locus-tag class description PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF00119 ATP synthase A chain PF01380 SIS domain PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF08328 Adenylosuccinate lyase C-terminal PF00206 Lyase PF01435 Peptidase family M48 PF03471 Transporter associated domain PF03741 Integral membrane protein TerC family PF01343 Peptidase family S49 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01025 GrpE PF01513 ATP-NAD kinase PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF03364 Polyketide cyclase / dehydrase and lipid transport PF01668 SmpB protein PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF02075 Crossover junction endodeoxyribonuclease RuvC PF00950 ABC 3 transport family PF00005 ABC transporter PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF01566 Natural resistance-associated macrophage protein PF01209 ubiE/COQ5 methyltransferase family PF02096 60Kd inner membrane protein PF14849 YidC periplasmic domain PF03109 ABC1 family PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF02386 Cation transport protein PF12724 Flavodoxin domain PF00468 Ribosomal protein L34 PF00155 Aminotransferase class I and II PF00753 Metallo-beta-lactamase superfamily PF00749 tRNA synthetases class I (E and Q), catalytic domain PF01040 UbiA prenyltransferase family PF01553 Acyltransferase PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF03023 Lipid II flippase MurJ PF01180 Dihydroorotate dehydrogenase PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF00490 Delta-aminolevulinic acid dehydratase PF01177 Asp/Glu/Hydantoin racemase PF13091 PLD-like domain PF01384 Phosphate transporter family PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF14437 MafB19-like deaminase PF00380 Ribosomal protein S9/S16 PF00572 Ribosomal protein L13 PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF18053 DNA gyrase B subunit insert domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF03969 AFG1-like ATPase PF06295 Protein of unknown function (DUF1043) PF00595 PDZ domain PF13180 PDZ domain PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00348 Polyprenyl synthetase PF02558 Ketopantoate reductase PanE/ApbA PF08546 Ketopantoate reductase PanE/ApbA C terminal PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF06481 COX Aromatic Rich Motif PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF01040 UbiA prenyltransferase family PF13145 PPIC-type PPIASE domain PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00574 Clp protease PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF07690 Major Facilitator Superfamily PF02445 Quinolinate synthetase A protein PF00535 Glycosyl transferase family 2 PF01370 NAD dependent epimerase/dehydratase family PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF09312 SurA N-terminal domain PF01522 Polysaccharide deacetylase PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase PF03652 Holliday junction resolvase PF02622 Uncharacterized ACR, COG1678 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF04452 RNA methyltransferase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF14840 Processivity clamp loader gamma complex DNA pol III C-term PF06144 DNA polymerase III, delta subunit PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF01467 Cytidylyltransferase-like PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF01098 Cell cycle protein PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF03099 Biotin/lipoate A/B protein ligase family PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF00313 'Cold-shock' DNA-binding domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF00709 Adenylosuccinate synthetase PF07085 DRTGG domain PF01515 Phosphate acetyl/butaryl transferase PF00398 Ribosomal RNA adenine dimethylase PF00871 Acetokinase family PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF17209 Hfq protein PF01145 SPFH domain / Band 7 family PF12221 Bacterial membrane protein N terminal PF01145 SPFH domain / Band 7 family PF07690 Major Facilitator Superfamily PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00137 ATP synthase subunit C PF00149 Calcineurin-like phosphoesterase PF00497 Bacterial extracellular solute-binding proteins, family 3 PF03884 DNA gyrase inhibitor YacG PF01121 Dephospho-CoA kinase PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF10502 Signal peptidase, peptidase S26 PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF01648 4'-phosphopantetheinyl transferase superfamily PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF00186 Dihydrofolate reductase PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF02491 SHS2 domain inserted in FTSA PF03799 Cell division protein FtsQ PF08478 POTRA domain, FtsQ-type PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF01098 Cell cycle protein PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF04999 Cell division protein FtsL PF01795 MraW methylase family PF00210 Ferritin-like domain PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF00300 Histidine phosphatase superfamily (branch 1) PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF03880 DbpA RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF00312 Ribosomal protein S15 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF01509 TruB family pseudouridylate synthase (N terminal domain) PF02033 Ribosome-binding factor A PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF08364 Bacterial translation initiation factor IF-2 associated region PF04760 Translation initiation factor IF-2, N-terminal region PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF03840 Preprotein translocase SecG subunit PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00809 Pterin binding enzyme PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00154 recA bacterial DNA recombination protein PF00793 DAHP synthetase I family PF01594 AI-2E family transporter PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF01176 Translation initiation factor 1A / IF-1 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF00149 Calcineurin-like phosphoesterase PF00731 AIR carboxylase PF00164 Ribosomal protein S12/S23 PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF04262 Glutamate-cysteine ligase PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF00886 Ribosomal protein S16 PF01245 Ribosomal protein L19 PF02348 Cytidylyltransferase PF03966 Trm112p-like protein PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF02699 Preprotein translocase subunit PF00177 Ribosomal protein S7p/S5e PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF01323 DSBA-like thioredoxin domain PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01084 Ribosomal protein S18 PF01250 Ribosomal protein S6 PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF17946 RecC C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01678 Diaminopimelate epimerase PF13419 Haloacid dehalogenase-like hydrolase PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01544 CorA-like Mg2+ transporter protein PF00121 Triosephosphate isomerase PF00970 Oxidoreductase FAD-binding domain PF00175 Oxidoreductase NAD-binding domain PF05247 Flagellar transcriptional activator (FlhD) PF07690 Major Facilitator Superfamily PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF00227 Proteasome subunit PF01197 Ribosomal protein L31 PF00005 ABC transporter PF01061 ABC-2 type transporter PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF03167 Uracil DNA glycosylase superfamily PF00266 Aminotransferase class-V PF00459 Inositol monophosphatase family PF00430 ATP synthase B/B' CF(0) PF05280 Flagellar transcriptional activator (FlhC) PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF00749 tRNA synthetases class I (E and Q), catalytic domain PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF01467 Cytidylyltransferase-like PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF02222 ATP-grasp domain PF02401 LytB protein PF01252 Signal peptidase (SPase) II PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF06827 Zinc finger found in FPG and IleRS PF06574 FAD synthetase PF01687 Riboflavin kinase PF01618 MotA/TolQ/ExbB proton channel family PF01649 Ribosomal protein S20 PF06965 Na+/H+ antiporter 1 PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF00012 Hsp70 protein PF07977 FabA-like domain PF01106 NifU-like domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF07498 Rho termination factor, N-terminal domain PF07497 Rho termination factor, RNA-binding domain PF00085 Thioredoxin PF00162 Phosphoglycerate kinase PF01116 Fructose-bisphosphate aldolase class-II PF01975 Survival protein SurE PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF11890 Domain of unknown function (DUF3410) PF01416 tRNA pseudouridine synthase PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01312 FlhB HrpN YscU SpaS Family PF00156 Phosphoribosyl transferase domain PF02441 Flavoprotein PF01066 CDP-alcohol phosphatidyltransferase PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF01227 GTP cyclohydrolase I PF08543 Phosphomethylpyrimidine kinase PF01790 Prolipoprotein diacylglyceryl transferase PF00771 FHIPEP family PF00303 Thymidylate synthase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF17831 Pyruvate dehydrogenase E1 component middle domain PF00456 Transketolase, thiamine diphosphate binding domain PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF06835 Lipopolysaccharide-assembly, LptC-related PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00571 CBS domain PF01380 SIS domain PF01722 BolA-like protein PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF01259 SAICAR synthetase PF00701 Dihydrodipicolinate synthetase family PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00677 Lumazine binding domain PF00462 Glutaredoxin PF00929 Exonuclease PF01047 MarR family PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF01243 Pyridoxamine 5'-phosphate oxidase PF00579 tRNA synthetases class I (W and Y) PF13144 Chaperone for flagella basal body P-ring formation PF17656 FlgA N-terminal domain PF10576 Iron-sulfur binding domain of endonuclease III PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF13091 PLD-like domain PF10415 Fumarase C C-terminus PF00206 Lyase PF02540 NAD synthase PF00793 DAHP synthetase I family PF13847 Methyltransferase domain PF17827 PrmC N-terminal domain PF03462 PCRF domain PF00472 RF-1 domain PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF03550 Outer membrane lipoprotein LolB PF00288 GHMP kinases N terminal domain PF00460 Flagella basal body rod protein PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF01195 Peptidyl-tRNA hydrolase PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF17969 L,D-transpeptidase C-terminal domain PF03734 L,D-transpeptidase catalytic domain PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF02657 Fe-S metabolism associated domain PF00266 Aminotransferase class-V PF01458 Uncharacterized protein family (UPF0051) PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00005 ABC transporter PF01458 Uncharacterized protein family (UPF0051) PF01521 Iron-sulphur cluster biosynthesis PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF00925 GTP cyclohydrolase II PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF00816 H-NS histone family PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF03963 Flagellar hook capping protein - N-terminal region PF13860 FlgD Ig-like domain PF13861 FlgD Tudor-like domain PF00483 Nucleotidyl transferase PF01842 ACT domain PF00551 Formyl transferase PF03372 Endonuclease/Exonuclease/phosphatase family PF03776 Septum formation topological specificity factor MinE PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03775 Septum formation inhibitor MinC, C-terminal domain PF05209 Septum formation inhibitor MinC, N-terminal domain PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF03471 Transporter associated domain PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF00213 ATP synthase delta (OSCP) subunit PF07559 Flagellar basal body protein FlaE PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF02684 Lipid-A-disaccharide synthetase PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF00132 Bacterial transferase hexapeptide (six repeats) PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF03938 Outer membrane protein (OmpH-like) PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF17820 PDZ domain PF02163 Peptidase family M50 PF01255 Putative undecaprenyl diphosphate synthase PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF01765 Ribosome recycling factor PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF00557 Metallopeptidase family M24 PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF10415 Fumarase C C-terminus PF00206 Lyase PF03091 CutA1 divalent ion tolerance protein PF01914 MarC family integral membrane protein PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF01432 Peptidase family M3 PF01171 PP-loop family PF09179 TilS substrate binding domain PF00156 Phosphoribosyl transferase domain PF00692 dUTPase PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF00830 Ribosomal L28 family PF00471 Ribosomal protein L33 PF01192 RNA polymerase Rpb6 PF00625 Guanylate kinase PF01047 MarR family PF02107 Flagellar L-ring protein PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF05175 Methyltransferase small domain PF00691 OmpA family PF07676 WD40-like Beta Propeller Repeat PF04052 TolB amino-terminal domain PF02472 Biopolymer transport protein ExbD/TolR PF01618 MotA/TolQ/ExbB proton channel family PF02629 CoA binding domain PF00549 CoA-ligase PF02119 Flagellar P-ring protein PF08442 ATP-grasp domain PF00549 CoA-ligase PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF16078 2-oxoglutarate dehydrogenase N-terminus PF00676 Dehydrogenase E1 component PF16870 2-oxoglutarate dehydrogenase C-terminal PF02779 Transketolase, pyrimidine binding domain PF13085 2Fe-2S iron-sulfur cluster binding domain PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF01784 NIF3 (NGG1p interacting factor 3) PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00258 Flavodoxin PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF02666 Phosphatidylserine decarboxylase PF00929 Exonuclease PF09335 SNARE associated Golgi protein PF01494 FAD binding domain PF05195 Aminopeptidase P, N-terminal domain PF00557 Metallopeptidase family M24 PF05164 Cell division protein ZapA PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF14850 DNA-binding domain of Proline dehydrogenase PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF12826 Helix-hairpin-helix motif PF01048 Phosphorylase superfamily PF01571 Aminomethyltransferase folate-binding domain PF03937 Flavinator of succinate dehydrogenase PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF03462 PCRF domain PF00472 RF-1 domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF01914 MarC family integral membrane protein PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF01311 Bacterial export proteins, family 1 PF00795 Carbon-nitrogen hydrolase PF02130 Uncharacterized protein family UPF0054 PF02569 Pantoate-beta-alanine ligase PF02548 Ketopantoate hydroxymethyltransferase PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF04972 BON domain PF00202 Aminotransferase class-III PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF00155 Aminotransferase class I and II PF08241 Methyltransferase domain PF01313 Bacterial export proteins, family 3 PF03739 Lipopolysaccharide export system permease LptF/LptG PF03739 Lipopolysaccharide export system permease LptF/LptG PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF00885 6,7-dimethyl-8-ribityllumazine synthase PF01029 NusB family PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00813 FliP family PF04608 Phosphatidylglycerophosphatase A PF04546 Sigma-70, non-essential region PF03979 Sigma-70 factor, region 1.1 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF10410 DnaB-helicase binding domain of primase PF08278 DNA primase DnaG DnaB-binding PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF01165 Ribosomal protein S21 PF00814 Glycoprotease family PF02152 Dihydroneopterin aldolase PF02673 Bacitracin resistance protein BacA PF01494 FAD binding domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF04347 Flagellar biosynthesis protein, FliO PF00813 FliP family PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF01016 Ribosomal L27 protein PF00829 Ribosomal prokaryotic L21 protein PF00348 Polyprenyl synthetase PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF00719 Inorganic pyrophosphatase PF04357 TamB, inner membrane protein subunit of TAM complex PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF17243 POTRA domain TamA domain 1 PF00575 S1 RNA binding domain PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF02224 Cytidylate kinase PF00266 Aminotransferase class-V PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF05525 Branched-chain amino acid transport protein PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF03548 Outer membrane lipoprotein carrier protein LolA PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02080 TrkA-C domain PF02254 TrkA-N domain PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF01327 Polypeptide deformylase PF01300 Telomere recombination PF01553 Acyltransferase PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF00436 Single-strand binding protein family PF00464 Serine hydroxymethyltransferase PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF08755 Hemimethylated DNA-binding protein YccV like PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF03748 Flagellar basal body-associated protein FliL PF05690 Thiazole biosynthesis protein ThiG PF02581 Thiamine monophosphate synthase PF13667 ThiC-associated domain PF01964 Radical SAM ThiC family PF01208 Uroporphyrinogen decarboxylase (URO-D) PF00216 Bacterial DNA-binding protein PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF08279 HTH domain PF00485 Phosphoribulokinase / Uridine kinase family PF02120 Flagellar hook-length control protein FliK PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF00467 KOW motif PF02357 Transcription termination factor nusG PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00687 Ribosomal protein L1p/L10e family PF00466 Ribosomal protein L10 PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF05321 Haemolysin expression modulating protein PF12169 DNA polymerase III subunits gamma and tau domain III PF02575 YbaB/EbfC DNA-binding family PF00183 Hsp90 protein PF00762 Ferrochelatase PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF18269 T3SS EscN ATPase C-terminal domain PF01027 Inhibitor of apoptosis-promoting Bax1 PF02542 YgbB family PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF04977 Septum formation initiator PF13525 Outer membrane lipoprotein PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF09334 tRNA synthetases class I (M) PF00692 dUTPase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF02108 Flagellar assembly protein FliH PF00462 Glutaredoxin PF00581 Rhodanese-like domain PF00338 Ribosomal protein S10p/S20e PF00297 Ribosomal protein L3 PF00573 Ribosomal protein L4/L1 family PF00276 Ribosomal protein L23 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00203 Ribosomal protein S19 PF00237 Ribosomal protein L22p/L17e PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF01706 FliG C-terminal domain PF14841 FliG middle domain PF14842 FliG N-terminal domain PF00252 Ribosomal protein L16p/L10e PF00831 Ribosomal L29 protein PF00366 Ribosomal protein S17 PF00238 Ribosomal protein L14p/L23e PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00253 Ribosomal protein S14p/S29e PF00410 Ribosomal protein S8 PF00347 Ribosomal protein L6 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF01514 Secretory protein of YscJ/FliF family PF08345 Flagellar M-ring protein C-terminal PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF00327 Ribosomal protein L30p/L7e PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00344 SecY translocase PF00444 Ribosomal protein L36 PF00416 Ribosomal protein S13/S18 PF00411 Ribosomal protein S11 PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF01196 Ribosomal protein L17 PF00231 ATP synthase PF02049 Flagellar hook-basal body complex protein FliE PF00334 Nucleoside diphosphate kinase PF04055 Radical SAM superfamily PF13464 Domain of unknown function (DUF4115) PF04551 GcpE protein PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF09976 Tetratricopeptide repeat-like domain PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF01293 Phosphoenolpyruvate carboxykinase PF01202 Shikimate kinase PF00834 Ribulose-phosphate 3 epimerase family PF00579 tRNA synthetases class I (W and Y) PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF00923 Transaldolase/Fructose-6-phosphate aldolase PF01218 Coproporphyrinogen III oxidase PF00561 alpha/beta hydrolase fold PF00893 Small Multidrug Resistance protein PF07195 Flagellar hook-associated protein 2 C-terminus PF02465 Flagellar hook-associated protein 2 N-terminus PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF04307 LexA-binding, inner membrane-associated putative hydrolase PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain PF00696 Amino acid kinase family PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF02091 Glycyl-tRNA synthetase alpha subunit PF05746 DALR anticodon binding domain PF02092 Glycyl-tRNA synthetase beta subunit PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF14814 Bifunctional transglycosylase second domain PF00700 Bacterial flagellin C-terminal helical region PF00669 Bacterial flagellin N-terminal helical region PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF00342 Phosphoglucose isomerase PF04093 rod shape-determining protein MreD PF04085 rod shape-determining protein MreC PF00364 Biotin-requiring enzyme PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00581 Rhodanese-like domain PF12368 Rhodanase C-terminal PF17773 UPF0176 acylphosphatase like domain PF06039 Malate:quinone oxidoreductase (Mqo) PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF08340 Domain of unknown function (DUF1732) PF03755 YicC-like family, N-terminal region PF02705 K+ potassium transporter PF00268 Ribonucleotide reductase, small chain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF08343 Ribonucleotide reductase N-terminal PF00535 Glycosyl transferase family 2 PF07972 NrdI Flavodoxin like PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF00075 RNase H PF00929 Exonuclease PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF00202 Aminotransferase class-III PF01521 Iron-sulphur cluster biosynthesis PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain PF01464 Transglycosylase SLT domain PF04362 Bacterial Fe(2+) trafficking PF06969 HemN C-terminal domain PF01725 Ham1 family PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF01168 Alanine racemase, N-terminal domain PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF01632 Ribosomal protein L35 PF00453 Ribosomal protein L20 PF01409 tRNA synthetases class II core domain (F) PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF01979 Amidohydrolase family PF12111 Polyribonucleotide phosphorylase C terminal PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF01783 Ribosomal L32p protein family PF00698 Acyl transferase domain PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF12804 MobA-like NTP transferase domain PF00550 Phosphopantetheine attachment site PF02618 YceG-like family PF02223 Thymidylate kinase PF09115 DNA polymerase III, delta subunit, C terminal PF01026 TatD related DNase PF01230 HIT domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain