locus-tag class description FY536_00100 PF00403 Heavy-metal-associated domain FY536_00115 PF04262 Glutamate-cysteine ligase FY536_00115 PF18419 ATP-grasp-like domain FY536_00115 PF02655 ATP-grasp domain FY536_00135 PF00344 SecY translocase FY536_00145 PF16929 Accessory Sec system GspB-transporter FY536_00155 PF07516 SecA Wing and Scaffold domain FY536_00155 PF01043 SecA preprotein cross-linking domain FY536_00155 PF07517 SecA DEAD-like domain FY536_00160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY536_00160 PF00205 Thiamine pyrophosphate enzyme, central domain FY536_00160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY536_00165 PF10400 Virulence activator alpha C-term FY536_00165 PF03551 Transcriptional regulator PadR-like family FY536_00170 PF05870 Phenolic acid decarboxylase (PAD) FY536_00175 PF13545 Crp-like helix-turn-helix domain FY536_00210 PF00344 SecY translocase FY536_00215 PF07517 SecA DEAD-like domain FY536_00215 PF01043 SecA preprotein cross-linking domain FY536_00215 PF07516 SecA Wing and Scaffold domain FY536_00230 PF00534 Glycosyl transferases group 1 FY536_00235 PF00860 Permease family FY536_00240 PF00403 Heavy-metal-associated domain FY536_00255 PF13545 Crp-like helix-turn-helix domain FY536_00260 PF01546 Peptidase family M20/M25/M40 FY536_00265 PF03606 C4-dicarboxylate anaerobic carrier FY536_00270 PF07690 Major Facilitator Superfamily FY536_00275 PF00679 Elongation factor G C-terminus FY536_00275 PF00009 Elongation factor Tu GTP binding domain FY536_00275 PF06421 GTP-binding protein LepA C-terminus FY536_00285 PF00440 Bacterial regulatory proteins, tetR family FY536_00295 PF00005 ABC transporter FY536_00300 PF01116 Fructose-bisphosphate aldolase class-II FY536_00305 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) FY536_00310 PF00253 Ribosomal protein S14p/S29e FY536_00315 PF00471 Ribosomal protein L33 FY536_00325 PF07687 Peptidase dimerisation domain FY536_00325 PF01546 Peptidase family M20/M25/M40 FY536_00330 PF01784 NIF3 (NGG1p interacting factor 3) FY536_00335 PF04816 tRNA (adenine(22)-N(1))-methyltransferase FY536_00340 PF00334 Nucleoside diphosphate kinase FY536_00355 PF07690 Major Facilitator Superfamily FY536_00360 PF07155 ECF-type riboflavin transporter, S component FY536_00365 PF08543 Phosphomethylpyrimidine kinase FY536_00370 PF00476 DNA polymerase family A FY536_00370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FY536_00370 PF01367 5'-3' exonuclease, C-terminal SAM fold FY536_00380 PF13732 Domain of unknown function (DUF4162) FY536_00380 PF00005 ABC transporter FY536_00390 PF00107 Zinc-binding dehydrogenase FY536_00390 PF08240 Alcohol dehydrogenase GroES-like domain FY536_00395 PF01131 DNA topoisomerase FY536_00395 PF01751 Toprim domain FY536_00400 PF00478 IMP dehydrogenase / GMP reductase domain FY536_00405 PF02096 60Kd inner membrane protein FY536_00410 PF00403 Heavy-metal-associated domain FY536_00410 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_00410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY536_00415 PF00528 Binding-protein-dependent transport system inner membrane component FY536_00420 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY536_00430 PF05362 Lon protease (S16) C-terminal proteolytic domain FY536_00430 PF13180 PDZ domain FY536_00435 PF01467 Cytidylyltransferase-like FY536_00445 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) FY536_00450 PF01098 Cell cycle protein FY536_00455 PF03144 Elongation factor Tu domain 2 FY536_00455 PF00679 Elongation factor G C-terminus FY536_00455 PF14492 Elongation Factor G, domain II FY536_00455 PF00009 Elongation factor Tu GTP binding domain FY536_00460 PF00459 Inositol monophosphatase family FY536_00465 PF05256 Uncharacterised protein family (UPF0223) FY536_00470 PF01327 Polypeptide deformylase FY536_00480 PF02557 D-alanyl-D-alanine carboxypeptidase FY536_00485 PF07288 Protein of unknown function (DUF1447) FY536_00490 PF00753 Metallo-beta-lactamase superfamily FY536_00490 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FY536_00490 PF17770 Ribonuclease J C-terminal domain FY536_00495 PF00781 Diacylglycerol kinase catalytic domain FY536_00500 PF01368 DHH family FY536_00500 PF02833 DHHA2 domain FY536_00505 PF00521 DNA gyrase/topoisomerase IV, subunit A FY536_00505 PF03989 DNA gyrase C-terminal domain, beta-propeller FY536_00510 PF00986 DNA gyrase B subunit, carboxyl terminus FY536_00510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_00510 PF01751 Toprim domain FY536_00510 PF00204 DNA gyrase B FY536_00515 PF01205 Uncharacterized protein family UPF0029 FY536_00515 PF09186 Domain of unknown function (DUF1949) FY536_00520 PF01926 50S ribosome-binding GTPase FY536_00520 PF01018 GTP1/OBG FY536_00520 PF09269 Domain of unknown function (DUF1967) FY536_00525 PF08459 UvrC Helix-hairpin-helix N-terminal FY536_00525 PF02151 UvrB/uvrC motif FY536_00525 PF01541 GIY-YIG catalytic domain FY536_00530 PF00300 Histidine phosphatase superfamily (branch 1) FY536_00535 PF01746 tRNA (Guanine-1)-methyltransferase FY536_00540 PF01782 RimM N-terminal domain FY536_00540 PF05239 PRC-barrel domain FY536_00555 PF07690 Major Facilitator Superfamily FY536_00560 PF00886 Ribosomal protein S16 FY536_00565 PF00448 SRP54-type protein, GTPase domain FY536_00565 PF02881 SRP54-type protein, helical bundle domain FY536_00565 PF02978 Signal peptide binding domain FY536_00570 PF04297 Putative helix-turn-helix protein, YlxM / p13 like FY536_00575 PF02881 SRP54-type protein, helical bundle domain FY536_00575 PF00448 SRP54-type protein, GTPase domain FY536_00580 PF00035 Double-stranded RNA binding motif FY536_00580 PF14622 Ribonuclease-III-like FY536_00585 PF00550 Phosphopantetheine attachment site FY536_00590 PF02504 Fatty acid synthesis protein FY536_00595 PF00270 DEAD/DEAH box helicase FY536_00595 PF17191 RecG wedge domain FY536_00595 PF00271 Helicase conserved C-terminal domain FY536_00600 PF00860 Permease family FY536_00605 PF03485 Arginyl tRNA synthetase N terminal domain FY536_00605 PF00750 tRNA synthetases class I (R) FY536_00605 PF05746 DALR anticodon binding domain FY536_00615 PF02875 Mur ligase family, glutamate ligase domain FY536_00615 PF08245 Mur ligase middle domain FY536_00625 PF01435 Peptidase family M48 FY536_00630 PF04011 LemA family FY536_00635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY536_00635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY536_00635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY536_00635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY536_00640 PF02734 DAK2 domain FY536_00640 PF13684 Dihydroxyacetone kinase family FY536_00645 PF03780 Asp23 family, cell envelope-related function FY536_00650 PF00830 Ribosomal L28 family FY536_00655 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain FY536_00655 PF04263 Thiamin pyrophosphokinase, catalytic domain FY536_00660 PF00834 Ribulose-phosphate 3 epimerase family FY536_00665 PF03193 RsgA GTPase FY536_00665 PF16745 RsgA N-terminal domain FY536_00670 PF03793 PASTA domain FY536_00670 PF00069 Protein kinase domain FY536_00680 PF01189 16S rRNA methyltransferase RsmB/F FY536_00680 PF01029 NusB family FY536_00685 PF00551 Formyl transferase FY536_00685 PF02911 Formyl transferase, C-terminal domain FY536_00690 PF00271 Helicase conserved C-terminal domain FY536_00690 PF17764 3′ DNA-binding domain (3′BD) FY536_00690 PF18074 Primosomal protein N C-terminal domain FY536_00690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FY536_00690 PF04851 Type III restriction enzyme, res subunit FY536_00695 PF00871 Acetokinase family FY536_00715 PF08334 Type II secretion system (T2SS), protein G FY536_00715 PF07963 Prokaryotic N-terminal methylation motif FY536_00725 PF00437 Type II/IV secretion system protein FY536_00730 PF01709 Transcriptional regulator FY536_00735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY536_00735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY536_00740 PF01361 Tautomerase enzyme FY536_00745 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FY536_00745 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FY536_00750 PF00271 Helicase conserved C-terminal domain FY536_00750 PF00270 DEAD/DEAH box helicase FY536_00755 PF02272 DHHA1 domain FY536_00755 PF01368 DHH family FY536_00760 PF00817 impB/mucB/samB family FY536_00760 PF11799 impB/mucB/samB family C-terminal domain FY536_00765 PF02699 Preprotein translocase subunit FY536_00770 PF01702 Queuine tRNA-ribosyltransferase FY536_00775 PF02547 Queuosine biosynthesis protein FY536_00780 PF05496 Holliday junction DNA helicase RuvB P-loop domain FY536_00780 PF05491 RuvB C-terminal winged helix domain FY536_00780 PF17864 RuvB AAA lid domain FY536_00785 PF07499 RuvA, C-terminal domain FY536_00785 PF01330 RuvA N terminal domain FY536_00790 PF03553 Na+/H+ antiporter family FY536_00795 PF02481 DNA recombination-mediator protein A FY536_00795 PF18255 DNA processing protein A sterile alpha motif domain FY536_00800 PF01351 Ribonuclease HII FY536_00805 PF01926 50S ribosome-binding GTPase FY536_00810 PF06855 YozE SAM-like fold FY536_00825 PF02645 Uncharacterised protein, DegV family COG1307 FY536_00830 PF02645 Uncharacterised protein, DegV family COG1307 FY536_00840 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_00840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY536_00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_00845 PF00512 His Kinase A (phospho-acceptor) domain FY536_00845 PF18719 ArlS sensor domain FY536_00850 PF00072 Response regulator receiver domain FY536_00850 PF00486 Transcriptional regulatory protein, C terminal FY536_00865 PF07319 Primosomal protein DnaI N-terminus FY536_00865 PF01695 IstB-like ATP binding protein FY536_00875 PF01121 Dephospho-CoA kinase FY536_00880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FY536_00880 PF06827 Zinc finger found in FPG and IleRS FY536_00880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FY536_00890 PF01131 DNA topoisomerase FY536_00890 PF01751 Toprim domain FY536_00890 PF01396 Topoisomerase DNA binding C4 zinc finger FY536_00895 PF02390 Putative methyltransferase FY536_00900 PF01230 HIT domain FY536_00910 PF06993 Protein of unknown function (DUF1304) FY536_00915 PF03073 TspO/MBR family FY536_00925 PF00132 Bacterial transferase hexapeptide (six repeats) FY536_00925 PF12464 Maltose acetyltransferase FY536_00925 PF14602 Hexapeptide repeat of succinyl-transferase FY536_00930 PF00106 short chain dehydrogenase FY536_00935 PF03466 LysR substrate binding domain FY536_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_00940 PF04226 Transglycosylase associated protein FY536_00970 PF05532 CsbD-like FY536_00985 PF04226 Transglycosylase associated protein FY536_00995 PF02734 DAK2 domain FY536_00995 PF13684 Dihydroxyacetone kinase family FY536_01000 PF14552 Tautomerase enzyme FY536_01010 PF01451 Low molecular weight phosphotyrosine protein phosphatase FY536_01015 PF08241 Methyltransferase domain FY536_01020 PF08000 Bacterial PH domain FY536_01040 PF13302 Acetyltransferase (GNAT) domain FY536_01110 PF14659 Phage integrase, N-terminal SAM-like domain FY536_01110 PF00589 Phage integrase family FY536_01120 PF00356 Bacterial regulatory proteins, lacI family FY536_01125 PF01321 Creatinase/Prolidase N-terminal domain FY536_01125 PF00557 Metallopeptidase family M24 FY536_01130 PF00268 Ribonucleotide reductase, small chain FY536_01135 PF02867 Ribonucleotide reductase, barrel domain FY536_01135 PF00317 Ribonucleotide reductase, all-alpha domain FY536_01135 PF08343 Ribonucleotide reductase N-terminal FY536_01140 PF00462 Glutaredoxin FY536_01145 PF07972 NrdI Flavodoxin like FY536_01150 PF01047 MarR family FY536_01155 PF00133 tRNA synthetases class I (I, L, M and V) FY536_01155 PF08264 Anticodon-binding domain of tRNA FY536_01155 PF06827 Zinc finger found in FPG and IleRS FY536_01160 PF05103 DivIVA protein FY536_01175 PF04472 Cell division protein SepF FY536_01180 PF00091 Tubulin/FtsZ family, GTPase domain FY536_01180 PF12327 FtsZ family, C-terminal domain FY536_01185 PF02491 SHS2 domain inserted in FTSA FY536_01185 PF11983 Membrane-attachment and polymerisation-promoting switch FY536_01190 PF08478 POTRA domain, FtsQ-type FY536_01190 PF03799 Cell division protein FtsQ FY536_01195 PF03033 Glycosyltransferase family 28 N-terminal domain FY536_01195 PF04101 Glycosyltransferase family 28 C-terminal domain FY536_01200 PF01225 Mur ligase family, catalytic domain FY536_01200 PF08245 Mur ligase middle domain FY536_01200 PF02875 Mur ligase family, glutamate ligase domain FY536_01205 PF00953 Glycosyl transferase family 4 FY536_01205 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FY536_01210 PF03717 Penicillin-binding Protein dimerisation domain FY536_01210 PF00905 Penicillin binding protein transpeptidase domain FY536_01210 PF03793 PASTA domain FY536_01220 PF01795 MraW methylase family FY536_01225 PF02381 MraZ protein, putative antitoxin-like FY536_01235 PF04452 RNA methyltransferase FY536_01245 PF00324 Amino acid permease FY536_01260 PF04085 rod shape-determining protein MreC FY536_01270 PF04002 RadC-like JAB domain FY536_01295 PF02517 CPBP intramembrane metalloprotease FY536_01310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FY536_01315 PF12833 Helix-turn-helix domain FY536_01315 PF02311 AraC-like ligand binding domain FY536_01320 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FY536_01320 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FY536_01325 PF00288 GHMP kinases N terminal domain FY536_01325 PF10509 Galactokinase galactose-binding signature FY536_01325 PF08544 GHMP kinases C terminal FY536_01330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FY536_01360 PF01197 Ribosomal protein L31 FY536_01365 PF00679 Elongation factor G C-terminus FY536_01365 PF00009 Elongation factor Tu GTP binding domain FY536_01365 PF06421 GTP-binding protein LepA C-terminus FY536_01365 PF03144 Elongation factor Tu domain 2 FY536_01370 PF01245 Ribosomal protein L19 FY536_01375 PF03358 NADPH-dependent FMN reductase FY536_01380 PF01966 HD domain FY536_01380 PF01336 OB-fold nucleic acid binding domain FY536_01385 PF13514 AAA domain FY536_01390 PF00149 Calcineurin-like phosphoesterase FY536_01395 PF06133 Control of competence regulator ComK, YlbF/YmcA FY536_01400 PF00912 Transglycosylase FY536_01400 PF00905 Penicillin binding protein transpeptidase domain FY536_01405 PF02863 Arginine repressor, C-terminal domain FY536_01405 PF01316 Arginine repressor, DNA binding domain FY536_01415 PF00005 ABC transporter FY536_01420 PF01649 Ribosomal protein S20 FY536_01425 PF00312 Ribosomal protein S15 FY536_01430 PF06144 DNA polymerase III, delta subunit FY536_01435 PF03772 Competence protein FY536_01435 PF13567 Domain of unknown function (DUF4131) FY536_01435 PF00753 Metallo-beta-lactamase superfamily FY536_01440 PF10531 SLBB domain FY536_01460 PF06949 Protein of unknown function (DUF1292) FY536_01465 PF06949 Protein of unknown function (DUF1292) FY536_01470 PF03652 Holliday junction resolvase FY536_01475 PF06135 IreB regulatory phosphoprotein FY536_01480 PF01411 tRNA synthetases class II (A) FY536_01480 PF02272 DHHA1 domain FY536_01480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY536_01485 PF07690 Major Facilitator Superfamily FY536_01490 PF03448 MgtE intracellular N domain FY536_01490 PF01769 Divalent cation transporter FY536_01490 PF00571 CBS domain FY536_01495 PF00849 RNA pseudouridylate synthase FY536_01500 PF01513 ATP-NAD kinase FY536_01505 PF04607 Region found in RelA / SpoT proteins FY536_01510 PF03275 UDP-galactopyranose mutase FY536_01525 PF01192 RNA polymerase Rpb6 FY536_01530 PF00625 Guanylate kinase FY536_01535 PF13476 AAA domain FY536_01540 PF02863 Arginine repressor, C-terminal domain FY536_01540 PF01316 Arginine repressor, DNA binding domain FY536_01545 PF01479 S4 domain FY536_01545 PF01728 FtsJ-like methyltransferase FY536_01550 PF00348 Polyprenyl synthetase FY536_01555 PF02609 Exonuclease VII small subunit FY536_01560 PF02601 Exonuclease VII, large subunit FY536_01560 PF13742 OB-fold nucleic acid binding domain FY536_01565 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FY536_01565 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FY536_01570 PF00270 DEAD/DEAH box helicase FY536_01570 PF00271 Helicase conserved C-terminal domain FY536_01575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FY536_01580 PF05958 tRNA (Uracil-5-)-methyltransferase FY536_01580 PF01938 TRAM domain FY536_01585 PF02875 Mur ligase family, glutamate ligase domain FY536_01585 PF08245 Mur ligase middle domain FY536_01590 PF00133 tRNA synthetases class I (I, L, M and V) FY536_01590 PF10458 Valyl tRNA synthetase tRNA binding arm FY536_01590 PF08264 Anticodon-binding domain of tRNA FY536_01605 PF00528 Binding-protein-dependent transport system inner membrane component FY536_01610 PF00005 ABC transporter FY536_01610 PF00571 CBS domain FY536_01615 PF00582 Universal stress protein family FY536_01635 PF12002 MgsA AAA+ ATPase C terminal FY536_01635 PF05496 Holliday junction DNA helicase RuvB P-loop domain FY536_01635 PF16193 AAA C-terminal domain FY536_01640 PF16658 Class II release factor RF3, C-terminal domain FY536_01640 PF00009 Elongation factor Tu GTP binding domain FY536_01640 PF03144 Elongation factor Tu domain 2 FY536_01650 PF01451 Low molecular weight phosphotyrosine protein phosphatase FY536_01655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY536_01655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FY536_01660 PF00248 Aldo/keto reductase family FY536_01670 PF11762 L-arabinose isomerase C-terminal domain FY536_01670 PF02610 L-arabinose isomerase FY536_01675 PF00596 Class II Aldolase and Adducin N-terminal domain FY536_01685 PF01306 LacY proton/sugar symporter FY536_01690 PF04616 Glycosyl hydrolases family 43 FY536_01690 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain FY536_01695 PF00392 Bacterial regulatory proteins, gntR family FY536_01700 PF00990 Diguanylate cyclase, GGDEF domain FY536_01720 PF02887 Pyruvate kinase, alpha/beta domain FY536_01720 PF00224 Pyruvate kinase, barrel domain FY536_01720 PF00391 PEP-utilising enzyme, mobile domain FY536_01725 PF00005 ABC transporter FY536_01730 PF02653 Branched-chain amino acid transport system / permease component FY536_01740 PF12822 ECF transporter, substrate-specific component FY536_01750 PF07690 Major Facilitator Superfamily FY536_01760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FY536_01765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FY536_01770 PF01545 Cation efflux family FY536_01780 PF00485 Phosphoribulokinase / Uridine kinase family FY536_01785 PF13538 UvrD-like helicase C-terminal domain FY536_01795 PF03613 PTS system mannose/fructose/sorbose family IID component FY536_01800 PF03609 PTS system sorbose-specific iic component FY536_01805 PF03830 PTS system sorbose subfamily IIB component FY536_01805 PF03610 PTS system fructose IIA component FY536_01825 PF03932 CutC family FY536_01860 PF00728 Glycosyl hydrolase family 20, catalytic domain FY536_01860 PF00746 LPXTG cell wall anchor motif FY536_01860 PF04650 YSIRK type signal peptide FY536_01860 PF07501 G5 domain FY536_01870 PF00535 Glycosyl transferase family 2 FY536_01910 PF00884 Sulfatase FY536_01925 PF13439 Glycosyltransferase Family 4 FY536_01925 PF00534 Glycosyl transferases group 1 FY536_01930 PF00534 Glycosyl transferases group 1 FY536_01930 PF13439 Glycosyltransferase Family 4 FY536_01940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FY536_01940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FY536_01940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FY536_01940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FY536_01945 PF07949 YbbR-like protein FY536_01950 PF02457 DisA bacterial checkpoint controller nucleotide-binding FY536_01955 PF00999 Sodium/hydrogen exchanger family FY536_01960 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FY536_01960 PF01565 FAD binding domain FY536_01965 PF14480 DNA polymerase III polC-type N-terminus I FY536_01965 PF00929 Exonuclease FY536_01965 PF02811 PHP domain FY536_01965 PF14579 Helix-hairpin-helix motif FY536_01965 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY536_01965 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY536_01965 PF11490 DNA polymerase III polC-type N-terminus II FY536_01975 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FY536_01980 PF01515 Phosphate acetyl/butaryl transferase FY536_01985 PF03167 Uracil DNA glycosylase superfamily FY536_01995 PF04024 PspC domain FY536_02005 PF03551 Transcriptional regulator PadR-like family FY536_02010 PF01475 Ferric uptake regulator family FY536_02020 PF03060 Nitronate monooxygenase FY536_02030 PF02595 Glycerate kinase family FY536_02035 PF00557 Metallopeptidase family M24 FY536_02065 PF17866 AAA lid domain FY536_02065 PF00004 ATPase family associated with various cellular activities (AAA) FY536_02085 PF13411 MerR HTH family regulatory protein FY536_02090 PF00248 Aldo/keto reductase family FY536_02100 PF07690 Major Facilitator Superfamily FY536_02110 PF00005 ABC transporter FY536_02115 PF02687 FtsX-like permease family FY536_02135 PF01016 Ribosomal L27 protein FY536_02140 PF00829 Ribosomal prokaryotic L21 protein FY536_02145 PF03796 DnaB-like helicase C terminal domain FY536_02145 PF00772 DnaB-like helicase N terminal domain FY536_02150 PF01281 Ribosomal protein L9, N-terminal domain FY536_02150 PF03948 Ribosomal protein L9, C-terminal domain FY536_02155 PF01368 DHH family FY536_02155 PF02272 DHHA1 domain FY536_02160 PF00528 Binding-protein-dependent transport system inner membrane component FY536_02165 PF00528 Binding-protein-dependent transport system inner membrane component FY536_02170 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY536_02175 PF00005 ABC transporter FY536_02180 PF00625 Guanylate kinase FY536_02185 PF01546 Peptidase family M20/M25/M40 FY536_02190 PF02687 FtsX-like permease family FY536_02190 PF00005 ABC transporter FY536_02190 PF12704 MacB-like periplasmic core domain FY536_02195 PF00005 ABC transporter FY536_02195 PF00664 ABC transporter transmembrane region FY536_02200 PF00664 ABC transporter transmembrane region FY536_02200 PF00005 ABC transporter FY536_02205 PF16360 GTP-binding GTPase Middle Region FY536_02205 PF13167 GTP-binding GTPase N-terminal FY536_02205 PF01926 50S ribosome-binding GTPase FY536_02210 PF00300 Histidine phosphatase superfamily (branch 1) FY536_02220 PF03372 Endonuclease/Exonuclease/phosphatase family FY536_02240 PF14748 Pyrroline-5-carboxylate reductase dimerisation FY536_02240 PF03807 NADP oxidoreductase coenzyme F420-dependent FY536_02245 PF01098 Cell cycle protein FY536_02260 PF01225 Mur ligase family, catalytic domain FY536_02260 PF08245 Mur ligase middle domain FY536_02260 PF02875 Mur ligase family, glutamate ligase domain FY536_02265 PF00149 Calcineurin-like phosphoesterase FY536_02265 PF02872 5'-nucleotidase, C-terminal domain FY536_02275 PF02581 Thiamine monophosphate synthase FY536_02280 PF08543 Phosphomethylpyrimidine kinase FY536_02285 PF02110 Hydroxyethylthiazole kinase family FY536_02300 PF02929 Beta galactosidase small chain FY536_02305 PF00703 Glycosyl hydrolases family 2 FY536_02305 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FY536_02305 PF02837 Glycosyl hydrolases family 2, sugar binding domain FY536_02310 PF00300 Histidine phosphatase superfamily (branch 1) FY536_02315 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_02330 PF00561 alpha/beta hydrolase fold FY536_02335 PF01638 HxlR-like helix-turn-helix FY536_02345 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY536_02345 PF00588 SpoU rRNA Methylase family FY536_02350 PF02388 FemAB family FY536_02355 PF00472 RF-1 domain FY536_02355 PF03462 PCRF domain FY536_02360 PF07516 SecA Wing and Scaffold domain FY536_02360 PF01043 SecA preprotein cross-linking domain FY536_02360 PF07517 SecA DEAD-like domain FY536_02365 PF01256 Carbohydrate kinase FY536_02375 PF00579 tRNA synthetases class I (W and Y) FY536_02380 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system FY536_02385 PF01168 Alanine racemase, N-terminal domain FY536_02385 PF00842 Alanine racemase, C-terminal domain FY536_02390 PF00271 Helicase conserved C-terminal domain FY536_02390 PF00270 DEAD/DEAH box helicase FY536_02395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FY536_02400 PF00117 Glutamine amidotransferase class-I FY536_02400 PF06418 CTP synthase N-terminus FY536_02405 PF05066 HB1, ASXL, restriction endonuclease HTH domain FY536_02410 PF04321 RmlD substrate binding domain FY536_02415 PF16363 GDP-mannose 4,6 dehydratase FY536_02420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FY536_02425 PF00483 Nucleotidyl transferase FY536_02430 PF00535 Glycosyl transferase family 2 FY536_02435 PF00535 Glycosyl transferase family 2 FY536_02455 PF17101 Stealth protein CR1, conserved region 1 FY536_02455 PF11380 Stealth protein CR2, conserved region 2 FY536_02455 PF17102 Stealth protein CR3, conserved region 3 FY536_02460 PF00534 Glycosyl transferases group 1 FY536_02460 PF13439 Glycosyltransferase Family 4 FY536_02465 PF01966 HD domain FY536_02475 PF13180 PDZ domain FY536_02480 PF00753 Metallo-beta-lactamase superfamily FY536_02495 PF00989 PAS fold FY536_02495 PF00512 His Kinase A (phospho-acceptor) domain FY536_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_02495 PF00672 HAMP domain FY536_02500 PF00486 Transcriptional regulatory protein, C terminal FY536_02500 PF00072 Response regulator receiver domain FY536_02505 PF01084 Ribosomal protein S18 FY536_02510 PF00436 Single-strand binding protein family FY536_02515 PF01250 Ribosomal protein S6 FY536_02520 PF14572 Phosphoribosyl synthetase-associated domain FY536_02520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FY536_02525 PF00132 Bacterial transferase hexapeptide (six repeats) FY536_02525 PF12804 MobA-like NTP transferase domain FY536_02530 PF00156 Phosphoribosyl transferase domain FY536_02530 PF09182 Bacterial purine repressor, N-terminal FY536_02535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY536_02535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY536_02540 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FY536_02540 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FY536_02545 PF13361 UvrD-like helicase C-terminal domain FY536_02545 PF00580 UvrD/REP helicase N-terminal domain FY536_02545 PF12705 PD-(D/E)XK nuclease superfamily FY536_02550 PF12705 PD-(D/E)XK nuclease superfamily FY536_02555 PF14437 MafB19-like deaminase FY536_02560 PF05175 Methyltransferase small domain FY536_02565 PF00589 Phage integrase family FY536_02565 PF14659 Phage integrase, N-terminal SAM-like domain FY536_02600 PF00107 Zinc-binding dehydrogenase FY536_02600 PF08240 Alcohol dehydrogenase GroES-like domain FY536_02605 PF01196 Ribosomal protein L17 FY536_02610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FY536_02610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FY536_02610 PF01000 RNA polymerase Rpb3/RpoA insert domain FY536_02615 PF00411 Ribosomal protein S11 FY536_02620 PF00416 Ribosomal protein S13/S18 FY536_02625 PF00444 Ribosomal protein L36 FY536_02630 PF01176 Translation initiation factor 1A / IF-1 FY536_02640 PF00344 SecY translocase FY536_02645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FY536_02650 PF00327 Ribosomal protein L30p/L7e FY536_02655 PF03719 Ribosomal protein S5, C-terminal domain FY536_02655 PF00333 Ribosomal protein S5, N-terminal domain FY536_02660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FY536_02665 PF00347 Ribosomal protein L6 FY536_02670 PF00410 Ribosomal protein S8 FY536_02675 PF00281 Ribosomal protein L5 FY536_02675 PF00673 ribosomal L5P family C-terminus FY536_02680 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FY536_02680 PF00467 KOW motif FY536_02685 PF00238 Ribosomal protein L14p/L23e FY536_02690 PF00366 Ribosomal protein S17 FY536_02695 PF00831 Ribosomal L29 protein FY536_02700 PF00252 Ribosomal protein L16p/L10e FY536_02705 PF00189 Ribosomal protein S3, C-terminal domain FY536_02705 PF07650 KH domain FY536_02710 PF00237 Ribosomal protein L22p/L17e FY536_02715 PF00203 Ribosomal protein S19 FY536_02720 PF03947 Ribosomal Proteins L2, C-terminal domain FY536_02720 PF00181 Ribosomal Proteins L2, RNA binding domain FY536_02725 PF00276 Ribosomal protein L23 FY536_02730 PF00573 Ribosomal protein L4/L1 family FY536_02735 PF00297 Ribosomal protein L3 FY536_02740 PF00338 Ribosomal protein S10p/S20e FY536_02755 PF00534 Glycosyl transferases group 1 FY536_02765 PF13439 Glycosyltransferase Family 4 FY536_02765 PF00534 Glycosyl transferases group 1 FY536_02775 PF03808 Glycosyl transferase WecB/TagA/CpsF family FY536_02780 PF01943 Polysaccharide biosynthesis protein FY536_02800 PF02397 Bacterial sugar transferase FY536_02815 PF02350 UDP-N-acetylglucosamine 2-epimerase FY536_02825 PF00814 Glycoprotease family FY536_02830 PF00583 Acetyltransferase (GNAT) family FY536_02840 PF00814 Glycoprotease family FY536_02855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY536_02855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY536_02860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY536_02860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY536_02870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY536_02870 PF02403 Seryl-tRNA synthetase N-terminal domain FY536_02875 PF01712 Deoxynucleoside kinase FY536_02880 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FY536_02880 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FY536_02885 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY536_02885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY536_02890 PF00231 ATP synthase FY536_02895 PF02874 ATP synthase alpha/beta family, beta-barrel domain FY536_02895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FY536_02895 PF00306 ATP synthase alpha/beta chain, C terminal domain FY536_02900 PF00213 ATP synthase delta (OSCP) subunit FY536_02905 PF00430 ATP synthase B/B' CF(0) FY536_02910 PF00137 ATP synthase subunit C FY536_02915 PF00119 ATP synthase A chain FY536_02925 PF00464 Serine hydroxymethyltransferase FY536_02930 PF01300 Telomere recombination FY536_02930 PF03481 Putative GTP-binding controlling metal-binding FY536_02935 PF05175 Methyltransferase small domain FY536_02935 PF17827 PrmC N-terminal domain FY536_02940 PF00472 RF-1 domain FY536_02940 PF03462 PCRF domain FY536_02945 PF00265 Thymidine kinase FY536_02950 PF07685 CobB/CobQ-like glutamine amidotransferase domain FY536_02955 PF08245 Mur ligase middle domain FY536_02955 PF08353 Domain of unknown function (DUF1727) FY536_02965 PF13520 Amino acid permease FY536_02980 PF08241 Methyltransferase domain FY536_02985 PF13520 Amino acid permease FY536_02990 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FY536_02990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY536_03000 PF14667 Polysaccharide biosynthesis C-terminal domain FY536_03000 PF01943 Polysaccharide biosynthesis protein FY536_03010 PF07943 Penicillin-binding protein 5, C-terminal domain FY536_03010 PF00768 D-alanyl-D-alanine carboxypeptidase FY536_03015 PF08264 Anticodon-binding domain of tRNA FY536_03015 PF13603 Leucyl-tRNA synthetase, Domain 2 FY536_03015 PF09334 tRNA synthetases class I (M) FY536_03015 PF00133 tRNA synthetases class I (I, L, M and V) FY536_03020 PF01569 PAP2 superfamily FY536_03025 PF01795 MraW methylase family FY536_03030 PF05958 tRNA (Uracil-5-)-methyltransferase FY536_03030 PF01938 TRAM domain FY536_03035 PF05525 Branched-chain amino acid transport protein FY536_03040 PF13520 Amino acid permease FY536_03045 PF03577 Peptidase family C69 FY536_03050 PF13520 Amino acid permease FY536_03065 PF01156 Inosine-uridine preferring nucleoside hydrolase FY536_03070 PF00005 ABC transporter FY536_03075 PF02687 FtsX-like permease family FY536_03075 PF12704 MacB-like periplasmic core domain FY536_03080 PF02773 S-adenosylmethionine synthetase, C-terminal domain FY536_03080 PF02772 S-adenosylmethionine synthetase, central domain FY536_03080 PF00438 S-adenosylmethionine synthetase, N-terminal domain FY536_03085 PF08664 YcbB domain FY536_03085 PF00072 Response regulator receiver domain FY536_03090 PF01590 GAF domain FY536_03090 PF00360 Phytochrome region FY536_03090 PF08446 PAS fold FY536_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_03090 PF00512 His Kinase A (phospho-acceptor) domain FY536_03095 PF03606 C4-dicarboxylate anaerobic carrier FY536_03100 PF06800 Sugar transport protein FY536_03105 PF05025 RbsD / FucU transport protein family FY536_03110 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FY536_03110 PF00294 pfkB family carbohydrate kinase FY536_03115 PF03600 Citrate transporter FY536_03130 PF00893 Small Multidrug Resistance protein FY536_03145 PF00571 CBS domain FY536_03145 PF00005 ABC transporter FY536_03150 PF00528 Binding-protein-dependent transport system inner membrane component FY536_03155 PF01037 Lrp/AsnC ligand binding domain FY536_03165 PF00542 Ribosomal protein L7/L12 C-terminal domain FY536_03165 PF16320 Ribosomal protein L7/L12 dimerisation domain FY536_03170 PF00466 Ribosomal protein L10 FY536_03175 PF00687 Ribosomal protein L1p/L10e family FY536_03180 PF00298 Ribosomal protein L11, RNA binding domain FY536_03180 PF03946 Ribosomal protein L11, N-terminal domain FY536_03185 PF02357 Transcription termination factor nusG FY536_03185 PF00467 KOW motif FY536_03195 PF00471 Ribosomal protein L33 FY536_03205 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY536_03205 PF00588 SpoU rRNA Methylase family FY536_03210 PF00636 Ribonuclease III domain FY536_03215 PF09190 DALR domain FY536_03215 PF01406 tRNA synthetases class I (C) catalytic domain FY536_03220 PF02540 NAD synthase FY536_03225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FY536_03225 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain FY536_03225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FY536_03235 PF03180 NLPA lipoprotein FY536_03240 PF09383 NIL domain FY536_03240 PF00005 ABC transporter FY536_03245 PF00528 Binding-protein-dependent transport system inner membrane component FY536_03255 PF01238 Phosphomannose isomerase type I FY536_03270 PF03006 Haemolysin-III related FY536_03275 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase FY536_03275 PF09363 XFP C-terminal domain FY536_03275 PF09364 XFP N-terminal domain FY536_03280 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FY536_03285 PF07702 UTRA domain FY536_03285 PF00392 Bacterial regulatory proteins, gntR family FY536_03290 PF07690 Major Facilitator Superfamily FY536_03310 PF17802 Prealbumin-like fold domain FY536_03310 PF05737 Collagen binding domain FY536_03310 PF05738 Cna protein B-type domain FY536_03315 PF00005 ABC transporter FY536_03315 PF12848 ABC transporter FY536_03320 PF00950 ABC 3 transport family FY536_03325 PF00005 ABC transporter FY536_03335 PF01047 MarR family FY536_03340 PF01757 Acyltransferase family FY536_03350 PF00854 POT family FY536_03355 PF00376 MerR family regulatory protein FY536_03355 PF09278 MerR, DNA binding FY536_03360 PF00106 short chain dehydrogenase FY536_03380 PF00672 HAMP domain FY536_03380 PF00989 PAS fold FY536_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_03380 PF18698 Histidine kinase sensor domain FY536_03380 PF00512 His Kinase A (phospho-acceptor) domain FY536_03385 PF00072 Response regulator receiver domain FY536_03385 PF00486 Transcriptional regulatory protein, C terminal FY536_03395 PF06071 Protein of unknown function (DUF933) FY536_03395 PF01926 50S ribosome-binding GTPase FY536_03400 PF06107 Bacterial protein of unknown function (DUF951) FY536_03405 PF17762 HTH domain found in ParB protein FY536_03405 PF02195 ParB-like nuclease domain FY536_03410 PF13614 AAA domain FY536_03415 PF02527 rRNA small subunit methyltransferase G FY536_03420 PF01207 Dihydrouridine synthase (Dus) FY536_03430 PF07859 alpha/beta hydrolase fold FY536_03440 PF01594 AI-2E family transporter FY536_03445 PF00708 Acylphosphatase FY536_03450 PF01161 Phosphatidylethanolamine-binding protein FY536_03455 PF02909 Tetracyclin repressor-like, C-terminal domain FY536_03455 PF00440 Bacterial regulatory proteins, tetR family FY536_03460 PF00106 short chain dehydrogenase FY536_03465 PF13411 MerR HTH family regulatory protein FY536_03470 PF01938 TRAM domain FY536_03470 PF05958 tRNA (Uracil-5-)-methyltransferase FY536_03475 PF12822 ECF transporter, substrate-specific component FY536_03480 PF02540 NAD synthase FY536_03480 PF00958 GMP synthase C terminal domain FY536_03480 PF00117 Glutamine amidotransferase class-I FY536_03495 PF02082 Transcriptional regulator FY536_03505 PF07690 Major Facilitator Superfamily FY536_03515 PF01546 Peptidase family M20/M25/M40 FY536_03515 PF07687 Peptidase dimerisation domain FY536_03530 PF05368 NmrA-like family FY536_03535 PF00248 Aldo/keto reductase family FY536_03540 PF09335 SNARE associated Golgi protein FY536_03550 PF00075 RNase H FY536_03560 PF02386 Cation transport protein FY536_03565 PF02590 Predicted SPOUT methyltransferase FY536_03590 PF06458 MucBP domain FY536_03600 PF00239 Resolvase, N terminal domain FY536_03600 PF13408 Recombinase zinc beta ribbon domain FY536_03600 PF07508 Recombinase FY536_03630 PF00854 POT family FY536_03660 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_03665 PF00085 Thioredoxin FY536_03670 PF00085 Thioredoxin FY536_03675 PF00085 Thioredoxin FY536_03685 PF13545 Crp-like helix-turn-helix domain FY536_03690 PF00534 Glycosyl transferases group 1 FY536_03710 PF00561 alpha/beta hydrolase fold FY536_03715 PF00248 Aldo/keto reductase family FY536_03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_03725 PF03466 LysR substrate binding domain FY536_03735 PF05737 Collagen binding domain FY536_03735 PF17802 Prealbumin-like fold domain FY536_03735 PF05738 Cna protein B-type domain FY536_03745 PF08240 Alcohol dehydrogenase GroES-like domain FY536_03745 PF00107 Zinc-binding dehydrogenase FY536_03750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FY536_03760 PF13411 MerR HTH family regulatory protein FY536_03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_03765 PF03466 LysR substrate binding domain FY536_03775 PF02308 MgtC family FY536_03780 PF08240 Alcohol dehydrogenase GroES-like domain FY536_03780 PF00107 Zinc-binding dehydrogenase FY536_03790 PF12002 MgsA AAA+ ATPase C terminal FY536_03790 PF00004 ATPase family associated with various cellular activities (AAA) FY536_03790 PF16193 AAA C-terminal domain FY536_03860 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family FY536_03870 PF02627 Carboxymuconolactone decarboxylase family FY536_03880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_03880 PF03466 LysR substrate binding domain FY536_03885 PF01501 Glycosyl transferase family 8 FY536_03890 PF02080 TrkA-C domain FY536_03890 PF02254 TrkA-N domain FY536_03895 PF00324 Amino acid permease FY536_03900 PF10502 Signal peptidase, peptidase S26 FY536_03905 PF02096 60Kd inner membrane protein FY536_03910 PF00825 Ribonuclease P FY536_03915 PF00468 Ribosomal protein L34 FY536_03920 PF00308 Bacterial dnaA protein FY536_03920 PF11638 DnaA N-terminal domain FY536_03920 PF08299 Bacterial dnaA protein helix-turn-helix FY536_03925 PF00712 DNA polymerase III beta subunit, N-terminal domain FY536_03925 PF02767 DNA polymerase III beta subunit, central domain FY536_03925 PF02768 DNA polymerase III beta subunit, C-terminal domain FY536_03935 PF02463 RecF/RecN/SMC N terminal domain FY536_03940 PF00204 DNA gyrase B FY536_03940 PF00986 DNA gyrase B subunit, carboxyl terminus FY536_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_03940 PF01751 Toprim domain FY536_03945 PF03989 DNA gyrase C-terminal domain, beta-propeller FY536_03945 PF00521 DNA gyrase/topoisomerase IV, subunit A FY536_03950 PF00884 Sulfatase FY536_03955 PF13411 MerR HTH family regulatory protein FY536_03960 PF00368 Hydroxymethylglutaryl-coenzyme A reductase FY536_03990 PF08264 Anticodon-binding domain of tRNA FY536_03990 PF09334 tRNA synthetases class I (M) FY536_03990 PF01588 Putative tRNA binding domain FY536_03995 PF01026 TatD related DNase FY536_04000 PF13331 Domain of unknown function (DUF4093) FY536_04000 PF13662 Toprim domain FY536_04005 PF00398 Ribosomal RNA adenine dimethylase FY536_04010 PF00571 CBS domain FY536_04010 PF03471 Transporter associated domain FY536_04010 PF01595 Cyclin M transmembrane N-terminal domain FY536_04015 PF06257 Biofilm formation stimulator VEG FY536_04020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FY536_04025 PF00303 Thymidylate synthase FY536_04030 PF03816 Cell envelope-related transcriptional attenuator domain FY536_04045 PF02673 Bacitracin resistance protein BacA FY536_04060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FY536_04060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FY536_04065 PF13520 Amino acid permease FY536_04070 PF00696 Amino acid kinase family FY536_04090 PF00535 Glycosyl transferase family 2 FY536_04100 PF00535 Glycosyl transferase family 2 FY536_04110 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FY536_04110 PF01476 LysM domain FY536_04120 PF02073 Thermophilic metalloprotease (M29) FY536_04130 PF03853 YjeF-related protein N-terminus FY536_04140 PF00230 Major intrinsic protein FY536_04145 PF04608 Phosphatidylglycerophosphatase A FY536_04150 PF00710 Asparaginase, N-terminal FY536_04150 PF17763 Glutaminase/Asparaginase C-terminal domain FY536_04155 PF02229 Transcriptional Coactivator p15 (PC4) FY536_04160 PF00486 Transcriptional regulatory protein, C terminal FY536_04160 PF00072 Response regulator receiver domain FY536_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_04165 PF00512 His Kinase A (phospho-acceptor) domain FY536_04175 PF00999 Sodium/hydrogen exchanger family FY536_04180 PF00085 Thioredoxin FY536_04195 PF01195 Peptidyl-tRNA hydrolase FY536_04200 PF00271 Helicase conserved C-terminal domain FY536_04200 PF00270 DEAD/DEAH box helicase FY536_04200 PF02559 CarD-like/TRCF domain FY536_04200 PF17757 UvrB interaction domain FY536_04200 PF03461 TRCF domain FY536_04205 PF01943 Polysaccharide biosynthesis protein FY536_04205 PF14667 Polysaccharide biosynthesis C-terminal domain FY536_04210 PF01479 S4 domain FY536_04220 PF01171 PP-loop family FY536_04225 PF00156 Phosphoribosyl transferase domain FY536_04230 PF17862 AAA+ lid domain FY536_04230 PF06480 FtsH Extracellular FY536_04230 PF01434 Peptidase family M41 FY536_04230 PF00004 ATPase family associated with various cellular activities (AAA) FY536_04235 PF01156 Inosine-uridine preferring nucleoside hydrolase FY536_04240 PF01156 Inosine-uridine preferring nucleoside hydrolase FY536_04245 PF07662 Na+ dependent nucleoside transporter C-terminus FY536_04245 PF01773 Na+ dependent nucleoside transporter N-terminus FY536_04250 PF00356 Bacterial regulatory proteins, lacI family FY536_04255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FY536_04260 PF01430 Hsp33 protein FY536_04265 PF01336 OB-fold nucleic acid binding domain FY536_04265 PF00152 tRNA synthetases class II (D, K and N) FY536_04300 PF03577 Peptidase family C69 FY536_04305 PF00324 Amino acid permease FY536_04310 PF01380 SIS domain FY536_04310 PF01418 Helix-turn-helix domain, rpiR family FY536_04315 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FY536_04315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY536_04345 PF05848 CtsR N-terminal HTH domain FY536_04345 PF17727 CtsR C-terminal dimerization domain FY536_04350 PF00004 ATPase family associated with various cellular activities (AAA) FY536_04350 PF07724 AAA domain (Cdc48 subfamily) FY536_04350 PF17871 AAA lid domain FY536_04350 PF02861 Clp amino terminal domain, pathogenicity island component FY536_04350 PF10431 C-terminal, D2-small domain, of ClpB protein FY536_04355 PF04560 RNA polymerase Rpb2, domain 7 FY536_04355 PF00562 RNA polymerase Rpb2, domain 6 FY536_04355 PF10385 RNA polymerase beta subunit external 1 domain FY536_04355 PF04561 RNA polymerase Rpb2, domain 2 FY536_04355 PF04563 RNA polymerase beta subunit FY536_04355 PF04565 RNA polymerase Rpb2, domain 3 FY536_04360 PF05000 RNA polymerase Rpb1, domain 4 FY536_04360 PF04983 RNA polymerase Rpb1, domain 3 FY536_04360 PF04998 RNA polymerase Rpb1, domain 5 FY536_04360 PF00623 RNA polymerase Rpb1, domain 2 FY536_04360 PF04997 RNA polymerase Rpb1, domain 1 FY536_04365 PF08534 Redoxin FY536_04375 PF01791 DeoC/LacD family aldolase FY536_04380 PF01676 Metalloenzyme superfamily FY536_04385 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FY536_04385 PF00591 Glycosyl transferase family, a/b domain FY536_04385 PF02885 Glycosyl transferase family, helical bundle domain FY536_04390 PF01048 Phosphorylase superfamily FY536_04410 PF00156 Phosphoribosyl transferase domain FY536_04415 PF05649 Peptidase family M13 FY536_04415 PF01431 Peptidase family M13 FY536_04420 PF00171 Aldehyde dehydrogenase family FY536_04420 PF00465 Iron-containing alcohol dehydrogenase FY536_04425 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_04430 PF08032 RNA 2'-O ribose methyltransferase substrate binding FY536_04430 PF00588 SpoU rRNA Methylase family FY536_04435 PF00005 ABC transporter FY536_04440 PF00005 ABC transporter FY536_04445 PF02361 Cobalt transport protein FY536_04450 PF01416 tRNA pseudouridine synthase FY536_04460 PF12169 DNA polymerase III subunits gamma and tau domain III FY536_04465 PF02132 RecR protein FY536_04465 PF13662 Toprim domain FY536_04475 PF02223 Thymidylate kinase FY536_04480 PF06153 Cyclic-di-AMP receptor FY536_04485 PF09115 DNA polymerase III, delta subunit, C terminal FY536_04490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FY536_04500 PF16363 GDP-mannose 4,6 dehydratase FY536_04515 PF00248 Aldo/keto reductase family FY536_04520 PF02652 L-lactate permease FY536_04525 PF00534 Glycosyl transferases group 1 FY536_04570 PF00572 Ribosomal protein L13 FY536_04575 PF00380 Ribosomal protein S9/S16 FY536_04590 PF08240 Alcohol dehydrogenase GroES-like domain FY536_04590 PF00107 Zinc-binding dehydrogenase FY536_04595 PF00999 Sodium/hydrogen exchanger family FY536_04600 PF04474 Protein of unknown function (DUF554) FY536_04605 PF03466 LysR substrate binding domain FY536_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_04615 PF00107 Zinc-binding dehydrogenase FY536_04615 PF08240 Alcohol dehydrogenase GroES-like domain FY536_04625 PF00294 pfkB family carbohydrate kinase FY536_04630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FY536_04630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FY536_04635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY536_04635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY536_04640 PF07729 FCD domain FY536_04640 PF00392 Bacterial regulatory proteins, gntR family FY536_04645 PF08125 Mannitol dehydrogenase C-terminal domain FY536_04645 PF01232 Mannitol dehydrogenase Rossmann domain FY536_04650 PF03786 D-mannonate dehydratase (UxuA) FY536_04655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FY536_04655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FY536_04670 PF16257 tagaturonate epimerase FY536_04675 PF02614 Glucuronate isomerase FY536_04685 PF13802 Galactose mutarotase-like FY536_04685 PF01055 Glycosyl hydrolases family 31 FY536_04690 PF17853 GGDEF-like domain FY536_04690 PF12833 Helix-turn-helix domain FY536_04695 PF01554 MatE FY536_04700 PF00083 Sugar (and other) transporter FY536_04705 PF00480 ROK family FY536_04715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY536_04715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY536_04735 PF17760 UvrA interaction domain FY536_04735 PF17755 UvrA DNA-binding domain FY536_04735 PF00005 ABC transporter FY536_04745 PF13520 Amino acid permease FY536_04755 PF01820 D-ala D-ala ligase N-terminus FY536_04755 PF07478 D-ala D-ala ligase C-terminus FY536_04760 PF01566 Natural resistance-associated macrophage protein FY536_04770 PF03668 P-loop ATPase protein family FY536_04775 PF01933 Uncharacterised protein family UPF0052 FY536_04780 PF10298 WhiA N-terminal LAGLIDADG-like domain FY536_04780 PF14527 WhiA LAGLIDADG-like domain FY536_04780 PF02650 WhiA C-terminal HTH domain FY536_04785 PF00574 Clp protease FY536_04800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FY536_04830 PF12464 Maltose acetyltransferase FY536_04830 PF14602 Hexapeptide repeat of succinyl-transferase FY536_04840 PF07724 AAA domain (Cdc48 subfamily) FY536_04840 PF10431 C-terminal, D2-small domain, of ClpB protein FY536_04840 PF00004 ATPase family associated with various cellular activities (AAA) FY536_04840 PF17871 AAA lid domain FY536_04850 PF00692 dUTPase FY536_04855 PF18073 Rubredoxin metal binding domain FY536_04865 PF00749 tRNA synthetases class I (E and Q), catalytic domain FY536_04870 PF01409 tRNA synthetases class II core domain (F) FY536_04870 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FY536_04875 PF03483 B3/4 domain FY536_04875 PF01588 Putative tRNA binding domain FY536_04875 PF03484 tRNA synthetase B5 domain FY536_04875 PF03147 Ferredoxin-fold anticodon binding domain FY536_04875 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FY536_04880 PF02618 YceG-like family FY536_04890 PF03449 Transcription elongation factor, N-terminal FY536_04890 PF01272 Transcription elongation factor, GreA/GreB, C-term FY536_04895 PF03717 Penicillin-binding Protein dimerisation domain FY536_04895 PF00905 Penicillin binding protein transpeptidase domain FY536_04900 PF01812 5-formyltetrahydrofolate cyclo-ligase family FY536_04910 PF00480 ROK family FY536_04915 PF00877 NlpC/P60 family FY536_04940 PF13411 MerR HTH family regulatory protein FY536_04945 PF03951 Glutamine synthetase, beta-Grasp domain FY536_04945 PF00120 Glutamine synthetase, catalytic domain FY536_04965 PF00892 EamA-like transporter family FY536_04970 PF06177 QueT transporter FY536_04985 PF00005 ABC transporter FY536_04995 PF08544 GHMP kinases C terminal FY536_04995 PF00288 GHMP kinases N terminal domain FY536_05000 PF01979 Amidohydrolase family FY536_05005 PF07702 UTRA domain FY536_05005 PF00392 Bacterial regulatory proteins, gntR family FY536_05010 PF01479 S4 domain FY536_05010 PF00163 Ribosomal protein S4/S9 N-terminal domain FY536_05020 PF00860 Permease family FY536_05025 PF00709 Adenylosuccinate synthetase FY536_05030 PF00156 Phosphoribosyl transferase domain FY536_05040 PF04138 GtrA-like protein FY536_05050 PF01255 Putative undecaprenyl diphosphate synthase FY536_05060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY536_05060 PF04073 Aminoacyl-tRNA editing domain FY536_05060 PF03129 Anticodon binding domain FY536_05070 PF00929 Exonuclease FY536_05070 PF14480 DNA polymerase III polC-type N-terminus I FY536_05070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY536_05070 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY536_05070 PF11490 DNA polymerase III polC-type N-terminus II FY536_05070 PF02811 PHP domain FY536_05070 PF14579 Helix-hairpin-helix motif FY536_05095 PF04851 Type III restriction enzyme, res subunit FY536_05095 PF00271 Helicase conserved C-terminal domain FY536_05105 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus FY536_05105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FY536_05110 PF00557 Metallopeptidase family M24 FY536_05110 PF01321 Creatinase/Prolidase N-terminal domain FY536_05125 PF06265 Protein of unknown function (DUF1027) FY536_05130 PF13344 Haloacid dehalogenase-like hydrolase FY536_05135 PF12849 PBP superfamily domain FY536_05140 PF00528 Binding-protein-dependent transport system inner membrane component FY536_05145 PF00528 Binding-protein-dependent transport system inner membrane component FY536_05150 PF00005 ABC transporter FY536_05155 PF00005 ABC transporter FY536_05160 PF01895 PhoU domain FY536_05170 PF06160 Septation ring formation regulator, EzrA FY536_05175 PF00579 tRNA synthetases class I (W and Y) FY536_05175 PF01479 S4 domain FY536_05185 PF00575 S1 RNA binding domain FY536_05185 PF08206 Ribonuclease B OB domain FY536_05185 PF00773 RNB domain FY536_05185 PF17876 Cold shock domain FY536_05190 PF01668 SmpB protein FY536_05195 PF00854 POT family FY536_05200 PF13673 Acetyltransferase (GNAT) domain FY536_05210 PF00313 'Cold-shock' DNA-binding domain FY536_05215 PF00689 Cation transporting ATPase, C-terminus FY536_05215 PF00690 Cation transporter/ATPase, N-terminus FY536_05225 PF16921 Tex protein YqgF-like domain FY536_05225 PF17674 HHH domain FY536_05225 PF00575 S1 RNA binding domain FY536_05225 PF09371 Tex-like protein N-terminal domain FY536_05235 PF00689 Cation transporting ATPase, C-terminus FY536_05235 PF00690 Cation transporter/ATPase, N-terminus FY536_05255 PF01966 HD domain FY536_05255 PF00013 KH domain FY536_05255 PF12072 Domain of unknown function (DUF3552) FY536_05260 PF05223 NTF2-like N-terminal transpeptidase domain FY536_05260 PF00905 Penicillin binding protein transpeptidase domain FY536_05260 PF03717 Penicillin-binding Protein dimerisation domain FY536_05275 PF00293 NUDIX domain FY536_05285 PF00893 Small Multidrug Resistance protein FY536_05290 PF01047 MarR family FY536_05295 PF00583 Acetyltransferase (GNAT) family FY536_05305 PF00860 Permease family FY536_05315 PF01594 AI-2E family transporter FY536_05320 PF07969 Amidohydrolase family FY536_05325 PF00486 Transcriptional regulatory protein, C terminal FY536_05325 PF00072 Response regulator receiver domain FY536_05330 PF01263 Aldose 1-epimerase FY536_05335 PF00342 Phosphoglucose isomerase FY536_05345 PF01132 Elongation factor P (EF-P) OB domain FY536_05345 PF09285 Elongation factor P, C-terminal FY536_05345 PF08207 Elongation factor P (EF-P) KOW-like domain FY536_05350 PF03780 Asp23 family, cell envelope-related function FY536_05355 PF01029 NusB family FY536_05360 PF00707 Translation initiation factor IF-3, C-terminal domain FY536_05360 PF05198 Translation initiation factor IF-3, N-terminal domain FY536_05365 PF01632 Ribosomal protein L35 FY536_05370 PF12949 HeH/LEM domain FY536_05370 PF00453 Ribosomal protein L20 FY536_05380 PF00164 Ribosomal protein S12/S23 FY536_05385 PF00177 Ribosomal protein S7p/S5e FY536_05390 PF03144 Elongation factor Tu domain 2 FY536_05390 PF03764 Elongation factor G, domain IV FY536_05390 PF14492 Elongation Factor G, domain II FY536_05390 PF00679 Elongation factor G C-terminus FY536_05390 PF00009 Elongation factor Tu GTP binding domain FY536_05395 PF00005 ABC transporter FY536_05395 PF08402 TOBE domain FY536_05400 PF00528 Binding-protein-dependent transport system inner membrane component FY536_05405 PF00528 Binding-protein-dependent transport system inner membrane component FY536_05410 PF13416 Bacterial extracellular solute-binding protein FY536_05415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FY536_05425 PF07690 Major Facilitator Superfamily FY536_05435 PF07475 HPr Serine kinase C-terminal domain FY536_05435 PF02603 HPr Serine kinase N terminus FY536_05440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FY536_05440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FY536_05445 PF00483 Nucleotidyl transferase FY536_05450 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_05460 PF00381 PTS HPr component phosphorylation site FY536_05465 PF02896 PEP-utilising enzyme, TIM barrel domain FY536_05465 PF00391 PEP-utilising enzyme, mobile domain FY536_05465 PF05524 PEP-utilising enzyme, N-terminal FY536_05470 PF00121 Triosephosphate isomerase FY536_05475 PF00113 Enolase, C-terminal TIM barrel domain FY536_05475 PF03952 Enolase, N-terminal domain FY536_05480 PF01223 DNA/RNA non-specific endonuclease FY536_05505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FY536_05505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FY536_05510 PF00162 Phosphoglycerate kinase FY536_05525 PF01926 50S ribosome-binding GTPase FY536_05535 PF01467 Cytidylyltransferase-like FY536_05540 PF01966 HD domain FY536_05550 PF01209 ubiE/COQ5 methyltransferase family FY536_05555 PF05636 HIGH Nucleotidyl Transferase FY536_05565 PF00488 MutS domain V FY536_05565 PF05190 MutS family domain IV FY536_05565 PF05192 MutS domain III FY536_05565 PF05188 MutS domain II FY536_05565 PF01624 MutS domain I FY536_05570 PF02629 CoA binding domain FY536_05570 PF06971 Putative DNA-binding protein N-terminus FY536_05575 PF12848 ABC transporter FY536_05575 PF16326 ABC transporter C-terminal domain FY536_05575 PF00005 ABC transporter FY536_05580 PF02631 RecX family FY536_05590 PF00999 Sodium/hydrogen exchanger family FY536_05650 PF14659 Phage integrase, N-terminal SAM-like domain FY536_05650 PF00589 Phage integrase family FY536_05655 PF04167 Protein of unknown function (DUF402) FY536_05665 PF00155 Aminotransferase class I and II FY536_05670 PF12822 ECF transporter, substrate-specific component FY536_05675 PF01741 Large-conductance mechanosensitive channel, MscL FY536_05680 PF01268 Formate--tetrahydrofolate ligase FY536_05685 PF01966 HD domain FY536_05690 PF00166 Chaperonin 10 Kd subunit FY536_05695 PF00118 TCP-1/cpn60 chaperonin family FY536_05705 PF07155 ECF-type riboflavin transporter, S component FY536_05710 PF01119 DNA mismatch repair protein, C-terminal domain FY536_05710 PF08676 MutL C terminal dimerisation domain FY536_05715 PF07308 Protein of unknown function (DUF1456) FY536_05720 PF00258 Flavodoxin FY536_05725 PF02824 TGS domain FY536_05725 PF03129 Anticodon binding domain FY536_05725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FY536_05725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FY536_05735 PF00005 ABC transporter FY536_05745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FY536_05745 PF14572 Phosphoribosyl synthetase-associated domain FY536_05750 PF00248 Aldo/keto reductase family FY536_05765 PF02686 Glu-tRNAGln amidotransferase C subunit FY536_05770 PF01425 Amidase FY536_05775 PF02934 GatB/GatE catalytic domain FY536_05775 PF02637 GatB domain FY536_05780 PF00781 Diacylglycerol kinase catalytic domain FY536_05790 PF10282 Lactonase, 7-bladed beta-propeller FY536_05795 PF01594 AI-2E family transporter FY536_05800 PF09335 SNARE associated Golgi protein FY536_05805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FY536_05810 PF09371 Tex-like protein N-terminal domain FY536_05810 PF17674 HHH domain FY536_05810 PF00575 S1 RNA binding domain FY536_05810 PF16921 Tex protein YqgF-like domain FY536_05920 PF13457 GW (Gly-Tryp) dipeptide domain FY536_05920 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FY536_05940 PF00313 'Cold-shock' DNA-binding domain FY536_05955 PF01048 Phosphorylase superfamily FY536_05960 PF02576 RimP N-terminal domain FY536_05960 PF17384 RimP C-terminal SH3 domain FY536_05965 PF00575 S1 RNA binding domain FY536_05965 PF08529 NusA N-terminal domain FY536_05965 PF13184 NusA-like KH domain FY536_05970 PF04296 Protein of unknown function (DUF448) FY536_05975 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family FY536_05980 PF04760 Translation initiation factor IF-2, N-terminal region FY536_05980 PF11987 Translation-initiation factor 2 FY536_05980 PF00009 Elongation factor Tu GTP binding domain FY536_05985 PF02033 Ribosome-binding factor A FY536_05990 PF01580 FtsK/SpoIIIE family FY536_05990 PF09397 Ftsk gamma domain FY536_05990 PF17854 FtsK alpha domain FY536_06010 PF17770 Ribonuclease J C-terminal domain FY536_06010 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FY536_06010 PF00753 Metallo-beta-lactamase superfamily FY536_06020 PF03143 Elongation factor Tu C-terminal domain FY536_06020 PF03144 Elongation factor Tu domain 2 FY536_06020 PF00009 Elongation factor Tu GTP binding domain FY536_06025 PF05698 Bacterial trigger factor protein (TF) C-terminus FY536_06025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FY536_06025 PF05697 Bacterial trigger factor protein (TF) FY536_06030 PF10431 C-terminal, D2-small domain, of ClpB protein FY536_06030 PF06689 ClpX C4-type zinc finger FY536_06030 PF07724 AAA domain (Cdc48 subfamily) FY536_06035 PF01926 50S ribosome-binding GTPase FY536_06050 PF00488 MutS domain V FY536_06050 PF01713 Smr domain FY536_06055 PF00248 Aldo/keto reductase family FY536_06065 PF02441 Flavoprotein FY536_06065 PF04127 DNA / pantothenate metabolism flavoprotein FY536_06070 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal FY536_06070 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal FY536_06080 PF08239 Bacterial SH3 domain FY536_06080 PF01520 N-acetylmuramoyl-L-alanine amidase FY536_06085 PF13393 Histidyl-tRNA synthetase FY536_06085 PF03129 Anticodon binding domain FY536_06090 PF02938 GAD domain FY536_06090 PF00152 tRNA synthetases class II (D, K and N) FY536_06090 PF01336 OB-fold nucleic acid binding domain FY536_06095 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FY536_06095 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FY536_06100 PF01165 Ribosomal protein S21 FY536_06105 PF09424 Yqey-like protein FY536_06110 PF02130 Uncharacterized protein family UPF0054 FY536_06115 PF01219 Prokaryotic diacylglycerol kinase FY536_06120 PF07650 KH domain FY536_06120 PF01926 50S ribosome-binding GTPase FY536_06125 PF11967 Recombination protein O N terminal FY536_06125 PF02565 Recombination protein O C terminal FY536_06130 PF00588 SpoU rRNA Methylase family FY536_06135 PF01509 TruB family pseudouridylate synthase (N terminal domain) FY536_06135 PF16198 tRNA pseudouridylate synthase B C-terminal domain FY536_06140 PF01687 Riboflavin kinase FY536_06140 PF06574 FAD synthetase FY536_06145 PF05670 NFACT protein RNA binding domain FY536_06150 PF00005 ABC transporter FY536_06150 PF01476 LysM domain FY536_06155 PF01061 ABC-2 type transporter FY536_06165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FY536_06165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FY536_06170 PF02447 GntP family permease FY536_06175 PF13091 PLD-like domain FY536_06175 PF13396 Phospholipase_D-nuclease N-terminal FY536_06180 PF05193 Peptidase M16 inactive domain FY536_06185 PF05193 Peptidase M16 inactive domain FY536_06185 PF00675 Insulinase (Peptidase family M16) FY536_06190 PF13464 Domain of unknown function (DUF4115) FY536_06195 PF01066 CDP-alcohol phosphatidyltransferase FY536_06200 PF02464 Competence-damaged protein FY536_06200 PF18146 Damage-inducible protein CinA KH domain FY536_06200 PF00994 Probable molybdopterin binding domain FY536_06205 PF00154 recA bacterial DNA recombination protein FY536_06220 PF00557 Metallopeptidase family M24 FY536_06225 PF10702 Protein of unknown function (DUF2507) FY536_06235 PF02660 Glycerol-3-phosphate acyltransferase FY536_06240 PF00753 Metallo-beta-lactamase superfamily FY536_06245 PF01368 DHH family FY536_06245 PF17768 RecJ OB domain FY536_06245 PF02272 DHHA1 domain FY536_06245 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FY536_06250 PF00156 Phosphoribosyl transferase domain FY536_06255 PF05979 Bacterial protein of unknown function (DUF896) FY536_06260 PF03672 Uncharacterised protein family (UPF0154) FY536_06265 PF01553 Acyltransferase FY536_06270 PF05175 Methyltransferase small domain FY536_06275 PF01541 GIY-YIG catalytic domain FY536_06280 PF00318 Ribosomal protein S2 FY536_06285 PF00889 Elongation factor TS FY536_06290 PF00696 Amino acid kinase family FY536_06295 PF01765 Ribosome recycling factor FY536_06300 PF01380 SIS domain FY536_06305 PF01712 Deoxynucleoside kinase FY536_06310 PF13419 Haloacid dehalogenase-like hydrolase FY536_06315 PF01177 Asp/Glu/Hydantoin racemase FY536_06320 PF01725 Ham1 family FY536_06335 PF00206 Lyase FY536_06335 PF10397 Adenylosuccinate lyase C-terminus FY536_06350 PF13538 UvrD-like helicase C-terminal domain FY536_06350 PF14490 Helix-hairpin-helix containing domain FY536_06350 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FY536_06355 PF13735 tRNA nucleotidyltransferase domain 2 putative FY536_06355 PF12627 Probable RNA and SrmB- binding site of polymerase A FY536_06355 PF01743 Poly A polymerase head domain FY536_06360 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FY536_06360 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FY536_06375 PF05389 Negative regulator of genetic competence (MecA) FY536_06385 PF08439 Oligopeptidase F FY536_06385 PF01432 Peptidase family M3 FY536_06390 PF02091 Glycyl-tRNA synthetase alpha subunit FY536_06395 PF02092 Glycyl-tRNA synthetase beta subunit FY536_06405 PF03358 NADPH-dependent FMN reductase FY536_06410 PF07690 Major Facilitator Superfamily FY536_06420 PF00528 Binding-protein-dependent transport system inner membrane component FY536_06425 PF00005 ABC transporter FY536_06430 PF00497 Bacterial extracellular solute-binding proteins, family 3 FY536_06435 PF07690 Major Facilitator Superfamily FY536_06440 PF00905 Penicillin binding protein transpeptidase domain FY536_06440 PF00912 Transglycosylase FY536_06445 PF03838 Recombination protein U FY536_06450 PF06908 YspA SLOG family FY536_06455 PF05103 DivIVA protein FY536_06465 PF02926 THUMP domain FY536_06465 PF01170 Putative RNA methylase family UPF0020 FY536_06470 PF13361 UvrD-like helicase C-terminal domain FY536_06470 PF00580 UvrD/REP helicase N-terminal domain FY536_06475 PF03120 NAD-dependent DNA ligase OB-fold domain FY536_06475 PF00533 BRCA1 C Terminus (BRCT) domain FY536_06475 PF01653 NAD-dependent DNA ligase adenylation domain FY536_06475 PF12826 Helix-hairpin-helix motif FY536_06475 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FY536_06495 PF00664 ABC transporter transmembrane region FY536_06495 PF00005 ABC transporter FY536_06500 PF17757 UvrB interaction domain FY536_06500 PF12344 Ultra-violet resistance protein B FY536_06500 PF02151 UvrB/uvrC motif FY536_06500 PF04851 Type III restriction enzyme, res subunit FY536_06500 PF00271 Helicase conserved C-terminal domain FY536_06510 PF00849 RNA pseudouridylate synthase FY536_06510 PF01479 S4 domain FY536_06515 PF00156 Phosphoribosyl transferase domain FY536_06520 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FY536_06520 PF00117 Glutamine amidotransferase class-I FY536_06525 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FY536_06525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FY536_06525 PF02142 MGS-like domain FY536_06545 PF03780 Asp23 family, cell envelope-related function FY536_06550 PF00440 Bacterial regulatory proteins, tetR family FY536_06555 PF01070 FMN-dependent dehydrogenase FY536_06560 PF00288 GHMP kinases N terminal domain FY536_06560 PF08544 GHMP kinases C terminal FY536_06570 PF10509 Galactokinase galactose-binding signature FY536_06570 PF08544 GHMP kinases C terminal FY536_06570 PF00288 GHMP kinases N terminal domain FY536_06575 PF00929 Exonuclease FY536_06575 PF04851 Type III restriction enzyme, res subunit FY536_06575 PF13307 Helicase C-terminal domain FY536_06585 PF01336 OB-fold nucleic acid binding domain FY536_06585 PF00152 tRNA synthetases class II (D, K and N) FY536_06590 PF00005 ABC transporter FY536_06590 PF16326 ABC transporter C-terminal domain FY536_06590 PF12848 ABC transporter FY536_06595 PF00186 Dihydrofolate reductase FY536_06605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FY536_06605 PF01336 OB-fold nucleic acid binding domain FY536_06605 PF02811 PHP domain FY536_06605 PF14579 Helix-hairpin-helix motif FY536_06605 PF07733 Bacterial DNA polymerase III alpha NTPase domain FY536_06610 PF13291 ACT domain FY536_06610 PF02824 TGS domain FY536_06610 PF04607 Region found in RelA / SpoT proteins FY536_06620 PF17783 CvfB-like winged helix domain FY536_06620 PF13509 S1 domain FY536_06630 PF00849 RNA pseudouridylate synthase FY536_06630 PF01479 S4 domain FY536_06640 PF00270 DEAD/DEAH box helicase FY536_06640 PF00271 Helicase conserved C-terminal domain FY536_06650 PF02224 Cytidylate kinase FY536_06655 PF00575 S1 RNA binding domain FY536_06660 PF01926 50S ribosome-binding GTPase FY536_06660 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FY536_06665 PF00216 Bacterial DNA-binding protein FY536_06670 PF06800 Sugar transport protein FY536_06680 PF10437 Bacterial lipoate protein ligase C-terminus FY536_06680 PF03099 Biotin/lipoate A/B protein ligase family FY536_06685 PF00676 Dehydrogenase E1 component FY536_06690 PF02779 Transketolase, pyrimidine binding domain FY536_06690 PF02780 Transketolase, C-terminal domain FY536_06695 PF02817 e3 binding domain FY536_06695 PF00364 Biotin-requiring enzyme FY536_06695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FY536_06700 PF07992 Pyridine nucleotide-disulphide oxidoreductase FY536_06700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FY536_06710 PF03816 Cell envelope-related transcriptional attenuator domain FY536_06715 PF02706 Chain length determinant protein FY536_06720 PF13614 AAA domain FY536_06725 PF02397 Bacterial sugar transferase FY536_06740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_06740 PF03466 LysR substrate binding domain FY536_06745 PF03601 Conserved hypothetical protein 698 FY536_06750 PF17156 Gammaproteobacterial periplasmic sensor domain FY536_06750 PF00990 Diguanylate cyclase, GGDEF domain FY536_06755 PF00877 NlpC/P60 family FY536_06770 PF01807 CHC2 zinc finger FY536_06770 PF08275 DNA primase catalytic core, N-terminal domain FY536_06770 PF10410 DnaB-helicase binding domain of primase FY536_06775 PF03979 Sigma-70 factor, region 1.1 FY536_06775 PF00140 Sigma-70 factor, region 1.2 FY536_06775 PF04542 Sigma-70 region 2 FY536_06775 PF04539 Sigma-70 region 3 FY536_06775 PF04545 Sigma-70, region 4 FY536_06780 PF01628 HrcA protein C terminal domain FY536_06780 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FY536_06785 PF01025 GrpE FY536_06790 PF00012 Hsp70 protein FY536_06795 PF00684 DnaJ central domain FY536_06795 PF01556 DnaJ C terminal domain FY536_06795 PF00226 DnaJ domain FY536_06815 PF02397 Bacterial sugar transferase FY536_06820 PF07690 Major Facilitator Superfamily FY536_06825 PF00486 Transcriptional regulatory protein, C terminal FY536_06825 PF00072 Response regulator receiver domain FY536_06830 PF00512 His Kinase A (phospho-acceptor) domain FY536_06830 PF00989 PAS fold FY536_06830 PF16736 Single Cache-like FY536_06830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FY536_06835 PF00485 Phosphoribulokinase / Uridine kinase family FY536_06840 PF05343 M42 glutamyl aminopeptidase FY536_06845 PF03147 Ferredoxin-fold anticodon binding domain FY536_06845 PF01588 Putative tRNA binding domain FY536_06845 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FY536_06845 PF03483 B3/4 domain FY536_06845 PF03484 tRNA synthetase B5 domain FY536_06855 PF01225 Mur ligase family, catalytic domain FY536_06855 PF08245 Mur ligase middle domain FY536_06855 PF02875 Mur ligase family, glutamate ligase domain FY536_06860 PF01027 Inhibitor of apoptosis-promoting Bax1 FY536_06875 PF02803 Thiolase, C-terminal domain FY536_06875 PF00108 Thiolase, N-terminal domain FY536_06890 PF00990 Diguanylate cyclase, GGDEF domain FY536_06890 PF05230 MASE2 domain FY536_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FY536_06895 PF03466 LysR substrate binding domain FY536_06900 PF00390 Malic enzyme, N-terminal domain FY536_06900 PF03949 Malic enzyme, NAD binding domain FY536_06905 PF03390 2-hydroxycarboxylate transporter family FY536_06915 PF00230 Major intrinsic protein FY536_06920 PF00534 Glycosyl transferases group 1 FY536_06935 PF05870 Phenolic acid decarboxylase (PAD) FY536_06940 PF10400 Virulence activator alpha C-term FY536_06940 PF03551 Transcriptional regulator PadR-like family FY536_06945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FY536_06945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FY536_06945 PF00205 Thiamine pyrophosphate enzyme, central domain FY536_06950 PF07516 SecA Wing and Scaffold domain FY536_06950 PF01043 SecA preprotein cross-linking domain FY536_06950 PF07517 SecA DEAD-like domain FY536_06960 PF16929 Accessory Sec system GspB-transporter FY536_06970 PF00344 SecY translocase FY536_06990 PF04262 Glutamate-cysteine ligase FY536_06990 PF02655 ATP-grasp domain FY536_06990 PF18419 ATP-grasp-like domain FY536_07015 PF01051 Initiator Replication protein FY536_07030 PF03965 Penicillinase repressor