locus-tag	class	description
AUC62_00002	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AUC62_00006	COG1368	sulfuric ester hydrolase activity
AUC62_00007	COG2153	protein acetylation
AUC62_00010	COG0187	DNA topoisomerase II activity
AUC62_00011	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AUC62_00012	COG2501	S4 domain
AUC62_00013	COG0592	DNA-directed DNA polymerase activity
AUC62_00014	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AUC62_00015	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AUC62_00016	COG0594	ribonuclease P activity
AUC62_00017	COG0706	membrane insertase activity
AUC62_00019	COG1120	ATPase activity
AUC62_00021	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUC62_00024	COG0569	domain protein
AUC62_00025	COG1113	amino acid transport
AUC62_00029	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AUC62_00031	COG0446	pyridine nucleotide-disulphide oxidoreductase
AUC62_00033	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AUC62_00034	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AUC62_00036	COG1136	(ABC) transporter
AUC62_00037	COG0577	efflux transmembrane transporter activity
AUC62_00038	COG2409	Drug exporters of the RND superfamily
AUC62_00038	COG1033	growth of symbiont in host cell
AUC62_00039	COG0561	phosphatase activity
AUC62_00041	COG0328	RNA-DNA hybrid ribonuclease activity
AUC62_00045	COG3152	Membrane
AUC62_00046	COG2252	PERMEase
AUC62_00054	COG1881	PFAM PEBP family protein
AUC62_00068	COG1476	TRANSCRIPTIONal
AUC62_00073	COG0517	IMP dehydrogenase activity
AUC62_00073	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AUC62_00074	COG2723	6-phospho-beta-galactosidase activity
AUC62_00078	COG0697	spore germination
AUC62_00081	COG1744	ABC transporter substrate-binding protein PnrA-like
AUC62_00082	COG0137	argininosuccinate synthase activity
AUC62_00083	COG0165	Argininosuccinate lyase
AUC62_00084	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AUC62_00085	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AUC62_00087	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AUC62_00088	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AUC62_00089	COG0505	Belongs to the CarA family
AUC62_00090	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AUC62_00094	COG1131	(ABC) transporter
AUC62_00099	COG0789	Transcriptional regulator
AUC62_00102	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AUC62_00104	COG0697	spore germination
AUC62_00105	COG1744	ABC transporter substrate-binding protein PnrA-like
AUC62_00109	COG1846	Transcriptional regulator
AUC62_00110	COG1132	(ABC) transporter
AUC62_00112	COG0656	L-ascorbic acid biosynthetic process
AUC62_00114	COG4619	ABC transporter
AUC62_00115	COG0390	transport system, permease component
AUC62_00117	COG1131	(ABC) transporter
AUC62_00119	COG1126	abc transporter atp-binding protein
AUC62_00120	COG0765	amino acid transport
AUC62_00122	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUC62_00123	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUC62_00124	COG1254	Belongs to the acylphosphatase family
AUC62_00126	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AUC62_00126	COG0392	lysyltransferase activity
AUC62_00128	COG0628	permease
AUC62_00134	COG1113	amino acid transport
AUC62_00139	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AUC62_00142	COG2855	membrane
AUC62_00143	COG3620	sequence-specific DNA binding
AUC62_00145	COG2855	membrane
AUC62_00146	COG0583	DNA-binding transcription factor activity
AUC62_00148	COG2070	2-Nitropropane dioxygenase
AUC62_00151	COG1228	amidohydrolase
AUC62_00152	COG0531	amino acid
AUC62_00154	COG3223	Belongs to the PsiE family
AUC62_00156	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AUC62_00158	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AUC62_00160	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AUC62_00161	COG4166	transmembrane transport
AUC62_00162	COG2267	carboxylic ester hydrolase activity
AUC62_00164	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AUC62_00167	COG0477	Major facilitator Superfamily
AUC62_00168	COG4975	Glucose uptake
AUC62_00170	COG0531	amino acid
AUC62_00171	COG1113	amino acid transport
AUC62_00172	COG0531	amino acid
AUC62_00173	COG0252	asparaginase activity
AUC62_00174	COG4443	Transcriptional Coactivator p15 (PC4)
AUC62_00176	COG2226	methyltransferase
AUC62_00177	COG1335	isochorismatase
AUC62_00178	COG2050	protein possibly involved in aromatic compounds catabolism
AUC62_00179	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AUC62_00180	COG0318	PFAM AMP-dependent synthetase and ligase
AUC62_00183	COG0745	RESPONSE REGULATOR receiver
AUC62_00184	COG5002	protein histidine kinase activity
AUC62_00192	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AUC62_00193	COG1194	a g-specific adenine glycosylase
AUC62_00195	COG0357	Ribosomal RNA small subunit methyltransferase G
AUC62_00196	COG1192	Involved in chromosome partitioning
AUC62_00197	COG1475	DNA binding
AUC62_00198	COG4481	Protein conserved in bacteria
AUC62_00199	COG0012	GTP binding
AUC62_00201	COG0745	RESPONSE REGULATOR receiver
AUC62_00203	COG1686	Belongs to the peptidase S11 family
AUC62_00213	COG3104	oligopeptide transport
AUC62_00214	COG0477	Major facilitator Superfamily
AUC62_00215	COG4975	Glucose uptake
AUC62_00224	COG3091	SprT-like family
AUC62_00225	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AUC62_00225	COG2755	lipolytic protein G-D-S-L family
AUC62_00228	COG1846	Transcriptional regulator
AUC62_00230	COG1121	(ABC) transporter
AUC62_00231	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AUC62_00232	COG0488	(ABC) transporter
AUC62_00233	COG0534	Mate efflux family protein
AUC62_00236	COG3940	Belongs to the glycosyl hydrolase 43 family
AUC62_00241	COG2160	L-arabinose isomerase activity
AUC62_00242	COG0656	L-ascorbic acid biosynthetic process
AUC62_00249	COG0765	amino acid transport
AUC62_00257	COG1215	transferase activity, transferring glycosyl groups
AUC62_00258	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AUC62_00259	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AUC62_00262	COG1418	mRNA catabolic process
AUC62_00263	COG2814	Major facilitator Superfamily
AUC62_00264	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AUC62_00265	COG2188	Transcriptional regulator
AUC62_00266	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
AUC62_00269	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AUC62_00269	COG0463	Glycosyl transferase, family 2
AUC62_00273	COG1442	glycosyl transferase family 8
AUC62_00273	COG1216	Glycosyl transferase, family 2
AUC62_00274	COG1215	transferase activity, transferring glycosyl groups
AUC62_00275	COG2801	Transposase and inactivated derivatives
AUC62_00278	COG5039	Polysaccharide pyruvyl transferase
AUC62_00287	COG3590	peptidase
AUC62_00288	COG1012	belongs to the aldehyde dehydrogenase family
AUC62_00288	COG1454	alcohol dehydrogenase
AUC62_00290	COG0708	Exodeoxyribonuclease III
AUC62_00294	COG0588	phosphoglycerate mutase activity
AUC62_00298	COG1132	(ABC) transporter
AUC62_00299	COG1132	(ABC) transporter
AUC62_00304	COG0110	maltose O-acetyltransferase activity
AUC62_00306	COG1482	cell wall glycoprotein biosynthetic process
AUC62_00307	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AUC62_00308	COG3442	glutamine amidotransferase
AUC62_00310	COG1435	thymidine kinase activity
AUC62_00311	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AUC62_00312	COG2890	protein-(glutamine-N5) methyltransferase activity
AUC62_00313	COG0009	L-threonylcarbamoyladenylate synthase
AUC62_00314	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AUC62_00315	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AUC62_00316	COG0702	epimerase
AUC62_00318	COG2233	PERMEase
AUC62_00319	COG0356	it plays a direct role in the translocation of protons across the membrane
AUC62_00320	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AUC62_00321	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AUC62_00322	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AUC62_00323	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AUC62_00324	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AUC62_00325	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AUC62_00326	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AUC62_00327	COG1876	peptidase activity
AUC62_00328	COG1428	Deoxynucleoside kinase
AUC62_00329	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AUC62_00334	COG4463	regulation of RNA biosynthetic process
AUC62_00335	COG0542	response to heat
AUC62_00336	COG0085	RNA polymerase activity
AUC62_00340	COG1979	alcohol dehydrogenase
AUC62_00344	COG1309	transcriptional regulator
AUC62_00345	COG0500	methyltransferase
AUC62_00354	COG3620	sequence-specific DNA binding
AUC62_00356	COG2807	transmembrane transport
AUC62_00358	COG2813	Specifically methylates the guanine in position
AUC62_00359	COG0590	tRNA wobble adenosine to inosine editing
AUC62_00360	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AUC62_00365	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AUC62_00366	COG3870	Protein conserved in bacteria
AUC62_00370	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AUC62_00371	COG1214	PFAM Peptidase M22, glycoprotease
AUC62_00372	COG0456	acetyltransferase
AUC62_00374	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AUC62_00375	COG0142	geranyltranstransferase activity
AUC62_00376	COG0051	transcription antitermination factor activity, RNA binding
AUC62_00377	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AUC62_00379	COG0089	rRNA binding
AUC62_00380	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AUC62_00381	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AUC62_00382	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AUC62_00383	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AUC62_00384	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AUC62_00385	COG0255	Belongs to the universal ribosomal protein uL29 family
AUC62_00387	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AUC62_00388	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AUC62_00389	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AUC62_00390	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AUC62_00391	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AUC62_00392	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AUC62_00393	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AUC62_00394	COG1841	ribosomal large subunit assembly
AUC62_00395	COG0200	Binds to the 23S rRNA
AUC62_00398	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AUC62_00399	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AUC62_00401	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AUC62_00402	COG0202	RNA polymerase activity
AUC62_00403	COG0203	ribosomal protein L17
AUC62_00408	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AUC62_00411	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AUC62_00416	COG0583	DNA-binding transcription factor activity
AUC62_00417	COG0114	fumarate hydratase activity
AUC62_00418	COG1053	succinate dehydrogenase
AUC62_00419	COG0471	metal ion transport
AUC62_00420	COG0039	L-malate dehydrogenase activity
AUC62_00421	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
AUC62_00422	COG0215	cysteine-tRNA ligase activity
AUC62_00423	COG0626	cystathionine gamma-synthase activity
AUC62_00424	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AUC62_00425	COG1464	Belongs to the NlpA lipoprotein family
AUC62_00426	COG1854	S-ribosylhomocysteine lyase activity
AUC62_00427	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
AUC62_00428	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AUC62_00431	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AUC62_00432	COG0250	Participates in transcription elongation, termination and antitermination
AUC62_00433	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AUC62_00434	COG0081	regulation of translation
AUC62_00435	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AUC62_00436	COG0222	ribosome binding
AUC62_00438	COG1121	(ABC) transporter
AUC62_00439	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AUC62_00440	COG0803	Belongs to the bacterial solute-binding protein 9 family
AUC62_00441	COG1252	NADH dehydrogenase
AUC62_00443	COG1122	ATPase activity
AUC62_00444	COG1122	ATPase activity
AUC62_00446	COG0101	tRNA pseudouridine synthase activity
AUC62_00447	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AUC62_00449	COG4221	oxidoreductase activity
AUC62_00452	COG0028	Belongs to the TPP enzyme family
AUC62_00455	COG1573	uracil-dna glycosylase
AUC62_00461	COG0671	phosphoesterase, PA-phosphatase related
AUC62_00463	COG2814	Major facilitator Superfamily
AUC62_00464	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AUC62_00466	COG1660	Displays ATPase and GTPase activities
AUC62_00467	COG0391	Required for morphogenesis under gluconeogenic growth conditions
AUC62_00468	COG1481	regulation of sporulation
AUC62_00469	COG0740	serine-type endopeptidase activity
AUC62_00472	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUC62_00472	COG1263	PTS System
AUC62_00474	COG1914	H( )-stimulated, divalent metal cation uptake system
AUC62_00478	COG0039	L-malate dehydrogenase activity
AUC62_00479	COG0028	Belongs to the TPP enzyme family
AUC62_00480	COG3527	Alpha-acetolactate decarboxylase
AUC62_00482	COG3942	CHAP domain
AUC62_00482	COG1388	LysM domain
AUC62_00483	COG0791	NLP P60 protein
AUC62_00485	COG0756	dUTP diphosphatase activity
AUC62_00487	COG4956	integral membrane protein (PIN domain superfamily)
AUC62_00489	COG0653	protein targeting
AUC62_00490	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AUC62_00494	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AUC62_00496	COG1733	regulation of RNA biosynthetic process
AUC62_00497	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AUC62_00498	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUC62_00498	COG0072	phenylalanine-tRNA ligase activity
AUC62_00499	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AUC62_00500	COG0514	ATP-dependent DNA helicase (RecQ)
AUC62_00501	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AUC62_00503	COG0768	penicillin binding
AUC62_00504	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AUC62_00507	COG1940	carbohydrate kinase activity
AUC62_00508	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUC62_00508	COG3409	Peptidoglycan-binding domain 1 protein
AUC62_00509	COG3942	CHAP domain
AUC62_00513	COG0584	glycerophosphoryl diester phosphodiesterase
AUC62_00514	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AUC62_00515	COG0789	Transcriptional regulator
AUC62_00516	COG0174	glutamine synthetase
AUC62_00521	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AUC62_00522	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AUC62_00523	COG1472	Belongs to the glycosyl hydrolase 3 family
AUC62_00525	COG1132	(ABC) transporter
AUC62_00526	COG0778	Nitroreductase
AUC62_00527	COG1169	isochorismate synthase
AUC62_00528	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
AUC62_00529	COG0596	Alpha beta hydrolase
AUC62_00530	COG4948	Mandelate Racemase Muconate Lactonizing
AUC62_00534	COG0737	Belongs to the 5'-nucleotidase family
AUC62_00535	COG4470	Protein conserved in bacteria
AUC62_00536	COG0647	UMP catabolic process
AUC62_00537	COG4166	transmembrane transport
AUC62_00538	COG0673	inositol 2-dehydrogenase activity
AUC62_00542	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AUC62_00543	COG0573	inorganic phosphate transmembrane transporter activity
AUC62_00544	COG0581	inorganic phosphate transmembrane transporter activity
AUC62_00545	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AUC62_00546	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AUC62_00547	COG0704	Plays a role in the regulation of phosphate uptake
AUC62_00548	COG2137	regulation of response to DNA damage stimulus
AUC62_00553	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AUC62_00555	COG5506	Protein of unknown function (DUF1694)
AUC62_00557	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AUC62_00579	COG1272	protein, Hemolysin III
AUC62_00586	COG0525	valine-tRNA ligase activity
AUC62_00588	COG0285	dihydrofolate synthase activity
AUC62_00592	COG0488	(ABC) transporter
AUC62_00593	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AUC62_00594	COG0459	protein refolding
AUC62_00595	COG0531	amino acid
AUC62_00597	COG1181	Belongs to the D-alanine--D-alanine ligase family
AUC62_00598	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
AUC62_00599	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AUC62_00601	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AUC62_00602	COG1713	HD superfamily hydrolase involved in NAD metabolism
AUC62_00603	COG0799	negative regulation of ribosome biogenesis
AUC62_00604	COG2226	methyltransferase
AUC62_00605	COG1323	Belongs to the UPF0348 family
AUC62_00607	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AUC62_00608	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AUC62_00628	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AUC62_00630	COG0363	glucosamine-6-phosphate deaminase activity
AUC62_00631	COG0776	regulation of translation
AUC62_00633	COG0577	efflux transmembrane transporter activity
AUC62_00634	COG1136	(ABC) transporter
AUC62_00637	COG4720	Psort location CytoplasmicMembrane, score
AUC62_00638	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AUC62_00639	COG1570	exodeoxyribonuclease VII activity
AUC62_00641	COG0142	geranyltranstransferase activity
AUC62_00642	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AUC62_00643	COG1438	arginine binding
AUC62_00644	COG0497	DNA recombination
AUC62_00646	COG0194	GDP metabolic process
AUC62_00648	COG0586	Pfam SNARE associated Golgi protein
AUC62_00649	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AUC62_00650	COG1098	S1 RNA binding domain
AUC62_00673	COG4684	Psort location CytoplasmicMembrane, score
AUC62_00674	COG1271	oxidase subunit
AUC62_00675	COG1294	oxidase, subunit
AUC62_00676	COG4988	ABC transporter
AUC62_00677	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AUC62_00678	COG1705	Flagellar rod assembly protein muramidase FlgJ
AUC62_00678	COG1388	LysM domain
AUC62_00679	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AUC62_00683	COG0494	nUDIX hydrolase
AUC62_00685	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AUC62_00686	COG0346	lactoylglutathione lyase activity
AUC62_00687	COG0400	carboxylic ester hydrolase activity
AUC62_00689	COG0741	lytic transglycosylase activity
AUC62_00693	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AUC62_00694	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUC62_00695	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUC62_00697	COG4120	Belongs to the binding-protein-dependent transport system permease family
AUC62_00699	COG0038	chloride channel
AUC62_00700	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AUC62_00701	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AUC62_00702	COG1307	EDD domain protein, DegV family
AUC62_00703	COG2190	(PTS) system
AUC62_00703	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUC62_00703	COG1263	PTS System
AUC62_00706	COG2003	Belongs to the UPF0758 family
AUC62_00707	COG1077	Cell shape determining protein MreB Mrl
AUC62_00708	COG1792	Involved in formation and maintenance of cell shape
AUC62_00709	COG3338	carbonate dehydratase activity
AUC62_00711	COG0765	amino acid transport
AUC62_00712	COG1126	abc transporter atp-binding protein
AUC62_00715	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AUC62_00716	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AUC62_00717	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AUC62_00720	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AUC62_00722	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AUC62_00723	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AUC62_00724	COG0138	bifunctional purine biosynthesis protein purh
AUC62_00725	COG0151	Belongs to the GarS family
AUC62_00726	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AUC62_00729	COG0446	pyridine nucleotide-disulphide oxidoreductase
AUC62_00732	COG0833	amino acid
AUC62_00734	COG2264	protein methyltransferase activity
AUC62_00735	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AUC62_00737	COG2001	Belongs to the MraZ family
AUC62_00738	COG0275	rRNA processing
AUC62_00741	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AUC62_00742	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AUC62_00743	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AUC62_00744	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AUC62_00745	COG0849	cell division
AUC62_00747	COG1799	cell septum assembly
AUC62_00750	COG3599	regulation of cell shape
AUC62_00754	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AUC62_00755	COG0217	transcriptional regulatory protein
AUC62_00756	COG2252	PERMEase
AUC62_00757	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AUC62_00765	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AUC62_00766	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AUC62_00767	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AUC62_00768	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AUC62_00768	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AUC62_00769	COG0631	protein serine/threonine phosphatase activity
AUC62_00770	COG0515	serine threonine protein kinase
AUC62_00770	COG2815	serine threonine protein kinase
AUC62_00771	COG1162	GTPase activity
AUC62_00772	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AUC62_00774	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AUC62_00776	COG1461	Dihydroxyacetone kinase
AUC62_00779	COG0438	transferase activity, transferring glycosyl groups
AUC62_00781	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AUC62_00782	COG0416	fatty acid biosynthetic process
AUC62_00783	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUC62_00784	COG0571	ribonuclease III activity
AUC62_00785	COG1196	nuclear chromosome segregation
AUC62_00786	COG0552	protein localization to endoplasmic reticulum
AUC62_00788	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AUC62_00792	COG0228	four-way junction DNA binding
AUC62_00796	COG0588	phosphoglycerate mutase activity
AUC62_00797	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AUC62_00798	COG0336	Belongs to the RNA methyltransferase TrmD family
AUC62_00799	COG0335	large ribosomal subunit rRNA binding
AUC62_00801	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUC62_00802	COG1942	4-Oxalocrotonate Tautomerase
AUC62_00803	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AUC62_00805	COG1428	Deoxynucleoside kinase
AUC62_00806	COG1970	mechanosensitive ion channel activity
AUC62_00807	COG0561	phosphatase activity
AUC62_00820	COG3853	Toxic anion resistance protein (TelA)
AUC62_00821	COG1393	Belongs to the ArsC family
AUC62_00822	COG4862	establishment of competence for transformation
AUC62_00823	COG2723	6-phospho-beta-galactosidase activity
AUC62_00824	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUC62_00825	COG1447	Phosphotransferase system cellobiose-specific component IIA
AUC62_00826	COG2723	6-phospho-beta-galactosidase activity
AUC62_00827	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUC62_00829	COG1164	Oligoendopeptidase f
AUC62_00830	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AUC62_00833	COG1609	Transcriptional regulator
AUC62_00834	COG0006	proline dipeptidase activity
AUC62_00848	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AUC62_00849	COG3425	synthase
AUC62_00852	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUC62_00853	COG0124	histidyl-tRNA synthetase
AUC62_00854	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AUC62_00856	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUC62_00857	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AUC62_00858	COG1610	YqeY-like protein
AUC62_00859	COG1702	phosphate starvation-inducible protein PhoH
AUC62_00860	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AUC62_00861	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AUC62_00862	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AUC62_00863	COG1381	Involved in DNA repair and RecF pathway recombination
AUC62_00866	COG0752	glycyl-tRNA synthetase alpha subunit
AUC62_00867	COG0751	glycine-tRNA ligase activity
AUC62_00871	COG2706	6-phosphogluconolactonase activity
AUC62_00872	COG0628	permease
AUC62_00874	COG1674	ftsk spoiiie
AUC62_00876	COG4152	abc transporter atp-binding protein
AUC62_00877	COG1668	transmembrane transport
AUC62_00880	COG0322	excinuclease ABC activity
AUC62_00881	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AUC62_00882	COG1739	Uncharacterized protein family UPF0029
AUC62_00886	COG0516	GMP reductase activity
AUC62_00886	COG0517	IMP dehydrogenase activity
AUC62_00887	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AUC62_00888	COG0632	four-way junction helicase activity
AUC62_00889	COG2255	four-way junction helicase activity
AUC62_00890	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AUC62_00897	COG0343	queuine tRNA-ribosyltransferase activity
AUC62_00898	COG1862	Preprotein translocase
AUC62_00899	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AUC62_00900	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AUC62_00901	COG0513	Belongs to the DEAD box helicase family
AUC62_00903	COG1929	Belongs to the glycerate kinase type-1 family
AUC62_00904	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AUC62_00908	COG3906	Belongs to the UPF0473 family
AUC62_00910	COG2333	competence protein COMEC
AUC62_00910	COG0658	competence protein
AUC62_00911	COG1466	dna polymerase III delta subunit
AUC62_00912	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AUC62_00913	COG0268	Binds directly to 16S ribosomal RNA
AUC62_00918	COG0544	peptidyl-prolyl cis-trans isomerase activity
AUC62_00919	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AUC62_00920	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AUC62_00924	COG1193	negative regulation of DNA recombination
AUC62_00928	COG3118	belongs to the thioredoxin family
AUC62_00929	COG0187	DNA topoisomerase II activity
AUC62_00930	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AUC62_00931	COG3527	Alpha-acetolactate decarboxylase
AUC62_00933	COG1473	amidohydrolase
AUC62_00936	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AUC62_00940	COG1434	Gram-negative-bacterium-type cell wall biogenesis
AUC62_00941	COG3201	nicotinamide mononucleotide transporter
AUC62_00949	COG0277	FAD linked oxidase domain protein
AUC62_00950	COG0277	FAD linked oxidase domain protein
AUC62_00951	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AUC62_00953	COG0604	alcohol dehydrogenase
AUC62_00953	COG3321	synthase
AUC62_00957	COG2801	Transposase and inactivated derivatives
AUC62_00966	COG2801	Transposase and inactivated derivatives
AUC62_00971	COG0277	FAD linked oxidase domain protein
AUC62_00972	COG0436	Aminotransferase
AUC62_00975	COG1464	Belongs to the NlpA lipoprotein family
AUC62_00978	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
AUC62_00979	COG0351	phosphomethylpyrimidine kinase
AUC62_00980	COG0352	thiamine-phosphate diphosphorylase activity
AUC62_00985	COG1028	Short-chain dehydrogenase reductase Sdr
AUC62_00987	COG1940	carbohydrate kinase activity
AUC62_01004	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AUC62_01005	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AUC62_01008	COG2357	RelA SpoT domain protein
AUC62_01009	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AUC62_01010	COG0564	pseudouridine synthase activity
AUC62_01011	COG2239	Acts as a magnesium transporter
AUC62_01012	COG2814	Major facilitator Superfamily
AUC62_01017	COG0488	(ABC) transporter
AUC62_01024	COG0583	DNA-binding transcription factor activity
AUC62_01026	COG0656	L-ascorbic acid biosynthetic process
AUC62_01027	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AUC62_01029	COG1846	Transcriptional regulator
AUC62_01040	COG0384	phenazine biosynthesis protein PhzF
AUC62_01042	COG1621	beta-fructofuranosidase activity
AUC62_01043	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AUC62_01044	COG0287	Prephenate dehydrogenase
AUC62_01046	COG0738	Major facilitator superfamily
AUC62_01047	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AUC62_01054	COG1304	FMN binding
AUC62_01057	COG0779	Required for maturation of 30S ribosomal subunits
AUC62_01058	COG0195	Participates in both transcription termination and antitermination
AUC62_01059	COG2740	Nucleic-acid-binding protein implicated in transcription termination
AUC62_01061	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AUC62_01062	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AUC62_01063	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AUC62_01064	COG1252	NADH dehydrogenase
AUC62_01066	COG0196	riboflavin kinase activity
AUC62_01068	COG3142	Participates in the control of copper homeostasis
AUC62_01071	COG2270	Major facilitator Superfamily
AUC62_01072	COG1307	EDD domain protein, DegV family
AUC62_01073	COG1307	EDD domain protein, DegV family
AUC62_01074	COG2755	lipolytic protein G-D-S-L family
AUC62_01076	COG4479	Belongs to the UPF0346 family
AUC62_01078	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AUC62_01079	COG0758	DNA mediated transformation
AUC62_01080	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AUC62_01081	COG4974	Belongs to the 'phage' integrase family
AUC62_01083	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AUC62_01084	COG1227	inorganic diphosphatase activity
AUC62_01087	COG3448	diguanylate cyclase activity
AUC62_01087	COG4175	Glycine betaine
AUC62_01090	COG0446	pyridine nucleotide-disulphide oxidoreductase
AUC62_01091	COG1464	Belongs to the NlpA lipoprotein family
AUC62_01092	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AUC62_01093	COG1597	lipid kinase activity
AUC62_01095	COG1011	Hydrolase
AUC62_01102	COG0242	peptide deformylase activity
AUC62_01103	COG4476	Belongs to the UPF0223 family
AUC62_01104	COG0483	inositol monophosphate 1-phosphatase activity
AUC62_01106	COG0772	Belongs to the SEDS family
AUC62_01107	COG4471	UPF0298 protein
AUC62_01108	COG0742	ribosomal rna small subunit methyltransferase
AUC62_01109	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AUC62_01110	COG3480	Lon protease (S16) C-terminal proteolytic domain
AUC62_01111	COG0477	Major facilitator Superfamily
AUC62_01113	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
AUC62_01114	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AUC62_01115	COG0358	DNA primase activity
AUC62_01116	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AUC62_01122	COG0745	RESPONSE REGULATOR receiver
AUC62_01123	COG5002	protein histidine kinase activity
AUC62_01124	COG0572	uridine kinase
AUC62_01125	COG1363	Peptidase, m42
AUC62_01126	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUC62_01128	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AUC62_01129	COG0670	Belongs to the BI1 family
AUC62_01130	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AUC62_01130	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AUC62_01131	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AUC62_01132	COG0237	dephospho-CoA kinase activity
AUC62_01134	COG1484	DNA-dependent DNA replication
AUC62_01137	COG0745	RESPONSE REGULATOR receiver
AUC62_01138	COG5002	protein histidine kinase activity
AUC62_01140	COG3942	CHAP domain
AUC62_01140	COG1705	Flagellar rod assembly protein muramidase FlgJ
AUC62_01142	COG0531	amino acid
AUC62_01145	COG0706	membrane insertase activity
AUC62_01146	COG1028	Short-chain dehydrogenase reductase Sdr
AUC62_01147	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUC62_01149	COG1304	FMN binding
AUC62_01153	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AUC62_01153	COG1199	ATP-dependent helicase activity
AUC62_01155	COG0017	Asparaginyl-tRNA synthetase
AUC62_01156	COG3935	DnaD domain protein
AUC62_01158	COG3331	DNA recombination
AUC62_01159	COG4474	Belongs to the UPF0398 family
AUC62_01160	COG3599	regulation of cell shape
AUC62_01162	COG0116	Belongs to the methyltransferase superfamily
AUC62_01164	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AUC62_01168	COG0556	nucleotide-excision repair
AUC62_01170	COG0439	Biotin carboxylase
AUC62_01171	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AUC62_01172	COG0825	malonyl-CoA metabolic process
AUC62_01173	COG3104	oligopeptide transport
AUC62_01174	COG0363	glucosamine-6-phosphate deaminase activity
AUC62_01176	COG0537	adenosine 5'-monophosphoramidase activity
AUC62_01177	COG1131	(ABC) transporter
AUC62_01179	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AUC62_01180	COG1719	4-vinyl reductase, 4VR
AUC62_01181	COG1397	ADP-ribosylglycohydrolase
AUC62_01186	COG0446	pyridine nucleotide-disulphide oxidoreductase
AUC62_01187	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
AUC62_01188	COG1349	DNA-binding transcription factor activity
AUC62_01189	COG1105	Belongs to the carbohydrate kinase PfkB family
AUC62_01190	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AUC62_01190	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AUC62_01190	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUC62_01192	COG1609	Transcriptional regulator
AUC62_01194	COG0306	phosphate transporter
AUC62_01196	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
AUC62_01198	COG2723	6-phospho-beta-galactosidase activity
AUC62_01202	COG0531	amino acid
AUC62_01204	COG0481	GTPase activity
AUC62_01210	COG1028	Short-chain dehydrogenase reductase Sdr
AUC62_01211	COG4708	membrane
AUC62_01213	COG0531	amino acid
AUC62_01214	COG4221	oxidoreductase activity
AUC62_01215	COG0583	DNA-binding transcription factor activity
AUC62_01216	COG0281	malic enzyme
AUC62_01218	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AUC62_01222	COG1136	(ABC) transporter
AUC62_01223	COG0577	efflux transmembrane transporter activity
AUC62_01227	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AUC62_01228	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AUC62_01232	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AUC62_01234	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AUC62_01235	COG2384	SAM-dependent methyltransferase
AUC62_01236	COG0071	Belongs to the small heat shock protein (HSP20) family
AUC62_01237	COG0457	Tetratricopeptide repeat
AUC62_01246	COG0419	ATPase involved in DNA repair
AUC62_01247	COG0420	3'-5' exonuclease activity
AUC62_01249	COG2807	transmembrane transport
AUC62_01250	COG4720	Psort location CytoplasmicMembrane, score
AUC62_01251	COG0351	phosphomethylpyrimidine kinase
AUC62_01253	COG1160	GTP binding
AUC62_01254	COG0539	negative regulation of cytoplasmic translation
AUC62_01255	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AUC62_01257	COG0514	ATP-dependent DNA helicase (RecQ)
AUC62_01259	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
AUC62_01262	COG1187	pseudouridine synthase activity
AUC62_01263	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AUC62_01264	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AUC62_01267	COG2996	Protein conserved in bacteria
AUC62_01269	COG0475	glutathione-regulated potassium exporter activity
AUC62_01271	COG1490	D-aminoacyl-tRNA deacylase activity
AUC62_01272	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AUC62_01273	COG0587	DNA-directed DNA polymerase activity
AUC62_01275	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AUC62_01276	COG0488	(ABC) transporter
AUC62_01277	COG0617	tRNA 3'-terminal CCA addition
AUC62_01281	COG1266	CAAX protease self-immunity
AUC62_01282	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AUC62_01284	COG0004	ammonium transporteR
AUC62_01286	COG5263	repeat protein
AUC62_01286	COG0366	Alpha amylase catalytic
AUC62_01287	COG1316	TRANSCRIPTIONal
AUC62_01290	COG1216	Glycosyl transferase, family 2
AUC62_01293	COG1216	Glycosyl transferase, family 2
AUC62_01295	COG0438	transferase activity, transferring glycosyl groups
AUC62_01296	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AUC62_01297	COG0489	protein tyrosine kinase activity
AUC62_01300	COG0233	cytoplasmic translational termination
AUC62_01302	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AUC62_01303	COG0052	Belongs to the universal ribosomal protein uS2 family
AUC62_01304	COG2827	Endonuclease containing a URI domain
AUC62_01305	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AUC62_01306	COG0204	Acyl-transferase
AUC62_01307	COG3883	PFAM NLP P60 protein
AUC62_01307	COG0791	NLP P60 protein
AUC62_01310	COG3763	UPF0154 protein
AUC62_01311	COG4224	UPF0291 protein
AUC62_01312	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AUC62_01316	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AUC62_01316	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AUC62_01317	COG1234	tRNA 3'-trailer cleavage
AUC62_01320	COG0484	heat shock protein binding
AUC62_01321	COG0443	Heat shock 70 kDa protein
AUC62_01323	COG1420	regulation of RNA biosynthetic process
AUC62_01329	COG1216	Glycosyl transferase, family 2
AUC62_01331	COG0463	Glycosyl transferase, family 2
AUC62_01333	COG1705	Flagellar rod assembly protein muramidase FlgJ
AUC62_01336	COG0562	UDP-galactopyranose mutase
AUC62_01341	COG0024	Methionine aminopeptidase
AUC62_01346	COG2801	Transposase and inactivated derivatives
AUC62_01356	COG2309	aminopeptidase activity
AUC62_01359	COG0564	pseudouridine synthase activity
AUC62_01360	COG1278	Cold shock
AUC62_01362	COG2814	Major facilitator Superfamily
AUC62_01363	COG0741	lytic transglycosylase activity
AUC62_01364	COG1072	(Pantothenic acid kinase))
AUC62_01365	COG3973	AAA domain
AUC62_01367	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AUC62_01368	COG1058	Belongs to the CinA family
AUC62_01368	COG1546	Belongs to the CinA family
AUC62_01369	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AUC62_01370	COG1426	Protein conserved in bacteria
AUC62_01371	COG0612	Peptidase, M16
AUC62_01372	COG0612	Peptidase, M16
AUC62_01375	COG0028	Belongs to the TPP enzyme family
AUC62_01379	COG4717	serine-type aminopeptidase activity
AUC62_01382	COG3679	Belongs to the UPF0342 family
AUC62_01383	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AUC62_01384	COG1438	arginine binding
AUC62_01389	COG1959	2 iron, 2 sulfur cluster binding
AUC62_01393	COG0018	arginyl-trna synthetase
AUC62_01396	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AUC62_01398	COG1121	(ABC) transporter
AUC62_01402	COG1597	lipid kinase activity
AUC62_01403	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AUC62_01404	COG0154	amidase activity
AUC62_01405	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AUC62_01406	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
AUC62_01406	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AUC62_01408	COG2936	dipeptidyl-peptidase activity
AUC62_01411	COG1695	Transcriptional regulator
AUC62_01413	COG1914	H( )-stimulated, divalent metal cation uptake system
AUC62_01417	COG0667	Aldo Keto reductase
AUC62_01418	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AUC62_01419	COG4721	ABC-type cobalt transport system, permease component
AUC62_01420	COG1122	ATPase activity
AUC62_01423	COG0758	DNA mediated transformation
AUC62_01426	COG0710	3-dehydroquinate dehydratase activity
AUC62_01427	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AUC62_01428	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AUC62_01429	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AUC62_01430	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AUC62_01431	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AUC62_01432	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AUC62_01435	COG4684	Psort location CytoplasmicMembrane, score
AUC62_01436	COG0436	Aminotransferase
AUC62_01441	COG2801	Transposase and inactivated derivatives
AUC62_01444	COG1783	phage Terminase large subunit
AUC62_01475	COG1396	sequence-specific DNA binding
AUC62_01482	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AUC62_01483	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AUC62_01484	COG0436	Aminotransferase
AUC62_01485	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AUC62_01486	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AUC62_01488	COG2171	N-acyltransferase activity
AUC62_01490	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AUC62_01491	COG0527	aspartate kinase activity
AUC62_01493	COG1609	Transcriptional regulator
AUC62_01494	COG0083	homoserine kinase activity
AUC62_01497	COG1321	iron dependent repressor
AUC62_01498	COG3764	Sortase (surface protein transpeptidase)
AUC62_01502	COG0513	Belongs to the DEAD box helicase family
AUC62_01503	COG0673	inositol 2-dehydrogenase activity
AUC62_01504	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AUC62_01506	COG0501	Belongs to the peptidase M48B family
AUC62_01507	COG1704	LemA family
AUC62_01509	COG4115	mRNA cleavage
AUC62_01510	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AUC62_01513	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AUC62_01515	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AUC62_01516	COG0439	Biotin carboxylase
AUC62_01519	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AUC62_01520	COG1028	Short-chain dehydrogenase reductase Sdr
AUC62_01521	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AUC62_01522	COG2070	2-Nitropropane dioxygenase
AUC62_01523	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUC62_01524	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUC62_01525	COG1846	Transcriptional regulator
AUC62_01526	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AUC62_01528	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AUC62_01529	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AUC62_01531	COG0505	Belongs to the CarA family
AUC62_01533	COG0564	pseudouridine synthase activity
AUC62_01535	COG0328	RNA-DNA hybrid ribonuclease activity
AUC62_01537	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AUC62_01538	COG1113	amino acid transport
AUC62_01544	COG0656	L-ascorbic acid biosynthetic process
AUC62_01546	COG1454	alcohol dehydrogenase
AUC62_01546	COG1012	belongs to the aldehyde dehydrogenase family
AUC62_01547	COG0105	UTP biosynthetic process
AUC62_01549	COG0583	DNA-binding transcription factor activity
AUC62_01550	COG0126	phosphoglycerate kinase activity
AUC62_01560	COG0588	phosphoglycerate mutase activity
AUC62_01562	COG3716	PTS system mannose fructose sorbose family IID component
AUC62_01563	COG3715	PTS system
AUC62_01566	COG1397	ADP-ribosylglycohydrolase
AUC62_01578	COG1368	sulfuric ester hydrolase activity
AUC62_01581	COG0438	transferase activity, transferring glycosyl groups
AUC62_01582	COG0438	transferase activity, transferring glycosyl groups
AUC62_01583	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AUC62_01584	COG0284	orotidine-5'-phosphate decarboxylase activity
AUC62_01585	COG0167	dihydroorotate dehydrogenase activity
AUC62_01586	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AUC62_01587	COG0505	Belongs to the CarA family
AUC62_01588	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AUC62_01589	COG0540	Belongs to the ATCase OTCase family
AUC62_01594	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AUC62_01595	COG4856	YbbR-like protein
AUC62_01598	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AUC62_01601	COG0802	atpase or kinase
AUC62_01602	COG0280	phosphate acetyltransferase
AUC62_01603	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AUC62_01605	COG2076	Multidrug Resistance protein
AUC62_01606	COG2076	Multidrug Resistance protein
AUC62_01607	COG1126	abc transporter atp-binding protein
AUC62_01608	COG0765	amino acid transport
AUC62_01609	COG2814	Major facilitator Superfamily
AUC62_01612	COG0557	exoribonuclease II activity
AUC62_01615	COG0154	amidase activity
AUC62_01619	COG0149	triose-phosphate isomerase activity
AUC62_01620	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AUC62_01621	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUC62_01623	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUC62_01624	COG0492	ferredoxin-NADP+ reductase activity
AUC62_01629	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AUC62_01630	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AUC62_01631	COG1950	PFAM Membrane protein of
AUC62_01633	COG0589	response to stress
AUC62_01635	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AUC62_01637	COG1177	transmembrane transport
AUC62_01638	COG1176	ABC-type spermidine putrescine transport system, permease component I
AUC62_01639	COG3842	ATPase activity
AUC62_01641	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AUC62_01642	COG0049	tRNA binding
AUC62_01643	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AUC62_01645	COG4608	Belongs to the ABC transporter superfamily
AUC62_01646	COG0444	Belongs to the ABC transporter superfamily
AUC62_01647	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUC62_01648	COG0601	transmembrane transport
AUC62_01650	COG0460	homoserine dehydrogenase
AUC62_01651	COG0626	cystathionine gamma-synthase activity
AUC62_01652	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
AUC62_01655	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AUC62_01656	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AUC62_01659	COG1302	Protein conserved in bacteria
AUC62_01660	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AUC62_01662	COG2017	converts alpha-aldose to the beta-anomer
AUC62_01664	COG4975	Glucose uptake
AUC62_01665	COG5002	protein histidine kinase activity
AUC62_01665	COG3850	Histidine kinase
AUC62_01666	COG0745	RESPONSE REGULATOR receiver
AUC62_01667	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AUC62_01668	COG0402	S-adenosylhomocysteine deaminase activity
AUC62_01669	COG0673	inositol 2-dehydrogenase activity
AUC62_01670	COG0741	lytic transglycosylase activity
AUC62_01674	COG0668	transmembrane transport
AUC62_01676	COG1126	abc transporter atp-binding protein
AUC62_01677	COG0765	amino acid transport
AUC62_01685	COG0516	GMP reductase activity
AUC62_01699	COG2801	Transposase and inactivated derivatives
AUC62_01702	COG0494	nUDIX hydrolase
AUC62_01709	COG0738	Major facilitator superfamily
AUC62_01710	COG1869	D-ribose catabolic process
AUC62_01711	COG1609	Transcriptional regulator
AUC62_01715	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AUC62_01718	COG1609	Transcriptional regulator
AUC62_01723	COG2223	nitrite transmembrane transporter activity
AUC62_01725	COG0318	PFAM AMP-dependent synthetase and ligase
AUC62_01727	COG1116	anion transmembrane transporter activity
AUC62_01728	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AUC62_01730	COG0285	dihydrofolate synthase activity
AUC62_01731	COG0302	gtp cyclohydrolase
AUC62_01732	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AUC62_01732	COG0302	gtp cyclohydrolase
AUC62_01742	COG0561	phosphatase activity
AUC62_01745	COG0823	Involved in the tonB-independent uptake of proteins
AUC62_01745	COG1506	peptidase
AUC62_01745	COG4946	Tricorn protease homolog
AUC62_01746	COG1464	Belongs to the NlpA lipoprotein family
AUC62_01748	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AUC62_01749	COG0800	Aldolase
AUC62_01750	COG1904	glucuronate isomerase
AUC62_01751	COG1312	Catalyzes the dehydration of D-mannonate
AUC62_01752	COG0246	Mannitol dehydrogenase
AUC62_01755	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AUC62_01758	COG1609	Transcriptional regulator
AUC62_01764	COG0577	efflux transmembrane transporter activity
AUC62_01765	COG1136	(ABC) transporter
AUC62_01766	COG3759	membrane
AUC62_01771	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AUC62_01772	COG2235	arginine
AUC62_01774	COG2217	Heavy metal translocating P-type atpase
AUC62_01784	COG0438	transferase activity, transferring glycosyl groups
AUC62_01793	COG2814	Major facilitator Superfamily
AUC62_01794	COG2217	Heavy metal translocating P-type atpase
AUC62_01798	COG1309	transcriptional regulator
AUC62_01802	COG3711	transcriptional antiterminator
AUC62_01803	COG2723	6-phospho-beta-galactosidase activity
AUC62_01804	COG1940	carbohydrate kinase activity
AUC62_01809	COG2183	response to ionizing radiation
AUC62_01812	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AUC62_01813	COG1040	competence protein
AUC62_01814	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
AUC62_01815	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AUC62_01830	COG2176	DNA-directed DNA polymerase activity
AUC62_01831	COG0442	prolyl-tRNA aminoacylation
AUC62_01832	COG0750	zinc metalloprotease
AUC62_01833	COG4589	Belongs to the CDS family
AUC62_01834	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AUC62_01835	COG0561	phosphatase activity
AUC62_01836	COG2246	polysaccharide biosynthetic process
AUC62_01841	COG1811	Na channel or pump
AUC62_01842	COG1979	alcohol dehydrogenase
AUC62_01844	COG1174	glycine betaine transport
AUC62_01846	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AUC62_01848	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AUC62_01849	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AUC62_01849	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AUC62_01850	COG0307	riboflavin synthase, alpha
AUC62_01852	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AUC62_01852	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AUC62_01853	COG2076	Multidrug Resistance protein
AUC62_01854	COG2076	Multidrug Resistance protein
AUC62_01856	COG1435	thymidine kinase activity
AUC62_01859	COG1307	EDD domain protein, DegV family
AUC62_01860	COG0656	L-ascorbic acid biosynthetic process
AUC62_01861	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AUC62_01862	COG2814	Major facilitator Superfamily
AUC62_01865	COG1228	amidohydrolase
AUC62_01866	COG4166	transmembrane transport
AUC62_01867	COG0604	alcohol dehydrogenase
AUC62_01877	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AUC62_01879	COG2252	PERMEase
AUC62_01881	COG0352	thiamine-phosphate diphosphorylase activity
AUC62_01882	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
AUC62_01884	COG2814	Major facilitator Superfamily
AUC62_01885	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AUC62_01889	COG1136	(ABC) transporter
AUC62_01889	COG0577	efflux transmembrane transporter activity
AUC62_01891	COG0561	phosphatase activity
AUC62_01892	COG2169	Transcriptional regulator
AUC62_01892	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AUC62_01893	COG0561	phosphatase activity
AUC62_01897	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AUC62_01898	COG0772	Belongs to the SEDS family
AUC62_01900	COG1077	Cell shape determining protein MreB Mrl
AUC62_01901	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AUC62_01906	COG0446	pyridine nucleotide-disulphide oxidoreductase
AUC62_01908	COG0640	Transcriptional regulator
AUC62_01909	COG0628	permease
AUC62_01910	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUC62_01914	COG0386	Belongs to the glutathione peroxidase family
AUC62_01915	COG0588	phosphoglycerate mutase activity
AUC62_01918	COG0492	ferredoxin-NADP+ reductase activity
AUC62_01921	COG1744	ABC transporter substrate-binding protein PnrA-like
AUC62_01924	COG2832	Protein of unknown function (DUF454)
AUC62_01929	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUC62_01931	COG2814	Major facilitator Superfamily
AUC62_01932	COG0305	Participates in initiation and elongation during chromosome replication
AUC62_01933	COG0359	binds to the 23S rRNA
AUC62_01935	COG4608	Belongs to the ABC transporter superfamily
AUC62_01936	COG0444	Belongs to the ABC transporter superfamily
AUC62_01937	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUC62_01938	COG0601	transmembrane transport
AUC62_01939	COG4166	transmembrane transport
AUC62_01940	COG0765	amino acid transport
AUC62_01941	COG0765	amino acid transport
AUC62_01942	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUC62_01943	COG1126	abc transporter atp-binding protein
AUC62_01946	COG0194	GDP metabolic process
AUC62_01947	COG1268	BioY protein
AUC62_01948	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AUC62_01948	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AUC62_01953	COG2211	Major facilitator Superfamily
AUC62_01954	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AUC62_01957	COG3973	AAA domain
AUC62_01961	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
AUC62_01963	COG1696	Membrane protein involved in D-alanine export
AUC62_01967	COG2337	Toxic component of a toxin-antitoxin (TA) module
AUC62_01970	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AUC62_01971	COG0504	CTP synthase activity
AUC62_01973	COG3343	RNA polymerase activity
AUC62_01974	COG0561	phosphatase activity
AUC62_01975	COG1078	dGTPase activity
AUC62_01977	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AUC62_01978	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AUC62_01982	COG0745	RESPONSE REGULATOR receiver
AUC62_01988	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AUC62_01989	COG0629	single-stranded DNA binding
AUC62_01990	COG0360	Binds together with S18 to 16S ribosomal RNA
AUC62_01993	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AUC62_01995	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AUC62_01996	COG1051	belongs to the nudix hydrolase family
AUC62_01999	COG2814	Major facilitator Superfamily
AUC62_02000	COG1064	alcohol dehydrogenase
AUC62_02001	COG1074	ATP-dependent DNA helicase activity
AUC62_02002	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
AUC62_02005	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUC62_02006	COG0531	amino acid
AUC62_02008	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AUC62_02010	COG1902	pentaerythritol trinitrate reductase activity
AUC62_02011	COG0626	cystathionine gamma-synthase activity
AUC62_02015	COG2244	polysaccharide biosynthetic process
AUC62_02017	COG0438	transferase activity, transferring glycosyl groups
AUC62_02018	COG0495	leucyl-tRNA aminoacylation
AUC62_02019	COG0671	phosphoesterase, PA-phosphatase related
AUC62_02021	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AUC62_02026	COG2723	6-phospho-beta-galactosidase activity
AUC62_02030	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AUC62_02032	COG2801	Transposase and inactivated derivatives
AUC62_02034	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AUC62_02036	COG0024	Methionine aminopeptidase
AUC62_02038	COG1316	TRANSCRIPTIONal
AUC62_02040	COG2205	protein histidine kinase activity
AUC62_02041	COG0745	RESPONSE REGULATOR receiver
AUC62_02042	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AUC62_02045	COG2207	Transcriptional regulator
AUC62_02049	COG0308	aminopeptidase N
AUC62_02050	COG0833	amino acid
AUC62_02051	COG2040	homocysteine
AUC62_02052	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUC62_02053	COG0542	response to heat
AUC62_02056	COG0395	ABC-type sugar transport system, permease component
AUC62_02057	COG1175	transmembrane transport
AUC62_02058	COG3842	ATPase activity
AUC62_02080	COG0438	transferase activity, transferring glycosyl groups
AUC62_02086	COG2084	Dehydrogenase
AUC62_02087	COG1028	Short-chain dehydrogenase reductase Sdr
AUC62_02089	COG1620	l-lactate permease
AUC62_02090	COG4989	oxidoreductase activity
AUC62_02091	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AUC62_02092	COG2233	PERMEase
AUC62_02095	COG1956	GAF domain-containing protein
AUC62_02098	COG1132	(ABC) transporter
AUC62_02099	COG1132	(ABC) transporter
AUC62_02100	COG1132	(ABC) transporter
AUC62_02101	COG0747	negative chemotaxis
AUC62_02102	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUC62_02103	COG0601	transmembrane transport
AUC62_02104	COG4608	Belongs to the ABC transporter superfamily
AUC62_02105	COG0444	Belongs to the ABC transporter superfamily
AUC62_02106	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
AUC62_02107	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AUC62_02108	COG2190	(PTS) system
AUC62_02108	COG2211	Major facilitator Superfamily
AUC62_02112	COG0436	Aminotransferase
AUC62_02114	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUC62_02115	COG2723	6-phospho-beta-galactosidase activity
AUC62_02116	COG2723	6-phospho-beta-galactosidase activity
AUC62_02117	COG1447	Phosphotransferase system cellobiose-specific component IIA
AUC62_02118	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUC62_02119	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AUC62_02122	COG1216	Glycosyl transferase, family 2
AUC62_02125	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AUC62_02134	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
AUC62_02135	COG1737	Transcriptional regulator
AUC62_02137	COG0656	L-ascorbic acid biosynthetic process
AUC62_02138	COG2261	transglycosylase associated protein
AUC62_02151	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AUC62_02152	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AUC62_02155	COG0037	tRNA processing
AUC62_02157	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AUC62_02158	COG2244	polysaccharide biosynthetic process
AUC62_02159	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AUC62_02160	COG0193	aminoacyl-tRNA hydrolase activity
AUC62_02162	COG0058	SHG alpha-glucan phosphorylase activity
AUC62_02163	COG0297	glycogen (starch) synthase activity
AUC62_02164	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AUC62_02166	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AUC62_02168	COG1511	domain protein
AUC62_02168	COG1511	domain protein
AUC62_02169	COG1309	transcriptional regulator
AUC62_02172	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUC62_02173	COG0477	Major facilitator Superfamily
AUC62_02176	COG0667	Aldo Keto reductase
AUC62_02178	COG2115	Belongs to the xylose isomerase family
AUC62_02180	COG2211	Major facilitator Superfamily
AUC62_02181	COG3507	Belongs to the glycosyl hydrolase 43 family
AUC62_02186	COG2818	Glycosylase
AUC62_02187	COG1968	undecaprenyl-diphosphatase activity
AUC62_02190	COG1695	Transcriptional regulator
AUC62_02191	COG1983	PspC domain protein
AUC62_02192	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AUC62_02193	COG0737	Belongs to the 5'-nucleotidase family
AUC62_02196	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AUC62_02198	COG2723	6-phospho-beta-galactosidase activity
AUC62_02199	COG2723	6-phospho-beta-galactosidase activity
AUC62_02200	COG1263	PTS System
AUC62_02200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUC62_02201	COG1316	TRANSCRIPTIONal
AUC62_02202	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AUC62_02203	COG2131	deaminase
AUC62_02204	COG4466	Protein conserved in bacteria
AUC62_02205	COG1253	flavin adenine dinucleotide binding
AUC62_02206	COG1253	flavin adenine dinucleotide binding
AUC62_02207	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AUC62_02208	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
AUC62_02209	COG0084	hydrolase, TatD family'
AUC62_02211	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUC62_02211	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUC62_02224	COG1250	3-hydroxyacyl-CoA dehydrogenase
AUC62_02225	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AUC62_02227	COG2801	Transposase and inactivated derivatives
AUC62_02228	COG2910	NAD(P)H-binding
AUC62_02229	COG1733	regulation of RNA biosynthetic process
AUC62_02230	COG2801	Transposase and inactivated derivatives
AUC62_02232	COG1573	uracil-dna glycosylase
AUC62_02233	COG2801	Transposase and inactivated derivatives
AUC62_02242	COG0783	Belongs to the Dps family
AUC62_02243	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein