WKK_00035 SM00100 Cyclic nucleotide-monophosphate binding domain WKK_00085 SM00257 Lysin motif WKK_00085 SM00641 Glycosyl hydrolases family 25 WKK_00150 SM00829 Enoylreductase WKK_00160 SM00342 helix_turn_helix, arabinose operon control protein WKK_00220 SM00957 SecA DEAD-like domain WKK_00220 SM00958 SecA preprotein cross-linking domain WKK_00280 SM00838 Elongation factor G C-terminus WKK_00300 SM00382 ATPases associated with a variety of cellular activities WKK_00345 SM00562 WKK_00345 WKK_00355 SM00028 Tetratricopeptide repeats WKK_00380 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs WKK_00380 SM00474 3'-5' exonuclease WKK_00380 SM00475 5'-3' exonuclease WKK_00380 SM00482 DNA polymerase A domain WKK_00390 SM00382 ATPases associated with a variety of cellular activities WKK_00400 SM00829 Enoylreductase WKK_00405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WKK_00405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WKK_00405 SM00493 WKK_00405 WKK_00410 SM01240 WKK_00410 WKK_00430 SM00062 Bacterial periplasmic substrate-binding proteins WKK_00470 SM00838 Elongation factor G C-terminus WKK_00505 SM00849 Metallo-beta-lactamase superfamily WKK_00515 SM01131 WKK_00515 WKK_00520 SM00434 DNA Topoisomerase IV WKK_00525 SM00387 Histidine kinase-like ATPases WKK_00525 SM00433 TopoisomeraseII WKK_00540 SM00465 GIY-YIG type nucleases (URI domain) WKK_00545 SM00855 Phosphoglycerate mutase family WKK_00570 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_00585 SM00382 ATPases associated with a variety of cellular activities WKK_00585 SM00962 SRP54-type protein, GTPase domain WKK_00585 SM00963 SRP54-type protein, helical bundle domain WKK_00595 SM00382 ATPases associated with a variety of cellular activities WKK_00595 SM00962 SRP54-type protein, GTPase domain WKK_00595 SM00963 SRP54-type protein, helical bundle domain WKK_00600 SM00358 Double-stranded RNA binding motif WKK_00600 SM00535 Ribonuclease III family WKK_00615 SM00487 DEAD-like helicases superfamily WKK_00615 SM00490 helicase superfamily c-terminal domain WKK_00625 SM00836 DALR anticodon binding domain WKK_00625 SM01016 Arginyl tRNA synthetase N terminal dom WKK_00660 SM01120 WKK_00660 WKK_00660 SM01121 WKK_00660 WKK_00675 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain WKK_00690 SM00220 Serine/Threonine protein kinases, catalytic domain WKK_00690 SM00740 WKK_00690 WKK_00695 SM00331 Sigma factor PP2C-like phosphatases WKK_00695 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain WKK_00710 SM00487 DEAD-like helicases superfamily WKK_00710 SM00490 helicase superfamily c-terminal domain WKK_00775 SM00487 DEAD-like helicases superfamily WKK_00775 SM00490 helicase superfamily c-terminal domain WKK_00790 SM01323 WKK_00790 WKK_00805 SM00382 ATPases associated with a variety of cellular activities WKK_00810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WKK_00860 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_00870 SM00387 Histidine kinase-like ATPases WKK_00870 SM00388 His Kinase A (phosphoacceptor) domain WKK_00875 SM00448 cheY-homologous receiver domain WKK_00875 SM00862 Transcriptional regulatory protein, C terminal WKK_00905 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain WKK_00905 SM01232 WKK_00905 WKK_00915 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WKK_00915 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WKK_00915 SM00493 WKK_00915 WKK_01035 SM00226 Low molecular weight phosphatase family WKK_01115 SM00530 Helix-turn-helix XRE-family like proteins WKK_01155 SM00354 helix_turn _helix lactose operon repressor WKK_01185 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_01200 SM00363 S4 RNA-binding domain WKK_01215 SM00864 Tubulin/FtsZ family, GTPase domain WKK_01215 SM00865 Tubulin/FtsZ family, C-terminal domain WKK_01220 SM00842 Cell division protein FtsA WKK_01245 SM00740 WKK_01245 WKK_01345 SM00342 helix_turn_helix, arabinose operon control protein WKK_01395 SM00838 Elongation factor G C-terminus WKK_01410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_01445 SM00382 ATPases associated with a variety of cellular activities WKK_01455 SM01387 WKK_01455 WKK_01470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WKK_01500 SM00732 Likely ribonuclease with RNase H fold. WKK_01510 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WKK_01520 SM00116 Domain in cystathionine beta-synthase and other proteins. WKK_01520 SM00924 MgtE intracellular N domain WKK_01535 SM00954 Region found in RelA / SpoT proteins WKK_01555 SM01409 WKK_01555 WKK_01560 SM00072 Guanylate kinase homologues. WKK_01575 SM00363 S4 RNA-binding domain WKK_01600 SM00487 DEAD-like helicases superfamily WKK_01600 SM00490 helicase superfamily c-terminal domain WKK_01640 SM00116 Domain in cystathionine beta-synthase and other proteins. WKK_01640 SM00382 ATPases associated with a variety of cellular activities WKK_01665 SM00382 ATPases associated with a variety of cellular activities WKK_01680 SM00226 Low molecular weight phosphatase family WKK_01705 SM01007 Class II Aldolase and Adducin N-terminal domain WKK_01725 SM00345 helix_turn_helix gluconate operon transcriptional repressor WKK_01730 SM00052 Putative diguanylate phosphodiesterase WKK_01730 SM00267 diguanylate cyclase WKK_01755 SM00382 ATPases associated with a variety of cellular activities WKK_01785 SM00257 Lysin motif WKK_01805 SM00257 Lysin motif WKK_01970 SM00479 WKK_01970 WKK_01990 SM00986 Uracil DNA glycosylase superfamily WKK_01990 SM00987 UreE urease accessory protein, C-terminal domain WKK_02025 SM00382 ATPases associated with a variety of cellular activities WKK_02075 SM00422 helix_turn_helix, mercury resistance WKK_02100 SM00382 ATPases associated with a variety of cellular activities WKK_02140 SM00267 diguanylate cyclase WKK_02155 SM00062 Bacterial periplasmic substrate-binding proteins WKK_02155 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. WKK_02160 SM00382 ATPases associated with a variety of cellular activities WKK_02165 SM00072 Guanylate kinase homologues. WKK_02175 SM00382 ATPases associated with a variety of cellular activities WKK_02180 SM00382 ATPases associated with a variety of cellular activities WKK_02185 SM00382 ATPases associated with a variety of cellular activities WKK_02195 SM00855 Phosphoglycerate mutase family WKK_02220 SM00354 helix_turn _helix lactose operon repressor WKK_02300 SM01038 Beta galactosidase small chain WKK_02310 SM00855 Phosphoglycerate mutase family WKK_02345 SM00967 RNA 2'-O ribose methyltransferase substrate binding WKK_02355 SM00937 WKK_02355 WKK_02360 SM00957 SecA DEAD-like domain WKK_02360 SM00958 SecA preprotein cross-linking domain WKK_02385 SM01005 Alanine racemase, C-terminal domain WKK_02390 SM00487 DEAD-like helicases superfamily WKK_02390 SM00490 helicase superfamily c-terminal domain WKK_02470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_02480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WKK_02485 SM00849 Metallo-beta-lactamase superfamily WKK_02500 SM00091 PAS domain WKK_02500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WKK_02500 SM00387 Histidine kinase-like ATPases WKK_02500 SM00388 His Kinase A (phosphoacceptor) domain WKK_02505 SM00448 cheY-homologous receiver domain WKK_02505 SM00862 Transcriptional regulatory protein, C terminal WKK_02525 SM01400 WKK_02525 WKK_02580 SM00829 Enoylreductase WKK_02590 SM00662 RNA polymerases D WKK_02610 SM00316 Ribosomal protein S1-like RNA-binding domain WKK_02660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WKK_02665 SM01374 WKK_02665 WKK_02685 SM00322 K homology RNA-binding domain WKK_02700 SM01382 WKK_02700 WKK_02700 SM01383 WKK_02700 WKK_02720 SM01403 WKK_02720 WKK_02795 SM00857 Resolvase, N terminal domain WKK_02870 SM00382 ATPases associated with a variety of cellular activities WKK_02925 SM00937 WKK_02925 WKK_02960 SM00530 Helix-turn-helix XRE-family like proteins WKK_02975 SM01350 WKK_02975 WKK_03005 SM00014 Acid phosphatase homologues WKK_03040 SM00850 LytTr DNA-binding domain WKK_03055 SM00382 ATPases associated with a variety of cellular activities WKK_03070 SM00448 cheY-homologous receiver domain WKK_03075 SM00387 Histidine kinase-like ATPases WKK_03130 SM00382 ATPases associated with a variety of cellular activities WKK_03140 SM00344 helix_turn_helix ASNC type WKK_03145 SM00829 Enoylreductase WKK_03165 SM00649 Ribosomal protein L11/L12 WKK_03170 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. WKK_03170 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WKK_03190 SM00967 RNA 2'-O ribose methyltransferase substrate binding WKK_03195 SM00535 Ribonuclease III family WKK_03200 SM00840 WKK_03200 WKK_03225 SM00382 ATPases associated with a variety of cellular activities WKK_03270 SM00345 helix_turn_helix gluconate operon transcriptional repressor WKK_03270 SM00866 WKK_03270 WKK_03300 SM00382 ATPases associated with a variety of cellular activities WKK_03310 SM00382 ATPases associated with a variety of cellular activities WKK_03320 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_03340 SM00422 helix_turn_helix, mercury resistance WKK_03355 SM00387 Histidine kinase-like ATPases WKK_03355 SM00388 His Kinase A (phosphoacceptor) domain WKK_03360 SM00448 cheY-homologous receiver domain WKK_03360 SM00862 Transcriptional regulatory protein, C terminal WKK_03380 SM00470 ParB-like nuclease domain WKK_03440 SM00422 helix_turn_helix, mercury resistance WKK_03485 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_03560 SM00382 ATPases associated with a variety of cellular activities WKK_03565 SM00530 Helix-turn-helix XRE-family like proteins WKK_03595 SM00100 Cyclic nucleotide-monophosphate binding domain WKK_03610 SM00530 Helix-turn-helix XRE-family like proteins WKK_03655 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WKK_03655 SM00450 Rhodanese Homology Domain WKK_03660 SM00419 helix_turn_helix, cAMP Regulatory protein WKK_03715 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_03720 SM00829 Enoylreductase WKK_03735 SM00422 helix_turn_helix, mercury resistance WKK_03755 SM00829 Enoylreductase WKK_03765 SM00382 ATPases associated with a variety of cellular activities WKK_03770 SM00422 helix_turn_helix, mercury resistance WKK_03780 SM00844 GA module WKK_03785 SM00248 ankyrin repeats WKK_03855 SM00382 ATPases associated with a variety of cellular activities WKK_03855 SM00760 Bacterial dnaA protein helix-turn-helix domain WKK_03860 SM00480 DNA polymerase III beta subunit WKK_03875 SM00387 Histidine kinase-like ATPases WKK_03875 SM00433 TopoisomeraseII WKK_03880 SM00434 DNA Topoisomerase IV WKK_03890 SM00422 helix_turn_helix, mercury resistance WKK_03915 SM00493 WKK_03915 WKK_03920 SM00650 Ribosomal RNA adenine dimethylases WKK_03925 SM00116 Domain in cystathionine beta-synthase and other proteins. WKK_04020 SM00047 Lysozyme subfamily 2 WKK_04055 SM00870 WKK_04055 WKK_04065 SM00448 cheY-homologous receiver domain WKK_04065 SM00862 Transcriptional regulatory protein, C terminal WKK_04070 SM00387 Histidine kinase-like ATPases WKK_04070 SM00388 His Kinase A (phosphoacceptor) domain WKK_04095 SM00116 Domain in cystathionine beta-synthase and other proteins. WKK_04105 SM00487 DEAD-like helicases superfamily WKK_04105 SM00490 helicase superfamily c-terminal domain WKK_04105 SM00982 WKK_04105 WKK_04105 SM01058 CarD-like/TRCF domain WKK_04115 SM00363 S4 RNA-binding domain WKK_04135 SM00382 ATPases associated with a variety of cellular activities WKK_04155 SM00354 helix_turn _helix lactose operon repressor WKK_04190 SM01350 WKK_04190 WKK_04210 SM00382 ATPases associated with a variety of cellular activities WKK_04210 SM01086 C-terminal, D2-small domain, of ClpB protein WKK_04220 SM00663 RNA polymerase I subunit A N-terminus WKK_04235 SM01133 WKK_04235 WKK_04245 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain WKK_04260 SM00244 prohibitin homologues WKK_04265 SM00829 Enoylreductase WKK_04295 SM00382 ATPases associated with a variety of cellular activities WKK_04300 SM00382 ATPases associated with a variety of cellular activities WKK_04315 SM00382 ATPases associated with a variety of cellular activities WKK_04320 SM00493 WKK_04320 WKK_04415 SM00829 Enoylreductase WKK_04440 SM00829 Enoylreductase WKK_04460 SM00342 helix_turn_helix, arabinose operon control protein WKK_04510 SM00382 ATPases associated with a variety of cellular activities WKK_04590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WKK_04615 SM00382 ATPases associated with a variety of cellular activities WKK_04615 SM01086 C-terminal, D2-small domain, of ClpB protein WKK_04630 SM00382 ATPases associated with a variety of cellular activities WKK_04635 SM00670 Large family of predicted nucleotide-binding domains WKK_04650 SM00873 B3/4 domain WKK_04650 SM00874 tRNA synthetase B5 domain WKK_04650 SM00896 Ferredoxin-fold anticodon binding domain WKK_04690 SM00257 Lysin motif WKK_04700 SM00450 Rhodanese Homology Domain WKK_04715 SM00422 helix_turn_helix, mercury resistance WKK_04720 SM01230 WKK_04720 WKK_04755 SM00382 ATPases associated with a variety of cellular activities WKK_04775 SM00345 helix_turn_helix gluconate operon transcriptional repressor WKK_04775 SM00866 WKK_04775 WKK_04780 SM00363 S4 RNA-binding domain WKK_04780 SM01390 WKK_04780 WKK_04795 SM00788 Adenylosuccinate synthetase WKK_04840 SM00479 WKK_04840 WKK_04840 SM00481 DNA polymerase alpha chain like domain WKK_04845 SM00487 DEAD-like helicases superfamily WKK_04845 SM00490 helicase superfamily c-terminal domain WKK_04900 SM00382 ATPases associated with a variety of cellular activities WKK_04905 SM00382 ATPases associated with a variety of cellular activities WKK_04935 SM00316 Ribosomal protein S1-like RNA-binding domain WKK_04935 SM00955 WKK_04935 WKK_04965 SM00357 Cold shock protein domain WKK_04970 SM00831 Cation transporter/ATPase, N-terminus WKK_04980 SM00316 Ribosomal protein S1-like RNA-binding domain WKK_04980 SM00732 Likely ribonuclease with RNase H fold. WKK_05000 SM00322 K homology RNA-binding domain WKK_05000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_05030 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_05040 SM00873 B3/4 domain WKK_05065 SM00862 Transcriptional regulatory protein, C terminal WKK_05085 SM00841 Elongation factor P, C-terminal WKK_05085 SM01185 WKK_05085 WKK_05130 SM00838 Elongation factor G C-terminus WKK_05130 SM00889 Elongation factor G, domain IV WKK_05135 SM00382 ATPases associated with a variety of cellular activities WKK_05215 SM01192 WKK_05215 WKK_05215 SM01193 WKK_05215 WKK_05220 SM00892 DNA/RNA non-specific endonuclease WKK_05230 SM00530 Helix-turn-helix XRE-family like proteins WKK_05240 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WKK_05250 SM00257 Lysin motif WKK_05265 SM01103 WKK_05265 WKK_05275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_05300 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WKK_05300 SM00534 ATPase domain of DNA mismatch repair MUTS family WKK_05305 SM00881 CoA binding domain WKK_05310 SM00382 ATPases associated with a variety of cellular activities WKK_05390 SM00530 Helix-turn-helix XRE-family like proteins WKK_05435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_05440 SM00883 Chaperonin 10 Kd subunit WKK_05460 SM00853 MutL C terminal dimerisation domain WKK_05460 SM01340 WKK_05460 WKK_05475 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WKK_05485 SM00382 ATPases associated with a variety of cellular activities WKK_05495 SM01400 WKK_05495 WKK_05525 SM00845 GatB domain WKK_05530 SM00046 Diacylglycerol kinase catalytic domain (presumed) WKK_05555 SM00316 Ribosomal protein S1-like RNA-binding domain WKK_05570 SM00530 Helix-turn-helix XRE-family like proteins WKK_05575 SM00047 Lysozyme subfamily 2 WKK_05590 SM00357 Cold shock protein domain WKK_05640 SM00382 ATPases associated with a variety of cellular activities WKK_05640 SM00843 WKK_05640 WKK_05660 SM00849 Metallo-beta-lactamase superfamily WKK_05680 SM00382 ATPases associated with a variety of cellular activities WKK_05680 SM00994 ClpX C4-type zinc finger WKK_05680 SM01086 C-terminal, D2-small domain, of ClpB protein WKK_05700 SM00463 Small MutS-related domain WKK_05700 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WKK_05700 SM00534 ATPase domain of DNA mismatch repair MUTS family WKK_05725 SM00287 Bacterial SH3 domain homologues WKK_05725 SM00646 WKK_05725 WKK_05785 SM00904 Riboflavin kinase WKK_05795 SM00382 ATPases associated with a variety of cellular activities WKK_05820 SM00155 Phospholipase D. Active site motifs. WKK_05850 SM00382 ATPases associated with a variety of cellular activities WKK_05880 SM01207 WKK_05880 WKK_05910 SM00563 Phosphate acyltransferases WKK_05980 SM00998 Adenylosuccinate lyase C-terminus WKK_05985 SM00855 Phosphoglycerate mutase family WKK_05990 SM00028 Tetratricopeptide repeats WKK_06055 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_06080 SM00382 ATPases associated with a variety of cellular activities WKK_06085 SM00062 Bacterial periplasmic substrate-binding proteins WKK_06115 SM00981 WKK_06115 WKK_06125 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WKK_06125 SM00292 breast cancer carboxy-terminal domain WKK_06125 SM00532 Ligase N family WKK_06135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_06140 SM00347 helix_turn_helix multiple antibiotic resistance protein WKK_06145 SM00382 ATPases associated with a variety of cellular activities WKK_06150 SM00487 DEAD-like helicases superfamily WKK_06150 SM00490 helicase superfamily c-terminal domain WKK_06160 SM00363 S4 RNA-binding domain WKK_06170 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WKK_06175 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WKK_06225 SM00479 WKK_06225 WKK_06225 SM00487 DEAD-like helicases superfamily WKK_06225 SM00491 WKK_06225 WKK_06240 SM00382 ATPases associated with a variety of cellular activities WKK_06255 SM00481 DNA polymerase alpha chain like domain WKK_06260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WKK_06260 SM00954 Region found in RelA / SpoT proteins WKK_06280 SM00363 S4 RNA-binding domain WKK_06290 SM00487 DEAD-like helicases superfamily WKK_06290 SM00490 helicase superfamily c-terminal domain WKK_06305 SM00316 Ribosomal protein S1-like RNA-binding domain WKK_06315 SM00411 bacterial (prokaryotic) histone like domain WKK_06340 SM00861 Transketolase, pyrimidine binding domain WKK_06400 SM00267 diguanylate cyclase WKK_06420 SM00400 zinc finger WKK_06420 SM00493 WKK_06420 WKK_06445 SM00271 DnaJ molecular chaperone homology domain WKK_06470 SM00448 cheY-homologous receiver domain WKK_06470 SM00862 Transcriptional regulatory protein, C terminal WKK_06475 SM00091 PAS domain WKK_06475 SM00387 Histidine kinase-like ATPases WKK_06475 SM00388 His Kinase A (phosphoacceptor) domain WKK_06480 SM00382 ATPases associated with a variety of cellular activities WKK_06525 SM00052 Putative diguanylate phosphodiesterase WKK_06530 SM00052 Putative diguanylate phosphodiesterase WKK_06535 SM00267 diguanylate cyclase WKK_06580 SM00919 Malic enzyme, NAD binding domain WKK_06580 SM01274 WKK_06580 WKK_06615 SM00957 SecA DEAD-like domain WKK_06615 SM00958 SecA preprotein cross-linking domain WKK_06675 SM00100 Cyclic nucleotide-monophosphate binding domain WKK_06852 SM00857 Resolvase, N terminal domain WKK_06897 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WKK_06897 SM00450 Rhodanese Homology Domain WKK_06957 SM00829 Enoylreductase