locus-tag class description MIS44_00005 PF00308 Bacterial dnaA protein MIS44_00005 PF08299 Bacterial dnaA protein helix-turn-helix MIS44_00005 PF11638 DnaA N-terminal domain MIS44_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MIS44_00010 PF02767 DNA polymerase III beta subunit, central domain MIS44_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MIS44_00025 PF01548 Transposase MIS44_00025 PF02371 Transposase IS116/IS110/IS902 family MIS44_00035 PF02401 LytB protein MIS44_00050 PF01252 Signal peptidase (SPase) II MIS44_00055 PF01197 Ribosomal protein L31 MIS44_00065 PF12627 Probable RNA and SrmB- binding site of polymerase A MIS44_00065 PF01743 Poly A polymerase head domain MIS44_00065 PF12626 Polymerase A arginine-rich C-terminus MIS44_00075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS44_00080 PF02666 Phosphatidylserine decarboxylase MIS44_00090 PF01925 Sulfite exporter TauE/SafE MIS44_00095 PF05159 Capsule polysaccharide biosynthesis protein MIS44_00100 PF05159 Capsule polysaccharide biosynthesis protein MIS44_00115 PF00857 Isochorismatase family MIS44_00120 PF00892 EamA-like transporter family MIS44_00130 PF01134 Glucose inhibited division protein A MIS44_00130 PF13932 GidA associated domain MIS44_00150 PF01226 Formate/nitrite transporter MIS44_00160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MIS44_00160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MIS44_00165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS44_00175 PF01196 Ribosomal protein L17 MIS44_00180 PF01000 RNA polymerase Rpb3/RpoA insert domain MIS44_00180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MIS44_00180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MIS44_00185 PF01479 S4 domain MIS44_00185 PF00163 Ribosomal protein S4/S9 N-terminal domain MIS44_00190 PF00411 Ribosomal protein S11 MIS44_00195 PF00416 Ribosomal protein S13/S18 MIS44_00200 PF00444 Ribosomal protein L36 MIS44_00205 PF01176 Translation initiation factor 1A / IF-1 MIS44_00210 PF00344 SecY translocase MIS44_00215 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MIS44_00220 PF00327 Ribosomal protein L30p/L7e MIS44_00225 PF03719 Ribosomal protein S5, C-terminal domain MIS44_00225 PF00333 Ribosomal protein S5, N-terminal domain MIS44_00230 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MIS44_00235 PF00347 Ribosomal protein L6 MIS44_00240 PF00410 Ribosomal protein S8 MIS44_00245 PF00253 Ribosomal protein S14p/S29e MIS44_00250 PF00673 ribosomal L5P family C-terminus MIS44_00250 PF00281 Ribosomal protein L5 MIS44_00255 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MIS44_00255 PF00467 KOW motif MIS44_00260 PF00238 Ribosomal protein L14p/L23e MIS44_00265 PF01168 Alanine racemase, N-terminal domain MIS44_00265 PF00842 Alanine racemase, C-terminal domain MIS44_00270 PF07687 Peptidase dimerisation domain MIS44_00270 PF01546 Peptidase family M20/M25/M40 MIS44_00280 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MIS44_00280 PF01243 Pyridoxamine 5'-phosphate oxidase MIS44_00285 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MIS44_00285 PF01488 Shikimate / quinate 5-dehydrogenase MIS44_00285 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MIS44_00290 PF00366 Ribosomal protein S17 MIS44_00295 PF00831 Ribosomal L29 protein MIS44_00300 PF00252 Ribosomal protein L16p/L10e MIS44_00305 PF00189 Ribosomal protein S3, C-terminal domain MIS44_00305 PF07650 KH domain MIS44_00310 PF00237 Ribosomal protein L22p/L17e MIS44_00315 PF00203 Ribosomal protein S19 MIS44_00320 PF03947 Ribosomal Proteins L2, C-terminal domain MIS44_00320 PF00181 Ribosomal Proteins L2, RNA binding domain MIS44_00325 PF00276 Ribosomal protein L23 MIS44_00330 PF00573 Ribosomal protein L4/L1 family MIS44_00335 PF00297 Ribosomal protein L3 MIS44_00345 PF01494 FAD binding domain MIS44_00350 PF01810 LysE type translocator MIS44_00365 PF03884 DNA gyrase inhibitor YacG MIS44_00370 PF01351 Ribonuclease HII MIS44_00380 PF02151 UvrB/uvrC motif MIS44_00380 PF08459 UvrC Helix-hairpin-helix N-terminal MIS44_00380 PF01541 GIY-YIG catalytic domain MIS44_00390 PF01351 Ribonuclease HII MIS44_00395 PF03884 DNA gyrase inhibitor YacG MIS44_00400 PF00939 Sodium:sulfate symporter transmembrane region MIS44_00405 PF02684 Lipid-A-disaccharide synthetase MIS44_00410 PF04997 RNA polymerase Rpb1, domain 1 MIS44_00410 PF04998 RNA polymerase Rpb1, domain 5 MIS44_00410 PF05000 RNA polymerase Rpb1, domain 4 MIS44_00410 PF00623 RNA polymerase Rpb1, domain 2 MIS44_00410 PF04983 RNA polymerase Rpb1, domain 3 MIS44_00420 PF04565 RNA polymerase Rpb2, domain 3 MIS44_00420 PF04561 RNA polymerase Rpb2, domain 2 MIS44_00420 PF04563 RNA polymerase beta subunit MIS44_00420 PF00562 RNA polymerase Rpb2, domain 6 MIS44_00420 PF10385 RNA polymerase beta subunit external 1 domain MIS44_00420 PF04560 RNA polymerase Rpb2, domain 7 MIS44_00425 PF16320 Ribosomal protein L7/L12 dimerisation domain MIS44_00425 PF00542 Ribosomal protein L7/L12 C-terminal domain MIS44_00430 PF00466 Ribosomal protein L10 MIS44_00435 PF00687 Ribosomal protein L1p/L10e family MIS44_00440 PF03946 Ribosomal protein L11, N-terminal domain MIS44_00440 PF00298 Ribosomal protein L11, RNA binding domain MIS44_00445 PF02357 Transcription termination factor nusG MIS44_00445 PF00467 KOW motif MIS44_00460 PF00009 Elongation factor Tu GTP binding domain MIS44_00460 PF03144 Elongation factor Tu domain 2 MIS44_00460 PF03143 Elongation factor Tu C-terminal domain MIS44_00480 PF00037 4Fe-4S binding domain MIS44_00485 PF01170 Putative RNA methylase family UPF0020 MIS44_00485 PF02926 THUMP domain MIS44_00485 PF10672 S-adenosylmethionine-dependent methyltransferase MIS44_00490 PF00773 RNB domain MIS44_00495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MIS44_00495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MIS44_00525 PF00478 IMP dehydrogenase / GMP reductase domain MIS44_00525 PF00571 CBS domain MIS44_00535 PF00654 Voltage gated chloride channel MIS44_00540 PF01814 Hemerythrin HHE cation binding domain MIS44_00545 PF00521 DNA gyrase/topoisomerase IV, subunit A MIS44_00545 PF03989 DNA gyrase C-terminal domain, beta-propeller MIS44_00550 PF00884 Sulfatase MIS44_00555 PF00171 Aldehyde dehydrogenase family MIS44_00560 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS44_00585 PF00202 Aminotransferase class-III MIS44_00610 PF00488 MutS domain V MIS44_00610 PF05190 MutS family domain IV MIS44_00610 PF05192 MutS domain III MIS44_00610 PF05188 MutS domain II MIS44_00610 PF01624 MutS domain I MIS44_00620 PF18075 FtsX extracellular domain MIS44_00625 PF00005 ABC transporter MIS44_00630 PF00448 SRP54-type protein, GTPase domain MIS44_00630 PF02881 SRP54-type protein, helical bundle domain MIS44_00630 PF02978 Signal peptide binding domain MIS44_00635 PF06123 Inner membrane protein CreD MIS44_00640 PF00486 Transcriptional regulatory protein, C terminal MIS44_00640 PF00072 Response regulator receiver domain MIS44_00645 PF00512 His Kinase A (phospho-acceptor) domain MIS44_00645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_00645 PF00672 HAMP domain MIS44_00650 PF17782 DprA winged helix domain MIS44_00650 PF02481 DNA recombination-mediator protein A MIS44_00655 PF00889 Elongation factor TS MIS44_00660 PF00318 Ribosomal protein S2 MIS44_00670 PF00162 Phosphoglycerate kinase MIS44_00675 PF18073 Rubredoxin metal binding domain MIS44_00685 PF01548 Transposase MIS44_00685 PF02371 Transposase IS116/IS110/IS902 family MIS44_00725 PF01300 Telomere recombination MIS44_00740 PF13018 Extended Signal Peptide of Type V secretion system MIS44_00740 PF03895 YadA-like membrane anchor domain MIS44_00740 PF05662 Coiled stalk of trimeric autotransporter adhesin MIS44_00740 PF13018 Extended Signal Peptide of Type V secretion system MIS44_00740 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin MIS44_00740 PF03895 YadA-like membrane anchor domain MIS44_00740 PF05662 Coiled stalk of trimeric autotransporter adhesin MIS44_00740 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin MIS44_00745 PF10396 GTP-binding protein TrmE N-terminus MIS44_00745 PF12631 MnmE helical domain MIS44_00745 PF01926 50S ribosome-binding GTPase MIS44_00755 PF18389 TrmO C-terminal domain MIS44_00755 PF01980 tRNA-methyltransferase O MIS44_00775 PF00472 RF-1 domain MIS44_00780 PF00348 Polyprenyl synthetase MIS44_00785 PF02609 Exonuclease VII small subunit MIS44_00790 PF00829 Ribosomal prokaryotic L21 protein MIS44_00795 PF01016 Ribosomal L27 protein MIS44_00805 PF00348 Polyprenyl synthetase MIS44_00810 PF04284 Protein of unknown function (DUF441) MIS44_00830 PF00356 Bacterial regulatory proteins, lacI family MIS44_00835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MIS44_00835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MIS44_00840 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MIS44_00845 PF07690 Major Facilitator Superfamily MIS44_00850 PF01906 Putative heavy-metal-binding MIS44_00855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MIS44_00855 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MIS44_00860 PF01012 Electron transfer flavoprotein domain MIS44_00865 PF00766 Electron transfer flavoprotein FAD-binding domain MIS44_00865 PF01012 Electron transfer flavoprotein domain MIS44_00870 PF07977 FabA-like domain MIS44_00875 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MIS44_00875 PF00132 Bacterial transferase hexapeptide (six repeats) MIS44_00895 PF02080 TrkA-C domain MIS44_00895 PF00999 Sodium/hydrogen exchanger family MIS44_00895 PF03471 Transporter associated domain MIS44_00900 PF02562 PhoH-like protein MIS44_00905 PF01235 Sodium:alanine symporter family MIS44_00930 PF06827 Zinc finger found in FPG and IleRS MIS44_00930 PF00133 tRNA synthetases class I (I, L, M and V) MIS44_00930 PF08264 Anticodon-binding domain of tRNA MIS44_00935 PF18254 HMW1 domain 2 MIS44_00935 PF18071 HMW1C N-terminal MIS44_00950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MIS44_00950 PF01367 5'-3' exonuclease, C-terminal SAM fold MIS44_00950 PF00476 DNA polymerase family A MIS44_00950 PF01612 3'-5' exonuclease MIS44_00955 PF02075 Crossover junction endodeoxyribonuclease RuvC MIS44_00960 PF00005 ABC transporter MIS44_00960 PF00664 ABC transporter transmembrane region MIS44_00980 PF02600 Disulfide bond formation protein DsbB MIS44_00985 PF01925 Sulfite exporter TauE/SafE MIS44_00990 PF12450 von Willebrand factor MIS44_00990 PF00092 von Willebrand factor type A domain MIS44_00990 PF12034 Domain of unknown function (DUF3520) MIS44_00995 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MIS44_00995 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MIS44_00995 PF13288 DXP reductoisomerase C-terminal domain MIS44_01000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MIS44_01020 PF07963 Prokaryotic N-terminal methylation motif MIS44_01020 PF00114 Pilin (bacterial filament) MIS44_01025 PF07963 Prokaryotic N-terminal methylation motif MIS44_01025 PF00114 Pilin (bacterial filament) MIS44_01030 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MIS44_01030 PF02844 Phosphoribosylglycinamide synthetase, N domain MIS44_01030 PF02843 Phosphoribosylglycinamide synthetase, C domain MIS44_01040 PF00696 Amino acid kinase family MIS44_01045 PF01220 Dehydroquinase class II MIS44_01055 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MIS44_01055 PF00056 lactate/malate dehydrogenase, NAD binding domain MIS44_01060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MIS44_01060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS44_01070 PF00132 Bacterial transferase hexapeptide (six repeats) MIS44_01070 PF12804 MobA-like NTP transferase domain MIS44_01085 PF01594 AI-2E family transporter MIS44_01095 PF12826 Helix-hairpin-helix motif MIS44_01095 PF03120 NAD-dependent DNA ligase OB-fold domain MIS44_01095 PF01653 NAD-dependent DNA ligase adenylation domain MIS44_01095 PF00533 BRCA1 C Terminus (BRCT) domain MIS44_01095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MIS44_01110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) MIS44_01115 PF02163 Peptidase family M50 MIS44_01115 PF17820 PDZ domain MIS44_01120 PF07244 Surface antigen variable number repeat MIS44_01120 PF01103 Surface antigen MIS44_01130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MIS44_01130 PF00132 Bacterial transferase hexapeptide (six repeats) MIS44_01140 PF07681 DoxX MIS44_01145 PF07720 Tetratricopeptide repeat MIS44_01145 PF01435 Peptidase family M48 MIS44_01150 PF01906 Putative heavy-metal-binding MIS44_01155 PF01906 Putative heavy-metal-binding MIS44_01165 PF07497 Rho termination factor, RNA-binding domain MIS44_01165 PF07498 Rho termination factor, N-terminal domain MIS44_01165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS44_01170 PF00793 DAHP synthetase I family MIS44_01185 PF01330 RuvA N terminal domain MIS44_01185 PF07499 RuvA, C-terminal domain MIS44_01190 PF01510 N-acetylmuramoyl-L-alanine amidase MIS44_01200 PF00342 Phosphoglucose isomerase MIS44_01205 PF01418 Helix-turn-helix domain, rpiR family MIS44_01205 PF01380 SIS domain MIS44_01205 PF02685 Glucokinase MIS44_01210 PF00293 NUDIX domain MIS44_01215 PF02685 Glucokinase MIS44_01220 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MIS44_01225 PF01810 LysE type translocator MIS44_01235 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MIS44_01235 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MIS44_01240 PF00920 Dehydratase family MIS44_01245 PF00300 Histidine phosphatase superfamily (branch 1) MIS44_01250 PF00535 Glycosyl transferase family 2 MIS44_01260 PF01928 CYTH domain MIS44_01265 PF00830 Ribosomal L28 family MIS44_01270 PF00471 Ribosomal protein L33 MIS44_01275 PF05675 Protein of unknown function (DUF817) MIS44_01280 PF01081 KDPG and KHG aldolase MIS44_01290 PF00593 TonB dependent receptor MIS44_01290 PF07715 TonB-dependent Receptor Plug Domain MIS44_01300 PF00009 Elongation factor Tu GTP binding domain MIS44_01300 PF03144 Elongation factor Tu domain 2 MIS44_01300 PF03143 Elongation factor Tu C-terminal domain MIS44_01305 PF00338 Ribosomal protein S10p/S20e MIS44_01310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MIS44_01315 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MIS44_01330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MIS44_01335 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MIS44_01355 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MIS44_01355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MIS44_01355 PF10531 SLBB domain MIS44_01365 PF06250 YhcG PDDEXK nuclease domain MIS44_01365 PF17761 DUF1016 N-terminal domain MIS44_01370 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MIS44_01370 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MIS44_01370 PF00384 Molybdopterin oxidoreductase MIS44_01375 PF00146 NADH dehydrogenase MIS44_01380 PF12838 4Fe-4S dicluster domain MIS44_01385 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MIS44_01390 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MIS44_01400 PF00361 Proton-conducting membrane transporter MIS44_01400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MIS44_01410 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus MIS44_01410 PF00361 Proton-conducting membrane transporter MIS44_01415 PF00361 Proton-conducting membrane transporter MIS44_01420 PF00465 Iron-containing alcohol dehydrogenase MIS44_01425 PF01116 Fructose-bisphosphate aldolase class-II MIS44_01430 PF16124 RecQ zinc-binding MIS44_01430 PF00570 HRDC domain MIS44_01430 PF09382 RQC domain MIS44_01430 PF00271 Helicase conserved C-terminal domain MIS44_01430 PF00270 DEAD/DEAH box helicase MIS44_01435 PF00152 tRNA synthetases class II (D, K and N) MIS44_01435 PF01336 OB-fold nucleic acid binding domain MIS44_01440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MIS44_01440 PF08447 PAS fold MIS44_01450 PF08447 PAS fold MIS44_01450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MIS44_01460 PF03741 Integral membrane protein TerC family MIS44_01460 PF03471 Transporter associated domain MIS44_01460 PF00571 CBS domain MIS44_01465 PF00696 Amino acid kinase family MIS44_01470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MIS44_01470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MIS44_01480 PF13520 Amino acid permease MIS44_01485 PF01380 SIS domain MIS44_01490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MIS44_01505 PF02542 YgbB family MIS44_01525 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MIS44_01535 PF01025 GrpE MIS44_01545 PF00860 Permease family MIS44_01550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MIS44_01555 PF00149 Calcineurin-like phosphoesterase MIS44_01565 PF00226 DnaJ domain MIS44_01565 PF01556 DnaJ C terminal domain MIS44_01565 PF00684 DnaJ central domain MIS44_01570 PF01699 Sodium/calcium exchanger protein MIS44_01575 PF00920 Dehydratase family MIS44_01595 PF00133 tRNA synthetases class I (I, L, M and V) MIS44_01595 PF10458 Valyl tRNA synthetase tRNA binding arm MIS44_01595 PF08264 Anticodon-binding domain of tRNA MIS44_01610 PF01432 Peptidase family M3 MIS44_01620 PF07516 SecA Wing and Scaffold domain MIS44_01620 PF01043 SecA preprotein cross-linking domain MIS44_01620 PF07517 SecA DEAD-like domain MIS44_01620 PF02810 SEC-C motif MIS44_01630 PF01814 Hemerythrin HHE cation binding domain MIS44_01635 PF01963 TraB family MIS44_01640 PF16325 Peptidase family U32 C-terminal domain MIS44_01640 PF01136 Peptidase family U32 MIS44_01765 PF00535 Glycosyl transferase family 2 MIS44_01770 PF02563 Polysaccharide biosynthesis/export protein MIS44_01780 PF01061 ABC-2 type transporter MIS44_01785 PF00005 ABC transporter MIS44_01795 PF00127 Copper binding proteins, plastocyanin/azurin family MIS44_01830 PF00483 Nucleotidyl transferase MIS44_01850 PF01368 DHH family MIS44_01850 PF02272 DHHA1 domain MIS44_01850 PF17768 RecJ OB domain MIS44_01855 PF00300 Histidine phosphatase superfamily (branch 1) MIS44_01865 PF02632 BioY family MIS44_01875 PF02492 CobW/HypB/UreG, nucleotide-binding domain MIS44_01875 PF07683 Cobalamin synthesis protein cobW C-terminal domain MIS44_01880 PF00535 Glycosyl transferase family 2 MIS44_01885 PF00535 Glycosyl transferase family 2 MIS44_01900 PF04357 TamB, inner membrane protein subunit of TAM complex MIS44_01910 PF00886 Ribosomal protein S16 MIS44_01915 PF05239 PRC-barrel domain MIS44_01915 PF01782 RimM N-terminal domain MIS44_01920 PF01746 tRNA (Guanine-1)-methyltransferase MIS44_01925 PF01245 Ribosomal protein L19 MIS44_01930 PF02545 Maf-like protein MIS44_01935 PF02620 Large ribosomal RNA subunit accumulation protein YceD MIS44_01940 PF01783 Ribosomal L32p protein family MIS44_01950 PF02504 Fatty acid synthesis protein MIS44_01955 PF00267 Gram-negative porin MIS44_01965 PF07664 Ferrous iron transport protein B C terminus MIS44_01965 PF02421 Ferrous iron transport protein B MIS44_01965 PF07670 Nucleoside recognition MIS44_01975 PF01206 Sulfurtransferase TusA MIS44_01985 PF02580 D-Tyr-tRNA(Tyr) deacylase MIS44_01990 PF01168 Alanine racemase, N-terminal domain MIS44_01990 PF00842 Alanine racemase, C-terminal domain MIS44_01995 PF01042 Endoribonuclease L-PSP MIS44_02000 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MIS44_02010 PF00483 Nucleotidyl transferase MIS44_02015 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS44_02020 PF02649 Type I GTP cyclohydrolase folE2 MIS44_02030 PF00588 SpoU rRNA Methylase family MIS44_02035 PF00156 Phosphoribosyl transferase domain MIS44_02040 PF03448 MgtE intracellular N domain MIS44_02040 PF00571 CBS domain MIS44_02040 PF01769 Divalent cation transporter MIS44_02045 PF14821 Threonine synthase N terminus MIS44_02045 PF00291 Pyridoxal-phosphate dependent enzyme MIS44_02050 PF13416 Bacterial extracellular solute-binding protein MIS44_02055 PF00166 Chaperonin 10 Kd subunit MIS44_02065 PF00118 TCP-1/cpn60 chaperonin family MIS44_02070 PF11734 TilS substrate C-terminal domain MIS44_02070 PF00156 Phosphoribosyl transferase domain MIS44_02070 PF01171 PP-loop family MIS44_02080 PF00893 Small Multidrug Resistance protein MIS44_02095 PF12706 Beta-lactamase superfamily domain MIS44_02100 PF01037 Lrp/AsnC ligand binding domain MIS44_02115 PF01235 Sodium:alanine symporter family MIS44_02120 PF00255 Glutathione peroxidase MIS44_02130 PF00072 Response regulator receiver domain MIS44_02135 PF07194 P2 response regulator binding domain MIS44_02135 PF01627 Hpt domain MIS44_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_02135 PF02895 Signal transducing histidine kinase, homodimeric domain MIS44_02135 PF01584 CheW-like domain MIS44_02140 PF01709 Transcriptional regulator MIS44_02150 PF00119 ATP synthase A chain MIS44_02155 PF00137 ATP synthase subunit C MIS44_02160 PF00430 ATP synthase B/B' CF(0) MIS44_02165 PF00213 ATP synthase delta (OSCP) subunit MIS44_02170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS44_02170 PF00306 ATP synthase alpha/beta chain, C terminal domain MIS44_02170 PF02874 ATP synthase alpha/beta family, beta-barrel domain MIS44_02175 PF00231 ATP synthase MIS44_02180 PF02874 ATP synthase alpha/beta family, beta-barrel domain MIS44_02180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MIS44_02185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MIS44_02190 PF01336 OB-fold nucleic acid binding domain MIS44_02190 PF02811 PHP domain MIS44_02190 PF14579 Helix-hairpin-helix motif MIS44_02190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MIS44_02190 PF07733 Bacterial DNA polymerase III alpha NTPase domain MIS44_02210 PF00009 Elongation factor Tu GTP binding domain MIS44_02210 PF16658 Class II release factor RF3, C-terminal domain MIS44_02210 PF03144 Elongation factor Tu domain 2 MIS44_02230 PF06956 Regulator of RNA terminal phosphate cyclase MIS44_02230 PF00158 Sigma-54 interaction domain MIS44_02255 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family MIS44_02275 PF03309 Type III pantothenate kinase MIS44_02275 PF03099 Biotin/lipoate A/B protein ligase family MIS44_02275 PF02237 Biotin protein ligase C terminal domain MIS44_02280 PF04228 Putative neutral zinc metallopeptidase MIS44_02320 PF14693 Ribosomal protein TL5, C-terminal domain MIS44_02320 PF01386 Ribosomal L25p family MIS44_02325 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MIS44_02325 PF14572 Phosphoribosyl synthetase-associated domain MIS44_02340 PF08544 GHMP kinases C terminal MIS44_02340 PF00288 GHMP kinases N terminal domain MIS44_02350 PF03550 Outer membrane lipoprotein LolB MIS44_02355 PF12147 Putative methyltransferase MIS44_02355 PF12146 Serine aminopeptidase, S33 MIS44_02365 PF03739 Lipopolysaccharide export system permease LptF/LptG MIS44_02385 PF13180 PDZ domain MIS44_02385 PF03572 Peptidase family S41 MIS44_02390 PF17946 RecC C-terminal domain MIS44_02425 PF02470 MlaD protein MIS44_02430 PF02405 Permease MlaE MIS44_02445 PF00005 ABC transporter MIS44_02465 PF00925 GTP cyclohydrolase II MIS44_02480 PF04474 Protein of unknown function (DUF554) MIS44_02485 PF01966 HD domain MIS44_02510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MIS44_02515 PF08676 MutL C terminal dimerisation domain MIS44_02515 PF01119 DNA mismatch repair protein, C-terminal domain MIS44_02520 PF08335 GlnD PII-uridylyltransferase MIS44_02520 PF03710 Glutamate-ammonia ligase adenylyltransferase MIS44_02525 PF01430 Hsp33 protein MIS44_02545 PF01784 NIF3 (NGG1p interacting factor 3) MIS44_02550 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MIS44_02550 PF00355 Rieske [2Fe-2S] domain MIS44_02555 PF00033 Cytochrome b/b6/petB MIS44_02555 PF00032 Cytochrome b(C-terminal)/b6/petD MIS44_02560 PF02167 Cytochrome C1 family MIS44_02595 PF00589 Phage integrase family MIS44_02595 PF02899 Phage integrase, N-terminal SAM-like domain MIS44_02670 PF00551 Formyl transferase MIS44_02670 PF02911 Formyl transferase, C-terminal domain MIS44_02690 PF17288 Terminase RNAseH like domain MIS44_02690 PF04466 Phage terminase large subunit MIS44_02735 PF07102 Protein of unknown function (DUF1364) MIS44_02765 PF10548 P22AR C-terminal domain MIS44_02765 PF08346 AntA/AntB antirepressor MIS44_02795 PF00717 Peptidase S24-like MIS44_02795 PF01381 Helix-turn-helix MIS44_02845 PF00436 Single-strand binding protein family MIS44_02860 PF04381 Putative exonuclease, RdgC MIS44_02895 PF00950 ABC 3 transport family MIS44_02910 PF04977 Septum formation initiator MIS44_02915 PF03952 Enolase, N-terminal domain MIS44_02915 PF00113 Enolase, C-terminal TIM barrel domain MIS44_02935 PF01649 Ribosomal protein S20 MIS44_02940 PF03831 PhnA domain MIS44_02940 PF08274 PhnA Zinc-Ribbon MIS44_02950 PF01636 Phosphotransferase enzyme family MIS44_02955 PF04453 LPS transport system D MIS44_02960 PF00639 PPIC-type PPIASE domain MIS44_02960 PF09312 SurA N-terminal domain MIS44_02970 PF01039 Carboxyl transferase domain MIS44_02970 PF17848 Acetyl-coA carboxylase zinc finger domain MIS44_02980 PF01975 Survival protein SurE MIS44_02985 PF01451 Low molecular weight phosphotyrosine protein phosphatase MIS44_03010 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_03015 PF00012 Hsp70 protein MIS44_03025 PF01618 MotA/TolQ/ExbB proton channel family MIS44_03030 PF02472 Biopolymer transport protein ExbD/TolR MIS44_03045 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_03050 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_03055 PF10946 Protein of unknown function DUF2625 MIS44_03060 PF13460 NAD(P)H-binding MIS44_03070 PF00005 ABC transporter MIS44_03075 PF05681 Fumarate hydratase (Fumerase) MIS44_03075 PF05683 Fumarase C-terminus MIS44_03085 PF00890 FAD binding domain MIS44_03085 PF02910 Fumarate reductase flavoprotein C-term MIS44_03090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MIS44_03090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MIS44_03090 PF10531 SLBB domain MIS44_03095 PF00939 Sodium:sulfate symporter transmembrane region MIS44_03115 PF00929 Exonuclease MIS44_03115 PF01541 GIY-YIG catalytic domain MIS44_03120 PF00719 Inorganic pyrophosphatase MIS44_03125 PF03796 DnaB-like helicase C terminal domain MIS44_03125 PF00772 DnaB-like helicase N terminal domain MIS44_03165 PF01668 SmpB protein MIS44_03175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MIS44_03185 PF00885 6,7-dimethyl-8-ribityllumazine synthase MIS44_03190 PF01029 NusB family MIS44_03210 PF03129 Anticodon binding domain MIS44_03210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MIS44_03210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS44_03210 PF02824 TGS domain MIS44_03215 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_03225 PF01170 Putative RNA methylase family UPF0020 MIS44_03225 PF02926 THUMP domain MIS44_03230 PF02557 D-alanyl-D-alanine carboxypeptidase MIS44_03250 PF00115 Cytochrome C and Quinol oxidase polypeptide I MIS44_03265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MIS44_03265 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MIS44_03270 PF00312 Ribosomal protein S15 MIS44_03280 PF02677 Epoxyqueuosine reductase QueH MIS44_03285 PF04607 Region found in RelA / SpoT proteins MIS44_03285 PF02824 TGS domain MIS44_03285 PF13291 ACT domain MIS44_03305 PF00216 Bacterial DNA-binding protein MIS44_03310 PF00575 S1 RNA binding domain MIS44_03315 PF02224 Cytidylate kinase MIS44_03320 PF00923 Transaldolase/Fructose-6-phosphate aldolase MIS44_03325 PF08502 LeuA allosteric (dimerisation) domain MIS44_03325 PF00682 HMGL-like MIS44_03330 PF03150 Di-haem cytochrome c peroxidase MIS44_03330 PF00034 Cytochrome c MIS44_03335 PF08264 Anticodon-binding domain of tRNA MIS44_03335 PF09334 tRNA synthetases class I (M) MIS44_03335 PF01588 Putative tRNA binding domain MIS44_03345 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MIS44_03345 PF13746 4Fe-4S dicluster domain MIS44_03345 PF12801 4Fe-4S binding domain MIS44_03350 PF06969 HemN C-terminal domain MIS44_03350 PF04055 Radical SAM superfamily MIS44_03355 PF04325 Protein of unknown function (DUF465) MIS44_03360 PF02223 Thymidylate kinase MIS44_03370 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS44_03380 PF04279 Intracellular septation protein A MIS44_03385 PF03795 YCII-related domain MIS44_03400 PF00561 alpha/beta hydrolase fold MIS44_03410 PF00707 Translation initiation factor IF-3, C-terminal domain MIS44_03410 PF05198 Translation initiation factor IF-3, N-terminal domain MIS44_03415 PF01632 Ribosomal protein L35 MIS44_03420 PF00453 Ribosomal protein L20 MIS44_03425 PF14437 MafB19-like deaminase MIS44_03430 PF00140 Sigma-70 factor, region 1.2 MIS44_03430 PF04542 Sigma-70 region 2 MIS44_03430 PF04545 Sigma-70, region 4 MIS44_03435 PF01702 Queuine tRNA-ribosyltransferase MIS44_03440 PF02660 Glycerol-3-phosphate acyltransferase MIS44_03445 PF02152 Dihydroneopterin aldolase MIS44_03450 PF00850 Histone deacetylase domain MIS44_03460 PF01208 Uroporphyrinogen decarboxylase (URO-D) MIS44_03470 PF02535 ZIP Zinc transporter MIS44_03475 PF00398 Ribosomal RNA adenine dimethylase MIS44_03510 PF00005 ABC transporter MIS44_03515 PF03605 Anaerobic c4-dicarboxylate membrane transporter MIS44_03520 PF07715 TonB-dependent Receptor Plug Domain MIS44_03520 PF00593 TonB dependent receptor MIS44_03525 PF00149 Calcineurin-like phosphoesterase MIS44_03530 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_03530 PF16193 AAA C-terminal domain MIS44_03530 PF12002 MgsA AAA+ ATPase C terminal MIS44_03560 PF01066 CDP-alcohol phosphatidyltransferase MIS44_03565 PF01464 Transglycosylase SLT domain MIS44_03565 PF01464 Transglycosylase SLT domain MIS44_03565 PF01476 LysM domain MIS44_03565 PF01476 LysM domain MIS44_03580 PF02132 RecR protein MIS44_03580 PF13662 Toprim domain MIS44_03595 PF00692 dUTPase MIS44_03600 PF04381 Putative exonuclease, RdgC MIS44_03615 PF13505 Outer membrane protein beta-barrel domain MIS44_03620 PF00270 DEAD/DEAH box helicase MIS44_03620 PF00271 Helicase conserved C-terminal domain MIS44_03625 PF04060 Putative Fe-S cluster MIS44_03630 PF17762 HTH domain found in ParB protein MIS44_03630 PF02195 ParB-like nuclease domain MIS44_03635 PF01467 Cytidylyltransferase-like MIS44_03645 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MIS44_03675 PF16363 GDP-mannose 4,6 dehydratase MIS44_03680 PF00005 ABC transporter MIS44_03685 PF04321 RmlD substrate binding domain MIS44_03695 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MIS44_03700 PF00849 RNA pseudouridylate synthase MIS44_03705 PF03485 Arginyl tRNA synthetase N terminal domain MIS44_03705 PF05746 DALR anticodon binding domain MIS44_03705 PF00750 tRNA synthetases class I (R) MIS44_03710 PF00588 SpoU rRNA Methylase family MIS44_03710 PF08032 RNA 2'-O ribose methyltransferase substrate binding MIS44_03720 PF00664 ABC transporter transmembrane region MIS44_03720 PF00005 ABC transporter MIS44_03725 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_03730 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_03735 PF00005 ABC transporter MIS44_03735 PF08402 TOBE domain MIS44_03740 PF02080 TrkA-C domain MIS44_03740 PF02254 TrkA-N domain MIS44_03745 PF01548 Transposase MIS44_03745 PF02371 Transposase IS116/IS110/IS902 family MIS44_03755 PF00588 SpoU rRNA Methylase family MIS44_03755 PF08032 RNA 2'-O ribose methyltransferase substrate binding MIS44_03775 PF17674 HHH domain MIS44_03775 PF00575 S1 RNA binding domain MIS44_03775 PF09371 Tex-like protein N-terminal domain MIS44_03775 PF16921 Tex protein YqgF-like domain MIS44_03780 PF12161 HsdM N-terminal domain MIS44_03780 PF02384 N-6 DNA Methylase MIS44_03800 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_03805 PF00933 Glycosyl hydrolase family 3 N terminal domain MIS44_03810 PF01026 TatD related DNase MIS44_03820 PF09115 DNA polymerase III, delta subunit, C terminal MIS44_03860 PF02403 Seryl-tRNA synthetase N-terminal domain MIS44_03860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS44_03875 PF04403 Paraquat-inducible protein A MIS44_03880 PF08361 MAATS-type transcriptional repressor, C-terminal region MIS44_03880 PF00440 Bacterial regulatory proteins, tetR family MIS44_03885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS44_03885 PF00529 HlyD membrane-fusion protein of T1SS MIS44_03890 PF00873 AcrB/AcrD/AcrF family MIS44_03900 PF01098 Cell cycle protein MIS44_03905 PF03033 Glycosyltransferase family 28 N-terminal domain MIS44_03905 PF04101 Glycosyltransferase family 28 C-terminal domain MIS44_03910 PF02541 Ppx/GppA phosphatase family MIS44_03920 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_03950 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MIS44_03965 PF17757 UvrB interaction domain MIS44_03965 PF02151 UvrB/uvrC motif MIS44_03965 PF04851 Type III restriction enzyme, res subunit MIS44_03965 PF00271 Helicase conserved C-terminal domain MIS44_03965 PF12344 Ultra-violet resistance protein B MIS44_03980 PF00209 Sodium:neurotransmitter symporter family MIS44_03985 PF01022 Bacterial regulatory protein, arsR family MIS44_03990 PF00581 Rhodanese-like domain MIS44_03990 PF11127 Protein of unknown function (DUF2892) MIS44_04000 PF00464 Serine hydroxymethyltransferase MIS44_04065 PF07352 Bacteriophage Mu Gam like protein MIS44_04080 PF00216 Bacterial DNA-binding protein MIS44_04085 PF00684 DnaJ central domain MIS44_04085 PF00226 DnaJ domain MIS44_04085 PF01556 DnaJ C terminal domain MIS44_04090 PF06252 Protein of unknown function (DUF1018) MIS44_04165 PF04233 Phage Mu protein F like protein MIS44_04275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MIS44_04275 PF00289 Biotin carboxylase, N-terminal domain MIS44_04275 PF02785 Biotin carboxylase C-terminal domain MIS44_04285 PF00364 Biotin-requiring enzyme MIS44_04295 PF00581 Rhodanese-like domain MIS44_04300 PF02652 L-lactate permease MIS44_04305 PF11870 Domain of unknown function (DUF3390) MIS44_04305 PF02589 LUD domain MIS44_04305 PF13183 4Fe-4S dicluster domain MIS44_04310 PF02589 LUD domain MIS44_04315 PF02754 Cysteine-rich domain MIS44_04320 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MIS44_04320 PF18074 Primosomal protein N C-terminal domain MIS44_04320 PF17764 3′ DNA-binding domain (3′BD) MIS44_04320 PF00271 Helicase conserved C-terminal domain MIS44_04320 PF00270 DEAD/DEAH box helicase MIS44_04325 PF02219 Methylenetetrahydrofolate reductase MIS44_04330 PF01717 Cobalamin-independent synthase, Catalytic domain MIS44_04330 PF08267 Cobalamin-independent synthase, N-terminal domain MIS44_04335 PF11967 Recombination protein O N terminal MIS44_04335 PF02565 Recombination protein O C terminal MIS44_04340 PF00270 DEAD/DEAH box helicase MIS44_04340 PF17191 RecG wedge domain MIS44_04340 PF00271 Helicase conserved C-terminal domain MIS44_04345 PF01551 Peptidase family M23 MIS44_04355 PF00557 Metallopeptidase family M24 MIS44_04360 PF02673 Bacitracin resistance protein BacA MIS44_04375 PF13335 Magnesium chelatase, subunit ChlI C-terminal MIS44_04375 PF01078 Magnesium chelatase, subunit ChlI MIS44_04380 PF04380 Membrane fusogenic activity MIS44_04385 PF00438 S-adenosylmethionine synthetase, N-terminal domain MIS44_04385 PF02772 S-adenosylmethionine synthetase, central domain MIS44_04385 PF02773 S-adenosylmethionine synthetase, C-terminal domain MIS44_04390 PF00155 Aminotransferase class I and II MIS44_04395 PF03553 Na+/H+ antiporter family MIS44_04400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MIS44_04400 PF00391 PEP-utilising enzyme, mobile domain MIS44_04400 PF02896 PEP-utilising enzyme, TIM barrel domain MIS44_04450 PF00849 RNA pseudouridylate synthase MIS44_04450 PF01479 S4 domain MIS44_04460 PF00575 S1 RNA binding domain MIS44_04460 PF10150 Ribonuclease E/G family MIS44_04460 PF12111 Polyribonucleotide phosphorylase C terminal MIS44_04465 PF00437 Type II/IV secretion system protein MIS44_04470 PF00437 Type II/IV secretion system protein MIS44_04475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MIS44_04475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MIS44_04490 PF01491 Frataxin-like domain MIS44_04505 PF11067 Protein of unknown function (DUF2868) MIS44_04510 PF01467 Cytidylyltransferase-like MIS44_04515 PF03631 Virulence factor BrkB MIS44_04520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS44_04520 PF03466 LysR substrate binding domain MIS44_04525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MIS44_04525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MIS44_04530 PF01842 ACT domain MIS44_04530 PF00696 Amino acid kinase family MIS44_04530 PF13840 ACT domain MIS44_04540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MIS44_04550 PF13091 PLD-like domain MIS44_04560 PF01565 FAD binding domain MIS44_04560 PF09330 D-lactate dehydrogenase, membrane binding MIS44_04575 PF05167 Uncharacterised ACR (DUF711) MIS44_04590 PF01053 Cys/Met metabolism PLP-dependent enzyme MIS44_04595 PF04055 Radical SAM superfamily MIS44_04595 PF00919 Uncharacterized protein family UPF0004 MIS44_04595 PF01938 TRAM domain MIS44_04600 PF01790 Prolipoprotein diacylglyceryl transferase MIS44_04605 PF00005 ABC transporter MIS44_04620 PF00204 DNA gyrase B MIS44_04620 PF00986 DNA gyrase B subunit, carboxyl terminus MIS44_04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_04620 PF01751 Toprim domain MIS44_04620 PF18053 DNA gyrase B subunit insert domain MIS44_04645 PF13409 Glutathione S-transferase, N-terminal domain MIS44_04660 PF01513 ATP-NAD kinase MIS44_04670 PF13419 Haloacid dehalogenase-like hydrolase MIS44_04675 PF00881 Nitroreductase family MIS44_04680 PF02503 Polyphosphate kinase middle domain MIS44_04680 PF13090 Polyphosphate kinase C-terminal domain 2 MIS44_04680 PF13089 Polyphosphate kinase N-terminal domain MIS44_04680 PF17941 Polyphosphate kinase C-terminal domain 1 MIS44_04685 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_04690 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_04695 PF00005 ABC transporter MIS44_04700 PF00085 Thioredoxin MIS44_04700 PF02683 Cytochrome C biogenesis protein transmembrane region MIS44_04700 PF11412 Disulphide bond corrector protein DsbC MIS44_04705 PF01435 Peptidase family M48 MIS44_04725 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) MIS44_04730 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MIS44_04730 PF12169 DNA polymerase III subunits gamma and tau domain III MIS44_04730 PF12170 DNA polymerase III tau subunit V interacting with alpha MIS44_04735 PF00085 Thioredoxin MIS44_04740 PF02033 Ribosome-binding factor A MIS44_04745 PF03702 Anhydro-N-acetylmuramic acid kinase MIS44_04750 PF03548 Outer membrane lipoprotein carrier protein LolA MIS44_04755 PF04305 Protein of unknown function (DUF455) MIS44_04760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MIS44_04765 PF00437 Type II/IV secretion system protein MIS44_04765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MIS44_04770 PF00482 Type II secretion system (T2SS), protein F MIS44_04775 PF01478 Type IV leader peptidase family MIS44_04775 PF06750 Bacterial Peptidase A24 N-terminal domain MIS44_04780 PF01121 Dephospho-CoA kinase MIS44_04785 PF07072 Cell division protein MIS44_04790 PF02464 Competence-damaged protein MIS44_04795 PF01300 Telomere recombination MIS44_04800 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MIS44_04800 PF01565 FAD binding domain MIS44_04805 PF02861 Clp amino terminal domain, pathogenicity island component MIS44_04805 PF17871 AAA lid domain MIS44_04805 PF07724 AAA domain (Cdc48 subfamily) MIS44_04805 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_04805 PF10431 C-terminal, D2-small domain, of ClpB protein MIS44_04810 PF02617 ATP-dependent Clp protease adaptor protein ClpS MIS44_04815 PF00313 'Cold-shock' DNA-binding domain MIS44_04830 PF08534 Redoxin MIS44_04830 PF00462 Glutaredoxin MIS44_04835 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS44_04835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MIS44_04840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MIS44_04850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS44_04850 PF00529 HlyD membrane-fusion protein of T1SS MIS44_04855 PF01966 HD domain MIS44_04855 PF08335 GlnD PII-uridylyltransferase MIS44_04860 PF03668 P-loop ATPase protein family MIS44_04865 PF02603 HPr Serine kinase N terminus MIS44_04865 PF07475 HPr Serine kinase C-terminal domain MIS44_04880 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MIS44_04880 PF01266 FAD dependent oxidoreductase MIS44_04915 PF01553 Acyltransferase MIS44_04920 PF01256 Carbohydrate kinase MIS44_04925 PF04384 Iron-sulphur cluster assembly MIS44_04930 PF11799 impB/mucB/samB family C-terminal domain MIS44_04930 PF00817 impB/mucB/samB family MIS44_04930 PF11798 IMS family HHH motif MIS44_04935 PF01979 Amidohydrolase family MIS44_04945 PF03807 NADP oxidoreductase coenzyme F420-dependent MIS44_04945 PF14748 Pyrroline-5-carboxylate reductase dimerisation MIS44_04955 PF01926 50S ribosome-binding GTPase MIS44_04955 PF06071 Protein of unknown function (DUF933) MIS44_04970 PF00132 Bacterial transferase hexapeptide (six repeats) MIS44_04975 PF00294 pfkB family carbohydrate kinase MIS44_04980 PF13302 Acetyltransferase (GNAT) domain MIS44_04995 PF01467 Cytidylyltransferase-like MIS44_05000 PF03222 Tryptophan/tyrosine permease family MIS44_05010 PF07726 ATPase family associated with various cellular activities (AAA) MIS44_05010 PF17863 AAA lid domain MIS44_05015 PF02779 Transketolase, pyrimidine binding domain MIS44_05015 PF02780 Transketolase, C-terminal domain MIS44_05015 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MIS44_05020 PF00156 Phosphoribosyl transferase domain MIS44_05035 PF02875 Mur ligase family, glutamate ligase domain MIS44_05035 PF08245 Mur ligase middle domain MIS44_05045 PF05175 Methyltransferase small domain MIS44_05055 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_05060 PF01807 CHC2 zinc finger MIS44_05060 PF08275 DNA primase catalytic core, N-terminal domain MIS44_05060 PF08278 DNA primase DnaG DnaB-binding MIS44_05060 PF10410 DnaB-helicase binding domain of primase MIS44_05065 PF02872 5'-nucleotidase, C-terminal domain MIS44_05065 PF00149 Calcineurin-like phosphoesterase MIS44_05070 PF03412 Peptidase C39 family MIS44_05070 PF00005 ABC transporter MIS44_05070 PF00664 ABC transporter transmembrane region MIS44_05075 PF01725 Ham1 family MIS44_05080 PF00578 AhpC/TSA family MIS44_05085 PF07690 Major Facilitator Superfamily MIS44_05090 PF00691 OmpA family MIS44_05090 PF13488 Glycine zipper MIS44_05105 PF01515 Phosphate acetyl/butaryl transferase MIS44_05105 PF07085 DRTGG domain MIS44_05110 PF02659 Putative manganese efflux pump MIS44_05120 PF03601 Conserved hypothetical protein 698 MIS44_05125 PF00561 alpha/beta hydrolase fold MIS44_05125 PF07021 Methionine biosynthesis protein MetW MIS44_05135 PF00561 alpha/beta hydrolase fold MIS44_05140 PF02824 TGS domain MIS44_05140 PF04607 Region found in RelA / SpoT proteins MIS44_05140 PF13291 ACT domain MIS44_05145 PF01192 RNA polymerase Rpb6 MIS44_05150 PF00625 Guanylate kinase MIS44_05155 PF00834 Ribulose-phosphate 3 epimerase family MIS44_05160 PF10576 Iron-sulfur binding domain of endonuclease III MIS44_05160 PF00730 HhH-GPD superfamily base excision DNA repair protein MIS44_05160 PF14815 NUDIX domain MIS44_05160 PF00633 Helix-hairpin-helix motif MIS44_05165 PF01026 TatD related DNase MIS44_05170 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MIS44_05170 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MIS44_05175 PF01040 UbiA prenyltransferase family MIS44_05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS44_05180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MIS44_05185 PF00155 Aminotransferase class I and II MIS44_05205 PF00149 Calcineurin-like phosphoesterase MIS44_05215 PF08240 Alcohol dehydrogenase GroES-like domain MIS44_05215 PF00107 Zinc-binding dehydrogenase MIS44_05220 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_05230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MIS44_05230 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MIS44_05230 PF02769 AIR synthase related protein, C-terminal domain MIS44_05235 PF00175 Oxidoreductase NAD-binding domain MIS44_05235 PF00970 Oxidoreductase FAD-binding domain MIS44_05245 PF13361 UvrD-like helicase C-terminal domain MIS44_05245 PF00580 UvrD/REP helicase N-terminal domain MIS44_05250 PF17092 Penicillin-binding protein OB-like domain MIS44_05250 PF00905 Penicillin binding protein transpeptidase domain MIS44_05250 PF00912 Transglycosylase MIS44_05275 PF07660 Secretin and TonB N terminus short domain MIS44_05275 PF03958 Bacterial type II/III secretion system short domain MIS44_05275 PF00263 Bacterial type II and III secretion system protein MIS44_05275 PF11741 AMIN domain MIS44_05280 PF01202 Shikimate kinase MIS44_05285 PF01761 3-dehydroquinate synthase MIS44_05295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MIS44_05300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MIS44_05305 PF03951 Glutamine synthetase, beta-Grasp domain MIS44_05305 PF00120 Glutamine synthetase, catalytic domain MIS44_05325 PF01180 Dihydroorotate dehydrogenase MIS44_05345 PF01434 Peptidase family M41 MIS44_05345 PF06480 FtsH Extracellular MIS44_05345 PF17862 AAA+ lid domain MIS44_05345 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_05350 PF01728 FtsJ-like methyltransferase MIS44_05355 PF00970 Oxidoreductase FAD-binding domain MIS44_05355 PF00175 Oxidoreductase NAD-binding domain MIS44_05365 PF05661 Protein of unknown function (DUF808) MIS44_05385 PF00266 Aminotransferase class-V MIS44_05390 PF00815 Histidinol dehydrogenase MIS44_05400 PF01634 ATP phosphoribosyltransferase MIS44_05405 PF02630 SCO1/SenC MIS44_05410 PF00912 Transglycosylase MIS44_05415 PF08501 Shikimate dehydrogenase substrate binding domain MIS44_05415 PF01488 Shikimate / quinate 5-dehydrogenase MIS44_05415 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MIS44_05420 PF03471 Transporter associated domain MIS44_05420 PF00571 CBS domain MIS44_05425 PF02130 Uncharacterized protein family UPF0054 MIS44_05430 PF05175 Methyltransferase small domain MIS44_05435 PF00005 ABC transporter MIS44_05435 PF06472 ABC transporter transmembrane region 2 MIS44_05440 PF07715 TonB-dependent Receptor Plug Domain MIS44_05440 PF00593 TonB dependent receptor MIS44_05445 PF01464 Transglycosylase SLT domain MIS44_05445 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain MIS44_05455 PF00248 Aldo/keto reductase family MIS44_05470 PF00180 Isocitrate/isopropylmalate dehydrogenase MIS44_05475 PF03616 Sodium/glutamate symporter MIS44_05485 PF02698 DUF218 domain MIS44_05490 PF00218 Indole-3-glycerol phosphate synthase MIS44_05500 PF03279 Bacterial lipid A biosynthesis acyltransferase MIS44_05505 PF00155 Aminotransferase class I and II MIS44_05510 PF00475 Imidazoleglycerol-phosphate dehydratase MIS44_05535 PF02675 S-adenosylmethionine decarboxylase MIS44_05545 PF07690 Major Facilitator Superfamily MIS44_05565 PF01433 Peptidase family M1 domain MIS44_05565 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MIS44_05565 PF11940 Domain of unknown function (DUF3458) Ig-like fold MIS44_05575 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MIS44_05580 PF01523 Putative modulator of DNA gyrase MIS44_05590 PF02934 GatB/GatE catalytic domain MIS44_05590 PF02637 GatB domain MIS44_05600 PF08245 Mur ligase middle domain MIS44_05600 PF02875 Mur ligase family, glutamate ligase domain MIS44_05605 PF04076 Bacterial OB fold (BOF) protein MIS44_05630 PF03060 Nitronate monooxygenase MIS44_05640 PF03447 Homoserine dehydrogenase, NAD binding domain MIS44_05640 PF00742 Homoserine dehydrogenase MIS44_05640 PF01842 ACT domain MIS44_05645 PF00456 Transketolase, thiamine diphosphate binding domain MIS44_05645 PF02780 Transketolase, C-terminal domain MIS44_05645 PF02779 Transketolase, pyrimidine binding domain MIS44_05650 PF00324 Amino acid permease MIS44_05655 PF01171 PP-loop family MIS44_05665 PF03755 YicC-like family, N-terminal region MIS44_05665 PF08340 Domain of unknown function (DUF1732) MIS44_05670 PF00849 RNA pseudouridylate synthase MIS44_05675 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS44_05680 PF02817 e3 binding domain MIS44_05680 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MIS44_05680 PF00364 Biotin-requiring enzyme MIS44_05685 PF03891 Domain of unknown function (DUF333) MIS44_05695 PF00456 Transketolase, thiamine diphosphate binding domain MIS44_05695 PF17831 Pyruvate dehydrogenase E1 component middle domain MIS44_05700 PF02386 Cation transport protein MIS44_05715 PF00692 dUTPase MIS44_05740 PF01521 Iron-sulphur cluster biosynthesis MIS44_05745 PF10150 Ribonuclease E/G family MIS44_05745 PF00575 S1 RNA binding domain MIS44_05755 PF04551 GcpE protein MIS44_05760 PF13464 Domain of unknown function (DUF4115) MIS44_05770 PF04055 Radical SAM superfamily MIS44_05775 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_05780 PF00334 Nucleoside diphosphate kinase MIS44_05790 PF01593 Flavin containing amine oxidoreductase MIS44_05795 PF00106 short chain dehydrogenase MIS44_05800 PF01791 DeoC/LacD family aldolase MIS44_05815 PF14622 Ribonuclease-III-like MIS44_05815 PF00035 Double-stranded RNA binding motif MIS44_05820 PF00156 Phosphoribosyl transferase domain MIS44_05830 PF01926 50S ribosome-binding GTPase MIS44_05830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MIS44_05845 PF09976 Tetratricopeptide repeat-like domain MIS44_05850 PF03129 Anticodon binding domain MIS44_05850 PF13393 Histidyl-tRNA synthetase MIS44_05865 PF01479 S4 domain MIS44_05865 PF00849 RNA pseudouridylate synthase MIS44_05870 PF01597 Glycine cleavage H-protein MIS44_05875 PF00698 Acyl transferase domain MIS44_05900 PF00294 pfkB family carbohydrate kinase MIS44_05910 PF02911 Formyl transferase, C-terminal domain MIS44_05910 PF00551 Formyl transferase MIS44_05920 PF02441 Flavoprotein MIS44_05930 PF10609 NUBPL iron-transfer P-loop NTPase MIS44_05935 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MIS44_05940 PF01502 Phosphoribosyl-AMP cyclohydrolase MIS44_05945 PF05981 CreA protein MIS44_05950 PF04079 Segregation and condensation complex subunit ScpB MIS44_05955 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) MIS44_05960 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MIS44_05960 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MIS44_05965 PF00013 KH domain MIS44_05965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MIS44_05965 PF01138 3' exoribonuclease family, domain 1 MIS44_05965 PF00575 S1 RNA binding domain MIS44_05965 PF03725 3' exoribonuclease family, domain 2 MIS44_05970 PF02699 Preprotein translocase subunit MIS44_05975 PF07549 SecD/SecF GG Motif MIS44_05975 PF13721 SecD export protein N-terminal TM region MIS44_05975 PF02355 Protein export membrane protein MIS44_05980 PF07549 SecD/SecF GG Motif MIS44_05980 PF02355 Protein export membrane protein MIS44_05985 PF07992 Pyridine nucleotide-disulphide oxidoreductase MIS44_05995 PF03725 3' exoribonuclease family, domain 2 MIS44_05995 PF01138 3' exoribonuclease family, domain 1 MIS44_06005 PF01479 S4 domain MIS44_06015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MIS44_06020 PF02348 Cytidylyltransferase MIS44_06025 PF04575 Protein of unknown function (DUF560) MIS44_06035 PF17483 C-lobe handle domain of Tf-binding protein B MIS44_06035 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B MIS44_06035 PF17484 N-Lobe handle Tf-binding protein B MIS44_06040 PF01548 Transposase MIS44_06040 PF02371 Transposase IS116/IS110/IS902 family MIS44_06050 PF03956 Lysine exporter LysO MIS44_06055 PF00814 Glycoprotease family MIS44_06060 PF02021 Uncharacterised protein family UPF0102 MIS44_06065 PF13580 SIS domain MIS44_06070 PF04972 BON domain MIS44_06085 PF12848 ABC transporter MIS44_06085 PF00005 ABC transporter MIS44_06095 PF03167 Uracil DNA glycosylase superfamily MIS44_06100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MIS44_06105 PF01384 Phosphate transporter family MIS44_06110 PF00578 AhpC/TSA family MIS44_06120 PF01926 50S ribosome-binding GTPase MIS44_06125 PF06039 Malate:quinone oxidoreductase (Mqo) MIS44_06130 PF00585 C-terminal regulatory domain of Threonine dehydratase MIS44_06130 PF00291 Pyridoxal-phosphate dependent enzyme MIS44_06150 PF00075 RNase H MIS44_06155 PF01556 DnaJ C terminal domain MIS44_06155 PF00684 DnaJ central domain MIS44_06155 PF00226 DnaJ domain MIS44_06165 PF03372 Endonuclease/Exonuclease/phosphatase family MIS44_06170 PF07724 AAA domain (Cdc48 subfamily) MIS44_06170 PF10431 C-terminal, D2-small domain, of ClpB protein MIS44_06170 PF06689 ClpX C4-type zinc finger MIS44_06175 PF01037 Lrp/AsnC ligand binding domain MIS44_06185 PF00005 ABC transporter MIS44_06190 PF00171 Aldehyde dehydrogenase family MIS44_06195 PF00677 Lumazine binding domain MIS44_06200 PF00709 Adenylosuccinate synthetase MIS44_06225 PF13393 Histidyl-tRNA synthetase MIS44_06235 PF01472 PUA domain MIS44_06235 PF00696 Amino acid kinase family MIS44_06240 PF00579 tRNA synthetases class I (W and Y) MIS44_06250 PF01926 50S ribosome-binding GTPase MIS44_06255 PF00034 Cytochrome c MIS44_06260 PF05140 ResB-like family MIS44_06270 PF07963 Prokaryotic N-terminal methylation motif MIS44_06275 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor MIS44_06275 PF07963 Prokaryotic N-terminal methylation motif MIS44_06280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MIS44_06280 PF00205 Thiamine pyrophosphate enzyme, central domain MIS44_06280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MIS44_06285 PF10369 Small subunit of acetolactate synthase MIS44_06295 PF01479 S4 domain MIS44_06295 PF00849 RNA pseudouridylate synthase MIS44_06305 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase MIS44_06320 PF03900 Porphobilinogen deaminase, C-terminal domain MIS44_06320 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MIS44_06325 PF02082 Transcriptional regulator MIS44_06335 PF03577 Peptidase family C69 MIS44_06340 PF00871 Acetokinase family MIS44_06345 PF01381 Helix-turn-helix MIS44_06350 PF02811 PHP domain MIS44_06355 PF04306 Protein of unknown function (DUF456) MIS44_06365 PF04575 Protein of unknown function (DUF560) MIS44_06370 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B MIS44_06370 PF17484 N-Lobe handle Tf-binding protein B MIS44_06370 PF17483 C-lobe handle domain of Tf-binding protein B MIS44_06375 PF07715 TonB-dependent Receptor Plug Domain MIS44_06375 PF00593 TonB dependent receptor MIS44_06380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MIS44_06400 PF00809 Pterin binding enzyme MIS44_06410 PF00437 Type II/IV secretion system protein MIS44_06425 PF14718 Soluble lytic murein transglycosylase L domain MIS44_06425 PF01464 Transglycosylase SLT domain MIS44_06430 PF13417 Glutathione S-transferase, N-terminal domain MIS44_06430 PF04399 Glutaredoxin 2, C terminal domain MIS44_06445 PF00881 Nitroreductase family MIS44_06450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MIS44_06455 PF01520 N-acetylmuramoyl-L-alanine amidase MIS44_06455 PF11741 AMIN domain MIS44_06460 PF00588 SpoU rRNA Methylase family MIS44_06465 PF00543 Nitrogen regulatory protein P-II MIS44_06470 PF00072 Response regulator receiver domain MIS44_06470 PF00158 Sigma-54 interaction domain MIS44_06470 PF02954 Bacterial regulatory protein, Fis family MIS44_06475 PF00512 His Kinase A (phospho-acceptor) domain MIS44_06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_06480 PF00521 DNA gyrase/topoisomerase IV, subunit A MIS44_06490 PF12706 Beta-lactamase superfamily domain MIS44_06495 PF09157 Pseudouridine synthase II TruB, C-terminal MIS44_06495 PF16198 tRNA pseudouridylate synthase B C-terminal domain MIS44_06495 PF01509 TruB family pseudouridylate synthase (N terminal domain) MIS44_06500 PF01171 PP-loop family MIS44_06500 PF09179 TilS substrate binding domain MIS44_06505 PF00591 Glycosyl transferase family, a/b domain MIS44_06505 PF02885 Glycosyl transferase family, helical bundle domain MIS44_06515 PF00849 RNA pseudouridylate synthase MIS44_06515 PF01479 S4 domain MIS44_06520 PF03772 Competence protein MIS44_06520 PF00753 Metallo-beta-lactamase superfamily MIS44_06525 PF00009 Elongation factor Tu GTP binding domain MIS44_06525 PF03144 Elongation factor Tu domain 2 MIS44_06525 PF00679 Elongation factor G C-terminus MIS44_06535 PF04445 Putative SAM-dependent methyltransferase MIS44_06565 PF04717 Type VI secretion system, phage-baseplate injector MIS44_06590 PF03527 RHS protein MIS44_06590 PF05593 RHS Repeat MIS44_06595 PF04717 Type VI secretion system, phage-baseplate injector MIS44_06625 PF05736 OprF membrane domain MIS44_06625 PF00691 OmpA family MIS44_06650 PF00239 Resolvase, N terminal domain MIS44_06650 PF02796 Helix-turn-helix domain of resolvase MIS44_06675 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MIS44_06690 PF02463 RecF/RecN/SMC N terminal domain MIS44_06700 PF02666 Phosphatidylserine decarboxylase MIS44_06705 PF01292 Prokaryotic cytochrome b561 MIS44_06725 PF00293 NUDIX domain MIS44_06735 PF02578 Multi-copper polyphenol oxidoreductase laccase MIS44_06740 PF06962 Putative rRNA methylase MIS44_06745 PF07650 KH domain MIS44_06745 PF01926 50S ribosome-binding GTPase MIS44_06750 PF10688 Bacterial inner membrane protein MIS44_06760 PF00005 ABC transporter MIS44_06760 PF12848 ABC transporter MIS44_06770 PF01648 4'-phosphopantetheinyl transferase superfamily MIS44_06775 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MIS44_06780 PF04390 Lipopolysaccharide-assembly MIS44_06795 PF02190 ATP-dependent protease La (LON) substrate-binding domain MIS44_06795 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_06795 PF05362 Lon protease (S16) C-terminal proteolytic domain MIS44_06800 PF00216 Bacterial DNA-binding protein MIS44_06805 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS44_06815 PF12848 ABC transporter MIS44_06815 PF00005 ABC transporter MIS44_06830 PF00459 Inositol monophosphatase family MIS44_06835 PF04452 RNA methyltransferase MIS44_06840 PF09397 Ftsk gamma domain MIS44_06840 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MIS44_06840 PF01580 FtsK/SpoIIIE family MIS44_06840 PF17854 FtsK alpha domain MIS44_06845 PF13145 PPIC-type PPIASE domain MIS44_06850 PF02569 Pantoate-beta-alanine ligase MIS44_06855 PF00117 Glutamine amidotransferase class-I MIS44_06860 PF01207 Dihydrouridine synthase (Dus) MIS44_06865 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_06870 PF01741 Large-conductance mechanosensitive channel, MscL MIS44_06875 PF13538 UvrD-like helicase C-terminal domain MIS44_06885 PF02867 Ribonucleotide reductase, barrel domain MIS44_06885 PF00317 Ribonucleotide reductase, all-alpha domain MIS44_06885 PF03477 ATP cone domain MIS44_06895 PF02142 MGS-like domain MIS44_06895 PF01808 AICARFT/IMPCHase bienzyme MIS44_06905 PF00892 EamA-like transporter family MIS44_06910 PF02954 Bacterial regulatory protein, Fis family MIS44_06920 PF13525 Outer membrane lipoprotein MIS44_06925 PF00902 Sec-independent protein translocase protein (TatC) MIS44_06930 PF02416 mttA/Hcf106 family MIS44_06935 PF02416 mttA/Hcf106 family MIS44_06945 PF00892 EamA-like transporter family MIS44_06950 PF04073 Aminoacyl-tRNA editing domain MIS44_06950 PF03129 Anticodon binding domain MIS44_06950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS44_06960 PF00462 Glutaredoxin MIS44_06965 PF00579 tRNA synthetases class I (W and Y) MIS44_06970 PF13307 Helicase C-terminal domain MIS44_06970 PF06733 DEAD_2 MIS44_06975 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MIS44_06975 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MIS44_06985 PF01479 S4 domain MIS44_06985 PF00849 RNA pseudouridylate synthase MIS44_06990 PF01235 Sodium:alanine symporter family MIS44_06995 PF02645 Uncharacterised protein, DegV family COG1307 MIS44_07000 PF01636 Phosphotransferase enzyme family MIS44_07005 PF01841 Transglutaminase-like superfamily MIS44_07005 PF13559 Domain of unknown function (DUF4129) MIS44_07005 PF11992 Domain of unknown function (DUF3488) MIS44_07015 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MIS44_07015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MIS44_07015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MIS44_07020 PF01177 Asp/Glu/Hydantoin racemase MIS44_07025 PF02233 NAD(P) transhydrogenase beta subunit MIS44_07035 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MIS44_07035 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MIS44_07040 PF03449 Transcription elongation factor, N-terminal MIS44_07040 PF01272 Transcription elongation factor, GreA/GreB, C-term MIS44_07045 PF07687 Peptidase dimerisation domain MIS44_07045 PF01546 Peptidase family M20/M25/M40 MIS44_07050 PF00268 Ribonucleotide reductase, small chain MIS44_07055 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS44_07070 PF00849 RNA pseudouridylate synthase MIS44_07070 PF01479 S4 domain MIS44_07080 PF02631 RecX family MIS44_07085 PF13419 Haloacid dehalogenase-like hydrolase MIS44_07095 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain MIS44_07095 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain MIS44_07100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MIS44_07100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MIS44_07105 PF02653 Branched-chain amino acid transport system / permease component MIS44_07110 PF00005 ABC transporter MIS44_07115 PF13407 Periplasmic binding protein domain MIS44_07120 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MIS44_07120 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MIS44_07125 PF10509 Galactokinase galactose-binding signature MIS44_07125 PF08544 GHMP kinases C terminal MIS44_07125 PF00288 GHMP kinases N terminal domain MIS44_07135 PF00593 TonB dependent receptor MIS44_07135 PF07715 TonB-dependent Receptor Plug Domain MIS44_07140 PF02548 Ketopantoate hydroxymethyltransferase MIS44_07145 PF09335 SNARE associated Golgi protein MIS44_07150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MIS44_07150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MIS44_07150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MIS44_07150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MIS44_07160 PF00330 Aconitase family (aconitate hydratase) MIS44_07180 PF00694 Aconitase C-terminal domain MIS44_07190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MIS44_07190 PF00925 GTP cyclohydrolase II MIS44_07195 PF03618 Kinase/pyrophosphorylase MIS44_07200 PF01501 Glycosyl transferase family 8 MIS44_07205 PF03652 Holliday junction resolvase MIS44_07210 PF02622 Uncharacterized ACR, COG1678 MIS44_07215 PF00005 ABC transporter MIS44_07215 PF16326 ABC transporter C-terminal domain MIS44_07215 PF12848 ABC transporter MIS44_07220 PF02575 YbaB/EbfC DNA-binding family MIS44_07225 PF00731 AIR carboxylase MIS44_07230 PF00762 Ferrochelatase MIS44_07235 PF02547 Queuosine biosynthesis protein MIS44_07245 PF13356 Arm DNA-binding domain MIS44_07245 PF00589 Phage integrase family MIS44_07245 PF14659 Phage integrase, N-terminal SAM-like domain MIS44_07315 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS44_07325 PF05958 tRNA (Uracil-5-)-methyltransferase MIS44_07335 PF10502 Signal peptidase, peptidase S26 MIS44_07340 PF02321 Outer membrane efflux protein MIS44_07345 PF02687 FtsX-like permease family MIS44_07345 PF12704 MacB-like periplasmic core domain MIS44_07345 PF00005 ABC transporter MIS44_07350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS44_07360 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_07365 PF04127 DNA / pantothenate metabolism flavoprotein MIS44_07365 PF02441 Flavoprotein MIS44_07375 PF02601 Exonuclease VII, large subunit MIS44_07375 PF13742 OB-fold nucleic acid binding domain MIS44_07380 PF01501 Glycosyl transferase family 8 MIS44_07380 PF00535 Glycosyl transferase family 2 MIS44_07385 PF01168 Alanine racemase, N-terminal domain MIS44_07400 PF03109 ABC1 family MIS44_07405 PF17876 Cold shock domain MIS44_07405 PF08461 Ribonuclease R winged-helix domain MIS44_07405 PF08206 Ribonuclease B OB domain MIS44_07405 PF00773 RNB domain MIS44_07405 PF00575 S1 RNA binding domain MIS44_07415 PF01042 Endoribonuclease L-PSP MIS44_07420 PF01717 Cobalamin-independent synthase, Catalytic domain MIS44_07425 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_07430 PF00873 AcrB/AcrD/AcrF family MIS44_07435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MIS44_07450 PF01323 DSBA-like thioredoxin domain MIS44_07455 PF01638 HxlR-like helix-turn-helix MIS44_07465 PF02310 B12 binding domain MIS44_07465 PF02574 Homocysteine S-methyltransferase MIS44_07465 PF02607 B12 binding domain MIS44_07465 PF00809 Pterin binding enzyme MIS44_07465 PF02965 Vitamin B12 dependent methionine synthase, activation domain MIS44_07470 PF08328 Adenylosuccinate lyase C-terminal MIS44_07470 PF00206 Lyase MIS44_07485 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_07495 PF02091 Glycyl-tRNA synthetase alpha subunit MIS44_07505 PF01678 Diaminopimelate epimerase MIS44_07515 PF00580 UvrD/REP helicase N-terminal domain MIS44_07515 PF12705 PD-(D/E)XK nuclease superfamily MIS44_07515 PF13361 UvrD-like helicase C-terminal domain MIS44_07520 PF01027 Inhibitor of apoptosis-promoting Bax1 MIS44_07525 PF00743 Flavin-binding monooxygenase-like MIS44_07530 PF01259 SAICAR synthetase MIS44_07535 PF00132 Bacterial transferase hexapeptide (six repeats) MIS44_07535 PF06426 Serine acetyltransferase, N-terminal MIS44_07545 PF12327 FtsZ family, C-terminal domain MIS44_07545 PF00091 Tubulin/FtsZ family, GTPase domain MIS44_07550 PF02491 SHS2 domain inserted in FTSA MIS44_07555 PF08478 POTRA domain, FtsQ-type MIS44_07555 PF03799 Cell division protein FtsQ MIS44_07560 PF01820 D-ala D-ala ligase N-terminus MIS44_07560 PF07478 D-ala D-ala ligase C-terminus MIS44_07565 PF01225 Mur ligase family, catalytic domain MIS44_07565 PF02875 Mur ligase family, glutamate ligase domain MIS44_07565 PF08245 Mur ligase middle domain MIS44_07570 PF00293 NUDIX domain MIS44_07575 PF12794 Mechanosensitive ion channel inner membrane domain 1 MIS44_07575 PF00924 Mechanosensitive ion channel MIS44_07575 PF12795 Mechanosensitive ion channel porin domain MIS44_07580 PF03129 Anticodon binding domain MIS44_07580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MIS44_07580 PF04073 Aminoacyl-tRNA editing domain MIS44_07590 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS44_07610 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MIS44_07610 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MIS44_07615 PF00303 Thymidylate synthase MIS44_07620 PF07690 Major Facilitator Superfamily MIS44_07625 PF00111 2Fe-2S iron-sulfur cluster binding domain MIS44_07625 PF00175 Oxidoreductase NAD-binding domain MIS44_07625 PF00970 Oxidoreductase FAD-binding domain MIS44_07635 PF00710 Asparaginase, N-terminal MIS44_07635 PF17763 Glutaminase/Asparaginase C-terminal domain MIS44_07645 PF00583 Acetyltransferase (GNAT) family MIS44_07650 PF02254 TrkA-N domain MIS44_07650 PF00999 Sodium/hydrogen exchanger family MIS44_07655 PF00186 Dihydrofolate reductase MIS44_07660 PF04247 Invasion gene expression up-regulator, SirB MIS44_07670 PF00551 Formyl transferase MIS44_07675 PF01177 Asp/Glu/Hydantoin racemase MIS44_07680 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MIS44_07685 PF00271 Helicase conserved C-terminal domain MIS44_07685 PF00270 DEAD/DEAH box helicase MIS44_07690 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) MIS44_07695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MIS44_07695 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region MIS44_07700 PF01773 Na+ dependent nucleoside transporter N-terminus MIS44_07700 PF07662 Na+ dependent nucleoside transporter C-terminus MIS44_07700 PF07670 Nucleoside recognition MIS44_07705 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MIS44_07705 PF02885 Glycosyl transferase family, helical bundle domain MIS44_07705 PF00591 Glycosyl transferase family, a/b domain MIS44_07710 PF01048 Phosphorylase superfamily MIS44_07725 PF00977 Histidine biosynthesis protein MIS44_07730 PF01476 LysM domain MIS44_07730 PF01551 Peptidase family M23 MIS44_07745 PF13520 Amino acid permease MIS44_07750 PF01694 Rhomboid family MIS44_07755 PF00156 Phosphoribosyl transferase domain MIS44_07760 PF13230 Glutamine amidotransferases class-II MIS44_07765 PF02390 Putative methyltransferase MIS44_07770 PF01580 FtsK/SpoIIIE family MIS44_07770 PF09397 Ftsk gamma domain MIS44_07770 PF17854 FtsK alpha domain MIS44_07775 PF06421 GTP-binding protein LepA C-terminus MIS44_07775 PF03144 Elongation factor Tu domain 2 MIS44_07775 PF00009 Elongation factor Tu GTP binding domain MIS44_07775 PF00679 Elongation factor G C-terminus MIS44_07785 PF01548 Transposase MIS44_07785 PF02371 Transposase IS116/IS110/IS902 family MIS44_07805 PF03960 ArsC family MIS44_07810 PF00459 Inositol monophosphatase family MIS44_07815 PF00892 EamA-like transporter family MIS44_07820 PF05872 Bacterial protein of unknown function (DUF853) MIS44_07830 PF01523 Putative modulator of DNA gyrase MIS44_07835 PF04751 Protein of unknown function (DUF615) MIS44_07845 PF06418 CTP synthase N-terminus MIS44_07845 PF00117 Glutamine amidotransferase class-I MIS44_07850 PF00390 Malic enzyme, N-terminal domain MIS44_07850 PF03949 Malic enzyme, NAD binding domain MIS44_07850 PF01515 Phosphate acetyl/butaryl transferase MIS44_07860 PF00117 Glutamine amidotransferase class-I MIS44_07865 PF00977 Histidine biosynthesis protein MIS44_07875 PF01264 Chorismate synthase MIS44_07880 PF01985 CRS1 / YhbY (CRM) domain MIS44_07885 PF01250 Ribosomal protein S6 MIS44_07895 PF01084 Ribosomal protein S18 MIS44_07900 PF01281 Ribosomal protein L9, N-terminal domain MIS44_07900 PF03948 Ribosomal protein L9, C-terminal domain MIS44_07930 PF02470 MlaD protein MIS44_07940 PF01425 Amidase MIS44_07995 PF02686 Glu-tRNAGln amidotransferase C subunit MIS44_08010 PF04093 rod shape-determining protein MreD MIS44_08015 PF00905 Penicillin binding protein transpeptidase domain MIS44_08015 PF03717 Penicillin-binding Protein dimerisation domain MIS44_08020 PF01098 Cell cycle protein MIS44_08025 PF01914 MarC family integral membrane protein MIS44_08035 PF03658 RnfH family Ubiquitin MIS44_08040 PF01195 Peptidyl-tRNA hydrolase MIS44_08045 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MIS44_08065 PF01416 tRNA pseudouridine synthase MIS44_08075 PF18073 Rubredoxin metal binding domain MIS44_08090 PF07690 Major Facilitator Superfamily MIS44_08100 PF16360 GTP-binding GTPase Middle Region MIS44_08100 PF01926 50S ribosome-binding GTPase MIS44_08100 PF13167 GTP-binding GTPase N-terminal MIS44_08110 PF03313 Serine dehydratase alpha chain MIS44_08110 PF03315 Serine dehydratase beta chain MIS44_08115 PF02463 RecF/RecN/SMC N terminal domain MIS44_08115 PF06470 SMC proteins Flexible Hinge Domain MIS44_08120 PF02447 GntP family permease MIS44_08135 PF03449 Transcription elongation factor, N-terminal MIS44_08135 PF01272 Transcription elongation factor, GreA/GreB, C-term MIS44_08145 PF00291 Pyridoxal-phosphate dependent enzyme MIS44_08155 PF11846 Virulence factor membrane-bound polymerase, C-terminal MIS44_08155 PF15864 Protein glycosylation ligase MIS44_08155 PF04932 O-Antigen ligase MIS44_08165 PF01476 LysM domain MIS44_08165 PF01551 Peptidase family M23 MIS44_08165 PF08525 Opacity-associated protein A N-terminal motif MIS44_08185 PF04851 Type III restriction enzyme, res subunit MIS44_08185 PF08774 VRR-NUC domain MIS44_08190 PF18273 Type III R-M EcoP15I C-terminal domain MIS44_08190 PF01555 DNA methylase MIS44_08215 PF00216 Bacterial DNA-binding protein MIS44_08225 PF03840 Preprotein translocase SecG subunit MIS44_08230 PF00121 Triosephosphate isomerase MIS44_08235 PF07743 HSCB C-terminal oligomerisation domain MIS44_08235 PF00226 DnaJ domain MIS44_08240 PF05525 Branched-chain amino acid transport protein MIS44_08245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MIS44_08245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MIS44_08250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MIS44_08265 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MIS44_08265 PF00326 Prolyl oligopeptidase family MIS44_08275 PF05491 RuvB C-terminal winged helix domain MIS44_08275 PF17864 RuvB AAA lid domain MIS44_08275 PF05496 Holliday junction DNA helicase RuvB P-loop domain MIS44_08285 PF04546 Sigma-70, non-essential region MIS44_08285 PF03979 Sigma-70 factor, region 1.1 MIS44_08285 PF04542 Sigma-70 region 2 MIS44_08285 PF04539 Sigma-70 region 3 MIS44_08285 PF04545 Sigma-70, region 4 MIS44_08285 PF00140 Sigma-70 factor, region 1.2 MIS44_08290 PF01370 NAD dependent epimerase/dehydratase family MIS44_08295 PF10672 S-adenosylmethionine-dependent methyltransferase MIS44_08300 PF12833 Helix-turn-helix domain MIS44_08300 PF01965 DJ-1/PfpI family MIS44_08305 PF12627 Probable RNA and SrmB- binding site of polymerase A MIS44_08305 PF01743 Poly A polymerase head domain MIS44_08305 PF01966 HD domain MIS44_08310 PF01717 Cobalamin-independent synthase, Catalytic domain MIS44_08320 PF05191 Adenylate kinase, active site lid MIS44_08330 PF00474 Sodium:solute symporter family MIS44_08335 PF00271 Helicase conserved C-terminal domain MIS44_08335 PF00270 DEAD/DEAH box helicase MIS44_08335 PF17757 UvrB interaction domain MIS44_08335 PF03461 TRCF domain MIS44_08335 PF02559 CarD-like/TRCF domain MIS44_08345 PF12706 Beta-lactamase superfamily domain MIS44_08370 PF00107 Zinc-binding dehydrogenase MIS44_08370 PF08240 Alcohol dehydrogenase GroES-like domain MIS44_08375 PF00756 Putative esterase MIS44_08380 PF00296 Luciferase-like monooxygenase MIS44_08385 PF00107 Zinc-binding dehydrogenase MIS44_08385 PF08240 Alcohol dehydrogenase GroES-like domain MIS44_08390 PF02566 OsmC-like protein MIS44_08395 PF03328 HpcH/HpaI aldolase/citrate lyase family MIS44_08410 PF00881 Nitroreductase family MIS44_08435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MIS44_08440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MIS44_08445 PF00296 Luciferase-like monooxygenase MIS44_08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS44_08450 PF03466 LysR substrate binding domain MIS44_08465 PF01638 HxlR-like helix-turn-helix MIS44_08470 PF13673 Acetyltransferase (GNAT) domain MIS44_08470 PF13302 Acetyltransferase (GNAT) domain MIS44_08470 PF03352 Methyladenine glycosylase MIS44_08470 PF00117 Glutamine amidotransferase class-I MIS44_08470 PF00958 GMP synthase C terminal domain MIS44_08495 PF00162 Phosphoglycerate kinase MIS44_08505 PF02615 Malate/L-lactate dehydrogenase MIS44_08510 PF13356 Arm DNA-binding domain MIS44_08510 PF00589 Phage integrase family MIS44_08515 PF08479 POTRA domain, ShlB-type MIS44_08515 PF17287 POTRA domain MIS44_08515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB MIS44_08520 PF02794 RTX toxin acyltransferase family MIS44_08530 PF04829 Pre-toxin domain with VENN motif MIS44_08530 PF13332 Hemagglutinin repeat MIS44_08530 PF13018 Extended Signal Peptide of Type V secretion system MIS44_08530 PF05860 haemagglutination activity domain MIS44_08610 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB MIS44_08615 PF01381 Helix-turn-helix MIS44_08640 PF06791 Prophage tail length tape measure protein MIS44_08705 PF00574 Clp protease MIS44_08770 PF00436 Single-strand binding protein family MIS44_08810 PF13356 Arm DNA-binding domain MIS44_08810 PF00589 Phage integrase family MIS44_08820 PF00583 Acetyltransferase (GNAT) family MIS44_08825 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_08835 PF02272 DHHA1 domain MIS44_08835 PF01411 tRNA synthetases class II (A) MIS44_08835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MIS44_08840 PF02463 RecF/RecN/SMC N terminal domain MIS44_08850 PF00293 NUDIX domain MIS44_08855 PF16123 Hydroxyacylglutathione hydrolase C-terminus MIS44_08855 PF00753 Metallo-beta-lactamase superfamily MIS44_08865 PF01219 Prokaryotic diacylglycerol kinase MIS44_08875 PF01501 Glycosyl transferase family 8 MIS44_08875 PF00535 Glycosyl transferase family 2 MIS44_08880 PF01040 UbiA prenyltransferase family MIS44_08895 PF00535 Glycosyl transferase family 2 MIS44_08910 PF02397 Bacterial sugar transferase MIS44_08920 PF03883 Peroxide stress protein YaaA MIS44_08925 PF00793 DAHP synthetase I family MIS44_08930 PF01380 SIS domain MIS44_08930 PF00571 CBS domain MIS44_08955 PF12399 Branched-chain amino acid ATP-binding cassette transporter MIS44_08955 PF00005 ABC transporter MIS44_08960 PF04963 Sigma-54 factor, core binding domain MIS44_08960 PF00309 Sigma-54 factor, Activator interacting domain (AID) MIS44_08960 PF04552 Sigma-54, DNA binding domain MIS44_08965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MIS44_08970 PF02527 rRNA small subunit methyltransferase G MIS44_08975 PF13614 AAA domain MIS44_08980 PF00210 Ferritin-like domain MIS44_08985 PF00210 Ferritin-like domain MIS44_08990 PF00701 Dihydrodipicolinate synthetase family MIS44_08995 PF06804 NlpB/DapX lipoprotein MIS44_09005 PF00953 Glycosyl transferase family 4 MIS44_09010 PF02875 Mur ligase family, glutamate ligase domain MIS44_09010 PF01225 Mur ligase family, catalytic domain MIS44_09010 PF08245 Mur ligase middle domain MIS44_09025 PF04198 Putative sugar-binding domain MIS44_09035 PF00294 pfkB family carbohydrate kinase MIS44_09050 PF01791 DeoC/LacD family aldolase MIS44_09055 PF00884 Sulfatase MIS44_09090 PF08245 Mur ligase middle domain MIS44_09090 PF02875 Mur ligase family, glutamate ligase domain MIS44_09090 PF01225 Mur ligase family, catalytic domain MIS44_09105 PF00905 Penicillin binding protein transpeptidase domain MIS44_09105 PF03717 Penicillin-binding Protein dimerisation domain MIS44_09115 PF01795 MraW methylase family MIS44_09120 PF02381 MraZ protein, putative antitoxin-like MIS44_09135 PF00230 Major intrinsic protein MIS44_09140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MIS44_09145 PF07690 Major Facilitator Superfamily MIS44_09150 PF00436 Single-strand binding protein family MIS44_09155 PF01435 Peptidase family M48 MIS44_09175 PF01850 PIN domain MIS44_09185 PF18073 Rubredoxin metal binding domain MIS44_09195 PF01063 Amino-transferase class IV MIS44_09215 PF01029 NusB family MIS44_09215 PF01189 16S rRNA methyltransferase RsmB/F MIS44_09220 PF04055 Radical SAM superfamily MIS44_09220 PF06969 HemN C-terminal domain MIS44_09225 PF13545 Crp-like helix-turn-helix domain MIS44_09225 PF00027 Cyclic nucleotide-binding domain MIS44_09230 PF00486 Transcriptional regulatory protein, C terminal MIS44_09230 PF00072 Response regulator receiver domain MIS44_09235 PF16750 Sensor domain of 2-component histidine kinase MIS44_09235 PF00512 His Kinase A (phospho-acceptor) domain MIS44_09235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_09235 PF00672 HAMP domain MIS44_09240 PF16363 GDP-mannose 4,6 dehydratase MIS44_09245 PF07690 Major Facilitator Superfamily MIS44_09255 PF03193 RsgA GTPase MIS44_09265 PF13439 Glycosyltransferase Family 4 MIS44_09265 PF00534 Glycosyl transferases group 1 MIS44_09280 PF00291 Pyridoxal-phosphate dependent enzyme MIS44_09295 PF01207 Dihydrouridine synthase (Dus) MIS44_09300 PF02719 Polysaccharide biosynthesis protein MIS44_09310 PF02769 AIR synthase related protein, C-terminal domain MIS44_09310 PF00586 AIR synthase related protein, N-terminal domain MIS44_09325 PF00403 Heavy-metal-associated domain MIS44_09330 PF00403 Heavy-metal-associated domain MIS44_09335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MIS44_09335 PF02770 Acyl-CoA dehydrogenase, middle domain MIS44_09335 PF12806 Acetyl-CoA dehydrogenase C-terminal like MIS44_09335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MIS44_09340 PF12805 FUSC-like inner membrane protein yccS MIS44_09345 PF00800 Prephenate dehydratase MIS44_09345 PF01817 Chorismate mutase type II MIS44_09345 PF01842 ACT domain MIS44_09350 PF17676 LD-carboxypeptidase C-terminal domain MIS44_09350 PF02016 LD-carboxypeptidase N-terminal domain MIS44_09410 PF01327 Polypeptide deformylase MIS44_09415 PF01476 LysM domain MIS44_09420 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_09430 PF00501 AMP-binding enzyme MIS44_09430 PF13193 AMP-binding enzyme C-terminal domain MIS44_09445 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MIS44_09445 PF01588 Putative tRNA binding domain MIS44_09445 PF03147 Ferredoxin-fold anticodon binding domain MIS44_09445 PF03484 tRNA synthetase B5 domain MIS44_09445 PF03483 B3/4 domain MIS44_09455 PF01909 Nucleotidyltransferase domain MIS44_09460 PF08780 Nucleotidyltransferase substrate binding protein like MIS44_09465 PF01409 tRNA synthetases class II core domain (F) MIS44_09465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MIS44_09470 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain MIS44_09470 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain MIS44_09475 PF07687 Peptidase dimerisation domain MIS44_09475 PF01546 Peptidase family M20/M25/M40 MIS44_09480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MIS44_09480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MIS44_09480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MIS44_09480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MIS44_09485 PF00768 D-alanyl-D-alanine carboxypeptidase MIS44_09510 PF01048 Phosphorylase superfamily MIS44_09515 PF02664 S-Ribosylhomocysteinase (LuxS) MIS44_09520 PF02082 Transcriptional regulator MIS44_09525 PF00266 Aminotransferase class-V MIS44_09535 PF01592 NifU-like N terminal domain MIS44_09540 PF01521 Iron-sulphur cluster biosynthesis MIS44_09550 PF10518 TAT (twin-arginine translocation) pathway signal sequence MIS44_09550 PF00149 Calcineurin-like phosphoesterase MIS44_09555 PF00768 D-alanyl-D-alanine carboxypeptidase MIS44_09555 PF07943 Penicillin-binding protein 5, C-terminal domain MIS44_09565 PF01551 Peptidase family M23 MIS44_09565 PF01476 LysM domain MIS44_09575 PF17209 Hfq protein MIS44_09580 PF00128 Alpha amylase, catalytic domain MIS44_09585 PF00311 Phosphoenolpyruvate carboxylase MIS44_09590 PF12724 Flavodoxin domain MIS44_09595 PF02447 GntP family permease MIS44_09600 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_09610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MIS44_09610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MIS44_09610 PF06827 Zinc finger found in FPG and IleRS MIS44_09625 PF00270 DEAD/DEAH box helicase MIS44_09625 PF04408 Helicase associated domain (HA2) MIS44_09625 PF00271 Helicase conserved C-terminal domain MIS44_09625 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MIS44_09625 PF11898 Domain of unknown function (DUF3418) MIS44_09630 PF01797 Transposase IS200 like MIS44_09650 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold MIS44_09650 PF00271 Helicase conserved C-terminal domain MIS44_09650 PF04408 Helicase associated domain (HA2) MIS44_09650 PF00270 DEAD/DEAH box helicase MIS44_09650 PF11898 Domain of unknown function (DUF3418) MIS44_09665 PF02595 Glycerate kinase family MIS44_09670 PF01336 OB-fold nucleic acid binding domain MIS44_09670 PF00152 tRNA synthetases class II (D, K and N) MIS44_09670 PF02938 GAD domain MIS44_09690 PF02253 Phospholipase A1 MIS44_09705 PF00005 ABC transporter MIS44_09710 PF02687 FtsX-like permease family MIS44_09710 PF12704 MacB-like periplasmic core domain MIS44_09715 PF03102 NeuB family MIS44_09715 PF08666 SAF domain MIS44_09720 PF02954 Bacterial regulatory protein, Fis family MIS44_09720 PF00158 Sigma-54 interaction domain MIS44_09720 PF00072 Response regulator receiver domain MIS44_09725 PF00989 PAS fold MIS44_09725 PF00512 His Kinase A (phospho-acceptor) domain MIS44_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_09725 PF00672 HAMP domain MIS44_09735 PF01189 16S rRNA methyltransferase RsmB/F MIS44_09735 PF01029 NusB family MIS44_09740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MIS44_09740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS44_09750 PF01258 Prokaryotic dksA/traR C4-type zinc finger MIS44_09760 PF00117 Glutamine amidotransferase class-I MIS44_09760 PF00958 GMP synthase C terminal domain MIS44_09760 PF02540 NAD synthase MIS44_09780 PF00589 Phage integrase family MIS44_09780 PF02899 Phage integrase, N-terminal SAM-like domain MIS44_09825 PF13180 PDZ domain MIS44_09830 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_09835 PF04359 Protein of unknown function (DUF493) MIS44_09840 PF03099 Biotin/lipoate A/B protein ligase family MIS44_09850 PF00106 short chain dehydrogenase MIS44_09865 PF04055 Radical SAM superfamily MIS44_09865 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MIS44_09870 PF12564 Type III restriction/modification enzyme methylation subunit MIS44_09875 PF01555 DNA methylase MIS44_09880 PF04851 Type III restriction enzyme, res subunit MIS44_09885 PF03806 AbgT putative transporter family MIS44_09890 PF00814 Glycoprotease family MIS44_09895 PF01207 Dihydrouridine synthase (Dus) MIS44_09900 PF03466 LysR substrate binding domain MIS44_09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS44_09905 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_09910 PF13416 Bacterial extracellular solute-binding protein MIS44_09915 PF05209 Septum formation inhibitor MinC, N-terminal domain MIS44_09915 PF03775 Septum formation inhibitor MinC, C-terminal domain MIS44_09920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MIS44_09925 PF03776 Septum formation topological specificity factor MinE MIS44_09930 PF03466 LysR substrate binding domain MIS44_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS44_09940 PF00308 Bacterial dnaA protein MIS44_09945 PF02682 Carboxyltransferase domain, subdomain C and D MIS44_09950 PF02626 Carboxyltransferase domain, subdomain A and B MIS44_09955 PF03746 LamB/YcsF family MIS44_09965 PF01566 Natural resistance-associated macrophage protein MIS44_09970 PF05746 DALR anticodon binding domain MIS44_09970 PF02092 Glycyl-tRNA synthetase beta subunit MIS44_10000 PF07922 Glycosyltransferase family 52 MIS44_10005 PF01943 Polysaccharide biosynthesis protein MIS44_10015 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain MIS44_10015 PF00749 tRNA synthetases class I (E and Q), catalytic domain MIS44_10020 PF08207 Elongation factor P (EF-P) KOW-like domain MIS44_10020 PF01132 Elongation factor P (EF-P) OB domain MIS44_10020 PF09285 Elongation factor P, C-terminal MIS44_10090 PF03553 Na+/H+ antiporter family MIS44_10090 PF13726 Na+-H+ antiporter family MIS44_10105 PF03458 UPF0126 domain MIS44_10110 PF12704 MacB-like periplasmic core domain MIS44_10110 PF02687 FtsX-like permease family MIS44_10110 PF00005 ABC transporter MIS44_10140 PF00290 Tryptophan synthase alpha chain MIS44_10145 PF00375 Sodium:dicarboxylate symporter family MIS44_10155 PF04102 SlyX MIS44_10160 PF00293 NUDIX domain MIS44_10180 PF04760 Translation initiation factor IF-2, N-terminal region MIS44_10180 PF11987 Translation-initiation factor 2 MIS44_10180 PF00009 Elongation factor Tu GTP binding domain MIS44_10185 PF08529 NusA N-terminal domain MIS44_10185 PF13184 NusA-like KH domain MIS44_10190 PF17384 RimP C-terminal SH3 domain MIS44_10190 PF02576 RimP N-terminal domain MIS44_10200 PF00085 Thioredoxin MIS44_10205 PF18541 RuvC endonuclease subdomain 3 MIS44_10205 PF13395 HNH endonuclease MIS44_10210 PF01867 CRISPR associated protein Cas1 MIS44_10215 PF09827 CRISPR associated protein Cas2 MIS44_10220 PF17755 UvrA DNA-binding domain MIS44_10220 PF17760 UvrA interaction domain MIS44_10240 PF03462 PCRF domain MIS44_10240 PF00472 RF-1 domain MIS44_10265 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MIS44_10275 PF01475 Ferric uptake regulator family MIS44_10280 PF04355 SmpA / OmlA family MIS44_10285 PF05173 Dihydrodipicolinate reductase, C-terminus MIS44_10285 PF01113 Dihydrodipicolinate reductase, N-terminus MIS44_10290 PF01066 CDP-alcohol phosphatidyltransferase MIS44_10295 PF01268 Formate--tetrahydrofolate ligase MIS44_10305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MIS44_10315 PF07732 Multicopper oxidase MIS44_10320 PF00115 Cytochrome C and Quinol oxidase polypeptide I MIS44_10335 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_10335 PF17871 AAA lid domain MIS44_10335 PF10431 C-terminal, D2-small domain, of ClpB protein MIS44_10335 PF07724 AAA domain (Cdc48 subfamily) MIS44_10345 PF04717 Type VI secretion system, phage-baseplate injector MIS44_10375 PF05736 OprF membrane domain MIS44_10375 PF00691 OmpA family MIS44_10400 PF00239 Resolvase, N terminal domain MIS44_10400 PF02796 Helix-turn-helix domain of resolvase MIS44_10425 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath MIS44_10455 PF04717 Type VI secretion system, phage-baseplate injector MIS44_10490 PF04717 Type VI secretion system, phage-baseplate injector MIS44_10515 PF04717 Type VI secretion system, phage-baseplate injector MIS44_10555 PF00403 Heavy-metal-associated domain MIS44_10560 PF01613 Flavin reductase like domain MIS44_10565 PF00083 Sugar (and other) transporter MIS44_10565 PF08946 Osmosensory transporter coiled coil MIS44_10580 PF01751 Toprim domain MIS44_10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MIS44_10580 PF00986 DNA gyrase B subunit, carboxyl terminus MIS44_10580 PF00204 DNA gyrase B MIS44_10605 PF01554 MatE MIS44_10615 PF06508 Queuosine biosynthesis protein QueC MIS44_10620 PF07690 Major Facilitator Superfamily MIS44_10625 PF00860 Permease family MIS44_10630 PF02566 OsmC-like protein MIS44_10640 PF01145 SPFH domain / Band 7 family MIS44_10640 PF16200 C-terminal region of band_7 MIS44_10645 PF00043 Glutathione S-transferase, C-terminal domain MIS44_10645 PF02798 Glutathione S-transferase, N-terminal domain MIS44_10650 PF04386 Stringent starvation protein B MIS44_10660 PF05164 Cell division protein ZapA MIS44_10670 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MIS44_10670 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MIS44_10685 PF02618 YceG-like family MIS44_10690 PF01197 Ribosomal protein L31 MIS44_10695 PF00444 Ribosomal protein L36 MIS44_10705 PF04261 Dyp-type peroxidase family MIS44_10790 PF04002 RadC-like JAB domain MIS44_10795 PF00005 ABC transporter MIS44_10805 PF01032 FecCD transport family MIS44_10820 PF00490 Delta-aminolevulinic acid dehydratase MIS44_10835 PF00883 Cytosol aminopeptidase family, catalytic domain MIS44_10845 PF05175 Methyltransferase small domain MIS44_10845 PF17827 PrmC N-terminal domain MIS44_10860 PF02348 Cytidylyltransferase MIS44_10865 PF03966 Trm112p-like protein MIS44_10875 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MIS44_10880 PF00483 Nucleotidyl transferase MIS44_10895 PF00899 ThiF family MIS44_10905 PF00753 Metallo-beta-lactamase superfamily MIS44_10910 PF02153 Prephenate dehydrogenase MIS44_10910 PF01842 ACT domain MIS44_10915 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_10920 PF06574 FAD synthetase MIS44_10920 PF01687 Riboflavin kinase MIS44_10925 PF00005 ABC transporter MIS44_10930 PF01047 MarR family MIS44_10935 PF00210 Ferritin-like domain MIS44_10940 PF02566 OsmC-like protein MIS44_10950 PF01032 FecCD transport family MIS44_10960 PF13635 Domain of unknown function (DUF4143) MIS44_10960 PF13173 AAA domain MIS44_10970 PF01032 FecCD transport family MIS44_10980 PF01497 Periplasmic binding protein MIS44_10995 PF00154 recA bacterial DNA recombination protein MIS44_11000 PF00107 Zinc-binding dehydrogenase MIS44_11000 PF08240 Alcohol dehydrogenase GroES-like domain MIS44_11005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MIS44_11005 PF01872 RibD C-terminal domain MIS44_11010 PF04715 Anthranilate synthase component I, N terminal region MIS44_11010 PF00425 chorismate binding enzyme MIS44_11020 PF02545 Maf-like protein MIS44_11035 PF02616 Segregation and condensation protein ScpA MIS44_11045 PF14602 Hexapeptide repeat of succinyl-transferase MIS44_11045 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MIS44_11055 PF13406 Transglycosylase SLT domain MIS44_11060 PF02810 SEC-C motif MIS44_11065 PF01118 Semialdehyde dehydrogenase, NAD binding domain MIS44_11065 PF02774 Semialdehyde dehydrogenase, dimerisation domain MIS44_11075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MIS44_11085 PF08264 Anticodon-binding domain of tRNA MIS44_11085 PF00133 tRNA synthetases class I (I, L, M and V) MIS44_11085 PF13603 Leucyl-tRNA synthetase, Domain 2 MIS44_11085 PF09334 tRNA synthetases class I (M) MIS44_11090 PF01322 Cytochrome C' MIS44_11095 PF00106 short chain dehydrogenase MIS44_11105 PF01578 Cytochrome C assembly protein MIS44_11120 PF09383 NIL domain MIS44_11120 PF00005 ABC transporter MIS44_11125 PF00528 Binding-protein-dependent transport system inner membrane component MIS44_11130 PF03180 NLPA lipoprotein MIS44_11135 PF02678 Pirin MIS44_11135 PF05726 Pirin C-terminal cupin domain MIS44_11140 PF00795 Carbon-nitrogen hydrolase MIS44_11145 PF02540 NAD synthase MIS44_11155 PF03144 Elongation factor Tu domain 2 MIS44_11155 PF00679 Elongation factor G C-terminus MIS44_11155 PF14492 Elongation Factor G, domain II MIS44_11155 PF03764 Elongation factor G, domain IV MIS44_11155 PF00009 Elongation factor Tu GTP binding domain MIS44_11160 PF00177 Ribosomal protein S7p/S5e MIS44_11165 PF00164 Ribosomal protein S12/S23 MIS44_11175 PF00580 UvrD/REP helicase N-terminal domain MIS44_11175 PF13361 UvrD-like helicase C-terminal domain MIS44_11180 PF04324 BFD-like [2Fe-2S] binding domain MIS44_11190 PF01255 Putative undecaprenyl diphosphate synthase MIS44_11200 PF09335 SNARE associated Golgi protein MIS44_11205 PF05193 Peptidase M16 inactive domain MIS44_11205 PF00675 Insulinase (Peptidase family M16) MIS44_11215 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_11220 PF00199 Catalase MIS44_11220 PF06628 Catalase-related immune-responsive MIS44_11225 PF01066 CDP-alcohol phosphatidyltransferase MIS44_11230 PF01209 ubiE/COQ5 methyltransferase family MIS44_11260 PF06965 Na+/H+ antiporter 1 MIS44_11260 PF01343 Peptidase family S49 MIS44_11270 PF01068 ATP dependent DNA ligase domain MIS44_11270 PF14743 DNA ligase OB-like domain MIS44_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MIS44_11275 PF03466 LysR substrate binding domain MIS44_11280 PF01255 Putative undecaprenyl diphosphate synthase MIS44_11285 PF03023 Lipid II flippase MurJ MIS44_11290 PF04361 Protein of unknown function (DUF494) MIS44_11305 PF01131 DNA topoisomerase MIS44_11305 PF01751 Toprim domain MIS44_11305 PF13368 Topoisomerase C-terminal repeat MIS44_11340 PF05992 SbmA/BacA-like family MIS44_11355 PF04715 Anthranilate synthase component I, N terminal region MIS44_11355 PF00425 chorismate binding enzyme MIS44_11400 PF00574 Clp protease MIS44_11405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MIS44_11405 PF05698 Bacterial trigger factor protein (TF) C-terminus MIS44_11405 PF05697 Bacterial trigger factor protein (TF) MIS44_11410 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MIS44_11415 PF00246 Zinc carboxypeptidase MIS44_11415 PF18027 Cytosolic carboxypeptidase N-terminal domain MIS44_11420 PF13533 Biotin-lipoyl like MIS44_11425 PF00107 Zinc-binding dehydrogenase MIS44_11425 PF08240 Alcohol dehydrogenase GroES-like domain MIS44_11430 PF02590 Predicted SPOUT methyltransferase MIS44_11435 PF00691 OmpA family MIS44_11440 PF00462 Glutaredoxin MIS44_11445 PF02556 Preprotein translocase subunit SecB MIS44_11450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MIS44_11455 PF00929 Exonuclease MIS44_11480 PF00004 ATPase family associated with various cellular activities (AAA) MIS44_11480 PF07724 AAA domain (Cdc48 subfamily) MIS44_11480 PF17871 AAA lid domain MIS44_11480 PF02861 Clp amino terminal domain, pathogenicity island component MIS44_11480 PF10431 C-terminal, D2-small domain, of ClpB protein MIS44_11485 PF01765 Ribosome recycling factor MIS44_11490 PF00155 Aminotransferase class I and II MIS44_11510 PF02913 FAD linked oxidases, C-terminal domain MIS44_11510 PF01565 FAD binding domain MIS44_11525 PF00929 Exonuclease MIS44_11530 PF01467 Cytidylyltransferase-like MIS44_11535 PF00484 Carbonic anhydrase MIS44_11540 PF01297 Zinc-uptake complex component A periplasmic MIS44_11545 PF00005 ABC transporter MIS44_11560 PF10531 SLBB domain MIS44_11565 PF00380 Ribosomal protein S9/S16 MIS44_11570 PF00572 Ribosomal protein L13 MIS44_11575 PF00860 Permease family MIS44_11580 PF02222 ATP-grasp domain MIS44_11580 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MIS44_11615 PF05524 PEP-utilising enzyme, N-terminal MIS44_11615 PF00391 PEP-utilising enzyme, mobile domain MIS44_11615 PF02896 PEP-utilising enzyme, TIM barrel domain MIS44_11620 PF00381 PTS HPr component phosphorylation site MIS44_11625 PF07690 Major Facilitator Superfamily MIS44_11645 PF01406 tRNA synthetases class I (C) catalytic domain MIS44_11645 PF09190 DALR domain MIS44_11650 PF00958 GMP synthase C terminal domain MIS44_11650 PF00117 Glutamine amidotransferase class-I MIS44_11655 PF01235 Sodium:alanine symporter family MIS44_11660 PF04362 Bacterial Fe(2+) trafficking MIS44_11665 PF00550 Phosphopantetheine attachment site MIS44_11670 PF00109 Beta-ketoacyl synthase, N-terminal domain MIS44_11670 PF02801 Beta-ketoacyl synthase, C-terminal domain MIS44_11675 PF00224 Pyruvate kinase, barrel domain MIS44_11675 PF02887 Pyruvate kinase, alpha/beta domain MIS44_11685 PF00005 ABC transporter MIS44_11685 PF08402 TOBE domain MIS44_11690 PF00448 SRP54-type protein, GTPase domain MIS44_11690 PF02881 SRP54-type protein, helical bundle domain MIS44_11700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MIS44_11705 PF00782 Dual specificity phosphatase, catalytic domain MIS44_11710 PF10576 Iron-sulfur binding domain of endonuclease III MIS44_11710 PF00633 Helix-hairpin-helix motif MIS44_11710 PF00730 HhH-GPD superfamily base excision DNA repair protein MIS44_11715 PF01165 Ribosomal protein S21 MIS44_11720 PF09424 Yqey-like protein MIS44_11725 PF00012 Hsp70 protein MIS44_11735 PF08245 Mur ligase middle domain MIS44_11735 PF01225 Mur ligase family, catalytic domain MIS44_11735 PF02875 Mur ligase family, glutamate ligase domain MIS44_11740 PF00497 Bacterial extracellular solute-binding proteins, family 3 MIS44_11750 PF02592 Putative vitamin uptake transporter MIS44_11755 PF14489 QueF-like protein MIS44_11760 PF01018 GTP1/OBG MIS44_11760 PF01926 50S ribosome-binding GTPase MIS44_11770 PF04608 Phosphatidylglycerophosphatase A MIS44_11775 PF05958 tRNA (Uracil-5-)-methyltransferase MIS44_11790 PF03169 OPT oligopeptide transporter protein MIS44_11805 PF06940 Domain of unknown function (DUF1287) MIS44_11840 PF01212 Beta-eliminating lyase MIS44_11860 PF09186 Domain of unknown function (DUF1949) MIS44_11860 PF01205 Uncharacterized protein family UPF0029 MIS44_11890 PF14849 YidC periplasmic domain MIS44_11890 PF02096 60Kd inner membrane protein MIS44_11895 PF01809 Putative membrane protein insertion efficiency factor MIS44_11900 PF00825 Ribonuclease P MIS44_11905 PF00468 Ribosomal protein L34