locus-tag class description WSWS_00001 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WSWS_00002 PF01202 Shikimate kinase WSWS_00003 PF00324 Amino acid permease WSWS_00004 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WSWS_00006 PF14815 NUDIX domain WSWS_00006 PF00730 HhH-GPD superfamily base excision DNA repair protein WSWS_00007 PF02527 rRNA small subunit methyltransferase G WSWS_00008 PF13614 AAA domain WSWS_00009 PF17762 HTH domain found in ParB protein WSWS_00009 PF02195 ParB-like nuclease domain WSWS_00010 PF06107 Bacterial protein of unknown function (DUF951) WSWS_00011 PF06071 Protein of unknown function (DUF933) WSWS_00011 PF01926 50S ribosome-binding GTPase WSWS_00013 PF00486 Transcriptional regulatory protein, C terminal WSWS_00013 PF00072 Response regulator receiver domain WSWS_00014 PF00512 His Kinase A (phospho-acceptor) domain WSWS_00014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00015 PF00768 D-alanyl-D-alanine carboxypeptidase WSWS_00015 PF07943 Penicillin-binding protein 5, C-terminal domain WSWS_00024 PF00854 POT family WSWS_00028 PF10263 SprT-like family WSWS_00029 PF01757 Acyltransferase family WSWS_00030 PF00005 ABC transporter WSWS_00030 PF12848 ABC transporter WSWS_00032 PF13508 Acetyltransferase (GNAT) domain WSWS_00036 PF01966 HD domain WSWS_00037 PF07690 Major Facilitator Superfamily WSWS_00038 PF00392 Bacterial regulatory proteins, gntR family WSWS_00038 PF07702 UTRA domain WSWS_00039 PF09364 XFP N-terminal domain WSWS_00039 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase WSWS_00039 PF09363 XFP C-terminal domain WSWS_00040 PF08543 Phosphomethylpyrimidine kinase WSWS_00043 PF03372 Endonuclease/Exonuclease/phosphatase family WSWS_00044 PF00005 ABC transporter WSWS_00045 PF00950 ABC 3 transport family WSWS_00047 PF13520 Amino acid permease WSWS_00049 PF07478 D-ala D-ala ligase C-terminus WSWS_00049 PF01820 D-ala D-ala ligase N-terminus WSWS_00050 PF00265 Thymidine kinase WSWS_00051 PF03462 PCRF domain WSWS_00051 PF00472 RF-1 domain WSWS_00052 PF05175 Methyltransferase small domain WSWS_00053 PF03481 Putative GTP-binding controlling metal-binding WSWS_00053 PF01300 Telomere recombination WSWS_00054 PF00464 Serine hydroxymethyltransferase WSWS_00057 PF00860 Permease family WSWS_00058 PF00119 ATP synthase A chain WSWS_00059 PF00137 ATP synthase subunit C WSWS_00060 PF00430 ATP synthase B/B' CF(0) WSWS_00061 PF00213 ATP synthase delta (OSCP) subunit WSWS_00062 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSWS_00062 PF00306 ATP synthase alpha/beta chain, C terminal domain WSWS_00062 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSWS_00063 PF00231 ATP synthase WSWS_00064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSWS_00064 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSWS_00065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain WSWS_00065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WSWS_00066 PF01712 Deoxynucleoside kinase WSWS_00067 PF02403 Seryl-tRNA synthetase N-terminal domain WSWS_00067 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSWS_00071 PF17871 AAA lid domain WSWS_00071 PF02861 Clp amino terminal domain, pathogenicity island component WSWS_00071 PF10431 C-terminal, D2-small domain, of ClpB protein WSWS_00071 PF07724 AAA domain (Cdc48 subfamily) WSWS_00071 PF00004 ATPase family associated with various cellular activities (AAA) WSWS_00072 PF04563 RNA polymerase beta subunit WSWS_00072 PF04561 RNA polymerase Rpb2, domain 2 WSWS_00072 PF04565 RNA polymerase Rpb2, domain 3 WSWS_00072 PF10385 RNA polymerase beta subunit external 1 domain WSWS_00072 PF00562 RNA polymerase Rpb2, domain 6 WSWS_00072 PF04560 RNA polymerase Rpb2, domain 7 WSWS_00073 PF05000 RNA polymerase Rpb1, domain 4 WSWS_00073 PF00623 RNA polymerase Rpb1, domain 2 WSWS_00073 PF04997 RNA polymerase Rpb1, domain 1 WSWS_00073 PF04998 RNA polymerase Rpb1, domain 5 WSWS_00073 PF04983 RNA polymerase Rpb1, domain 3 WSWS_00077 PF02773 S-adenosylmethionine synthetase, C-terminal domain WSWS_00077 PF02772 S-adenosylmethionine synthetase, central domain WSWS_00077 PF00438 S-adenosylmethionine synthetase, N-terminal domain WSWS_00078 PF01327 Polypeptide deformylase WSWS_00079 PF01433 Peptidase family M1 domain WSWS_00079 PF11838 ERAP1-like C-terminal domain WSWS_00080 PF01938 TRAM domain WSWS_00080 PF05958 tRNA (Uracil-5-)-methyltransferase WSWS_00082 PF01569 PAP2 superfamily WSWS_00083 PF13603 Leucyl-tRNA synthetase, Domain 2 WSWS_00083 PF08264 Anticodon-binding domain of tRNA WSWS_00083 PF09334 tRNA synthetases class I (M) WSWS_00083 PF00133 tRNA synthetases class I (I, L, M and V) WSWS_00085 PF02223 Thymidylate kinase WSWS_00086 PF06153 Cyclic-di-AMP receptor WSWS_00087 PF09115 DNA polymerase III, delta subunit, C terminal WSWS_00088 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WSWS_00090 PF16363 GDP-mannose 4,6 dehydratase WSWS_00091 PF00814 Glycoprotease family WSWS_00092 PF00583 Acetyltransferase (GNAT) family WSWS_00094 PF00814 Glycoprotease family WSWS_00095 PF00348 Polyprenyl synthetase WSWS_00096 PF00338 Ribosomal protein S10p/S20e WSWS_00097 PF00297 Ribosomal protein L3 WSWS_00098 PF00573 Ribosomal protein L4/L1 family WSWS_00099 PF00276 Ribosomal protein L23 WSWS_00100 PF00181 Ribosomal Proteins L2, RNA binding domain WSWS_00100 PF03947 Ribosomal Proteins L2, C-terminal domain WSWS_00101 PF00203 Ribosomal protein S19 WSWS_00102 PF00237 Ribosomal protein L22p/L17e WSWS_00103 PF00189 Ribosomal protein S3, C-terminal domain WSWS_00103 PF07650 KH domain WSWS_00104 PF00252 Ribosomal protein L16p/L10e WSWS_00105 PF00831 Ribosomal L29 protein WSWS_00106 PF00366 Ribosomal protein S17 WSWS_00107 PF00238 Ribosomal protein L14p/L23e WSWS_00108 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WSWS_00108 PF00467 KOW motif WSWS_00109 PF00673 ribosomal L5P family C-terminus WSWS_00109 PF00281 Ribosomal protein L5 WSWS_00110 PF00410 Ribosomal protein S8 WSWS_00111 PF00347 Ribosomal protein L6 WSWS_00112 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WSWS_00113 PF00333 Ribosomal protein S5, N-terminal domain WSWS_00113 PF03719 Ribosomal protein S5, C-terminal domain WSWS_00114 PF00327 Ribosomal protein L30p/L7e WSWS_00115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WSWS_00116 PF00344 SecY translocase WSWS_00117 PF05191 Adenylate kinase, active site lid WSWS_00118 PF01176 Translation initiation factor 1A / IF-1 WSWS_00119 PF00444 Ribosomal protein L36 WSWS_00120 PF00416 Ribosomal protein S13/S18 WSWS_00121 PF00411 Ribosomal protein S11 WSWS_00122 PF01000 RNA polymerase Rpb3/RpoA insert domain WSWS_00122 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WSWS_00122 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WSWS_00123 PF01196 Ribosomal protein L17 WSWS_00127 PF00817 impB/mucB/samB family WSWS_00127 PF11799 impB/mucB/samB family C-terminal domain WSWS_00127 PF11798 IMS family HHH motif WSWS_00129 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00130 PF00005 ABC transporter WSWS_00130 PF09383 NIL domain WSWS_00131 PF03180 NLPA lipoprotein WSWS_00133 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain WSWS_00133 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family WSWS_00133 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain WSWS_00134 PF02540 NAD synthase WSWS_00135 PF01406 tRNA synthetases class I (C) catalytic domain WSWS_00135 PF09190 DALR domain WSWS_00136 PF00636 Ribonuclease III domain WSWS_00137 PF08032 RNA 2'-O ribose methyltransferase substrate binding WSWS_00137 PF00588 SpoU rRNA Methylase family WSWS_00139 PF00471 Ribosomal protein L33 WSWS_00141 PF00467 KOW motif WSWS_00141 PF02357 Transcription termination factor nusG WSWS_00142 PF03946 Ribosomal protein L11, N-terminal domain WSWS_00142 PF00298 Ribosomal protein L11, RNA binding domain WSWS_00143 PF00687 Ribosomal protein L1p/L10e family WSWS_00144 PF13185 GAF domain WSWS_00145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_00145 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_00146 PF00248 Aldo/keto reductase family WSWS_00148 PF00466 Ribosomal protein L10 WSWS_00149 PF16320 Ribosomal protein L7/L12 dimerisation domain WSWS_00149 PF00542 Ribosomal protein L7/L12 C-terminal domain WSWS_00150 PF01625 Peptide methionine sulfoxide reductase WSWS_00151 PF00232 Glycosyl hydrolase family 1 WSWS_00152 PF02378 Phosphotransferase system, EIIC WSWS_00153 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WSWS_00154 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit WSWS_00155 PF00232 Glycosyl hydrolase family 1 WSWS_00157 PF00842 Alanine racemase, C-terminal domain WSWS_00157 PF01168 Alanine racemase, N-terminal domain WSWS_00158 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system WSWS_00159 PF07690 Major Facilitator Superfamily WSWS_00160 PF08279 HTH domain WSWS_00160 PF02829 3H domain WSWS_00161 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_00161 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_00162 PF13538 UvrD-like helicase C-terminal domain WSWS_00163 PF00579 tRNA synthetases class I (W and Y) WSWS_00165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WSWS_00165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_00166 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_00167 PF02447 GntP family permease WSWS_00168 PF00465 Iron-containing alcohol dehydrogenase WSWS_00168 PF00171 Aldehyde dehydrogenase family WSWS_00169 PF08032 RNA 2'-O ribose methyltransferase substrate binding WSWS_00169 PF00588 SpoU rRNA Methylase family WSWS_00171 PF00849 RNA pseudouridylate synthase WSWS_00172 PF01638 HxlR-like helix-turn-helix WSWS_00176 PF03741 Integral membrane protein TerC family WSWS_00177 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_00178 PF03741 Integral membrane protein TerC family WSWS_00179 PF01546 Peptidase family M20/M25/M40 WSWS_00180 PF12705 PD-(D/E)XK nuclease superfamily WSWS_00181 PF13361 UvrD-like helicase C-terminal domain WSWS_00181 PF00580 UvrD/REP helicase N-terminal domain WSWS_00181 PF12705 PD-(D/E)XK nuclease superfamily WSWS_00182 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_00182 PF00107 Zinc-binding dehydrogenase WSWS_00183 PF07690 Major Facilitator Superfamily WSWS_00184 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WSWS_00184 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WSWS_00185 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain WSWS_00185 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain WSWS_00186 PF09182 Bacterial purine repressor, N-terminal WSWS_00186 PF00156 Phosphoribosyl transferase domain WSWS_00187 PF12804 MobA-like NTP transferase domain WSWS_00187 PF00132 Bacterial transferase hexapeptide (six repeats) WSWS_00188 PF14572 Phosphoribosyl synthetase-associated domain WSWS_00188 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WSWS_00189 PF00230 Major intrinsic protein WSWS_00191 PF01250 Ribosomal protein S6 WSWS_00192 PF00436 Single-strand binding protein family WSWS_00193 PF01084 Ribosomal protein S18 WSWS_00194 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WSWS_00197 PF00588 SpoU rRNA Methylase family WSWS_00197 PF08032 RNA 2'-O ribose methyltransferase substrate binding WSWS_00198 PF00005 ABC transporter WSWS_00199 PF00005 ABC transporter WSWS_00200 PF02361 Cobalt transport protein WSWS_00201 PF01416 tRNA pseudouridine synthase WSWS_00202 PF00271 Helicase conserved C-terminal domain WSWS_00202 PF12419 SNF2 Helicase protein WSWS_00202 PF00176 SNF2 family N-terminal domain WSWS_00203 PF00572 Ribosomal protein L13 WSWS_00204 PF00380 Ribosomal protein S9/S16 WSWS_00209 PF01580 FtsK/SpoIIIE family WSWS_00209 PF17854 FtsK alpha domain WSWS_00209 PF09397 Ftsk gamma domain WSWS_00212 PF04851 Type III restriction enzyme, res subunit WSWS_00212 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) WSWS_00212 PF00271 Helicase conserved C-terminal domain WSWS_00212 PF08463 EcoEI R protein C-terminal WSWS_00217 PF16874 Glycosyl hydrolase family 36 C-terminal domain WSWS_00217 PF16875 Glycosyl hydrolase family 36 N-terminal domain WSWS_00219 PF00483 Nucleotidyl transferase WSWS_00220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase WSWS_00221 PF16363 GDP-mannose 4,6 dehydratase WSWS_00222 PF04321 RmlD substrate binding domain WSWS_00227 PF13090 Polyphosphate kinase C-terminal domain 2 WSWS_00227 PF17941 Polyphosphate kinase C-terminal domain 1 WSWS_00227 PF13089 Polyphosphate kinase N-terminal domain WSWS_00227 PF02503 Polyphosphate kinase middle domain WSWS_00228 PF02541 Ppx/GppA phosphatase family WSWS_00234 PF00294 pfkB family carbohydrate kinase WSWS_00234 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WSWS_00235 PF07662 Na+ dependent nucleoside transporter C-terminus WSWS_00235 PF01773 Na+ dependent nucleoside transporter N-terminus WSWS_00236 PF01156 Inosine-uridine preferring nucleoside hydrolase WSWS_00237 PF01156 Inosine-uridine preferring nucleoside hydrolase WSWS_00240 PF00005 ABC transporter WSWS_00240 PF17755 UvrA DNA-binding domain WSWS_00240 PF17760 UvrA interaction domain WSWS_00242 PF02237 Biotin protein ligase C terminal domain WSWS_00242 PF08279 HTH domain WSWS_00242 PF03099 Biotin/lipoate A/B protein ligase family WSWS_00243 PF02632 BioY family WSWS_00244 PF00625 Guanylate kinase WSWS_00247 PF00005 ABC transporter WSWS_00248 PF00497 Bacterial extracellular solute-binding proteins, family 3 WSWS_00249 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00250 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00251 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_00252 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00253 PF12911 N-terminal TM domain of oligopeptide transport permease C WSWS_00253 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00254 PF00005 ABC transporter WSWS_00254 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WSWS_00255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WSWS_00255 PF00005 ABC transporter WSWS_00256 PF00999 Sodium/hydrogen exchanger family WSWS_00258 PF02272 DHHA1 domain WSWS_00258 PF01368 DHH family WSWS_00259 PF01281 Ribosomal protein L9, N-terminal domain WSWS_00259 PF03948 Ribosomal protein L9, C-terminal domain WSWS_00260 PF11490 DNA polymerase III polC-type N-terminus II WSWS_00260 PF07733 Bacterial DNA polymerase III alpha NTPase domain WSWS_00260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WSWS_00260 PF14579 Helix-hairpin-helix motif WSWS_00260 PF02811 PHP domain WSWS_00260 PF14480 DNA polymerase III polC-type N-terminus I WSWS_00260 PF00929 Exonuclease WSWS_00266 PF00271 Helicase conserved C-terminal domain WSWS_00266 PF04851 Type III restriction enzyme, res subunit WSWS_00268 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WSWS_00268 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus WSWS_00270 PF09371 Tex-like protein N-terminal domain WSWS_00270 PF16921 Tex protein YqgF-like domain WSWS_00270 PF00575 S1 RNA binding domain WSWS_00270 PF17674 HHH domain WSWS_00273 PF08402 TOBE domain WSWS_00273 PF00005 ABC transporter WSWS_00274 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00275 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00276 PF13416 Bacterial extracellular solute-binding protein WSWS_00277 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WSWS_00278 PF00166 Chaperonin 10 Kd subunit WSWS_00279 PF00118 TCP-1/cpn60 chaperonin family WSWS_00280 PF00313 'Cold-shock' DNA-binding domain WSWS_00281 PF01594 AI-2E family transporter WSWS_00283 PF00497 Bacterial extracellular solute-binding proteins, family 3 WSWS_00284 PF00005 ABC transporter WSWS_00285 PF04203 Sortase domain WSWS_00287 PF01515 Phosphate acetyl/butaryl transferase WSWS_00288 PF03796 DnaB-like helicase C terminal domain WSWS_00288 PF00772 DnaB-like helicase N terminal domain WSWS_00289 PF07690 Major Facilitator Superfamily WSWS_00294 PF08544 GHMP kinases C terminal WSWS_00294 PF00288 GHMP kinases N terminal domain WSWS_00295 PF02388 FemAB family WSWS_00296 PF01979 Amidohydrolase family WSWS_00298 PF09330 D-lactate dehydrogenase, membrane binding WSWS_00298 PF01565 FAD binding domain WSWS_00299 PF00163 Ribosomal protein S4/S9 N-terminal domain WSWS_00299 PF01479 S4 domain WSWS_00300 PF06160 Septation ring formation regulator, EzrA WSWS_00301 PF13538 UvrD-like helicase C-terminal domain WSWS_00302 PF00485 Phosphoribulokinase / Uridine kinase family WSWS_00305 PF16193 AAA C-terminal domain WSWS_00305 PF05496 Holliday junction DNA helicase RuvB P-loop domain WSWS_00305 PF12002 MgsA AAA+ ATPase C terminal WSWS_00307 PF00582 Universal stress protein family WSWS_00310 PF03006 Haemolysin-III related WSWS_00311 PF05389 Negative regulator of genetic competence (MecA) WSWS_00313 PF02653 Branched-chain amino acid transport system / permease component WSWS_00314 PF00005 ABC transporter WSWS_00315 PF00356 Bacterial regulatory proteins, lacI family WSWS_00316 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WSWS_00316 PF00294 pfkB family carbohydrate kinase WSWS_00317 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WSWS_00318 PF02272 DHHA1 domain WSWS_00318 PF01411 tRNA synthetases class II (A) WSWS_00318 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSWS_00319 PF06135 IreB regulatory phosphoprotein WSWS_00320 PF03652 Holliday junction resolvase WSWS_00321 PF04138 GtrA-like protein WSWS_00322 PF06949 Protein of unknown function (DUF1292) WSWS_00323 PF06949 Protein of unknown function (DUF1292) WSWS_00324 PF00781 Diacylglycerol kinase catalytic domain WSWS_00326 PF00860 Permease family WSWS_00327 PF00709 Adenylosuccinate synthetase WSWS_00331 PF01255 Putative undecaprenyl diphosphate synthase WSWS_00333 PF02163 Peptidase family M50 WSWS_00333 PF17820 PDZ domain WSWS_00335 PF14667 Polysaccharide biosynthesis C-terminal domain WSWS_00335 PF01943 Polysaccharide biosynthesis protein WSWS_00337 PF04073 Aminoacyl-tRNA editing domain WSWS_00337 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSWS_00337 PF03129 Anticodon binding domain WSWS_00338 PF14622 Ribonuclease-III-like WSWS_00338 PF00035 Double-stranded RNA binding motif WSWS_00339 PF02463 RecF/RecN/SMC N terminal domain WSWS_00339 PF06470 SMC proteins Flexible Hinge Domain WSWS_00340 PF02881 SRP54-type protein, helical bundle domain WSWS_00340 PF00448 SRP54-type protein, GTPase domain WSWS_00341 PF04297 Putative helix-turn-helix protein, YlxM / p13 like WSWS_00342 PF02978 Signal peptide binding domain WSWS_00342 PF02881 SRP54-type protein, helical bundle domain WSWS_00342 PF00448 SRP54-type protein, GTPase domain WSWS_00343 PF07972 NrdI Flavodoxin like WSWS_00344 PF08343 Ribonucleotide reductase N-terminal WSWS_00344 PF00317 Ribonucleotide reductase, all-alpha domain WSWS_00344 PF02867 Ribonucleotide reductase, barrel domain WSWS_00345 PF00268 Ribonucleotide reductase, small chain WSWS_00346 PF12822 ECF transporter, substrate-specific component WSWS_00347 PF02110 Hydroxyethylthiazole kinase family WSWS_00348 PF08543 Phosphomethylpyrimidine kinase WSWS_00349 PF02581 Thiamine monophosphate synthase WSWS_00351 PF01119 DNA mismatch repair protein, C-terminal domain WSWS_00351 PF08676 MutL C terminal dimerisation domain WSWS_00352 PF00258 Flavodoxin WSWS_00353 PF02824 TGS domain WSWS_00353 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSWS_00353 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSWS_00353 PF03129 Anticodon binding domain WSWS_00355 PF10397 Adenylosuccinate lyase C-terminus WSWS_00355 PF00206 Lyase WSWS_00356 PF07977 FabA-like domain WSWS_00357 PF01047 MarR family WSWS_00358 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WSWS_00358 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WSWS_00359 PF00550 Phosphopantetheine attachment site WSWS_00360 PF03060 Nitronate monooxygenase WSWS_00361 PF00698 Acyl transferase domain WSWS_00363 PF00109 Beta-ketoacyl synthase, N-terminal domain WSWS_00363 PF02801 Beta-ketoacyl synthase, C-terminal domain WSWS_00365 PF07977 FabA-like domain WSWS_00366 PF02785 Biotin carboxylase C-terminal domain WSWS_00366 PF00289 Biotin carboxylase, N-terminal domain WSWS_00366 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSWS_00367 PF01039 Carboxyl transferase domain WSWS_00368 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WSWS_00377 PF09586 Bacterial membrane protein YfhO WSWS_00378 PF03830 PTS system sorbose subfamily IIB component WSWS_00378 PF03610 PTS system fructose IIA component WSWS_00379 PF03609 PTS system sorbose-specific iic component WSWS_00380 PF03613 PTS system mannose/fructose/sorbose family IID component WSWS_00382 PF02631 RecX family WSWS_00383 PF04167 Protein of unknown function (DUF402) WSWS_00385 PF00664 ABC transporter transmembrane region WSWS_00385 PF00005 ABC transporter WSWS_00386 PF00005 ABC transporter WSWS_00386 PF00664 ABC transporter transmembrane region WSWS_00388 PF01432 Peptidase family M3 WSWS_00388 PF08439 Oligopeptidase F WSWS_00389 PF00557 Metallopeptidase family M24 WSWS_00389 PF01321 Creatinase/Prolidase N-terminal domain WSWS_00390 PF00356 Bacterial regulatory proteins, lacI family WSWS_00391 PF00731 AIR carboxylase WSWS_00392 PF02222 ATP-grasp domain WSWS_00392 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WSWS_00393 PF01259 SAICAR synthetase WSWS_00394 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WSWS_00396 PF02769 AIR synthase related protein, C-terminal domain WSWS_00396 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WSWS_00396 PF00586 AIR synthase related protein, N-terminal domain WSWS_00397 PF13537 Glutamine amidotransferase domain WSWS_00397 PF00156 Phosphoribosyl transferase domain WSWS_00398 PF00586 AIR synthase related protein, N-terminal domain WSWS_00398 PF02769 AIR synthase related protein, C-terminal domain WSWS_00399 PF00551 Formyl transferase WSWS_00400 PF01808 AICARFT/IMPCHase bienzyme WSWS_00400 PF02142 MGS-like domain WSWS_00401 PF02844 Phosphoribosylglycinamide synthetase, N domain WSWS_00401 PF02843 Phosphoribosylglycinamide synthetase, C domain WSWS_00401 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WSWS_00402 PF01268 Formate--tetrahydrofolate ligase WSWS_00403 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_00404 PF01979 Amidohydrolase family WSWS_00406 PF07690 Major Facilitator Superfamily WSWS_00407 PF16198 tRNA pseudouridylate synthase B C-terminal domain WSWS_00407 PF01509 TruB family pseudouridylate synthase (N terminal domain) WSWS_00408 PF00871 Acetokinase family WSWS_00409 PF00356 Bacterial regulatory proteins, lacI family WSWS_00409 PF13407 Periplasmic binding protein domain WSWS_00412 PF00294 pfkB family carbohydrate kinase WSWS_00413 PF01842 ACT domain WSWS_00413 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_00413 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WSWS_00414 PF08245 Mur ligase middle domain WSWS_00414 PF02875 Mur ligase family, glutamate ligase domain WSWS_00416 PF02565 Recombination protein O C terminal WSWS_00416 PF11967 Recombination protein O N terminal WSWS_00417 PF02091 Glycyl-tRNA synthetase alpha subunit WSWS_00418 PF02092 Glycyl-tRNA synthetase beta subunit WSWS_00421 PF01330 RuvA N terminal domain WSWS_00421 PF07499 RuvA, C-terminal domain WSWS_00422 PF05496 Holliday junction DNA helicase RuvB P-loop domain WSWS_00422 PF05491 RuvB C-terminal winged helix domain WSWS_00422 PF17864 RuvB AAA lid domain WSWS_00423 PF02547 Queuosine biosynthesis protein WSWS_00424 PF01702 Queuine tRNA-ribosyltransferase WSWS_00425 PF02699 Preprotein translocase subunit WSWS_00427 PF02645 Uncharacterised protein, DegV family COG1307 WSWS_00428 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_00428 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_00431 PF13411 MerR HTH family regulatory protein WSWS_00439 PF02086 D12 class N6 adenine-specific DNA methyltransferase WSWS_00441 PF00480 ROK family WSWS_00442 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00443 PF00005 ABC transporter WSWS_00444 PF00497 Bacterial extracellular solute-binding proteins, family 3 WSWS_00445 PF00288 GHMP kinases N terminal domain WSWS_00445 PF08544 GHMP kinases C terminal WSWS_00446 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WSWS_00447 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WSWS_00448 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WSWS_00450 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WSWS_00450 PF01476 LysM domain WSWS_00454 PF00849 RNA pseudouridylate synthase WSWS_00454 PF01479 S4 domain WSWS_00455 PF00156 Phosphoribosyl transferase domain WSWS_00456 PF00117 Glutamine amidotransferase class-I WSWS_00456 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WSWS_00457 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSWS_00457 PF02142 MGS-like domain WSWS_00457 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSWS_00464 PF00324 Amino acid permease WSWS_00465 PF00224 Pyruvate kinase, barrel domain WSWS_00465 PF02887 Pyruvate kinase, alpha/beta domain WSWS_00465 PF00391 PEP-utilising enzyme, mobile domain WSWS_00466 PF00232 Glycosyl hydrolase family 1 WSWS_00467 PF00874 PRD domain WSWS_00467 PF03123 CAT RNA binding domain WSWS_00468 PF00367 phosphotransferase system, EIIB WSWS_00468 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_00468 PF02378 Phosphotransferase system, EIIC WSWS_00470 PF04452 RNA methyltransferase WSWS_00472 PF02381 MraZ protein, putative antitoxin-like WSWS_00473 PF01795 MraW methylase family WSWS_00476 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WSWS_00476 PF00953 Glycosyl transferase family 4 WSWS_00477 PF02875 Mur ligase family, glutamate ligase domain WSWS_00477 PF08245 Mur ligase middle domain WSWS_00478 PF03033 Glycosyltransferase family 28 N-terminal domain WSWS_00478 PF04101 Glycosyltransferase family 28 C-terminal domain WSWS_00479 PF03799 Cell division protein FtsQ WSWS_00480 PF02491 SHS2 domain inserted in FTSA WSWS_00480 PF11983 Membrane-attachment and polymerisation-promoting switch WSWS_00481 PF00091 Tubulin/FtsZ family, GTPase domain WSWS_00481 PF12327 FtsZ family, C-terminal domain WSWS_00482 PF04472 Cell division protein SepF WSWS_00485 PF05103 DivIVA protein WSWS_00486 PF08264 Anticodon-binding domain of tRNA WSWS_00486 PF00133 tRNA synthetases class I (I, L, M and V) WSWS_00486 PF06827 Zinc finger found in FPG and IleRS WSWS_00488 PF00005 ABC transporter WSWS_00489 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00490 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00491 PF00817 impB/mucB/samB family WSWS_00491 PF11799 impB/mucB/samB family C-terminal domain WSWS_00492 PF02272 DHHA1 domain WSWS_00492 PF01368 DHH family WSWS_00493 PF00270 DEAD/DEAH box helicase WSWS_00493 PF00271 Helicase conserved C-terminal domain WSWS_00494 PF00557 Metallopeptidase family M24 WSWS_00495 PF01487 Type I 3-dehydroquinase WSWS_00497 PF08439 Oligopeptidase F WSWS_00497 PF01432 Peptidase family M3 WSWS_00498 PF17384 RimP C-terminal SH3 domain WSWS_00498 PF02576 RimP N-terminal domain WSWS_00499 PF00575 S1 RNA binding domain WSWS_00499 PF08529 NusA N-terminal domain WSWS_00499 PF13184 NusA-like KH domain WSWS_00500 PF04296 Protein of unknown function (DUF448) WSWS_00501 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family WSWS_00502 PF04760 Translation initiation factor IF-2, N-terminal region WSWS_00502 PF11987 Translation-initiation factor 2 WSWS_00502 PF00009 Elongation factor Tu GTP binding domain WSWS_00503 PF02033 Ribosome-binding factor A WSWS_00504 PF17783 CvfB-like winged helix domain WSWS_00504 PF13509 S1 domain WSWS_00505 PF02899 Phage integrase, N-terminal SAM-like domain WSWS_00505 PF00589 Phage integrase family WSWS_00506 PF00583 Acetyltransferase (GNAT) family WSWS_00507 PF02616 Segregation and condensation protein ScpA WSWS_00508 PF04079 Segregation and condensation complex subunit ScpB WSWS_00509 PF00849 RNA pseudouridylate synthase WSWS_00509 PF01479 S4 domain WSWS_00510 PF12822 ECF transporter, substrate-specific component WSWS_00512 PF00271 Helicase conserved C-terminal domain WSWS_00512 PF00270 DEAD/DEAH box helicase WSWS_00514 PF02224 Cytidylate kinase WSWS_00515 PF00575 S1 RNA binding domain WSWS_00516 PF01926 50S ribosome-binding GTPase WSWS_00516 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WSWS_00517 PF00216 Bacterial DNA-binding protein WSWS_00520 PF01327 Polypeptide deformylase WSWS_00521 PF05256 Uncharacterised protein family (UPF0223) WSWS_00522 PF00459 Inositol monophosphatase family WSWS_00524 PF01098 Cell cycle protein WSWS_00525 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) WSWS_00527 PF01467 Cytidylyltransferase-like WSWS_00528 PF05362 Lon protease (S16) C-terminal proteolytic domain WSWS_00528 PF13180 PDZ domain WSWS_00530 PF01116 Fructose-bisphosphate aldolase class-II WSWS_00533 PF01713 Smr domain WSWS_00533 PF00488 MutS domain V WSWS_00535 PF13419 Haloacid dehalogenase-like hydrolase WSWS_00536 PF01177 Asp/Glu/Hydantoin racemase WSWS_00537 PF01725 Ham1 family WSWS_00539 PF02875 Mur ligase family, glutamate ligase domain WSWS_00539 PF08245 Mur ligase middle domain WSWS_00540 PF01725 Ham1 family WSWS_00541 PF02875 Mur ligase family, glutamate ligase domain WSWS_00541 PF08245 Mur ligase middle domain WSWS_00543 PF05746 DALR anticodon binding domain WSWS_00543 PF00750 tRNA synthetases class I (R) WSWS_00543 PF03485 Arginyl tRNA synthetase N terminal domain WSWS_00544 PF07702 UTRA domain WSWS_00544 PF00392 Bacterial regulatory proteins, gntR family WSWS_00545 PF02378 Phosphotransferase system, EIIC WSWS_00545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_00545 PF00367 phosphotransferase system, EIIB WSWS_00546 PF00367 phosphotransferase system, EIIB WSWS_00546 PF02378 Phosphotransferase system, EIIC WSWS_00546 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_00547 PF16657 Maltogenic Amylase, C-terminal domain WSWS_00547 PF00128 Alpha amylase, catalytic domain WSWS_00550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WSWS_00550 PF12833 Helix-turn-helix domain WSWS_00550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WSWS_00550 PF02805 Metal binding domain of Ada WSWS_00552 PF01545 Cation efflux family WSWS_00553 PF07690 Major Facilitator Superfamily WSWS_00555 PF03551 Transcriptional regulator PadR-like family WSWS_00559 PF00005 ABC transporter WSWS_00560 PF03649 Uncharacterised protein family (UPF0014) WSWS_00562 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WSWS_00563 PF00535 Glycosyl transferase family 2 WSWS_00564 PF00535 Glycosyl transferase family 2 WSWS_00565 PF01476 LysM domain WSWS_00565 PF00005 ABC transporter WSWS_00566 PF01061 ABC-2 type transporter WSWS_00569 PF08543 Phosphomethylpyrimidine kinase WSWS_00571 PF07690 Major Facilitator Superfamily WSWS_00572 PF00912 Transglycosylase WSWS_00572 PF00905 Penicillin binding protein transpeptidase domain WSWS_00573 PF03838 Recombination protein U WSWS_00574 PF06908 YspA SLOG family WSWS_00575 PF05103 DivIVA protein WSWS_00576 PF01027 Inhibitor of apoptosis-promoting Bax1 WSWS_00577 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WSWS_00577 PF00476 DNA polymerase family A WSWS_00577 PF01367 5'-3' exonuclease, C-terminal SAM fold WSWS_00578 PF12706 Beta-lactamase superfamily domain WSWS_00578 PF00753 Metallo-beta-lactamase superfamily WSWS_00579 PF01368 DHH family WSWS_00579 PF02272 DHHA1 domain WSWS_00579 PF17768 RecJ OB domain WSWS_00579 PF10141 Single-strand DNA-specific exonuclease, C terminal domain WSWS_00580 PF00156 Phosphoribosyl transferase domain WSWS_00581 PF03129 Anticodon binding domain WSWS_00581 PF13393 Histidyl-tRNA synthetase WSWS_00582 PF00152 tRNA synthetases class II (D, K and N) WSWS_00582 PF01336 OB-fold nucleic acid binding domain WSWS_00582 PF02938 GAD domain WSWS_00583 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WSWS_00583 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WSWS_00585 PF00300 Histidine phosphatase superfamily (branch 1) WSWS_00587 PF00334 Nucleoside diphosphate kinase WSWS_00588 PF01709 Transcriptional regulator WSWS_00589 PF00465 Iron-containing alcohol dehydrogenase WSWS_00590 PF12849 PBP superfamily domain WSWS_00591 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_00592 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WSWS_00592 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WSWS_00594 PF01070 FMN-dependent dehydrogenase WSWS_00595 PF08544 GHMP kinases C terminal WSWS_00595 PF00288 GHMP kinases N terminal domain WSWS_00597 PF08544 GHMP kinases C terminal WSWS_00597 PF00288 GHMP kinases N terminal domain WSWS_00597 PF10509 Galactokinase galactose-binding signature WSWS_00598 PF04851 Type III restriction enzyme, res subunit WSWS_00598 PF00929 Exonuclease WSWS_00598 PF13307 Helicase C-terminal domain WSWS_00600 PF00152 tRNA synthetases class II (D, K and N) WSWS_00600 PF01336 OB-fold nucleic acid binding domain WSWS_00603 PF12627 Probable RNA and SrmB- binding site of polymerase A WSWS_00603 PF13735 tRNA nucleotidyltransferase domain 2 putative WSWS_00603 PF01743 Poly A polymerase head domain WSWS_00604 PF00005 ABC transporter WSWS_00604 PF16326 ABC transporter C-terminal domain WSWS_00604 PF12848 ABC transporter WSWS_00605 PF00186 Dihydrofolate reductase WSWS_00607 PF07733 Bacterial DNA polymerase III alpha NTPase domain WSWS_00607 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WSWS_00607 PF01336 OB-fold nucleic acid binding domain WSWS_00607 PF14579 Helix-hairpin-helix motif WSWS_00607 PF02811 PHP domain WSWS_00609 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain WSWS_00609 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WSWS_00609 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal WSWS_00610 PF07690 Major Facilitator Superfamily WSWS_00611 PF00072 Response regulator receiver domain WSWS_00611 PF00486 Transcriptional regulatory protein, C terminal WSWS_00612 PF00512 His Kinase A (phospho-acceptor) domain WSWS_00612 PF16736 Single Cache-like WSWS_00612 PF00989 PAS fold WSWS_00612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00613 PF00485 Phosphoribulokinase / Uridine kinase family WSWS_00614 PF05343 M42 glutamyl aminopeptidase WSWS_00615 PF14794 Domain of unknown function (DUF4479) WSWS_00615 PF01588 Putative tRNA binding domain WSWS_00619 PF01225 Mur ligase family, catalytic domain WSWS_00619 PF08245 Mur ligase middle domain WSWS_00619 PF02875 Mur ligase family, glutamate ligase domain WSWS_00620 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WSWS_00620 PF06827 Zinc finger found in FPG and IleRS WSWS_00620 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WSWS_00621 PF01121 Dephospho-CoA kinase WSWS_00623 PF07319 Primosomal protein DnaI N-terminus WSWS_00623 PF01695 IstB-like ATP binding protein WSWS_00626 PF00072 Response regulator receiver domain WSWS_00626 PF00486 Transcriptional regulatory protein, C terminal WSWS_00627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00627 PF18719 ArlS sensor domain WSWS_00627 PF00512 His Kinase A (phospho-acceptor) domain WSWS_00628 PF00085 Thioredoxin WSWS_00631 PF02397 Bacterial sugar transferase WSWS_00632 PF01165 Ribosomal protein S21 WSWS_00633 PF09424 Yqey-like protein WSWS_00634 PF02562 PhoH-like protein WSWS_00635 PF02130 Uncharacterized protein family UPF0054 WSWS_00636 PF01219 Prokaryotic diacylglycerol kinase WSWS_00637 PF07650 KH domain WSWS_00637 PF01926 50S ribosome-binding GTPase WSWS_00638 PF06574 FAD synthetase WSWS_00638 PF01687 Riboflavin kinase WSWS_00640 PF03932 CutC family WSWS_00644 PF02645 Uncharacterised protein, DegV family COG1307 WSWS_00645 PF02645 Uncharacterised protein, DegV family COG1307 WSWS_00646 PF13472 GDSL-like Lipase/Acylhydrolase family WSWS_00648 PF06855 YozE SAM-like fold WSWS_00650 PF07859 alpha/beta hydrolase fold WSWS_00656 PF00106 short chain dehydrogenase WSWS_00658 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00659 PF04069 Substrate binding domain of ABC-type glycine betaine transport system WSWS_00660 PF00571 CBS domain WSWS_00660 PF00005 ABC transporter WSWS_00661 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00662 PF01926 50S ribosome-binding GTPase WSWS_00663 PF01351 Ribonuclease HII WSWS_00664 PF02481 DNA recombination-mediator protein A WSWS_00665 PF01131 DNA topoisomerase WSWS_00665 PF01751 Toprim domain WSWS_00665 PF01396 Topoisomerase DNA binding C4 zinc finger WSWS_00666 PF02899 Phage integrase, N-terminal SAM-like domain WSWS_00666 PF00589 Phage integrase family WSWS_00667 PF01263 Aldose 1-epimerase WSWS_00668 PF02660 Glycerol-3-phosphate acyltransferase WSWS_00669 PF00986 DNA gyrase B subunit, carboxyl terminus WSWS_00669 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00669 PF01751 Toprim domain WSWS_00669 PF00204 DNA gyrase B WSWS_00670 PF03989 DNA gyrase C-terminal domain, beta-propeller WSWS_00670 PF00521 DNA gyrase/topoisomerase IV, subunit A WSWS_00671 PF00009 Elongation factor Tu GTP binding domain WSWS_00671 PF00679 Elongation factor G C-terminus WSWS_00671 PF06421 GTP-binding protein LepA C-terminus WSWS_00672 PF02926 THUMP domain WSWS_00672 PF01170 Putative RNA methylase family UPF0020 WSWS_00673 PF13361 UvrD-like helicase C-terminal domain WSWS_00673 PF00580 UvrD/REP helicase N-terminal domain WSWS_00674 PF12826 Helix-hairpin-helix motif WSWS_00674 PF01653 NAD-dependent DNA ligase adenylation domain WSWS_00674 PF00533 BRCA1 C Terminus (BRCT) domain WSWS_00674 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WSWS_00674 PF03120 NAD-dependent DNA ligase OB-fold domain WSWS_00676 PF01810 LysE type translocator WSWS_00678 PF00271 Helicase conserved C-terminal domain WSWS_00678 PF04851 Type III restriction enzyme, res subunit WSWS_00678 PF02151 UvrB/uvrC motif WSWS_00678 PF17757 UvrB interaction domain WSWS_00678 PF12344 Ultra-violet resistance protein B WSWS_00680 PF01230 HIT domain WSWS_00681 PF00005 ABC transporter WSWS_00683 PF02390 Putative methyltransferase WSWS_00688 PF07690 Major Facilitator Superfamily WSWS_00689 PF03099 Biotin/lipoate A/B protein ligase family WSWS_00689 PF10437 Bacterial lipoate protein ligase C-terminus WSWS_00690 PF00676 Dehydrogenase E1 component WSWS_00691 PF02779 Transketolase, pyrimidine binding domain WSWS_00691 PF02780 Transketolase, C-terminal domain WSWS_00692 PF02817 e3 binding domain WSWS_00692 PF00364 Biotin-requiring enzyme WSWS_00692 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WSWS_00693 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_00693 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_00695 PF12697 Alpha/beta hydrolase family WSWS_00696 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WSWS_00698 PF03816 Cell envelope-related transcriptional attenuator domain WSWS_00703 PF13520 Amino acid permease WSWS_00705 PF07238 PilZ domain WSWS_00705 PF00535 Glycosyl transferase family 2 WSWS_00705 PF03552 Cellulose synthase WSWS_00709 PF00005 ABC transporter WSWS_00710 PF02687 FtsX-like permease family WSWS_00711 PF00196 Bacterial regulatory proteins, luxR family WSWS_00711 PF00072 Response regulator receiver domain WSWS_00712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00712 PF07730 Histidine kinase WSWS_00713 PF03176 MMPL family WSWS_00714 PF13411 MerR HTH family regulatory protein WSWS_00716 PF07690 Major Facilitator Superfamily WSWS_00717 PF00248 Aldo/keto reductase family WSWS_00722 PF03358 NADPH-dependent FMN reductase WSWS_00724 PF00106 short chain dehydrogenase WSWS_00726 PF02627 Carboxymuconolactone decarboxylase family WSWS_00727 PF13411 MerR HTH family regulatory protein WSWS_00730 PF14552 Tautomerase enzyme WSWS_00731 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WSWS_00731 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WSWS_00732 PF00294 pfkB family carbohydrate kinase WSWS_00733 PF00455 DeoR C terminal sensor domain WSWS_00733 PF08220 DeoR-like helix-turn-helix domain WSWS_00734 PF00440 Bacterial regulatory proteins, tetR family WSWS_00736 PF00005 ABC transporter WSWS_00738 PF00501 AMP-binding enzyme WSWS_00738 PF13193 AMP-binding enzyme C-terminal domain WSWS_00739 PF09084 NMT1/THI5 like WSWS_00740 PF00005 ABC transporter WSWS_00741 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00742 PF00501 AMP-binding enzyme WSWS_00742 PF13193 AMP-binding enzyme C-terminal domain WSWS_00743 PF00293 NUDIX domain WSWS_00745 PF02580 D-Tyr-tRNA(Tyr) deacylase WSWS_00746 PF04607 Region found in RelA / SpoT proteins WSWS_00746 PF02824 TGS domain WSWS_00746 PF13291 ACT domain WSWS_00747 PF03979 Sigma-70 factor, region 1.1 WSWS_00747 PF00140 Sigma-70 factor, region 1.2 WSWS_00747 PF04542 Sigma-70 region 2 WSWS_00747 PF04539 Sigma-70 region 3 WSWS_00747 PF04545 Sigma-70, region 4 WSWS_00748 PF10410 DnaB-helicase binding domain of primase WSWS_00748 PF08275 DNA primase catalytic core, N-terminal domain WSWS_00748 PF01807 CHC2 zinc finger WSWS_00750 PF03060 Nitronate monooxygenase WSWS_00751 PF01144 Coenzyme A transferase WSWS_00752 PF03466 LysR substrate binding domain WSWS_00752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WSWS_00753 PF03412 Peptidase C39 family WSWS_00753 PF00005 ABC transporter WSWS_00753 PF00664 ABC transporter transmembrane region WSWS_00754 PF02378 Phosphotransferase system, EIIC WSWS_00755 PF00232 Glycosyl hydrolase family 1 WSWS_00756 PF07702 UTRA domain WSWS_00756 PF00392 Bacterial regulatory proteins, gntR family WSWS_00758 PF01380 SIS domain WSWS_00759 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WSWS_00760 PF01638 HxlR-like helix-turn-helix WSWS_00763 PF12161 HsdM N-terminal domain WSWS_00763 PF02384 N-6 DNA Methylase WSWS_00764 PF18766 SWI2/SNF2 ATPase WSWS_00764 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WSWS_00764 PF12008 Type I restriction and modification enzyme - subunit R C terminal WSWS_00765 PF00009 Elongation factor Tu GTP binding domain WSWS_00765 PF00679 Elongation factor G C-terminus WSWS_00765 PF06421 GTP-binding protein LepA C-terminus WSWS_00766 PF00679 Elongation factor G C-terminus WSWS_00766 PF06421 GTP-binding protein LepA C-terminus WSWS_00766 PF00009 Elongation factor Tu GTP binding domain WSWS_00767 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain WSWS_00767 PF04616 Glycosyl hydrolases family 43 WSWS_00770 PF02449 Beta-galactosidase WSWS_00770 PF08533 Beta-galactosidase C-terminal domain WSWS_00770 PF08532 Beta-galactosidase trimerisation domain WSWS_00773 PF06738 Putative threonine/serine exporter WSWS_00774 PF01546 Peptidase family M20/M25/M40 WSWS_00774 PF07687 Peptidase dimerisation domain WSWS_00775 PF13419 Haloacid dehalogenase-like hydrolase WSWS_00776 PF03636 Glycosyl hydrolase family 65, N-terminal domain WSWS_00776 PF03633 Glycosyl hydrolase family 65, C-terminal domain WSWS_00776 PF03632 Glycosyl hydrolase family 65 central catalytic domain WSWS_00777 PF00128 Alpha amylase, catalytic domain WSWS_00777 PF02903 Alpha amylase, N-terminal ig-like domain WSWS_00779 PF00356 Bacterial regulatory proteins, lacI family WSWS_00780 PF13520 Amino acid permease WSWS_00783 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00784 PF00571 CBS domain WSWS_00784 PF00005 ABC transporter WSWS_00786 PF01926 50S ribosome-binding GTPase WSWS_00787 PF07724 AAA domain (Cdc48 subfamily) WSWS_00787 PF10431 C-terminal, D2-small domain, of ClpB protein WSWS_00787 PF06689 ClpX C4-type zinc finger WSWS_00788 PF05697 Bacterial trigger factor protein (TF) WSWS_00788 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WSWS_00788 PF05698 Bacterial trigger factor protein (TF) C-terminus WSWS_00789 PF14010 Phosphoenolpyruvate carboxylase WSWS_00790 PF03143 Elongation factor Tu C-terminal domain WSWS_00790 PF03144 Elongation factor Tu domain 2 WSWS_00790 PF00009 Elongation factor Tu GTP binding domain WSWS_00792 PF17770 Ribonuclease J C-terminal domain WSWS_00792 PF00753 Metallo-beta-lactamase superfamily WSWS_00792 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WSWS_00793 PF07676 WD40-like Beta Propeller Repeat WSWS_00793 PF00326 Prolyl oligopeptidase family WSWS_00794 PF01649 Ribosomal protein S20 WSWS_00795 PF00312 Ribosomal protein S15 WSWS_00796 PF06144 DNA polymerase III, delta subunit WSWS_00798 PF10531 SLBB domain WSWS_00804 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WSWS_00805 PF01510 N-acetylmuramoyl-L-alanine amidase WSWS_00805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WSWS_00805 PF13457 GW (Gly-Tryp) dipeptide domain WSWS_00806 PF05257 CHAP domain WSWS_00806 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WSWS_00809 PF07690 Major Facilitator Superfamily WSWS_00810 PF00083 Sugar (and other) transporter WSWS_00811 PF00877 NlpC/P60 family WSWS_00812 PF00291 Pyridoxal-phosphate dependent enzyme WSWS_00813 PF01205 Uncharacterized protein family UPF0029 WSWS_00813 PF09186 Domain of unknown function (DUF1949) WSWS_00814 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WSWS_00814 PF17770 Ribonuclease J C-terminal domain WSWS_00814 PF00753 Metallo-beta-lactamase superfamily WSWS_00818 PF00248 Aldo/keto reductase family WSWS_00819 PF03672 Uncharacterised protein family (UPF0154) WSWS_00820 PF05979 Bacterial protein of unknown function (DUF896) WSWS_00821 PF01726 LexA DNA binding domain WSWS_00821 PF00717 Peptidase S24-like WSWS_00823 PF07687 Peptidase dimerisation domain WSWS_00823 PF01546 Peptidase family M20/M25/M40 WSWS_00824 PF01784 NIF3 (NGG1p interacting factor 3) WSWS_00825 PF04816 tRNA (adenine(22)-N(1))-methyltransferase WSWS_00826 PF00781 Diacylglycerol kinase catalytic domain WSWS_00827 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_00828 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00829 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_00830 PF00005 ABC transporter WSWS_00830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WSWS_00831 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WSWS_00831 PF00005 ABC transporter WSWS_00832 PF01625 Peptide methionine sulfoxide reductase WSWS_00833 PF03180 NLPA lipoprotein WSWS_00834 PF02833 DHHA2 domain WSWS_00834 PF01368 DHH family WSWS_00835 PF00253 Ribosomal protein S14p/S29e WSWS_00836 PF00471 Ribosomal protein L33 WSWS_00837 PF01765 Ribosome recycling factor WSWS_00838 PF00696 Amino acid kinase family WSWS_00839 PF00889 Elongation factor TS WSWS_00841 PF00318 Ribosomal protein S2 WSWS_00842 PF01541 GIY-YIG catalytic domain WSWS_00843 PF05175 Methyltransferase small domain WSWS_00844 PF01553 Acyltransferase WSWS_00845 PF09269 Domain of unknown function (DUF1967) WSWS_00845 PF01926 50S ribosome-binding GTPase WSWS_00845 PF01018 GTP1/OBG WSWS_00846 PF01541 GIY-YIG catalytic domain WSWS_00846 PF08459 UvrC Helix-hairpin-helix N-terminal WSWS_00846 PF02151 UvrB/uvrC motif WSWS_00848 PF00005 ABC transporter WSWS_00851 PF17854 FtsK alpha domain WSWS_00851 PF09397 Ftsk gamma domain WSWS_00851 PF01580 FtsK/SpoIIIE family WSWS_00852 PF00588 SpoU rRNA Methylase family WSWS_00853 PF01594 AI-2E family transporter WSWS_00854 PF10282 Lactonase, 7-bladed beta-propeller WSWS_00856 PF00155 Aminotransferase class I and II WSWS_00857 PF02774 Semialdehyde dehydrogenase, dimerisation domain WSWS_00857 PF01118 Semialdehyde dehydrogenase, NAD binding domain WSWS_00858 PF01113 Dihydrodipicolinate reductase, N-terminus WSWS_00858 PF05173 Dihydrodipicolinate reductase, C-terminus WSWS_00859 PF00701 Dihydrodipicolinate synthetase family WSWS_00860 PF07687 Peptidase dimerisation domain WSWS_00860 PF01546 Peptidase family M20/M25/M40 WSWS_00861 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal WSWS_00861 PF00132 Bacterial transferase hexapeptide (six repeats) WSWS_00861 PF14602 Hexapeptide repeat of succinyl-transferase WSWS_00862 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WSWS_00862 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WSWS_00863 PF01168 Alanine racemase, N-terminal domain WSWS_00863 PF00842 Alanine racemase, C-terminal domain WSWS_00864 PF00696 Amino acid kinase family WSWS_00864 PF13840 ACT domain WSWS_00865 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_00865 PF00107 Zinc-binding dehydrogenase WSWS_00867 PF01906 Putative heavy-metal-binding WSWS_00874 PF01741 Large-conductance mechanosensitive channel, MscL WSWS_00875 PF01712 Deoxynucleoside kinase WSWS_00877 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WSWS_00877 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WSWS_00878 PF01361 Tautomerase enzyme WSWS_00879 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WSWS_00879 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WSWS_00880 PF01245 Ribosomal protein L19 WSWS_00882 PF00154 recA bacterial DNA recombination protein WSWS_00883 PF18146 Damage-inducible protein CinA KH domain WSWS_00883 PF02464 Competence-damaged protein WSWS_00883 PF00994 Probable molybdopterin binding domain WSWS_00886 PF07690 Major Facilitator Superfamily WSWS_00887 PF00849 RNA pseudouridylate synthase WSWS_00888 PF01513 ATP-NAD kinase WSWS_00889 PF04607 Region found in RelA / SpoT proteins WSWS_00890 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WSWS_00890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WSWS_00891 PF03275 UDP-galactopyranose mutase WSWS_00892 PF00535 Glycosyl transferase family 2 WSWS_00893 PF02637 GatB domain WSWS_00893 PF02934 GatB/GatE catalytic domain WSWS_00894 PF01425 Amidase WSWS_00895 PF02686 Glu-tRNAGln amidotransferase C subunit WSWS_00896 PF17126 RsmF rRNA methyltransferase first C-terminal domain WSWS_00896 PF01189 16S rRNA methyltransferase RsmB/F WSWS_00896 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF WSWS_00899 PF00248 Aldo/keto reductase family WSWS_00900 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WSWS_00900 PF14572 Phosphoribosyl synthetase-associated domain WSWS_00901 PF01180 Dihydroorotate dehydrogenase WSWS_00903 PF00005 ABC transporter WSWS_00903 PF12558 ATP-binding cassette cobalt transporter WSWS_00906 PF03577 Peptidase family C69 WSWS_00907 PF02096 60Kd inner membrane protein WSWS_00909 PF00857 Isochorismatase family WSWS_00910 PF13382 Adenine deaminase C-terminal domain WSWS_00910 PF01979 Amidohydrolase family WSWS_00911 PF00478 IMP dehydrogenase / GMP reductase domain WSWS_00911 PF00571 CBS domain WSWS_00912 PF01738 Dienelactone hydrolase family WSWS_00913 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WSWS_00915 PF01709 Transcriptional regulator WSWS_00917 PF04226 Transglycosylase associated protein WSWS_00919 PF00563 EAL domain WSWS_00919 PF13426 PAS domain WSWS_00919 PF00990 Diguanylate cyclase, GGDEF domain WSWS_00920 PF00293 NUDIX domain WSWS_00927 PF01464 Transglycosylase SLT domain WSWS_00941 PF03167 Uracil DNA glycosylase superfamily WSWS_00944 PF00132 Bacterial transferase hexapeptide (six repeats) WSWS_00944 PF12464 Maltose acetyltransferase WSWS_00951 PF03837 RecT family WSWS_00962 PF01381 Helix-turn-helix WSWS_00972 PF00563 EAL domain WSWS_00972 PF13426 PAS domain WSWS_00972 PF00990 Diguanylate cyclase, GGDEF domain WSWS_00974 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WSWS_00976 PF00535 Glycosyl transferase family 2 WSWS_00979 PF00990 Diguanylate cyclase, GGDEF domain WSWS_00979 PF17156 Gammaproteobacterial periplasmic sensor domain WSWS_00980 PF00512 His Kinase A (phospho-acceptor) domain WSWS_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_00980 PF18719 ArlS sensor domain WSWS_00981 PF00072 Response regulator receiver domain WSWS_00981 PF00486 Transcriptional regulatory protein, C terminal WSWS_00982 PF00970 Oxidoreductase FAD-binding domain WSWS_00982 PF00175 Oxidoreductase NAD-binding domain WSWS_00982 PF00042 Globin WSWS_00984 PF00005 ABC transporter WSWS_00984 PF13732 Domain of unknown function (DUF4162) WSWS_00988 PF00155 Aminotransferase class I and II WSWS_00989 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WSWS_00989 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WSWS_00989 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WSWS_00989 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WSWS_00992 PF00005 ABC transporter WSWS_00992 PF13732 Domain of unknown function (DUF4162) WSWS_00993 PF10458 Valyl tRNA synthetase tRNA binding arm WSWS_00993 PF08264 Anticodon-binding domain of tRNA WSWS_00993 PF00133 tRNA synthetases class I (I, L, M and V) WSWS_00994 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain WSWS_00994 PF13538 UvrD-like helicase C-terminal domain WSWS_00994 PF14490 Helix-hairpin-helix containing domain WSWS_00998 PF03061 Thioesterase superfamily WSWS_00999 PF00106 short chain dehydrogenase WSWS_01000 PF01145 SPFH domain / Band 7 family WSWS_01005 PF04226 Transglycosylase associated protein WSWS_01006 PF00886 Ribosomal protein S16 WSWS_01007 PF03009 Glycerophosphoryl diester phosphodiesterase family WSWS_01008 PF01773 Na+ dependent nucleoside transporter N-terminus WSWS_01008 PF07662 Na+ dependent nucleoside transporter C-terminus WSWS_01009 PF13520 Amino acid permease WSWS_01010 PF04085 rod shape-determining protein MreC WSWS_01012 PF04002 RadC-like JAB domain WSWS_01015 PF01048 Phosphorylase superfamily WSWS_01017 PF00293 NUDIX domain WSWS_01018 PF00313 'Cold-shock' DNA-binding domain WSWS_01021 PF02608 ABC transporter substrate-binding protein PnrA-like WSWS_01022 PF00005 ABC transporter WSWS_01022 PF00664 ABC transporter transmembrane region WSWS_01023 PF00664 ABC transporter transmembrane region WSWS_01023 PF00005 ABC transporter WSWS_01024 PF01047 MarR family WSWS_01025 PF12822 ECF transporter, substrate-specific component WSWS_01026 PF00849 RNA pseudouridylate synthase WSWS_01026 PF01479 S4 domain WSWS_01027 PF00107 Zinc-binding dehydrogenase WSWS_01028 PF00155 Aminotransferase class I and II WSWS_01030 PF13302 Acetyltransferase (GNAT) domain WSWS_01034 PF00005 ABC transporter WSWS_01036 PF01047 MarR family WSWS_01037 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WSWS_01037 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WSWS_01039 PF00480 ROK family WSWS_01040 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_01042 PF03180 NLPA lipoprotein WSWS_01043 PF07687 Peptidase dimerisation domain WSWS_01043 PF01546 Peptidase family M20/M25/M40 WSWS_01045 PF13802 Galactose mutarotase-like WSWS_01045 PF01055 Glycosyl hydrolases family 31 WSWS_01048 PF00248 Aldo/keto reductase family WSWS_01050 PF00083 Sugar (and other) transporter WSWS_01051 PF11762 L-arabinose isomerase C-terminal domain WSWS_01051 PF02610 L-arabinose isomerase WSWS_01052 PF00596 Class II Aldolase and Adducin N-terminal domain WSWS_01054 PF00392 Bacterial regulatory proteins, gntR family WSWS_01055 PF00480 ROK family WSWS_01056 PF08244 Glycosyl hydrolases family 32 C terminal WSWS_01056 PF00251 Glycosyl hydrolases family 32 N-terminal domain WSWS_01057 PF02378 Phosphotransferase system, EIIC WSWS_01057 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_01057 PF00367 phosphotransferase system, EIIB WSWS_01058 PF13407 Periplasmic binding protein domain WSWS_01058 PF00356 Bacterial regulatory proteins, lacI family WSWS_01060 PF13536 Putative multidrug resistance efflux transporter WSWS_01061 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_01061 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WSWS_01062 PF01380 SIS domain WSWS_01063 PF00909 Ammonium Transporter Family WSWS_01064 PF08239 Bacterial SH3 domain WSWS_01064 PF01520 N-acetylmuramoyl-L-alanine amidase WSWS_01066 PF01384 Phosphate transporter family WSWS_01067 PF00205 Thiamine pyrophosphate enzyme, central domain WSWS_01067 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WSWS_01067 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WSWS_01069 PF01566 Natural resistance-associated macrophage protein WSWS_01070 PF07274 Protein of unknown function (DUF1440) WSWS_01072 PF01458 Uncharacterized protein family (UPF0051) WSWS_01074 PF00266 Aminotransferase class-V WSWS_01075 PF01458 Uncharacterized protein family (UPF0051) WSWS_01076 PF00005 ABC transporter WSWS_01078 PF03477 ATP cone domain WSWS_01078 PF13597 Anaerobic ribonucleoside-triphosphate reductase WSWS_01079 PF00462 Glutaredoxin WSWS_01081 PF00009 Elongation factor Tu GTP binding domain WSWS_01081 PF16658 Class II release factor RF3, C-terminal domain WSWS_01081 PF03144 Elongation factor Tu domain 2 WSWS_01082 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal WSWS_01082 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal WSWS_01083 PF04127 DNA / pantothenate metabolism flavoprotein WSWS_01083 PF02441 Flavoprotein WSWS_01086 PF01053 Cys/Met metabolism PLP-dependent enzyme WSWS_01088 PF00684 DnaJ central domain WSWS_01088 PF00226 DnaJ domain WSWS_01088 PF01556 DnaJ C terminal domain WSWS_01089 PF00012 Hsp70 protein WSWS_01090 PF01025 GrpE WSWS_01091 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding WSWS_01091 PF01628 HrcA protein C terminal domain WSWS_01092 PF01910 Thiamine-binding protein WSWS_01095 PF00440 Bacterial regulatory proteins, tetR family WSWS_01097 PF13476 AAA domain WSWS_01100 PF01741 Large-conductance mechanosensitive channel, MscL WSWS_01101 PF01066 CDP-alcohol phosphatidyltransferase WSWS_01102 PF13464 Domain of unknown function (DUF4115) WSWS_01103 PF00675 Insulinase (Peptidase family M16) WSWS_01103 PF05193 Peptidase M16 inactive domain WSWS_01104 PF05193 Peptidase M16 inactive domain WSWS_01105 PF13396 Phospholipase_D-nuclease N-terminal WSWS_01105 PF13091 PLD-like domain WSWS_01106 PF00884 Sulfatase WSWS_01109 PF13439 Glycosyltransferase Family 4 WSWS_01109 PF00534 Glycosyl transferases group 1 WSWS_01110 PF13439 Glycosyltransferase Family 4 WSWS_01110 PF00534 Glycosyl transferases group 1 WSWS_01111 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase WSWS_01112 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WSWS_01112 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WSWS_01113 PF01966 HD domain WSWS_01113 PF01336 OB-fold nucleic acid binding domain WSWS_01114 PF02646 RmuC family WSWS_01115 PF06133 Control of competence regulator ComK, YlbF/YmcA WSWS_01116 PF00905 Penicillin binding protein transpeptidase domain WSWS_01116 PF00912 Transglycosylase WSWS_01117 PF01316 Arginine repressor, DNA binding domain WSWS_01117 PF02863 Arginine repressor, C-terminal domain WSWS_01118 PF00009 Elongation factor Tu GTP binding domain WSWS_01118 PF06421 GTP-binding protein LepA C-terminus WSWS_01118 PF03144 Elongation factor Tu domain 2 WSWS_01118 PF00679 Elongation factor G C-terminus WSWS_01119 PF05958 tRNA (Uracil-5-)-methyltransferase WSWS_01119 PF01938 TRAM domain WSWS_01120 PF05816 Toxic anion resistance protein (TelA) WSWS_01124 PF00324 Amino acid permease WSWS_01125 PF05532 CsbD-like WSWS_01126 PF01197 Ribosomal protein L31 WSWS_01128 PF00156 Phosphoribosyl transferase domain WSWS_01129 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WSWS_01130 PF01180 Dihydroorotate dehydrogenase WSWS_01131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSWS_01131 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSWS_01131 PF02142 MGS-like domain WSWS_01132 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WSWS_01132 PF00117 Glutamine amidotransferase class-I WSWS_01133 PF01979 Amidohydrolase family WSWS_01134 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WSWS_01134 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WSWS_01136 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WSWS_01136 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WSWS_01136 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WSWS_01136 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WSWS_01137 PF07949 YbbR-like protein WSWS_01138 PF02457 DisA bacterial checkpoint controller nucleotide-binding WSWS_01139 PF00999 Sodium/hydrogen exchanger family WSWS_01140 PF01565 FAD binding domain WSWS_01140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WSWS_01141 PF07733 Bacterial DNA polymerase III alpha NTPase domain WSWS_01141 PF14579 Helix-hairpin-helix motif WSWS_01141 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WSWS_01141 PF00929 Exonuclease WSWS_01141 PF11490 DNA polymerase III polC-type N-terminus II WSWS_01141 PF02811 PHP domain WSWS_01141 PF14480 DNA polymerase III polC-type N-terminus I WSWS_01143 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WSWS_01144 PF00550 Phosphopantetheine attachment site WSWS_01145 PF02504 Fatty acid synthesis protein WSWS_01146 PF17191 RecG wedge domain WSWS_01146 PF00270 DEAD/DEAH box helicase WSWS_01146 PF00271 Helicase conserved C-terminal domain WSWS_01147 PF13684 Dihydroxyacetone kinase family WSWS_01147 PF02734 DAK2 domain WSWS_01148 PF03780 Asp23 family, cell envelope-related function WSWS_01149 PF00830 Ribosomal L28 family WSWS_01151 PF00834 Ribulose-phosphate 3 epimerase family WSWS_01152 PF03193 RsgA GTPase WSWS_01152 PF16745 RsgA N-terminal domain WSWS_01153 PF00069 Protein kinase domain WSWS_01153 PF03793 PASTA domain WSWS_01155 PF01029 NusB family WSWS_01155 PF01189 16S rRNA methyltransferase RsmB/F WSWS_01156 PF00551 Formyl transferase WSWS_01156 PF02911 Formyl transferase, C-terminal domain WSWS_01157 PF18074 Primosomal protein N C-terminal domain WSWS_01157 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WSWS_01157 PF04851 Type III restriction enzyme, res subunit WSWS_01157 PF00271 Helicase conserved C-terminal domain WSWS_01157 PF17764 3′ DNA-binding domain (3′BD) WSWS_01158 PF00871 Acetokinase family WSWS_01164 PF07963 Prokaryotic N-terminal methylation motif WSWS_01166 PF00437 Type II/IV secretion system protein WSWS_01167 PF00860 Permease family WSWS_01168 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WSWS_01168 PF02222 ATP-grasp domain WSWS_01169 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WSWS_01169 PF10135 Rod binding protein WSWS_01170 PF00005 ABC transporter WSWS_01170 PF00664 ABC transporter transmembrane region WSWS_01171 PF00664 ABC transporter transmembrane region WSWS_01171 PF00005 ABC transporter WSWS_01172 PF02322 Cytochrome bd terminal oxidase subunit II WSWS_01173 PF01654 Cytochrome bd terminal oxidase subunit I WSWS_01195 PF00575 S1 RNA binding domain WSWS_01196 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WSWS_01197 PF09335 SNARE associated Golgi protein WSWS_01199 PF01192 RNA polymerase Rpb6 WSWS_01200 PF00625 Guanylate kinase WSWS_01202 PF02463 RecF/RecN/SMC N terminal domain WSWS_01203 PF01316 Arginine repressor, DNA binding domain WSWS_01203 PF02863 Arginine repressor, C-terminal domain WSWS_01204 PF01479 S4 domain WSWS_01204 PF01728 FtsJ-like methyltransferase WSWS_01205 PF00348 Polyprenyl synthetase WSWS_01206 PF02609 Exonuclease VII small subunit WSWS_01207 PF13742 OB-fold nucleic acid binding domain WSWS_01207 PF02601 Exonuclease VII, large subunit WSWS_01208 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WSWS_01208 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WSWS_01210 PF12558 ATP-binding cassette cobalt transporter WSWS_01210 PF00005 ABC transporter WSWS_01211 PF07155 ECF-type riboflavin transporter, S component WSWS_01212 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase WSWS_01214 PF12848 ABC transporter WSWS_01214 PF16326 ABC transporter C-terminal domain WSWS_01214 PF00005 ABC transporter WSWS_01215 PF02629 CoA binding domain WSWS_01215 PF06971 Putative DNA-binding protein N-terminus WSWS_01216 PF00271 Helicase conserved C-terminal domain WSWS_01216 PF00270 DEAD/DEAH box helicase WSWS_01217 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WSWS_01219 PF05188 MutS domain II WSWS_01219 PF05192 MutS domain III WSWS_01219 PF05190 MutS family domain IV WSWS_01219 PF00488 MutS domain V WSWS_01219 PF01624 MutS domain I WSWS_01221 PF05636 HIGH Nucleotidyl Transferase WSWS_01222 PF01209 ubiE/COQ5 methyltransferase family WSWS_01224 PF01966 HD domain WSWS_01225 PF01467 Cytidylyltransferase-like WSWS_01227 PF01926 50S ribosome-binding GTPase WSWS_01230 PF00162 Phosphoglycerate kinase WSWS_01231 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WSWS_01231 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WSWS_01232 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_01232 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_01237 PF01223 DNA/RNA non-specific endonuclease WSWS_01239 PF00113 Enolase, C-terminal TIM barrel domain WSWS_01239 PF03952 Enolase, N-terminal domain WSWS_01240 PF00121 Triosephosphate isomerase WSWS_01241 PF00391 PEP-utilising enzyme, mobile domain WSWS_01241 PF05524 PEP-utilising enzyme, N-terminal WSWS_01241 PF02896 PEP-utilising enzyme, TIM barrel domain WSWS_01242 PF00381 PTS HPr component phosphorylation site WSWS_01244 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WSWS_01244 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WSWS_01245 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_01246 PF00483 Nucleotidyl transferase WSWS_01247 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WSWS_01247 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WSWS_01248 PF07475 HPr Serine kinase C-terminal domain WSWS_01248 PF02603 HPr Serine kinase N terminus WSWS_01249 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV WSWS_01250 PF00582 Universal stress protein family WSWS_01252 PF03764 Elongation factor G, domain IV WSWS_01252 PF14492 Elongation Factor G, domain II WSWS_01252 PF00679 Elongation factor G C-terminus WSWS_01252 PF03144 Elongation factor Tu domain 2 WSWS_01252 PF00009 Elongation factor Tu GTP binding domain WSWS_01253 PF00177 Ribosomal protein S7p/S5e WSWS_01254 PF00164 Ribosomal protein S12/S23 WSWS_01256 PF00453 Ribosomal protein L20 WSWS_01256 PF12949 HeH/LEM domain WSWS_01257 PF01632 Ribosomal protein L35 WSWS_01258 PF00707 Translation initiation factor IF-3, C-terminal domain WSWS_01258 PF05198 Translation initiation factor IF-3, N-terminal domain WSWS_01259 PF01029 NusB family WSWS_01260 PF03780 Asp23 family, cell envelope-related function WSWS_01261 PF01132 Elongation factor P (EF-P) OB domain WSWS_01261 PF08207 Elongation factor P (EF-P) KOW-like domain WSWS_01261 PF09285 Elongation factor P, C-terminal WSWS_01262 PF00342 Phosphoglucose isomerase WSWS_01263 PF01263 Aldose 1-epimerase WSWS_01264 PF06800 Sugar transport protein WSWS_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_01265 PF00672 HAMP domain WSWS_01265 PF00512 His Kinase A (phospho-acceptor) domain WSWS_01266 PF00072 Response regulator receiver domain WSWS_01266 PF00486 Transcriptional regulatory protein, C terminal WSWS_01267 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01268 PF07969 Amidohydrolase family WSWS_01269 PF01751 Toprim domain WSWS_01269 PF01131 DNA topoisomerase WSWS_01270 PF00013 KH domain WSWS_01270 PF12072 Domain of unknown function (DUF3552) WSWS_01270 PF01966 HD domain WSWS_01276 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_01276 PF00107 Zinc-binding dehydrogenase WSWS_01279 PF01668 SmpB protein WSWS_01280 PF00773 RNB domain WSWS_01280 PF00575 S1 RNA binding domain WSWS_01280 PF17876 Cold shock domain WSWS_01280 PF08206 Ribonuclease B OB domain WSWS_01282 PF13344 Haloacid dehalogenase-like hydrolase WSWS_01284 PF02872 5'-nucleotidase, C-terminal domain WSWS_01287 PF01321 Creatinase/Prolidase N-terminal domain WSWS_01287 PF00557 Metallopeptidase family M24 WSWS_01289 PF00561 alpha/beta hydrolase fold WSWS_01290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WSWS_01290 PF16582 Middle domain of thiamine pyrophosphate WSWS_01290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WSWS_01291 PF00425 chorismate binding enzyme WSWS_01295 PF01016 Ribosomal L27 protein WSWS_01296 PF00829 Ribosomal prokaryotic L21 protein WSWS_01304 PF00120 Glutamine synthetase, catalytic domain WSWS_01304 PF03951 Glutamine synthetase, beta-Grasp domain WSWS_01305 PF13411 MerR HTH family regulatory protein WSWS_01310 PF00480 ROK family WSWS_01312 PF01694 Rhomboid family WSWS_01313 PF01812 5-formyltetrahydrofolate cyclo-ligase family WSWS_01315 PF01272 Transcription elongation factor, GreA/GreB, C-term WSWS_01315 PF03449 Transcription elongation factor, N-terminal WSWS_01317 PF01895 PhoU domain WSWS_01318 PF00005 ABC transporter WSWS_01319 PF00005 ABC transporter WSWS_01320 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01321 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01322 PF12849 PBP superfamily domain WSWS_01323 PF01546 Peptidase family M20/M25/M40 WSWS_01325 PF00005 ABC transporter WSWS_01325 PF02687 FtsX-like permease family WSWS_01325 PF12704 MacB-like periplasmic core domain WSWS_01328 PF03807 NADP oxidoreductase coenzyme F420-dependent WSWS_01328 PF14748 Pyrroline-5-carboxylate reductase dimerisation WSWS_01329 PF01098 Cell cycle protein WSWS_01332 PF08245 Mur ligase middle domain WSWS_01332 PF02875 Mur ligase family, glutamate ligase domain WSWS_01332 PF01225 Mur ligase family, catalytic domain WSWS_01333 PF00005 ABC transporter WSWS_01334 PF12704 MacB-like periplasmic core domain WSWS_01334 PF02687 FtsX-like permease family WSWS_01338 PF00300 Histidine phosphatase superfamily (branch 1) WSWS_01339 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_01340 PF02618 YceG-like family WSWS_01341 PF03483 B3/4 domain WSWS_01341 PF03484 tRNA synthetase B5 domain WSWS_01341 PF03147 Ferredoxin-fold anticodon binding domain WSWS_01341 PF01588 Putative tRNA binding domain WSWS_01341 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WSWS_01342 PF01409 tRNA synthetases class II core domain (F) WSWS_01342 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WSWS_01343 PF00749 tRNA synthetases class I (E and Q), catalytic domain WSWS_01345 PF18073 Rubredoxin metal binding domain WSWS_01346 PF00692 dUTPase WSWS_01348 PF00877 NlpC/P60 family WSWS_01349 PF01476 LysM domain WSWS_01349 PF05257 CHAP domain WSWS_01350 PF10431 C-terminal, D2-small domain, of ClpB protein WSWS_01350 PF00004 ATPase family associated with various cellular activities (AAA) WSWS_01350 PF07724 AAA domain (Cdc48 subfamily) WSWS_01350 PF17871 AAA lid domain WSWS_01351 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_01351 PF00107 Zinc-binding dehydrogenase WSWS_01352 PF01783 Ribosomal L32p protein family WSWS_01356 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_01356 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WSWS_01357 PF00574 Clp protease WSWS_01358 PF10298 WhiA N-terminal LAGLIDADG-like domain WSWS_01358 PF02650 WhiA C-terminal HTH domain WSWS_01358 PF14527 WhiA LAGLIDADG-like domain WSWS_01359 PF01933 Uncharacterised protein family UPF0052 WSWS_01360 PF03668 P-loop ATPase protein family WSWS_01361 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain WSWS_01361 PF04616 Glycosyl hydrolases family 43 WSWS_01363 PF02388 FemAB family WSWS_01364 PF03462 PCRF domain WSWS_01364 PF00472 RF-1 domain WSWS_01365 PF07517 SecA DEAD-like domain WSWS_01365 PF07516 SecA Wing and Scaffold domain WSWS_01365 PF01043 SecA preprotein cross-linking domain WSWS_01366 PF01256 Carbohydrate kinase WSWS_01367 PF07685 CobB/CobQ-like glutamine amidotransferase domain WSWS_01368 PF08353 Domain of unknown function (DUF1727) WSWS_01368 PF08245 Mur ligase middle domain WSWS_01369 PF01238 Phosphomannose isomerase type I WSWS_01374 PF00664 ABC transporter transmembrane region WSWS_01374 PF00005 ABC transporter WSWS_01375 PF16360 GTP-binding GTPase Middle Region WSWS_01375 PF13167 GTP-binding GTPase N-terminal WSWS_01375 PF01926 50S ribosome-binding GTPase WSWS_01376 PF00300 Histidine phosphatase superfamily (branch 1) WSWS_01377 PF00270 DEAD/DEAH box helicase WSWS_01377 PF00271 Helicase conserved C-terminal domain WSWS_01378 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WSWS_01379 PF05066 HB1, ASXL, restriction endonuclease HTH domain WSWS_01381 PF01966 HD domain WSWS_01383 PF13180 PDZ domain WSWS_01384 PF00753 Metallo-beta-lactamase superfamily WSWS_01387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_01387 PF00672 HAMP domain WSWS_01387 PF13426 PAS domain WSWS_01387 PF00512 His Kinase A (phospho-acceptor) domain WSWS_01388 PF00486 Transcriptional regulatory protein, C terminal WSWS_01388 PF00072 Response regulator receiver domain WSWS_01390 PF01431 Peptidase family M13 WSWS_01390 PF05649 Peptidase family M13 WSWS_01394 PF02132 RecR protein WSWS_01394 PF13662 Toprim domain WSWS_01395 PF02575 YbaB/EbfC DNA-binding family WSWS_01396 PF12169 DNA polymerase III subunits gamma and tau domain III WSWS_01397 PF00854 POT family WSWS_01398 PF14437 MafB19-like deaminase WSWS_01399 PF05175 Methyltransferase small domain WSWS_01404 PF08241 Methyltransferase domain WSWS_01406 PF00005 ABC transporter WSWS_01407 PF01032 FecCD transport family WSWS_01408 PF01497 Periplasmic binding protein WSWS_01411 PF05239 PRC-barrel domain WSWS_01411 PF01782 RimM N-terminal domain WSWS_01412 PF01746 tRNA (Guanine-1)-methyltransferase WSWS_01414 PF01063 Amino-transferase class IV WSWS_01416 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSWS_01416 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSWS_01417 PF02082 Transcriptional regulator WSWS_01418 PF05368 NmrA-like family WSWS_01431 PF00534 Glycosyl transferases group 1 WSWS_01431 PF09318 Glycosyl transferase 1 domain A WSWS_01432 PF00534 Glycosyl transferases group 1 WSWS_01433 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WSWS_01433 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase WSWS_01434 PF00156 Phosphoribosyl transferase domain WSWS_01435 PF00860 Permease family WSWS_01436 PF02608 ABC transporter substrate-binding protein PnrA-like WSWS_01437 PF00860 Permease family WSWS_01438 PF06418 CTP synthase N-terminus WSWS_01438 PF00117 Glutamine amidotransferase class-I WSWS_01439 PF01207 Dihydrouridine synthase (Dus) WSWS_01440 PF00654 Voltage gated chloride channel WSWS_01441 PF00579 tRNA synthetases class I (W and Y) WSWS_01441 PF01479 S4 domain WSWS_01442 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WSWS_01442 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WSWS_01443 PF01418 Helix-turn-helix domain, rpiR family WSWS_01443 PF01380 SIS domain WSWS_01446 PF01053 Cys/Met metabolism PLP-dependent enzyme WSWS_01447 PF03180 NLPA lipoprotein WSWS_01448 PF02664 S-Ribosylhomocysteinase (LuxS) WSWS_01449 PF01717 Cobalamin-independent synthase, Catalytic domain WSWS_01451 PF07687 Peptidase dimerisation domain WSWS_01451 PF01546 Peptidase family M20/M25/M40 WSWS_01452 PF00085 Thioredoxin WSWS_01461 PF01336 OB-fold nucleic acid binding domain WSWS_01461 PF00152 tRNA synthetases class II (D, K and N) WSWS_01462 PF01430 Hsp33 protein WSWS_01463 PF03306 Alpha-acetolactate decarboxylase WSWS_01464 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WSWS_01464 PF00205 Thiamine pyrophosphate enzyme, central domain WSWS_01464 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WSWS_01465 PF01434 Peptidase family M41 WSWS_01465 PF17862 AAA+ lid domain WSWS_01465 PF06480 FtsH Extracellular WSWS_01465 PF00004 ATPase family associated with various cellular activities (AAA) WSWS_01467 PF01171 PP-loop family WSWS_01469 PF01479 S4 domain WSWS_01470 PF01943 Polysaccharide biosynthesis protein WSWS_01470 PF14667 Polysaccharide biosynthesis C-terminal domain WSWS_01471 PF00271 Helicase conserved C-terminal domain WSWS_01471 PF17757 UvrB interaction domain WSWS_01471 PF02559 CarD-like/TRCF domain WSWS_01471 PF03461 TRCF domain WSWS_01471 PF00270 DEAD/DEAH box helicase WSWS_01472 PF01195 Peptidyl-tRNA hydrolase WSWS_01475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WSWS_01475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WSWS_01477 PF01022 Bacterial regulatory protein, arsR family WSWS_01483 PF00480 ROK family WSWS_01485 PF02673 Bacitracin resistance protein BacA WSWS_01490 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01491 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01492 PF00005 ABC transporter WSWS_01492 PF17912 MalK OB fold domain WSWS_01493 PF00149 Calcineurin-like phosphoesterase WSWS_01493 PF02872 5'-nucleotidase, C-terminal domain WSWS_01494 PF03816 Cell envelope-related transcriptional attenuator domain WSWS_01495 PF00303 Thymidylate synthase WSWS_01496 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WSWS_01498 PF00571 CBS domain WSWS_01498 PF03471 Transporter associated domain WSWS_01498 PF01595 Cyclin M transmembrane N-terminal domain WSWS_01499 PF01595 Cyclin M transmembrane N-terminal domain WSWS_01499 PF00571 CBS domain WSWS_01499 PF03471 Transporter associated domain WSWS_01500 PF00398 Ribosomal RNA adenine dimethylase WSWS_01501 PF01751 Toprim domain WSWS_01501 PF13331 Domain of unknown function (DUF4093) WSWS_01502 PF01026 TatD related DNase WSWS_01503 PF03601 Conserved hypothetical protein 698 WSWS_01504 PF01207 Dihydrouridine synthase (Dus) WSWS_01506 PF07859 alpha/beta hydrolase fold WSWS_01507 PF00324 Amino acid permease WSWS_01508 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WSWS_01508 PF04262 Glutamate-cysteine ligase WSWS_01508 PF18419 ATP-grasp-like domain WSWS_01511 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain WSWS_01511 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain WSWS_01512 PF10509 Galactokinase galactose-binding signature WSWS_01512 PF08544 GHMP kinases C terminal WSWS_01512 PF00288 GHMP kinases N terminal domain WSWS_01513 PF00356 Bacterial regulatory proteins, lacI family WSWS_01514 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WSWS_01515 PF02837 Glycosyl hydrolases family 2, sugar binding domain WSWS_01515 PF16353 Domain of unknown function(DUF4981) WSWS_01515 PF02836 Glycosyl hydrolases family 2, TIM barrel domain WSWS_01515 PF02929 Beta galactosidase small chain WSWS_01515 PF00703 Glycosyl hydrolases family 2 WSWS_01516 PF00155 Aminotransferase class I and II WSWS_01517 PF03180 NLPA lipoprotein WSWS_01518 PF04991 LicD family WSWS_01519 PF00483 Nucleotidyl transferase WSWS_01521 PF00132 Bacterial transferase hexapeptide (six repeats) WSWS_01523 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WSWS_01523 PF00535 Glycosyl transferase family 2 WSWS_01527 PF01061 ABC-2 type transporter WSWS_01528 PF00005 ABC transporter WSWS_01531 PF00535 Glycosyl transferase family 2 WSWS_01531 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WSWS_01532 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WSWS_01532 PF00535 Glycosyl transferase family 2 WSWS_01533 PF01467 Cytidylyltransferase-like WSWS_01539 PF02146 Sir2 family WSWS_01541 PF00368 Hydroxymethylglutaryl-coenzyme A reductase WSWS_01543 PF00884 Sulfatase WSWS_01544 PF13673 Acetyltransferase (GNAT) domain WSWS_01546 PF03989 DNA gyrase C-terminal domain, beta-propeller WSWS_01546 PF00521 DNA gyrase/topoisomerase IV, subunit A WSWS_01547 PF00986 DNA gyrase B subunit, carboxyl terminus WSWS_01547 PF01751 Toprim domain WSWS_01547 PF00204 DNA gyrase B WSWS_01547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_01548 PF02463 RecF/RecN/SMC N terminal domain WSWS_01550 PF09335 SNARE associated Golgi protein WSWS_01552 PF02767 DNA polymerase III beta subunit, central domain WSWS_01552 PF02768 DNA polymerase III beta subunit, C-terminal domain WSWS_01552 PF00712 DNA polymerase III beta subunit, N-terminal domain WSWS_01553 PF00308 Bacterial dnaA protein WSWS_01553 PF08299 Bacterial dnaA protein helix-turn-helix WSWS_01553 PF11638 DnaA N-terminal domain WSWS_01554 PF00468 Ribosomal protein L34 WSWS_01555 PF00825 Ribonuclease P WSWS_01556 PF02096 60Kd inner membrane protein WSWS_01562 PF00665 Integrase core domain WSWS_01562 PF13333 Integrase core domain WSWS_01570 PF00708 Acylphosphatase WSWS_01571 PF00497 Bacterial extracellular solute-binding proteins, family 3 WSWS_01572 PF00528 Binding-protein-dependent transport system inner membrane component WSWS_01573 PF00005 ABC transporter WSWS_01574 PF08264 Anticodon-binding domain of tRNA WSWS_01574 PF09334 tRNA synthetases class I (M) WSWS_01574 PF01588 Putative tRNA binding domain WSWS_01575 PF10502 Signal peptidase, peptidase S26 WSWS_01576 PF02254 TrkA-N domain WSWS_01576 PF02080 TrkA-C domain WSWS_01577 PF02590 Predicted SPOUT methyltransferase WSWS_01578 PF02386 Cation transport protein WSWS_01581 PF00155 Aminotransferase class I and II WSWS_01582 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WSWS_01582 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_01585 PF00083 Sugar (and other) transporter WSWS_01586 PF00075 RNase H WSWS_01587 PF01047 MarR family WSWS_01588 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_01588 PF00107 Zinc-binding dehydrogenase WSWS_01595 PF02913 FAD linked oxidases, C-terminal domain WSWS_01595 PF01565 FAD binding domain WSWS_01596 PF03591 AzlC protein WSWS_01598 PF07687 Peptidase dimerisation domain WSWS_01598 PF01546 Peptidase family M20/M25/M40 WSWS_01599 PF00375 Sodium:dicarboxylate symporter family WSWS_01601 PF00958 GMP synthase C terminal domain WSWS_01601 PF00117 Glutamine amidotransferase class-I WSWS_01601 PF02540 NAD synthase WSWS_01602 PF01306 LacY proton/sugar symporter WSWS_01603 PF04616 Glycosyl hydrolases family 43 WSWS_01603 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain WSWS_01606 PF01938 TRAM domain WSWS_01606 PF05958 tRNA (Uracil-5-)-methyltransferase WSWS_01607 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WSWS_01608 PF00248 Aldo/keto reductase family WSWS_01609 PF00440 Bacterial regulatory proteins, tetR family WSWS_01611 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WSWS_01612 PF13520 Amino acid permease WSWS_01615 PF01594 AI-2E family transporter WSWS_01616 PF02073 Thermophilic metalloprotease (M29) WSWS_01618 PF03853 YjeF-related protein N-terminus WSWS_01619 PF00230 Major intrinsic protein WSWS_01620 PF08240 Alcohol dehydrogenase GroES-like domain WSWS_01620 PF00107 Zinc-binding dehydrogenase WSWS_01621 PF04608 Phosphatidylglycerophosphatase A WSWS_01622 PF13520 Amino acid permease WSWS_01623 PF00710 Asparaginase, N-terminal WSWS_01623 PF17763 Glutaminase/Asparaginase C-terminal domain WSWS_01624 PF02229 Transcriptional Coactivator p15 (PC4) WSWS_01625 PF01209 ubiE/COQ5 methyltransferase family WSWS_01626 PF03061 Thioesterase superfamily WSWS_01627 PF00378 Enoyl-CoA hydratase/isomerase WSWS_01628 PF00501 AMP-binding enzyme WSWS_01628 PF13193 AMP-binding enzyme C-terminal domain WSWS_01629 PF00072 Response regulator receiver domain WSWS_01629 PF00486 Transcriptional regulatory protein, C terminal WSWS_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSWS_01630 PF00512 His Kinase A (phospho-acceptor) domain WSWS_01631 PF01161 Phosphatidylethanolamine-binding protein WSWS_01633 PF16124 RecQ zinc-binding WSWS_01633 PF00570 HRDC domain WSWS_01633 PF00270 DEAD/DEAH box helicase WSWS_01633 PF09382 RQC domain WSWS_01633 PF00271 Helicase conserved C-terminal domain WSWS_01634 PF08501 Shikimate dehydrogenase substrate binding domain WSWS_01634 PF01488 Shikimate / quinate 5-dehydrogenase WSWS_01634 PF18317 Shikimate 5'-dehydrogenase C-terminal domain WSWS_01635 PF00793 DAHP synthetase I family WSWS_01635 PF18152 DAHP synthase ferredoxin-like domain WSWS_01636 PF01761 3-dehydroquinate synthase WSWS_01637 PF01264 Chorismate synthase