locus-tag class description L3551_00005 PF00308 Bacterial dnaA protein L3551_00005 PF08299 Bacterial dnaA protein helix-turn-helix L3551_00005 PF11638 DnaA N-terminal domain L3551_00010 PF07549 SecD/SecF GG Motif L3551_00010 PF02355 Protein export membrane protein L3551_00025 PF02096 60Kd inner membrane protein L3551_00025 PF14849 YidC periplasmic domain L3551_00030 PF00885 6,7-dimethyl-8-ribityllumazine synthase L3551_00035 PF01029 NusB family L3551_00045 PF00692 dUTPase L3551_00060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00070 PF00578 AhpC/TSA family L3551_00070 PF10417 C-terminal domain of 1-Cys peroxiredoxin L3551_00075 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_00090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00150 PF03109 ABC1 family L3551_00155 PF00005 ABC transporter L3551_00160 PF01297 Zinc-uptake complex component A periplasmic L3551_00170 PF00471 Ribosomal protein L33 L3551_00175 PF12111 Polyribonucleotide phosphorylase C terminal L3551_00175 PF10150 Ribonuclease E/G family L3551_00175 PF00575 S1 RNA binding domain L3551_00180 PF00012 Hsp70 protein L3551_00185 PF01722 BolA-like protein L3551_00190 PF01053 Cys/Met metabolism PLP-dependent enzyme L3551_00195 PF02875 Mur ligase family, glutamate ligase domain L3551_00195 PF08245 Mur ligase middle domain L3551_00210 PF01300 Telomere recombination L3551_00215 PF12169 DNA polymerase III subunits gamma and tau domain III L3551_00230 PF13244 Domain of unknown function (DUF4040) L3551_00230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L3551_00230 PF00361 Proton-conducting membrane transporter L3551_00235 PF03796 DnaB-like helicase C terminal domain L3551_00235 PF00772 DnaB-like helicase N terminal domain L3551_00245 PF06271 RDD family L3551_00265 PF01979 Amidohydrolase family L3551_00270 PF01612 3'-5' exonuclease L3551_00270 PF00570 HRDC domain L3551_00275 PF01121 Dephospho-CoA kinase L3551_00300 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00345 PF00268 Ribonucleotide reductase, small chain L3551_00360 PF08264 Anticodon-binding domain of tRNA L3551_00360 PF09334 tRNA synthetases class I (M) L3551_00365 PF01527 Transposase L3551_00370 PF13276 HTH-like domain L3551_00370 PF00665 Integrase core domain L3551_00370 PF13333 Integrase core domain L3551_00385 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00425 PF00902 Sec-independent protein translocase protein (TatC) L3551_00430 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L3551_00430 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L3551_00460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00485 PF13735 tRNA nucleotidyltransferase domain 2 putative L3551_00485 PF12627 Probable RNA and SrmB- binding site of polymerase A L3551_00485 PF01743 Poly A polymerase head domain L3551_00490 PF03144 Elongation factor Tu domain 2 L3551_00490 PF00009 Elongation factor Tu GTP binding domain L3551_00490 PF00679 Elongation factor G C-terminus L3551_00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain L3551_00510 PF00950 ABC 3 transport family L3551_00520 PF08544 GHMP kinases C terminal L3551_00520 PF00288 GHMP kinases N terminal domain L3551_00525 PF00580 UvrD/REP helicase N-terminal domain L3551_00525 PF13361 UvrD-like helicase C-terminal domain L3551_00525 PF12705 PD-(D/E)XK nuclease superfamily L3551_00530 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00560 PF03918 Cytochrome C biogenesis protein L3551_00570 PF00111 2Fe-2S iron-sulfur cluster binding domain L3551_00580 PF00684 DnaJ central domain L3551_00580 PF01556 DnaJ C terminal domain L3551_00580 PF00226 DnaJ domain L3551_00590 PF01807 CHC2 zinc finger L3551_00590 PF13662 Toprim domain L3551_00590 PF08275 DNA primase catalytic core, N-terminal domain L3551_00595 PF08241 Methyltransferase domain L3551_00605 PF00814 Glycoprotease family L3551_00630 PF01258 Prokaryotic dksA/traR C4-type zinc finger L3551_00655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00670 PF01225 Mur ligase family, catalytic domain L3551_00670 PF02875 Mur ligase family, glutamate ligase domain L3551_00670 PF08245 Mur ligase middle domain L3551_00675 PF03330 Lytic transglycolase L3551_00685 PF01494 FAD binding domain L3551_00700 PF01467 Cytidylyltransferase-like L3551_00715 PF01255 Putative undecaprenyl diphosphate synthase L3551_00725 PF02817 e3 binding domain L3551_00725 PF00364 Biotin-requiring enzyme L3551_00725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3551_00730 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00770 PF01926 50S ribosome-binding GTPase L3551_00770 PF06071 Protein of unknown function (DUF933) L3551_00785 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded L3551_00800 PF00005 ABC transporter L3551_00805 PF02416 mttA/Hcf106 family L3551_00815 PF06055 Exopolysaccharide synthesis, ExoD L3551_00820 PF01406 tRNA synthetases class I (C) catalytic domain L3551_00820 PF09190 DALR domain L3551_00830 PF00075 RNase H L3551_00835 PF01040 UbiA prenyltransferase family L3551_00840 PF00115 Cytochrome C and Quinol oxidase polypeptide I L3551_00845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain L3551_00845 PF02790 Cytochrome C oxidase subunit II, transmembrane domain L3551_00850 PF00529 HlyD membrane-fusion protein of T1SS L3551_00850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L3551_00855 PF03653 Uncharacterised protein family (UPF0093) L3551_00860 PF00676 Dehydrogenase E1 component L3551_00865 PF02934 GatB/GatE catalytic domain L3551_00865 PF02637 GatB domain L3551_00880 PF00589 Phage integrase family L3551_00880 PF02899 Phage integrase, N-terminal SAM-like domain L3551_00885 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_00885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L3551_00895 PF00115 Cytochrome C and Quinol oxidase polypeptide I L3551_00905 PF08264 Anticodon-binding domain of tRNA L3551_00905 PF00133 tRNA synthetases class I (I, L, M and V) L3551_00930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family L3551_00955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_00980 PF01113 Dihydrodipicolinate reductase, N-terminus L3551_00980 PF05173 Dihydrodipicolinate reductase, C-terminus L3551_00985 PF00005 ABC transporter L3551_01010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase L3551_01010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain L3551_01010 PF13288 DXP reductoisomerase C-terminal domain L3551_01025 PF01527 Transposase L3551_01035 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01050 PF13276 HTH-like domain L3551_01050 PF13333 Integrase core domain L3551_01050 PF00665 Integrase core domain L3551_01060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3551_01060 PF03129 Anticodon binding domain L3551_01065 PF01648 4'-phosphopantetheinyl transferase superfamily L3551_01090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01120 PF01235 Sodium:alanine symporter family L3551_01135 PF02545 Maf-like protein L3551_01140 PF01176 Translation initiation factor 1A / IF-1 L3551_01150 PF00709 Adenylosuccinate synthetase L3551_01160 PF00696 Amino acid kinase family L3551_01165 PF01926 50S ribosome-binding GTPase L3551_01170 PF03462 PCRF domain L3551_01170 PF00472 RF-1 domain L3551_01210 PF07690 Major Facilitator Superfamily L3551_01230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01240 PF04551 GcpE protein L3551_01255 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01285 PF13491 4TM region of DNA translocase FtsK/SpoIIIE L3551_01285 PF17854 FtsK alpha domain L3551_01285 PF09397 Ftsk gamma domain L3551_01285 PF01580 FtsK/SpoIIIE family L3551_01290 PF02325 YGGT family L3551_01295 PF01527 Transposase L3551_01300 PF00665 Integrase core domain L3551_01300 PF13276 HTH-like domain L3551_01300 PF13333 Integrase core domain L3551_01310 PF13276 HTH-like domain L3551_01310 PF00665 Integrase core domain L3551_01310 PF13333 Integrase core domain L3551_01325 PF13276 HTH-like domain L3551_01325 PF13333 Integrase core domain L3551_01325 PF00665 Integrase core domain L3551_01330 PF01527 Transposase L3551_01335 PF01018 GTP1/OBG L3551_01335 PF01926 50S ribosome-binding GTPase L3551_01340 PF00113 Enolase, C-terminal TIM barrel domain L3551_01340 PF03952 Enolase, N-terminal domain L3551_01350 PF08245 Mur ligase middle domain L3551_01350 PF01225 Mur ligase family, catalytic domain L3551_01350 PF02875 Mur ligase family, glutamate ligase domain L3551_01355 PF02104 SURF1 family L3551_01360 PF00210 Ferritin-like domain L3551_01390 PF10415 Fumarase C C-terminus L3551_01390 PF00206 Lyase L3551_01405 PF00586 AIR synthase related protein, N-terminal domain L3551_01405 PF02769 AIR synthase related protein, C-terminal domain L3551_01405 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain L3551_01425 PF00684 DnaJ central domain L3551_01425 PF00226 DnaJ domain L3551_01425 PF01556 DnaJ C terminal domain L3551_01430 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain L3551_01430 PF17770 Ribonuclease J C-terminal domain L3551_01430 PF12706 Beta-lactamase superfamily domain L3551_01435 PF07676 WD40-like Beta Propeller Repeat L3551_01445 PF02686 Glu-tRNAGln amidotransferase C subunit L3551_01450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase L3551_01450 PF14572 Phosphoribosyl synthetase-associated domain L3551_01455 PF02780 Transketolase, C-terminal domain L3551_01455 PF02779 Transketolase, pyrimidine binding domain L3551_01455 PF00456 Transketolase, thiamine diphosphate binding domain L3551_01460 PF00163 Ribosomal protein S4/S9 N-terminal domain L3551_01460 PF01479 S4 domain L3551_01470 PF04384 Iron-sulphur cluster assembly L3551_01480 PF00830 Ribosomal L28 family L3551_01485 PF04055 Radical SAM superfamily L3551_01485 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family L3551_01505 PF17755 UvrA DNA-binding domain L3551_01505 PF17760 UvrA interaction domain L3551_01515 PF00364 Biotin-requiring enzyme L3551_01515 PF02779 Transketolase, pyrimidine binding domain L3551_01515 PF02780 Transketolase, C-terminal domain L3551_01525 PF10502 Signal peptidase, peptidase S26 L3551_01530 PF00012 Hsp70 protein L3551_01535 PF00226 DnaJ domain L3551_01535 PF07743 HSCB C-terminal oligomerisation domain L3551_01540 PF01521 Iron-sulphur cluster biosynthesis L3551_01545 PF01592 NifU-like N terminal domain L3551_01550 PF00448 SRP54-type protein, GTPase domain L3551_01550 PF02881 SRP54-type protein, helical bundle domain L3551_01575 PF01571 Aminomethyltransferase folate-binding domain L3551_01580 PF00166 Chaperonin 10 Kd subunit L3551_01585 PF00118 TCP-1/cpn60 chaperonin family L3551_01600 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01615 PF18073 Rubredoxin metal binding domain L3551_01620 PF07690 Major Facilitator Superfamily L3551_01620 PF00083 Sugar (and other) transporter L3551_01625 PF13368 Topoisomerase C-terminal repeat L3551_01625 PF01751 Toprim domain L3551_01625 PF01131 DNA topoisomerase L3551_01625 PF01396 Topoisomerase DNA binding C4 zinc finger L3551_01635 PF02534 Type IV secretory system Conjugative DNA transfer L3551_01640 PF00437 Type II/IV secretion system protein L3551_01655 PF04335 VirB8 protein L3551_01660 PF00925 GTP cyclohydrolase II L3551_01690 PF00692 dUTPase L3551_01695 PF02386 Cation transport protein L3551_01710 PF01765 Ribosome recycling factor L3551_01715 PF00696 Amino acid kinase family L3551_01720 PF00889 Elongation factor TS L3551_01725 PF00318 Ribosomal protein S2 L3551_01735 PF02699 Preprotein translocase subunit L3551_01740 PF01380 SIS domain L3551_01760 PF00132 Bacterial transferase hexapeptide (six repeats) L3551_01760 PF00101 Ribulose bisphosphate carboxylase, small chain L3551_01770 PF00117 Glutamine amidotransferase class-I L3551_01770 PF06418 CTP synthase N-terminus L3551_01780 PF14437 MafB19-like deaminase L3551_01790 PF00005 ABC transporter L3551_01795 PF05746 DALR anticodon binding domain L3551_01795 PF03485 Arginyl tRNA synthetase N terminal domain L3551_01795 PF00750 tRNA synthetases class I (R) L3551_01810 PF00005 ABC transporter L3551_01810 PF00664 ABC transporter transmembrane region L3551_01815 PF01209 ubiE/COQ5 methyltransferase family L3551_01820 PF07690 Major Facilitator Superfamily L3551_01840 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01860 PF00462 Glutaredoxin L3551_01870 PF00390 Malic enzyme, N-terminal domain L3551_01870 PF03949 Malic enzyme, NAD binding domain L3551_01870 PF01515 Phosphate acetyl/butaryl transferase L3551_01875 PF01066 CDP-alcohol phosphatidyltransferase L3551_01890 PF01709 Transcriptional regulator L3551_01895 PF01551 Peptidase family M23 L3551_01895 PF01476 LysM domain L3551_01895 PF08525 Opacity-associated protein A N-terminal motif L3551_01925 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_01945 PF00529 HlyD membrane-fusion protein of T1SS L3551_01945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L3551_01975 PF00391 PEP-utilising enzyme, mobile domain L3551_01975 PF02896 PEP-utilising enzyme, TIM barrel domain L3551_01975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain L3551_01980 PF04002 RadC-like JAB domain L3551_02090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L3551_02090 PF00925 GTP cyclohydrolase II L3551_02095 PF03449 Transcription elongation factor, N-terminal L3551_02095 PF01272 Transcription elongation factor, GreA/GreB, C-term L3551_02100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3551_02100 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3551_02100 PF00306 ATP synthase alpha/beta chain, C terminal domain L3551_02105 PF00213 ATP synthase delta (OSCP) subunit L3551_02110 PF02021 Uncharacterised protein family UPF0102 L3551_02115 PF01196 Ribosomal protein L17 L3551_02120 PF01000 RNA polymerase Rpb3/RpoA insert domain L3551_02120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain L3551_02120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain L3551_02125 PF00411 Ribosomal protein S11 L3551_02130 PF00416 Ribosomal protein S13/S18 L3551_02140 PF00344 SecY translocase L3551_02145 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A L3551_02150 PF03719 Ribosomal protein S5, C-terminal domain L3551_02150 PF00333 Ribosomal protein S5, N-terminal domain L3551_02155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast L3551_02160 PF00347 Ribosomal protein L6 L3551_02165 PF00410 Ribosomal protein S8 L3551_02170 PF00253 Ribosomal protein S14p/S29e L3551_02175 PF00281 Ribosomal protein L5 L3551_02175 PF00673 ribosomal L5P family C-terminus L3551_02180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 L3551_02185 PF00238 Ribosomal protein L14p/L23e L3551_02190 PF00366 Ribosomal protein S17 L3551_02195 PF00831 Ribosomal L29 protein L3551_02200 PF00252 Ribosomal protein L16p/L10e L3551_02205 PF00189 Ribosomal protein S3, C-terminal domain L3551_02205 PF07650 KH domain L3551_02210 PF00237 Ribosomal protein L22p/L17e L3551_02215 PF00203 Ribosomal protein S19 L3551_02220 PF00181 Ribosomal Proteins L2, RNA binding domain L3551_02220 PF03947 Ribosomal Proteins L2, C-terminal domain L3551_02225 PF00276 Ribosomal protein L23 L3551_02230 PF00573 Ribosomal protein L4/L1 family L3551_02235 PF00297 Ribosomal protein L3 L3551_02240 PF00338 Ribosomal protein S10p/S20e L3551_02245 PF00009 Elongation factor Tu GTP binding domain L3551_02245 PF03144 Elongation factor Tu domain 2 L3551_02245 PF03143 Elongation factor Tu C-terminal domain L3551_02260 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain L3551_02260 PF00117 Glutamine amidotransferase class-I L3551_02270 PF00923 Transaldolase/Fructose-6-phosphate aldolase L3551_02285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02390 PF13091 PLD-like domain L3551_02395 PF01734 Patatin-like phospholipase L3551_02420 PF04002 RadC-like JAB domain L3551_02480 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02495 PF01578 Cytochrome C assembly protein L3551_02500 PF03618 Kinase/pyrophosphorylase L3551_02505 PF00444 Ribosomal protein L36 L3551_02515 PF17191 RecG wedge domain L3551_02515 PF00271 Helicase conserved C-terminal domain L3551_02515 PF00270 DEAD/DEAH box helicase L3551_02550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02560 PF00919 Uncharacterized protein family UPF0004 L3551_02560 PF04055 Radical SAM superfamily L3551_02575 PF02355 Protein export membrane protein L3551_02585 PF03900 Porphobilinogen deaminase, C-terminal domain L3551_02585 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain L3551_02590 PF01565 FAD binding domain L3551_02590 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain L3551_02595 PF00375 Sodium:dicarboxylate symporter family L3551_02600 PF00156 Phosphoribosyl transferase domain L3551_02630 PF00533 BRCA1 C Terminus (BRCT) domain L3551_02630 PF01653 NAD-dependent DNA ligase adenylation domain L3551_02630 PF03120 NAD-dependent DNA ligase OB-fold domain L3551_02630 PF12826 Helix-hairpin-helix motif L3551_02680 PF07478 D-ala D-ala ligase C-terminus L3551_02680 PF01820 D-ala D-ala ligase N-terminus L3551_02685 PF11953 Domain of unknown function (DUF3470) L3551_02685 PF00037 4Fe-4S binding domain L3551_02690 PF17782 DprA winged helix domain L3551_02690 PF02481 DNA recombination-mediator protein A L3551_02720 PF01043 SecA preprotein cross-linking domain L3551_02720 PF07517 SecA DEAD-like domain L3551_02720 PF02810 SEC-C motif L3551_02720 PF07516 SecA Wing and Scaffold domain L3551_02740 PF02646 RmuC family L3551_02745 PF07943 Penicillin-binding protein 5, C-terminal domain L3551_02745 PF00768 D-alanyl-D-alanine carboxypeptidase L3551_02750 PF04002 RadC-like JAB domain L3551_02765 PF01578 Cytochrome C assembly protein L3551_02765 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal L3551_02775 PF05192 MutS domain III L3551_02775 PF05188 MutS domain II L3551_02775 PF01624 MutS domain I L3551_02775 PF00488 MutS domain V L3551_02775 PF05190 MutS family domain IV L3551_02795 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02815 PF03448 MgtE intracellular N domain L3551_02815 PF01769 Divalent cation transporter L3551_02815 PF00571 CBS domain L3551_02835 PF00849 RNA pseudouridylate synthase L3551_02835 PF01479 S4 domain L3551_02840 PF08946 Osmosensory transporter coiled coil L3551_02840 PF00083 Sugar (and other) transporter L3551_02855 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02875 PF02938 GAD domain L3551_02875 PF00152 tRNA synthetases class II (D, K and N) L3551_02875 PF01336 OB-fold nucleic acid binding domain L3551_02895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02910 PF08946 Osmosensory transporter coiled coil L3551_02910 PF00083 Sugar (and other) transporter L3551_02915 PF01479 S4 domain L3551_02915 PF00849 RNA pseudouridylate synthase L3551_02935 PF03448 MgtE intracellular N domain L3551_02935 PF00571 CBS domain L3551_02935 PF01769 Divalent cation transporter L3551_02950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_02985 PF00263 Bacterial type II and III secretion system protein L3551_02985 PF03958 Bacterial type II/III secretion system short domain L3551_02990 PF00958 GMP synthase C terminal domain L3551_02990 PF02540 NAD synthase L3551_02990 PF00117 Glutamine amidotransferase class-I L3551_02995 PF03471 Transporter associated domain L3551_02995 PF03741 Integral membrane protein TerC family L3551_03020 PF03144 Elongation factor Tu domain 2 L3551_03020 PF06421 GTP-binding protein LepA C-terminus L3551_03020 PF00009 Elongation factor Tu GTP binding domain L3551_03020 PF14492 Elongation Factor G, domain II L3551_03020 PF00679 Elongation factor G C-terminus L3551_03035 PF00462 Glutaredoxin L3551_03040 PF01687 Riboflavin kinase L3551_03040 PF06574 FAD synthetase L3551_03045 PF01252 Signal peptidase (SPase) II L3551_03050 PF05193 Peptidase M16 inactive domain L3551_03050 PF00675 Insulinase (Peptidase family M16) L3551_03060 PF00551 Formyl transferase L3551_03075 PF12796 Ankyrin repeats (3 copies) L3551_03090 PF01668 SmpB protein L3551_03100 PF01790 Prolipoprotein diacylglyceryl transferase L3551_03130 PF13091 PLD-like domain L3551_03135 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase L3551_03175 PF16078 2-oxoglutarate dehydrogenase N-terminus L3551_03175 PF00676 Dehydrogenase E1 component L3551_03175 PF16870 2-oxoglutarate dehydrogenase C-terminal L3551_03175 PF02779 Transketolase, pyrimidine binding domain L3551_03180 PF13276 HTH-like domain L3551_03180 PF00665 Integrase core domain L3551_03180 PF13333 Integrase core domain L3551_03185 PF01527 Transposase L3551_03195 PF00579 tRNA synthetases class I (W and Y) L3551_03200 PF01025 GrpE L3551_03205 PF00348 Polyprenyl synthetase L3551_03210 PF00886 Ribosomal protein S16 L3551_03225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3551_03225 PF07498 Rho termination factor, N-terminal domain L3551_03225 PF07497 Rho termination factor, RNA-binding domain L3551_03230 PF00571 CBS domain L3551_03230 PF00478 IMP dehydrogenase / GMP reductase domain L3551_03235 PF00398 Ribosomal RNA adenine dimethylase L3551_03245 PF00121 Triosephosphate isomerase L3551_03275 PF04984 Phage tail sheath protein subtilisin-like domain L3551_03275 PF17482 Phage tail sheath C-terminal domain L3551_03320 PF01381 Helix-turn-helix L3551_03325 PF08676 MutL C terminal dimerisation domain L3551_03325 PF01119 DNA mismatch repair protein, C-terminal domain L3551_03335 PF12804 MobA-like NTP transferase domain L3551_03335 PF14602 Hexapeptide repeat of succinyl-transferase L3551_03335 PF00132 Bacterial transferase hexapeptide (six repeats) L3551_03340 PF01370 NAD dependent epimerase/dehydratase family L3551_03360 PF00005 ABC transporter L3551_03360 PF00664 ABC transporter transmembrane region L3551_03365 PF01212 Beta-eliminating lyase L3551_03370 PF01212 Beta-eliminating lyase L3551_03380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L3551_03380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L3551_03380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L3551_03385 PF00892 EamA-like transporter family L3551_03410 PF01523 Putative modulator of DNA gyrase L3551_03415 PF00355 Rieske [2Fe-2S] domain L3551_03415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal L3551_03420 PF03989 DNA gyrase C-terminal domain, beta-propeller L3551_03420 PF00521 DNA gyrase/topoisomerase IV, subunit A L3551_03440 PF02632 BioY family L3551_03445 PF00881 Nitroreductase family L3551_03455 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_03475 PF00571 CBS domain L3551_03475 PF03471 Transporter associated domain L3551_03480 PF01208 Uroporphyrinogen decarboxylase (URO-D) L3551_03485 PF00155 Aminotransferase class I and II L3551_03490 PF00893 Small Multidrug Resistance protein L3551_03505 PF00464 Serine hydroxymethyltransferase L3551_03510 PF00162 Phosphoglycerate kinase L3551_03525 PF00834 Ribulose-phosphate 3 epimerase family L3551_03530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain L3551_03530 PF00575 S1 RNA binding domain L3551_03530 PF00013 KH domain L3551_03530 PF01138 3' exoribonuclease family, domain 1 L3551_03530 PF03725 3' exoribonuclease family, domain 2 L3551_03535 PF00312 Ribosomal protein S15 L3551_03540 PF16198 tRNA pseudouridylate synthase B C-terminal domain L3551_03540 PF01509 TruB family pseudouridylate synthase (N terminal domain) L3551_03550 PF00665 Integrase core domain L3551_03550 PF13333 Integrase core domain L3551_03550 PF13276 HTH-like domain L3551_03555 PF01527 Transposase L3551_03570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L3551_03570 PF01872 RibD C-terminal domain L3551_03575 PF01966 HD domain L3551_03575 PF13286 Phosphohydrolase-associated domain L3551_03580 PF01521 Iron-sulphur cluster biosynthesis L3551_03585 PF00005 ABC transporter L3551_03590 PF02129 X-Pro dipeptidyl-peptidase (S15 family) L3551_03595 PF00266 Aminotransferase class-V L3551_03600 PF01027 Inhibitor of apoptosis-promoting Bax1 L3551_03605 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 L3551_03620 PF08240 Alcohol dehydrogenase GroES-like domain L3551_03620 PF00107 Zinc-binding dehydrogenase L3551_03625 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_03655 PF02401 LytB protein L3551_03680 PF00436 Single-strand binding protein family L3551_03685 PF00701 Dihydrodipicolinate synthetase family L3551_03705 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_03715 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal L3551_03715 PF01926 50S ribosome-binding GTPase L3551_03725 PF01039 Carboxyl transferase domain L3551_03775 PF00579 tRNA synthetases class I (W and Y) L3551_03790 PF00171 Aldehyde dehydrogenase family L3551_03800 PF00293 NUDIX domain L3551_03805 PF01026 TatD related DNase L3551_03810 PF00056 lactate/malate dehydrogenase, NAD binding domain L3551_03810 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain L3551_03815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit L3551_03820 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L3551_03825 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 L3551_03830 PF01230 HIT domain L3551_03845 PF01225 Mur ligase family, catalytic domain L3551_03845 PF02875 Mur ligase family, glutamate ligase domain L3551_03845 PF08245 Mur ligase middle domain L3551_03850 PF08338 Domain of unknown function (DUF1731) L3551_03850 PF01370 NAD dependent epimerase/dehydratase family L3551_03860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L3551_03860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L3551_03865 PF02504 Fatty acid synthesis protein L3551_03870 PF01783 Ribosomal L32p protein family L3551_03875 PF02405 Permease MlaE L3551_03880 PF00005 ABC transporter L3551_03885 PF00448 SRP54-type protein, GTPase domain L3551_03885 PF02881 SRP54-type protein, helical bundle domain L3551_03885 PF02978 Signal peptide binding domain L3551_03900 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_03905 PF07977 FabA-like domain L3551_03915 PF01103 Surface antigen L3551_03915 PF07244 Surface antigen variable number repeat L3551_03920 PF02163 Peptidase family M50 L3551_03920 PF17820 PDZ domain L3551_03935 PF00216 Bacterial DNA-binding protein L3551_03940 PF00575 S1 RNA binding domain L3551_03945 PF02390 Putative methyltransferase L3551_03965 PF13276 HTH-like domain L3551_03965 PF13333 Integrase core domain L3551_03965 PF00665 Integrase core domain L3551_03980 PF01678 Diaminopimelate epimerase L3551_03985 PF02629 CoA binding domain L3551_03985 PF00549 CoA-ligase L3551_03990 PF00549 CoA-ligase L3551_03990 PF08442 ATP-grasp domain L3551_04005 PF04452 RNA methyltransferase L3551_04020 PF01218 Coproporphyrinogen III oxidase L3551_04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3551_04025 PF00512 His Kinase A (phospho-acceptor) domain L3551_04025 PF08448 PAS fold L3551_04025 PF13188 PAS domain L3551_04025 PF00072 Response regulator receiver domain L3551_04030 PF13614 AAA domain L3551_04035 PF17762 HTH domain found in ParB protein L3551_04035 PF02195 ParB-like nuclease domain L3551_04040 PF02542 YgbB family L3551_04040 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L3551_04055 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04065 PF01782 RimM N-terminal domain L3551_04065 PF05239 PRC-barrel domain L3551_04070 PF08207 Elongation factor P (EF-P) KOW-like domain L3551_04070 PF01132 Elongation factor P (EF-P) OB domain L3551_04070 PF09285 Elongation factor P, C-terminal L3551_04080 PF00155 Aminotransferase class I and II L3551_04090 PF00183 Hsp90 protein L3551_04105 PF02132 RecR protein L3551_04105 PF13662 Toprim domain L3551_04120 PF00270 DEAD/DEAH box helicase L3551_04120 PF00271 Helicase conserved C-terminal domain L3551_04120 PF17764 3′ DNA-binding domain (3′BD) L3551_04120 PF18074 Primosomal protein N C-terminal domain L3551_04120 PF18319 PriA DNA helicase Cys-rich region (CRR) domain L3551_04130 PF12796 Ankyrin repeats (3 copies) L3551_04130 PF13606 Ankyrin repeat L3551_04135 PF02511 Thymidylate synthase complementing protein L3551_04140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L3551_04145 PF00109 Beta-ketoacyl synthase, N-terminal domain L3551_04145 PF02801 Beta-ketoacyl synthase, C-terminal domain L3551_04150 PF00550 Phosphopantetheine attachment site L3551_04155 PF00348 Polyprenyl synthetase L3551_04165 PF00004 ATPase family associated with various cellular activities (AAA) L3551_04165 PF07724 AAA domain (Cdc48 subfamily) L3551_04165 PF10431 C-terminal, D2-small domain, of ClpB protein L3551_04170 PF00227 Proteasome subunit L3551_04185 PF00762 Ferrochelatase L3551_04195 PF00334 Nucleoside diphosphate kinase L3551_04200 PF00202 Aminotransferase class-III L3551_04205 PF00571 CBS domain L3551_04205 PF03471 Transporter associated domain L3551_04205 PF01595 Cyclin M transmembrane N-terminal domain L3551_04210 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) L3551_04215 PF02441 Flavoprotein L3551_04220 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain L3551_04220 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain L3551_04235 PF08264 Anticodon-binding domain of tRNA L3551_04235 PF00133 tRNA synthetases class I (I, L, M and V) L3551_04235 PF13603 Leucyl-tRNA synthetase, Domain 2 L3551_04235 PF09334 tRNA synthetases class I (M) L3551_04240 PF01551 Peptidase family M23 L3551_04245 PF13411 MerR HTH family regulatory protein L3551_04250 PF00216 Bacterial DNA-binding protein L3551_04330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04350 PF03099 Biotin/lipoate A/B protein ligase family L3551_04355 PF02016 LD-carboxypeptidase N-terminal domain L3551_04355 PF17676 LD-carboxypeptidase C-terminal domain L3551_04365 PF07733 Bacterial DNA polymerase III alpha NTPase domain L3551_04365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L3551_04365 PF14579 Helix-hairpin-helix motif L3551_04365 PF02811 PHP domain L3551_04370 PF01250 Ribosomal protein S6 L3551_04375 PF01084 Ribosomal protein S18 L3551_04380 PF01281 Ribosomal protein L9, N-terminal domain L3551_04380 PF03948 Ribosomal protein L9, C-terminal domain L3551_04385 PF10397 Adenylosuccinate lyase C-terminus L3551_04385 PF00206 Lyase L3551_04395 PF13333 Integrase core domain L3551_04395 PF00665 Integrase core domain L3551_04395 PF13276 HTH-like domain L3551_04400 PF01527 Transposase L3551_04405 PF13685 Iron-containing alcohol dehydrogenase L3551_04410 PF07687 Peptidase dimerisation domain L3551_04410 PF01546 Peptidase family M20/M25/M40 L3551_04445 PF00186 Dihydrofolate reductase L3551_04450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) L3551_04450 PF00809 Pterin binding enzyme L3551_04455 PF02152 Dihydroneopterin aldolase L3551_04460 PF03070 TENA/THI-4/PQQC family L3551_04495 PF00085 Thioredoxin L3551_04500 PF01612 3'-5' exonuclease L3551_04500 PF00570 HRDC domain L3551_04515 PF07650 KH domain L3551_04515 PF01926 50S ribosome-binding GTPase L3551_04540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04560 PF00033 Cytochrome b/b6/petB L3551_04560 PF00032 Cytochrome b(C-terminal)/b6/petD L3551_04565 PF02167 Cytochrome C1 family L3551_04570 PF00271 Helicase conserved C-terminal domain L3551_04570 PF04851 Type III restriction enzyme, res subunit L3551_04570 PF12344 Ultra-violet resistance protein B L3551_04570 PF17757 UvrB interaction domain L3551_04570 PF02151 UvrB/uvrC motif L3551_04585 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04610 PF00226 DnaJ domain L3551_04610 PF01556 DnaJ C terminal domain L3551_04610 PF00684 DnaJ central domain L3551_04620 PF13393 Histidyl-tRNA synthetase L3551_04620 PF03129 Anticodon binding domain L3551_04625 PF01975 Survival protein SurE L3551_04635 PF13520 Amino acid permease L3551_04640 PF00324 Amino acid permease L3551_04650 PF02774 Semialdehyde dehydrogenase, dimerisation domain L3551_04650 PF01118 Semialdehyde dehydrogenase, NAD binding domain L3551_04655 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain L3551_04655 PF02222 ATP-grasp domain L3551_04660 PF04379 ApaG domain L3551_04665 PF00528 Binding-protein-dependent transport system inner membrane component L3551_04670 PF00581 Rhodanese-like domain L3551_04670 PF17773 UPF0176 acylphosphatase like domain L3551_04715 PF01921 tRNA synthetases class I (K) L3551_04725 PF03135 CagE, TrbE, VirB family, component of type IV transporter system L3551_04730 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L3551_04735 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L3551_04740 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L3551_04745 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L3551_04775 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04805 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04810 PF02272 DHHA1 domain L3551_04810 PF17768 RecJ OB domain L3551_04810 PF01368 DHH family L3551_04815 PF04055 Radical SAM superfamily L3551_04815 PF01938 TRAM domain L3551_04815 PF00919 Uncharacterized protein family UPF0004 L3551_04820 PF08264 Anticodon-binding domain of tRNA L3551_04820 PF00133 tRNA synthetases class I (I, L, M and V) L3551_04830 PF03483 B3/4 domain L3551_04830 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain L3551_04830 PF01588 Putative tRNA binding domain L3551_04830 PF03484 tRNA synthetase B5 domain L3551_04830 PF03147 Ferredoxin-fold anticodon binding domain L3551_04840 PF00119 ATP synthase A chain L3551_04845 PF00137 ATP synthase subunit C L3551_04870 PF02628 Cytochrome oxidase assembly protein L3551_04875 PF02785 Biotin carboxylase C-terminal domain L3551_04875 PF00289 Biotin carboxylase, N-terminal domain L3551_04875 PF00364 Biotin-requiring enzyme L3551_04875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L3551_04875 PF18140 Propionyl-coenzyme A carboxylase BT domain L3551_04885 PF00749 tRNA synthetases class I (E and Q), catalytic domain L3551_04890 PF00011 Hsp20/alpha crystallin family L3551_04895 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ L3551_04905 PF00380 Ribosomal protein S9/S16 L3551_04910 PF00572 Ribosomal protein L13 L3551_04915 PF02321 Outer membrane efflux protein L3551_04920 PF10691 Protein of unknown function (DUF2497) L3551_04925 PF01728 FtsJ-like methyltransferase L3551_04950 PF01702 Queuine tRNA-ribosyltransferase L3551_04960 PF00675 Insulinase (Peptidase family M16) L3551_04960 PF05193 Peptidase M16 inactive domain L3551_04965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L3551_04965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L3551_04975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_04990 PF03023 Lipid II flippase MurJ L3551_05005 PF13932 GidA associated domain L3551_05005 PF01134 Glucose inhibited division protein A L3551_05010 PF00557 Metallopeptidase family M24 L3551_05010 PF01321 Creatinase/Prolidase N-terminal domain L3551_05045 PF03135 CagE, TrbE, VirB family, component of type IV transporter system L3551_05060 PF03060 Nitronate monooxygenase L3551_05070 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit L3551_05080 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_05125 PF00072 Response regulator receiver domain L3551_05125 PF00486 Transcriptional regulatory protein, C terminal L3551_05130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus L3551_05130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus L3551_05135 PF04608 Phosphatidylglycerophosphatase A L3551_05150 PF13085 2Fe-2S iron-sulfur cluster binding domain L3551_05155 PF02130 Uncharacterized protein family UPF0054 L3551_05165 PF12327 FtsZ family, C-terminal domain L3551_05165 PF00091 Tubulin/FtsZ family, GTPase domain L3551_05175 PF01078 Magnesium chelatase, subunit ChlI L3551_05175 PF13335 Magnesium chelatase, subunit ChlI C-terminal L3551_05185 PF01078 Magnesium chelatase, subunit ChlI L3551_05185 PF13335 Magnesium chelatase, subunit ChlI C-terminal L3551_05190 PF01522 Polysaccharide deacetylase L3551_05195 PF03717 Penicillin-binding Protein dimerisation domain L3551_05195 PF00905 Penicillin binding protein transpeptidase domain L3551_05200 PF00004 ATPase family associated with various cellular activities (AAA) L3551_05200 PF05362 Lon protease (S16) C-terminal proteolytic domain L3551_05200 PF02190 ATP-dependent protease La (LON) substrate-binding domain L3551_05205 PF10431 C-terminal, D2-small domain, of ClpB protein L3551_05205 PF06689 ClpX C4-type zinc finger L3551_05205 PF07724 AAA domain (Cdc48 subfamily) L3551_05210 PF00574 Clp protease L3551_05215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L3551_05215 PF05698 Bacterial trigger factor protein (TF) C-terminus L3551_05215 PF05697 Bacterial trigger factor protein (TF) L3551_05225 PF04972 BON domain L3551_05235 PF17827 PrmC N-terminal domain L3551_05235 PF05175 Methyltransferase small domain L3551_05235 PF02390 Putative methyltransferase L3551_05240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_05255 PF00164 Ribosomal protein S12/S23 L3551_05260 PF00177 Ribosomal protein S7p/S5e L3551_05265 PF00679 Elongation factor G C-terminus L3551_05265 PF14492 Elongation Factor G, domain II L3551_05265 PF03764 Elongation factor G, domain IV L3551_05265 PF00009 Elongation factor Tu GTP binding domain L3551_05265 PF03144 Elongation factor Tu domain 2 L3551_05270 PF03144 Elongation factor Tu domain 2 L3551_05270 PF00009 Elongation factor Tu GTP binding domain L3551_05270 PF03143 Elongation factor Tu C-terminal domain L3551_05285 PF02357 Transcription termination factor nusG L3551_05285 PF00467 KOW motif L3551_05290 PF03946 Ribosomal protein L11, N-terminal domain L3551_05290 PF00298 Ribosomal protein L11, RNA binding domain L3551_05295 PF00687 Ribosomal protein L1p/L10e family L3551_05300 PF00466 Ribosomal protein L10 L3551_05305 PF00542 Ribosomal protein L7/L12 C-terminal domain L3551_05305 PF16320 Ribosomal protein L7/L12 dimerisation domain L3551_05310 PF04563 RNA polymerase beta subunit L3551_05310 PF04997 RNA polymerase Rpb1, domain 1 L3551_05310 PF00623 RNA polymerase Rpb1, domain 2 L3551_05310 PF04983 RNA polymerase Rpb1, domain 3 L3551_05310 PF05000 RNA polymerase Rpb1, domain 4 L3551_05310 PF04998 RNA polymerase Rpb1, domain 5 L3551_05310 PF04561 RNA polymerase Rpb2, domain 2 L3551_05310 PF04565 RNA polymerase Rpb2, domain 3 L3551_05310 PF10385 RNA polymerase beta subunit external 1 domain L3551_05310 PF00562 RNA polymerase Rpb2, domain 6 L3551_05310 PF04560 RNA polymerase Rpb2, domain 7 L3551_05315 PF01207 Dihydrouridine synthase (Dus) L3551_05325 PF02403 Seryl-tRNA synthetase N-terminal domain L3551_05325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3551_05330 PF02844 Phosphoribosylglycinamide synthetase, N domain L3551_05330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain L3551_05330 PF02843 Phosphoribosylglycinamide synthetase, C domain L3551_05340 PF18324 Hypothetical protein TT1725 L3551_05340 PF00180 Isocitrate/isopropylmalate dehydrogenase L3551_05350 PF01527 Transposase L3551_05390 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_05445 PF14602 Hexapeptide repeat of succinyl-transferase L3551_05445 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal L3551_05445 PF00132 Bacterial transferase hexapeptide (six repeats) L3551_05460 PF00890 FAD binding domain L3551_05460 PF02910 Fumarate reductase flavoprotein C-term L3551_05475 PF00625 Guanylate kinase L3551_05490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L3551_05490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L3551_05495 PF13416 Bacterial extracellular solute-binding protein L3551_05515 PF01513 ATP-NAD kinase L3551_05520 PF01197 Ribosomal protein L31 L3551_05525 PF00698 Acyl transferase domain L3551_05535 PF06415 BPG-independent PGAM N-terminus (iPGM_N) L3551_05535 PF01676 Metalloenzyme superfamily L3551_05550 PF02272 DHHA1 domain L3551_05550 PF01411 tRNA synthetases class II (A) L3551_05550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L3551_05570 PF01632 Ribosomal protein L35 L3551_05575 PF00453 Ribosomal protein L20 L3551_05580 PF02911 Formyl transferase, C-terminal domain L3551_05580 PF00551 Formyl transferase L3551_05590 PF02142 MGS-like domain L3551_05590 PF01808 AICARFT/IMPCHase bienzyme L3551_05620 PF10576 Iron-sulfur binding domain of endonuclease III L3551_05620 PF00730 HhH-GPD superfamily base excision DNA repair protein L3551_05620 PF00633 Helix-hairpin-helix motif L3551_05640 PF08245 Mur ligase middle domain L3551_05650 PF01043 SecA preprotein cross-linking domain L3551_05650 PF00271 Helicase conserved C-terminal domain L3551_05650 PF02810 SEC-C motif L3551_05650 PF07517 SecA DEAD-like domain L3551_05650 PF07516 SecA Wing and Scaffold domain L3551_05675 PF08245 Mur ligase middle domain L3551_05675 PF02875 Mur ligase family, glutamate ligase domain L3551_05690 PF03364 Polyketide cyclase / dehydrase and lipid transport L3551_05695 PF13462 Thioredoxin L3551_05725 PF12169 DNA polymerase III subunits gamma and tau domain III L3551_05730 PF02575 YbaB/EbfC DNA-binding family L3551_05735 PF13505 Outer membrane protein beta-barrel domain L3551_05740 PF04542 Sigma-70 region 2 L3551_05740 PF00140 Sigma-70 factor, region 1.2 L3551_05740 PF04545 Sigma-70, region 4 L3551_05750 PF00712 DNA polymerase III beta subunit, N-terminal domain L3551_05750 PF02768 DNA polymerase III beta subunit, C-terminal domain L3551_05750 PF02767 DNA polymerase III beta subunit, central domain L3551_05755 PF01416 tRNA pseudouridine synthase L3551_05760 PF00154 recA bacterial DNA recombination protein L3551_05770 PF01195 Peptidyl-tRNA hydrolase L3551_05775 PF01386 Ribosomal L25p family L3551_05775 PF14693 Ribosomal protein TL5, C-terminal domain L3551_05790 PF01795 MraW methylase family L3551_05795 PF07690 Major Facilitator Superfamily L3551_05795 PF00083 Sugar (and other) transporter L3551_05800 PF00557 Metallopeptidase family M24 L3551_05805 PF02491 SHS2 domain inserted in FTSA L3551_05810 PF01327 Polypeptide deformylase L3551_05815 PF03167 Uracil DNA glycosylase superfamily L3551_05820 PF03232 Ubiquinone biosynthesis protein COQ7 L3551_05830 PF13537 Glutamine amidotransferase domain L3551_05830 PF00156 Phosphoribosyl transferase domain L3551_05845 PF03631 Virulence factor BrkB L3551_05855 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain L3551_05855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L3551_05855 PF02142 MGS-like domain L3551_05865 PF00849 RNA pseudouridylate synthase L3551_05875 PF03772 Competence protein L3551_05875 PF00753 Metallo-beta-lactamase superfamily L3551_05895 PF02223 Thymidylate kinase L3551_05905 PF02254 TrkA-N domain L3551_05905 PF00999 Sodium/hydrogen exchanger family L3551_05910 PF01842 ACT domain L3551_05910 PF13840 ACT domain L3551_05910 PF00696 Amino acid kinase family L3551_05915 PF02463 RecF/RecN/SMC N terminal domain L3551_05920 PF00578 AhpC/TSA family L3551_05925 PF02951 Prokaryotic glutathione synthetase, N-terminal domain L3551_05925 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain L3551_05930 PF04101 Glycosyltransferase family 28 C-terminal domain L3551_05930 PF03033 Glycosyltransferase family 28 N-terminal domain L3551_05940 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_05940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L3551_05965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_05980 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_05985 PF09312 SurA N-terminal domain L3551_05995 PF00719 Inorganic pyrophosphatase L3551_06020 PF00691 OmpA family L3551_06025 PF01171 PP-loop family L3551_06035 PF01434 Peptidase family M41 L3551_06035 PF06480 FtsH Extracellular L3551_06035 PF17862 AAA+ lid domain L3551_06035 PF00004 ATPase family associated with various cellular activities (AAA) L3551_06045 PF06480 FtsH Extracellular L3551_06045 PF17862 AAA+ lid domain L3551_06045 PF00004 ATPase family associated with various cellular activities (AAA) L3551_06045 PF01434 Peptidase family M41 L3551_06065 PF00364 Biotin-requiring enzyme L3551_06065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3551_06065 PF02817 e3 binding domain L3551_06095 PF00664 ABC transporter transmembrane region L3551_06095 PF00005 ABC transporter L3551_06105 PF00814 Glycoprotease family L3551_06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3551_06115 PF00989 PAS fold L3551_06115 PF13188 PAS domain L3551_06115 PF13426 PAS domain L3551_06115 PF00512 His Kinase A (phospho-acceptor) domain L3551_06120 PF00202 Aminotransferase class-III L3551_06140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_06155 PF01594 AI-2E family transporter L3551_06165 PF02899 Phage integrase, N-terminal SAM-like domain L3551_06165 PF00589 Phage integrase family L3551_06175 PF01649 Ribosomal protein S20 L3551_06180 PF00285 Citrate synthase, C-terminal domain L3551_06210 PF05496 Holliday junction DNA helicase RuvB P-loop domain L3551_06210 PF05491 RuvB C-terminal winged helix domain L3551_06210 PF17864 RuvB AAA lid domain L3551_06215 PF01330 RuvA N terminal domain L3551_06215 PF07499 RuvA, C-terminal domain L3551_06220 PF00034 Cytochrome c L3551_06230 PF00580 UvrD/REP helicase N-terminal domain L3551_06230 PF13361 UvrD-like helicase C-terminal domain L3551_06240 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 L3551_06245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L3551_06250 PF00361 Proton-conducting membrane transporter L3551_06250 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L3551_06255 PF00361 Proton-conducting membrane transporter L3551_06260 PF00361 Proton-conducting membrane transporter L3551_06265 PF02237 Biotin protein ligase C terminal domain L3551_06265 PF03099 Biotin/lipoate A/B protein ligase family L3551_06270 PF03100 CcmE L3551_06305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit L3551_06305 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region L3551_06305 PF10531 SLBB domain L3551_06310 PF00707 Translation initiation factor IF-3, C-terminal domain L3551_06310 PF05198 Translation initiation factor IF-3, N-terminal domain L3551_06315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3551_06315 PF03129 Anticodon binding domain L3551_06315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L3551_06320 PF12838 4Fe-4S dicluster domain L3551_06325 PF10396 GTP-binding protein TrmE N-terminus L3551_06325 PF12631 MnmE helical domain L3551_06325 PF01926 50S ribosome-binding GTPase L3551_06335 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3551_06350 PF00953 Glycosyl transferase family 4 L3551_06355 PF01351 Ribonuclease HII L3551_06375 PF02769 AIR synthase related protein, C-terminal domain L3551_06375 PF00586 AIR synthase related protein, N-terminal domain L3551_06380 PF01259 SAICAR synthetase L3551_06385 PF01746 tRNA (Guanine-1)-methyltransferase L3551_06390 PF01245 Ribosomal protein L19 L3551_06395 PF00528 Binding-protein-dependent transport system inner membrane component L3551_06410 PF01243 Pyridoxamine 5'-phosphate oxidase L3551_06410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region L3551_06415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain L3551_06415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain L3551_06415 PF06827 Zinc finger found in FPG and IleRS L3551_06460 PF10609 NUBPL iron-transfer P-loop NTPase L3551_06480 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_06530 PF00361 Proton-conducting membrane transporter L3551_06535 PF01098 Cell cycle protein L3551_06540 PF00266 Aminotransferase class-V L3551_06575 PF13180 PDZ domain L3551_06580 PF01145 SPFH domain / Band 7 family L3551_06585 PF01145 SPFH domain / Band 7 family L3551_06590 PF01119 DNA mismatch repair protein, C-terminal domain L3551_06590 PF08676 MutL C terminal dimerisation domain L3551_06595 PF00731 AIR carboxylase L3551_06605 PF01192 RNA polymerase Rpb6 L3551_06620 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L3551_06620 PF00361 Proton-conducting membrane transporter L3551_06620 PF13244 Domain of unknown function (DUF4040) L3551_06630 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L3551_06635 PF04539 Sigma-70 region 3 L3551_06635 PF04546 Sigma-70, non-essential region L3551_06635 PF04542 Sigma-70 region 2 L3551_06635 PF00140 Sigma-70 factor, region 1.2 L3551_06635 PF04545 Sigma-70, region 4 L3551_06635 PF03979 Sigma-70 factor, region 1.1 L3551_06660 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L3551_06665 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L3551_06675 PF00483 Nucleotidyl transferase L3551_06675 PF01050 Mannose-6-phosphate isomerase L3551_06685 PF01050 Mannose-6-phosphate isomerase L3551_06685 PF00483 Nucleotidyl transferase L3551_06690 PF02687 FtsX-like permease family L3551_06690 PF12704 MacB-like periplasmic core domain L3551_06705 PF00231 ATP synthase L3551_06710 PF01523 Putative modulator of DNA gyrase L3551_06715 PF00313 'Cold-shock' DNA-binding domain L3551_06720 PF00271 Helicase conserved C-terminal domain L3551_06720 PF00270 DEAD/DEAH box helicase L3551_06725 PF17871 AAA lid domain L3551_06725 PF07724 AAA domain (Cdc48 subfamily) L3551_06725 PF00004 ATPase family associated with various cellular activities (AAA) L3551_06725 PF02861 Clp amino terminal domain, pathogenicity island component L3551_06725 PF10431 C-terminal, D2-small domain, of ClpB protein L3551_06735 PF01791 DeoC/LacD family aldolase L3551_06750 PF01180 Dihydroorotate dehydrogenase L3551_06755 PF00035 Double-stranded RNA binding motif L3551_06755 PF14622 Ribonuclease-III-like L3551_06775 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_06785 PF02630 SCO1/SenC L3551_06790 PF00929 Exonuclease L3551_06800 PF02556 Preprotein translocase subunit SecB L3551_06805 PF00694 Aconitase C-terminal domain L3551_06805 PF00330 Aconitase family (aconitate hydratase) L3551_06810 PF14850 DNA-binding domain of Proline dehydrogenase L3551_06810 PF18327 Proline utilization A proline dehydrogenase N-terminal domain L3551_06810 PF01619 Proline dehydrogenase L3551_06810 PF00171 Aldehyde dehydrogenase family L3551_06820 PF02789 Cytosol aminopeptidase family, N-terminal domain L3551_06820 PF00883 Cytosol aminopeptidase family, catalytic domain L3551_06830 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal L3551_06830 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L3551_06830 PF00384 Molybdopterin oxidoreductase L3551_06835 PF00146 NADH dehydrogenase L3551_06840 PF00490 Delta-aminolevulinic acid dehydratase L3551_06845 PF00665 Integrase core domain L3551_06845 PF13276 HTH-like domain L3551_06845 PF13333 Integrase core domain L3551_06850 PF01527 Transposase L3551_06865 PF02091 Glycyl-tRNA synthetase alpha subunit L3551_06870 PF05746 DALR anticodon binding domain L3551_06870 PF02092 Glycyl-tRNA synthetase beta subunit L3551_06875 PF01541 GIY-YIG catalytic domain L3551_06875 PF08459 UvrC Helix-hairpin-helix N-terminal L3551_06875 PF02151 UvrB/uvrC motif L3551_06890 PF00588 SpoU rRNA Methylase family L3551_06890 PF08032 RNA 2'-O ribose methyltransferase substrate binding L3551_06910 PF01545 Cation efflux family L3551_06920 PF02660 Glycerol-3-phosphate acyltransferase L3551_06925 PF01235 Sodium:alanine symporter family L3551_06930 PF01235 Sodium:alanine symporter family L3551_06935 PF01066 CDP-alcohol phosphatidyltransferase L3551_06940 PF02666 Phosphatidylserine decarboxylase L3551_06960 PF01751 Toprim domain L3551_06960 PF00986 DNA gyrase B subunit, carboxyl terminus L3551_06960 PF00204 DNA gyrase B L3551_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3551_06965 PF01425 Amidase L3551_06970 PF00476 DNA polymerase family A L3551_06970 PF01367 5'-3' exonuclease, C-terminal SAM fold L3551_06970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L3551_06985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_07030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L3551_07030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L3551_07030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L3551_07030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L3551_07040 PF00677 Lumazine binding domain L3551_07050 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain L3551_07050 PF01409 tRNA synthetases class II core domain (F) L3551_07055 PF00132 Bacterial transferase hexapeptide (six repeats) L3551_07055 PF14602 Hexapeptide repeat of succinyl-transferase L3551_07055 PF12804 MobA-like NTP transferase domain L3551_07075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_07095 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain L3551_07100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3551_07100 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3551_07105 PF00528 Binding-protein-dependent transport system inner membrane component L3551_07110 PF00468 Ribosomal protein L34 L3551_07115 PF00825 Ribonuclease P L3551_07135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_07170 PF03477 ATP cone domain L3551_07170 PF02867 Ribonucleotide reductase, barrel domain L3551_07170 PF00317 Ribonucleotide reductase, all-alpha domain L3551_07175 PF03652 Holliday junction resolvase L3551_07180 PF02075 Crossover junction endodeoxyribonuclease RuvC L3551_07185 PF00510 Cytochrome c oxidase subunit III L3551_07195 PF03070 TENA/THI-4/PQQC family L3551_07200 PF02773 S-adenosylmethionine synthetase, C-terminal domain L3551_07200 PF02772 S-adenosylmethionine synthetase, central domain L3551_07200 PF00438 S-adenosylmethionine synthetase, N-terminal domain L3551_07210 PF01016 Ribosomal L27 protein L3551_07215 PF00829 Ribosomal prokaryotic L21 protein L3551_07235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_07255 PF00004 ATPase family associated with various cellular activities (AAA) L3551_07255 PF07724 AAA domain (Cdc48 subfamily) L3551_07255 PF17871 AAA lid domain L3551_07255 PF02861 Clp amino terminal domain, pathogenicity island component L3551_07255 PF10431 C-terminal, D2-small domain, of ClpB protein L3551_07260 PF05088 Bacterial NAD-glutamate dehydrogenase L3551_07270 PF00072 Response regulator receiver domain L3551_07270 PF00990 Diguanylate cyclase, GGDEF domain L3551_07275 PF02565 Recombination protein O C terminal L3551_07275 PF11967 Recombination protein O N terminal L3551_07315 PF00772 DnaB-like helicase N terminal domain L3551_07315 PF03796 DnaB-like helicase C terminal domain L3551_07325 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L3551_07350 PF01040 UbiA prenyltransferase family L3551_07355 PF02033 Ribosome-binding factor A L3551_07360 PF00009 Elongation factor Tu GTP binding domain L3551_07360 PF11987 Translation-initiation factor 2 L3551_07360 PF04760 Translation initiation factor IF-2, N-terminal region L3551_07365 PF08529 NusA N-terminal domain L3551_07365 PF13184 NusA-like KH domain L3551_07365 PF00575 S1 RNA binding domain L3551_07370 PF00873 AcrB/AcrD/AcrF family L3551_07380 PF00120 Glutamine synthetase, catalytic domain