locus-tag	class	description
BF29_1	COG2171	N-acyltransferase activity
BF29_100	COG0628	permease
BF29_1000	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BF29_1000	COG1796	DNA polymerase
BF29_1001	COG1286	toxin biosynthetic process
BF29_1002	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
BF29_1004	COG0789	Transcriptional regulator
BF29_1004	COG4978	Transcriptional regulator
BF29_1006	COG0072	phenylalanine-tRNA ligase activity
BF29_1006	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BF29_1007	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BF29_1008	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BF29_1012	COG2963	transposase activity
BF29_1013	COG2801	Transposase and inactivated derivatives
BF29_1015	COG1695	Transcriptional regulator
BF29_1019	COG0431	NADPH-dependent FMN reductase
BF29_1023	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BF29_1025	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BF29_1027	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BF29_1029	COG1484	DNA-dependent DNA replication
BF29_103	COG0385	Bile acid
BF29_1030	COG3611	Membrane attachment protein
BF29_1031	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BF29_1033	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BF29_1034	COG0237	dephospho-CoA kinase activity
BF29_1035	COG1971	Probably functions as a manganese efflux pump
BF29_1036	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BF29_1037	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BF29_1037	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BF29_1039	COG0039	L-malate dehydrogenase activity
BF29_1040	COG0538	isocitrate dehydrogenase activity
BF29_1041	COG0372	Belongs to the citrate synthase family
BF29_1042	COG2707	UPF0756 membrane protein
BF29_1043	COG0628	permease
BF29_1045	COG0205	6-phosphofructokinase activity
BF29_1046	COG0825	malonyl-CoA metabolic process
BF29_1047	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BF29_1048	COG0281	malic enzyme
BF29_1049	COG0587	DNA-directed DNA polymerase activity
BF29_105	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
BF29_1052	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BF29_1054	COG4109	DRTGG domain
BF29_1055	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BF29_1056	COG0006	proline dipeptidase activity
BF29_1058	COG0589	response to stress
BF29_106	COG1561	YicC-like family, N-terminal region
BF29_1060	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BF29_1061	COG0827	DNA restriction-modification system
BF29_1062	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BF29_1063	COG3874	Sporulation protein YtfJ
BF29_1065	COG1714	RDD family
BF29_1066	COG0616	signal peptide processing
BF29_1067	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BF29_1069	COG0301	tRNA thio-modification
BF29_107	COG2052	Domain of unknown function (DUF370)
BF29_1070	COG1104	cysteine desulfurase activity
BF29_1071	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
BF29_1072	COG1309	transcriptional regulator
BF29_1073	COG1956	GAF domain-containing protein
BF29_1074	COG2203	Gaf domain
BF29_1074	COG2199	diguanylate cyclase activity
BF29_1075	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BF29_1078	COG0506	proline dehydrogenase activity
BF29_1079	COG1012	belongs to the aldehyde dehydrogenase family
BF29_108	COG0194	GDP metabolic process
BF29_1080	COG3290	protein histidine kinase activity
BF29_1080	COG3829	transcription factor binding
BF29_1082	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BF29_1083	COG3383	formate dehydrogenase (NAD+) activity
BF29_1084	COG2427	Protein of unknown function (DUF1641)
BF29_1085	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BF29_1086	COG0315	cyclic pyranopterin monophosphate synthase activity
BF29_1087	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BF29_1088	COG0314	molybdopterin synthase activity
BF29_1089	COG1763	Mo-molybdopterin cofactor biosynthetic process
BF29_109	COG1758	RNA polymerase activity
BF29_1090	COG0303	'Molybdopterin
BF29_1093	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BF29_1094	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BF29_1095	COG4149	molybdate abc transporter
BF29_1097	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BF29_1098	COG0454	-acetyltransferase
BF29_1099	COG0517	IMP dehydrogenase activity
BF29_110	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BF29_1100	COG0123	including yeast histone deacetylase and acetoin utilization protein
BF29_1102	COG1605	Chorismate mutase
BF29_1102	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
BF29_1103	COG4980	gas vesicle protein
BF29_1105	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BF29_1106	COG1674	ftsk spoiiie
BF29_1108	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BF29_1109	COG4848	Belongs to the UPF0354 family
BF29_111	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BF29_1110	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_1111	COG2208	phosphoserine phosphatase activity
BF29_1112	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BF29_1113	COG0784	Response regulator, receiver
BF29_1113	COG5002	protein histidine kinase activity
BF29_1114	COG5584	Small secreted protein
BF29_1115	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BF29_1117	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BF29_1119	COG0510	thiamine kinase activity
BF29_112	COG0242	peptide deformylase activity
BF29_1125	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BF29_1126	COG1349	DNA-binding transcription factor activity
BF29_1127	COG2244	polysaccharide biosynthetic process
BF29_113	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BF29_1131	COG0495	leucyl-tRNA aminoacylation
BF29_1132	COG2814	Major facilitator Superfamily
BF29_1135	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
BF29_1137	COG2267	carboxylic ester hydrolase activity
BF29_1138	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BF29_1139	COG0367	asparagine synthase
BF29_114	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BF29_114	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BF29_1140	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BF29_1145	COG1506	peptidase
BF29_1146	COG0655	NAD(P)H dehydrogenase (quinone) activity
BF29_1148	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BF29_1149	COG1116	anion transmembrane transporter activity
BF29_115	COG0631	protein serine/threonine phosphatase activity
BF29_1150	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BF29_1153	COG0783	Belongs to the Dps family
BF29_1154	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BF29_1156	COG0803	Belongs to the bacterial solute-binding protein 9 family
BF29_1158	COG4948	Mandelate Racemase Muconate Lactonizing
BF29_1159	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_116	COG0515	serine threonine protein kinase
BF29_116	COG2815	serine threonine protein kinase
BF29_1160	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BF29_1161	COG0596	Alpha beta hydrolase
BF29_1162	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
BF29_1163	COG1169	isochorismate synthase
BF29_1164	COG1575	Belongs to the MenA family. Type 1 subfamily
BF29_117	COG1162	GTPase activity
BF29_118	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BF29_119	COG1564	THIamine pyrophosphokinase
BF29_1194	COG1285	pathogenesis
BF29_1197	COG2217	Heavy metal translocating P-type atpase
BF29_1198	COG2608	mercury ion transmembrane transporter activity
BF29_12	COG1982	Orn Lys Arg decarboxylase major
BF29_120	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BF29_1200	COG1522	sequence-specific DNA binding
BF29_1205	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BF29_1211	COG5002	protein histidine kinase activity
BF29_1212	COG0745	RESPONSE REGULATOR receiver
BF29_1213	COG1388	LysM domain
BF29_1215	COG4221	oxidoreductase activity
BF29_1216	COG0726	polysaccharide deacetylase
BF29_122	COG1302	Protein conserved in bacteria
BF29_1221	COG0038	chloride channel
BF29_1222	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BF29_1223	COG1937	Protein conserved in bacteria
BF29_1224	COG1525	nuclease
BF29_1225	COG2190	(PTS) system
BF29_1227	COG2963	transposase activity
BF29_1228	COG2801	Transposase and inactivated derivatives
BF29_123	COG1461	Dihydroxyacetone kinase
BF29_1231	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_1232	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
BF29_1235	COG1012	belongs to the aldehyde dehydrogenase family
BF29_1239	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BF29_124	COG1760	l-serine dehydratase
BF29_1241	COG2155	Conserved Protein
BF29_1243	COG1098	S1 RNA binding domain
BF29_1245	COG1902	pentaerythritol trinitrate reductase activity
BF29_1246	COG0656	L-ascorbic acid biosynthetic process
BF29_125	COG1760	l-serine dehydratase
BF29_1250	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BF29_1258	COG2814	Major facilitator Superfamily
BF29_1259	COG2050	protein possibly involved in aromatic compounds catabolism
BF29_126	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BF29_1262	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BF29_1264	COG0697	spore germination
BF29_1266	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BF29_1267	COG3584	3D domain protein
BF29_1269	COG1252	NADH dehydrogenase
BF29_127	COG1349	DNA-binding transcription factor activity
BF29_1270	COG0492	ferredoxin-NADP+ reductase activity
BF29_1272	COG0726	polysaccharide deacetylase
BF29_1279	COG0316	Belongs to the HesB IscA family
BF29_128	COG0416	fatty acid biosynthetic process
BF29_1280	COG4837	Protein of unknown function (DUF1462)
BF29_1281	COG2963	transposase activity
BF29_1282	COG2801	Transposase and inactivated derivatives
BF29_1284	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BF29_1285	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BF29_1287	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BF29_1288	COG0647	UMP catabolic process
BF29_1289	COG2445	Protein of unknown function DUF86
BF29_129	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BF29_1290	COG4470	Protein conserved in bacteria
BF29_1291	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BF29_1292	COG0739	heme binding
BF29_1294	COG3377	Domain of unknown function (DUF1805)
BF29_1295	COG0737	Belongs to the 5'-nucleotidase family
BF29_1296	COG0719	Fe-S assembly protein
BF29_1297	COG0822	iron-sulfur transferase activity
BF29_1298	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BF29_1299	COG0719	Fe-S assembly protein
BF29_130	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_1300	COG0396	ATPase activity
BF29_1302	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_1303	COG0509	glycine decarboxylation via glycine cleavage system
BF29_1304	COG1393	Belongs to the ArsC family
BF29_1305	COG1960	acyl-CoA dehydrogenase activity
BF29_1306	COG0183	Belongs to the thiolase family
BF29_1307	COG1250	3-hydroxyacyl-CoA dehydrogenase
BF29_1307	COG1024	Enoyl-CoA hydratase
BF29_1310	COG5577	PFAM Coat F domain
BF29_1311	COG0772	Belongs to the SEDS family
BF29_1312	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_1318	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BF29_132	COG0571	ribonuclease III activity
BF29_1320	COG0753	catalase activity
BF29_1321	COG0671	phosphoesterase, PA-phosphatase related
BF29_1323	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BF29_1326	COG1595	DNA-templated transcription, initiation
BF29_1327	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BF29_133	COG1196	nuclear chromosome segregation
BF29_1330	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BF29_1332	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BF29_1333	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_1334	COG2211	Major facilitator Superfamily
BF29_1335	COG1904	glucuronate isomerase
BF29_1336	COG2721	sulfolactate sulfo-lyase activity
BF29_1337	COG0246	Mannitol dehydrogenase
BF29_1339	COG0800	Aldolase
BF29_134	COG0552	protein localization to endoplasmic reticulum
BF29_1343	COG0488	(ABC) transporter
BF29_1346	COG2963	transposase activity
BF29_1347	COG2801	Transposase and inactivated derivatives
BF29_135	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
BF29_1357	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BF29_1358	COG0557	exoribonuclease II activity
BF29_136	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BF29_1360	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BF29_1361	COG0148	phosphopyruvate hydratase activity
BF29_1363	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BF29_1365	COG0126	phosphoglycerate kinase activity
BF29_1369	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BF29_1375	COG3383	formate dehydrogenase (NAD+) activity
BF29_1378	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BF29_138	COG1837	Belongs to the UPF0109 family
BF29_1381	COG4608	Belongs to the ABC transporter superfamily
BF29_1382	COG0791	NLP P60 protein
BF29_1383	COG4166	transmembrane transport
BF29_1384	COG0444	Belongs to the ABC transporter superfamily
BF29_1385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BF29_1386	COG0601	transmembrane transport
BF29_1387	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BF29_1388	COG0598	Magnesium transport protein CorA
BF29_1391	COG2719	SpoVR family
BF29_1392	COG3594	Acyltransferase
BF29_1398	COG1392	Phosphate transport regulator
BF29_1399	COG0306	phosphate transporter
BF29_140	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BF29_1402	COG2718	Belongs to the UPF0229 family
BF29_1403	COG2766	serine protein kinase
BF29_1404	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BF29_1407	COG2095	MarC family integral membrane protein
BF29_1409	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
BF29_141	COG0336	Belongs to the RNA methyltransferase TrmD family
BF29_1410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BF29_1411	COG0765	amino acid transport
BF29_1414	COG2116	formate transmembrane transporter activity
BF29_1417	COG1882	Formate acetyltransferase
BF29_1418	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BF29_1419	COG0431	NADPH-dependent FMN reductase
BF29_1422	COG1131	(ABC) transporter
BF29_1428	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BF29_144	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BF29_1453	COG3527	Alpha-acetolactate decarboxylase
BF29_1454	COG0028	Belongs to the TPP enzyme family
BF29_1455	COG0583	DNA-binding transcription factor activity
BF29_1456	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BF29_1458	COG0735	belongs to the Fur family
BF29_1462	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BF29_1464	COG4129	membrane
BF29_1465	COG1737	Transcriptional regulator
BF29_1466	COG1263	PTS System
BF29_1466	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BF29_1467	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BF29_147	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BF29_1470	COG1132	(ABC) transporter
BF29_1471	COG3557	Belongs to the UPF0374 family
BF29_1474	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_1475	COG0583	DNA-binding transcription factor activity
BF29_1476	COG0069	glutamate synthase activity
BF29_1476	COG0070	glutamate synthase
BF29_1476	COG0067	glutamate synthase
BF29_1478	COG0493	'glutamate synthase
BF29_148	COG0045	succinate-CoA ligase (ADP-forming) activity
BF29_1480	COG1194	a g-specific adenine glycosylase
BF29_1481	COG1988	membrane-bound metal-dependent
BF29_1484	COG2137	regulation of response to DNA damage stimulus
BF29_1487	COG0159	tryptophan synthase activity
BF29_1489	COG0133	tryptophan synthase activity
BF29_149	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BF29_1490	COG0134	indole-3-glycerol-phosphate synthase activity
BF29_1491	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BF29_1492	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BF29_1492	COG0512	Glutamine amidotransferase of anthranilate synthase
BF29_1494	COG0577	efflux transmembrane transporter activity
BF29_1494	COG1136	(ABC) transporter
BF29_1495	COG0058	SHG alpha-glucan phosphorylase activity
BF29_1497	COG0840	transmembrane signaling receptor activity
BF29_1498	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BF29_1499	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BF29_150	COG0758	DNA mediated transformation
BF29_1500	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BF29_1503	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BF29_1504	COG0066	3-isopropylmalate dehydratase activity
BF29_1505	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BF29_1507	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BF29_1508	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BF29_1509	COG0440	acetolactate synthase activity
BF29_1510	COG0028	Belongs to the TPP enzyme family
BF29_1511	COG0129	dihydroxy-acid dehydratase activity
BF29_1512	COG1114	Component of the transport system for branched-chain amino acids
BF29_1513	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_1515	COG0670	Belongs to the BI1 family
BF29_1516	COG2124	cytochrome p450
BF29_1517	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BF29_1518	COG2223	nitrite transmembrane transporter activity
BF29_1519	COG3279	Response regulator of the LytR AlgR family
BF29_1520	COG3275	phosphorelay sensor kinase activity
BF29_1521	COG0252	asparaginase activity
BF29_1522	COG2132	Multicopper oxidase
BF29_1523	COG1309	transcriptional regulator
BF29_1524	COG1511	domain protein
BF29_153	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BF29_1531	COG3739	integral membrane protein
BF29_1532	COG3655	Transcriptional regulator
BF29_1535	COG1823	symporter activity
BF29_1536	COG2839	Protein conserved in bacteria
BF29_154	COG4974	Belongs to the 'phage' integrase family
BF29_1540	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
BF29_1541	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BF29_1542	COG1279	arginine transmembrane transporter activity
BF29_1545	COG1132	(ABC) transporter
BF29_1547	COG1132	(ABC) transporter
BF29_1548	COG1846	Transcriptional regulator
BF29_1549	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BF29_155	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BF29_1550	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BF29_1554	COG0387	Pfam Sodium calcium exchanger
BF29_1555	COG0477	Major facilitator Superfamily
BF29_1556	COG1295	ribonuclease BN
BF29_1557	COG4840	Belongs to the UPF0435 family
BF29_1558	COG0024	Methionine aminopeptidase
BF29_1559	COG0693	protein deglycase activity
BF29_1561	COG1360	Flagellar Motor Protein
BF29_1562	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BF29_1564	COG3189	MarR family transcriptional regulator
BF29_1567	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BF29_1568	COG1607	acyl-coa hydrolase
BF29_1569	COG1077	Cell shape determining protein MreB Mrl
BF29_157	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BF29_1570	COG2268	Band 7 protein
BF29_1571	COG1585	Membrane protein implicated in regulation of membrane protease activity
BF29_1572	COG0626	cystathionine gamma-synthase activity
BF29_1573	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BF29_1574	COG1854	S-ribosylhomocysteine lyase activity
BF29_1575	COG2226	methyltransferase
BF29_1576	COG0288	reversible hydration of carbon dioxide
BF29_158	COG1815	bacterial-type flagellum-dependent cell motility
BF29_1580	COG2197	response regulator
BF29_1584	COG4086	secreted protein
BF29_1585	COG1737	Transcriptional regulator
BF29_1586	COG0737	Belongs to the 5'-nucleotidase family
BF29_1589	COG3620	sequence-specific DNA binding
BF29_159	COG1558	bacterial-type flagellum-dependent cell motility
BF29_1595	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BF29_1596	COG1518	maintenance of DNA repeat elements
BF29_16	COG0483	inositol monophosphate 1-phosphatase activity
BF29_160	COG1677	Flagellar hook-basal body complex protein FliE
BF29_161	COG1766	The M ring may be actively involved in energy transduction
BF29_1610	COG2801	Transposase and inactivated derivatives
BF29_1611	COG2963	transposase activity
BF29_1619	COG1304	FMN binding
BF29_162	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BF29_1620	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
BF29_1621	COG0166	Belongs to the GPI family
BF29_1622	COG0025	NhaP-type Na H and K H
BF29_1623	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BF29_1623	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BF29_1623	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BF29_1624	COG1349	DNA-binding transcription factor activity
BF29_1625	COG0371	Dehydrogenase
BF29_1626	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
BF29_1628	COG0561	phosphatase activity
BF29_163	COG1317	bacterial-type flagellum organization
BF29_1631	COG2814	Major facilitator Superfamily
BF29_1632	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BF29_1638	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BF29_1639	COG0531	amino acid
BF29_164	COG1157	protein secretion by the type III secretion system
BF29_1640	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BF29_1641	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
BF29_1642	COG1461	Dihydroxyacetone kinase
BF29_1643	COG2376	Dihydroxyacetone kinase
BF29_165	COG2882	bacterial-type flagellum organization
BF29_1657	COG0778	Nitroreductase
BF29_1658	COG1113	amino acid transport
BF29_1659	COG0730	response to heat
BF29_1660	COG2233	PERMEase
BF29_1661	COG0210	DNA helicase
BF29_1662	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BF29_1667	COG1683	Conserved Protein
BF29_1674	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BF29_1675	COG3829	transcription factor binding
BF29_1679	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
BF29_168	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BF29_1680	COG0833	amino acid
BF29_1685	COG3588	fructose-bisphosphate aldolase
BF29_1693	COG0494	nUDIX hydrolase
BF29_1694	COG1715	Restriction endonuclease
BF29_1695	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BF29_1699	COG1280	lysine exporter protein (LysE YggA)
BF29_170	COG4786	Flagellar basal body rod
BF29_1700	COG0386	Belongs to the glutathione peroxidase family
BF29_1701	COG2190	(PTS) system
BF29_1705	COG3403	YqcI/YcgG family
BF29_1707	COG0582	viral genome integration into host DNA
BF29_1709	COG2963	transposase activity
BF29_171	COG1580	Controls the rotational direction of flagella during chemotaxis
BF29_1710	COG2801	Transposase and inactivated derivatives
BF29_1714	COG1301	dicarboxylic acid transport
BF29_1717	COG1328	CTP reductase activity
BF29_1719	COG1063	alcohol dehydrogenase
BF29_172	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BF29_1720	COG1929	Belongs to the glycerate kinase type-1 family
BF29_1722	COG2801	Transposase and inactivated derivatives
BF29_1723	COG2963	transposase activity
BF29_1726	COG4549	nuclear export factor GLE1
BF29_1727	COG1276	copper resistance
BF29_1727	COG2372	response to copper ion
BF29_173	COG1776	CheC inhibitor of MCP methylation
BF29_173	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BF29_1734	COG5002	protein histidine kinase activity
BF29_1735	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BF29_1736	COG1278	Cold shock
BF29_1739	COG1472	Belongs to the glycosyl hydrolase 3 family
BF29_174	COG2201	protein-glutamate methylesterase activity
BF29_1741	COG3876	Protein conserved in bacteria
BF29_1742	COG1132	(ABC) transporter
BF29_1743	COG1132	(ABC) transporter
BF29_1745	COG0791	NLP P60 protein
BF29_1745	COG1388	LysM domain
BF29_175	COG3190	flagellar
BF29_1752	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BF29_1752	COG3153	acetyltransferase
BF29_1753	COG5583	Uncharacterized small protein (DUF2292)
BF29_1754	COG0431	NADPH-dependent FMN reductase
BF29_1756	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BF29_1757	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BF29_1758	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BF29_176	COG1338	Plays a role in the flagellum-specific transport system
BF29_1760	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BF29_1762	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BF29_1763	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BF29_1765	COG2390	Transcriptional regulator
BF29_1767	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BF29_1769	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
BF29_177	COG1987	bacterial-type flagellum assembly
BF29_1772	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BF29_1773	COG1984	allophanate hydrolase subunit 2
BF29_1774	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BF29_1775	COG2814	Major facilitator Superfamily
BF29_1776	COG1764	response to oxidative stress
BF29_1777	COG1126	abc transporter atp-binding protein
BF29_1778	COG0765	amino acid transport
BF29_1779	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BF29_178	COG1684	flagellar biosynthetic protein fliR
BF29_1780	COG1473	amidohydrolase
BF29_1781	COG0326	Molecular chaperone. Has ATPase activity
BF29_1786	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BF29_1788	COG1064	alcohol dehydrogenase
BF29_179	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BF29_18	COG1217	gtp-binding protein TYPA
BF29_180	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BF29_1804	COG1401	restriction endodeoxyribonuclease activity
BF29_181	COG1419	protein localization to endoplasmic reticulum
BF29_182	COG0455	bacterial-type flagellum organization
BF29_1826	COG2963	transposase activity
BF29_183	COG2201	protein-glutamate methylesterase activity
BF29_1833	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BF29_1834	COG1597	lipid kinase activity
BF29_1838	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BF29_1839	COG0154	amidase activity
BF29_184	COG2198	Histidine kinase
BF29_184	COG0643	Histidine kinase
BF29_1840	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BF29_1841	COG2224	Isocitrate lyase
BF29_1842	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BF29_1843	COG4851	CamS sex pheromone cAM373 precursor
BF29_1845	COG0210	DNA helicase
BF29_1846	COG3344	reverse transcriptase
BF29_1847	COG0210	DNA helicase
BF29_1848	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
BF29_1849	COG4496	protein, YerC YecD
BF29_185	COG0835	chemotaxis
BF29_1850	COG1470	cell adhesion involved in biofilm formation
BF29_1853	COG0151	Belongs to the GarS family
BF29_1855	COG0138	bifunctional purine biosynthesis protein purh
BF29_1856	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BF29_1857	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BF29_1858	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BF29_1859	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BF29_186	COG1776	CheC inhibitor of MCP methylation
BF29_1860	COG0047	phosphoribosylformylglycinamidine synthase activity
BF29_1861	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BF29_1863	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BF29_1864	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BF29_1865	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BF29_1867	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
BF29_1868	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BF29_187	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BF29_1876	COG2963	transposase activity
BF29_1877	COG2801	Transposase and inactivated derivatives
BF29_188	COG1191	sigma factor activity
BF29_1880	COG1301	dicarboxylic acid transport
BF29_1882	COG3711	transcriptional antiterminator
BF29_1883	COG2252	PERMEase
BF29_1885	COG1132	(ABC) transporter
BF29_1886	COG2814	Major facilitator Superfamily
BF29_1890	COG0471	metal ion transport
BF29_1899	COG3328	transposase activity
BF29_190	COG0052	Belongs to the universal ribosomal protein uS2 family
BF29_1901	COG1131	(ABC) transporter
BF29_1902	COG1725	Transcriptional regulator
BF29_1903	COG1695	Transcriptional regulator
BF29_1904	COG3479	Phenolic acid decarboxylase
BF29_1905	COG2910	NAD(P)H-binding
BF29_1906	COG1959	2 iron, 2 sulfur cluster binding
BF29_1908	COG0535	radical SAM domain protein
BF29_1909	COG1994	Peptidase M50
BF29_191	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BF29_1910	COG1131	(ABC) transporter
BF29_1914	COG4372	Transposase
BF29_1915	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BF29_1916	COG0425	Belongs to the sulfur carrier protein TusA family
BF29_1917	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BF29_1918	COG1279	arginine transmembrane transporter activity
BF29_192	COG0528	UMP kinase activity
BF29_1922	COG0425	Belongs to the sulfur carrier protein TusA family
BF29_1923	COG2391	methyltransferase activity
BF29_1925	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_1929	COG1120	ATPase activity
BF29_193	COG0233	cytoplasmic translational termination
BF29_1930	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BF29_194	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BF29_1940	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BF29_1940	COG0519	Catalyzes the synthesis of GMP from XMP
BF29_1942	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BF29_1943	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BF29_1944	COG1335	isochorismatase
BF29_1945	COG4948	Mandelate Racemase Muconate Lactonizing
BF29_1947	COG0463	Glycosyl transferase, family 2
BF29_1948	COG2246	polysaccharide biosynthetic process
BF29_1949	COG0459	protein refolding
BF29_195	COG4589	Belongs to the CDS family
BF29_1950	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BF29_1951	COG1266	CAAX protease self-immunity
BF29_1954	COG0805	protein transport
BF29_1955	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
BF29_1957	COG0488	(ABC) transporter
BF29_1958	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BF29_1959	COG0456	acetyltransferase
BF29_196	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BF29_1960	COG1214	PFAM Peptidase M22, glycoprotease
BF29_1961	COG0802	atpase or kinase
BF29_197	COG0750	zinc metalloprotease
BF29_198	COG0442	prolyl-tRNA aminoacylation
BF29_1982	COG3091	SprT-like family
BF29_1983	COG2183	response to ionizing radiation
BF29_1984	COG2208	phosphoserine phosphatase activity
BF29_1985	COG1191	sigma factor activity
BF29_1986	COG2172	sigma factor antagonist activity
BF29_1987	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_1988	COG2208	phosphoserine phosphatase activity
BF29_1989	COG2172	sigma factor antagonist activity
BF29_199	COG2176	DNA-directed DNA polymerase activity
BF29_1990	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_1991	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_1992	COG2337	Toxic component of a toxin-antitoxin (TA) module
BF29_1993	COG0864	Transcriptional regulator
BF29_1994	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BF29_1995	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BF29_1996	COG0736	holo-[acyl-carrier-protein] synthase activity
BF29_1997	COG0705	Rhomboid family
BF29_2	COG1473	amidohydrolase
BF29_20	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BF29_200	COG0779	Required for maturation of 30S ribosomal subunits
BF29_2000	COG0513	Belongs to the DEAD box helicase family
BF29_2001	COG1280	lysine exporter protein (LysE YggA)
BF29_2002	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BF29_2003	COG1609	Transcriptional regulator
BF29_2004	COG0366	Alpha amylase catalytic
BF29_2006	COG2182	Extracellular solute-binding protein
BF29_2007	COG1175	transmembrane transport
BF29_2008	COG3833	ABC-type maltose transport systems, permease component
BF29_2009	COG5521	maltodextrose utilization protein MalA
BF29_201	COG0195	Participates in both transcription termination and antitermination
BF29_2010	COG1554	hydrolase, family 65, central catalytic
BF29_2012	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BF29_2013	COG1181	Belongs to the D-alanine--D-alanine ligase family
BF29_2017	COG1253	flavin adenine dinucleotide binding
BF29_2018	COG0789	Transcriptional regulator
BF29_2019	COG1253	flavin adenine dinucleotide binding
BF29_202	COG2740	Nucleic-acid-binding protein implicated in transcription termination
BF29_2023	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BF29_2026	COG0629	single-stranded DNA binding
BF29_2028	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BF29_2029	COG4786	Flagellar basal body rod
BF29_203	COG1358	cellular component organization or biogenesis
BF29_2030	COG4786	Flagellar basal body rod
BF29_2031	COG1077	Cell shape determining protein MreB Mrl
BF29_2032	COG1609	Transcriptional regulator
BF29_2033	COG0739	heme binding
BF29_2034	COG2385	sporulation resulting in formation of a cellular spore
BF29_2035	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BF29_2038	COG4836	Membrane
BF29_2039	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BF29_2040	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BF29_2041	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BF29_2042	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BF29_2043	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BF29_2045	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BF29_2046	COG0356	it plays a direct role in the translocation of protons across the membrane
BF29_2048	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BF29_2049	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BF29_205	COG1550	Protein conserved in bacteria
BF29_2051	COG4475	Protein of unknown function (DUF436)
BF29_2052	COG0698	ribose 5-phosphate isomerase
BF29_2053	COG0840	transmembrane signaling receptor activity
BF29_206	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BF29_2065	COG1971	Probably functions as a manganese efflux pump
BF29_2066	COG0009	L-threonylcarbamoyladenylate synthase
BF29_2069	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BF29_207	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BF29_2071	COG1435	thymidine kinase activity
BF29_2072	COG0254	rRNA binding
BF29_2073	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BF29_2075	COG1494	fructose-1,6-bisphosphatase
BF29_2076	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BF29_2077	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BF29_2078	COG0191	fructose-bisphosphate aldolase activity
BF29_2079	COG2204	response regulator
BF29_208	COG0196	riboflavin kinase activity
BF29_2083	COG2963	transposase activity
BF29_2084	COG2801	Transposase and inactivated derivatives
BF29_2085	COG1131	(ABC) transporter
BF29_2086	COG1725	Transcriptional regulator
BF29_2087	COG0504	CTP synthase activity
BF29_2088	COG3343	RNA polymerase activity
BF29_209	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BF29_2092	COG1309	transcriptional regulator
BF29_2093	COG1960	acyl-CoA dehydrogenase activity
BF29_2094	COG1960	acyl-CoA dehydrogenase activity
BF29_2095	COG0183	Belongs to the thiolase family
BF29_2096	COG0247	lactate metabolic process
BF29_2096	COG2181	nitrate reductase activity
BF29_2097	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BF29_2098	COG0018	arginyl-trna synthetase
BF29_21	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BF29_210	COG1185	polyribonucleotide nucleotidyltransferase activity
BF29_2100	COG0010	Belongs to the arginase family
BF29_2101	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BF29_2103	COG1994	Peptidase M50
BF29_2105	COG3465	dGTPase activity
BF29_2106	COG1078	dGTPase activity
BF29_2108	COG0095	Lipoate-protein ligase
BF29_211	COG0726	polysaccharide deacetylase
BF29_2110	COG0280	phosphate acetyltransferase
BF29_2111	COG3253	May function as heme-dependent peroxidase
BF29_2114	COG2963	transposase activity
BF29_2115	COG2801	Transposase and inactivated derivatives
BF29_2117	COG2363	Small membrane protein
BF29_2119	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BF29_212	COG0612	Peptidase, M16
BF29_2124	COG3949	Membrane
BF29_2125	COG4948	Mandelate Racemase Muconate Lactonizing
BF29_2127	COG1473	amidohydrolase
BF29_2129	COG0351	phosphomethylpyrimidine kinase
BF29_213	COG1873	PFAM PRC-barrel domain
BF29_2132	COG0561	phosphatase activity
BF29_2133	COG0514	ATP-dependent DNA helicase (RecQ)
BF29_2134	COG1785	Belongs to the alkaline phosphatase family
BF29_2135	COG1737	Transcriptional regulator
BF29_2138	COG5002	protein histidine kinase activity
BF29_2138	COG3850	Histidine kinase
BF29_214	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BF29_2142	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BF29_2144	COG1346	cytolysis
BF29_2145	COG1380	Effector of murein hydrolase LrgA
BF29_2146	COG0583	DNA-binding transcription factor activity
BF29_2147	COG0367	asparagine synthase
BF29_2149	COG2801	Transposase and inactivated derivatives
BF29_215	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BF29_2150	COG2963	transposase activity
BF29_216	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BF29_2163	COG2966	Psort location CytoplasmicMembrane, score
BF29_2164	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BF29_2165	COG1966	Carbon starvation protein
BF29_2166	COG1464	Belongs to the NlpA lipoprotein family
BF29_2167	COG2011	ABC-type metal ion transport system permease component
BF29_2168	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BF29_2169	COG1119	ATPase activity
BF29_217	COG0527	aspartate kinase activity
BF29_2172	COG0534	Mate efflux family protein
BF29_2173	COG1442	glycosyl transferase family 8
BF29_2175	COG2195	Cleaves the N-terminal amino acid of tripeptides
BF29_2177	COG2814	Major facilitator Superfamily
BF29_2180	COG0028	Belongs to the TPP enzyme family
BF29_2185	COG3842	ATPase activity
BF29_219	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BF29_2190	COG0584	glycerophosphoryl diester phosphodiesterase
BF29_2195	COG1132	(ABC) transporter
BF29_2197	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BF29_22	COG4838	Belongs to the UPF0358 family
BF29_2202	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_2209	COG1126	abc transporter atp-binding protein
BF29_221	COG0740	serine-type endopeptidase activity
BF29_2211	COG0765	amino acid transport
BF29_2216	COG0579	oxidoreductase
BF29_223	COG1674	ftsk spoiiie
BF29_223	COG4980	gas vesicle protein
BF29_2234	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BF29_2235	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BF29_2236	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BF29_2237	COG4853	Protein conserved in bacteria
BF29_2238	COG4863	YycH protein
BF29_2239	COG5002	protein histidine kinase activity
BF29_224	COG1744	ABC transporter substrate-binding protein PnrA-like
BF29_2240	COG0745	RESPONSE REGULATOR receiver
BF29_2244	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BF29_2245	COG0305	Participates in initiation and elongation during chromosome replication
BF29_2246	COG0359	binds to the 23S rRNA
BF29_2247	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
BF29_2249	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BF29_225	COG3845	ABC transporter
BF29_2251	COG0360	Binds together with S18 to 16S ribosomal RNA
BF29_2252	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BF29_2253	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BF29_2253	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BF29_2254	COG0307	riboflavin synthase, alpha
BF29_2255	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BF29_2255	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BF29_2256	COG0012	GTP binding
BF29_2257	COG4481	Protein conserved in bacteria
BF29_2258	COG0668	transmembrane transport
BF29_226	COG4603	Belongs to the binding-protein-dependent transport system permease family
BF29_2260	COG1811	Na channel or pump
BF29_2261	COG1475	DNA binding
BF29_2262	COG1192	Involved in chromosome partitioning
BF29_2264	COG1475	DNA binding
BF29_2265	COG0357	Ribosomal RNA small subunit methyltransferase G
BF29_2266	COG0445	tRNA wobble uridine modification
BF29_2267	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BF29_2268	COG1847	R3H domain protein
BF29_2269	COG0706	membrane insertase activity
BF29_227	COG1079	Belongs to the binding-protein-dependent transport system permease family
BF29_2270	COG0594	ribonuclease P activity
BF29_2271	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BF29_2272	COG0592	DNA-directed DNA polymerase activity
BF29_2275	COG2501	S4 domain
BF29_2276	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BF29_2278	COG0187	DNA topoisomerase II activity
BF29_2279	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BF29_228	COG0612	Peptidase, M16
BF29_2280	COG3437	response regulator, receiver
BF29_2289	COG1982	Orn Lys Arg decarboxylase major
BF29_229	COG0612	Peptidase, M16
BF29_2291	COG3870	Protein conserved in bacteria
BF29_2292	COG1728	Protein conserved in bacteria
BF29_2293	COG0470	DNA polymerase III
BF29_2294	COG1774	PSP1 C-terminal conserved region
BF29_2295	COG4467	Involved in initiation control of chromosome replication
BF29_2296	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BF29_2297	COG2827	Endonuclease containing a URI domain
BF29_2298	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BF29_2299	COG2002	toxin-antitoxin pair type II binding
BF29_23	COG0772	Belongs to the SEDS family
BF29_230	COG0300	oxidoreductase activity
BF29_2301	COG0084	hydrolase, TatD family'
BF29_2305	COG4466	Protein conserved in bacteria
BF29_2307	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BF29_2308	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BF29_2309	COG0251	oxidation-reduction process
BF29_2312	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BF29_2313	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BF29_2314	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BF29_2317	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BF29_2318	COG2002	toxin-antitoxin pair type II binding
BF29_2319	COG2244	polysaccharide biosynthetic process
BF29_2320	COG3956	TIGRFAM MazG family protein
BF29_2321	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BF29_2325	COG1098	S1 RNA binding domain
BF29_2327	COG2208	phosphoserine phosphatase activity
BF29_2328	COG2304	oxidoreductase activity
BF29_2329	COG0515	serine threonine protein kinase
BF29_233	COG1426	Protein conserved in bacteria
BF29_2330	COG0037	tRNA processing
BF29_2331	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
BF29_2332	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BF29_2333	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BF29_2334	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BF29_2335	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BF29_2336	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BF29_2337	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BF29_2338	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BF29_234	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BF29_235	COG1058	Belongs to the CinA family
BF29_235	COG1546	Belongs to the CinA family
BF29_2360	COG0516	GMP reductase activity
BF29_2360	COG0517	IMP dehydrogenase activity
BF29_2363	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
BF29_2364	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BF29_2367	COG1428	Deoxynucleoside kinase
BF29_2368	COG1428	Deoxynucleoside kinase
BF29_2369	COG1388	LysM domain
BF29_2369	COG3858	chitin binding
BF29_237	COG1418	mRNA catabolic process
BF29_2371	COG0590	tRNA wobble adenosine to inosine editing
BF29_2372	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BF29_2373	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BF29_2374	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BF29_238	COG1692	metallophosphoesterase
BF29_2385	COG3880	PFAM UvrB UvrC protein
BF29_2386	COG3869	Catalyzes the specific phosphorylation of arginine residues in
BF29_2387	COG0542	response to heat
BF29_2388	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BF29_2389	COG4956	integral membrane protein (PIN domain superfamily)
BF29_239	COG2359	stage V sporulation protein S
BF29_2391	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BF29_2392	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BF29_2393	COG1045	serine acetyltransferase
BF29_2394	COG0215	cysteine-tRNA ligase activity
BF29_2396	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BF29_2397	COG3688	RNA-binding protein containing a PIN domain
BF29_24	COG1612	heme a metabolic process
BF29_240	COG0826	peptidase U32
BF29_2400	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BF29_2401	COG0250	Participates in transcription elongation, termination and antitermination
BF29_2402	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BF29_2404	COG0081	regulation of translation
BF29_2405	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BF29_2407	COG2813	Specifically methylates the guanine in position
BF29_2408	COG0085	RNA polymerase activity
BF29_241	COG0826	peptidase U32
BF29_2410	COG1358	cellular component organization or biogenesis
BF29_2411	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BF29_2412	COG0049	tRNA binding
BF29_2413	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BF29_2414	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BF29_2415	COG0051	transcription antitermination factor activity, RNA binding
BF29_2419	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BF29_242	COG0531	amino acid
BF29_2420	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BF29_2422	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BF29_2423	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BF29_2424	COG0255	Belongs to the universal ribosomal protein uL29 family
BF29_2426	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BF29_2428	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BF29_2429	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BF29_243	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BF29_2430	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BF29_2431	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BF29_2432	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BF29_2433	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BF29_2435	COG0200	Binds to the 23S rRNA
BF29_2436	COG0201	protein transport
BF29_2437	COG0563	adenylate kinase activity
BF29_2438	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BF29_2439	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BF29_244	COG4550	Control of competence regulator ComK, YlbF/YmcA
BF29_2440	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BF29_2441	COG0202	RNA polymerase activity
BF29_2442	COG0203	ribosomal protein L17
BF29_2443	COG1122	ATPase activity
BF29_2444	COG1122	ATPase activity
BF29_2445	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BF29_2447	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BF29_2448	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BF29_2451	COG2046	Belongs to the sulfate adenylyltransferase family
BF29_2452	COG0529	Catalyzes the synthesis of activated sulfate
BF29_2453	COG0833	amino acid
BF29_2455	COG0860	N-Acetylmuramoyl-L-alanine amidase
BF29_2456	COG0489	protein tyrosine kinase activity
BF29_2459	COG2194	sulfuric ester hydrolase activity
BF29_246	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BF29_2462	COG0662	Cupin 2, conserved barrel domain protein
BF29_2467	COG0726	polysaccharide deacetylase
BF29_2469	COG1271	oxidase subunit
BF29_247	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BF29_2470	COG1294	oxidase, subunit
BF29_2471	COG4988	ABC transporter
BF29_2472	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BF29_2488	COG1525	nuclease
BF29_2493	COG3617	BRO family, N-terminal domain
BF29_25	COG0109	protoheme IX farnesyltransferase activity
BF29_2501	COG5377	YqaJ viral recombinase family
BF29_2502	COG3723	Recombinational DNA repair protein, rece pathway
BF29_252	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BF29_2522	COG0175	sulfate reduction
BF29_2523	COG2963	transposase activity
BF29_2524	COG2801	Transposase and inactivated derivatives
BF29_2525	COG3677	Transposase
BF29_2527	COG5484	DNA packaging
BF29_254	COG0464	growth
BF29_255	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BF29_256	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
BF29_2562	COG0658	competence protein
BF29_2562	COG2333	competence protein COMEC
BF29_2564	COG1525	nuclease
BF29_2569	COG3617	BRO family, N-terminal domain
BF29_257	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BF29_2577	COG5377	YqaJ viral recombinase family
BF29_2578	COG3723	Recombinational DNA repair protein, rece pathway
BF29_2599	COG0175	sulfate reduction
BF29_26	COG2010	Cytochrome c
BF29_26	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BF29_2600	COG2963	transposase activity
BF29_2601	COG2801	Transposase and inactivated derivatives
BF29_2602	COG3677	Transposase
BF29_2604	COG5484	DNA packaging
BF29_261	COG1321	iron dependent repressor
BF29_262	COG2759	Belongs to the formate--tetrahydrofolate ligase family
BF29_2638	COG0658	competence protein
BF29_2638	COG2333	competence protein COMEC
BF29_264	COG0488	(ABC) transporter
BF29_2641	COG1595	DNA-templated transcription, initiation
BF29_2643	COG1595	DNA-templated transcription, initiation
BF29_2644	COG5662	AntiSigma factor
BF29_2645	COG2801	Transposase and inactivated derivatives
BF29_2646	COG2963	transposase activity
BF29_2648	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BF29_2649	COG4856	YbbR-like protein
BF29_265	COG1413	lyase activity
BF29_2650	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BF29_2652	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BF29_2655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BF29_2665	COG3425	synthase
BF29_2666	COG0183	Belongs to the thiolase family
BF29_2670	COG0517	IMP dehydrogenase activity
BF29_2670	COG1125	glycine betaine transport
BF29_2671	COG1174	glycine betaine transport
BF29_2672	COG2190	(PTS) system
BF29_2673	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BF29_2673	COG1263	PTS System
BF29_2674	COG0366	Alpha amylase catalytic
BF29_2675	COG2188	Transcriptional regulator
BF29_2677	COG1070	Carbohydrate kinase
BF29_2679	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BF29_268	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BF29_2680	COG0716	FMN binding
BF29_2681	COG0322	excinuclease ABC activity
BF29_2682	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BF29_2683	COG2217	Heavy metal translocating P-type atpase
BF29_2684	COG2217	Heavy metal translocating P-type atpase
BF29_2687	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BF29_2689	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BF29_269	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BF29_2690	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
BF29_2691	COG1215	transferase activity, transferring glycosyl groups
BF29_2694	COG2076	Multidrug Resistance protein
BF29_2695	COG2076	Multidrug Resistance protein
BF29_2697	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BF29_2698	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BF29_2699	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BF29_270	COG1272	protein, Hemolysin III
BF29_2700	COG1120	ATPase activity
BF29_2704	COG0217	transcriptional regulatory protein
BF29_2705	COG1366	Belongs to the anti-sigma-factor antagonist family
BF29_2706	COG1960	acyl-CoA dehydrogenase activity
BF29_2707	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_271	COG2755	lipolytic protein G-D-S-L family
BF29_2711	COG1309	transcriptional regulator
BF29_2726	COG3226	Transcriptional regulator
BF29_2729	COG1012	belongs to the aldehyde dehydrogenase family
BF29_273	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BF29_273	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
BF29_2733	COG5434	Belongs to the glycosyl hydrolase 28 family
BF29_2735	COG0175	sulfate reduction
BF29_2739	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BF29_274	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BF29_2740	COG0371	Dehydrogenase
BF29_2743	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_2746	COG0697	spore germination
BF29_275	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BF29_2752	COG1442	glycosyl transferase family 8
BF29_2752	COG1216	Glycosyl transferase, family 2
BF29_2753	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BF29_2756	COG0702	epimerase
BF29_2759	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BF29_2763	COG2848	UPF0210 protein
BF29_2767	COG1609	Transcriptional regulator
BF29_2768	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BF29_2769	COG5577	PFAM Coat F domain
BF29_277	COG0840	transmembrane signaling receptor activity
BF29_2770	COG0667	Aldo Keto reductase
BF29_2772	COG1113	amino acid transport
BF29_2776	COG3104	oligopeptide transport
BF29_2777	COG0833	amino acid
BF29_278	COG4479	Belongs to the UPF0346 family
BF29_2780	COG3842	ATPase activity
BF29_2781	COG1176	ABC-type spermidine putrescine transport system, permease component I
BF29_2782	COG1177	transmembrane transport
BF29_2785	COG0531	amino acid
BF29_2786	COG1556	Lactate utilization protein
BF29_2787	COG1139	Iron-sulfur cluster binding protein
BF29_2788	COG0247	lactate metabolic process
BF29_2789	COG0531	amino acid
BF29_2790	COG1979	alcohol dehydrogenase
BF29_2791	COG0004	ammonium transporteR
BF29_2792	COG3290	protein histidine kinase activity
BF29_2793	COG4565	transcriptional regulatory protein
BF29_2794	COG2851	Citrate transporter
BF29_2795	COG0463	Glycosyl transferase, family 2
BF29_2796	COG3973	AAA domain
BF29_2804	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
BF29_2805	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BF29_2806	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BF29_2807	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BF29_2808	COG1301	dicarboxylic acid transport
BF29_2809	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BF29_281	COG1876	peptidase activity
BF29_2810	COG2963	transposase activity
BF29_2811	COG2801	Transposase and inactivated derivatives
BF29_2815	COG1902	pentaerythritol trinitrate reductase activity
BF29_2819	COG0423	glycine-tRNA ligase activity
BF29_282	COG0793	Belongs to the peptidase S41A family
BF29_282	COG3409	Peptidoglycan-binding domain 1 protein
BF29_2821	COG0531	amino acid
BF29_2823	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BF29_2824	COG0628	permease
BF29_2827	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BF29_2828	COG0765	amino acid transport
BF29_2829	COG0765	amino acid transport
BF29_283	COG1846	Transcriptional regulator
BF29_2832	COG1733	regulation of RNA biosynthetic process
BF29_2833	COG0586	Pfam SNARE associated Golgi protein
BF29_2834	COG0586	Pfam SNARE associated Golgi protein
BF29_2838	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BF29_2838	COG0646	methionine synthase
BF29_2839	COG1410	methionine synthase
BF29_2839	COG0646	methionine synthase
BF29_2846	COG3944	biosynthesis protein
BF29_2847	COG0489	protein tyrosine kinase activity
BF29_2848	COG4464	protein tyrosine phosphatase activity
BF29_2849	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BF29_285	COG2340	Cysteine-rich secretory protein family
BF29_2850	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BF29_2853	COG1442	glycosyl transferase family 8
BF29_2853	COG1216	Glycosyl transferase, family 2
BF29_2854	COG1216	Glycosyl transferase, family 2
BF29_2854	COG1442	glycosyl transferase family 8
BF29_286	COG0534	Mate efflux family protein
BF29_2870	COG1070	Carbohydrate kinase
BF29_2872	COG1063	alcohol dehydrogenase
BF29_2873	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BF29_2876	COG4193	domain, Protein
BF29_2879	COG5504	Zn-dependent protease
BF29_2884	COG5263	repeat protein
BF29_2884	COG0366	Alpha amylase catalytic
BF29_289	COG1793	dna ligase
BF29_289	COG3285	dna ligase
BF29_2890	COG2315	Protein conserved in bacteria
BF29_2892	COG2333	competence protein COMEC
BF29_2892	COG0658	competence protein
BF29_29	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BF29_290	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
BF29_2904	COG0531	amino acid
BF29_2906	COG1316	TRANSCRIPTIONal
BF29_2909	COG4989	oxidoreductase activity
BF29_291	COG0671	phosphoesterase, PA-phosphatase related
BF29_2912	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BF29_2913	COG2130	NADP-dependent
BF29_2919	COG2190	(PTS) system
BF29_2919	COG2211	Major facilitator Superfamily
BF29_2922	COG2814	Major facilitator Superfamily
BF29_2929	COG2814	Major facilitator Superfamily
BF29_293	COG1368	sulfuric ester hydrolase activity
BF29_2930	COG1609	Transcriptional regulator
BF29_2934	COG1174	glycine betaine transport
BF29_2935	COG1732	Glycine betaine
BF29_2936	COG1174	glycine betaine transport
BF29_2937	COG0517	IMP dehydrogenase activity
BF29_2937	COG1125	glycine betaine transport
BF29_2938	COG1510	regulation of RNA biosynthetic process
BF29_2939	COG0110	maltose O-acetyltransferase activity
BF29_294	COG1331	Highly conserved protein containing a thioredoxin domain
BF29_2943	COG4297	protein containing double-stranded beta helix domain
BF29_2945	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BF29_2946	COG2272	Belongs to the type-B carboxylesterase lipase family
BF29_2947	COG0606	chelatase, subunit chli
BF29_295	COG2814	Major facilitator Superfamily
BF29_2950	COG0371	Dehydrogenase
BF29_2952	COG0157	Belongs to the NadC ModD family
BF29_2953	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BF29_2954	COG1104	cysteine desulfurase activity
BF29_2958	COG1131	(ABC) transporter
BF29_2965	COG4720	Psort location CytoplasmicMembrane, score
BF29_297	COG0745	RESPONSE REGULATOR receiver
BF29_2971	COG0584	glycerophosphoryl diester phosphodiesterase
BF29_298	COG5002	protein histidine kinase activity
BF29_2981	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BF29_2982	COG0737	Belongs to the 5'-nucleotidase family
BF29_2983	COG1363	Peptidase, m42
BF29_2987	COG1620	l-lactate permease
BF29_2988	COG2186	Transcriptional regulator
BF29_30	COG3336	cytochrome c oxidase
BF29_3000	COG1447	Phosphotransferase system cellobiose-specific component IIA
BF29_3004	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BF29_3004	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BF29_3005	COG2723	6-phospho-beta-galactosidase activity
BF29_3007	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BF29_3007	COG3711	transcriptional antiterminator
BF29_3008	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BF29_301	COG0567	Dehydrogenase, E1 component
BF29_3010	COG0626	cystathionine gamma-synthase activity
BF29_3011	COG0626	cystathionine gamma-synthase activity
BF29_3015	COG1653	transport
BF29_3016	COG2207	Transcriptional regulator
BF29_3019	COG0604	alcohol dehydrogenase
BF29_302	COG0508	dehydrogenase complex catalyzes the overall conversion of
BF29_3020	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BF29_3021	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BF29_3026	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BF29_3028	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BF29_303	COG1012	belongs to the aldehyde dehydrogenase family
BF29_3030	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BF29_3031	COG1316	TRANSCRIPTIONal
BF29_3032	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BF29_3033	COG1554	hydrolase, family 65, central catalytic
BF29_3035	COG1609	Transcriptional regulator
BF29_3036	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BF29_3039	COG1388	LysM domain
BF29_3039	COG3584	3D domain protein
BF29_3040	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BF29_3043	COG0011	TIGRFAM Protein of
BF29_3044	COG2706	6-phosphogluconolactonase activity
BF29_3046	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BF29_3046	COG3933	PFAM sigma-54 factor interaction domain-containing protein
BF29_3047	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BF29_3047	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BF29_3049	COG3715	PTS system
BF29_3050	COG3716	PTS system mannose fructose sorbose family IID component
BF29_3053	COG2079	MmgE PrpD family protein
BF29_3054	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BF29_3056	COG0154	amidase activity
BF29_3058	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BF29_3059	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BF29_3060	COG1116	anion transmembrane transporter activity
BF29_3061	COG0083	homoserine kinase activity
BF29_3062	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BF29_3063	COG0460	homoserine dehydrogenase
BF29_3064	COG0010	Belongs to the arginase family
BF29_3066	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BF29_3067	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BF29_3069	COG4145	pantothenate transmembrane transporter activity
BF29_307	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF29_3073	COG1454	alcohol dehydrogenase
BF29_3073	COG1012	belongs to the aldehyde dehydrogenase family
BF29_3076	COG0791	NLP P60 protein
BF29_3076	COG1388	LysM domain
BF29_3077	COG0024	Methionine aminopeptidase
BF29_3078	COG1268	BioY protein
BF29_3083	COG2323	membrane
BF29_3085	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BF29_3087	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_3088	COG2746	aminoglycoside 3-N-acetyltransferase activity
BF29_3089	COG2244	polysaccharide biosynthetic process
BF29_309	COG1054	Belongs to the UPF0176 family
BF29_3090	COG0589	response to stress
BF29_3093	COG0535	radical SAM domain protein
BF29_3095	COG0561	phosphatase activity
BF29_310	COG2135	peptidase activity
BF29_3100	COG0431	NADPH-dependent FMN reductase
BF29_3103	COG0420	3'-5' exonuclease activity
BF29_3104	COG4717	serine-type aminopeptidase activity
BF29_3106	COG1250	3-hydroxyacyl-CoA dehydrogenase
BF29_3107	COG0534	Mate efflux family protein
BF29_3110	COG0789	Transcriptional regulator
BF29_3111	COG0436	Aminotransferase
BF29_3112	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BF29_3114	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BF29_312	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BF29_3124	COG0798	PFAM Bile acid sodium symporter
BF29_3126	COG2226	methyltransferase
BF29_3128	COG1090	epimerase
BF29_3129	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BF29_313	COG0516	GMP reductase activity
BF29_313	COG0517	IMP dehydrogenase activity
BF29_3132	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BF29_3135	COG1960	acyl-CoA dehydrogenase activity
BF29_3138	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BF29_3139	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BF29_314	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BF29_314	COG0723	plastoquinol--plastocyanin reductase activity
BF29_3140	COG2017	converts alpha-aldose to the beta-anomer
BF29_3141	COG1609	Transcriptional regulator
BF29_3147	COG2996	Protein conserved in bacteria
BF29_3148	COG0346	lactoylglutathione lyase activity
BF29_3149	COG1482	cell wall glycoprotein biosynthetic process
BF29_315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BF29_315	COG0723	plastoquinol--plastocyanin reductase activity
BF29_3151	COG0477	Major facilitator Superfamily
BF29_3153	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BF29_3155	COG2188	Transcriptional regulator
BF29_3156	COG1388	LysM domain
BF29_3156	COG0791	NLP P60 protein
BF29_3158	COG0768	penicillin binding
BF29_3159	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BF29_316	COG3584	3D domain protein
BF29_316	COG1388	LysM domain
BF29_3160	COG1739	Uncharacterized protein family UPF0029
BF29_3162	COG2197	response regulator
BF29_3163	COG0531	amino acid
BF29_3164	COG1307	EDD domain protein, DegV family
BF29_3165	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
BF29_3166	COG1040	competence protein
BF29_3168	COG2747	anti-sigma28 factor FlgM
BF29_317	COG1113	amino acid transport
BF29_3170	COG1256	bacterial-type flagellum assembly
BF29_3170	COG4786	Flagellar basal body rod
BF29_3171	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BF29_3173	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BF29_3175	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
BF29_3176	COG1285	pathogenesis
BF29_3177	COG0647	UMP catabolic process
BF29_3179	COG2271	Major facilitator Superfamily
BF29_318	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BF29_3181	COG1113	amino acid transport
BF29_3182	COG1067	ATP-dependent peptidase activity
BF29_319	COG0598	Magnesium transport protein CorA
BF29_3193	COG2094	Belongs to the DNA glycosylase MPG family
BF29_3195	COG1334	flagellar protein FlaG
BF29_3196	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BF29_3197	COG1516	flagellar protein fliS
BF29_32	COG2340	Cysteine-rich secretory protein family
BF29_3200	COG0405	Gamma-glutamyltransferase
BF29_3204	COG0653	protein targeting
BF29_3205	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BF29_3206	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF29_3208	COG2884	Cell division ATP-binding protein ftsE
BF29_3209	COG2177	Part of the ABC transporter FtsEX involved in
BF29_321	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
BF29_3210	COG0739	heme binding
BF29_3213	COG0460	homoserine dehydrogenase
BF29_3214	COG0793	Belongs to the peptidase S41A family
BF29_3214	COG3409	Peptidoglycan-binding domain 1 protein
BF29_3215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BF29_3216	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BF29_3217	COG4605	iron ion homeostasis
BF29_3218	COG4604	ABC transporter, ATP-binding protein
BF29_3219	COG4607	ABC-type enterochelin transport system periplasmic component
BF29_322	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BF29_3223	COG0745	RESPONSE REGULATOR receiver
BF29_3225	COG5002	protein histidine kinase activity
BF29_3226	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
BF29_3228	COG0573	inorganic phosphate transmembrane transporter activity
BF29_3229	COG0581	inorganic phosphate transmembrane transporter activity
BF29_3230	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BF29_3231	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BF29_3236	COG0556	nucleotide-excision repair
BF29_3237	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BF29_3238	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BF29_324	COG0131	Imidazoleglycerol-phosphate dehydratase
BF29_3240	COG0463	Glycosyl transferase, family 2
BF29_325	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BF29_3250	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BF29_3251	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BF29_3252	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BF29_3253	COG1682	transport, permease protein
BF29_3255	COG3595	metallopeptidase activity
BF29_3257	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BF29_3259	COG0546	phosphoglycolate phosphatase activity
BF29_3260	COG0110	maltose O-acetyltransferase activity
BF29_3261	COG0457	Tetratricopeptide repeat
BF29_3262	COG0492	ferredoxin-NADP+ reductase activity
BF29_3263	COG1051	belongs to the nudix hydrolase family
BF29_3264	COG1660	Displays ATPase and GTPase activities
BF29_3265	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BF29_3266	COG1481	regulation of sporulation
BF29_3267	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BF29_3275	COG3842	ATPase activity
BF29_3276	COG2508	Transcriptional regulator
BF29_3278	COG0189	ligase activity
BF29_3279	COG0189	ligase activity
BF29_328	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BF29_328	COG0140	phosphoribosyl-ATP diphosphatase activity
BF29_3282	COG4399	Belongs to the UPF0754 family
BF29_3284	COG0561	phosphatase activity
BF29_3285	COG1024	Enoyl-CoA hydratase
BF29_3287	COG0861	Integral membrane protein TerC family
BF29_3288	COG0701	Predicted permease
BF29_3289	COG3689	TIGRFAM TIGR03943 family protein
BF29_3290	COG0420	3'-5' exonuclease activity
BF29_3291	COG4717	serine-type aminopeptidase activity
BF29_3292	COG3481	metal-dependent phosphohydrolase, HD sub domain
BF29_3294	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BF29_3298	COG1846	Transcriptional regulator
BF29_330	COG2391	methyltransferase activity
BF29_3301	COG0537	adenosine 5'-monophosphoramidase activity
BF29_3302	COG1131	(ABC) transporter
BF29_3303	COG4473	ABC transporter
BF29_3304	COG1473	amidohydrolase
BF29_3305	COG3069	C4-dicarboxylate transmembrane transporter activity
BF29_3307	COG2329	Antibiotic biosynthesis monooxygenase
BF29_3308	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BF29_3309	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BF29_331	COG2962	Rard protein
BF29_3310	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
BF29_3311	COG1309	transcriptional regulator
BF29_3312	COG1511	domain protein
BF29_3313	COG2814	Major facilitator Superfamily
BF29_3314	COG0697	spore germination
BF29_3317	COG1999	signal sequence binding
BF29_332	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BF29_3320	COG0095	Lipoate-protein ligase
BF29_3321	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_3322	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BF29_3324	COG0501	Belongs to the peptidase M48B family
BF29_3326	COG4903	ComK protein
BF29_3328	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
BF29_3329	COG1074	ATP-dependent DNA helicase activity
BF29_333	COG0569	domain protein
BF29_3335	COG2311	Membrane
BF29_3336	COG0179	Fumarylacetoacetate (FAA) hydrolase
BF29_3339	COG1307	EDD domain protein, DegV family
BF29_3341	COG0561	phosphatase activity
BF29_3342	COG2151	metal-sulfur cluster biosynthetic enzyme
BF29_3349	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BF29_3350	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BF29_3353	COG4608	Belongs to the ABC transporter superfamily
BF29_3354	COG0601	transmembrane transport
BF29_3358	COG0180	Tryptophanyl-tRNA synthetase
BF29_3361	COG4166	transmembrane transport
BF29_3362	COG0601	transmembrane transport
BF29_3363	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BF29_3364	COG0444	Belongs to the ABC transporter superfamily
BF29_3365	COG4608	Belongs to the ABC transporter superfamily
BF29_3366	COG1393	Belongs to the ArsC family
BF29_3367	COG4862	establishment of competence for transformation
BF29_3368	COG4469	Competence protein
BF29_3369	COG1164	Oligoendopeptidase f
BF29_337	COG2807	transmembrane transport
BF29_3371	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BF29_3372	COG2346	COG2346, Truncated hemoglobins
BF29_3373	COG0741	lytic transglycosylase activity
BF29_3374	COG4116	CYTH
BF29_3376	COG2357	RelA SpoT domain protein
BF29_3378	COG0564	pseudouridine synthase activity
BF29_3379	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BF29_338	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BF29_3380	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BF29_3388	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BF29_3393	COG2153	protein acetylation
BF29_3395	COG2382	esterase
BF29_340	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BF29_3401	COG1940	carbohydrate kinase activity
BF29_3402	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_3403	COG4152	abc transporter atp-binding protein
BF29_3404	COG1668	transmembrane transport
BF29_3405	COG3579	cysteine-type endopeptidase activity
BF29_3408	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BF29_3409	COG2059	Chromate
BF29_3410	COG2059	Chromate
BF29_3411	COG1522	sequence-specific DNA binding
BF29_3415	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BF29_3416	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BF29_342	COG1278	Cold shock
BF29_3422	COG2963	transposase activity
BF29_3423	COG2801	Transposase and inactivated derivatives
BF29_3424	COG2323	membrane
BF29_3428	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BF29_343	COG0302	gtp cyclohydrolase
BF29_3433	COG0477	Major facilitator Superfamily
BF29_3435	COG1959	2 iron, 2 sulfur cluster binding
BF29_3437	COG0730	response to heat
BF29_3438	COG0783	Belongs to the Dps family
BF29_3439	COG0673	inositol 2-dehydrogenase activity
BF29_344	COG3634	alkyl hydroperoxide reductase activity
BF29_3440	COG3852	Histidine kinase
BF29_3441	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BF29_3443	COG0861	Integral membrane protein TerC family
BF29_3447	COG5002	protein histidine kinase activity
BF29_3448	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BF29_3451	COG0542	response to heat
BF29_3452	COG3949	Membrane
BF29_3454	COG4873	Protein conserved in bacteria
BF29_3456	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BF29_3459	COG2084	Dehydrogenase
BF29_3460	COG0436	Aminotransferase
BF29_3461	COG0835	chemotaxis
BF29_3461	COG0784	Response regulator, receiver
BF29_3463	COG1033	growth of symbiont in host cell
BF29_3463	COG2409	Drug exporters of the RND superfamily
BF29_3467	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_3469	COG4703	Protein of unknown function (DUF1797)
BF29_347	COG0577	efflux transmembrane transporter activity
BF29_3471	COG0517	IMP dehydrogenase activity
BF29_348	COG1136	(ABC) transporter
BF29_349	COG0642	Histidine kinase
BF29_350	COG0745	RESPONSE REGULATOR receiver
BF29_351	COG1113	amino acid transport
BF29_353	COG0477	Major facilitator Superfamily
BF29_355	COG1132	(ABC) transporter
BF29_356	COG1132	(ABC) transporter
BF29_358	COG1380	Effector of murein hydrolase LrgA
BF29_359	COG1346	cytolysis
BF29_360	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_365	COG2309	aminopeptidase activity
BF29_367	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BF29_37	COG3679	Belongs to the UPF0342 family
BF29_371	COG0824	Thioesterase
BF29_373	COG4841	protein insertion into membrane
BF29_374	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
BF29_375	COG1832	CoA-binding protein
BF29_376	COG0187	DNA topoisomerase II activity
BF29_377	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BF29_38	COG4471	UPF0298 protein
BF29_380	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BF29_381	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BF29_381	COG0574	Belongs to the PEP-utilizing enzyme family
BF29_385	COG2070	2-Nitropropane dioxygenase
BF29_386	COG0681	Belongs to the peptidase S26 family
BF29_389	COG0456	acetyltransferase
BF29_390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BF29_391	COG0456	acetyltransferase
BF29_393	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_394	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
BF29_395	COG0351	phosphomethylpyrimidine kinase
BF29_396	COG0352	thiamine-phosphate diphosphorylase activity
BF29_398	COG2258	MOSC domain
BF29_4	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BF29_40	COG0742	ribosomal rna small subunit methyltransferase
BF29_407	COG1309	transcriptional regulator
BF29_41	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BF29_411	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BF29_412	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BF29_414	COG1809	phosphosulfolactate synthase activity
BF29_415	COG2045	Belongs to the ComB family
BF29_416	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BF29_417	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BF29_42	COG3314	Sporulation integral membrane protein YlbJ
BF29_422	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BF29_423	COG0697	spore germination
BF29_424	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BF29_425	COG0022	dehydrogenase e1 component
BF29_426	COG0508	dehydrogenase complex catalyzes the overall conversion of
BF29_427	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BF29_428	COG3284	Transcriptional regulator
BF29_429	COG3264	Mechanosensitive ion channel
BF29_429	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
BF29_43	COG1752	Esterase of the alpha-beta hydrolase superfamily
BF29_431	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BF29_432	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BF29_435	COG0183	Belongs to the thiolase family
BF29_436	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_438	COG0561	phosphatase activity
BF29_443	COG2322	membrane
BF29_446	COG0039	L-malate dehydrogenase activity
BF29_447	COG0475	glutathione-regulated potassium exporter activity
BF29_447	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BF29_45	COG3480	Lon protease (S16) C-terminal proteolytic domain
BF29_451	COG0589	response to stress
BF29_455	COG0583	DNA-binding transcription factor activity
BF29_456	COG2801	Transposase and inactivated derivatives
BF29_457	COG2963	transposase activity
BF29_46	COG1323	Belongs to the UPF0348 family
BF29_466	COG0640	Transcriptional regulator
BF29_467	COG0798	PFAM Bile acid sodium symporter
BF29_468	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BF29_47	COG1399	metal-binding, possibly nucleic acid-binding protein
BF29_475	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_476	COG3773	Cell wall hydrolase
BF29_477	COG2223	nitrite transmembrane transporter activity
BF29_478	COG0708	Exodeoxyribonuclease III
BF29_479	COG2084	Dehydrogenase
BF29_48	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BF29_480	COG0297	glycogen (starch) synthase activity
BF29_481	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BF29_482	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BF29_483	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BF29_487	COG1247	-acetyltransferase
BF29_488	COG0494	nUDIX hydrolase
BF29_489	COG1914	H( )-stimulated, divalent metal cation uptake system
BF29_490	COG0783	Belongs to the Dps family
BF29_492	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BF29_493	COG1131	(ABC) transporter
BF29_499	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BF29_50	COG0454	-acetyltransferase
BF29_501	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_504	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
BF29_505	COG0709	Synthesizes selenophosphate from selenide and ATP
BF29_508	COG0701	Predicted permease
BF29_509	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BF29_51	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BF29_510	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BF29_512	COG1252	NADH dehydrogenase
BF29_513	COG2404	hydrolase activity, acting on ester bonds
BF29_515	COG4990	cell redox homeostasis
BF29_516	COG0789	Transcriptional regulator
BF29_52	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
BF29_522	COG0436	Aminotransferase
BF29_523	COG0165	Argininosuccinate lyase
BF29_524	COG0137	argininosuccinate synthase activity
BF29_525	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BF29_526	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BF29_527	COG0505	Belongs to the CarA family
BF29_528	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BF29_529	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BF29_53	COG2001	Belongs to the MraZ family
BF29_530	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BF29_531	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BF29_538	COG1619	proteins homologs of microcin C7 resistance protein MccF
BF29_539	COG2027	D-alanyl-D-alanine carboxypeptidase
BF29_54	COG0275	rRNA processing
BF29_540	COG0204	Acyl-transferase
BF29_542	COG4846	Membrane protein involved in cytochrome C biogenesis
BF29_543	COG2201	protein-glutamate methylesterase activity
BF29_544	COG0785	Cytochrome C biogenesis protein
BF29_545	COG3763	UPF0154 protein
BF29_548	COG4224	UPF0291 protein
BF29_549	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BF29_55	COG4839	cell division protein FtsL
BF29_551	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BF29_552	COG0174	glutamine synthetase
BF29_553	COG0789	Transcriptional regulator
BF29_554	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BF29_557	COG2233	PERMEase
BF29_559	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BF29_56	COG0768	penicillin binding
BF29_560	COG0116	Belongs to the methyltransferase superfamily
BF29_562	COG4474	Belongs to the UPF0398 family
BF29_564	COG3359	exonuclease
BF29_565	COG1111	helicase
BF29_565	COG1205	dead DEAH box helicase
BF29_566	COG0071	Belongs to the small heat shock protein (HSP20) family
BF29_57	COG0768	penicillin binding
BF29_572	COG3331	DNA recombination
BF29_573	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BF29_573	COG4499	WXG100 protein secretion system (Wss), protein YukC
BF29_574	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BF29_575	COG3935	DnaD domain protein
BF29_576	COG0017	Asparaginyl-tRNA synthetase
BF29_579	COG1199	ATP-dependent helicase activity
BF29_579	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BF29_580	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BF29_581	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BF29_585	COG0438	transferase activity, transferring glycosyl groups
BF29_586	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BF29_587	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BF29_588	COG1694	Mazg nucleotide pyrophosphohydrolase
BF29_589	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF29_591	COG2738	Putative neutral zinc metallopeptidase
BF29_593	COG4347	Protein of unknown function (DUF1405)
BF29_595	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BF29_598	COG5582	Belongs to the UPF0302 family
BF29_599	COG0457	Tetratricopeptide repeat
BF29_60	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BF29_600	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BF29_601	COG0287	Prephenate dehydrogenase
BF29_602	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BF29_603	COG4401	Chorismate mutase type I
BF29_604	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BF29_605	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BF29_606	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BF29_607	COG0105	UTP biosynthetic process
BF29_608	COG0142	geranyltranstransferase activity
BF29_609	COG2226	methyltransferase
BF29_61	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BF29_610	COG0142	geranyltranstransferase activity
BF29_612	COG0776	regulation of translation
BF29_613	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BF29_617	COG1160	GTP binding
BF29_62	COG0772	Belongs to the SEDS family
BF29_620	COG0539	negative regulation of cytoplasmic translation
BF29_621	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BF29_623	COG2959	enzyme of heme biosynthesis
BF29_624	COG3773	Cell wall hydrolase
BF29_624	COG3409	Peptidoglycan-binding domain 1 protein
BF29_625	COG2339	peptidase activity
BF29_626	COG0492	ferredoxin-NADP+ reductase activity
BF29_627	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BF29_629	COG1408	metallophosphoesterase
BF29_63	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BF29_632	COG3546	catalase activity
BF29_635	COG1266	CAAX protease self-immunity
BF29_636	COG0514	ATP-dependent DNA helicase (RecQ)
BF29_639	COG1141	Ferredoxin
BF29_64	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BF29_640	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BF29_641	COG0741	lytic transglycosylase activity
BF29_641	COG0739	heme binding
BF29_641	COG1196	nuclear chromosome segregation
BF29_642	COG5002	protein histidine kinase activity
BF29_643	COG0745	RESPONSE REGULATOR receiver
BF29_644	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BF29_645	COG1333	cytochrome c biogenesis protein
BF29_646	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_647	COG1187	pseudouridine synthase activity
BF29_648	COG0700	Nucleoside recognition
BF29_649	COG2715	membrane protein required for spore maturation
BF29_65	COG0849	cell division
BF29_650	COG1686	Belongs to the peptidase S11 family
BF29_651	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BF29_656	COG0697	spore germination
BF29_66	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BF29_660	COG1191	sigma factor activity
BF29_663	COG1686	Belongs to the peptidase S11 family
BF29_665	COG4974	Belongs to the 'phage' integrase family
BF29_667	COG0735	belongs to the Fur family
BF29_668	COG1300	Membrane
BF29_669	COG1379	DNA repair
BF29_672	COG0667	Aldo Keto reductase
BF29_674	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
BF29_675	COG3853	Toxic anion resistance protein (TelA)
BF29_676	COG1073	alpha beta
BF29_677	COG1388	LysM domain
BF29_677	COG3858	chitin binding
BF29_679	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BF29_68	COG1191	sigma factor activity
BF29_680	COG0300	oxidoreductase activity
BF29_681	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BF29_683	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BF29_686	COG2195	Cleaves the N-terminal amino acid of tripeptides
BF29_688	COG1376	ErfK ybiS ycfS ynhG family protein
BF29_69	COG1191	sigma factor activity
BF29_690	COG1105	Belongs to the carbohydrate kinase PfkB family
BF29_691	COG0508	dehydrogenase complex catalyzes the overall conversion of
BF29_692	COG0022	dehydrogenase e1 component
BF29_693	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BF29_694	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BF29_696	COG3290	protein histidine kinase activity
BF29_696	COG3829	transcription factor binding
BF29_699	COG0584	glycerophosphoryl diester phosphodiesterase
BF29_70	COG1873	PFAM PRC-barrel domain
BF29_700	COG0745	RESPONSE REGULATOR receiver
BF29_701	COG0750	zinc metalloprotease
BF29_702	COG0497	DNA recombination
BF29_704	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
BF29_705	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BF29_708	COG1570	exodeoxyribonuclease VII activity
BF29_709	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BF29_71	COG3584	3D domain protein
BF29_71	COG1388	LysM domain
BF29_711	COG1302	Protein conserved in bacteria
BF29_712	COG0439	Biotin carboxylase
BF29_713	COG0511	ligase activity, forming carbon-carbon bonds
BF29_721	COG3854	ATPases associated with a variety of cellular activities
BF29_722	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BF29_723	COG0006	proline dipeptidase activity
BF29_724	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BF29_726	COG3872	metal-dependent enzyme
BF29_728	COG1752	Esterase of the alpha-beta hydrolase superfamily
BF29_73	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BF29_730	COG1752	Esterase of the alpha-beta hydrolase superfamily
BF29_731	COG0183	Belongs to the thiolase family
BF29_732	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BF29_733	COG0095	Lipoate-protein ligase
BF29_734	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BF29_735	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BF29_737	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BF29_738	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BF29_74	COG1799	cell septum assembly
BF29_741	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BF29_746	COG4537	Required for transformation and DNA binding
BF29_747	COG1459	type II secretion system
BF29_748	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BF29_75	COG0762	integral membrane protein
BF29_751	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BF29_753	COG1940	carbohydrate kinase activity
BF29_754	COG4483	Protein conserved in bacteria
BF29_755	COG0705	Rhomboid family
BF29_755	COG0457	Tetratricopeptide repeat
BF29_757	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BF29_759	COG0768	penicillin binding
BF29_76	COG2302	S4 RNA-binding domain
BF29_760	COG0477	Major facilitator Superfamily
BF29_761	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BF29_763	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BF29_764	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
BF29_765	COG0735	belongs to the Fur family
BF29_766	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BF29_767	COG1121	(ABC) transporter
BF29_769	COG3883	PFAM NLP P60 protein
BF29_769	COG0791	NLP P60 protein
BF29_77	COG3599	regulation of cell shape
BF29_770	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
BF29_771	COG0513	Belongs to the DEAD box helicase family
BF29_773	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BF29_774	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BF29_775	COG2384	SAM-dependent methyltransferase
BF29_776	COG2010	Cytochrome c
BF29_778	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BF29_779	COG0358	DNA primase activity
BF29_781	COG0517	IMP dehydrogenase activity
BF29_783	COG1381	Involved in DNA repair and RecF pathway recombination
BF29_785	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BF29_786	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BF29_787	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BF29_790	COG1702	phosphate starvation-inducible protein PhoH
BF29_793	COG1610	YqeY-like protein
BF29_795	COG1254	Belongs to the acylphosphatase family
BF29_796	COG1283	sodium-dependent phosphate transmembrane transporter activity
BF29_797	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BF29_798	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BF29_799	COG2264	protein methyltransferase activity
BF29_80	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BF29_801	COG0443	Heat shock 70 kDa protein
BF29_802	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BF29_804	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BF29_805	COG0481	GTPase activity
BF29_806	COG0860	N-Acetylmuramoyl-L-alanine amidase
BF29_807	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
BF29_808	COG0268	Binds directly to 16S ribosomal RNA
BF29_809	COG1466	dna polymerase III delta subunit
BF29_81	COG0564	pseudouridine synthase activity
BF29_811	COG0658	competence protein
BF29_811	COG2333	competence protein COMEC
BF29_812	COG2131	deaminase
BF29_813	COG1555	photosystem II stabilization
BF29_813	COG1596	polysaccharide export
BF29_814	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BF29_815	COG2226	methyltransferase
BF29_816	COG0799	negative regulation of ribosome biogenesis
BF29_817	COG1713	HD superfamily hydrolase involved in NAD metabolism
BF29_818	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BF29_819	COG1534	Rna-binding protein
BF29_82	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BF29_821	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BF29_822	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
BF29_823	COG0247	lactate metabolic process
BF29_824	COG0277	FAD linked oxidase domain protein
BF29_825	COG3835	regulator
BF29_826	COG2132	Multicopper oxidase
BF29_827	COG0071	Belongs to the small heat shock protein (HSP20) family
BF29_829	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_83	COG0540	Belongs to the ATCase OTCase family
BF29_831	COG1704	LemA family
BF29_837	COG1183	phosphatidylcholine synthase activity
BF29_839	COG3634	alkyl hydroperoxide reductase activity
BF29_84	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BF29_840	COG0450	alkyl hydroperoxide reductase
BF29_843	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BF29_846	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BF29_847	COG0572	uridine kinase
BF29_848	COG4122	O-methyltransferase activity
BF29_849	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BF29_850	COG3906	Belongs to the UPF0473 family
BF29_851	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BF29_852	COG4472	Bacterial protein of unknown function (DUF965)
BF29_853	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BF29_854	COG0628	permease
BF29_858	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BF29_859	COG0457	Tetratricopeptide repeat
BF29_859	COG1477	protein flavinylation
BF29_860	COG0482	sulfurtransferase activity
BF29_861	COG1104	cysteine desulfurase activity
BF29_862	COG1959	2 iron, 2 sulfur cluster binding
BF29_866	COG0730	response to heat
BF29_867	COG0425	Belongs to the sulfur carrier protein TusA family
BF29_868	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BF29_868	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BF29_869	COG2210	Belongs to the sulfur carrier protein TusA family
BF29_87	COG0543	2 iron, 2 sulfur cluster binding
BF29_870	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BF29_870	COG0425	Belongs to the sulfur carrier protein TusA family
BF29_871	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BF29_872	COG1937	Protein conserved in bacteria
BF29_876	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_878	COG0785	Cytochrome C biogenesis protein
BF29_88	COG0167	dihydroorotate dehydrogenase activity
BF29_881	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BF29_886	COG1028	Short-chain dehydrogenase reductase Sdr
BF29_888	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BF29_889	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BF29_890	COG0385	Bile acid
BF29_892	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BF29_893	COG0124	histidyl-tRNA synthetase
BF29_895	COG3103	Sh3 type 3 domain protein
BF29_895	COG4991	sh3 domain protein
BF29_895	COG0860	N-Acetylmuramoyl-L-alanine amidase
BF29_896	COG2814	Major facilitator Superfamily
BF29_897	COG1566	PFAM secretion protein HlyD family protein
BF29_898	COG1846	Transcriptional regulator
BF29_899	COG1490	D-aminoacyl-tRNA deacylase activity
BF29_90	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BF29_900	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BF29_901	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BF29_902	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BF29_902	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
BF29_903	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BF29_903	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BF29_905	COG2244	polysaccharide biosynthetic process
BF29_906	COG2323	membrane
BF29_908	COG1862	Preprotein translocase
BF29_909	COG0343	queuine tRNA-ribosyltransferase activity
BF29_910	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BF29_913	COG0632	four-way junction helicase activity
BF29_914	COG0217	transcriptional regulatory protein
BF29_916	COG1388	LysM domain
BF29_917	COG1827	regulation of RNA biosynthetic process
BF29_918	COG0077	Prephenate dehydratase
BF29_919	COG4492	Belongs to the UPF0735 family
BF29_920	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BF29_921	COG3290	protein histidine kinase activity
BF29_922	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BF29_923	COG2868	ribosomal protein
BF29_924	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BF29_925	COG1530	ribonuclease E activity
BF29_926	COG1994	Peptidase M50
BF29_928	COG2894	cell division
BF29_929	COG0850	regulation of cytokinetic process
BF29_931	COG1792	Involved in formation and maintenance of cell shape
BF29_932	COG1077	Cell shape determining protein MreB Mrl
BF29_935	COG2003	Belongs to the UPF0758 family
BF29_937	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BF29_94	COG0235	Class ii aldolase
BF29_942	COG1459	type II secretion system
BF29_944	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BF29_95	COG1803	Methylglyoxal synthase
BF29_952	COG0285	dihydrofolate synthase activity
BF29_953	COG0525	valine-tRNA ligase activity
BF29_955	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BF29_956	COG1388	LysM domain
BF29_956	COG1388	LysM domain
BF29_957	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BF29_958	COG0113	porphobilinogen synthase activity
BF29_960	COG0181	hydroxymethylbilane synthase activity
BF29_961	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BF29_964	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BF29_965	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BF29_966	COG1067	ATP-dependent peptidase activity
BF29_966	COG0470	DNA polymerase III
BF29_968	COG0544	peptidyl-prolyl cis-trans isomerase activity
BF29_969	COG0457	Tetratricopeptide repeat
BF29_969	COG1477	protein flavinylation
BF29_97	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BF29_973	COG0622	Phosphoesterase
BF29_974	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BF29_975	COG5401	PFAM Sporulation and spore germination
BF29_978	COG1846	Transcriptional regulator
BF29_98	COG0477	Major facilitator Superfamily
BF29_981	COG2801	Transposase and inactivated derivatives
BF29_982	COG2963	transposase activity
BF29_985	COG2197	response regulator
BF29_986	COG0824	Thioesterase
BF29_987	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BF29_988	COG1053	succinate dehydrogenase
BF29_989	COG2009	succinate dehydrogenase
BF29_99	COG0477	Major facilitator Superfamily
BF29_990	COG1719	4-vinyl reductase, 4VR
BF29_992	COG0322	excinuclease ABC activity
BF29_993	COG3118	belongs to the thioredoxin family
BF29_994	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
BF29_995	COG2086	electron transfer activity
BF29_996	COG1024	Enoyl-CoA hydratase
BF29_997	COG1309	transcriptional regulator
BF29_998	COG0318	PFAM AMP-dependent synthetase and ligase
BF29_999	COG1193	negative regulation of DNA recombination