WS08_0003 SM00382 ATPases associated with a variety of cellular activities WS08_0003 SM00760 Bacterial dnaA protein helix-turn-helix domain WS08_0004 SM00480 DNA polymerase III beta subunit WS08_0007 SM00387 Histidine kinase-like ATPases WS08_0007 SM00433 TopoisomeraseII WS08_0008 SM00434 DNA Topoisomerase IV WS08_0014 SM01350 WS08_0014 WS08_0021 SM01350 WS08_0021 WS08_0040 SM00829 Enoylreductase WS08_0046 SM01400 WS08_0046 WS08_0051 SM00448 cheY-homologous receiver domain WS08_0051 SM00862 Transcriptional regulatory protein, C terminal WS08_0052 SM00091 PAS domain WS08_0052 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS08_0052 SM00387 Histidine kinase-like ATPases WS08_0052 SM00388 His Kinase A (phosphoacceptor) domain WS08_0055 SM00849 Metallo-beta-lactamase superfamily WS08_0056 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WS08_0058 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS08_0063 SM00487 DEAD-like helicases superfamily WS08_0063 SM00490 helicase superfamily c-terminal domain WS08_0065 SM01005 Alanine racemase, C-terminal domain WS08_0074 SM00072 Guanylate kinase homologues. WS08_0077 SM00382 ATPases associated with a variety of cellular activities WS08_0078 SM00062 Bacterial periplasmic substrate-binding proteins WS08_0078 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. WS08_0085 SM00382 ATPases associated with a variety of cellular activities WS08_0086 SM00382 ATPases associated with a variety of cellular activities WS08_0096 SM00855 Phosphoglycerate mutase family WS08_0097 SM00382 ATPases associated with a variety of cellular activities WS08_0110 SM00382 ATPases associated with a variety of cellular activities WS08_0112 SM00345 helix_turn_helix gluconate operon transcriptional repressor WS08_0112 SM00866 WS08_0112 WS08_0113 SM00363 S4 RNA-binding domain WS08_0113 SM01390 WS08_0113 WS08_0116 SM00788 Adenylosuccinate synthetase WS08_0124 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WS08_0126 SM00479 WS08_0126 WS08_0126 SM00481 DNA polymerase alpha chain like domain WS08_0129 SM00487 DEAD-like helicases superfamily WS08_0129 SM00490 helicase superfamily c-terminal domain WS08_0132 SM00831 Cation transporter/ATPase, N-terminus WS08_0134 SM00316 Ribosomal protein S1-like RNA-binding domain WS08_0134 SM00732 Likely ribonuclease with RNase H fold. WS08_0138 SM00322 K homology RNA-binding domain WS08_0138 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS08_0141 SM01240 WS08_0141 WS08_0146 SM00530 Helix-turn-helix XRE-family like proteins WS08_0160 SM00267 diguanylate cyclase WS08_0162 SM00267 diguanylate cyclase WS08_0173 SM00841 Elongation factor P, C-terminal WS08_0173 SM01185 WS08_0173 WS08_0181 SM00838 Elongation factor G C-terminus WS08_0181 SM00889 Elongation factor G, domain IV WS08_0183 SM00382 ATPases associated with a variety of cellular activities WS08_0197 SM01192 WS08_0197 WS08_0197 SM01193 WS08_0197 WS08_0199 SM00316 Ribosomal protein S1-like RNA-binding domain WS08_0199 SM00357 Cold shock protein domain WS08_0199 SM00955 WS08_0199 WS08_0201 SM00062 Bacterial periplasmic substrate-binding proteins WS08_0201 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. WS08_0202 SM00382 ATPases associated with a variety of cellular activities WS08_0203 SM00986 Uracil DNA glycosylase superfamily WS08_0203 SM00987 UreE urease accessory protein, C-terminal domain WS08_0207 SM00479 WS08_0207 WS08_0215 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_0216 SM00851 MGS-like domain WS08_0216 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_0217 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family WS08_0226 SM00493 WS08_0226 WS08_0227 SM00650 Ribosomal RNA adenine dimethylases WS08_0228 SM00116 Domain in cystathionine beta-synthase and other proteins. WS08_0236 SM00116 Domain in cystathionine beta-synthase and other proteins. WS08_0239 SM00487 DEAD-like helicases superfamily WS08_0239 SM00490 helicase superfamily c-terminal domain WS08_0239 SM00982 WS08_0239 WS08_0239 SM01058 CarD-like/TRCF domain WS08_0241 SM00363 S4 RNA-binding domain WS08_0245 SM00382 ATPases associated with a variety of cellular activities WS08_0251 SM00530 Helix-turn-helix XRE-family like proteins WS08_0254 SM00382 ATPases associated with a variety of cellular activities WS08_0255 SM00382 ATPases associated with a variety of cellular activities WS08_0256 SM00047 Lysozyme subfamily 2 WS08_0262 SM00357 Cold shock protein domain WS08_0267 SM00257 Lysin motif WS08_0274 SM00382 ATPases associated with a variety of cellular activities WS08_0281 SM01057 Eukaryotic-type carbonic anhydrase WS08_0284 SM00382 ATPases associated with a variety of cellular activities WS08_0285 SM00062 Bacterial periplasmic substrate-binding proteins WS08_0298 SM00740 WS08_0298 WS08_0303 SM00842 Cell division protein FtsA WS08_0304 SM00864 Tubulin/FtsZ family, GTPase domain WS08_0304 SM00865 Tubulin/FtsZ family, C-terminal domain WS08_0307 SM00363 S4 RNA-binding domain WS08_0310 SM00855 Phosphoglycerate mutase family WS08_0311 SM00028 Tetratricopeptide repeats WS08_0319 SM00487 DEAD-like helicases superfamily WS08_0319 SM00490 helicase superfamily c-terminal domain WS08_0322 SM00331 Sigma factor PP2C-like phosphatases WS08_0322 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain WS08_0323 SM00220 Serine/Threonine protein kinases, catalytic domain WS08_0323 SM00740 WS08_0323 WS08_0326 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain WS08_0329 SM01120 WS08_0329 WS08_0329 SM01121 WS08_0329 WS08_0330 SM00487 DEAD-like helicases superfamily WS08_0330 SM00490 helicase superfamily c-terminal domain WS08_0333 SM00358 Double-stranded RNA binding motif WS08_0333 SM00535 Ribonuclease III family WS08_0334 SM00968 SMC proteins Flexible Hinge Domain WS08_0335 SM00382 ATPases associated with a variety of cellular activities WS08_0335 SM00962 SRP54-type protein, GTPase domain WS08_0335 SM00963 SRP54-type protein, helical bundle domain WS08_0337 SM00382 ATPases associated with a variety of cellular activities WS08_0337 SM00962 SRP54-type protein, GTPase domain WS08_0337 SM00963 SRP54-type protein, helical bundle domain WS08_0358 SM00354 helix_turn _helix lactose operon repressor WS08_0365 SM00287 Bacterial SH3 domain homologues WS08_0365 SM00646 WS08_0365 WS08_0385 SM00382 ATPases associated with a variety of cellular activities WS08_0385 SM00843 WS08_0385 WS08_0386 SM00382 ATPases associated with a variety of cellular activities WS08_0390 SM00465 GIY-YIG type nucleases (URI domain) WS08_0395 SM01240 WS08_0395 WS08_0396 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS08_0397 SM00382 ATPases associated with a variety of cellular activities WS08_0398 SM01323 WS08_0398 WS08_0401 SM00487 DEAD-like helicases superfamily WS08_0401 SM00490 helicase superfamily c-terminal domain WS08_0402 SM01266 WS08_0402 WS08_0403 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WS08_0405 SM00732 Likely ribonuclease with RNase H fold. WS08_0408 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS08_0409 SM00849 Metallo-beta-lactamase superfamily WS08_0411 SM01387 WS08_0411 WS08_0414 SM00849 Metallo-beta-lactamase superfamily WS08_0418 SM00382 ATPases associated with a variety of cellular activities WS08_0418 SM00994 ClpX C4-type zinc finger WS08_0418 SM01086 C-terminal, D2-small domain, of ClpB protein WS08_0422 SM00463 Small MutS-related domain WS08_0422 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WS08_0422 SM00534 ATPase domain of DNA mismatch repair MUTS family WS08_0428 SM00954 Region found in RelA / SpoT proteins WS08_0431 SM00116 Domain in cystathionine beta-synthase and other proteins. WS08_0431 SM00924 MgtE intracellular N domain WS08_0433 SM00322 K homology RNA-binding domain WS08_0441 SM00904 Riboflavin kinase WS08_0451 SM00844 GA module WS08_0454 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WS08_0454 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WS08_0454 SM00493 WS08_0454 WS08_0459 SM01207 WS08_0459 WS08_0460 SM00387 Histidine kinase-like ATPases WS08_0460 SM00433 TopoisomeraseII WS08_0461 SM00434 DNA Topoisomerase IV WS08_0464 SM00244 prohibitin homologues WS08_0465 SM01131 WS08_0465 WS08_0466 SM00345 helix_turn_helix gluconate operon transcriptional repressor WS08_0467 SM00116 Domain in cystathionine beta-synthase and other proteins. WS08_0467 SM00382 ATPases associated with a variety of cellular activities WS08_0476 SM00849 Metallo-beta-lactamase superfamily WS08_0482 SM00838 Elongation factor G C-terminus WS08_0489 SM00400 zinc finger WS08_0489 SM00493 WS08_0489 WS08_0492 SM00448 cheY-homologous receiver domain WS08_0492 SM00862 Transcriptional regulatory protein, C terminal WS08_0493 SM00387 Histidine kinase-like ATPases WS08_0493 SM00388 His Kinase A (phosphoacceptor) domain WS08_0499 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs WS08_0499 SM00474 3'-5' exonuclease WS08_0499 SM00475 5'-3' exonuclease WS08_0499 SM00482 DNA polymerase A domain WS08_0502 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain WS08_0502 SM01232 WS08_0502 WS08_0508 SM00448 cheY-homologous receiver domain WS08_0508 SM00862 Transcriptional regulatory protein, C terminal WS08_0509 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS08_0509 SM00387 Histidine kinase-like ATPases WS08_0509 SM00388 His Kinase A (phosphoacceptor) domain WS08_0512 SM00448 cheY-homologous receiver domain WS08_0512 SM00850 LytTr DNA-binding domain WS08_0522 SM00382 ATPases associated with a variety of cellular activities WS08_0525 SM00635 Bacterial Ig-like domain 2 WS08_0531 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WS08_0531 SM00493 WS08_0531 WS08_0561 SM00878 Biotin carboxylase C-terminal domain WS08_0564 SM00825 Beta-ketoacyl synthase WS08_0565 SM00822 WS08_0565 WS08_0566 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. WS08_0570 SM00347 helix_turn_helix multiple antibiotic resistance protein WS08_0573 SM00382 ATPases associated with a variety of cellular activities WS08_0588 SM00267 diguanylate cyclase WS08_0593 SM00382 ATPases associated with a variety of cellular activities WS08_0596 SM00487 DEAD-like helicases superfamily WS08_0596 SM00490 helicase superfamily c-terminal domain WS08_0599 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS08_0599 SM00292 breast cancer carboxy-terminal domain WS08_0599 SM00532 Ligase N family WS08_0605 SM00981 WS08_0605 WS08_0616 SM00479 WS08_0616 WS08_0616 SM00491 WS08_0616 WS08_0623 SM00507 HNH nucleases WS08_0636 SM00562 WS08_0636 WS08_0649 SM00382 ATPases associated with a variety of cellular activities WS08_0653 SM00382 ATPases associated with a variety of cellular activities WS08_0657 SM00861 Transketolase, pyrimidine binding domain WS08_0660 SM00642 Alpha-amylase domain WS08_0664 SM00257 Lysin motif WS08_0673 SM00354 helix_turn _helix lactose operon repressor WS08_0676 SM01209 WS08_0676 WS08_0676 SM01210 WS08_0676 WS08_0677 SM00798 AICARFT/IMPCHase bienzyme WS08_0677 SM00851 MGS-like domain WS08_0682 SM01211 WS08_0682 WS08_0686 SM01001 AIR carboxylase WS08_0693 SM00838 Elongation factor G C-terminus WS08_0711 SM00028 Tetratricopeptide repeats WS08_0720 SM00411 bacterial (prokaryotic) histone like domain WS08_0722 SM00316 Ribosomal protein S1-like RNA-binding domain WS08_0724 SM00257 Lysin motif WS08_0725 SM00487 DEAD-like helicases superfamily WS08_0725 SM00490 helicase superfamily c-terminal domain WS08_0728 SM00363 S4 RNA-binding domain WS08_0742 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS08_0742 SM00954 Region found in RelA / SpoT proteins WS08_0743 SM00481 DNA polymerase alpha chain like domain WS08_0746 SM00382 ATPases associated with a variety of cellular activities WS08_0749 SM00487 DEAD-like helicases superfamily WS08_0761 SM00563 Phosphate acyltransferases WS08_0769 SM00271 DnaJ molecular chaperone homology domain WS08_0773 SM00641 Glycosyl hydrolases family 25 WS08_0781 SM00382 ATPases associated with a variety of cellular activities WS08_0785 SM00357 Cold shock protein domain WS08_0791 SM00382 ATPases associated with a variety of cellular activities WS08_0797 SM00155 Phospholipase D. Active site motifs. WS08_0802 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS08_0809 SM00836 DALR anticodon binding domain WS08_0809 SM01016 Arginyl tRNA synthetase N terminal dom WS08_0814 SM00046 Diacylglycerol kinase catalytic domain (presumed) WS08_0815 SM00845 GatB domain WS08_0823 SM01400 WS08_0823 WS08_0834 SM00267 diguanylate cyclase WS08_0841 SM00354 helix_turn _helix lactose operon repressor WS08_0846 SM00529 Helix-turn-helix diphteria tox regulatory element WS08_0849 SM00881 CoA binding domain WS08_0850 SM00487 DEAD-like helicases superfamily WS08_0850 SM00490 helicase superfamily c-terminal domain WS08_0855 SM00014 Acid phosphatase homologues WS08_0861 SM00530 Helix-turn-helix XRE-family like proteins WS08_0864 SM00998 Adenylosuccinate lyase C-terminus WS08_0866 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_0867 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_0869 SM00363 S4 RNA-binding domain WS08_0874 SM00838 Elongation factor G C-terminus WS08_0876 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS08_0879 SM00530 Helix-turn-helix XRE-family like proteins WS08_0883 SM00382 ATPases associated with a variety of cellular activities WS08_0884 SM00062 Bacterial periplasmic substrate-binding proteins WS08_0885 SM00062 Bacterial periplasmic substrate-binding proteins WS08_0887 SM00892 DNA/RNA non-specific endonuclease WS08_0895 SM00316 Ribosomal protein S1-like RNA-binding domain WS08_0898 SM01409 WS08_0898 WS08_0899 SM00072 Guanylate kinase homologues. WS08_0911 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WS08_0913 SM00853 MutL C terminal dimerisation domain WS08_0913 SM01340 WS08_0913 WS08_0914 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WS08_0914 SM00534 ATPase domain of DNA mismatch repair MUTS family WS08_0919 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS08_0921 SM01103 WS08_0921 WS08_0928 SM00883 Chaperonin 10 Kd subunit WS08_0929 SM00382 ATPases associated with a variety of cellular activities WS08_0936 SM00382 ATPases associated with a variety of cellular activities WS08_0944 SM00382 ATPases associated with a variety of cellular activities WS08_0945 SM00382 ATPases associated with a variety of cellular activities WS08_0968 SM00829 Enoylreductase WS08_0971 SM01133 WS08_0971 WS08_0976 SM00382 ATPases associated with a variety of cellular activities WS08_0979 SM00725 NEAr Transporter domain WS08_0980 SM00364 Leucine-rich repeats, bacterial type WS08_0980 SM00365 Leucine-rich repeat, SDS22-like subfamily WS08_0990 SM01230 WS08_0990 WS08_0991 SM00422 helix_turn_helix, mercury resistance WS08_0994 SM00450 Rhodanese Homology Domain WS08_1003 SM00873 B3/4 domain WS08_1003 SM00874 tRNA synthetase B5 domain WS08_1003 SM00896 Ferredoxin-fold anticodon binding domain WS08_1007 SM00967 RNA 2'-O ribose methyltransferase substrate binding WS08_1010 SM00937 WS08_1010 WS08_1011 SM00957 SecA DEAD-like domain WS08_1011 SM00958 SecA preprotein cross-linking domain WS08_1013 SM00382 ATPases associated with a variety of cellular activities WS08_1017 SM00257 Lysin motif WS08_1018 SM00382 ATPases associated with a variety of cellular activities WS08_1018 SM01086 C-terminal, D2-small domain, of ClpB protein WS08_1019 SM00829 Enoylreductase WS08_1024 SM00347 helix_turn_helix multiple antibiotic resistance protein WS08_1034 SM00382 ATPases associated with a variety of cellular activities WS08_1043 SM00382 ATPases associated with a variety of cellular activities WS08_1044 SM00382 ATPases associated with a variety of cellular activities WS08_1050 SM00382 ATPases associated with a variety of cellular activities WS08_1056 SM00649 Ribosomal protein L11/L12 WS08_1057 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. WS08_1061 SM00967 RNA 2'-O ribose methyltransferase substrate binding WS08_1062 SM00535 Ribonuclease III family WS08_1063 SM00840 WS08_1063 WS08_1068 SM00382 ATPases associated with a variety of cellular activities WS08_1068 SM00930 WS08_1068 WS08_1071 SM00662 RNA polymerases D WS08_1075 SM00316 Ribosomal protein S1-like RNA-binding domain WS08_1085 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WS08_1086 SM01374 WS08_1086 WS08_1090 SM00322 K homology RNA-binding domain WS08_1093 SM01382 WS08_1093 WS08_1093 SM01383 WS08_1093 WS08_1097 SM01403 WS08_1097 WS08_1110 SM00493 WS08_1110 WS08_1112 SM00382 ATPases associated with a variety of cellular activities WS08_1119 SM00530 Helix-turn-helix XRE-family like proteins WS08_1122 SM00663 RNA polymerase I subunit A N-terminus WS08_1131 SM00382 ATPases associated with a variety of cellular activities WS08_1144 SM00937 WS08_1144 WS08_1157 SM00382 ATPases associated with a variety of cellular activities WS08_1158 SM00382 ATPases associated with a variety of cellular activities WS08_1160 SM00855 Phosphoglycerate mutase family WS08_1161 SM00986 Uracil DNA glycosylase superfamily WS08_1161 SM00987 UreE urease accessory protein, C-terminal domain WS08_1173 SM00345 helix_turn_helix gluconate operon transcriptional repressor WS08_1173 SM00866 WS08_1173 WS08_1180 SM00382 ATPases associated with a variety of cellular activities WS08_1182 SM00382 ATPases associated with a variety of cellular activities WS08_1184 SM00347 helix_turn_helix multiple antibiotic resistance protein WS08_1189 SM00387 Histidine kinase-like ATPases WS08_1189 SM00388 His Kinase A (phosphoacceptor) domain WS08_1190 SM00448 cheY-homologous receiver domain WS08_1190 SM00862 Transcriptional regulatory protein, C terminal WS08_1194 SM00470 ParB-like nuclease domain WS08_1197 SM00478 endonuclease III WS08_1199 SM00387 Histidine kinase-like ATPases WS08_1199 SM00388 His Kinase A (phosphoacceptor) domain WS08_1200 SM00448 cheY-homologous receiver domain WS08_1200 SM00862 Transcriptional regulatory protein, C terminal WS08_1207 SM00870 WS08_1207 WS08_1211 SM00829 Enoylreductase WS08_1215 SM00530 Helix-turn-helix XRE-family like proteins WS08_1228 SM00345 helix_turn_helix gluconate operon transcriptional repressor WS08_1228 SM00866 WS08_1228 WS08_1231 SM00831 Cation transporter/ATPase, N-terminus WS08_1233 SM00530 Helix-turn-helix XRE-family like proteins WS08_1241 SM00062 Bacterial periplasmic substrate-binding proteins WS08_1243 SM00382 ATPases associated with a variety of cellular activities WS08_1246 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor