locus-tag class description MIS31_00005 PF00308 Bacterial dnaA protein MIS31_00005 PF08299 Bacterial dnaA protein helix-turn-helix MIS31_00005 PF11638 DnaA N-terminal domain MIS31_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MIS31_00010 PF02767 DNA polymerase III beta subunit, central domain MIS31_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MIS31_00030 PF02401 LytB protein MIS31_00040 PF01252 Signal peptidase (SPase) II MIS31_00045 PF01197 Ribosomal protein L31 MIS31_00055 PF01743 Poly A polymerase head domain MIS31_00055 PF12626 Polymerase A arginine-rich C-terminus MIS31_00055 PF12627 Probable RNA and SrmB- binding site of polymerase A MIS31_00065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_00070 PF02666 Phosphatidylserine decarboxylase MIS31_00080 PF01925 Sulfite exporter TauE/SafE MIS31_00085 PF05159 Capsule polysaccharide biosynthesis protein MIS31_00090 PF05159 Capsule polysaccharide biosynthesis protein MIS31_00115 PF00857 Isochorismatase family MIS31_00120 PF00892 EamA-like transporter family MIS31_00155 PF01134 Glucose inhibited division protein A MIS31_00155 PF13932 GidA associated domain MIS31_00175 PF01226 Formate/nitrite transporter MIS31_00185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MIS31_00185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MIS31_00190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_00205 PF01196 Ribosomal protein L17 MIS31_00210 PF01000 RNA polymerase Rpb3/RpoA insert domain MIS31_00210 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MIS31_00210 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MIS31_00215 PF00163 Ribosomal protein S4/S9 N-terminal domain MIS31_00215 PF01479 S4 domain MIS31_00220 PF00411 Ribosomal protein S11 MIS31_00225 PF00416 Ribosomal protein S13/S18 MIS31_00230 PF00444 Ribosomal protein L36 MIS31_00235 PF01176 Translation initiation factor 1A / IF-1 MIS31_00240 PF00344 SecY translocase MIS31_00245 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MIS31_00250 PF00327 Ribosomal protein L30p/L7e MIS31_00255 PF03719 Ribosomal protein S5, C-terminal domain MIS31_00255 PF00333 Ribosomal protein S5, N-terminal domain MIS31_00260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MIS31_00265 PF00347 Ribosomal protein L6 MIS31_00270 PF00410 Ribosomal protein S8 MIS31_00275 PF00253 Ribosomal protein S14p/S29e MIS31_00280 PF00281 Ribosomal protein L5 MIS31_00280 PF00673 ribosomal L5P family C-terminus MIS31_00285 PF00467 KOW motif MIS31_00285 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MIS31_00290 PF00238 Ribosomal protein L14p/L23e MIS31_00305 PF00842 Alanine racemase, C-terminal domain MIS31_00305 PF01168 Alanine racemase, N-terminal domain MIS31_00310 PF01546 Peptidase family M20/M25/M40 MIS31_00310 PF07687 Peptidase dimerisation domain MIS31_00320 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MIS31_00320 PF01243 Pyridoxamine 5'-phosphate oxidase MIS31_00325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MIS31_00325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MIS31_00325 PF01488 Shikimate / quinate 5-dehydrogenase MIS31_00330 PF00366 Ribosomal protein S17 MIS31_00335 PF00831 Ribosomal L29 protein MIS31_00340 PF00252 Ribosomal protein L16p/L10e MIS31_00345 PF00189 Ribosomal protein S3, C-terminal domain MIS31_00345 PF07650 KH domain MIS31_00350 PF00237 Ribosomal protein L22p/L17e MIS31_00355 PF00203 Ribosomal protein S19 MIS31_00360 PF00181 Ribosomal Proteins L2, RNA binding domain MIS31_00360 PF03947 Ribosomal Proteins L2, C-terminal domain MIS31_00365 PF00276 Ribosomal protein L23 MIS31_00370 PF00573 Ribosomal protein L4/L1 family MIS31_00375 PF00297 Ribosomal protein L3 MIS31_00385 PF01494 FAD binding domain MIS31_00395 PF01810 LysE type translocator MIS31_00410 PF03884 DNA gyrase inhibitor YacG MIS31_00415 PF01351 Ribonuclease HII MIS31_00425 PF08459 UvrC Helix-hairpin-helix N-terminal MIS31_00425 PF01541 GIY-YIG catalytic domain MIS31_00425 PF02151 UvrB/uvrC motif MIS31_00430 PF01351 Ribonuclease HII MIS31_00435 PF03884 DNA gyrase inhibitor YacG MIS31_00440 PF00939 Sodium:sulfate symporter transmembrane region MIS31_00445 PF02684 Lipid-A-disaccharide synthetase MIS31_00450 PF04997 RNA polymerase Rpb1, domain 1 MIS31_00450 PF00623 RNA polymerase Rpb1, domain 2 MIS31_00450 PF04983 RNA polymerase Rpb1, domain 3 MIS31_00450 PF05000 RNA polymerase Rpb1, domain 4 MIS31_00450 PF04998 RNA polymerase Rpb1, domain 5 MIS31_00460 PF10385 RNA polymerase beta subunit external 1 domain MIS31_00460 PF04560 RNA polymerase Rpb2, domain 7 MIS31_00460 PF00562 RNA polymerase Rpb2, domain 6 MIS31_00460 PF04565 RNA polymerase Rpb2, domain 3 MIS31_00460 PF04561 RNA polymerase Rpb2, domain 2 MIS31_00460 PF04563 RNA polymerase beta subunit MIS31_00465 PF00542 Ribosomal protein L7/L12 C-terminal domain MIS31_00465 PF16320 Ribosomal protein L7/L12 dimerisation domain MIS31_00470 PF00466 Ribosomal protein L10 MIS31_00475 PF00687 Ribosomal protein L1p/L10e family MIS31_00480 PF00298 Ribosomal protein L11, RNA binding domain MIS31_00480 PF03946 Ribosomal protein L11, N-terminal domain MIS31_00485 PF00467 KOW motif MIS31_00485 PF02357 Transcription termination factor nusG MIS31_00500 PF03144 Elongation factor Tu domain 2 MIS31_00500 PF00009 Elongation factor Tu GTP binding domain MIS31_00500 PF03143 Elongation factor Tu C-terminal domain MIS31_00520 PF00037 4Fe-4S binding domain MIS31_00525 PF01170 Putative RNA methylase family UPF0020 MIS31_00525 PF02926 THUMP domain MIS31_00525 PF10672 S-adenosylmethionine-dependent methyltransferase MIS31_00530 PF00773 RNB domain MIS31_00535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MIS31_00535 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MIS31_00565 PF00571 CBS domain MIS31_00565 PF00478 IMP dehydrogenase / GMP reductase domain MIS31_00575 PF00654 Voltage gated chloride channel MIS31_00580 PF01814 Hemerythrin HHE cation binding domain MIS31_00585 PF00521 DNA gyrase/topoisomerase IV, subunit A MIS31_00585 PF03989 DNA gyrase C-terminal domain, beta-propeller MIS31_00590 PF00884 Sulfatase MIS31_00595 PF00171 Aldehyde dehydrogenase family MIS31_00605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS31_00630 PF00202 Aminotransferase class-III MIS31_00655 PF05192 MutS domain III MIS31_00655 PF00488 MutS domain V MIS31_00655 PF05190 MutS family domain IV MIS31_00655 PF01624 MutS domain I MIS31_00655 PF05188 MutS domain II MIS31_00660 PF18075 FtsX extracellular domain MIS31_00665 PF00005 ABC transporter MIS31_00670 PF02978 Signal peptide binding domain MIS31_00670 PF00448 SRP54-type protein, GTPase domain MIS31_00670 PF02881 SRP54-type protein, helical bundle domain MIS31_00675 PF06123 Inner membrane protein CreD MIS31_00680 PF00072 Response regulator receiver domain MIS31_00680 PF00486 Transcriptional regulatory protein, C terminal MIS31_00685 PF00672 HAMP domain MIS31_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_00685 PF00512 His Kinase A (phospho-acceptor) domain MIS31_00690 PF17782 DprA winged helix domain MIS31_00690 PF02481 DNA recombination-mediator protein A MIS31_00695 PF00889 Elongation factor TS MIS31_00700 PF00318 Ribosomal protein S2 MIS31_00705 PF00162 Phosphoglycerate kinase MIS31_00710 PF18073 Rubredoxin metal binding domain MIS31_00720 PF02371 Transposase IS116/IS110/IS902 family MIS31_00720 PF01548 Transposase MIS31_00760 PF01300 Telomere recombination MIS31_00775 PF13018 Extended Signal Peptide of Type V secretion system MIS31_00775 PF03895 YadA-like membrane anchor domain MIS31_00775 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin MIS31_00775 PF05662 Coiled stalk of trimeric autotransporter adhesin MIS31_00780 PF12631 MnmE helical domain MIS31_00780 PF10396 GTP-binding protein TrmE N-terminus MIS31_00780 PF01926 50S ribosome-binding GTPase MIS31_00795 PF18389 TrmO C-terminal domain MIS31_00795 PF01980 tRNA-methyltransferase O MIS31_00815 PF00472 RF-1 domain MIS31_00820 PF00348 Polyprenyl synthetase MIS31_00825 PF02609 Exonuclease VII small subunit MIS31_00830 PF00829 Ribosomal prokaryotic L21 protein MIS31_00835 PF01016 Ribosomal L27 protein MIS31_00845 PF00348 Polyprenyl synthetase MIS31_00850 PF04284 Protein of unknown function (DUF441) MIS31_00870 PF00356 Bacterial regulatory proteins, lacI family MIS31_00875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MIS31_00875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MIS31_00880 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MIS31_00885 PF07690 Major Facilitator Superfamily MIS31_00890 PF01906 Putative heavy-metal-binding MIS31_00895 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MIS31_00895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MIS31_00900 PF01012 Electron transfer flavoprotein domain MIS31_00905 PF00766 Electron transfer flavoprotein FAD-binding domain MIS31_00905 PF01012 Electron transfer flavoprotein domain MIS31_00910 PF07977 FabA-like domain MIS31_00915 PF00132 Bacterial transferase hexapeptide (six repeats) MIS31_00915 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MIS31_00935 PF00999 Sodium/hydrogen exchanger family MIS31_00935 PF02080 TrkA-C domain MIS31_00935 PF03471 Transporter associated domain MIS31_00940 PF02562 PhoH-like protein MIS31_00945 PF01235 Sodium:alanine symporter family MIS31_00970 PF08264 Anticodon-binding domain of tRNA MIS31_00970 PF00133 tRNA synthetases class I (I, L, M and V) MIS31_00970 PF06827 Zinc finger found in FPG and IleRS MIS31_00975 PF18254 HMW1 domain 2 MIS31_00975 PF18071 HMW1C N-terminal MIS31_00990 PF01367 5'-3' exonuclease, C-terminal SAM fold MIS31_00990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MIS31_00990 PF00476 DNA polymerase family A MIS31_00990 PF01612 3'-5' exonuclease MIS31_00995 PF02075 Crossover junction endodeoxyribonuclease RuvC MIS31_01000 PF00005 ABC transporter MIS31_01000 PF00664 ABC transporter transmembrane region MIS31_01015 PF02321 Outer membrane efflux protein MIS31_01020 PF02600 Disulfide bond formation protein DsbB MIS31_01025 PF01925 Sulfite exporter TauE/SafE MIS31_01035 PF00092 von Willebrand factor type A domain MIS31_01035 PF12450 von Willebrand factor MIS31_01035 PF12034 Domain of unknown function (DUF3520) MIS31_01040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MIS31_01040 PF13288 DXP reductoisomerase C-terminal domain MIS31_01040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MIS31_01045 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MIS31_01065 PF00114 Pilin (bacterial filament) MIS31_01065 PF07963 Prokaryotic N-terminal methylation motif MIS31_01070 PF00114 Pilin (bacterial filament) MIS31_01070 PF07963 Prokaryotic N-terminal methylation motif MIS31_01075 PF02844 Phosphoribosylglycinamide synthetase, N domain MIS31_01075 PF02843 Phosphoribosylglycinamide synthetase, C domain MIS31_01075 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MIS31_01085 PF00696 Amino acid kinase family MIS31_01090 PF01220 Dehydroquinase class II MIS31_01100 PF00056 lactate/malate dehydrogenase, NAD binding domain MIS31_01100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MIS31_01105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_01105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MIS31_01115 PF12804 MobA-like NTP transferase domain MIS31_01115 PF00132 Bacterial transferase hexapeptide (six repeats) MIS31_01125 PF01594 AI-2E family transporter MIS31_01170 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MIS31_01170 PF00533 BRCA1 C Terminus (BRCT) domain MIS31_01170 PF01653 NAD-dependent DNA ligase adenylation domain MIS31_01170 PF03120 NAD-dependent DNA ligase OB-fold domain MIS31_01170 PF12826 Helix-hairpin-helix motif MIS31_01190 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MIS31_01195 PF17820 PDZ domain MIS31_01195 PF02163 Peptidase family M50 MIS31_01200 PF07244 Surface antigen variable number repeat MIS31_01200 PF01103 Surface antigen MIS31_01210 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MIS31_01210 PF00132 Bacterial transferase hexapeptide (six repeats) MIS31_01220 PF07681 DoxX MIS31_01225 PF01435 Peptidase family M48 MIS31_01225 PF07720 Tetratricopeptide repeat MIS31_01230 PF01906 Putative heavy-metal-binding MIS31_01235 PF01906 Putative heavy-metal-binding MIS31_01245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS31_01245 PF07497 Rho termination factor, RNA-binding domain MIS31_01245 PF07498 Rho termination factor, N-terminal domain MIS31_01250 PF00793 DAHP synthetase I family MIS31_01265 PF07499 RuvA, C-terminal domain MIS31_01265 PF01330 RuvA N terminal domain MIS31_01270 PF01510 N-acetylmuramoyl-L-alanine amidase MIS31_01280 PF00342 Phosphoglucose isomerase MIS31_01285 PF02685 Glucokinase MIS31_01285 PF01418 Helix-turn-helix domain, rpiR family MIS31_01285 PF01380 SIS domain MIS31_01290 PF00293 NUDIX domain MIS31_01295 PF02685 Glucokinase MIS31_01300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MIS31_01305 PF01810 LysE type translocator MIS31_01315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MIS31_01315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MIS31_01320 PF00920 Dehydratase family MIS31_01325 PF00300 Histidine phosphatase superfamily (branch 1) MIS31_01330 PF00535 Glycosyl transferase family 2 MIS31_01340 PF01928 CYTH domain MIS31_01345 PF00830 Ribosomal L28 family MIS31_01350 PF00471 Ribosomal protein L33 MIS31_01355 PF05675 Protein of unknown function (DUF817) MIS31_01360 PF01081 KDPG and KHG aldolase MIS31_01370 PF07715 TonB-dependent Receptor Plug Domain MIS31_01370 PF00593 TonB dependent receptor MIS31_01375 PF00009 Elongation factor Tu GTP binding domain MIS31_01375 PF03144 Elongation factor Tu domain 2 MIS31_01375 PF03143 Elongation factor Tu C-terminal domain MIS31_01380 PF00338 Ribosomal protein S10p/S20e MIS31_01385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MIS31_01390 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MIS31_01405 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MIS31_01410 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MIS31_01430 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MIS31_01430 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MIS31_01430 PF10531 SLBB domain MIS31_01440 PF04480 Protein of unknown function (DUF559) MIS31_01445 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MIS31_01445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MIS31_01445 PF00384 Molybdopterin oxidoreductase MIS31_01450 PF00146 NADH dehydrogenase MIS31_01455 PF12838 4Fe-4S dicluster domain MIS31_01460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MIS31_01465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MIS31_01480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MIS31_01480 PF00361 Proton-conducting membrane transporter MIS31_01485 PF00857 Isochorismatase family MIS31_01490 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus MIS31_01490 PF00361 Proton-conducting membrane transporter MIS31_01495 PF00361 Proton-conducting membrane transporter MIS31_01500 PF00465 Iron-containing alcohol dehydrogenase MIS31_01505 PF01116 Fructose-bisphosphate aldolase class-II MIS31_01515 PF00570 HRDC domain MIS31_01515 PF00270 DEAD/DEAH box helicase MIS31_01515 PF00271 Helicase conserved C-terminal domain MIS31_01515 PF16124 RecQ zinc-binding MIS31_01515 PF09382 RQC domain MIS31_01520 PF01336 OB-fold nucleic acid binding domain MIS31_01520 PF00152 tRNA synthetases class II (D, K and N) MIS31_01525 PF08447 PAS fold MIS31_01525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MIS31_01535 PF08447 PAS fold MIS31_01535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MIS31_01550 PF00696 Amino acid kinase family MIS31_01555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MIS31_01555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MIS31_01565 PF13520 Amino acid permease MIS31_01570 PF01380 SIS domain MIS31_01575 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MIS31_01590 PF02542 YgbB family MIS31_01615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MIS31_01625 PF01025 GrpE MIS31_01635 PF00860 Permease family MIS31_01640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MIS31_01645 PF00149 Calcineurin-like phosphoesterase MIS31_01655 PF00226 DnaJ domain MIS31_01655 PF00684 DnaJ central domain MIS31_01655 PF01556 DnaJ C terminal domain MIS31_01660 PF01699 Sodium/calcium exchanger protein MIS31_01665 PF00920 Dehydratase family MIS31_01685 PF08264 Anticodon-binding domain of tRNA MIS31_01685 PF10458 Valyl tRNA synthetase tRNA binding arm MIS31_01685 PF00133 tRNA synthetases class I (I, L, M and V) MIS31_01700 PF01432 Peptidase family M3 MIS31_01710 PF02810 SEC-C motif MIS31_01710 PF01043 SecA preprotein cross-linking domain MIS31_01710 PF07516 SecA Wing and Scaffold domain MIS31_01710 PF07517 SecA DEAD-like domain MIS31_01730 PF01814 Hemerythrin HHE cation binding domain MIS31_01735 PF01963 TraB family MIS31_01740 PF16325 Peptidase family U32 C-terminal domain MIS31_01740 PF01136 Peptidase family U32 MIS31_01750 PF00535 Glycosyl transferase family 2 MIS31_01755 PF02563 Polysaccharide biosynthesis/export protein MIS31_01765 PF01061 ABC-2 type transporter MIS31_01770 PF00005 ABC transporter MIS31_01790 PF00127 Copper binding proteins, plastocyanin/azurin family MIS31_01825 PF00483 Nucleotidyl transferase MIS31_01845 PF01368 DHH family MIS31_01845 PF17768 RecJ OB domain MIS31_01845 PF02272 DHHA1 domain MIS31_01850 PF00300 Histidine phosphatase superfamily (branch 1) MIS31_01860 PF02632 BioY family MIS31_01870 PF02492 CobW/HypB/UreG, nucleotide-binding domain MIS31_01870 PF07683 Cobalamin synthesis protein cobW C-terminal domain MIS31_01875 PF00535 Glycosyl transferase family 2 MIS31_01890 PF04357 TamB, inner membrane protein subunit of TAM complex MIS31_01900 PF00886 Ribosomal protein S16 MIS31_01905 PF05239 PRC-barrel domain MIS31_01905 PF01782 RimM N-terminal domain MIS31_01910 PF01746 tRNA (Guanine-1)-methyltransferase MIS31_01915 PF01245 Ribosomal protein L19 MIS31_01920 PF02545 Maf-like protein MIS31_01925 PF02620 Large ribosomal RNA subunit accumulation protein YceD MIS31_01930 PF01783 Ribosomal L32p protein family MIS31_01945 PF02504 Fatty acid synthesis protein MIS31_01950 PF00267 Gram-negative porin MIS31_01960 PF07670 Nucleoside recognition MIS31_01960 PF02421 Ferrous iron transport protein B MIS31_01960 PF07664 Ferrous iron transport protein B C terminus MIS31_01970 PF01206 Sulfurtransferase TusA MIS31_01980 PF02580 D-Tyr-tRNA(Tyr) deacylase MIS31_01985 PF00842 Alanine racemase, C-terminal domain MIS31_01985 PF01168 Alanine racemase, N-terminal domain MIS31_01990 PF01042 Endoribonuclease L-PSP MIS31_01995 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MIS31_02005 PF00483 Nucleotidyl transferase MIS31_02010 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS31_02015 PF02649 Type I GTP cyclohydrolase folE2 MIS31_02025 PF00588 SpoU rRNA Methylase family MIS31_02030 PF00156 Phosphoribosyl transferase domain MIS31_02035 PF00571 CBS domain MIS31_02035 PF03448 MgtE intracellular N domain MIS31_02035 PF01769 Divalent cation transporter MIS31_02040 PF00291 Pyridoxal-phosphate dependent enzyme MIS31_02040 PF14821 Threonine synthase N terminus MIS31_02045 PF13416 Bacterial extracellular solute-binding protein MIS31_02050 PF00166 Chaperonin 10 Kd subunit MIS31_02060 PF00118 TCP-1/cpn60 chaperonin family MIS31_02065 PF00156 Phosphoribosyl transferase domain MIS31_02065 PF01171 PP-loop family MIS31_02065 PF11734 TilS substrate C-terminal domain MIS31_02075 PF00893 Small Multidrug Resistance protein MIS31_02095 PF12706 Beta-lactamase superfamily domain MIS31_02100 PF01037 Lrp/AsnC ligand binding domain MIS31_02125 PF01235 Sodium:alanine symporter family MIS31_02130 PF00255 Glutathione peroxidase MIS31_02140 PF00072 Response regulator receiver domain MIS31_02145 PF01584 CheW-like domain MIS31_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_02145 PF01627 Hpt domain MIS31_02145 PF07194 P2 response regulator binding domain MIS31_02145 PF02895 Signal transducing histidine kinase, homodimeric domain MIS31_02150 PF01709 Transcriptional regulator MIS31_02160 PF00119 ATP synthase A chain MIS31_02165 PF00137 ATP synthase subunit C MIS31_02170 PF00430 ATP synthase B/B' CF(0) MIS31_02175 PF00213 ATP synthase delta (OSCP) subunit MIS31_02180 PF02874 ATP synthase alpha/beta family, beta-barrel domain MIS31_02180 PF00306 ATP synthase alpha/beta chain, C terminal domain MIS31_02180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS31_02185 PF00231 ATP synthase MIS31_02190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS31_02190 PF02874 ATP synthase alpha/beta family, beta-barrel domain MIS31_02195 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MIS31_02200 PF14579 Helix-hairpin-helix motif MIS31_02200 PF01336 OB-fold nucleic acid binding domain MIS31_02200 PF07733 Bacterial DNA polymerase III alpha NTPase domain MIS31_02200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MIS31_02200 PF02811 PHP domain MIS31_02210 PF03144 Elongation factor Tu domain 2 MIS31_02210 PF16658 Class II release factor RF3, C-terminal domain MIS31_02210 PF00009 Elongation factor Tu GTP binding domain MIS31_02215 PF06956 Regulator of RNA terminal phosphate cyclase MIS31_02215 PF00158 Sigma-54 interaction domain MIS31_02240 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family MIS31_02260 PF02237 Biotin protein ligase C terminal domain MIS31_02260 PF03099 Biotin/lipoate A/B protein ligase family MIS31_02260 PF03309 Type III pantothenate kinase MIS31_02265 PF04228 Putative neutral zinc metallopeptidase MIS31_02305 PF14693 Ribosomal protein TL5, C-terminal domain MIS31_02305 PF01386 Ribosomal L25p family MIS31_02310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MIS31_02310 PF14572 Phosphoribosyl synthetase-associated domain MIS31_02325 PF08544 GHMP kinases C terminal MIS31_02325 PF00288 GHMP kinases N terminal domain MIS31_02335 PF03550 Outer membrane lipoprotein LolB MIS31_02345 PF12147 Putative methyltransferase MIS31_02345 PF12146 Serine aminopeptidase, S33 MIS31_02355 PF03739 Lipopolysaccharide export system permease LptF/LptG MIS31_02385 PF13180 PDZ domain MIS31_02385 PF03572 Peptidase family S41 MIS31_02390 PF17946 RecC C-terminal domain MIS31_02425 PF02470 MlaD protein MIS31_02430 PF02405 Permease MlaE MIS31_02440 PF00005 ABC transporter MIS31_02460 PF00925 GTP cyclohydrolase II MIS31_02475 PF04474 Protein of unknown function (DUF554) MIS31_02480 PF01966 HD domain MIS31_02495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MIS31_02500 PF01119 DNA mismatch repair protein, C-terminal domain MIS31_02500 PF08676 MutL C terminal dimerisation domain MIS31_02510 PF08335 GlnD PII-uridylyltransferase MIS31_02510 PF03710 Glutamate-ammonia ligase adenylyltransferase MIS31_02515 PF01430 Hsp33 protein MIS31_02535 PF01784 NIF3 (NGG1p interacting factor 3) MIS31_02540 PF00355 Rieske [2Fe-2S] domain MIS31_02540 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MIS31_02545 PF00032 Cytochrome b(C-terminal)/b6/petD MIS31_02545 PF00033 Cytochrome b/b6/petB MIS31_02550 PF02167 Cytochrome C1 family MIS31_02585 PF02899 Phage integrase, N-terminal SAM-like domain MIS31_02585 PF00589 Phage integrase family MIS31_02735 PF17288 Terminase RNAseH like domain MIS31_02735 PF04466 Phage terminase large subunit MIS31_02795 PF01695 IstB-like ATP binding protein MIS31_02805 PF10548 P22AR C-terminal domain MIS31_02805 PF08346 AntA/AntB antirepressor MIS31_02835 PF00717 Peptidase S24-like MIS31_02835 PF01381 Helix-turn-helix MIS31_02880 PF06630 Enterobacterial exodeoxyribonuclease VIII MIS31_02880 PF12684 PDDEXK-like domain of unknown function (DUF3799) MIS31_02900 PF00436 Single-strand binding protein family MIS31_02910 PF04381 Putative exonuclease, RdgC MIS31_02965 PF00950 ABC 3 transport family MIS31_02985 PF04977 Septum formation initiator MIS31_02990 PF00113 Enolase, C-terminal TIM barrel domain MIS31_02990 PF03952 Enolase, N-terminal domain MIS31_03010 PF01649 Ribosomal protein S20 MIS31_03015 PF03831 PhnA domain MIS31_03015 PF08274 PhnA Zinc-Ribbon MIS31_03025 PF01636 Phosphotransferase enzyme family MIS31_03030 PF04453 LPS transport system D MIS31_03035 PF09312 SurA N-terminal domain MIS31_03035 PF00639 PPIC-type PPIASE domain MIS31_03045 PF17848 Acetyl-coA carboxylase zinc finger domain MIS31_03045 PF01039 Carboxyl transferase domain MIS31_03050 PF01975 Survival protein SurE MIS31_03055 PF01451 Low molecular weight phosphotyrosine protein phosphatase MIS31_03080 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_03085 PF00012 Hsp70 protein MIS31_03105 PF01618 MotA/TolQ/ExbB proton channel family MIS31_03110 PF02472 Biopolymer transport protein ExbD/TolR MIS31_03125 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_03130 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_03135 PF00005 ABC transporter MIS31_03140 PF05681 Fumarate hydratase (Fumerase) MIS31_03140 PF05683 Fumarase C-terminus MIS31_03150 PF00890 FAD binding domain MIS31_03150 PF02910 Fumarate reductase flavoprotein C-term MIS31_03155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MIS31_03155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MIS31_03155 PF10531 SLBB domain MIS31_03160 PF00939 Sodium:sulfate symporter transmembrane region MIS31_03180 PF01541 GIY-YIG catalytic domain MIS31_03180 PF00929 Exonuclease MIS31_03185 PF00719 Inorganic pyrophosphatase MIS31_03190 PF00772 DnaB-like helicase N terminal domain MIS31_03190 PF03796 DnaB-like helicase C terminal domain MIS31_03230 PF01668 SmpB protein MIS31_03240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MIS31_03250 PF00885 6,7-dimethyl-8-ribityllumazine synthase MIS31_03255 PF01029 NusB family MIS31_03270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS31_03270 PF02824 TGS domain MIS31_03270 PF03129 Anticodon binding domain MIS31_03270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MIS31_03275 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_03285 PF02926 THUMP domain MIS31_03285 PF01170 Putative RNA methylase family UPF0020 MIS31_03305 PF00115 Cytochrome C and Quinol oxidase polypeptide I MIS31_03320 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MIS31_03320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MIS31_03325 PF00312 Ribosomal protein S15 MIS31_03335 PF02677 Epoxyqueuosine reductase QueH MIS31_03340 PF13291 ACT domain MIS31_03340 PF02824 TGS domain MIS31_03340 PF04607 Region found in RelA / SpoT proteins MIS31_03360 PF00216 Bacterial DNA-binding protein MIS31_03365 PF00575 S1 RNA binding domain MIS31_03370 PF02224 Cytidylate kinase MIS31_03375 PF00923 Transaldolase/Fructose-6-phosphate aldolase MIS31_03380 PF08502 LeuA allosteric (dimerisation) domain MIS31_03380 PF00682 HMGL-like MIS31_03385 PF03150 Di-haem cytochrome c peroxidase MIS31_03385 PF00034 Cytochrome c MIS31_03390 PF08264 Anticodon-binding domain of tRNA MIS31_03390 PF01588 Putative tRNA binding domain MIS31_03390 PF09334 tRNA synthetases class I (M) MIS31_03400 PF13746 4Fe-4S dicluster domain MIS31_03400 PF12801 4Fe-4S binding domain MIS31_03400 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MIS31_03405 PF06969 HemN C-terminal domain MIS31_03405 PF04055 Radical SAM superfamily MIS31_03410 PF04325 Protein of unknown function (DUF465) MIS31_03415 PF02223 Thymidylate kinase MIS31_03425 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS31_03435 PF04279 Intracellular septation protein A MIS31_03440 PF03795 YCII-related domain MIS31_03455 PF00561 alpha/beta hydrolase fold MIS31_03465 PF00707 Translation initiation factor IF-3, C-terminal domain MIS31_03465 PF05198 Translation initiation factor IF-3, N-terminal domain MIS31_03470 PF01632 Ribosomal protein L35 MIS31_03475 PF00453 Ribosomal protein L20 MIS31_03480 PF14437 MafB19-like deaminase MIS31_03485 PF00140 Sigma-70 factor, region 1.2 MIS31_03485 PF04542 Sigma-70 region 2 MIS31_03485 PF04545 Sigma-70, region 4 MIS31_03490 PF01702 Queuine tRNA-ribosyltransferase MIS31_03495 PF02660 Glycerol-3-phosphate acyltransferase MIS31_03500 PF02152 Dihydroneopterin aldolase MIS31_03505 PF00850 Histone deacetylase domain MIS31_03515 PF01208 Uroporphyrinogen decarboxylase (URO-D) MIS31_03525 PF02535 ZIP Zinc transporter MIS31_03530 PF00398 Ribosomal RNA adenine dimethylase MIS31_03555 PF00005 ABC transporter MIS31_03560 PF03605 Anaerobic c4-dicarboxylate membrane transporter MIS31_03565 PF07715 TonB-dependent Receptor Plug Domain MIS31_03565 PF00593 TonB dependent receptor MIS31_03570 PF00149 Calcineurin-like phosphoesterase MIS31_03575 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_03575 PF16193 AAA C-terminal domain MIS31_03575 PF12002 MgsA AAA+ ATPase C terminal MIS31_03605 PF01066 CDP-alcohol phosphatidyltransferase MIS31_03610 PF01476 LysM domain MIS31_03610 PF01476 LysM domain MIS31_03610 PF01464 Transglycosylase SLT domain MIS31_03610 PF01464 Transglycosylase SLT domain MIS31_03625 PF02132 RecR protein MIS31_03625 PF13662 Toprim domain MIS31_03630 PF00692 dUTPase MIS31_03640 PF04381 Putative exonuclease, RdgC MIS31_03660 PF00270 DEAD/DEAH box helicase MIS31_03660 PF00271 Helicase conserved C-terminal domain MIS31_03665 PF04060 Putative Fe-S cluster MIS31_03670 PF17762 HTH domain found in ParB protein MIS31_03670 PF02195 ParB-like nuclease domain MIS31_03675 PF01467 Cytidylyltransferase-like MIS31_03685 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MIS31_03715 PF16363 GDP-mannose 4,6 dehydratase MIS31_03720 PF00005 ABC transporter MIS31_03725 PF04321 RmlD substrate binding domain MIS31_03735 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MIS31_03740 PF00849 RNA pseudouridylate synthase MIS31_03745 PF00750 tRNA synthetases class I (R) MIS31_03745 PF03485 Arginyl tRNA synthetase N terminal domain MIS31_03745 PF05746 DALR anticodon binding domain MIS31_03750 PF00588 SpoU rRNA Methylase family MIS31_03750 PF08032 RNA 2'-O ribose methyltransferase substrate binding MIS31_03760 PF00664 ABC transporter transmembrane region MIS31_03760 PF00005 ABC transporter MIS31_03765 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_03770 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_03775 PF00005 ABC transporter MIS31_03775 PF08402 TOBE domain MIS31_03780 PF02254 TrkA-N domain MIS31_03780 PF02080 TrkA-C domain MIS31_03795 PF08032 RNA 2'-O ribose methyltransferase substrate binding MIS31_03795 PF00588 SpoU rRNA Methylase family MIS31_03815 PF16921 Tex protein YqgF-like domain MIS31_03815 PF09371 Tex-like protein N-terminal domain MIS31_03815 PF00575 S1 RNA binding domain MIS31_03815 PF17674 HHH domain MIS31_03835 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_03840 PF00933 Glycosyl hydrolase family 3 N terminal domain MIS31_03845 PF01026 TatD related DNase MIS31_03855 PF09115 DNA polymerase III, delta subunit, C terminal MIS31_03890 PF02403 Seryl-tRNA synthetase N-terminal domain MIS31_03890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS31_03905 PF04403 Paraquat-inducible protein A MIS31_03910 PF00440 Bacterial regulatory proteins, tetR family MIS31_03910 PF08361 MAATS-type transcriptional repressor, C-terminal region MIS31_03915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS31_03915 PF00529 HlyD membrane-fusion protein of T1SS MIS31_03920 PF00873 AcrB/AcrD/AcrF family MIS31_03930 PF01098 Cell cycle protein MIS31_03935 PF03033 Glycosyltransferase family 28 N-terminal domain MIS31_03935 PF04101 Glycosyltransferase family 28 C-terminal domain MIS31_03940 PF02541 Ppx/GppA phosphatase family MIS31_03950 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_03965 PF01850 PIN domain MIS31_03970 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MIS31_03980 PF00271 Helicase conserved C-terminal domain MIS31_03980 PF04851 Type III restriction enzyme, res subunit MIS31_03980 PF02151 UvrB/uvrC motif MIS31_03980 PF12344 Ultra-violet resistance protein B MIS31_03980 PF17757 UvrB interaction domain MIS31_03995 PF00209 Sodium:neurotransmitter symporter family MIS31_04000 PF01022 Bacterial regulatory protein, arsR family MIS31_04005 PF00581 Rhodanese-like domain MIS31_04005 PF11127 Protein of unknown function (DUF2892) MIS31_04015 PF00464 Serine hydroxymethyltransferase MIS31_04020 PF02785 Biotin carboxylase C-terminal domain MIS31_04020 PF00289 Biotin carboxylase, N-terminal domain MIS31_04020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MIS31_04030 PF00364 Biotin-requiring enzyme MIS31_04040 PF00581 Rhodanese-like domain MIS31_04045 PF02652 L-lactate permease MIS31_04050 PF11870 Domain of unknown function (DUF3390) MIS31_04050 PF02589 LUD domain MIS31_04050 PF13183 4Fe-4S dicluster domain MIS31_04055 PF02589 LUD domain MIS31_04060 PF02754 Cysteine-rich domain MIS31_04065 PF17764 3′ DNA-binding domain (3′BD) MIS31_04065 PF18074 Primosomal protein N C-terminal domain MIS31_04065 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MIS31_04065 PF00271 Helicase conserved C-terminal domain MIS31_04065 PF00270 DEAD/DEAH box helicase MIS31_04070 PF02219 Methylenetetrahydrofolate reductase MIS31_04075 PF01717 Cobalamin-independent synthase, Catalytic domain MIS31_04075 PF08267 Cobalamin-independent synthase, N-terminal domain MIS31_04080 PF02565 Recombination protein O C terminal MIS31_04080 PF11967 Recombination protein O N terminal MIS31_04085 PF00271 Helicase conserved C-terminal domain MIS31_04085 PF00270 DEAD/DEAH box helicase MIS31_04085 PF17191 RecG wedge domain MIS31_04090 PF01551 Peptidase family M23 MIS31_04100 PF00557 Metallopeptidase family M24 MIS31_04105 PF02673 Bacitracin resistance protein BacA MIS31_04120 PF01078 Magnesium chelatase, subunit ChlI MIS31_04120 PF13335 Magnesium chelatase, subunit ChlI C-terminal MIS31_04125 PF04380 Membrane fusogenic activity MIS31_04130 PF02773 S-adenosylmethionine synthetase, C-terminal domain MIS31_04130 PF02772 S-adenosylmethionine synthetase, central domain MIS31_04130 PF00438 S-adenosylmethionine synthetase, N-terminal domain MIS31_04135 PF00155 Aminotransferase class I and II MIS31_04140 PF03553 Na+/H+ antiporter family MIS31_04145 PF00391 PEP-utilising enzyme, mobile domain MIS31_04145 PF02896 PEP-utilising enzyme, TIM barrel domain MIS31_04145 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MIS31_04160 PF00589 Phage integrase family MIS31_04160 PF02899 Phage integrase, N-terminal SAM-like domain MIS31_04175 PF00958 GMP synthase C terminal domain MIS31_04175 PF00117 Glutamine amidotransferase class-I MIS31_04175 PF02540 NAD synthase MIS31_04185 PF01258 Prokaryotic dksA/traR C4-type zinc finger MIS31_04195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_04195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MIS31_04200 PF01189 16S rRNA methyltransferase RsmB/F MIS31_04200 PF01029 NusB family MIS31_04210 PF00672 HAMP domain MIS31_04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_04210 PF00512 His Kinase A (phospho-acceptor) domain MIS31_04210 PF00989 PAS fold MIS31_04215 PF00072 Response regulator receiver domain MIS31_04215 PF02954 Bacterial regulatory protein, Fis family MIS31_04215 PF00158 Sigma-54 interaction domain MIS31_04220 PF03102 NeuB family MIS31_04220 PF08666 SAF domain MIS31_04225 PF02687 FtsX-like permease family MIS31_04225 PF12704 MacB-like periplasmic core domain MIS31_04230 PF00005 ABC transporter MIS31_04245 PF02253 Phospholipase A1 MIS31_04255 PF04471 Restriction endonuclease MIS31_04255 PF14338 Mrr N-terminal domain MIS31_04260 PF00152 tRNA synthetases class II (D, K and N) MIS31_04260 PF02938 GAD domain MIS31_04260 PF01336 OB-fold nucleic acid binding domain MIS31_04265 PF02595 Glycerate kinase family MIS31_04280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MIS31_04280 PF00271 Helicase conserved C-terminal domain MIS31_04280 PF04408 Helicase associated domain (HA2) MIS31_04280 PF11898 Domain of unknown function (DUF3418) MIS31_04280 PF00270 DEAD/DEAH box helicase MIS31_04290 PF01797 Transposase IS200 like MIS31_04295 PF00271 Helicase conserved C-terminal domain MIS31_04295 PF04408 Helicase associated domain (HA2) MIS31_04295 PF11898 Domain of unknown function (DUF3418) MIS31_04295 PF00270 DEAD/DEAH box helicase MIS31_04295 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MIS31_04305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MIS31_04310 PF01850 PIN domain MIS31_04340 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MIS31_04340 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MIS31_04340 PF06827 Zinc finger found in FPG and IleRS MIS31_04350 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_04355 PF02447 GntP family permease MIS31_04360 PF12724 Flavodoxin domain MIS31_04365 PF00311 Phosphoenolpyruvate carboxylase MIS31_04370 PF00128 Alpha amylase, catalytic domain MIS31_04375 PF17209 Hfq protein MIS31_04385 PF01476 LysM domain MIS31_04385 PF01551 Peptidase family M23 MIS31_04395 PF07943 Penicillin-binding protein 5, C-terminal domain MIS31_04395 PF00768 D-alanyl-D-alanine carboxypeptidase MIS31_04400 PF00149 Calcineurin-like phosphoesterase MIS31_04400 PF10518 TAT (twin-arginine translocation) pathway signal sequence MIS31_04410 PF01521 Iron-sulphur cluster biosynthesis MIS31_04415 PF01592 NifU-like N terminal domain MIS31_04425 PF00266 Aminotransferase class-V MIS31_04430 PF02082 Transcriptional regulator MIS31_04435 PF02664 S-Ribosylhomocysteinase (LuxS) MIS31_04440 PF01048 Phosphorylase superfamily MIS31_04445 PF01381 Helix-turn-helix MIS31_04475 PF00768 D-alanyl-D-alanine carboxypeptidase MIS31_04480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MIS31_04480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MIS31_04480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MIS31_04480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MIS31_04485 PF07687 Peptidase dimerisation domain MIS31_04485 PF01546 Peptidase family M20/M25/M40 MIS31_04490 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MIS31_04490 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MIS31_04495 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MIS31_04495 PF01409 tRNA synthetases class II core domain (F) MIS31_04515 PF03483 B3/4 domain MIS31_04515 PF03484 tRNA synthetase B5 domain MIS31_04515 PF03147 Ferredoxin-fold anticodon binding domain MIS31_04515 PF01588 Putative tRNA binding domain MIS31_04515 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MIS31_04525 PF00501 AMP-binding enzyme MIS31_04525 PF13193 AMP-binding enzyme C-terminal domain MIS31_04530 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_04535 PF01476 LysM domain MIS31_04540 PF01327 Polypeptide deformylase MIS31_04555 PF00436 Single-strand binding protein family MIS31_04560 PF07690 Major Facilitator Superfamily MIS31_04565 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS31_04570 PF00230 Major intrinsic protein MIS31_04585 PF02381 MraZ protein, putative antitoxin-like MIS31_04590 PF01795 MraW methylase family MIS31_04600 PF03717 Penicillin-binding Protein dimerisation domain MIS31_04600 PF00905 Penicillin binding protein transpeptidase domain MIS31_04615 PF01225 Mur ligase family, catalytic domain MIS31_04615 PF02875 Mur ligase family, glutamate ligase domain MIS31_04615 PF08245 Mur ligase middle domain MIS31_04620 PF02463 RecF/RecN/SMC N terminal domain MIS31_04635 PF00884 Sulfatase MIS31_04640 PF01791 DeoC/LacD family aldolase MIS31_04655 PF00294 pfkB family carbohydrate kinase MIS31_04665 PF04198 Putative sugar-binding domain MIS31_04680 PF02875 Mur ligase family, glutamate ligase domain MIS31_04680 PF08245 Mur ligase middle domain MIS31_04680 PF01225 Mur ligase family, catalytic domain MIS31_04685 PF00953 Glycosyl transferase family 4 MIS31_04695 PF06804 NlpB/DapX lipoprotein MIS31_04700 PF00701 Dihydrodipicolinate synthetase family MIS31_04705 PF00210 Ferritin-like domain MIS31_04710 PF00210 Ferritin-like domain MIS31_04715 PF13614 AAA domain MIS31_04720 PF02527 rRNA small subunit methyltransferase G MIS31_04730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MIS31_04735 PF00309 Sigma-54 factor, Activator interacting domain (AID) MIS31_04735 PF04963 Sigma-54 factor, core binding domain MIS31_04735 PF04552 Sigma-54, DNA binding domain MIS31_04740 PF00005 ABC transporter MIS31_04740 PF12399 Branched-chain amino acid ATP-binding cassette transporter MIS31_04765 PF00571 CBS domain MIS31_04765 PF01380 SIS domain MIS31_04770 PF00793 DAHP synthetase I family MIS31_04775 PF03883 Peroxide stress protein YaaA MIS31_04785 PF02397 Bacterial sugar transferase MIS31_04790 PF00535 Glycosyl transferase family 2 MIS31_04805 PF01040 UbiA prenyltransferase family MIS31_04810 PF01501 Glycosyl transferase family 8 MIS31_04810 PF00535 Glycosyl transferase family 2 MIS31_04820 PF01219 Prokaryotic diacylglycerol kinase MIS31_04830 PF00753 Metallo-beta-lactamase superfamily MIS31_04830 PF16123 Hydroxyacylglutathione hydrolase C-terminus MIS31_04835 PF00293 NUDIX domain MIS31_04860 PF01411 tRNA synthetases class II (A) MIS31_04860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MIS31_04860 PF02272 DHHA1 domain MIS31_04870 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_04875 PF00583 Acetyltransferase (GNAT) family MIS31_04885 PF13356 Arm DNA-binding domain MIS31_04885 PF00589 Phage integrase family MIS31_04925 PF00436 Single-strand binding protein family MIS31_04980 PF00574 Clp protease MIS31_05040 PF06791 Prophage tail length tape measure protein MIS31_05065 PF01381 Helix-turn-helix MIS31_05070 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB MIS31_05150 PF02615 Malate/L-lactate dehydrogenase MIS31_05165 PF00162 Phosphoglycerate kinase MIS31_05185 PF13673 Acetyltransferase (GNAT) domain MIS31_05185 PF13302 Acetyltransferase (GNAT) domain MIS31_05185 PF03352 Methyladenine glycosylase MIS31_05185 PF00117 Glutamine amidotransferase class-I MIS31_05185 PF00958 GMP synthase C terminal domain MIS31_05190 PF01638 HxlR-like helix-turn-helix MIS31_05205 PF03466 LysR substrate binding domain MIS31_05205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_05220 PF00296 Luciferase-like monooxygenase MIS31_05225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MIS31_05230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MIS31_05255 PF00881 Nitroreductase family MIS31_05265 PF03466 LysR substrate binding domain MIS31_05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_05270 PF00107 Zinc-binding dehydrogenase MIS31_05270 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_05300 PF03060 Nitronate monooxygenase MIS31_05305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_05305 PF03466 LysR substrate binding domain MIS31_05320 PF02525 Flavodoxin-like fold MIS31_05325 PF01850 PIN domain MIS31_05330 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MIS31_05335 PF00107 Zinc-binding dehydrogenase MIS31_05335 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_05340 PF13173 AAA domain MIS31_05340 PF13635 Domain of unknown function (DUF4143) MIS31_05360 PF00756 Putative esterase MIS31_05365 PF00271 Helicase conserved C-terminal domain MIS31_05365 PF00176 SNF2 family N-terminal domain MIS31_05380 PF18273 Type III R-M EcoP15I C-terminal domain MIS31_05380 PF01555 DNA methylase MIS31_05385 PF00107 Zinc-binding dehydrogenase MIS31_05385 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_05395 PF12706 Beta-lactamase superfamily domain MIS31_05405 PF00881 Nitroreductase family MIS31_05420 PF00270 DEAD/DEAH box helicase MIS31_05420 PF02559 CarD-like/TRCF domain MIS31_05420 PF00271 Helicase conserved C-terminal domain MIS31_05420 PF03461 TRCF domain MIS31_05420 PF17757 UvrB interaction domain MIS31_05425 PF00474 Sodium:solute symporter family MIS31_05435 PF05191 Adenylate kinase, active site lid MIS31_05445 PF01717 Cobalamin-independent synthase, Catalytic domain MIS31_05450 PF01966 HD domain MIS31_05450 PF01743 Poly A polymerase head domain MIS31_05450 PF12627 Probable RNA and SrmB- binding site of polymerase A MIS31_05455 PF12833 Helix-turn-helix domain MIS31_05455 PF01965 DJ-1/PfpI family MIS31_05460 PF10672 S-adenosylmethionine-dependent methyltransferase MIS31_05465 PF01370 NAD dependent epimerase/dehydratase family MIS31_05470 PF04539 Sigma-70 region 3 MIS31_05470 PF04545 Sigma-70, region 4 MIS31_05470 PF00140 Sigma-70 factor, region 1.2 MIS31_05470 PF03979 Sigma-70 factor, region 1.1 MIS31_05470 PF04542 Sigma-70 region 2 MIS31_05470 PF04546 Sigma-70, non-essential region MIS31_05480 PF17864 RuvB AAA lid domain MIS31_05480 PF05491 RuvB C-terminal winged helix domain MIS31_05480 PF05496 Holliday junction DNA helicase RuvB P-loop domain MIS31_05490 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MIS31_05490 PF00326 Prolyl oligopeptidase family MIS31_05505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MIS31_05510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MIS31_05510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MIS31_05515 PF05525 Branched-chain amino acid transport protein MIS31_05520 PF00226 DnaJ domain MIS31_05520 PF07743 HSCB C-terminal oligomerisation domain MIS31_05525 PF00121 Triosephosphate isomerase MIS31_05530 PF03840 Preprotein translocase SecG subunit MIS31_05540 PF00216 Bacterial DNA-binding protein MIS31_05565 PF18273 Type III R-M EcoP15I C-terminal domain MIS31_05565 PF01555 DNA methylase MIS31_05570 PF08774 VRR-NUC domain MIS31_05570 PF04851 Type III restriction enzyme, res subunit MIS31_05600 PF01551 Peptidase family M23 MIS31_05600 PF01476 LysM domain MIS31_05600 PF08525 Opacity-associated protein A N-terminal motif MIS31_05610 PF15864 Protein glycosylation ligase MIS31_05610 PF04932 O-Antigen ligase MIS31_05610 PF11846 Virulence factor membrane-bound polymerase, C-terminal MIS31_05620 PF00291 Pyridoxal-phosphate dependent enzyme MIS31_05630 PF03449 Transcription elongation factor, N-terminal MIS31_05630 PF01272 Transcription elongation factor, GreA/GreB, C-term MIS31_05645 PF02447 GntP family permease MIS31_05650 PF02463 RecF/RecN/SMC N terminal domain MIS31_05650 PF06470 SMC proteins Flexible Hinge Domain MIS31_05655 PF03313 Serine dehydratase alpha chain MIS31_05655 PF03315 Serine dehydratase beta chain MIS31_05665 PF01926 50S ribosome-binding GTPase MIS31_05665 PF16360 GTP-binding GTPase Middle Region MIS31_05665 PF13167 GTP-binding GTPase N-terminal MIS31_05675 PF07690 Major Facilitator Superfamily MIS31_05685 PF18073 Rubredoxin metal binding domain MIS31_05695 PF01416 tRNA pseudouridine synthase MIS31_05715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MIS31_05720 PF01195 Peptidyl-tRNA hydrolase MIS31_05725 PF03658 RnfH family Ubiquitin MIS31_05735 PF01914 MarC family integral membrane protein MIS31_05740 PF01098 Cell cycle protein MIS31_05745 PF00905 Penicillin binding protein transpeptidase domain MIS31_05745 PF03717 Penicillin-binding Protein dimerisation domain MIS31_05750 PF04093 rod shape-determining protein MreD MIS31_05765 PF02686 Glu-tRNAGln amidotransferase C subunit MIS31_05805 PF01425 Amidase MIS31_05815 PF02470 MlaD protein MIS31_05830 PF01281 Ribosomal protein L9, N-terminal domain MIS31_05830 PF03948 Ribosomal protein L9, C-terminal domain MIS31_05835 PF01084 Ribosomal protein S18 MIS31_05845 PF01250 Ribosomal protein S6 MIS31_05850 PF01985 CRS1 / YhbY (CRM) domain MIS31_05855 PF01264 Chorismate synthase MIS31_05865 PF00977 Histidine biosynthesis protein MIS31_05870 PF00117 Glutamine amidotransferase class-I MIS31_05880 PF00390 Malic enzyme, N-terminal domain MIS31_05880 PF01515 Phosphate acetyl/butaryl transferase MIS31_05880 PF03949 Malic enzyme, NAD binding domain MIS31_05885 PF06418 CTP synthase N-terminus MIS31_05885 PF00117 Glutamine amidotransferase class-I MIS31_05895 PF04751 Protein of unknown function (DUF615) MIS31_05900 PF01523 Putative modulator of DNA gyrase MIS31_05910 PF05872 Bacterial protein of unknown function (DUF853) MIS31_05915 PF00892 EamA-like transporter family MIS31_05920 PF00459 Inositol monophosphatase family MIS31_05925 PF03960 ArsC family MIS31_05950 PF00679 Elongation factor G C-terminus MIS31_05950 PF00009 Elongation factor Tu GTP binding domain MIS31_05950 PF03144 Elongation factor Tu domain 2 MIS31_05950 PF06421 GTP-binding protein LepA C-terminus MIS31_05955 PF17854 FtsK alpha domain MIS31_05955 PF09397 Ftsk gamma domain MIS31_05955 PF01580 FtsK/SpoIIIE family MIS31_05960 PF02390 Putative methyltransferase MIS31_05965 PF13230 Glutamine amidotransferases class-II MIS31_05970 PF00156 Phosphoribosyl transferase domain MIS31_05975 PF01694 Rhomboid family MIS31_05980 PF13520 Amino acid permease MIS31_05995 PF01476 LysM domain MIS31_05995 PF01551 Peptidase family M23 MIS31_06000 PF00977 Histidine biosynthesis protein MIS31_06005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_06005 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MIS31_06010 PF01048 Phosphorylase superfamily MIS31_06015 PF02885 Glycosyl transferase family, helical bundle domain MIS31_06015 PF00591 Glycosyl transferase family, a/b domain MIS31_06015 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MIS31_06020 PF07662 Na+ dependent nucleoside transporter C-terminus MIS31_06020 PF07670 Nucleoside recognition MIS31_06020 PF01773 Na+ dependent nucleoside transporter N-terminus MIS31_06025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MIS31_06025 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region MIS31_06030 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) MIS31_06035 PF00270 DEAD/DEAH box helicase MIS31_06035 PF00271 Helicase conserved C-terminal domain MIS31_06040 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MIS31_06045 PF01177 Asp/Glu/Hydantoin racemase MIS31_06050 PF00551 Formyl transferase MIS31_06060 PF04247 Invasion gene expression up-regulator, SirB MIS31_06065 PF00186 Dihydrofolate reductase MIS31_06070 PF02254 TrkA-N domain MIS31_06070 PF00999 Sodium/hydrogen exchanger family MIS31_06075 PF00583 Acetyltransferase (GNAT) family MIS31_06085 PF00710 Asparaginase, N-terminal MIS31_06085 PF17763 Glutaminase/Asparaginase C-terminal domain MIS31_06095 PF00970 Oxidoreductase FAD-binding domain MIS31_06095 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS31_06095 PF00175 Oxidoreductase NAD-binding domain MIS31_06100 PF07690 Major Facilitator Superfamily MIS31_06105 PF00303 Thymidylate synthase MIS31_06110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MIS31_06110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MIS31_06130 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS31_06140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS31_06140 PF04073 Aminoacyl-tRNA editing domain MIS31_06140 PF03129 Anticodon binding domain MIS31_06145 PF00924 Mechanosensitive ion channel MIS31_06145 PF12794 Mechanosensitive ion channel inner membrane domain 1 MIS31_06145 PF12795 Mechanosensitive ion channel porin domain MIS31_06150 PF00293 NUDIX domain MIS31_06155 PF01225 Mur ligase family, catalytic domain MIS31_06155 PF02875 Mur ligase family, glutamate ligase domain MIS31_06155 PF08245 Mur ligase middle domain MIS31_06160 PF07478 D-ala D-ala ligase C-terminus MIS31_06160 PF01820 D-ala D-ala ligase N-terminus MIS31_06165 PF08478 POTRA domain, FtsQ-type MIS31_06165 PF03799 Cell division protein FtsQ MIS31_06170 PF02491 SHS2 domain inserted in FTSA MIS31_06175 PF12327 FtsZ family, C-terminal domain MIS31_06175 PF00091 Tubulin/FtsZ family, GTPase domain MIS31_06185 PF00132 Bacterial transferase hexapeptide (six repeats) MIS31_06185 PF06426 Serine acetyltransferase, N-terminal MIS31_06190 PF01259 SAICAR synthetase MIS31_06195 PF00743 Flavin-binding monooxygenase-like MIS31_06200 PF01027 Inhibitor of apoptosis-promoting Bax1 MIS31_06205 PF00580 UvrD/REP helicase N-terminal domain MIS31_06205 PF13361 UvrD-like helicase C-terminal domain MIS31_06205 PF12705 PD-(D/E)XK nuclease superfamily MIS31_06215 PF01678 Diaminopimelate epimerase MIS31_06225 PF02091 Glycyl-tRNA synthetase alpha subunit MIS31_06235 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_06250 PF00206 Lyase MIS31_06250 PF08328 Adenylosuccinate lyase C-terminal MIS31_06255 PF02607 B12 binding domain MIS31_06255 PF00809 Pterin binding enzyme MIS31_06255 PF02574 Homocysteine S-methyltransferase MIS31_06255 PF02965 Vitamin B12 dependent methionine synthase, activation domain MIS31_06255 PF02310 B12 binding domain MIS31_06265 PF01638 HxlR-like helix-turn-helix MIS31_06270 PF01323 DSBA-like thioredoxin domain MIS31_06280 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS31_06280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MIS31_06285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS31_06290 PF00873 AcrB/AcrD/AcrF family MIS31_06295 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_06300 PF01717 Cobalamin-independent synthase, Catalytic domain MIS31_06305 PF01042 Endoribonuclease L-PSP MIS31_06310 PF00589 Phage integrase family MIS31_06420 PF10548 P22AR C-terminal domain MIS31_06420 PF08346 AntA/AntB antirepressor MIS31_06460 PF07102 Protein of unknown function (DUF1364) MIS31_06625 PF08461 Ribonuclease R winged-helix domain MIS31_06625 PF17876 Cold shock domain MIS31_06625 PF08206 Ribonuclease B OB domain MIS31_06625 PF00773 RNB domain MIS31_06625 PF00575 S1 RNA binding domain MIS31_06630 PF03109 ABC1 family MIS31_06645 PF01168 Alanine racemase, N-terminal domain MIS31_06650 PF01501 Glycosyl transferase family 8 MIS31_06650 PF00535 Glycosyl transferase family 2 MIS31_06655 PF13742 OB-fold nucleic acid binding domain MIS31_06655 PF02601 Exonuclease VII, large subunit MIS31_06670 PF04127 DNA / pantothenate metabolism flavoprotein MIS31_06670 PF02441 Flavoprotein MIS31_06675 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_06695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS31_06700 PF12704 MacB-like periplasmic core domain MIS31_06700 PF00005 ABC transporter MIS31_06700 PF02687 FtsX-like permease family MIS31_06705 PF02321 Outer membrane efflux protein MIS31_06710 PF10502 Signal peptidase, peptidase S26 MIS31_06720 PF05958 tRNA (Uracil-5-)-methyltransferase MIS31_06730 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS31_06760 PF02463 RecF/RecN/SMC N terminal domain MIS31_06770 PF02666 Phosphatidylserine decarboxylase MIS31_06775 PF01292 Prokaryotic cytochrome b561 MIS31_06795 PF00293 NUDIX domain MIS31_06805 PF02578 Multi-copper polyphenol oxidoreductase laccase MIS31_06810 PF06962 Putative rRNA methylase MIS31_06815 PF01926 50S ribosome-binding GTPase MIS31_06815 PF07650 KH domain MIS31_06820 PF10688 Bacterial inner membrane protein MIS31_06830 PF00005 ABC transporter MIS31_06830 PF12848 ABC transporter MIS31_06835 PF01648 4'-phosphopantetheinyl transferase superfamily MIS31_06840 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MIS31_06845 PF04390 Lipopolysaccharide-assembly MIS31_06860 PF02190 ATP-dependent protease La (LON) substrate-binding domain MIS31_06860 PF05362 Lon protease (S16) C-terminal proteolytic domain MIS31_06860 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_06865 PF00216 Bacterial DNA-binding protein MIS31_06870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS31_06875 PF00005 ABC transporter MIS31_06875 PF12848 ABC transporter MIS31_06890 PF00459 Inositol monophosphatase family MIS31_06895 PF04452 RNA methyltransferase MIS31_06900 PF09397 Ftsk gamma domain MIS31_06900 PF01580 FtsK/SpoIIIE family MIS31_06900 PF17854 FtsK alpha domain MIS31_06900 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MIS31_06905 PF13145 PPIC-type PPIASE domain MIS31_06910 PF02569 Pantoate-beta-alanine ligase MIS31_06915 PF00117 Glutamine amidotransferase class-I MIS31_06920 PF01207 Dihydrouridine synthase (Dus) MIS31_06925 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_06930 PF01741 Large-conductance mechanosensitive channel, MscL MIS31_06935 PF13538 UvrD-like helicase C-terminal domain MIS31_06945 PF03477 ATP cone domain MIS31_06945 PF00317 Ribonucleotide reductase, all-alpha domain MIS31_06945 PF02867 Ribonucleotide reductase, barrel domain MIS31_06955 PF01808 AICARFT/IMPCHase bienzyme MIS31_06955 PF02142 MGS-like domain MIS31_06965 PF00892 EamA-like transporter family MIS31_06970 PF02954 Bacterial regulatory protein, Fis family MIS31_06980 PF13525 Outer membrane lipoprotein MIS31_06985 PF00902 Sec-independent protein translocase protein (TatC) MIS31_06990 PF02416 mttA/Hcf106 family MIS31_06995 PF02416 mttA/Hcf106 family MIS31_07005 PF00892 EamA-like transporter family MIS31_07010 PF03129 Anticodon binding domain MIS31_07010 PF04073 Aminoacyl-tRNA editing domain MIS31_07010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS31_07020 PF00462 Glutaredoxin MIS31_07025 PF00579 tRNA synthetases class I (W and Y) MIS31_07030 PF13307 Helicase C-terminal domain MIS31_07030 PF06733 DEAD_2 MIS31_07035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MIS31_07035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MIS31_07040 PF00849 RNA pseudouridylate synthase MIS31_07040 PF01479 S4 domain MIS31_07045 PF01235 Sodium:alanine symporter family MIS31_07050 PF02645 Uncharacterised protein, DegV family COG1307 MIS31_07055 PF01636 Phosphotransferase enzyme family MIS31_07060 PF11992 Domain of unknown function (DUF3488) MIS31_07060 PF13559 Domain of unknown function (DUF4129) MIS31_07060 PF01841 Transglutaminase-like superfamily MIS31_07070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MIS31_07070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MIS31_07070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MIS31_07075 PF01177 Asp/Glu/Hydantoin racemase MIS31_07080 PF02233 NAD(P) transhydrogenase beta subunit MIS31_07090 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MIS31_07090 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MIS31_07095 PF01272 Transcription elongation factor, GreA/GreB, C-term MIS31_07095 PF03449 Transcription elongation factor, N-terminal MIS31_07100 PF07687 Peptidase dimerisation domain MIS31_07100 PF01546 Peptidase family M20/M25/M40 MIS31_07105 PF00268 Ribonucleotide reductase, small chain MIS31_07110 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS31_07125 PF01479 S4 domain MIS31_07125 PF00849 RNA pseudouridylate synthase MIS31_07135 PF02631 RecX family MIS31_07140 PF13419 Haloacid dehalogenase-like hydrolase MIS31_07150 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MIS31_07150 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MIS31_07155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MIS31_07155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MIS31_07160 PF02653 Branched-chain amino acid transport system / permease component MIS31_07165 PF00005 ABC transporter MIS31_07170 PF13407 Periplasmic binding protein domain MIS31_07175 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MIS31_07175 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MIS31_07180 PF10509 Galactokinase galactose-binding signature MIS31_07180 PF08544 GHMP kinases C terminal MIS31_07180 PF00288 GHMP kinases N terminal domain MIS31_07195 PF07715 TonB-dependent Receptor Plug Domain MIS31_07195 PF00593 TonB dependent receptor MIS31_07210 PF02548 Ketopantoate hydroxymethyltransferase MIS31_07215 PF09335 SNARE associated Golgi protein MIS31_07220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MIS31_07220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MIS31_07220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MIS31_07220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MIS31_07230 PF00330 Aconitase family (aconitate hydratase) MIS31_07255 PF00694 Aconitase C-terminal domain MIS31_07270 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MIS31_07270 PF00925 GTP cyclohydrolase II MIS31_07275 PF03618 Kinase/pyrophosphorylase MIS31_07280 PF01501 Glycosyl transferase family 8 MIS31_07285 PF03652 Holliday junction resolvase MIS31_07290 PF02622 Uncharacterized ACR, COG1678 MIS31_07295 PF12848 ABC transporter MIS31_07295 PF16326 ABC transporter C-terminal domain MIS31_07295 PF00005 ABC transporter MIS31_07300 PF02575 YbaB/EbfC DNA-binding family MIS31_07315 PF00731 AIR carboxylase MIS31_07320 PF00762 Ferrochelatase MIS31_07325 PF02547 Queuosine biosynthesis protein MIS31_07335 PF13356 Arm DNA-binding domain MIS31_07335 PF14659 Phage integrase, N-terminal SAM-like domain MIS31_07335 PF00589 Phage integrase family MIS31_07340 PF13356 Arm DNA-binding domain MIS31_07340 PF00589 Phage integrase family MIS31_07385 PF13614 AAA domain MIS31_07390 PF07724 AAA domain (Cdc48 subfamily) MIS31_07390 PF17871 AAA lid domain MIS31_07390 PF10431 C-terminal, D2-small domain, of ClpB protein MIS31_07390 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_07395 PF04717 Type VI secretion system, phage-baseplate injector MIS31_07430 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MIS31_07455 PF00239 Resolvase, N terminal domain MIS31_07455 PF02796 Helix-turn-helix domain of resolvase MIS31_07480 PF00691 OmpA family MIS31_07480 PF05736 OprF membrane domain MIS31_07520 PF04717 Type VI secretion system, phage-baseplate injector MIS31_07540 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA MIS31_07555 PF04445 Putative SAM-dependent methyltransferase MIS31_07565 PF00679 Elongation factor G C-terminus MIS31_07565 PF00009 Elongation factor Tu GTP binding domain MIS31_07565 PF03144 Elongation factor Tu domain 2 MIS31_07570 PF03772 Competence protein MIS31_07570 PF00753 Metallo-beta-lactamase superfamily MIS31_07575 PF00849 RNA pseudouridylate synthase MIS31_07575 PF01479 S4 domain MIS31_07585 PF00591 Glycosyl transferase family, a/b domain MIS31_07585 PF02885 Glycosyl transferase family, helical bundle domain MIS31_07590 PF01171 PP-loop family MIS31_07590 PF09179 TilS substrate binding domain MIS31_07595 PF09157 Pseudouridine synthase II TruB, C-terminal MIS31_07595 PF16198 tRNA pseudouridylate synthase B C-terminal domain MIS31_07595 PF01509 TruB family pseudouridylate synthase (N terminal domain) MIS31_07600 PF12706 Beta-lactamase superfamily domain MIS31_07610 PF00521 DNA gyrase/topoisomerase IV, subunit A MIS31_07615 PF00512 His Kinase A (phospho-acceptor) domain MIS31_07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_07620 PF00072 Response regulator receiver domain MIS31_07620 PF02954 Bacterial regulatory protein, Fis family MIS31_07620 PF00158 Sigma-54 interaction domain MIS31_07625 PF00543 Nitrogen regulatory protein P-II MIS31_07630 PF00588 SpoU rRNA Methylase family MIS31_07635 PF11741 AMIN domain MIS31_07635 PF01520 N-acetylmuramoyl-L-alanine amidase MIS31_07640 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MIS31_07645 PF00881 Nitroreductase family MIS31_07655 PF04399 Glutaredoxin 2, C terminal domain MIS31_07655 PF13417 Glutathione S-transferase, N-terminal domain MIS31_07660 PF14718 Soluble lytic murein transglycosylase L domain MIS31_07660 PF01464 Transglycosylase SLT domain MIS31_07675 PF00437 Type II/IV secretion system protein MIS31_07685 PF00809 Pterin binding enzyme MIS31_07700 PF00589 Phage integrase family MIS31_07785 PF10145 Phage-related minor tail protein MIS31_07785 PF01551 Peptidase family M23 MIS31_07785 PF01464 Transglycosylase SLT domain MIS31_07855 PF17288 Terminase RNAseH like domain MIS31_07855 PF04466 Phage terminase large subunit MIS31_07895 PF08346 AntA/AntB antirepressor MIS31_07895 PF10548 P22AR C-terminal domain MIS31_07990 PF04381 Putative exonuclease, RdgC MIS31_08025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MIS31_08030 PF07715 TonB-dependent Receptor Plug Domain MIS31_08030 PF00593 TonB dependent receptor MIS31_08035 PF17483 C-lobe handle domain of Tf-binding protein B MIS31_08035 PF17484 N-Lobe handle Tf-binding protein B MIS31_08035 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B MIS31_08040 PF04575 Protein of unknown function (DUF560) MIS31_08055 PF02811 PHP domain MIS31_08060 PF01381 Helix-turn-helix MIS31_08065 PF00871 Acetokinase family MIS31_08070 PF03577 Peptidase family C69 MIS31_08080 PF02082 Transcriptional regulator MIS31_08085 PF03900 Porphobilinogen deaminase, C-terminal domain MIS31_08085 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MIS31_08100 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MIS31_08110 PF00849 RNA pseudouridylate synthase MIS31_08110 PF01479 S4 domain MIS31_08120 PF10369 Small subunit of acetolactate synthase MIS31_08125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MIS31_08125 PF00205 Thiamine pyrophosphate enzyme, central domain MIS31_08125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MIS31_08130 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor MIS31_08130 PF07963 Prokaryotic N-terminal methylation motif MIS31_08135 PF07963 Prokaryotic N-terminal methylation motif MIS31_08145 PF05140 ResB-like family MIS31_08150 PF00034 Cytochrome c MIS31_08155 PF01926 50S ribosome-binding GTPase MIS31_08165 PF00579 tRNA synthetases class I (W and Y) MIS31_08170 PF01472 PUA domain MIS31_08170 PF00696 Amino acid kinase family MIS31_08180 PF13393 Histidyl-tRNA synthetase MIS31_08200 PF00709 Adenylosuccinate synthetase MIS31_08205 PF00677 Lumazine binding domain MIS31_08210 PF00171 Aldehyde dehydrogenase family MIS31_08215 PF00005 ABC transporter MIS31_08225 PF01037 Lrp/AsnC ligand binding domain MIS31_08230 PF07724 AAA domain (Cdc48 subfamily) MIS31_08230 PF10431 C-terminal, D2-small domain, of ClpB protein MIS31_08230 PF06689 ClpX C4-type zinc finger MIS31_08235 PF03372 Endonuclease/Exonuclease/phosphatase family MIS31_08245 PF00226 DnaJ domain MIS31_08245 PF01556 DnaJ C terminal domain MIS31_08245 PF00684 DnaJ central domain MIS31_08250 PF00075 RNase H MIS31_08270 PF00585 C-terminal regulatory domain of Threonine dehydratase MIS31_08270 PF00291 Pyridoxal-phosphate dependent enzyme MIS31_08275 PF06039 Malate:quinone oxidoreductase (Mqo) MIS31_08280 PF01926 50S ribosome-binding GTPase MIS31_08290 PF00578 AhpC/TSA family MIS31_08295 PF01384 Phosphate transporter family MIS31_08300 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MIS31_08305 PF03167 Uracil DNA glycosylase superfamily MIS31_08315 PF00005 ABC transporter MIS31_08315 PF12848 ABC transporter MIS31_08330 PF04972 BON domain MIS31_08335 PF13580 SIS domain MIS31_08340 PF02021 Uncharacterised protein family UPF0102 MIS31_08345 PF00814 Glycoprotease family MIS31_08350 PF03956 Lysine exporter LysO MIS31_08360 PF17483 C-lobe handle domain of Tf-binding protein B MIS31_08360 PF17484 N-Lobe handle Tf-binding protein B MIS31_08360 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B MIS31_08370 PF04575 Protein of unknown function (DUF560) MIS31_08375 PF02348 Cytidylyltransferase MIS31_08380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MIS31_08390 PF01479 S4 domain MIS31_08400 PF01138 3' exoribonuclease family, domain 1 MIS31_08400 PF03725 3' exoribonuclease family, domain 2 MIS31_08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS31_08415 PF07549 SecD/SecF GG Motif MIS31_08415 PF02355 Protein export membrane protein MIS31_08420 PF07549 SecD/SecF GG Motif MIS31_08420 PF13721 SecD export protein N-terminal TM region MIS31_08420 PF02355 Protein export membrane protein MIS31_08425 PF02699 Preprotein translocase subunit MIS31_08430 PF01138 3' exoribonuclease family, domain 1 MIS31_08430 PF03725 3' exoribonuclease family, domain 2 MIS31_08430 PF00575 S1 RNA binding domain MIS31_08430 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MIS31_08430 PF00013 KH domain MIS31_08435 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MIS31_08435 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MIS31_08440 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) MIS31_08445 PF04079 Segregation and condensation complex subunit ScpB MIS31_08450 PF05981 CreA protein MIS31_08455 PF01502 Phosphoribosyl-AMP cyclohydrolase MIS31_08460 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MIS31_08465 PF10609 NUBPL iron-transfer P-loop NTPase MIS31_08475 PF02441 Flavoprotein MIS31_08485 PF00551 Formyl transferase MIS31_08485 PF02911 Formyl transferase, C-terminal domain MIS31_08495 PF00294 pfkB family carbohydrate kinase MIS31_08520 PF00698 Acyl transferase domain MIS31_08525 PF01597 Glycine cleavage H-protein MIS31_08530 PF01479 S4 domain MIS31_08530 PF00849 RNA pseudouridylate synthase MIS31_08545 PF03129 Anticodon binding domain MIS31_08545 PF13393 Histidyl-tRNA synthetase MIS31_08550 PF09976 Tetratricopeptide repeat-like domain MIS31_08560 PF01926 50S ribosome-binding GTPase MIS31_08560 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MIS31_08580 PF00156 Phosphoribosyl transferase domain MIS31_08585 PF00035 Double-stranded RNA binding motif MIS31_08585 PF14622 Ribonuclease-III-like MIS31_08600 PF01791 DeoC/LacD family aldolase MIS31_08605 PF00106 short chain dehydrogenase MIS31_08610 PF01593 Flavin containing amine oxidoreductase MIS31_08620 PF00334 Nucleoside diphosphate kinase MIS31_08625 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_08630 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_08635 PF04055 Radical SAM superfamily MIS31_08650 PF04551 GcpE protein MIS31_08660 PF10150 Ribonuclease E/G family MIS31_08660 PF00575 S1 RNA binding domain MIS31_08665 PF01521 Iron-sulphur cluster biosynthesis MIS31_08690 PF00692 dUTPase MIS31_08705 PF02386 Cation transport protein MIS31_08710 PF17831 Pyruvate dehydrogenase E1 component middle domain MIS31_08710 PF00456 Transketolase, thiamine diphosphate binding domain MIS31_08715 PF03891 Domain of unknown function (DUF333) MIS31_08720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MIS31_08720 PF00364 Biotin-requiring enzyme MIS31_08720 PF02817 e3 binding domain MIS31_08725 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS31_08730 PF00849 RNA pseudouridylate synthase MIS31_08735 PF08340 Domain of unknown function (DUF1732) MIS31_08735 PF03755 YicC-like family, N-terminal region MIS31_08750 PF01171 PP-loop family MIS31_08755 PF00324 Amino acid permease MIS31_08760 PF02780 Transketolase, C-terminal domain MIS31_08760 PF02779 Transketolase, pyrimidine binding domain MIS31_08760 PF00456 Transketolase, thiamine diphosphate binding domain MIS31_08765 PF03447 Homoserine dehydrogenase, NAD binding domain MIS31_08765 PF01842 ACT domain MIS31_08765 PF00742 Homoserine dehydrogenase MIS31_08775 PF03060 Nitronate monooxygenase MIS31_08795 PF04076 Bacterial OB fold (BOF) protein MIS31_08800 PF02875 Mur ligase family, glutamate ligase domain MIS31_08800 PF08245 Mur ligase middle domain MIS31_08810 PF02637 GatB domain MIS31_08810 PF02934 GatB/GatE catalytic domain MIS31_08820 PF01523 Putative modulator of DNA gyrase MIS31_08825 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MIS31_08845 PF01433 Peptidase family M1 domain MIS31_08845 PF11940 Domain of unknown function (DUF3458) Ig-like fold MIS31_08845 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MIS31_08855 PF07690 Major Facilitator Superfamily MIS31_08865 PF02675 S-adenosylmethionine decarboxylase MIS31_08895 PF00155 Aminotransferase class I and II MIS31_08900 PF03279 Bacterial lipid A biosynthesis acyltransferase MIS31_08910 PF00218 Indole-3-glycerol phosphate synthase MIS31_08915 PF02698 DUF218 domain MIS31_08925 PF03616 Sodium/glutamate symporter MIS31_08930 PF00180 Isocitrate/isopropylmalate dehydrogenase MIS31_08945 PF00248 Aldo/keto reductase family MIS31_08955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain MIS31_08955 PF01464 Transglycosylase SLT domain MIS31_08960 PF07715 TonB-dependent Receptor Plug Domain MIS31_08960 PF00593 TonB dependent receptor MIS31_08965 PF06472 ABC transporter transmembrane region 2 MIS31_08965 PF00005 ABC transporter MIS31_08970 PF05175 Methyltransferase small domain MIS31_08975 PF02130 Uncharacterized protein family UPF0054 MIS31_08980 PF00571 CBS domain MIS31_08980 PF03471 Transporter associated domain MIS31_08985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MIS31_08985 PF01488 Shikimate / quinate 5-dehydrogenase MIS31_08985 PF08501 Shikimate dehydrogenase substrate binding domain MIS31_08990 PF00912 Transglycosylase MIS31_08995 PF02630 SCO1/SenC MIS31_09000 PF01634 ATP phosphoribosyltransferase MIS31_09010 PF00815 Histidinol dehydrogenase MIS31_09015 PF00266 Aminotransferase class-V MIS31_09035 PF05661 Protein of unknown function (DUF808) MIS31_09045 PF00175 Oxidoreductase NAD-binding domain MIS31_09045 PF00970 Oxidoreductase FAD-binding domain MIS31_09050 PF01728 FtsJ-like methyltransferase MIS31_09055 PF01434 Peptidase family M41 MIS31_09055 PF06480 FtsH Extracellular MIS31_09055 PF17862 AAA+ lid domain MIS31_09055 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_09060 PF01180 Dihydroorotate dehydrogenase MIS31_09080 PF00120 Glutamine synthetase, catalytic domain MIS31_09080 PF03951 Glutamine synthetase, beta-Grasp domain MIS31_09085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MIS31_09090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MIS31_09100 PF01761 3-dehydroquinate synthase MIS31_09105 PF01202 Shikimate kinase MIS31_09110 PF11741 AMIN domain MIS31_09110 PF00263 Bacterial type II and III secretion system protein MIS31_09110 PF03958 Bacterial type II/III secretion system short domain MIS31_09110 PF07660 Secretin and TonB N terminus short domain MIS31_09135 PF00912 Transglycosylase MIS31_09135 PF17092 Penicillin-binding protein OB-like domain MIS31_09135 PF00905 Penicillin binding protein transpeptidase domain MIS31_09160 PF00580 UvrD/REP helicase N-terminal domain MIS31_09160 PF13361 UvrD-like helicase C-terminal domain MIS31_09170 PF00970 Oxidoreductase FAD-binding domain MIS31_09170 PF00175 Oxidoreductase NAD-binding domain MIS31_09175 PF02769 AIR synthase related protein, C-terminal domain MIS31_09175 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MIS31_09175 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MIS31_09185 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_09190 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_09190 PF00107 Zinc-binding dehydrogenase MIS31_09200 PF00149 Calcineurin-like phosphoesterase MIS31_09220 PF00155 Aminotransferase class I and II MIS31_09225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MIS31_09225 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS31_09230 PF01040 UbiA prenyltransferase family MIS31_09235 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MIS31_09235 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MIS31_09240 PF01026 TatD related DNase MIS31_09245 PF10576 Iron-sulfur binding domain of endonuclease III MIS31_09245 PF00633 Helix-hairpin-helix motif MIS31_09245 PF00730 HhH-GPD superfamily base excision DNA repair protein MIS31_09245 PF14815 NUDIX domain MIS31_09250 PF00834 Ribulose-phosphate 3 epimerase family MIS31_09255 PF00625 Guanylate kinase MIS31_09260 PF01192 RNA polymerase Rpb6 MIS31_09265 PF02824 TGS domain MIS31_09265 PF04607 Region found in RelA / SpoT proteins MIS31_09265 PF13291 ACT domain MIS31_09270 PF00561 alpha/beta hydrolase fold MIS31_09280 PF07021 Methionine biosynthesis protein MetW MIS31_09280 PF00561 alpha/beta hydrolase fold MIS31_09285 PF03601 Conserved hypothetical protein 698 MIS31_09295 PF02659 Putative manganese efflux pump MIS31_09300 PF07085 DRTGG domain MIS31_09300 PF01515 Phosphate acetyl/butaryl transferase MIS31_09315 PF13488 Glycine zipper MIS31_09315 PF00691 OmpA family MIS31_09320 PF07690 Major Facilitator Superfamily MIS31_09325 PF00578 AhpC/TSA family MIS31_09330 PF01725 Ham1 family MIS31_09335 PF00664 ABC transporter transmembrane region MIS31_09335 PF00005 ABC transporter MIS31_09335 PF03412 Peptidase C39 family MIS31_09340 PF02872 5'-nucleotidase, C-terminal domain MIS31_09340 PF00149 Calcineurin-like phosphoesterase MIS31_09345 PF08278 DNA primase DnaG DnaB-binding MIS31_09345 PF08275 DNA primase catalytic core, N-terminal domain MIS31_09345 PF01807 CHC2 zinc finger MIS31_09345 PF10410 DnaB-helicase binding domain of primase MIS31_09350 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_09360 PF05175 Methyltransferase small domain MIS31_09370 PF02875 Mur ligase family, glutamate ligase domain MIS31_09370 PF08245 Mur ligase middle domain MIS31_09385 PF00156 Phosphoribosyl transferase domain MIS31_09390 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MIS31_09390 PF02779 Transketolase, pyrimidine binding domain MIS31_09390 PF02780 Transketolase, C-terminal domain MIS31_09395 PF07726 ATPase family associated with various cellular activities (AAA) MIS31_09395 PF17863 AAA lid domain MIS31_09400 PF00291 Pyridoxal-phosphate dependent enzyme MIS31_09415 PF01207 Dihydrouridine synthase (Dus) MIS31_09420 PF02719 Polysaccharide biosynthesis protein MIS31_09430 PF02769 AIR synthase related protein, C-terminal domain MIS31_09430 PF00586 AIR synthase related protein, N-terminal domain MIS31_09435 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) MIS31_09440 PF00403 Heavy-metal-associated domain MIS31_09445 PF00403 Heavy-metal-associated domain MIS31_09450 PF12806 Acetyl-CoA dehydrogenase C-terminal like MIS31_09450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MIS31_09450 PF02770 Acyl-CoA dehydrogenase, middle domain MIS31_09450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MIS31_09455 PF12805 FUSC-like inner membrane protein yccS MIS31_09460 PF01817 Chorismate mutase type II MIS31_09460 PF01842 ACT domain MIS31_09460 PF00800 Prephenate dehydratase MIS31_09465 PF17676 LD-carboxypeptidase C-terminal domain MIS31_09465 PF02016 LD-carboxypeptidase N-terminal domain MIS31_09520 PF01435 Peptidase family M48 MIS31_09530 PF00472 RF-1 domain MIS31_09530 PF03462 PCRF domain MIS31_09545 PF01850 PIN domain MIS31_09555 PF18073 Rubredoxin metal binding domain MIS31_09565 PF01063 Amino-transferase class IV MIS31_09575 PF01609 Transposase DDE domain MIS31_09590 PF01029 NusB family MIS31_09590 PF01189 16S rRNA methyltransferase RsmB/F MIS31_09595 PF04055 Radical SAM superfamily MIS31_09595 PF06969 HemN C-terminal domain MIS31_09600 PF13545 Crp-like helix-turn-helix domain MIS31_09600 PF00027 Cyclic nucleotide-binding domain MIS31_09605 PF00486 Transcriptional regulatory protein, C terminal MIS31_09605 PF00072 Response regulator receiver domain MIS31_09610 PF00672 HAMP domain MIS31_09610 PF00512 His Kinase A (phospho-acceptor) domain MIS31_09610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_09610 PF16750 Sensor domain of 2-component histidine kinase MIS31_09615 PF16363 GDP-mannose 4,6 dehydratase MIS31_09620 PF07690 Major Facilitator Superfamily MIS31_09630 PF03193 RsgA GTPase MIS31_09640 PF13439 Glycosyltransferase Family 4 MIS31_09640 PF00534 Glycosyl transferases group 1 MIS31_09650 PF03222 Tryptophan/tyrosine permease family MIS31_09655 PF01467 Cytidylyltransferase-like MIS31_09670 PF13302 Acetyltransferase (GNAT) domain MIS31_09675 PF00294 pfkB family carbohydrate kinase MIS31_09680 PF00132 Bacterial transferase hexapeptide (six repeats) MIS31_09695 PF06071 Protein of unknown function (DUF933) MIS31_09695 PF01926 50S ribosome-binding GTPase MIS31_09705 PF03807 NADP oxidoreductase coenzyme F420-dependent MIS31_09705 PF14748 Pyrroline-5-carboxylate reductase dimerisation MIS31_09710 PF01979 Amidohydrolase family MIS31_09715 PF00817 impB/mucB/samB family MIS31_09715 PF11799 impB/mucB/samB family C-terminal domain MIS31_09715 PF11798 IMS family HHH motif MIS31_09720 PF04384 Iron-sulphur cluster assembly MIS31_09725 PF01256 Carbohydrate kinase MIS31_09730 PF01553 Acyltransferase MIS31_09740 PF01266 FAD dependent oxidoreductase MIS31_09740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MIS31_09755 PF07475 HPr Serine kinase C-terminal domain MIS31_09755 PF02603 HPr Serine kinase N terminus MIS31_09760 PF03668 P-loop ATPase protein family MIS31_09765 PF08335 GlnD PII-uridylyltransferase MIS31_09765 PF01966 HD domain MIS31_09770 PF00529 HlyD membrane-fusion protein of T1SS MIS31_09770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS31_09780 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MIS31_09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS31_09785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MIS31_09790 PF00462 Glutaredoxin MIS31_09790 PF08534 Redoxin MIS31_09805 PF00313 'Cold-shock' DNA-binding domain MIS31_09810 PF02617 ATP-dependent Clp protease adaptor protein ClpS MIS31_09815 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_09815 PF07724 AAA domain (Cdc48 subfamily) MIS31_09815 PF17871 AAA lid domain MIS31_09815 PF02861 Clp amino terminal domain, pathogenicity island component MIS31_09815 PF10431 C-terminal, D2-small domain, of ClpB protein MIS31_09820 PF01565 FAD binding domain MIS31_09820 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MIS31_09825 PF01300 Telomere recombination MIS31_09830 PF02464 Competence-damaged protein MIS31_09835 PF07072 Cell division protein MIS31_09840 PF01121 Dephospho-CoA kinase MIS31_09845 PF06750 Bacterial Peptidase A24 N-terminal domain MIS31_09845 PF01478 Type IV leader peptidase family MIS31_09850 PF00482 Type II secretion system (T2SS), protein F MIS31_09855 PF00437 Type II/IV secretion system protein MIS31_09855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MIS31_09865 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MIS31_09870 PF04305 Protein of unknown function (DUF455) MIS31_09875 PF03548 Outer membrane lipoprotein carrier protein LolA MIS31_09880 PF03702 Anhydro-N-acetylmuramic acid kinase MIS31_09885 PF02033 Ribosome-binding factor A MIS31_09890 PF00085 Thioredoxin MIS31_09895 PF12169 DNA polymerase III subunits gamma and tau domain III MIS31_09895 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MIS31_09895 PF12170 DNA polymerase III tau subunit V interacting with alpha MIS31_09900 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) MIS31_09920 PF01435 Peptidase family M48 MIS31_09925 PF11412 Disulphide bond corrector protein DsbC MIS31_09925 PF02683 Cytochrome C biogenesis protein transmembrane region MIS31_09925 PF00085 Thioredoxin MIS31_09930 PF00005 ABC transporter MIS31_09935 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_09940 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_09945 PF02503 Polyphosphate kinase middle domain MIS31_09945 PF13090 Polyphosphate kinase C-terminal domain 2 MIS31_09945 PF17941 Polyphosphate kinase C-terminal domain 1 MIS31_09945 PF13089 Polyphosphate kinase N-terminal domain MIS31_09950 PF00881 Nitroreductase family MIS31_09955 PF13419 Haloacid dehalogenase-like hydrolase MIS31_09965 PF01513 ATP-NAD kinase MIS31_09980 PF13409 Glutathione S-transferase, N-terminal domain MIS31_10000 PF00986 DNA gyrase B subunit, carboxyl terminus MIS31_10000 PF18053 DNA gyrase B subunit insert domain MIS31_10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_10000 PF01751 Toprim domain MIS31_10000 PF00204 DNA gyrase B MIS31_10015 PF00005 ABC transporter MIS31_10020 PF01790 Prolipoprotein diacylglyceryl transferase MIS31_10025 PF04055 Radical SAM superfamily MIS31_10025 PF01938 TRAM domain MIS31_10025 PF00919 Uncharacterized protein family UPF0004 MIS31_10035 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS31_10065 PF05167 Uncharacterised ACR (DUF711) MIS31_10075 PF01565 FAD binding domain MIS31_10075 PF09330 D-lactate dehydrogenase, membrane binding MIS31_10085 PF13091 PLD-like domain MIS31_10095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MIS31_10105 PF01842 ACT domain MIS31_10105 PF13840 ACT domain MIS31_10105 PF00696 Amino acid kinase family MIS31_10110 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MIS31_10110 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MIS31_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_10115 PF03466 LysR substrate binding domain MIS31_10120 PF03631 Virulence factor BrkB MIS31_10125 PF01467 Cytidylyltransferase-like MIS31_10130 PF11067 Protein of unknown function (DUF2868) MIS31_10150 PF01491 Frataxin-like domain MIS31_10165 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MIS31_10165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MIS31_10170 PF00437 Type II/IV secretion system protein MIS31_10175 PF00437 Type II/IV secretion system protein MIS31_10180 PF12111 Polyribonucleotide phosphorylase C terminal MIS31_10180 PF00575 S1 RNA binding domain MIS31_10180 PF10150 Ribonuclease E/G family MIS31_10185 PF01479 S4 domain MIS31_10185 PF00849 RNA pseudouridylate synthase MIS31_10220 PF13180 PDZ domain MIS31_10230 PF04359 Protein of unknown function (DUF493) MIS31_10235 PF03099 Biotin/lipoate A/B protein ligase family MIS31_10240 PF00106 short chain dehydrogenase MIS31_10245 PF17375 Family of unknown function (DUF5397) MIS31_10255 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MIS31_10255 PF04055 Radical SAM superfamily MIS31_10260 PF12564 Type III restriction/modification enzyme methylation subunit MIS31_10265 PF01555 DNA methylase MIS31_10275 PF03806 AbgT putative transporter family MIS31_10280 PF00814 Glycoprotease family MIS31_10285 PF01207 Dihydrouridine synthase (Dus) MIS31_10290 PF00589 Phage integrase family MIS31_10330 PF00436 Single-strand binding protein family MIS31_10350 PF06630 Enterobacterial exodeoxyribonuclease VIII MIS31_10350 PF12684 PDDEXK-like domain of unknown function (DUF3799) MIS31_10475 PF08346 AntA/AntB antirepressor MIS31_10475 PF10548 P22AR C-terminal domain MIS31_10485 PF01695 IstB-like ATP binding protein MIS31_10525 PF01555 DNA methylase MIS31_10525 PF18755 Restriction Enzyme Adenine Methylase Associated MIS31_10530 PF07102 Protein of unknown function (DUF1364) MIS31_10550 PF04466 Phage terminase large subunit MIS31_10550 PF17288 Terminase RNAseH like domain MIS31_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_10605 PF03466 LysR substrate binding domain MIS31_10610 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_10615 PF13416 Bacterial extracellular solute-binding protein MIS31_10625 PF03775 Septum formation inhibitor MinC, C-terminal domain MIS31_10625 PF05209 Septum formation inhibitor MinC, N-terminal domain MIS31_10630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MIS31_10635 PF03776 Septum formation topological specificity factor MinE MIS31_10640 PF03466 LysR substrate binding domain MIS31_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_10650 PF00308 Bacterial dnaA protein MIS31_10655 PF02682 Carboxyltransferase domain, subdomain C and D MIS31_10660 PF02626 Carboxyltransferase domain, subdomain A and B MIS31_10665 PF03746 LamB/YcsF family MIS31_10685 PF01566 Natural resistance-associated macrophage protein MIS31_10690 PF05746 DALR anticodon binding domain MIS31_10690 PF02092 Glycyl-tRNA synthetase beta subunit MIS31_10715 PF07922 Glycosyltransferase family 52 MIS31_10720 PF01943 Polysaccharide biosynthesis protein MIS31_10730 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS31_10730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MIS31_10735 PF09285 Elongation factor P, C-terminal MIS31_10735 PF01132 Elongation factor P (EF-P) OB domain MIS31_10735 PF08207 Elongation factor P (EF-P) KOW-like domain MIS31_10800 PF13726 Na+-H+ antiporter family MIS31_10800 PF03553 Na+/H+ antiporter family MIS31_10815 PF03458 UPF0126 domain MIS31_10820 PF00005 ABC transporter MIS31_10820 PF02687 FtsX-like permease family MIS31_10820 PF12704 MacB-like periplasmic core domain MIS31_10825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS31_10850 PF00290 Tryptophan synthase alpha chain MIS31_10855 PF00375 Sodium:dicarboxylate symporter family MIS31_10865 PF04102 SlyX MIS31_10870 PF00293 NUDIX domain MIS31_10890 PF00009 Elongation factor Tu GTP binding domain MIS31_10890 PF11987 Translation-initiation factor 2 MIS31_10890 PF04760 Translation initiation factor IF-2, N-terminal region MIS31_10895 PF13184 NusA-like KH domain MIS31_10895 PF08529 NusA N-terminal domain MIS31_10900 PF17384 RimP C-terminal SH3 domain MIS31_10900 PF02576 RimP N-terminal domain MIS31_10910 PF00085 Thioredoxin MIS31_10915 PF13395 HNH endonuclease MIS31_10915 PF18541 RuvC endonuclease subdomain 3 MIS31_10920 PF01867 CRISPR associated protein Cas1 MIS31_10925 PF09827 CRISPR associated protein Cas2 MIS31_10930 PF17755 UvrA DNA-binding domain MIS31_10930 PF17760 UvrA interaction domain MIS31_10950 PF00472 RF-1 domain MIS31_10950 PF03462 PCRF domain MIS31_10955 PF04263 Thiamin pyrophosphokinase, catalytic domain MIS31_10955 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain MIS31_10965 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MIS31_10975 PF01475 Ferric uptake regulator family MIS31_10980 PF04355 SmpA / OmlA family MIS31_10985 PF01113 Dihydrodipicolinate reductase, N-terminus MIS31_10985 PF05173 Dihydrodipicolinate reductase, C-terminus MIS31_10990 PF01066 CDP-alcohol phosphatidyltransferase MIS31_10995 PF01268 Formate--tetrahydrofolate ligase MIS31_11005 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MIS31_11015 PF07732 Multicopper oxidase MIS31_11020 PF00115 Cytochrome C and Quinol oxidase polypeptide I MIS31_11035 PF07724 AAA domain (Cdc48 subfamily) MIS31_11035 PF17871 AAA lid domain MIS31_11035 PF10431 C-terminal, D2-small domain, of ClpB protein MIS31_11035 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_11040 PF04717 Type VI secretion system, phage-baseplate injector MIS31_11110 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MIS31_11135 PF02796 Helix-turn-helix domain of resolvase MIS31_11135 PF00239 Resolvase, N terminal domain MIS31_11160 PF05736 OprF membrane domain MIS31_11160 PF00691 OmpA family MIS31_11195 PF04717 Type VI secretion system, phage-baseplate injector MIS31_11210 PF04717 Type VI secretion system, phage-baseplate injector MIS31_11265 PF00403 Heavy-metal-associated domain MIS31_11270 PF01613 Flavin reductase like domain MIS31_11275 PF08946 Osmosensory transporter coiled coil MIS31_11275 PF00083 Sugar (and other) transporter MIS31_11285 PF02633 Creatinine amidohydrolase MIS31_11290 PF00892 EamA-like transporter family MIS31_11300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS31_11300 PF01751 Toprim domain MIS31_11300 PF00986 DNA gyrase B subunit, carboxyl terminus MIS31_11300 PF00204 DNA gyrase B MIS31_11320 PF01554 MatE MIS31_11330 PF06508 Queuosine biosynthesis protein QueC MIS31_11335 PF07690 Major Facilitator Superfamily MIS31_11340 PF00860 Permease family MIS31_11345 PF02566 OsmC-like protein MIS31_11355 PF01145 SPFH domain / Band 7 family MIS31_11355 PF16200 C-terminal region of band_7 MIS31_11360 PF02798 Glutathione S-transferase, N-terminal domain MIS31_11360 PF00043 Glutathione S-transferase, C-terminal domain MIS31_11365 PF04386 Stringent starvation protein B MIS31_11375 PF05164 Cell division protein ZapA MIS31_11385 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MIS31_11385 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MIS31_11400 PF02618 YceG-like family MIS31_11405 PF01197 Ribosomal protein L31 MIS31_11410 PF00444 Ribosomal protein L36 MIS31_11420 PF04261 Dyp-type peroxidase family MIS31_11425 PF01553 Acyltransferase MIS31_11440 PF04002 RadC-like JAB domain MIS31_11445 PF00005 ABC transporter MIS31_11465 PF01032 FecCD transport family MIS31_11480 PF00490 Delta-aminolevulinic acid dehydratase MIS31_11505 PF00883 Cytosol aminopeptidase family, catalytic domain MIS31_11515 PF05175 Methyltransferase small domain MIS31_11515 PF17827 PrmC N-terminal domain MIS31_11530 PF02348 Cytidylyltransferase MIS31_11535 PF03966 Trm112p-like protein MIS31_11550 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MIS31_11555 PF00483 Nucleotidyl transferase MIS31_11565 PF00899 ThiF family MIS31_11570 PF00582 Universal stress protein family MIS31_11575 PF00753 Metallo-beta-lactamase superfamily MIS31_11580 PF02153 Prephenate dehydrogenase MIS31_11580 PF01842 ACT domain MIS31_11590 PF01047 MarR family MIS31_11595 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_11600 PF06574 FAD synthetase MIS31_11600 PF01687 Riboflavin kinase MIS31_11605 PF00005 ABC transporter MIS31_11610 PF01047 MarR family MIS31_11615 PF00210 Ferritin-like domain MIS31_11620 PF02566 OsmC-like protein MIS31_11630 PF01032 FecCD transport family MIS31_11640 PF13635 Domain of unknown function (DUF4143) MIS31_11640 PF13173 AAA domain MIS31_11650 PF01032 FecCD transport family MIS31_11660 PF01497 Periplasmic binding protein MIS31_11675 PF00154 recA bacterial DNA recombination protein MIS31_11680 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_11680 PF00107 Zinc-binding dehydrogenase MIS31_11685 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MIS31_11685 PF01872 RibD C-terminal domain MIS31_11690 PF00425 chorismate binding enzyme MIS31_11690 PF04715 Anthranilate synthase component I, N terminal region MIS31_11700 PF02545 Maf-like protein MIS31_11715 PF02616 Segregation and condensation protein ScpA MIS31_11725 PF14602 Hexapeptide repeat of succinyl-transferase MIS31_11725 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MIS31_11735 PF13406 Transglycosylase SLT domain MIS31_11740 PF02810 SEC-C motif MIS31_11745 PF01118 Semialdehyde dehydrogenase, NAD binding domain MIS31_11745 PF02774 Semialdehyde dehydrogenase, dimerisation domain MIS31_11755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MIS31_11765 PF00133 tRNA synthetases class I (I, L, M and V) MIS31_11765 PF13603 Leucyl-tRNA synthetase, Domain 2 MIS31_11765 PF09334 tRNA synthetases class I (M) MIS31_11765 PF08264 Anticodon-binding domain of tRNA MIS31_11770 PF01322 Cytochrome C' MIS31_11775 PF00106 short chain dehydrogenase MIS31_11785 PF01578 Cytochrome C assembly protein MIS31_11795 PF00005 ABC transporter MIS31_11795 PF09383 NIL domain MIS31_11800 PF00528 Binding-protein-dependent transport system inner membrane component MIS31_11805 PF03180 NLPA lipoprotein MIS31_11810 PF02678 Pirin MIS31_11810 PF05726 Pirin C-terminal cupin domain MIS31_11815 PF00795 Carbon-nitrogen hydrolase MIS31_11820 PF02540 NAD synthase MIS31_11830 PF00679 Elongation factor G C-terminus MIS31_11830 PF14492 Elongation Factor G, domain II MIS31_11830 PF03764 Elongation factor G, domain IV MIS31_11830 PF00009 Elongation factor Tu GTP binding domain MIS31_11830 PF03144 Elongation factor Tu domain 2 MIS31_11835 PF00177 Ribosomal protein S7p/S5e MIS31_11840 PF00164 Ribosomal protein S12/S23 MIS31_11850 PF00580 UvrD/REP helicase N-terminal domain MIS31_11850 PF13361 UvrD-like helicase C-terminal domain MIS31_11855 PF04324 BFD-like [2Fe-2S] binding domain MIS31_11865 PF01255 Putative undecaprenyl diphosphate synthase MIS31_11875 PF09335 SNARE associated Golgi protein MIS31_11880 PF00675 Insulinase (Peptidase family M16) MIS31_11880 PF05193 Peptidase M16 inactive domain MIS31_11885 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_11890 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_11895 PF00199 Catalase MIS31_11895 PF06628 Catalase-related immune-responsive MIS31_11900 PF01066 CDP-alcohol phosphatidyltransferase MIS31_11905 PF01209 ubiE/COQ5 methyltransferase family MIS31_11935 PF06965 Na+/H+ antiporter 1 MIS31_11935 PF01343 Peptidase family S49 MIS31_11950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS31_11950 PF03466 LysR substrate binding domain MIS31_11955 PF01255 Putative undecaprenyl diphosphate synthase MIS31_11960 PF03023 Lipid II flippase MurJ MIS31_11965 PF04361 Protein of unknown function (DUF494) MIS31_11975 PF01131 DNA topoisomerase MIS31_11975 PF01751 Toprim domain MIS31_11975 PF13368 Topoisomerase C-terminal repeat MIS31_11995 PF05992 SbmA/BacA-like family MIS31_12000 PF04715 Anthranilate synthase component I, N terminal region MIS31_12000 PF00425 chorismate binding enzyme MIS31_12040 PF00574 Clp protease MIS31_12045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS31_12045 PF05697 Bacterial trigger factor protein (TF) MIS31_12045 PF05698 Bacterial trigger factor protein (TF) C-terminus MIS31_12050 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MIS31_12055 PF18027 Cytosolic carboxypeptidase N-terminal domain MIS31_12055 PF00246 Zinc carboxypeptidase MIS31_12060 PF13533 Biotin-lipoyl like MIS31_12065 PF08240 Alcohol dehydrogenase GroES-like domain MIS31_12065 PF00107 Zinc-binding dehydrogenase MIS31_12075 PF02590 Predicted SPOUT methyltransferase MIS31_12080 PF00691 OmpA family MIS31_12085 PF00462 Glutaredoxin MIS31_12090 PF02556 Preprotein translocase subunit SecB MIS31_12095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MIS31_12100 PF00929 Exonuclease MIS31_12125 PF02861 Clp amino terminal domain, pathogenicity island component MIS31_12125 PF10431 C-terminal, D2-small domain, of ClpB protein MIS31_12125 PF00004 ATPase family associated with various cellular activities (AAA) MIS31_12125 PF07724 AAA domain (Cdc48 subfamily) MIS31_12125 PF17871 AAA lid domain MIS31_12140 PF01765 Ribosome recycling factor MIS31_12145 PF00155 Aminotransferase class I and II MIS31_12165 PF02913 FAD linked oxidases, C-terminal domain MIS31_12165 PF01565 FAD binding domain MIS31_12185 PF00929 Exonuclease MIS31_12190 PF01467 Cytidylyltransferase-like MIS31_12195 PF00484 Carbonic anhydrase MIS31_12200 PF01297 Zinc-uptake complex component A periplasmic MIS31_12205 PF00005 ABC transporter MIS31_12220 PF10531 SLBB domain MIS31_12225 PF00380 Ribosomal protein S9/S16 MIS31_12230 PF00572 Ribosomal protein L13 MIS31_12235 PF00860 Permease family MIS31_12240 PF02222 ATP-grasp domain MIS31_12240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MIS31_12275 PF02896 PEP-utilising enzyme, TIM barrel domain MIS31_12275 PF05524 PEP-utilising enzyme, N-terminal MIS31_12275 PF00391 PEP-utilising enzyme, mobile domain MIS31_12280 PF00381 PTS HPr component phosphorylation site MIS31_12285 PF07690 Major Facilitator Superfamily MIS31_12305 PF01406 tRNA synthetases class I (C) catalytic domain MIS31_12305 PF09190 DALR domain MIS31_12310 PF00117 Glutamine amidotransferase class-I MIS31_12310 PF02540 NAD synthase MIS31_12310 PF00958 GMP synthase C terminal domain MIS31_12315 PF01235 Sodium:alanine symporter family MIS31_12320 PF04362 Bacterial Fe(2+) trafficking MIS31_12325 PF00550 Phosphopantetheine attachment site MIS31_12330 PF00109 Beta-ketoacyl synthase, N-terminal domain MIS31_12330 PF02801 Beta-ketoacyl synthase, C-terminal domain MIS31_12335 PF00224 Pyruvate kinase, barrel domain MIS31_12335 PF02887 Pyruvate kinase, alpha/beta domain MIS31_12345 PF08402 TOBE domain MIS31_12345 PF00005 ABC transporter MIS31_12350 PF00448 SRP54-type protein, GTPase domain MIS31_12350 PF02881 SRP54-type protein, helical bundle domain MIS31_12360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MIS31_12365 PF00782 Dual specificity phosphatase, catalytic domain MIS31_12370 PF00730 HhH-GPD superfamily base excision DNA repair protein MIS31_12370 PF10576 Iron-sulfur binding domain of endonuclease III MIS31_12370 PF00633 Helix-hairpin-helix motif MIS31_12375 PF01165 Ribosomal protein S21 MIS31_12380 PF09424 Yqey-like protein MIS31_12385 PF00012 Hsp70 protein MIS31_12395 PF01225 Mur ligase family, catalytic domain MIS31_12395 PF02875 Mur ligase family, glutamate ligase domain MIS31_12395 PF08245 Mur ligase middle domain MIS31_12400 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS31_12410 PF02592 Putative vitamin uptake transporter MIS31_12415 PF14489 QueF-like protein MIS31_12420 PF01018 GTP1/OBG MIS31_12420 PF01926 50S ribosome-binding GTPase MIS31_12430 PF04608 Phosphatidylglycerophosphatase A MIS31_12435 PF05958 tRNA (Uracil-5-)-methyltransferase MIS31_12450 PF03169 OPT oligopeptide transporter protein MIS31_12455 PF06940 Domain of unknown function (DUF1287) MIS31_12490 PF01212 Beta-eliminating lyase MIS31_12505 PF09186 Domain of unknown function (DUF1949) MIS31_12505 PF01205 Uncharacterized protein family UPF0029 MIS31_12535 PF02096 60Kd inner membrane protein MIS31_12535 PF14849 YidC periplasmic domain MIS31_12540 PF01809 Putative membrane protein insertion efficiency factor MIS31_12545 PF00825 Ribonuclease P MIS31_12550 PF00468 Ribosomal protein L34