locus-tag class description KHQ32_00005 PF00468 Ribosomal protein L34 KHQ32_00010 PF00308 Bacterial dnaA protein KHQ32_00010 PF08299 Bacterial dnaA protein helix-turn-helix KHQ32_00010 PF11638 DnaA N-terminal domain KHQ32_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain KHQ32_00015 PF02767 DNA polymerase III beta subunit, central domain KHQ32_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain KHQ32_00025 PF02463 RecF/RecN/SMC N terminal domain KHQ32_00030 PF00204 DNA gyrase B KHQ32_00030 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ32_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_00030 PF01751 Toprim domain KHQ32_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ32_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ32_00040 PF00884 Sulfatase KHQ32_00045 PF00368 Hydroxymethylglutaryl-coenzyme A reductase KHQ32_00105 PF01418 Helix-turn-helix domain, rpiR family KHQ32_00105 PF01380 SIS domain KHQ32_00110 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KHQ32_00110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ32_00130 PF01479 S4 domain KHQ32_00130 PF00579 tRNA synthetases class I (W and Y) KHQ32_00135 PF00860 Permease family KHQ32_00145 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KHQ32_00145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KHQ32_00190 PF00860 Permease family KHQ32_00200 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ32_00200 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ32_00215 PF02773 S-adenosylmethionine synthetase, C-terminal domain KHQ32_00215 PF02772 S-adenosylmethionine synthetase, central domain KHQ32_00215 PF00438 S-adenosylmethionine synthetase, N-terminal domain KHQ32_00220 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ32_00220 PF01938 TRAM domain KHQ32_00230 PF03352 Methyladenine glycosylase KHQ32_00240 PF08264 Anticodon-binding domain of tRNA KHQ32_00240 PF00133 tRNA synthetases class I (I, L, M and V) KHQ32_00240 PF13603 Leucyl-tRNA synthetase, Domain 2 KHQ32_00240 PF09334 tRNA synthetases class I (M) KHQ32_00250 PF01943 Polysaccharide biosynthesis protein KHQ32_00250 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ32_00265 PF13520 Amino acid permease KHQ32_00275 PF12705 PD-(D/E)XK nuclease superfamily KHQ32_00280 PF00580 UvrD/REP helicase N-terminal domain KHQ32_00280 PF12705 PD-(D/E)XK nuclease superfamily KHQ32_00280 PF13361 UvrD-like helicase C-terminal domain KHQ32_00285 PF08240 Alcohol dehydrogenase GroES-like domain KHQ32_00285 PF00107 Zinc-binding dehydrogenase KHQ32_00295 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KHQ32_00295 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KHQ32_00300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ32_00300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ32_00305 PF00156 Phosphoribosyl transferase domain KHQ32_00305 PF09182 Bacterial purine repressor, N-terminal KHQ32_00310 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ32_00310 PF12804 MobA-like NTP transferase domain KHQ32_00315 PF14572 Phosphoribosyl synthetase-associated domain KHQ32_00315 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ32_00320 PF06335 Protein of unknown function (DUF1054) KHQ32_00325 PF01250 Ribosomal protein S6 KHQ32_00330 PF00436 Single-strand binding protein family KHQ32_00335 PF01084 Ribosomal protein S18 KHQ32_00350 PF00486 Transcriptional regulatory protein, C terminal KHQ32_00350 PF00072 Response regulator receiver domain KHQ32_00355 PF00672 HAMP domain KHQ32_00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_00355 PF00512 His Kinase A (phospho-acceptor) domain KHQ32_00355 PF00989 PAS fold KHQ32_00370 PF00753 Metallo-beta-lactamase superfamily KHQ32_00375 PF13180 PDZ domain KHQ32_00385 PF01966 HD domain KHQ32_00395 PF05066 HB1, ASXL, restriction endonuclease HTH domain KHQ32_00400 PF00117 Glutamine amidotransferase class-I KHQ32_00400 PF06418 CTP synthase N-terminus KHQ32_00405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ32_00410 PF00271 Helicase conserved C-terminal domain KHQ32_00410 PF00270 DEAD/DEAH box helicase KHQ32_00420 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KHQ32_00425 PF13538 UvrD-like helicase C-terminal domain KHQ32_00430 PF00579 tRNA synthetases class I (W and Y) KHQ32_00435 PF02541 Ppx/GppA phosphatase family KHQ32_00450 PF01546 Peptidase family M20/M25/M40 KHQ32_00460 PF00625 Guanylate kinase KHQ32_00475 PF00005 ABC transporter KHQ32_00480 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ32_00485 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_00490 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_00495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ32_00500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KHQ32_00505 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_00510 PF12911 N-terminal TM domain of oligopeptide transport permease C KHQ32_00510 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_00515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ32_00515 PF00005 ABC transporter KHQ32_00520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KHQ32_00520 PF00005 ABC transporter KHQ32_00525 PF01368 DHH family KHQ32_00525 PF02272 DHHA1 domain KHQ32_00530 PF03948 Ribosomal protein L9, C-terminal domain KHQ32_00530 PF01281 Ribosomal protein L9, N-terminal domain KHQ32_00535 PF00772 DnaB-like helicase N terminal domain KHQ32_00535 PF03796 DnaB-like helicase C terminal domain KHQ32_00540 PF07690 Major Facilitator Superfamily KHQ32_00555 PF08544 GHMP kinases C terminal KHQ32_00555 PF00288 GHMP kinases N terminal domain KHQ32_00565 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ32_00570 PF00300 Histidine phosphatase superfamily (branch 1) KHQ32_00575 PF00005 ABC transporter KHQ32_00575 PF01476 LysM domain KHQ32_00595 PF09335 SNARE associated Golgi protein KHQ32_00605 PF01566 Natural resistance-associated macrophage protein KHQ32_00610 PF08245 Mur ligase middle domain KHQ32_00610 PF02875 Mur ligase family, glutamate ligase domain KHQ32_00610 PF01225 Mur ligase family, catalytic domain KHQ32_00625 PF01098 Cell cycle protein KHQ32_00645 PF00005 ABC transporter KHQ32_00645 PF12704 MacB-like periplasmic core domain KHQ32_00645 PF02687 FtsX-like permease family KHQ32_00650 PF01979 Amidohydrolase family KHQ32_00655 PF07702 UTRA domain KHQ32_00655 PF00392 Bacterial regulatory proteins, gntR family KHQ32_00660 PF00163 Ribosomal protein S4/S9 N-terminal domain KHQ32_00660 PF01479 S4 domain KHQ32_00665 PF06160 Septation ring formation regulator, EzrA KHQ32_00670 PF00860 Permease family KHQ32_00675 PF00709 Adenylosuccinate synthetase KHQ32_00680 PF00156 Phosphoribosyl transferase domain KHQ32_00705 PF01255 Putative undecaprenyl diphosphate synthase KHQ32_00715 PF17820 PDZ domain KHQ32_00715 PF02163 Peptidase family M50 KHQ32_00720 PF04073 Aminoacyl-tRNA editing domain KHQ32_00720 PF03129 Anticodon binding domain KHQ32_00720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ32_00725 PF11490 DNA polymerase III polC-type N-terminus II KHQ32_00725 PF14480 DNA polymerase III polC-type N-terminus I KHQ32_00725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ32_00725 PF02811 PHP domain KHQ32_00725 PF00929 Exonuclease KHQ32_00725 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ32_00725 PF14579 Helix-hairpin-helix motif KHQ32_00730 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ32_00730 PF00588 SpoU rRNA Methylase family KHQ32_00755 PF04851 Type III restriction enzyme, res subunit KHQ32_00755 PF00271 Helicase conserved C-terminal domain KHQ32_00765 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KHQ32_00765 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KHQ32_00770 PF00689 Cation transporting ATPase, C-terminus KHQ32_00770 PF00690 Cation transporter/ATPase, N-terminus KHQ32_00780 PF16921 Tex protein YqgF-like domain KHQ32_00780 PF09371 Tex-like protein N-terminal domain KHQ32_00780 PF00575 S1 RNA binding domain KHQ32_00780 PF17674 HHH domain KHQ32_00815 PF12072 Domain of unknown function (DUF3552) KHQ32_00815 PF01966 HD domain KHQ32_00815 PF00013 KH domain KHQ32_00830 PF00478 IMP dehydrogenase / GMP reductase domain KHQ32_00845 PF00145 C-5 cytosine-specific DNA methylase KHQ32_00850 PF09561 HpaII restriction endonuclease KHQ32_00920 PF00990 Diguanylate cyclase, GGDEF domain KHQ32_00925 PF00258 Flavodoxin KHQ32_00930 PF00990 Diguanylate cyclase, GGDEF domain KHQ32_00945 PF03358 NADPH-dependent FMN reductase KHQ32_00950 PF00294 pfkB family carbohydrate kinase KHQ32_00950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ32_00955 PF05025 RbsD / FucU transport protein family KHQ32_00960 PF06800 Sugar transport protein KHQ32_00965 PF00893 Small Multidrug Resistance protein KHQ32_00970 PF00924 Mechanosensitive ion channel KHQ32_00975 PF06800 Sugar transport protein KHQ32_00980 PF00342 Phosphoglucose isomerase KHQ32_00985 PF09285 Elongation factor P, C-terminal KHQ32_00985 PF08207 Elongation factor P (EF-P) KOW-like domain KHQ32_00985 PF01132 Elongation factor P (EF-P) OB domain KHQ32_00990 PF03780 Asp23 family, cell envelope-related function KHQ32_00995 PF01029 NusB family KHQ32_01000 PF05198 Translation initiation factor IF-3, N-terminal domain KHQ32_01000 PF00707 Translation initiation factor IF-3, C-terminal domain KHQ32_01005 PF01632 Ribosomal protein L35 KHQ32_01010 PF00453 Ribosomal protein L20 KHQ32_01015 PF00164 Ribosomal protein S12/S23 KHQ32_01020 PF00177 Ribosomal protein S7p/S5e KHQ32_01025 PF00679 Elongation factor G C-terminus KHQ32_01025 PF14492 Elongation Factor G, domain II KHQ32_01025 PF03764 Elongation factor G, domain IV KHQ32_01025 PF00009 Elongation factor Tu GTP binding domain KHQ32_01025 PF03144 Elongation factor Tu domain 2 KHQ32_01030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ32_01030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KHQ32_01035 PF08402 TOBE domain KHQ32_01035 PF00005 ABC transporter KHQ32_01040 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_01045 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_01050 PF13416 Bacterial extracellular solute-binding protein KHQ32_01055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ32_01060 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KHQ32_01065 PF02603 HPr Serine kinase N terminus KHQ32_01065 PF07475 HPr Serine kinase C-terminal domain KHQ32_01070 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KHQ32_01070 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KHQ32_01075 PF00483 Nucleotidyl transferase KHQ32_01080 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ32_01090 PF00381 PTS HPr component phosphorylation site KHQ32_01095 PF05524 PEP-utilising enzyme, N-terminal KHQ32_01095 PF00391 PEP-utilising enzyme, mobile domain KHQ32_01095 PF02896 PEP-utilising enzyme, TIM barrel domain KHQ32_01100 PF00121 Triosephosphate isomerase KHQ32_01105 PF00113 Enolase, C-terminal TIM barrel domain KHQ32_01105 PF03952 Enolase, N-terminal domain KHQ32_01115 PF17876 Cold shock domain KHQ32_01115 PF08206 Ribonuclease B OB domain KHQ32_01115 PF00575 S1 RNA binding domain KHQ32_01115 PF00773 RNB domain KHQ32_01120 PF01668 SmpB protein KHQ32_01125 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_01130 PF00005 ABC transporter KHQ32_01135 PF03167 Uracil DNA glycosylase superfamily KHQ32_01140 PF01515 Phosphate acetyl/butaryl transferase KHQ32_01145 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KHQ32_01155 PF14480 DNA polymerase III polC-type N-terminus I KHQ32_01155 PF11490 DNA polymerase III polC-type N-terminus II KHQ32_01155 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ32_01155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ32_01155 PF00929 Exonuclease KHQ32_01155 PF02811 PHP domain KHQ32_01155 PF14579 Helix-hairpin-helix motif KHQ32_01160 PF01565 FAD binding domain KHQ32_01160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KHQ32_01165 PF02457 DisA bacterial checkpoint controller nucleotide-binding KHQ32_01175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ32_01175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ32_01175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ32_01175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ32_01185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ32_01185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ32_01190 PF01979 Amidohydrolase family KHQ32_01195 PF00117 Glutamine amidotransferase class-I KHQ32_01195 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KHQ32_01205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KHQ32_01210 PF00156 Phosphoribosyl transferase domain KHQ32_01215 PF00534 Glycosyl transferases group 1 KHQ32_01215 PF13439 Glycosyltransferase Family 4 KHQ32_01220 PF00534 Glycosyl transferases group 1 KHQ32_01220 PF13439 Glycosyltransferase Family 4 KHQ32_01230 PF00884 Sulfatase KHQ32_01250 PF09334 tRNA synthetases class I (M) KHQ32_01250 PF08264 Anticodon-binding domain of tRNA KHQ32_01250 PF01588 Putative tRNA binding domain KHQ32_01255 PF00999 Sodium/hydrogen exchanger family KHQ32_01260 PF01026 TatD related DNase KHQ32_01265 PF13331 Domain of unknown function (DUF4093) KHQ32_01265 PF01751 Toprim domain KHQ32_01270 PF00398 Ribosomal RNA adenine dimethylase KHQ32_01275 PF01595 Cyclin M transmembrane N-terminal domain KHQ32_01275 PF03471 Transporter associated domain KHQ32_01275 PF00571 CBS domain KHQ32_01280 PF06257 Biofilm formation stimulator VEG KHQ32_01285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KHQ32_01290 PF00303 Thymidylate synthase KHQ32_01295 PF03816 Cell envelope-related transcriptional attenuator domain KHQ32_01300 PF04024 PspC domain KHQ32_01305 PF02673 Bacitracin resistance protein BacA KHQ32_01310 PF03631 Virulence factor BrkB KHQ32_01325 PF01195 Peptidyl-tRNA hydrolase KHQ32_01330 PF00271 Helicase conserved C-terminal domain KHQ32_01330 PF00270 DEAD/DEAH box helicase KHQ32_01330 PF17757 UvrB interaction domain KHQ32_01330 PF02559 CarD-like/TRCF domain KHQ32_01330 PF03461 TRCF domain KHQ32_01335 PF01943 Polysaccharide biosynthesis protein KHQ32_01335 PF14667 Polysaccharide biosynthesis C-terminal domain KHQ32_01340 PF01479 S4 domain KHQ32_01350 PF01171 PP-loop family KHQ32_01355 PF00156 Phosphoribosyl transferase domain KHQ32_01360 PF01434 Peptidase family M41 KHQ32_01360 PF06480 FtsH Extracellular KHQ32_01360 PF17862 AAA+ lid domain KHQ32_01360 PF00004 ATPase family associated with various cellular activities (AAA) KHQ32_01365 PF01430 Hsp33 protein KHQ32_01370 PF01336 OB-fold nucleic acid binding domain KHQ32_01370 PF00152 tRNA synthetases class II (D, K and N) KHQ32_01480 PF01654 Cytochrome bd terminal oxidase subunit I KHQ32_01485 PF02322 Cytochrome bd terminal oxidase subunit II KHQ32_01490 PF00005 ABC transporter KHQ32_01490 PF00664 ABC transporter transmembrane region KHQ32_01495 PF00005 ABC transporter KHQ32_01495 PF00664 ABC transporter transmembrane region KHQ32_01500 PF13457 GW (Gly-Tryp) dipeptide domain KHQ32_01500 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KHQ32_01505 PF02222 ATP-grasp domain KHQ32_01525 PF00313 'Cold-shock' DNA-binding domain KHQ32_01530 PF00293 NUDIX domain KHQ32_01540 PF01048 Phosphorylase superfamily KHQ32_01555 PF07972 NrdI Flavodoxin like KHQ32_01560 PF00462 Glutaredoxin KHQ32_01565 PF00317 Ribonucleotide reductase, all-alpha domain KHQ32_01565 PF02867 Ribonucleotide reductase, barrel domain KHQ32_01565 PF08343 Ribonucleotide reductase N-terminal KHQ32_01570 PF00268 Ribonucleotide reductase, small chain KHQ32_01580 PF02653 Branched-chain amino acid transport system / permease component KHQ32_01585 PF00005 ABC transporter KHQ32_01590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KHQ32_01605 PF04002 RadC-like JAB domain KHQ32_01615 PF04085 rod shape-determining protein MreC KHQ32_01630 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_01635 PF00005 ABC transporter KHQ32_01640 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ32_01645 PF01268 Formate--tetrahydrofolate ligase KHQ32_01670 PF00324 Amino acid permease KHQ32_01675 PF00391 PEP-utilising enzyme, mobile domain KHQ32_01675 PF00224 Pyruvate kinase, barrel domain KHQ32_01675 PF02887 Pyruvate kinase, alpha/beta domain KHQ32_01685 PF04452 RNA methyltransferase KHQ32_01690 PF02381 MraZ protein, putative antitoxin-like KHQ32_01695 PF01795 MraW methylase family KHQ32_01705 PF03717 Penicillin-binding Protein dimerisation domain KHQ32_01705 PF00905 Penicillin binding protein transpeptidase domain KHQ32_01705 PF03793 PASTA domain KHQ32_01710 PF00953 Glycosyl transferase family 4 KHQ32_01710 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KHQ32_01715 PF02875 Mur ligase family, glutamate ligase domain KHQ32_01715 PF08245 Mur ligase middle domain KHQ32_01720 PF04101 Glycosyltransferase family 28 C-terminal domain KHQ32_01720 PF03033 Glycosyltransferase family 28 N-terminal domain KHQ32_01725 PF03799 Cell division protein FtsQ KHQ32_01725 PF08478 POTRA domain, FtsQ-type KHQ32_01730 PF11983 Membrane-attachment and polymerisation-promoting switch KHQ32_01730 PF02491 SHS2 domain inserted in FTSA KHQ32_01735 PF12327 FtsZ family, C-terminal domain KHQ32_01735 PF00091 Tubulin/FtsZ family, GTPase domain KHQ32_01740 PF04472 Cell division protein SepF KHQ32_01745 PF02325 YGGT family KHQ32_01750 PF01479 S4 domain KHQ32_01750 PF17774 Putative RNA-binding domain in YlmH KHQ32_01755 PF05103 DivIVA protein KHQ32_01760 PF08264 Anticodon-binding domain of tRNA KHQ32_01760 PF00133 tRNA synthetases class I (I, L, M and V) KHQ32_01760 PF06827 Zinc finger found in FPG and IleRS KHQ32_01765 PF00300 Histidine phosphatase superfamily (branch 1) KHQ32_01775 PF14490 Helix-hairpin-helix containing domain KHQ32_01775 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KHQ32_01775 PF13538 UvrD-like helicase C-terminal domain KHQ32_01780 PF01709 Transcriptional regulator KHQ32_01785 PF00437 Type II/IV secretion system protein KHQ32_01790 PF00482 Type II secretion system (T2SS), protein F KHQ32_01795 PF07963 Prokaryotic N-terminal methylation motif KHQ32_01825 PF00271 Helicase conserved C-terminal domain KHQ32_01825 PF17764 3′ DNA-binding domain (3′BD) KHQ32_01825 PF18074 Primosomal protein N C-terminal domain KHQ32_01825 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KHQ32_01825 PF04851 Type III restriction enzyme, res subunit KHQ32_01830 PF02911 Formyl transferase, C-terminal domain KHQ32_01830 PF00551 Formyl transferase KHQ32_01835 PF01189 16S rRNA methyltransferase RsmB/F KHQ32_01835 PF01029 NusB family KHQ32_01845 PF00069 Protein kinase domain KHQ32_01845 PF03793 PASTA domain KHQ32_01850 PF03193 RsgA GTPase KHQ32_01850 PF16745 RsgA N-terminal domain KHQ32_01855 PF00834 Ribulose-phosphate 3 epimerase family KHQ32_01865 PF00830 Ribosomal L28 family KHQ32_01870 PF03780 Asp23 family, cell envelope-related function KHQ32_01875 PF13684 Dihydroxyacetone kinase family KHQ32_01875 PF02734 DAK2 domain KHQ32_01880 PF00270 DEAD/DEAH box helicase KHQ32_01880 PF17191 RecG wedge domain KHQ32_01880 PF00271 Helicase conserved C-terminal domain KHQ32_01885 PF02504 Fatty acid synthesis protein KHQ32_01890 PF00550 Phosphopantetheine attachment site KHQ32_01895 PF00035 Double-stranded RNA binding motif KHQ32_01895 PF14622 Ribonuclease-III-like KHQ32_01900 PF02463 RecF/RecN/SMC N terminal domain KHQ32_01900 PF06470 SMC proteins Flexible Hinge Domain KHQ32_01905 PF02881 SRP54-type protein, helical bundle domain KHQ32_01905 PF00448 SRP54-type protein, GTPase domain KHQ32_01910 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KHQ32_01915 PF00448 SRP54-type protein, GTPase domain KHQ32_01915 PF02881 SRP54-type protein, helical bundle domain KHQ32_01915 PF02978 Signal peptide binding domain KHQ32_01920 PF00886 Ribosomal protein S16 KHQ32_01925 PF05239 PRC-barrel domain KHQ32_01925 PF01782 RimM N-terminal domain KHQ32_01930 PF01746 tRNA (Guanine-1)-methyltransferase KHQ32_01935 PF01245 Ribosomal protein L19 KHQ32_01940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ32_01940 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ32_01945 PF01361 Tautomerase enzyme KHQ32_01950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ32_01950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ32_01955 PF00293 NUDIX domain KHQ32_01960 PF01712 Deoxynucleoside kinase KHQ32_01965 PF01741 Large-conductance mechanosensitive channel, MscL KHQ32_01990 PF06146 Phosphate-starvation-inducible E KHQ32_01995 PF05389 Negative regulator of genetic competence (MecA) KHQ32_02000 PF01432 Peptidase family M3 KHQ32_02000 PF08439 Oligopeptidase F KHQ32_02015 PF01321 Creatinase/Prolidase N-terminal domain KHQ32_02015 PF00557 Metallopeptidase family M24 KHQ32_02020 PF00356 Bacterial regulatory proteins, lacI family KHQ32_02060 PF04127 DNA / pantothenate metabolism flavoprotein KHQ32_02060 PF02441 Flavoprotein KHQ32_02065 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal KHQ32_02065 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal KHQ32_02075 PF05036 Sporulation related domain KHQ32_02075 PF01520 N-acetylmuramoyl-L-alanine amidase KHQ32_02080 PF03129 Anticodon binding domain KHQ32_02080 PF13393 Histidyl-tRNA synthetase KHQ32_02085 PF01336 OB-fold nucleic acid binding domain KHQ32_02085 PF00152 tRNA synthetases class II (D, K and N) KHQ32_02085 PF02938 GAD domain KHQ32_02090 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KHQ32_02090 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KHQ32_02095 PF01165 Ribosomal protein S21 KHQ32_02100 PF09424 Yqey-like protein KHQ32_02105 PF02130 Uncharacterized protein family UPF0054 KHQ32_02110 PF01219 Prokaryotic diacylglycerol kinase KHQ32_02115 PF07650 KH domain KHQ32_02115 PF01926 50S ribosome-binding GTPase KHQ32_02120 PF02565 Recombination protein O C terminal KHQ32_02120 PF11967 Recombination protein O N terminal KHQ32_02125 PF02091 Glycyl-tRNA synthetase alpha subunit KHQ32_02130 PF02092 Glycyl-tRNA synthetase beta subunit KHQ32_02140 PF01116 Fructose-bisphosphate aldolase class-II KHQ32_02145 PF00230 Major intrinsic protein KHQ32_02150 PF02652 L-lactate permease KHQ32_02160 PF03741 Integral membrane protein TerC family KHQ32_02165 PF10282 Lactonase, 7-bladed beta-propeller KHQ32_02170 PF00588 SpoU rRNA Methylase family KHQ32_02175 PF01580 FtsK/SpoIIIE family KHQ32_02175 PF09397 Ftsk gamma domain KHQ32_02175 PF17854 FtsK alpha domain KHQ32_02180 PF00005 ABC transporter KHQ32_02180 PF13732 Domain of unknown function (DUF4162) KHQ32_02190 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ32_02195 PF02151 UvrB/uvrC motif KHQ32_02195 PF08459 UvrC Helix-hairpin-helix N-terminal KHQ32_02195 PF01541 GIY-YIG catalytic domain KHQ32_02200 PF01018 GTP1/OBG KHQ32_02200 PF01926 50S ribosome-binding GTPase KHQ32_02200 PF09269 Domain of unknown function (DUF1967) KHQ32_02210 PF01205 Uncharacterized protein family UPF0029 KHQ32_02210 PF09186 Domain of unknown function (DUF1949) KHQ32_02215 PF07690 Major Facilitator Superfamily KHQ32_02220 PF00571 CBS domain KHQ32_02220 PF00478 IMP dehydrogenase / GMP reductase domain KHQ32_02225 PF07499 RuvA, C-terminal domain KHQ32_02225 PF01330 RuvA N terminal domain KHQ32_02230 PF17864 RuvB AAA lid domain KHQ32_02230 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ32_02230 PF05491 RuvB C-terminal winged helix domain KHQ32_02260 PF02699 Preprotein translocase subunit KHQ32_02265 PF00817 impB/mucB/samB family KHQ32_02265 PF11799 impB/mucB/samB family C-terminal domain KHQ32_02270 PF01368 DHH family KHQ32_02270 PF02272 DHHA1 domain KHQ32_02275 PF00271 Helicase conserved C-terminal domain KHQ32_02275 PF00270 DEAD/DEAH box helicase KHQ32_02280 PF00132 Bacterial transferase hexapeptide (six repeats) KHQ32_02280 PF12464 Maltose acetyltransferase KHQ32_02285 PF02272 DHHA1 domain KHQ32_02285 PF01411 tRNA synthetases class II (A) KHQ32_02285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ32_02290 PF06135 IreB regulatory phosphoprotein KHQ32_02295 PF03652 Holliday junction resolvase KHQ32_02300 PF06949 Protein of unknown function (DUF1292) KHQ32_02305 PF06949 Protein of unknown function (DUF1292) KHQ32_02315 PF03772 Competence protein KHQ32_02315 PF13567 Domain of unknown function (DUF4131) KHQ32_02315 PF00753 Metallo-beta-lactamase superfamily KHQ32_02320 PF06144 DNA polymerase III, delta subunit KHQ32_02325 PF00312 Ribosomal protein S15 KHQ32_02330 PF01649 Ribosomal protein S20 KHQ32_02340 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ32_02340 PF17770 Ribonuclease J C-terminal domain KHQ32_02340 PF00753 Metallo-beta-lactamase superfamily KHQ32_02350 PF03144 Elongation factor Tu domain 2 KHQ32_02350 PF00009 Elongation factor Tu GTP binding domain KHQ32_02350 PF03143 Elongation factor Tu C-terminal domain KHQ32_02355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KHQ32_02355 PF05698 Bacterial trigger factor protein (TF) C-terminus KHQ32_02355 PF05697 Bacterial trigger factor protein (TF) KHQ32_02360 PF07724 AAA domain (Cdc48 subfamily) KHQ32_02360 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ32_02360 PF06689 ClpX C4-type zinc finger KHQ32_02365 PF01926 50S ribosome-binding GTPase KHQ32_02380 PF00488 MutS domain V KHQ32_02380 PF01713 Smr domain KHQ32_02390 PF00085 Thioredoxin KHQ32_02395 PF01177 Asp/Glu/Hydantoin racemase KHQ32_02400 PF01725 Ham1 family KHQ32_02410 PF04607 Region found in RelA / SpoT proteins KHQ32_02415 PF01513 ATP-NAD kinase KHQ32_02420 PF00849 RNA pseudouridylate synthase KHQ32_02425 PF00571 CBS domain KHQ32_02425 PF03448 MgtE intracellular N domain KHQ32_02425 PF01769 Divalent cation transporter KHQ32_02430 PF02576 RimP N-terminal domain KHQ32_02430 PF17384 RimP C-terminal SH3 domain KHQ32_02435 PF13184 NusA-like KH domain KHQ32_02435 PF08529 NusA N-terminal domain KHQ32_02435 PF00575 S1 RNA binding domain KHQ32_02440 PF04296 Protein of unknown function (DUF448) KHQ32_02445 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KHQ32_02450 PF04760 Translation initiation factor IF-2, N-terminal region KHQ32_02450 PF00009 Elongation factor Tu GTP binding domain KHQ32_02450 PF11987 Translation-initiation factor 2 KHQ32_02455 PF02033 Ribosome-binding factor A KHQ32_02460 PF13302 Acetyltransferase (GNAT) domain KHQ32_02465 PF16198 tRNA pseudouridylate synthase B C-terminal domain KHQ32_02465 PF01509 TruB family pseudouridylate synthase (N terminal domain) KHQ32_02475 PF06574 FAD synthetase KHQ32_02475 PF01687 Riboflavin kinase KHQ32_02480 PF05670 NFACT protein RNA binding domain KHQ32_02485 PF03932 CutC family KHQ32_02490 PF02645 Uncharacterised protein, DegV family COG1307 KHQ32_02495 PF02645 Uncharacterised protein, DegV family COG1307 KHQ32_02500 PF09330 D-lactate dehydrogenase, membrane binding KHQ32_02500 PF01565 FAD binding domain KHQ32_02505 PF06855 YozE SAM-like fold KHQ32_02510 PF01926 50S ribosome-binding GTPase KHQ32_02515 PF01351 Ribonuclease HII KHQ32_02520 PF00746 LPXTG cell wall anchor motif KHQ32_02535 PF02481 DNA recombination-mediator protein A KHQ32_02535 PF17782 DprA winged helix domain KHQ32_02540 PF01396 Topoisomerase DNA binding C4 zinc finger KHQ32_02540 PF01751 Toprim domain KHQ32_02540 PF01131 DNA topoisomerase KHQ32_02545 PF00589 Phage integrase family KHQ32_02545 PF02899 Phage integrase, N-terminal SAM-like domain KHQ32_02560 PF07690 Major Facilitator Superfamily KHQ32_02565 PF02660 Glycerol-3-phosphate acyltransferase KHQ32_02570 PF01751 Toprim domain KHQ32_02570 PF00986 DNA gyrase B subunit, carboxyl terminus KHQ32_02570 PF00204 DNA gyrase B KHQ32_02570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_02575 PF00521 DNA gyrase/topoisomerase IV, subunit A KHQ32_02575 PF03989 DNA gyrase C-terminal domain, beta-propeller KHQ32_02595 PF02833 DHHA2 domain KHQ32_02595 PF01368 DHH family KHQ32_02605 PF00571 CBS domain KHQ32_02605 PF00005 ABC transporter KHQ32_02610 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_02630 PF13419 Haloacid dehalogenase-like hydrolase KHQ32_02640 PF08000 Bacterial PH domain KHQ32_02645 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KHQ32_02645 PF00753 Metallo-beta-lactamase superfamily KHQ32_02645 PF17770 Ribonuclease J C-terminal domain KHQ32_02650 PF07288 Protein of unknown function (DUF1447) KHQ32_02660 PF01327 Polypeptide deformylase KHQ32_02665 PF05256 Uncharacterised protein family (UPF0223) KHQ32_02670 PF00459 Inositol monophosphatase family KHQ32_02675 PF14492 Elongation Factor G, domain II KHQ32_02675 PF00679 Elongation factor G C-terminus KHQ32_02675 PF03144 Elongation factor Tu domain 2 KHQ32_02675 PF00009 Elongation factor Tu GTP binding domain KHQ32_02685 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KHQ32_02695 PF01467 Cytidylyltransferase-like KHQ32_02700 PF13180 PDZ domain KHQ32_02700 PF05362 Lon protease (S16) C-terminal proteolytic domain KHQ32_02705 PF07690 Major Facilitator Superfamily KHQ32_02710 PF01807 CHC2 zinc finger KHQ32_02710 PF08275 DNA primase catalytic core, N-terminal domain KHQ32_02710 PF10410 DnaB-helicase binding domain of primase KHQ32_02715 PF04542 Sigma-70 region 2 KHQ32_02715 PF04545 Sigma-70, region 4 KHQ32_02715 PF04539 Sigma-70 region 3 KHQ32_02715 PF03979 Sigma-70 factor, region 1.1 KHQ32_02715 PF00140 Sigma-70 factor, region 1.2 KHQ32_02720 PF07690 Major Facilitator Superfamily KHQ32_02725 PF00072 Response regulator receiver domain KHQ32_02725 PF00486 Transcriptional regulatory protein, C terminal KHQ32_02730 PF00512 His Kinase A (phospho-acceptor) domain KHQ32_02730 PF00989 PAS fold KHQ32_02730 PF16736 Single Cache-like KHQ32_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_02735 PF00485 Phosphoribulokinase / Uridine kinase family KHQ32_02740 PF14794 Domain of unknown function (DUF4479) KHQ32_02740 PF01588 Putative tRNA binding domain KHQ32_02750 PF01225 Mur ligase family, catalytic domain KHQ32_02750 PF02875 Mur ligase family, glutamate ligase domain KHQ32_02750 PF08245 Mur ligase middle domain KHQ32_02755 PF01027 Inhibitor of apoptosis-promoting Bax1 KHQ32_02760 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KHQ32_02760 PF00476 DNA polymerase family A KHQ32_02760 PF01367 5'-3' exonuclease, C-terminal SAM fold KHQ32_02775 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KHQ32_02775 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KHQ32_02775 PF06827 Zinc finger found in FPG and IleRS KHQ32_02780 PF01121 Dephospho-CoA kinase KHQ32_02790 PF07319 Primosomal protein DnaI N-terminus KHQ32_02790 PF01695 IstB-like ATP binding protein KHQ32_02805 PF00486 Transcriptional regulatory protein, C terminal KHQ32_02805 PF00072 Response regulator receiver domain KHQ32_02820 PF13520 Amino acid permease KHQ32_02825 PF00072 Response regulator receiver domain KHQ32_02825 PF04397 LytTr DNA-binding domain KHQ32_02835 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ32_02835 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ32_02840 PF01053 Cys/Met metabolism PLP-dependent enzyme KHQ32_02865 PF07687 Peptidase dimerisation domain KHQ32_02865 PF01546 Peptidase family M20/M25/M40 KHQ32_02870 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KHQ32_02875 PF00005 ABC transporter KHQ32_02875 PF12848 ABC transporter KHQ32_02925 PF01070 FMN-dependent dehydrogenase KHQ32_02940 PF00817 impB/mucB/samB family KHQ32_02940 PF11798 IMS family HHH motif KHQ32_02940 PF11799 impB/mucB/samB family C-terminal domain KHQ32_02955 PF03577 Peptidase family C69 KHQ32_02960 PF02517 CPBP intramembrane metalloprotease KHQ32_03010 PF13936 Helix-turn-helix domain KHQ32_03040 PF00535 Glycosyl transferase family 2 KHQ32_03045 PF03006 Haemolysin-III related KHQ32_03050 PF02632 BioY family KHQ32_03060 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KHQ32_03065 PF01039 Carboxyl transferase domain KHQ32_03070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ32_03070 PF00289 Biotin carboxylase, N-terminal domain KHQ32_03070 PF02785 Biotin carboxylase C-terminal domain KHQ32_03075 PF07977 FabA-like domain KHQ32_03080 PF00364 Biotin-requiring enzyme KHQ32_03085 PF02801 Beta-ketoacyl synthase, C-terminal domain KHQ32_03085 PF00109 Beta-ketoacyl synthase, N-terminal domain KHQ32_03095 PF08659 KR domain KHQ32_03095 PF02801 Beta-ketoacyl synthase, C-terminal domain KHQ32_03095 PF00109 Beta-ketoacyl synthase, N-terminal domain KHQ32_03095 PF14765 Polyketide synthase dehydratase KHQ32_03095 PF00550 Phosphopantetheine attachment site KHQ32_03095 PF08240 Alcohol dehydrogenase GroES-like domain KHQ32_03095 PF00698 Acyl transferase domain KHQ32_03095 PF16197 Ketoacyl-synthetase C-terminal extension KHQ32_03100 PF03060 Nitronate monooxygenase KHQ32_03105 PF00550 Phosphopantetheine attachment site KHQ32_03110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KHQ32_03110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KHQ32_03120 PF07977 FabA-like domain KHQ32_03125 PF01757 Acyltransferase family KHQ32_03130 PF00005 ABC transporter KHQ32_03140 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ32_03140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ32_03160 PF02581 Thiamine monophosphate synthase KHQ32_03165 PF08543 Phosphomethylpyrimidine kinase KHQ32_03170 PF02110 Hydroxyethylthiazole kinase family KHQ32_03175 PF13382 Adenine deaminase C-terminal domain KHQ32_03175 PF01979 Amidohydrolase family KHQ32_03185 PF03009 Glycerophosphoryl diester phosphodiesterase family KHQ32_03205 PF00990 Diguanylate cyclase, GGDEF domain KHQ32_03220 PF02390 Putative methyltransferase KHQ32_03230 PF00005 ABC transporter KHQ32_03235 PF01230 HIT domain KHQ32_03245 PF00271 Helicase conserved C-terminal domain KHQ32_03245 PF04851 Type III restriction enzyme, res subunit KHQ32_03245 PF17757 UvrB interaction domain KHQ32_03245 PF12344 Ultra-violet resistance protein B KHQ32_03245 PF02151 UvrB/uvrC motif KHQ32_03260 PF12826 Helix-hairpin-helix motif KHQ32_03260 PF01653 NAD-dependent DNA ligase adenylation domain KHQ32_03260 PF03120 NAD-dependent DNA ligase OB-fold domain KHQ32_03260 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KHQ32_03260 PF00533 BRCA1 C Terminus (BRCT) domain KHQ32_03265 PF13361 UvrD-like helicase C-terminal domain KHQ32_03265 PF00580 UvrD/REP helicase N-terminal domain KHQ32_03280 PF01625 Peptide methionine sulfoxide reductase KHQ32_03290 PF02926 THUMP domain KHQ32_03290 PF01170 Putative RNA methylase family UPF0020 KHQ32_03300 PF05103 DivIVA protein KHQ32_03305 PF06908 YspA SLOG family KHQ32_03310 PF03838 Recombination protein U KHQ32_03315 PF00912 Transglycosylase KHQ32_03315 PF00905 Penicillin binding protein transpeptidase domain KHQ32_03330 PF07261 Replication initiation and membrane attachment KHQ32_03345 PF01336 OB-fold nucleic acid binding domain KHQ32_03345 PF00152 tRNA synthetases class II (D, K and N) KHQ32_03355 PF13307 Helicase C-terminal domain KHQ32_03355 PF04851 Type III restriction enzyme, res subunit KHQ32_03355 PF00929 Exonuclease KHQ32_03360 PF04226 Transglycosylase associated protein KHQ32_03430 PF08544 GHMP kinases C terminal KHQ32_03430 PF00288 GHMP kinases N terminal domain KHQ32_03435 PF01070 FMN-dependent dehydrogenase KHQ32_03440 PF00085 Thioredoxin KHQ32_03445 PF02096 60Kd inner membrane protein KHQ32_03455 PF00334 Nucleoside diphosphate kinase KHQ32_03465 PF13520 Amino acid permease KHQ32_03475 PF03601 Conserved hypothetical protein 698 KHQ32_03485 PF00535 Glycosyl transferase family 2 KHQ32_03495 PF02803 Thiolase, C-terminal domain KHQ32_03495 PF00108 Thiolase, N-terminal domain KHQ32_03505 PF01475 Ferric uptake regulator family KHQ32_03515 PF03649 Uncharacterised protein family (UPF0014) KHQ32_03520 PF00005 ABC transporter KHQ32_03525 PF12697 Alpha/beta hydrolase family KHQ32_03530 PF04198 Putative sugar-binding domain KHQ32_03540 PF00005 ABC transporter KHQ32_03550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ32_03550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ32_03555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KHQ32_03555 PF00364 Biotin-requiring enzyme KHQ32_03555 PF02817 e3 binding domain KHQ32_03560 PF02779 Transketolase, pyrimidine binding domain KHQ32_03560 PF02780 Transketolase, C-terminal domain KHQ32_03565 PF00676 Dehydrogenase E1 component KHQ32_03570 PF03099 Biotin/lipoate A/B protein ligase family KHQ32_03570 PF10437 Bacterial lipoate protein ligase C-terminus KHQ32_03575 PF00128 Alpha amylase, catalytic domain KHQ32_03590 PF13302 Acetyltransferase (GNAT) domain KHQ32_03605 PF03819 MazG nucleotide pyrophosphohydrolase domain KHQ32_03610 PF03641 Possible lysine decarboxylase KHQ32_03625 PF00356 Bacterial regulatory proteins, lacI family KHQ32_03635 PF01268 Formate--tetrahydrofolate ligase KHQ32_03640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KHQ32_03640 PF02843 Phosphoribosylglycinamide synthetase, C domain KHQ32_03640 PF02844 Phosphoribosylglycinamide synthetase, N domain KHQ32_03645 PF01808 AICARFT/IMPCHase bienzyme KHQ32_03645 PF02142 MGS-like domain KHQ32_03650 PF00551 Formyl transferase KHQ32_03655 PF00586 AIR synthase related protein, N-terminal domain KHQ32_03655 PF02769 AIR synthase related protein, C-terminal domain KHQ32_03660 PF13537 Glutamine amidotransferase domain KHQ32_03660 PF00156 Phosphoribosyl transferase domain KHQ32_03665 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KHQ32_03665 PF00586 AIR synthase related protein, N-terminal domain KHQ32_03665 PF02769 AIR synthase related protein, C-terminal domain KHQ32_03675 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KHQ32_03680 PF01259 SAICAR synthetase KHQ32_03685 PF02222 ATP-grasp domain KHQ32_03685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KHQ32_03690 PF00731 AIR carboxylase KHQ32_03695 PF04914 DltD protein KHQ32_03700 PF00550 Phosphopantetheine attachment site KHQ32_03705 PF03062 MBOAT, membrane-bound O-acyltransferase family KHQ32_03710 PF00501 AMP-binding enzyme KHQ32_03710 PF13193 AMP-binding enzyme C-terminal domain KHQ32_03725 PF00679 Elongation factor G C-terminus KHQ32_03725 PF00009 Elongation factor Tu GTP binding domain KHQ32_03725 PF06421 GTP-binding protein LepA C-terminus KHQ32_03740 PF08240 Alcohol dehydrogenase GroES-like domain KHQ32_03740 PF16912 Glucose dehydrogenase C-terminus KHQ32_03745 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KHQ32_03750 PF04991 LicD family KHQ32_03755 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ32_03765 PF07992 Pyridine nucleotide-disulphide oxidoreductase KHQ32_03765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KHQ32_03775 PF00253 Ribosomal protein S14p/S29e KHQ32_03780 PF00471 Ribosomal protein L33 KHQ32_03795 PF00871 Acetokinase family KHQ32_03800 PF01546 Peptidase family M20/M25/M40 KHQ32_03800 PF07687 Peptidase dimerisation domain KHQ32_03805 PF01784 NIF3 (NGG1p interacting factor 3) KHQ32_03810 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KHQ32_03825 PF00293 NUDIX domain KHQ32_03825 PF13344 Haloacid dehalogenase-like hydrolase KHQ32_03840 PF00056 lactate/malate dehydrogenase, NAD binding domain KHQ32_03840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KHQ32_03845 PF07690 Major Facilitator Superfamily KHQ32_03850 PF07155 ECF-type riboflavin transporter, S component KHQ32_03855 PF08543 Phosphomethylpyrimidine kinase KHQ32_03860 PF00216 Bacterial DNA-binding protein KHQ32_03865 PF01926 50S ribosome-binding GTPase KHQ32_03865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KHQ32_03870 PF00575 S1 RNA binding domain KHQ32_03875 PF02224 Cytidylate kinase KHQ32_03885 PF00271 Helicase conserved C-terminal domain KHQ32_03885 PF00270 DEAD/DEAH box helicase KHQ32_03895 PF12822 ECF transporter, substrate-specific component KHQ32_03900 PF00849 RNA pseudouridylate synthase KHQ32_03900 PF01479 S4 domain KHQ32_03905 PF04079 Segregation and condensation complex subunit ScpB KHQ32_03910 PF02616 Segregation and condensation protein ScpA KHQ32_03915 PF00583 Acetyltransferase (GNAT) family KHQ32_03920 PF02899 Phage integrase, N-terminal SAM-like domain KHQ32_03920 PF00589 Phage integrase family KHQ32_03925 PF17783 CvfB-like winged helix domain KHQ32_03925 PF13509 S1 domain KHQ32_03935 PF00230 Major intrinsic protein KHQ32_03940 PF00121 Triosephosphate isomerase KHQ32_03945 PF01266 FAD dependent oxidoreductase KHQ32_03945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KHQ32_03950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ32_03950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ32_03955 PF05651 Putative sugar diacid recognition KHQ32_03955 PF17853 GGDEF-like domain KHQ32_03955 PF13556 PucR C-terminal helix-turn-helix domain KHQ32_03960 PF00999 Sodium/hydrogen exchanger family KHQ32_03970 PF04607 Region found in RelA / SpoT proteins KHQ32_03970 PF13291 ACT domain KHQ32_03970 PF02824 TGS domain KHQ32_03975 PF01336 OB-fold nucleic acid binding domain KHQ32_03975 PF02811 PHP domain KHQ32_03975 PF14579 Helix-hairpin-helix motif KHQ32_03975 PF07733 Bacterial DNA polymerase III alpha NTPase domain KHQ32_03975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KHQ32_03985 PF00186 Dihydrofolate reductase KHQ32_03990 PF12848 ABC transporter KHQ32_03990 PF16326 ABC transporter C-terminal domain KHQ32_03990 PF00005 ABC transporter KHQ32_03995 PF12627 Probable RNA and SrmB- binding site of polymerase A KHQ32_03995 PF13735 tRNA nucleotidyltransferase domain 2 putative KHQ32_03995 PF01743 Poly A polymerase head domain KHQ32_04010 PF01380 SIS domain KHQ32_04025 PF03816 Cell envelope-related transcriptional attenuator domain KHQ32_04030 PF01765 Ribosome recycling factor KHQ32_04035 PF00696 Amino acid kinase family KHQ32_04040 PF00889 Elongation factor TS KHQ32_04135 PF03496 ADP-ribosyltransferase exoenzyme KHQ32_04135 PF04233 Phage Mu protein F like protein KHQ32_04145 PF17288 Terminase RNAseH like domain KHQ32_04145 PF04466 Phage terminase large subunit KHQ32_04315 PF00318 Ribosomal protein S2 KHQ32_04320 PF01541 GIY-YIG catalytic domain KHQ32_04325 PF05175 Methyltransferase small domain KHQ32_04330 PF01553 Acyltransferase KHQ32_04335 PF03672 Uncharacterised protein family (UPF0154) KHQ32_04340 PF05979 Bacterial protein of unknown function (DUF896) KHQ32_04345 PF00156 Phosphoribosyl transferase domain KHQ32_04350 PF01368 DHH family KHQ32_04350 PF17768 RecJ OB domain KHQ32_04350 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KHQ32_04350 PF02272 DHHA1 domain KHQ32_04355 PF00753 Metallo-beta-lactamase superfamily KHQ32_04355 PF12706 Beta-lactamase superfamily domain KHQ32_04370 PF00226 DnaJ domain KHQ32_04370 PF00684 DnaJ central domain KHQ32_04370 PF01556 DnaJ C terminal domain KHQ32_04375 PF00012 Hsp70 protein KHQ32_04380 PF01025 GrpE KHQ32_04385 PF01628 HrcA protein C terminal domain KHQ32_04385 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KHQ32_04400 PF00535 Glycosyl transferase family 2 KHQ32_04410 PF02397 Bacterial sugar transferase KHQ32_04415 PF00557 Metallopeptidase family M24 KHQ32_04420 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KHQ32_04425 PF01061 ABC-2 type transporter KHQ32_04430 PF00005 ABC transporter KHQ32_04430 PF01476 LysM domain KHQ32_04440 PF01467 Cytidylyltransferase-like KHQ32_04445 PF02073 Thermophilic metalloprotease (M29) KHQ32_04450 PF00313 'Cold-shock' DNA-binding domain KHQ32_04460 PF07690 Major Facilitator Superfamily KHQ32_04470 PF00485 Phosphoribulokinase / Uridine kinase family KHQ32_04475 PF13538 UvrD-like helicase C-terminal domain KHQ32_04480 PF00154 recA bacterial DNA recombination protein KHQ32_04485 PF02464 Competence-damaged protein KHQ32_04485 PF18146 Damage-inducible protein CinA KH domain KHQ32_04485 PF00994 Probable molybdopterin binding domain KHQ32_04490 PF01066 CDP-alcohol phosphatidyltransferase KHQ32_04495 PF13464 Domain of unknown function (DUF4115) KHQ32_04500 PF05193 Peptidase M16 inactive domain KHQ32_04500 PF00675 Insulinase (Peptidase family M16) KHQ32_04505 PF05193 Peptidase M16 inactive domain KHQ32_04510 PF13091 PLD-like domain KHQ32_04510 PF13396 Phospholipase_D-nuclease N-terminal KHQ32_04530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KHQ32_04530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KHQ32_04535 PF01336 OB-fold nucleic acid binding domain KHQ32_04535 PF01966 HD domain KHQ32_04540 PF02463 RecF/RecN/SMC N terminal domain KHQ32_04545 PF00149 Calcineurin-like phosphoesterase KHQ32_04555 PF06133 Control of competence regulator ComK, YlbF/YmcA KHQ32_04560 PF00912 Transglycosylase KHQ32_04560 PF00905 Penicillin binding protein transpeptidase domain KHQ32_04565 PF01316 Arginine repressor, DNA binding domain KHQ32_04565 PF02863 Arginine repressor, C-terminal domain KHQ32_04570 PF03485 Arginyl tRNA synthetase N terminal domain KHQ32_04570 PF05746 DALR anticodon binding domain KHQ32_04570 PF00750 tRNA synthetases class I (R) KHQ32_04580 PF02875 Mur ligase family, glutamate ligase domain KHQ32_04580 PF08245 Mur ligase middle domain KHQ32_04585 PF01725 Ham1 family KHQ32_04595 PF00781 Diacylglycerol kinase catalytic domain KHQ32_04600 PF02934 GatB/GatE catalytic domain KHQ32_04600 PF02637 GatB domain KHQ32_04605 PF01425 Amidase KHQ32_04610 PF02686 Glu-tRNAGln amidotransferase C subunit KHQ32_04615 PF01189 16S rRNA methyltransferase RsmB/F KHQ32_04615 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KHQ32_04615 PF17126 RsmF rRNA methyltransferase first C-terminal domain KHQ32_04635 PF00248 Aldo/keto reductase family KHQ32_04640 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KHQ32_04640 PF14572 Phosphoribosyl synthetase-associated domain KHQ32_04645 PF01180 Dihydroorotate dehydrogenase KHQ32_04650 PF09515 Thiamine transporter protein (Thia_YuaJ) KHQ32_04655 PF01487 Type I 3-dehydroquinase KHQ32_04660 PF01202 Shikimate kinase KHQ32_04665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KHQ32_04670 PF01264 Chorismate synthase KHQ32_04675 PF01761 3-dehydroquinate synthase KHQ32_04680 PF18152 DAHP synthase ferredoxin-like domain KHQ32_04680 PF00793 DAHP synthetase I family KHQ32_04685 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KHQ32_04685 PF08501 Shikimate dehydrogenase substrate binding domain KHQ32_04685 PF01488 Shikimate / quinate 5-dehydrogenase KHQ32_04695 PF00990 Diguanylate cyclase, GGDEF domain KHQ32_04705 PF12822 ECF transporter, substrate-specific component KHQ32_04710 PF00155 Aminotransferase class I and II KHQ32_04720 PF00155 Aminotransferase class I and II KHQ32_04730 PF00356 Bacterial regulatory proteins, lacI family KHQ32_04735 PF08544 GHMP kinases C terminal KHQ32_04735 PF00288 GHMP kinases N terminal domain KHQ32_04740 PF12822 ECF transporter, substrate-specific component KHQ32_04755 PF00950 ABC 3 transport family KHQ32_04755 PF02742 Iron dependent repressor, metal binding and dimerisation domain KHQ32_04765 PF04203 Sortase domain KHQ32_04770 PF06971 Putative DNA-binding protein N-terminus KHQ32_04770 PF02629 CoA binding domain KHQ32_04775 PF00270 DEAD/DEAH box helicase KHQ32_04775 PF00271 Helicase conserved C-terminal domain KHQ32_04780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KHQ32_04785 PF01938 TRAM domain KHQ32_04785 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ32_04790 PF01435 Peptidase family M48 KHQ32_04795 PF04011 LemA family KHQ32_04810 PF13673 Acetyltransferase (GNAT) domain KHQ32_04830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KHQ32_04830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KHQ32_04830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KHQ32_04830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KHQ32_04835 PF03275 UDP-galactopyranose mutase KHQ32_04840 PF10397 Adenylosuccinate lyase C-terminus KHQ32_04840 PF00206 Lyase KHQ32_04850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KHQ32_04850 PF02142 MGS-like domain KHQ32_04850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KHQ32_04855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KHQ32_04855 PF00117 Glutamine amidotransferase class-I KHQ32_04860 PF00156 Phosphoribosyl transferase domain KHQ32_04865 PF00849 RNA pseudouridylate synthase KHQ32_04865 PF01479 S4 domain KHQ32_04875 PF03553 Na+/H+ antiporter family KHQ32_04880 PF00324 Amino acid permease KHQ32_04885 PF01197 Ribosomal protein L31 KHQ32_04890 PF00679 Elongation factor G C-terminus KHQ32_04890 PF00009 Elongation factor Tu GTP binding domain KHQ32_04890 PF03144 Elongation factor Tu domain 2 KHQ32_04890 PF06421 GTP-binding protein LepA C-terminus KHQ32_04895 PF00162 Phosphoglycerate kinase KHQ32_04900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KHQ32_04900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KHQ32_04925 PF02872 5'-nucleotidase, C-terminal domain KHQ32_04925 PF00149 Calcineurin-like phosphoesterase KHQ32_04930 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_04935 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_04940 PF00005 ABC transporter KHQ32_04960 PF01223 DNA/RNA non-specific endonuclease KHQ32_04970 PF03613 PTS system mannose/fructose/sorbose family IID component KHQ32_04975 PF03609 PTS system sorbose-specific iic component KHQ32_04980 PF03610 PTS system fructose IIA component KHQ32_04980 PF03830 PTS system sorbose subfamily IIB component KHQ32_05045 PF00013 KH domain KHQ32_05045 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KHQ32_05045 PF01138 3' exoribonuclease family, domain 1 KHQ32_05045 PF03725 3' exoribonuclease family, domain 2 KHQ32_05045 PF00575 S1 RNA binding domain KHQ32_05050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KHQ32_05055 PF09335 SNARE associated Golgi protein KHQ32_05060 PF01192 RNA polymerase Rpb6 KHQ32_05065 PF00625 Guanylate kinase KHQ32_05070 PF13476 AAA domain KHQ32_05075 PF01316 Arginine repressor, DNA binding domain KHQ32_05075 PF02863 Arginine repressor, C-terminal domain KHQ32_05080 PF01479 S4 domain KHQ32_05080 PF01728 FtsJ-like methyltransferase KHQ32_05085 PF00348 Polyprenyl synthetase KHQ32_05090 PF02609 Exonuclease VII small subunit KHQ32_05095 PF02601 Exonuclease VII, large subunit KHQ32_05095 PF13742 OB-fold nucleic acid binding domain KHQ32_05100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KHQ32_05100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KHQ32_05105 PF07155 ECF-type riboflavin transporter, S component KHQ32_05120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KHQ32_05125 PF03129 Anticodon binding domain KHQ32_05125 PF02824 TGS domain KHQ32_05125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KHQ32_05125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ32_05135 PF01119 DNA mismatch repair protein, C-terminal domain KHQ32_05135 PF08676 MutL C terminal dimerisation domain KHQ32_05140 PF01624 MutS domain I KHQ32_05140 PF05188 MutS domain II KHQ32_05140 PF05192 MutS domain III KHQ32_05140 PF05190 MutS family domain IV KHQ32_05140 PF00488 MutS domain V KHQ32_05150 PF05636 HIGH Nucleotidyl Transferase KHQ32_05165 PF01966 HD domain KHQ32_05170 PF01467 Cytidylyltransferase-like KHQ32_05180 PF01926 50S ribosome-binding GTPase KHQ32_05190 PF01820 D-ala D-ala ligase N-terminus KHQ32_05190 PF07478 D-ala D-ala ligase C-terminus KHQ32_05205 PF13520 Amino acid permease KHQ32_05210 PF00118 TCP-1/cpn60 chaperonin family KHQ32_05215 PF00166 Chaperonin 10 Kd subunit KHQ32_05220 PF12848 ABC transporter KHQ32_05220 PF00005 ABC transporter KHQ32_05220 PF16326 ABC transporter C-terminal domain KHQ32_05225 PF02875 Mur ligase family, glutamate ligase domain KHQ32_05225 PF08245 Mur ligase middle domain KHQ32_05230 PF08264 Anticodon-binding domain of tRNA KHQ32_05230 PF10458 Valyl tRNA synthetase tRNA binding arm KHQ32_05230 PF00133 tRNA synthetases class I (I, L, M and V) KHQ32_05235 PF01810 LysE type translocator KHQ32_05240 PF00582 Universal stress protein family KHQ32_05255 PF16193 AAA C-terminal domain KHQ32_05255 PF12002 MgsA AAA+ ATPase C terminal KHQ32_05255 PF05496 Holliday junction DNA helicase RuvB P-loop domain KHQ32_05270 PF00009 Elongation factor Tu GTP binding domain KHQ32_05270 PF03144 Elongation factor Tu domain 2 KHQ32_05270 PF16658 Class II release factor RF3, C-terminal domain KHQ32_05280 PF04167 Protein of unknown function (DUF402) KHQ32_05285 PF02631 RecX family KHQ32_05295 PF00005 ABC transporter KHQ32_05300 PF00005 ABC transporter KHQ32_05305 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_05310 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_05315 PF12849 PBP superfamily domain KHQ32_05335 PF01906 Putative heavy-metal-binding KHQ32_05340 PF13344 Haloacid dehalogenase-like hydrolase KHQ32_05345 PF06265 Protein of unknown function (DUF1027) KHQ32_05350 PF02872 5'-nucleotidase, C-terminal domain KHQ32_05360 PF01321 Creatinase/Prolidase N-terminal domain KHQ32_05360 PF00557 Metallopeptidase family M24 KHQ32_05365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KHQ32_05365 PF13378 Enolase C-terminal domain-like KHQ32_05380 PF00561 alpha/beta hydrolase fold KHQ32_05385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ32_05385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ32_05385 PF16582 Middle domain of thiamine pyrophosphate KHQ32_05390 PF00425 chorismate binding enzyme KHQ32_05405 PF00884 Sulfatase KHQ32_05410 PF13520 Amino acid permease KHQ32_05415 PF03390 2-hydroxycarboxylate transporter family KHQ32_05420 PF07690 Major Facilitator Superfamily KHQ32_05430 PF08240 Alcohol dehydrogenase GroES-like domain KHQ32_05430 PF00107 Zinc-binding dehydrogenase KHQ32_05435 PF01048 Phosphorylase superfamily KHQ32_05440 PF01676 Metalloenzyme superfamily KHQ32_05445 PF01791 DeoC/LacD family aldolase KHQ32_05450 PF02378 Phosphotransferase system, EIIC KHQ32_05460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KHQ32_05465 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KHQ32_05470 PF00005 ABC transporter KHQ32_05475 PF01032 FecCD transport family KHQ32_05480 PF01497 Periplasmic binding protein KHQ32_05500 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ32_05500 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ32_05505 PF01016 Ribosomal L27 protein KHQ32_05510 PF00829 Ribosomal prokaryotic L21 protein KHQ32_05515 PF07690 Major Facilitator Superfamily KHQ32_05545 PF00120 Glutamine synthetase, catalytic domain KHQ32_05545 PF03951 Glutamine synthetase, beta-Grasp domain KHQ32_05550 PF13411 MerR HTH family regulatory protein KHQ32_05570 PF00480 ROK family KHQ32_05585 PF01812 5-formyltetrahydrofolate cyclo-ligase family KHQ32_05590 PF03717 Penicillin-binding Protein dimerisation domain KHQ32_05590 PF00905 Penicillin binding protein transpeptidase domain KHQ32_05600 PF03449 Transcription elongation factor, N-terminal KHQ32_05600 PF01272 Transcription elongation factor, GreA/GreB, C-term KHQ32_05605 PF02618 YceG-like family KHQ32_05610 PF03484 tRNA synthetase B5 domain KHQ32_05610 PF03147 Ferredoxin-fold anticodon binding domain KHQ32_05610 PF03483 B3/4 domain KHQ32_05610 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KHQ32_05610 PF01588 Putative tRNA binding domain KHQ32_05615 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KHQ32_05615 PF01409 tRNA synthetases class II core domain (F) KHQ32_05620 PF01638 HxlR-like helix-turn-helix KHQ32_05625 PF02388 FemAB family KHQ32_05630 PF00588 SpoU rRNA Methylase family KHQ32_05630 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ32_05650 PF00472 RF-1 domain KHQ32_05650 PF03462 PCRF domain KHQ32_05655 PF07517 SecA DEAD-like domain KHQ32_05655 PF01043 SecA preprotein cross-linking domain KHQ32_05655 PF07516 SecA Wing and Scaffold domain KHQ32_05660 PF00749 tRNA synthetases class I (E and Q), catalytic domain KHQ32_05665 PF18073 Rubredoxin metal binding domain KHQ32_05670 PF00692 dUTPase KHQ32_05680 PF00877 NlpC/P60 family KHQ32_05690 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ32_05690 PF17871 AAA lid domain KHQ32_05690 PF07724 AAA domain (Cdc48 subfamily) KHQ32_05690 PF00004 ATPase family associated with various cellular activities (AAA) KHQ32_05695 PF00107 Zinc-binding dehydrogenase KHQ32_05695 PF08240 Alcohol dehydrogenase GroES-like domain KHQ32_05700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ32_05700 PF00205 Thiamine pyrophosphate enzyme, central domain KHQ32_05700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ32_05705 PF03306 Alpha-acetolactate decarboxylase KHQ32_05730 PF00582 Universal stress protein family KHQ32_05735 PF01783 Ribosomal L32p protein family KHQ32_05745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KHQ32_05745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KHQ32_05750 PF00574 Clp protease KHQ32_05760 PF02650 WhiA C-terminal HTH domain KHQ32_05760 PF14527 WhiA LAGLIDADG-like domain KHQ32_05760 PF10298 WhiA N-terminal LAGLIDADG-like domain KHQ32_05765 PF01933 Uncharacterised protein family UPF0052 KHQ32_05770 PF03668 P-loop ATPase protein family KHQ32_05775 PF00005 ABC transporter KHQ32_05775 PF17755 UvrA DNA-binding domain KHQ32_05775 PF17760 UvrA interaction domain KHQ32_05785 PF02447 GntP family permease KHQ32_05805 PF00380 Ribosomal protein S9/S16 KHQ32_05810 PF00572 Ribosomal protein L13 KHQ32_05815 PF01416 tRNA pseudouridine synthase KHQ32_05820 PF02361 Cobalt transport protein KHQ32_05825 PF00005 ABC transporter KHQ32_05830 PF00005 ABC transporter KHQ32_05835 PF01757 Acyltransferase family KHQ32_05850 PF01297 Zinc-uptake complex component A periplasmic KHQ32_05855 PF00950 ABC 3 transport family KHQ32_05860 PF00005 ABC transporter KHQ32_05870 PF01641 SelR domain KHQ32_05875 PF00542 Ribosomal protein L7/L12 C-terminal domain KHQ32_05875 PF16320 Ribosomal protein L7/L12 dimerisation domain KHQ32_05880 PF00466 Ribosomal protein L10 KHQ32_05885 PF00687 Ribosomal protein L1p/L10e family KHQ32_05890 PF03946 Ribosomal protein L11, N-terminal domain KHQ32_05890 PF00298 Ribosomal protein L11, RNA binding domain KHQ32_05895 PF02357 Transcription termination factor nusG KHQ32_05895 PF00467 KOW motif KHQ32_05900 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KHQ32_05905 PF00471 Ribosomal protein L33 KHQ32_05915 PF08032 RNA 2'-O ribose methyltransferase substrate binding KHQ32_05915 PF00588 SpoU rRNA Methylase family KHQ32_05920 PF00636 Ribonuclease III domain KHQ32_05925 PF01406 tRNA synthetases class I (C) catalytic domain KHQ32_05925 PF09190 DALR domain KHQ32_05935 PF02540 NAD synthase KHQ32_05940 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KHQ32_05940 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KHQ32_05940 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KHQ32_05945 PF03180 NLPA lipoprotein KHQ32_05950 PF09383 NIL domain KHQ32_05950 PF00005 ABC transporter KHQ32_05955 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_05960 PF01196 Ribosomal protein L17 KHQ32_05965 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KHQ32_05965 PF01000 RNA polymerase Rpb3/RpoA insert domain KHQ32_05965 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KHQ32_05970 PF00411 Ribosomal protein S11 KHQ32_05975 PF00416 Ribosomal protein S13/S18 KHQ32_05980 PF00444 Ribosomal protein L36 KHQ32_05985 PF01176 Translation initiation factor 1A / IF-1 KHQ32_05990 PF05191 Adenylate kinase, active site lid KHQ32_05995 PF00344 SecY translocase KHQ32_06000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KHQ32_06005 PF00327 Ribosomal protein L30p/L7e KHQ32_06010 PF03719 Ribosomal protein S5, C-terminal domain KHQ32_06010 PF00333 Ribosomal protein S5, N-terminal domain KHQ32_06015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KHQ32_06020 PF00347 Ribosomal protein L6 KHQ32_06025 PF00410 Ribosomal protein S8 KHQ32_06030 PF00673 ribosomal L5P family C-terminus KHQ32_06030 PF00281 Ribosomal protein L5 KHQ32_06035 PF00467 KOW motif KHQ32_06035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KHQ32_06040 PF00238 Ribosomal protein L14p/L23e KHQ32_06045 PF00366 Ribosomal protein S17 KHQ32_06050 PF00831 Ribosomal L29 protein KHQ32_06055 PF00252 Ribosomal protein L16p/L10e KHQ32_06060 PF00189 Ribosomal protein S3, C-terminal domain KHQ32_06060 PF07650 KH domain KHQ32_06065 PF00237 Ribosomal protein L22p/L17e KHQ32_06070 PF00203 Ribosomal protein S19 KHQ32_06075 PF03947 Ribosomal Proteins L2, C-terminal domain KHQ32_06075 PF00181 Ribosomal Proteins L2, RNA binding domain KHQ32_06080 PF00276 Ribosomal protein L23 KHQ32_06085 PF00573 Ribosomal protein L4/L1 family KHQ32_06090 PF00297 Ribosomal protein L3 KHQ32_06095 PF00338 Ribosomal protein S10p/S20e KHQ32_06100 PF00348 Polyprenyl synthetase KHQ32_06105 PF00814 Glycoprotease family KHQ32_06120 PF00814 Glycoprotease family KHQ32_06125 PF16363 GDP-mannose 4,6 dehydratase KHQ32_06135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KHQ32_06145 PF06153 Cyclic-di-AMP receptor KHQ32_06150 PF02223 Thymidylate kinase KHQ32_06160 PF13662 Toprim domain KHQ32_06160 PF02132 RecR protein KHQ32_06165 PF02575 YbaB/EbfC DNA-binding family KHQ32_06170 PF12169 DNA polymerase III subunits gamma and tau domain III KHQ32_06180 PF14437 MafB19-like deaminase KHQ32_06185 PF05175 Methyltransferase small domain KHQ32_06225 PF00465 Iron-containing alcohol dehydrogenase KHQ32_06230 PF05000 RNA polymerase Rpb1, domain 4 KHQ32_06230 PF04983 RNA polymerase Rpb1, domain 3 KHQ32_06230 PF04998 RNA polymerase Rpb1, domain 5 KHQ32_06230 PF04997 RNA polymerase Rpb1, domain 1 KHQ32_06230 PF00623 RNA polymerase Rpb1, domain 2 KHQ32_06240 PF10431 C-terminal, D2-small domain, of ClpB protein KHQ32_06240 PF02861 Clp amino terminal domain, pathogenicity island component KHQ32_06240 PF17871 AAA lid domain KHQ32_06240 PF07724 AAA domain (Cdc48 subfamily) KHQ32_06240 PF00004 ATPase family associated with various cellular activities (AAA) KHQ32_06245 PF17727 CtsR C-terminal dimerization domain KHQ32_06245 PF05848 CtsR N-terminal HTH domain KHQ32_06265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KHQ32_06265 PF02403 Seryl-tRNA synthetase N-terminal domain KHQ32_06270 PF01712 Deoxynucleoside kinase KHQ32_06275 PF02557 D-alanyl-D-alanine carboxypeptidase KHQ32_06280 PF07943 Penicillin-binding protein 5, C-terminal domain KHQ32_06280 PF00768 D-alanyl-D-alanine carboxypeptidase KHQ32_06285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KHQ32_06285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KHQ32_06290 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ32_06290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ32_06295 PF00231 ATP synthase KHQ32_06300 PF02874 ATP synthase alpha/beta family, beta-barrel domain KHQ32_06300 PF00306 ATP synthase alpha/beta chain, C terminal domain KHQ32_06300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KHQ32_06305 PF00213 ATP synthase delta (OSCP) subunit KHQ32_06310 PF00430 ATP synthase B/B' CF(0) KHQ32_06315 PF00137 ATP synthase subunit C KHQ32_06320 PF00119 ATP synthase A chain KHQ32_06325 PF00860 Permease family KHQ32_06340 PF00464 Serine hydroxymethyltransferase KHQ32_06345 PF03481 Putative GTP-binding controlling metal-binding KHQ32_06345 PF01300 Telomere recombination KHQ32_06350 PF05175 Methyltransferase small domain KHQ32_06355 PF03462 PCRF domain KHQ32_06355 PF00472 RF-1 domain KHQ32_06360 PF00265 Thymidine kinase KHQ32_06365 PF07685 CobB/CobQ-like glutamine amidotransferase domain KHQ32_06370 PF08353 Domain of unknown function (DUF1727) KHQ32_06370 PF08245 Mur ligase middle domain KHQ32_06375 PF01238 Phosphomannose isomerase type I KHQ32_06385 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ32_06385 PF00294 pfkB family carbohydrate kinase KHQ32_06390 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KHQ32_06390 PF00294 pfkB family carbohydrate kinase KHQ32_06395 PF01773 Na+ dependent nucleoside transporter N-terminus KHQ32_06395 PF07662 Na+ dependent nucleoside transporter C-terminus KHQ32_06400 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ32_06405 PF01156 Inosine-uridine preferring nucleoside hydrolase KHQ32_06420 PF00005 ABC transporter KHQ32_06420 PF00664 ABC transporter transmembrane region KHQ32_06425 PF00664 ABC transporter transmembrane region KHQ32_06425 PF00005 ABC transporter KHQ32_06430 PF13167 GTP-binding GTPase N-terminal KHQ32_06430 PF16360 GTP-binding GTPase Middle Region KHQ32_06430 PF01926 50S ribosome-binding GTPase KHQ32_06435 PF00300 Histidine phosphatase superfamily (branch 1) KHQ32_06450 PF03167 Uracil DNA glycosylase superfamily KHQ32_06455 PF02447 GntP family permease KHQ32_06460 PF03372 Endonuclease/Exonuclease/phosphatase family KHQ32_06465 PF00465 Iron-containing alcohol dehydrogenase KHQ32_06465 PF00171 Aldehyde dehydrogenase family KHQ32_06475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KHQ32_06475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KHQ32_06480 PF13520 Amino acid permease KHQ32_06485 PF00696 Amino acid kinase family KHQ32_06490 PF05649 Peptidase family M13 KHQ32_06490 PF01431 Peptidase family M13 KHQ32_06505 PF09363 XFP C-terminal domain KHQ32_06505 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase KHQ32_06505 PF09364 XFP N-terminal domain KHQ32_06510 PF00392 Bacterial regulatory proteins, gntR family KHQ32_06510 PF07702 UTRA domain KHQ32_06515 PF01966 HD domain KHQ32_06540 PF12848 ABC transporter KHQ32_06540 PF00005 ABC transporter KHQ32_06550 PF00005 ABC transporter KHQ32_06560 PF01047 MarR family KHQ32_06565 PF10263 SprT-like family KHQ32_06605 PF00854 POT family KHQ32_06615 PF00989 PAS fold KHQ32_06615 PF00512 His Kinase A (phospho-acceptor) domain KHQ32_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_06615 PF16736 Single Cache-like KHQ32_06620 PF00072 Response regulator receiver domain KHQ32_06620 PF00486 Transcriptional regulatory protein, C terminal KHQ32_06630 PF06071 Protein of unknown function (DUF933) KHQ32_06630 PF01926 50S ribosome-binding GTPase KHQ32_06635 PF06107 Bacterial protein of unknown function (DUF951) KHQ32_06640 PF17762 HTH domain found in ParB protein KHQ32_06640 PF02195 ParB-like nuclease domain KHQ32_06645 PF13614 AAA domain KHQ32_06650 PF02527 rRNA small subunit methyltransferase G KHQ32_06655 PF00730 HhH-GPD superfamily base excision DNA repair protein KHQ32_06655 PF14815 NUDIX domain KHQ32_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KHQ32_06660 PF00512 His Kinase A (phospho-acceptor) domain KHQ32_06665 PF00072 Response regulator receiver domain KHQ32_06665 PF00486 Transcriptional regulatory protein, C terminal KHQ32_06670 PF00501 AMP-binding enzyme KHQ32_06670 PF13193 AMP-binding enzyme C-terminal domain KHQ32_06675 PF00378 Enoyl-CoA hydratase/isomerase KHQ32_06680 PF03061 Thioesterase superfamily KHQ32_06685 PF00857 Isochorismatase family KHQ32_06695 PF02229 Transcriptional Coactivator p15 (PC4) KHQ32_06700 PF00710 Asparaginase, N-terminal KHQ32_06700 PF17763 Glutaminase/Asparaginase C-terminal domain KHQ32_06705 PF13520 Amino acid permease KHQ32_06715 PF16884 N-terminal domain of oxidoreductase KHQ32_06715 PF00107 Zinc-binding dehydrogenase KHQ32_06725 PF00230 Major intrinsic protein KHQ32_06735 PF01381 Helix-turn-helix KHQ32_06760 PF03853 YjeF-related protein N-terminus KHQ32_06775 PF13419 Haloacid dehalogenase-like hydrolase KHQ32_06780 PF03633 Glycosyl hydrolase family 65, C-terminal domain KHQ32_06780 PF03632 Glycosyl hydrolase family 65 central catalytic domain KHQ32_06780 PF03636 Glycosyl hydrolase family 65, N-terminal domain KHQ32_06785 PF00367 phosphotransferase system, EIIB KHQ32_06785 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KHQ32_06785 PF02378 Phosphotransferase system, EIIC KHQ32_06790 PF02378 Phosphotransferase system, EIIC KHQ32_06790 PF00367 phosphotransferase system, EIIB KHQ32_06790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KHQ32_06795 PF00392 Bacterial regulatory proteins, gntR family KHQ32_06795 PF07702 UTRA domain KHQ32_06800 PF01381 Helix-turn-helix KHQ32_06810 PF02082 Transcriptional regulator KHQ32_06815 PF00690 Cation transporter/ATPase, N-terminus KHQ32_06815 PF00689 Cation transporting ATPase, C-terminus KHQ32_06820 PF01207 Dihydrouridine synthase (Dus) KHQ32_06825 PF01381 Helix-turn-helix KHQ32_06845 PF07859 alpha/beta hydrolase fold KHQ32_06850 PF00324 Amino acid permease KHQ32_06855 PF01594 AI-2E family transporter KHQ32_06865 PF00497 Bacterial extracellular solute-binding proteins, family 3 KHQ32_06870 PF00528 Binding-protein-dependent transport system inner membrane component KHQ32_06875 PF00005 ABC transporter KHQ32_06885 PF01022 Bacterial regulatory protein, arsR family KHQ32_06890 PF00403 Heavy-metal-associated domain KHQ32_06895 PF00440 Bacterial regulatory proteins, tetR family KHQ32_06900 PF01938 TRAM domain KHQ32_06900 PF05958 tRNA (Uracil-5-)-methyltransferase KHQ32_06905 PF00905 Penicillin binding protein transpeptidase domain KHQ32_06905 PF00912 Transglycosylase KHQ32_06910 PF00958 GMP synthase C terminal domain KHQ32_06910 PF02540 NAD synthase KHQ32_06910 PF00117 Glutamine amidotransferase class-I KHQ32_06920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KHQ32_06920 PF00205 Thiamine pyrophosphate enzyme, central domain KHQ32_06920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KHQ32_06930 PF00106 short chain dehydrogenase KHQ32_06935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KHQ32_06940 PF00248 Aldo/keto reductase family KHQ32_06945 PF01638 HxlR-like helix-turn-helix KHQ32_06950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KHQ32_06950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KHQ32_06965 PF00075 RNase H KHQ32_06970 PF02386 Cation transport protein KHQ32_06975 PF02590 Predicted SPOUT methyltransferase KHQ32_06980 PF00324 Amino acid permease KHQ32_06985 PF02254 TrkA-N domain KHQ32_06985 PF02080 TrkA-C domain KHQ32_06990 PF10502 Signal peptidase, peptidase S26 KHQ32_06995 PF02096 60Kd inner membrane protein KHQ32_07000 PF00825 Ribonuclease P