthetases class II (D, K and N) WS08_0367 PF01336 OB-fold nucleic acid binding domain WS08_0367 PF02938 GAD domain WS08_0368 PF02588 WS08_0368 WS08_0368 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_0369 PF01165 Ribosomal protein S21 WS08_0370 PF09424 Yqey-like protein WS08_0371 PF02130 Uncharacterized protein family UPF0054 WS08_0372 PF01219 Prokaryotic diacylglycerol kinase WS08_0373 PF01926 50S ribosome-binding GTPase WS08_0373 PF07650 KH domain WS08_0374 PF02565 Recombination protein O C terminal WS08_0374 PF11967 Recombination protein O N terminal WS08_0375 PF02091 Glycyl-tRNA synthetase alpha subunit WS08_0376 PF02092 WS08_0376 WS08_0377 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) WS08_0378 PF01116 Fructose-bisphosphate aldolase class-II WS08_0379 PF00230 Major intrinsic protein WS08_0380 PF02652 WS08_0380 WS08_0382 PF03741 WS08_0382 WS08_0383 PF10282 Lactonase, 7-bladed beta-propeller WS08_0384 PF00588 SpoU rRNA Methylase family WS08_0385 PF01580 FtsK/SpoIIIE family WS08_0385 PF09397 Ftsk gamma domain WS08_0386 PF00005 ABC transporter WS08_0386 PF13732 WS08_0386 WS08_0387 PF12698 ABC-2 family transporter protein WS08_0388 PF03009 Glycerophosphoryl diester phosphodiesterase family WS08_0390 PF01541 GIY-YIG catalytic domain WS08_0390 PF02151 UvrB/uvrC motif WS08_0390 PF08459 UvrC Helix-hairpin-helix N-terminal WS08_0390 PF14520 Helix-hairpin-helix domain WS08_0391 PF01018 GTP1/OBG WS08_0391 PF01926 50S ribosome-binding GTPase WS08_0391 PF09269 Domain of unknown function (DUF1967) WS08_0392 PF01925 WS08_0392 WS08_0393 PF01205 Uncharacterized protein family UPF0029 WS08_0393 PF09186 Domain of unknown function (DUF1949) WS08_0394 PF07690 Major Facilitator Superfamily WS08_0395 PF00478 IMP dehydrogenase / GMP reductase domain WS08_0396 PF01330 RuvA N terminal domain WS08_0396 PF07499 RuvA, C-terminal domain WS08_0396 PF14520 Helix-hairpin-helix domain WS08_0397 PF05491 Holliday junction DNA helicase ruvB C-terminus WS08_0397 PF05496 Holliday junction DNA helicase ruvB N-terminus WS08_0398 PF02699 Preprotein translocase subunit WS08_0399 PF00817 impB/mucB/samB family WS08_0399 PF11798 IMS family HHH motif WS08_0399 PF11799 impB/mucB/samB family C-terminal domain WS08_0400 PF01368 DHH family WS08_0400 PF02272 DHHA1 domain WS08_0401 PF00270 DEAD/DEAH box helicase WS08_0401 PF00271 Helicase conserved C-terminal domain WS08_0402 PF00132 Bacterial transferase hexapeptide (six repeats) WS08_0402 PF12464 Maltose acetyltransferase WS08_0402 PF14602 Hexapeptide repeat of succinyl-transferase WS08_0403 PF01411 tRNA synthetases class II (A) WS08_0403 PF02272 DHHA1 domain WS08_0403 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS08_0404 PF06135 WS08_0404 WS08_0405 PF03652 Uncharacterised protein family (UPF0081) WS08_0406 PF06949 WS08_0406 WS08_0407 PF06949 WS08_0407 WS08_0408 PF10531 SLBB domain WS08_0408 PF12836 Helix-hairpin-helix motif WS08_0409 PF00753 Metallo-beta-lactamase superfamily WS08_0409 PF03772 WS08_0409 WS08_0410 PF06144 DNA polymerase III, delta subunit WS08_0411 PF00312 Ribosomal protein S15 WS08_0412 PF01649 Ribosomal protein S20 WS08_0414 PF00753 Metallo-beta-lactamase superfamily WS08_0414 PF07521 RNA-metabolising metallo-beta-lactamase WS08_0416 PF00009 Elongation factor Tu GTP binding domain WS08_0416 PF03143 Elongation factor Tu C-terminal domain WS08_0416 PF03144 Elongation factor Tu domain 2 WS08_0417 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS08_0417 PF05697 Bacterial trigger factor protein (TF) WS08_0417 PF05698 Bacterial trigger factor protein (TF) C-terminus WS08_0418 PF06689 ClpX C4-type zinc finger WS08_0418 PF07724 AAA domain (Cdc48 subfamily) WS08_0418 PF10431 C-terminal, D2-small domain, of ClpB protein WS08_0419 PF01926 50S ribosome-binding GTPase WS08_0420 PF05164 Cell division protein ZapA WS08_0421 PF02674 WS08_0421 WS08_0422 PF00488 MutS domain V WS08_0422 PF01713 Smr domain WS08_0424 PF00085 Thioredoxin WS08_0425 PF01177 Asp/Glu/Hydantoin racemase WS08_0426 PF01725 Ham1 family WS08_0427 PF12850 Calcineurin-like phosphoesterase superfamily domain WS08_0428 PF04607 Region found in RelA / SpoT proteins WS08_0429 PF01513 ATP-NAD kinase WS08_0430 PF00849 RNA pseudouridylate synthase WS08_0431 PF00571 CBS domain WS08_0431 PF01769 Divalent cation transporter WS08_0431 PF03448 MgtE intracellular N domain WS08_0432 PF02576 Uncharacterised BCR, YhbC family COG0779 WS08_0432 PF17384 WS08_0432 WS08_0433 PF08529 NusA N-terminal domain WS08_0433 PF13184 NusA-like KH domain WS08_0434 PF04296 Protein of unknown function (DUF448) WS08_0435 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family WS08_0436 PF00009 Elongation factor Tu GTP binding domain WS08_0436 PF04760 Translation initiation factor IF-2, N-terminal region WS08_0436 PF11987 Translation-initiation factor 2 WS08_0437 PF02033 Ribosome-binding factor A WS08_0438 PF13302 Acetyltransferase (GNAT) domain WS08_0439 PF01509 TruB family pseudouridylate synthase (N terminal domain) WS08_0439 PF16198 WS08_0439 WS08_0440 PF00805 Pentapeptide repeats (8 copies) WS08_0440 PF13599 Pentapeptide repeats (9 copies) WS08_0441 PF01687 Riboflavin kinase WS08_0441 PF06574 FAD synthetase WS08_0442 PF05670 WS08_0442 WS08_0442 PF05833 Fibronectin-binding protein A N-terminus (FbpA) WS08_0443 PF03932 CutC family WS08_0444 PF02645 Uncharacterised protein, DegV family COG1307 WS08_0445 PF02645 Uncharacterised protein, DegV family COG1307 WS08_0446 PF01565 FAD binding domain WS08_0446 PF09330 D-lactate dehydrogenase, membrane binding WS08_0447 PF06855 Protein of unknown function (DUF1250) WS08_0448 PF01926 50S ribosome-binding GTPase WS08_0449 PF01351 Ribonuclease HII WS08_0451 PF01468 GA module WS08_0452 PF00746 WS08_0452 WS08_0452 PF01468 GA module WS08_0453 PF02481 DNA recombination-mediator protein A WS08_0454 PF01131 DNA topoisomerase WS08_0454 PF01396 WS08_0454 WS08_0454 PF01751 Toprim domain WS08_0455 PF00589 Phage integrase family WS08_0455 PF02899 Phage integrase, N-terminal SAM-like domain WS08_0456 PF04909 Amidohydrolase WS08_0457 PF01263 Aldose 1-epimerase WS08_0458 PF07690 Major Facilitator Superfamily WS08_0459 PF02660 WS08_0459 WS08_0460 PF00204 DNA gyrase B WS08_0460 PF00986 DNA gyrase B subunit, carboxyl terminus WS08_0460 PF01751 Toprim domain WS08_0460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0461 PF00521 DNA gyrase/topoisomerase IV, subunit A WS08_0461 PF03989 DNA gyrase C-terminal domain, beta-propeller WS08_0462 PF05534 WS08_0462 WS08_0464 PF01145 SPFH domain / Band 7 family WS08_0465 PF01368 DHH family WS08_0465 PF02833 DHHA2 domain WS08_0466 PF00392 Bacterial regulatory proteins, gntR family WS08_0466 PF02080 TrkA-C domain WS08_0467 PF00005 ABC transporter WS08_0468 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0468 PF04069 Substrate binding domain of ABC-type glycine betaine transport system WS08_0470 PF13508 Acetyltransferase (GNAT) domain WS08_0472 PF01521 Iron-sulphur cluster biosynthesis WS08_0473 PF13419 Haloacid dehalogenase-like hydrolase WS08_0475 PF08000 Bacterial PH domain WS08_0476 PF00753 Metallo-beta-lactamase superfamily WS08_0476 PF07521 RNA-metabolising metallo-beta-lactamase WS08_0477 PF07288 Protein of unknown function (DUF1447) WS08_0479 PF01327 Polypeptide deformylase WS08_0480 PF05256 Uncharacterised protein family (UPF0223) WS08_0481 PF00459 Inositol monophosphatase family WS08_0482 PF00009 Elongation factor Tu GTP binding domain WS08_0482 PF00679 Elongation factor G C-terminus WS08_0482 PF03144 Elongation factor Tu domain 2 WS08_0482 PF14492 Elongation Factor G, domain II WS08_0483 PF01098 WS08_0483 WS08_0484 PF09902 WS08_0484 WS08_0485 PF03602 Conserved hypothetical protein 95 WS08_0486 PF01467 Cytidylyltransferase WS08_0487 PF05362 Lon protease (S16) C-terminal proteolytic domain WS08_0487 PF13180 PDZ domain WS08_0488 PF07690 Major Facilitator Superfamily WS08_0489 PF01807 CHC2 zinc finger WS08_0489 PF08275 DNA primase catalytic core, N-terminal domain WS08_0489 PF10410 DnaB-helicase binding domain of primase WS08_0489 PF13155 Toprim-like WS08_0490 PF00140 Sigma-70 factor, region 1 WS08_0490 PF03979 Sigma-70 factor, region 1 WS08_0490 PF04539 Sigma-70 region 3 WS08_0490 PF04542 Sigma-70 region 2 WS08_0490 PF04545 Sigma-70, region 4 WS08_0491 PF07690 Major Facilitator Superfamily WS08_0492 PF00072 Response regulator receiver domain WS08_0492 PF00486 Transcriptional regulatory protein, C terminal WS08_0493 PF00512 His Kinase A (phospho-acceptor) domain WS08_0493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0493 PF13188 PAS domain WS08_0494 PF00485 Phosphoribulokinase / Uridine kinase family WS08_0495 PF01588 Putative tRNA binding domain WS08_0495 PF14794 Domain of unknown function (DUF4479) WS08_0497 PF01225 Mur ligase family, catalytic domain WS08_0497 PF02875 Mur ligase family, glutamate ligase domain WS08_0497 PF08245 Mur ligase middle domain WS08_0498 PF01027 Inhibitor of apoptosis-promoting Bax1 WS08_0499 PF00476 DNA polymerase family A WS08_0499 PF01367 5'-3' exonuclease, C-terminal SAM fold WS08_0499 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WS08_0500 PF05532 CsbD-like WS08_0501 PF05987 WS08_0501 WS08_0502 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WS08_0502 PF06827 Zinc finger found in FPG and IleRS WS08_0502 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WS08_0503 PF01121 Dephospho-CoA kinase WS08_0504 PF07261 Replication initiation and membrane attachment WS08_0505 PF01695 IstB-like ATP binding protein WS08_0505 PF07319 Primosomal protein DnaI N-terminus WS08_0506 PF07907 WS08_0506 WS08_0507 PF07907 WS08_0507 WS08_0508 PF00072 Response regulator receiver domain WS08_0508 PF00486 Transcriptional regulatory protein, C terminal WS08_0509 PF00512 His Kinase A (phospho-acceptor) domain WS08_0509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0510 PF04245 WS08_0510 WS08_0511 PF13520 Amino acid permease WS08_0512 PF00072 Response regulator receiver domain WS08_0512 PF04397 LytTr DNA-binding domain WS08_0513 PF14501 GHKL domain WS08_0514 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_0515 PF01053 Cys/Met metabolism PLP-dependent enzyme WS08_0517 PF04657 WS08_0517 WS08_0518 PF06738 WS08_0518 WS08_0519 PF12821 WS08_0519 WS08_0520 PF01546 Peptidase family M20/M25/M40 WS08_0520 PF07687 Peptidase dimerisation domain WS08_0521 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family WS08_0522 PF00005 ABC transporter WS08_0523 PF13731 WS08_0523 WS08_0524 PF06030 WS08_0524 WS08_0524 PF11797 WS08_0524 WS08_0525 PF02368 Bacterial Ig-like domain (group 2) WS08_0526 PF05043 Mga helix-turn-helix domain WS08_0527 PF04221 RelB antitoxin WS08_0528 PF13673 Acetyltransferase (GNAT) domain WS08_0529 PF04221 RelB antitoxin WS08_0530 PF07751 WS08_0530 WS08_0531 PF01131 DNA topoisomerase WS08_0531 PF01751 Toprim domain WS08_0532 PF01070 FMN-dependent dehydrogenase WS08_0534 PF12850 Calcineurin-like phosphoesterase superfamily domain WS08_0535 PF00817 impB/mucB/samB family WS08_0535 PF11798 IMS family HHH motif WS08_0535 PF11799 impB/mucB/samB family C-terminal domain WS08_0537 PF02661 Fic/DOC family WS08_0538 PF03577 WS08_0538 WS08_0539 PF02517 CAAX protease self-immunity WS08_0542 PF04221 RelB antitoxin WS08_0544 PF04221 RelB antitoxin WS08_0545 PF05656 WS08_0545 WS08_0546 PF06458 MucBP domain WS08_0547 PF14449 WS08_0547 WS08_0549 PF00665 Integrase core domain WS08_0549 PF13936 Helix-turn-helix domain WS08_0555 PF00535 Glycosyl transferase family 2 WS08_0555 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_0556 PF03006 WS08_0556 WS08_0557 PF02632 BioY family WS08_0558 PF02237 Biotin protein ligase C terminal domain WS08_0558 PF03099 Biotin/lipoate A/B protein ligase family WS08_0559 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WS08_0560 PF01039 Carboxyl transferase domain WS08_0561 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain WS08_0561 PF02785 Biotin carboxylase C-terminal domain WS08_0561 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_0562 PF07977 FabA-like domain WS08_0563 PF00364 Biotin-requiring enzyme WS08_0564 PF00109 Beta-ketoacyl synthase, N-terminal domain WS08_0564 PF02801 Beta-ketoacyl synthase, C-terminal domain WS08_0565 PF13561 Enoyl-(Acyl carrier protein) reductase WS08_0566 PF00698 Acyl transferase domain WS08_0567 PF03060 Nitronate monooxygenase WS08_0568 PF00550 Phosphopantetheine attachment site WS08_0569 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WS08_0569 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WS08_0570 PF01047 MarR family WS08_0571 PF07977 FabA-like domain WS08_0572 PF01757 WS08_0572 WS08_0573 PF00005 ABC transporter WS08_0575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_0575 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_0576 PF00440 Bacterial regulatory proteins, tetR family WS08_0577 PF02698 DUF218 domain WS08_0578 PF03070 TENA/THI-4/PQQC family WS08_0579 PF02581 Thiamine monophosphate synthase/TENI WS08_0580 PF08543 Phosphomethylpyrimidine kinase WS08_0581 PF02110 Hydroxyethylthiazole kinase family WS08_0582 PF01979 Amidohydrolase family WS08_0582 PF13382 Adenine deaminase C-terminal domain WS08_0583 PF00746 WS08_0583 WS08_0583 PF05737 Collagen binding domain WS08_0584 PF03009 Glycerophosphoryl diester phosphodiesterase family WS08_0584 PF10110 WS08_0584 WS08_0586 PF05257 CHAP domain WS08_0586 PF16775 WS08_0586 WS08_0587 PF08282 haloacid dehalogenase-like hydrolase WS08_0588 PF00990 GGDEF domain WS08_0589 PF03747 ADP-ribosylglycohydrolase WS08_0590 PF10702 Protein of unknown function (DUF2507) WS08_0591 PF02390 Putative methyltransferase WS08_0592 PF05975 WS08_0592 WS08_0593 PF00005 ABC transporter WS08_0594 PF01230 HIT domain WS08_0596 PF00271 Helicase conserved C-terminal domain WS08_0596 PF02151 UvrB/uvrC motif WS08_0596 PF04851 Type III restriction enzyme, res subunit WS08_0596 PF12344 Ultra-violet resistance protein B WS08_0597 PF12917 HD containing hydrolase-like enzyme WS08_0598 PF07537 CamS sex pheromone cAM373 precursor WS08_0599 PF00533 BRCA1 C Terminus (BRCT) domain WS08_0599 PF01653 NAD-dependent DNA ligase adenylation domain WS08_0599 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WS08_0599 PF03120 NAD-dependent DNA ligase OB-fold domain WS08_0599 PF12826 Helix-hairpin-helix motif WS08_0599 PF14520 Helix-hairpin-helix domain WS08_0600 PF00580 UvrD/REP helicase N-terminal domain WS08_0600 PF13361 UvrD-like helicase C-terminal domain WS08_0601 PF03083 Sugar efflux transporter for intercellular exchange WS08_0602 PF05154 WS08_0602 WS08_0603 PF01625 Peptide methionine sulfoxide reductase WS08_0604 PF13365 Trypsin-like peptidase domain WS08_0605 PF01170 Putative RNA methylase family UPF0020 WS08_0605 PF02926 THUMP domain WS08_0606 PF05103 DivIVA protein WS08_0607 PF06908 Protein of unknown function (DUF1273) WS08_0608 PF03838 Recombination protein U WS08_0609 PF00905 Penicillin binding protein transpeptidase domain WS08_0609 PF00912 Transglycosylase WS08_0610 PF01473 Putative cell wall binding repeat WS08_0610 PF13529 Peptidase_C39 like family WS08_0611 PF07261 Replication initiation and membrane attachment WS08_0613 PF02517 CAAX protease self-immunity WS08_0614 PF00152 tRNA synthetases class II (D, K and N) WS08_0614 PF01336 OB-fold nucleic acid binding domain WS08_0616 PF00929 Exonuclease WS08_0616 PF13307 Helicase C-terminal domain WS08_0617 PF04226 WS08_0617 WS08_0623 PF01844 HNH endonuclease WS08_0626 PF13443 Cro/C1-type HTH DNA-binding domain WS08_0629 PF00288 GHMP kinases N terminal domain WS08_0629 PF08544 GHMP kinases C terminal WS08_0630 PF00288 GHMP kinases N terminal domain WS08_0631 PF00288 GHMP kinases N terminal domain WS08_0631 PF08544 GHMP kinases C terminal WS08_0632 PF01070 FMN-dependent dehydrogenase WS08_0633 PF00085 Thioredoxin WS08_0634 PF02096 60Kd inner membrane protein WS08_0635 PF00583 Acetyltransferase (GNAT) family WS08_0636 PF00334 Nucleoside diphosphate kinase WS08_0638 PF13520 Amino acid permease WS08_0639 PF07099 WS08_0639 WS08_0640 PF03601 WS08_0640 WS08_0642 PF07238 PilZ domain WS08_0642 PF13641 Glycosyltransferase like family 2 WS08_0643 PF00535 Glycosyl transferase family 2 WS08_0643 PF04138 WS08_0643 WS08_0644 PF00108 Thiolase, N-terminal domain WS08_0644 PF02803 Thiolase, C-terminal domain WS08_0645 PF04261 Dyp-type peroxidase family WS08_0646 PF01475 Ferric uptake regulator family WS08_0647 PF00144 Beta-lactamase WS08_0648 PF03649 WS08_0648 WS08_0649 PF00005 ABC transporter WS08_0650 PF12697 Alpha/beta hydrolase family WS08_0651 PF04198 Putative sugar-binding domain WS08_0652 PF02687 WS08_0652 WS08_0653 PF00005 ABC transporter WS08_0654 PF07859 alpha/beta hydrolase fold WS08_0655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_0655 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_0656 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WS08_0656 PF00364 Biotin-requiring enzyme WS08_0656 PF02817 e3 binding domain WS08_0657 PF02779 Transketolase, pyrimidine binding domain WS08_0657 PF02780 Transketolase, C-terminal domain WS08_0658 PF00676 Dehydrogenase E1 component WS08_0659 PF03099 Biotin/lipoate A/B protein ligase family WS08_0659 PF10437 Bacterial lipoate protein ligase C-terminus WS08_0660 PF00128 Alpha amylase, catalytic domain WS08_0660 PF16657 WS08_0660 WS08_0661 PF07690 Major Facilitator Superfamily WS08_0662 PF07681 WS08_0662 WS08_0663 PF13302 Acetyltransferase (GNAT) domain WS08_0664 PF01476 LysM domain WS08_0667 PF03819 MazG nucleotide pyrophosphohydrolase domain WS08_0668 PF03641 Possible lysine decarboxylase WS08_0673 PF00356 Bacterial regulatory proteins, lacI family WS08_0673 PF13377 Periplasmic binding protein-like domain WS08_0674 PF07690 Major Facilitator Superfamily WS08_0675 PF01268 Formate--tetrahydrofolate ligase WS08_0676 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WS08_0676 PF02843 Phosphoribosylglycinamide synthetase, C domain WS08_0676 PF02844 Phosphoribosylglycinamide synthetase, N domain WS08_0677 PF01808 AICARFT/IMPCHase bienzyme WS08_0677 PF02142 MGS-like domain WS08_0678 PF00551 Formyl transferase WS08_0679 PF00586 AIR synthase related protein, N-terminal domain WS08_0679 PF02769 AIR synthase related protein, C-terminal domain WS08_0680 PF00156 Phosphoribosyl transferase domain WS08_0680 PF13537 Glutamine amidotransferase domain WS08_0681 PF00586 AIR synthase related protein, N-terminal domain WS08_0681 PF02769 AIR synthase related protein, C-terminal domain WS08_0682 PF13507 CobB/CobQ-like glutamine amidotransferase domain WS08_0683 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WS08_0684 PF01259 SAICAR synthetase WS08_0685 PF02222 ATP-grasp domain WS08_0685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS08_0686 PF00731 AIR carboxylase WS08_0687 PF04914 DltD C-terminal region WS08_0688 PF00550 Phosphopantetheine attachment site WS08_0689 PF03062 WS08_0689 WS08_0690 PF00501 AMP-binding enzyme WS08_0690 PF13193 AMP-binding enzyme C-terminal domain WS08_0691 PF12459 WS08_0691 WS08_0692 PF00583 Acetyltransferase (GNAT) family WS08_0693 PF00009 Elongation factor Tu GTP binding domain WS08_0693 PF00679 Elongation factor G C-terminus WS08_0693 PF03144 Elongation factor Tu domain 2 WS08_0693 PF06421 GTP-binding protein LepA C-terminus WS08_0694 PF05656 WS08_0694 WS08_0696 PF00107 Zinc-binding dehydrogenase WS08_0696 PF08240 Alcohol dehydrogenase GroES-like domain WS08_0697 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WS08_0698 PF04991 WS08_0698 WS08_0699 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_0701 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_0701 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_0702 PF00440 Bacterial regulatory proteins, tetR family WS08_0703 PF00253 Ribosomal protein S14p/S29e WS08_0704 PF00471 Ribosomal protein L33 WS08_0707 PF00871 Acetokinase family WS08_0708 PF01546 Peptidase family M20/M25/M40 WS08_0708 PF07687 Peptidase dimerisation domain WS08_0709 PF01784 NIF3 (NGG1p interacting factor 3) WS08_0710 PF04816 Family of unknown function (DUF633) WS08_0711 PF13174 Tetratricopeptide repeat WS08_0711 PF13432 Tetratricopeptide repeat WS08_0713 PF00293 NUDIX domain WS08_0715 PF05656 WS08_0715 WS08_0716 PF00056 lactate/malate dehydrogenase, NAD binding domain WS08_0716 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WS08_0717 PF07690 Major Facilitator Superfamily WS08_0718 PF07155 ECF-type riboflavin transporter, S component WS08_0719 PF08543 Phosphomethylpyrimidine kinase WS08_0720 PF00216 Bacterial DNA-binding protein WS08_0721 PF01926 50S ribosome-binding GTPase WS08_0721 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WS08_0722 PF00575 S1 RNA binding domain WS08_0723 PF02224 Cytidylate kinase WS08_0725 PF00270 DEAD/DEAH box helicase WS08_0725 PF00271 Helicase conserved C-terminal domain WS08_0727 PF12822 Protein of unknown function (DUF3816) WS08_0728 PF00849 RNA pseudouridylate synthase WS08_0728 PF01479 S4 domain WS08_0729 PF04079 Putative transcriptional regulators (Ypuh-like) WS08_0730 PF02616 ScpA/B protein WS08_0732 PF00589 Phage integrase family WS08_0732 PF02899 Phage integrase, N-terminal SAM-like domain WS08_0733 PF13509 S1 domain WS08_0735 PF00230 Major intrinsic protein WS08_0736 PF00121 Triosephosphate isomerase WS08_0737 PF01266 FAD dependent oxidoreductase WS08_0737 PF16901 WS08_0737 WS08_0738 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_0738 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_0739 PF05651 WS08_0739 WS08_0739 PF13556 PucR C-terminal helix-turn-helix domain WS08_0740 PF00999 Sodium/hydrogen exchanger family WS08_0741 PF04221 RelB antitoxin WS08_0742 PF02824 TGS domain WS08_0742 PF04607 Region found in RelA / SpoT proteins WS08_0742 PF13291 ACT domain WS08_0742 PF13328 HD domain WS08_0743 PF01336 OB-fold nucleic acid binding domain WS08_0743 PF02811 PHP domain WS08_0743 PF07733 Bacterial DNA polymerase III alpha subunit WS08_0743 PF14579 Helix-hairpin-helix motif WS08_0744 PF11151 WS08_0744 WS08_0745 PF00186 Dihydrofolate reductase WS08_0746 PF00005 ABC transporter WS08_0746 PF12848 ABC transporter WS08_0746 PF16326 WS08_0746 WS08_0747 PF01743 Poly A polymerase head domain WS08_0747 PF12627 Probable RNA and SrmB- binding site of polymerase A WS08_0747 PF13735 tRNA nucleotidyltransferase domain 2 putative WS08_0749 PF09848 Uncharacterized conserved protein (DUF2075) WS08_0750 PF01380 SIS domain WS08_0750 PF13522 Glutamine amidotransferase domain WS08_0753 PF03816 Cell envelope-related transcriptional attenuator domain WS08_0754 PF01765 Ribosome recycling factor WS08_0755 PF00696 Amino acid kinase family WS08_0756 PF00889 Elongation factor TS WS08_0758 PF00318 Ribosomal protein S2 WS08_0759 PF01541 GIY-YIG catalytic domain WS08_0760 PF05175 Methyltransferase small domain WS08_0761 PF01553 Acyltransferase WS08_0762 PF03672 WS08_0762 WS08_0763 PF05979 Bacterial protein of unknown function (DUF896) WS08_0764 PF00156 Phosphoribosyl transferase domain WS08_0765 PF01368 DHH family WS08_0765 PF02272 DHHA1 domain WS08_0765 PF10141 WS08_0765 WS08_0766 PF12706 Beta-lactamase superfamily domain WS08_0769 PF00226 DnaJ domain WS08_0769 PF01556 DnaJ C terminal domain WS08_0770 PF00012 Hsp70 protein WS08_0771 PF01025 GrpE WS08_0772 PF01628 HrcA protein C terminal domain WS08_0772 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding WS08_0773 PF01183 Glycosyl hydrolases family 25 WS08_0773 PF13457 SH3-like domain WS08_0774 PF14393 WS08_0774 WS08_0775 PF00535 Glycosyl transferase family 2 WS08_0777 PF02397 WS08_0777 WS08_0778 PF00557 Metallopeptidase family M24 WS08_0779 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_0780 PF01061 WS08_0780 WS08_0781 PF00005 ABC transporter WS08_0783 PF01467 Cytidylyltransferase WS08_0784 PF02073 Thermophilic metalloprotease (M29) WS08_0785 PF00313 'Cold-shock' DNA-binding domain WS08_0786 PF16069 WS08_0786 WS08_0787 PF07690 Major Facilitator Superfamily WS08_0789 PF00485 Phosphoribulokinase / Uridine kinase family WS08_0790 PF13245 Part of AAA domain WS08_0790 PF13538 UvrD-like helicase C-terminal domain WS08_0791 PF00154 recA bacterial DNA recombination protein WS08_0792 PF02464 Competence-damaged protein WS08_0793 PF01066 CDP-alcohol phosphatidyltransferase WS08_0794 PF13413 Helix-turn-helix domain WS08_0794 PF13464 WS08_0794 WS08_0795 PF00675 Insulinase (Peptidase family M16) WS08_0795 PF05193 Peptidase M16 inactive domain WS08_0796 PF05193 Peptidase M16 inactive domain WS08_0797 PF13091 PLD-like domain WS08_0797 PF13396 WS08_0797 WS08_0801 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_0801 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_0802 PF01966 HD domain WS08_0803 PF13476 AAA domain WS08_0804 PF00149 Calcineurin-like phosphoesterase WS08_0805 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_0806 PF06133 Protein of unknown function (DUF964) WS08_0807 PF00905 Penicillin binding protein transpeptidase domain WS08_0807 PF00912 Transglycosylase WS08_0808 PF01316 Arginine repressor, DNA binding domain WS08_0808 PF02863 Arginine repressor, C-terminal domain WS08_0809 PF00750 tRNA synthetases class I (R) WS08_0809 PF03485 Arginyl tRNA synthetase N terminal domain WS08_0809 PF05746 DALR anticodon binding domain WS08_0811 PF02875 Mur ligase family, glutamate ligase domain WS08_0811 PF08245 Mur ligase middle domain WS08_0812 PF01725 Ham1 family WS08_0814 PF00781 Diacylglycerol kinase catalytic domain WS08_0815 PF02637 GatB domain WS08_0815 PF02934 GatB/GatE catalytic domain WS08_0816 PF01425 Amidase WS08_0817 PF02686 Glu-tRNAGln amidotransferase C subunit WS08_0818 PF01189 NOL1/NOP2/sun family WS08_0818 PF13636 pre-rRNA processing and ribosome biogenesis WS08_0818 PF17125 WS08_0818 WS08_0818 PF17126 WS08_0818 WS08_0819 PF13349 WS08_0819 WS08_0820 PF08006 WS08_0820 WS08_0821 PF03551 Transcriptional regulator PadR-like family WS08_0822 PF00248 Aldo/keto reductase family WS08_0823 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS08_0823 PF14572 Phosphoribosyl synthetase-associated domain WS08_0824 PF01180 Dihydroorotate dehydrogenase WS08_0825 PF09515 Thiamine transporter protein (Thia_YuaJ) WS08_0826 PF01487 Type I 3-dehydroquinase WS08_0827 PF01202 Shikimate kinase WS08_0828 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS08_0829 PF01264 Chorismate synthase WS08_0830 PF01761 3-dehydroquinate synthase WS08_0831 PF00793 DAHP synthetase I family WS08_0832 PF08501 Shikimate dehydrogenase substrate binding domain WS08_0834 PF00990 GGDEF domain WS08_0835 PF11611 Domain of unknown function (DUF4352) WS08_0836 PF12822 Protein of unknown function (DUF3816) WS08_0837 PF00155 Aminotransferase class I and II WS08_0838 PF01427 D-ala-D-ala dipeptidase WS08_0839 PF00155 Aminotransferase class I and II WS08_0841 PF00356 Bacterial regulatory proteins, lacI family WS08_0841 PF13377 Periplasmic binding protein-like domain WS08_0842 PF00288 GHMP kinases N terminal domain WS08_0843 PF12822 Protein of unknown function (DUF3816) WS08_0846 PF01325 Iron dependent repressor, N-terminal DNA binding domain WS08_0846 PF02742 Iron dependent repressor, metal binding and dimerisation domain WS08_0846 PF04023 FeoA domain WS08_0848 PF04203 Sortase family WS08_0849 PF02629 CoA binding domain WS08_0849 PF06971 Putative DNA-binding protein N-terminus WS08_0850 PF00270 DEAD/DEAH box helicase WS08_0850 PF00271 Helicase conserved C-terminal domain WS08_0851 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS08_0852 PF01938 TRAM domain WS08_0852 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_0853 PF01435 Peptidase family M48 WS08_0854 PF04011 LemA family WS08_0855 PF01569 PAP2 superfamily WS08_0858 PF13673 Acetyltransferase (GNAT) domain WS08_0859 PF06445 GyrI-like small molecule binding domain WS08_0860 PF13673 Acetyltransferase (GNAT) domain WS08_0861 PF01381 Helix-turn-helix WS08_0862 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS08_0862 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS08_0862 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS08_0862 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS08_0863 PF03275 UDP-galactopyranose mutase WS08_0863 PF13450 NAD(P)-binding Rossmann-like domain WS08_0864 PF00206 Lyase WS08_0864 PF10397 Adenylosuccinate lyase C-terminus WS08_0865 PF00639 PPIC-type PPIASE domain WS08_0866 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_0866 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_0867 PF00117 Glutamine amidotransferase class-I WS08_0867 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_0868 PF00156 Phosphoribosyl transferase domain WS08_0869 PF00849 RNA pseudouridylate synthase WS08_0869 PF01479 S4 domain WS08_0870 PF17255 WS08_0870 WS08_0871 PF03553 WS08_0871 WS08_0872 PF00324 Amino acid permease WS08_0873 PF01197 Ribosomal protein L31 WS08_0874 PF00009 Elongation factor Tu GTP binding domain WS08_0874 PF00679 Elongation factor G C-terminus WS08_0874 PF03144 Elongation factor Tu domain 2 WS08_0874 PF06421 GTP-binding protein LepA C-terminus WS08_0875 PF00162 Phosphoglycerate kinase WS08_0876 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS08_0876 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS08_0879 PF01381 Helix-turn-helix WS08_0880 PF00149 Calcineurin-like phosphoesterase WS08_0880 PF02872 5'-nucleotidase, C-terminal domain WS08_0881 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0882 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0883 PF00005 ABC transporter WS08_0884 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein WS08_0885 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein WS08_0886 PF03729 WS08_0886 WS08_0887 PF13930 DNA/RNA non-specific endonuclease WS08_0888 PF06115 WS08_0888 WS08_0889 PF03613 WS08_0889 WS08_0890 PF03609 WS08_0890 WS08_0891 PF03610 PTS system fructose IIA component WS08_0891 PF03830 PTS system sorbose subfamily IIB component WS08_0892 PF09586 WS08_0892 WS08_0895 PF00575 S1 RNA binding domain WS08_0896 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS08_0897 PF09335 WS08_0897 WS08_0898 PF01192 RNA polymerase Rpb6 WS08_0899 PF00625 Guanylate kinase WS08_0900 PF02463 RecF/RecN/SMC N terminal domain WS08_0901 PF01316 Arginine repressor, DNA binding domain WS08_0901 PF02863 Arginine repressor, C-terminal domain WS08_0902 PF01728 FtsJ-like methyltransferase WS08_0903 PF00348 Polyprenyl synthetase WS08_0904 PF02609 Exonuclease VII small subunit WS08_0905 PF02601 WS08_0905 WS08_0905 PF13742 WS08_0905 WS08_0906 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WS08_0906 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WS08_0907 PF07155 ECF-type riboflavin transporter, S component WS08_0909 PF02388 FemAB family WS08_0910 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase WS08_0911 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_0911 PF02824 TGS domain WS08_0911 PF03129 Anticodon binding domain WS08_0911 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS08_0912 PF00258 Flavodoxin WS08_0913 PF01119 DNA mismatch repair protein, C-terminal domain WS08_0913 PF08676 MutL C terminal dimerisation domain WS08_0913 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_0914 PF00488 MutS domain V WS08_0914 PF01624 MutS domain I WS08_0914 PF05188 MutS domain II WS08_0914 PF05190 MutS family domain IV WS08_0914 PF05192 MutS domain III WS08_0915 PF02620 WS08_0915 WS08_0916 PF05636 HIGH Nucleotidyl Transferase WS08_0917 PF13649 Methyltransferase domain WS08_0918 PF02410 Oligomerisation domain WS08_0919 PF01966 HD domain WS08_0920 PF01467 Cytidylyltransferase WS08_0921 PF01985 CRS1 / YhbY (CRM) domain WS08_0922 PF01926 50S ribosome-binding GTPase WS08_0923 PF13242 HAD-hyrolase-like WS08_0924 PF01820 D-ala D-ala ligase N-terminus WS08_0924 PF07478 D-ala D-ala ligase C-terminus WS08_0925 PF10978 WS08_0925 WS08_0926 PF13520 Amino acid permease WS08_0927 PF00118 TCP-1/cpn60 chaperonin family WS08_0928 PF00166 Chaperonin 10 Kd subunit WS08_0929 PF00005 ABC transporter WS08_0929 PF12848 ABC transporter WS08_0929 PF16326 WS08_0929 WS08_0930 PF02875 Mur ligase family, glutamate ligase domain WS08_0930 PF08245 Mur ligase middle domain WS08_0931 PF00133 tRNA synthetases class I (I, L, M and V) WS08_0931 PF08264 Anticodon-binding domain of tRNA WS08_0931 PF10458 Valyl tRNA synthetase tRNA binding arm WS08_0932 PF01810 WS08_0932 WS08_0933 PF00582 Universal stress protein family WS08_0936 PF00004 ATPase family associated with various cellular activities (AAA) WS08_0936 PF12002 MgsA AAA+ ATPase C terminal WS08_0936 PF16193 WS08_0936 WS08_0937 PF07997 Protein of unknown function (DUF1694) WS08_0939 PF00009 Elongation factor Tu GTP binding domain WS08_0939 PF03144 Elongation factor Tu domain 2 WS08_0939 PF16658 WS08_0939 WS08_0941 PF04167 Protein of unknown function (DUF402) WS08_0942 PF02631 RecX family WS08_0943 PF01895 PhoU domain WS08_0944 PF00005 ABC transporter WS08_0945 PF00005 ABC transporter WS08_0946 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0947 PF00528 Binding-protein-dependent transport system inner membrane component WS08_0948 PF12849 PBP superfamily domain WS08_0952 PF01906 Putative heavy-metal-binding WS08_0953 PF13242 HAD-hyrolase-like WS08_0953 PF13344 Haloacid dehalogenase-like hydrolase WS08_0954 PF06265 Protein of unknown function (DUF1027) WS08_0955 PF00149 Calcineurin-like phosphoesterase WS08_0957 PF00557 Metallopeptidase family M24 WS08_0957 PF01321 Creatinase/Prolidase N-terminal domain WS08_0958 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain WS08_0958 PF13378 Enolase C-terminal domain-like WS08_0959 PF00561 alpha/beta hydrolase fold WS08_0960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_0960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_0960 PF16582 WS08_0960 WS08_0961 PF00425 chorismate binding enzyme WS08_0962 PF09848 Uncharacterized conserved protein (DUF2075) WS08_0963 PF00884 Sulfatase WS08_0964 PF13520 Amino acid permease WS08_0965 PF03390 WS08_0965 WS08_0966 PF07690 Major Facilitator Superfamily WS08_0967 PF04138 WS08_0967 WS08_0968 PF00107 Zinc-binding dehydrogenase WS08_0968 PF08240 Alcohol dehydrogenase GroES-like domain WS08_0969 PF01048 Phosphorylase superfamily WS08_0970 PF01676 Metalloenzyme superfamily WS08_0971 PF01791 DeoC/LacD family aldolase WS08_0972 PF02378 Phosphotransferase system, EIIC WS08_0973 PF05913 Bacterial protein of unknown function (DUF871) WS08_0974 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WS08_0975 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit WS08_0976 PF00005 ABC transporter WS08_0977 PF01032 FecCD transport family WS08_0978 PF01497 Periplasmic binding protein WS08_0979 PF05031 Iron Transport-associated domain WS08_0980 PF12799 Leucine Rich repeats (2 copies) WS08_0982 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_0982 PF07943 Penicillin-binding protein 5, C-terminal domain WS08_0983 PF01016 Ribosomal L27 protein WS08_0984 PF00829 Ribosomal prokaryotic L21 protein WS08_0985 PF07690 Major Facilitator Superfamily WS08_0986 PF13376 WS08_0986 WS08_0990 PF00120 Glutamine synthetase, catalytic domain WS08_0990 PF03951 Glutamine synthetase, beta-Grasp domain WS08_0991 PF13411 MerR HTH family regulatory protein WS08_0992 PF01715 IPP transferase WS08_0993 PF11240 WS08_0993 WS08_0994 PF00581 Rhodanese-like domain WS08_0995 PF00480 ROK family WS08_0996 PF06014 Bacterial protein of unknown function (DUF910) WS08_0997 PF01694 Rhomboid family WS08_0998 PF01812 5-formyltetrahydrofolate cyclo-ligase family WS08_0999 PF00905 Penicillin binding protein transpeptidase domain WS08_0999 PF03717 Penicillin-binding Protein dimerisation domain WS08_1000 PF09586 WS08_1000 WS08_1001 PF01272 Transcription elongation factor, GreA/GreB, C-term WS08_1001 PF03449 Transcription elongation factor, N-terminal WS08_1002 PF02618 YceG-like family WS08_1003 PF01588 Putative tRNA binding domain WS08_1003 PF03147 Ferredoxin-fold anticodon binding domain WS08_1003 PF03483 B3/4 domain WS08_1003 PF03484 tRNA synthetase B5 domain WS08_1004 PF01409 tRNA synthetases class II core domain (F) WS08_1004 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WS08_1005 PF01638 HxlR-like helix-turn-helix WS08_1006 PF02388 FemAB family WS08_1007 PF00588 SpoU rRNA Methylase family WS08_1007 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS08_1008 PF01966 HD domain WS08_1010 PF00472 RF-1 domain WS08_1010 PF03462 PCRF domain WS08_1011 PF01043 SecA preprotein cross-linking domain WS08_1011 PF07516 SecA Wing and Scaffold domain WS08_1011 PF07517 SecA DEAD-like domain WS08_1012 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS08_1013 PF13481 AAA domain WS08_1013 PF13541 Subunit ChlI of Mg-chelatase WS08_1014 PF00692 dUTPase WS08_1015 PF14542 GCN5-related N-acetyl-transferase WS08_1016 PF00877 NlpC/P60 family WS08_1017 PF01476 LysM domain WS08_1017 PF05257 CHAP domain WS08_1018 PF00004 ATPase family associated with various cellular activities (AAA) WS08_1018 PF02151 UvrB/uvrC motif WS08_1018 PF07724 AAA domain (Cdc48 subfamily) WS08_1018 PF10431 C-terminal, D2-small domain, of ClpB protein WS08_1019 PF00107 Zinc-binding dehydrogenase WS08_1019 PF08240 Alcohol dehydrogenase GroES-like domain WS08_1020 PF00205 Thiamine pyrophosphate enzyme, central domain WS08_1020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_1020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_1021 PF03306 Alpha-acetolactate decarboxylase WS08_1022 PF05014 Nucleoside 2-deoxyribosyltransferase WS08_1023 PF13508 Acetyltransferase (GNAT) domain WS08_1024 PF01047 MarR family WS08_1025 PF00582 Universal stress protein family WS08_1026 PF01783 Ribosomal L32p protein family WS08_1027 PF13303 WS08_1027 WS08_1028 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS08_1028 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS08_1029 PF00574 Clp protease WS08_1031 PF02650 WhiA C-terminal HTH domain WS08_1031 PF10298 WhiA N-terminal LAGLIDADG-like domain WS08_1031 PF14527 WhiA LAGLIDADG-like domain WS08_1032 PF01933 Uncharacterised protein family UPF0052 WS08_1033 PF03668 WS08_1033 WS08_1034 PF00005 ABC transporter WS08_1036 PF02447 WS08_1036 WS08_1038 PF00931 NB-ARC domain WS08_1039 PF00380 Ribosomal protein S9/S16 WS08_1040 PF00572 Ribosomal protein L13 WS08_1041 PF01416 tRNA pseudouridine synthase WS08_1042 PF02361 Cobalt transport protein WS08_1043 PF00005 ABC transporter WS08_1044 PF00005 ABC transporter WS08_1045 PF01757 WS08_1045 WS08_1046 PF00588 SpoU rRNA Methylase family WS08_1047 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_1048 PF01297 Periplasmic solute binding protein family WS08_1049 PF00950 WS08_1049 WS08_1050 PF00005 ABC transporter WS08_1051 PF06172 Cupin superfamily (DUF985) WS08_1052 PF01641 SelR domain WS08_1053 PF00542 Ribosomal protein L7/L12 C-terminal domain WS08_1053 PF16320 WS08_1053 WS08_1054 PF00466 Ribosomal protein L10 WS08_1055 PF00687 Ribosomal protein L1p/L10e family WS08_1056 PF00298 Ribosomal protein L11, RNA binding domain WS08_1056 PF03946 Ribosomal protein L11, N-terminal domain WS08_1057 PF02357 Transcription termination factor nusG WS08_1058 PF00584 SecE/Sec61-gamma subunits of protein translocation complex WS08_1059 PF00471 Ribosomal protein L33 WS08_1061 PF00588 SpoU rRNA Methylase family WS08_1061 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS08_1062 PF00636 Ribonuclease III domain WS08_1063 PF01406 tRNA synthetases class I (C) catalytic domain WS08_1063 PF09190 DALR domain WS08_1064 PF06983 3-demethylubiquinone-9 3-methyltransferase WS08_1065 PF02540 NAD synthase WS08_1066 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family WS08_1067 PF03180 NLPA lipoprotein WS08_1068 PF00005 ABC transporter WS08_1068 PF09383 NIL domain WS08_1069 PF00528 Binding-protein-dependent transport system inner membrane component WS08_1070 PF01196 Ribosomal protein L17 WS08_1071 PF01000 RNA polymerase Rpb3/RpoA insert domain WS08_1071 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WS08_1071 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WS08_1072 PF00411 Ribosomal protein S11 WS08_1073 PF00416 Ribosomal protein S13/S18 WS08_1074 PF00444 Ribosomal protein L36 WS08_1075 PF01176 Translation initiation factor 1A / IF-1 WS08_1076 PF00406 Adenylate kinase WS08_1077 PF00344 SecY translocase WS08_1078 PF00828 Ribosomal protein L18e/L15 WS08_1079 PF00327 Ribosomal protein L30p/L7e WS08_1080 PF00333 Ribosomal protein S5, N-terminal domain WS08_1080 PF03719 Ribosomal protein S5, C-terminal domain WS08_1081 PF00861 Ribosomal L18p/L5e family WS08_1082 PF00347 Ribosomal protein L6 WS08_1083 PF00410 Ribosomal protein S8 WS08_1084 PF00281 Ribosomal protein L5 WS08_1084 PF00673 ribosomal L5P family C-terminus WS08_1085 PF00467 KOW motif WS08_1085 PF17136 WS08_1085 WS08_1086 PF00238 Ribosomal protein L14p/L23e WS08_1087 PF00366 Ribosomal protein S17 WS08_1088 PF00831 Ribosomal L29 protein WS08_1089 PF00252 Ribosomal protein L16p/L10e WS08_1090 PF00189 Ribosomal protein S3, C-terminal domain WS08_1090 PF07650 KH domain WS08_1091 PF00237 Ribosomal protein L22p/L17e WS08_1092 PF00203 Ribosomal protein S19 WS08_1093 PF00181 Ribosomal Proteins L2, RNA binding domain WS08_1093 PF03947 Ribosomal Proteins L2, C-terminal domain WS08_1094 PF00276 Ribosomal protein L23 WS08_1095 PF00573 Ribosomal protein L4/L1 family WS08_1096 PF00297 Ribosomal protein L3 WS08_1097 PF00338 Ribosomal protein S10p/S20e WS08_1098 PF00348 Polyprenyl synthetase WS08_1099 PF00814 Glycoprotease family WS08_1100 PF00583 Acetyltransferase (GNAT) family WS08_1101 PF00583 Acetyltransferase (GNAT) family WS08_1102 PF00814 Glycoprotease family WS08_1103 PF01370 NAD dependent epimerase/dehydratase family WS08_1104 PF01643 Acyl-ACP thioesterase WS08_1105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS08_1106 PF13177 DNA polymerase III, delta subunit WS08_1107 PF06153 Protein of unknown function (DUF970) WS08_1108 PF02223 Thymidylate kinase WS08_1109 PF10704 WS08_1109 WS08_1110 PF02132 RecR protein WS08_1110 PF13662 Toprim domain WS08_1111 PF02575 YbaB/EbfC DNA-binding family WS08_1112 PF12169 DNA polymerase III subunits gamma and tau domain III WS08_1112 PF13177 DNA polymerase III, delta subunit WS08_1113 PF14437 WS08_1113 WS08_1114 PF05175 Methyltransferase small domain WS08_1115 PF00326 Prolyl oligopeptidase family WS08_1116 PF01432 Peptidase family M3 WS08_1116 PF08439 Oligopeptidase F WS08_1119 PF01381 Helix-turn-helix WS08_1120 PF08241 Methyltransferase domain WS08_1121 PF00465 Iron-containing alcohol dehydrogenase WS08_1122 PF00623 RNA polymerase Rpb1, domain 2 WS08_1122 PF04983 RNA polymerase Rpb1, domain 3 WS08_1122 PF04997 RNA polymerase Rpb1, domain 1 WS08_1122 PF04998 RNA polymerase Rpb1, domain 5 WS08_1122 PF05000 RNA polymerase Rpb1, domain 4 WS08_1123 PF00562 RNA polymerase Rpb2, domain 6 WS08_1123 PF04560 RNA polymerase Rpb2, domain 7 WS08_1123 PF04561 RNA polymerase Rpb2, domain 2 WS08_1123 PF04563 RNA polymerase beta subunit WS08_1123 PF04565 RNA polymerase Rpb2, domain 3 WS08_1123 PF10385 RNA polymerase beta subunit external 1 domain WS08_1125 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) WS08_1126 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_1126 PF02403 Seryl-tRNA synthetase N-terminal domain WS08_1127 PF01712 Deoxynucleoside kinase WS08_1128 PF02557 D-alanyl-D-alanine carboxypeptidase WS08_1129 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_1130 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain WS08_1130 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WS08_1131 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS08_1131 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS08_1132 PF00231 ATP synthase WS08_1133 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS08_1133 PF00306 ATP synthase alpha/beta chain, C terminal domain WS08_1133 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS08_1134 PF00213 ATP synthase delta (OSCP) subunit WS08_1135 PF00430 ATP synthase B/B' CF(0) WS08_1136 PF00137 ATP synthase subunit C WS08_1137 PF00119 ATP synthase A chain WS08_1138 PF00860 Permease family WS08_1139 PF01243 Pyridoxamine 5'-phosphate oxidase WS08_1140 PF14681 Uracil phosphoribosyltransferase WS08_1141 PF00464 Serine hydroxymethyltransferase WS08_1142 PF01300 Telomere recombination WS08_1142 PF03481 Putative GTP-binding controlling metal-binding WS08_1143 PF05175 Methyltransferase small domain WS08_1144 PF00472 RF-1 domain WS08_1144 PF03462 PCRF domain WS08_1145 PF00265 Thymidine kinase WS08_1146 PF07685 CobB/CobQ-like glutamine amidotransferase domain WS08_1147 PF08245 Mur ligase middle domain WS08_1147 PF08353 WS08_1147 WS08_1148 PF01238 Phosphomannose isomerase type I WS08_1149 PF06458 MucBP domain WS08_1150 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WS08_1151 PF00294 pfkB family carbohydrate kinase WS08_1152 PF01773 Na+ dependent nucleoside transporter N-terminus WS08_1152 PF07662 Na+ dependent nucleoside transporter C-terminus WS08_1153 PF01156 Inosine-uridine preferring nucleoside hydrolase WS08_1154 PF01156 Inosine-uridine preferring nucleoside hydrolase WS08_1157 PF00005 ABC transporter WS08_1157 PF00664 ABC transporter transmembrane region WS08_1158 PF00005 ABC transporter WS08_1158 PF00664 ABC transporter transmembrane region WS08_1159 PF01926 50S ribosome-binding GTPase WS08_1159 PF13167 WS08_1159 WS08_1159 PF16360 WS08_1159 WS08_1160 PF00300 Histidine phosphatase superfamily (branch 1) WS08_1161 PF03167 Uracil DNA glycosylase superfamily WS08_1162 PF02447 WS08_1162 WS08_1163 PF03372 Endonuclease/Exonuclease/phosphatase family WS08_1164 PF00171 Aldehyde dehydrogenase family WS08_1164 PF00465 Iron-containing alcohol dehydrogenase WS08_1165 PF02274 Amidinotransferase WS08_1166 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS08_1166 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS08_1167 PF13520 Amino acid permease WS08_1168 PF00696 Amino acid kinase family WS08_1169 PF01431 Peptidase family M13 WS08_1169 PF05649 Peptidase family M13 WS08_1170 PF16069 WS08_1170 WS08_1172 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase WS08_1172 PF09363 XFP C-terminal domain WS08_1172 PF09364 XFP N-terminal domain WS08_1173 PF00392 Bacterial regulatory proteins, gntR family WS08_1173 PF07702 UTRA domain WS08_1176 PF04073 Aminoacyl-tRNA editing domain WS08_1180 PF00005 ABC transporter WS08_1180 PF12848 ABC transporter WS08_1181 PF00950 WS08_1181 WS08_1182 PF00005 ABC transporter WS08_1183 PF01297 Periplasmic solute binding protein family WS08_1184 PF01047 MarR family WS08_1185 PF06161 WS08_1185 WS08_1186 PF00149 Calcineurin-like phosphoesterase WS08_1187 PF00854 POT family WS08_1188 PF06161 WS08_1188 WS08_1189 PF00512 His Kinase A (phospho-acceptor) domain WS08_1189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_1190 PF00072 Response regulator receiver domain WS08_1190 PF00486 Transcriptional regulatory protein, C terminal WS08_1191 PF06570 WS08_1191 WS08_1192 PF01926 50S ribosome-binding GTPase WS08_1192 PF06071 Protein of unknown function (DUF933) WS08_1193 PF06107 WS08_1193 WS08_1194 PF02195 ParB-like nuclease domain WS08_1194 PF08535 KorB domain WS08_1195 PF13614 AAA domain WS08_1196 PF02527 rRNA small subunit methyltransferase G WS08_1197 PF00633 Helix-hairpin-helix motif WS08_1197 PF00730 HhH-GPD superfamily base excision DNA repair protein WS08_1197 PF14815 NUDIX domain WS08_1199 PF00512 His Kinase A (phospho-acceptor) domain WS08_1199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_1200 PF00072 Response regulator receiver domain WS08_1200 PF00486 Transcriptional regulatory protein, C terminal WS08_1201 PF00501 AMP-binding enzyme WS08_1201 PF13193 AMP-binding enzyme C-terminal domain WS08_1202 PF00378 Enoyl-CoA hydratase/isomerase family WS08_1203 PF03061 Thioesterase superfamily WS08_1204 PF00857 Isochorismatase family WS08_1206 PF02229 Transcriptional Coactivator p15 (PC4) WS08_1207 PF00710 Asparaginase WS08_1208 PF13520 Amino acid permease WS08_1211 PF08240 Alcohol dehydrogenase GroES-like domain WS08_1211 PF13602 Zinc-binding dehydrogenase WS08_1213 PF00230 Major intrinsic protein WS08_1215 PF01381 Helix-turn-helix WS08_1221 PF03853 YjeF-related protein N-terminus WS08_1222 PF13454 FAD-NAD(P)-binding WS08_1224 PF13419 Haloacid dehalogenase-like hydrolase WS08_1225 PF03632 Glycosyl hydrolase family 65 central catalytic domain WS08_1225 PF03633 Glycosyl hydrolase family 65, C-terminal domain WS08_1225 PF03636 Glycosyl hydrolase family 65, N-terminal domain WS08_1226 PF00367 phosphotransferase system, EIIB WS08_1226 PF02378 Phosphotransferase system, EIIC WS08_1227 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WS08_1228 PF00392 Bacterial regulatory proteins, gntR family WS08_1228 PF07702 UTRA domain WS08_1229 PF01061 WS08_1229 WS08_1229 PF12698 ABC-2 family transporter protein WS08_1230 PF02082 Transcriptional regulator WS08_1231 PF00122 E1-E2 ATPase WS08_1231 PF00689 Cation transporting ATPase, C-terminus WS08_1231 PF00690 Cation transporter/ATPase, N-terminus WS08_1231 PF00702 haloacid dehalogenase-like hydrolase WS08_1232 PF01207 Dihydrouridine synthase (Dus) WS08_1233 PF01381 Helix-turn-helix WS08_1235 PF03631 WS08_1235 WS08_1237 PF07859 alpha/beta hydrolase fold WS08_1238 PF00324 Amino acid permease WS08_1239 PF01594 WS08_1239 WS08_1240 PF01040 UbiA prenyltransferase family WS08_1241 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_1242 PF00528 Binding-protein-dependent transport system inner membrane component WS08_1243 PF00005 ABC transporter WS08_1246 PF01022 Bacterial regulatory protein, arsR family WS08_1247 PF00122 E1-E2 ATPase WS08_1247 PF00702 haloacid dehalogenase-like hydrolase WS08_1248 PF00440 Bacterial regulatory proteins, tetR family WS08_1249 PF01938 TRAM domain WS08_1249 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_1250 PF00912 Transglycosylase WS08_1251 PF00117 Glutamine amidotransferase class-I WS08_1251 PF00958 GMP synthase C terminal domain WS08_1251 PF02540 NAD synthase WS08_1253 PF00205 Thiamine pyrophosphate enzyme, central domain WS08_1253 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_1253 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_1254 PF01501 Glycosyl transferase family 8 WS08_1255 PF00106 short chain dehydrogenase WS08_1256 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WS08_1257 PF00248 Aldo/keto reductase family WS08_1258 PF01638 HxlR-like helix-turn-helix WS08_1259 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WS08_1260 PF09335 WS08_1260 WS08_1262 PF01693 Caulimovirus viroplasmin WS08_1263 PF00075 RNase H WS08_1264 PF02386 Cation transport protein WS08_1265 PF02590 Predicted SPOUT methyltransferase WS08_1266 PF00324 Amino acid permease WS08_1267 PF02080 TrkA-C domain WS08_1267 PF02254 TrkA-N domain WS08_1268 PF00717 Peptidase S24-like WS08_1268 PF10502 Signal peptidase, peptidase S26 WS08_1269 PF02096 60Kd inner membrane protein WS08_1270 PF00825 Ribonuclease P