locus-tag class description NHG98_00005 PF00308 Bacterial dnaA protein NHG98_00005 PF08299 Bacterial dnaA protein helix-turn-helix NHG98_00005 PF11638 DnaA N-terminal domain NHG98_00020 PF00925 GTP cyclohydrolase II NHG98_00025 PF04335 VirB8 protein NHG98_00040 PF00437 Type II/IV secretion system protein NHG98_00045 PF02534 Type IV secretory system Conjugative DNA transfer NHG98_00055 PF13847 Methyltransferase domain NHG98_00055 PF17827 PrmC N-terminal domain NHG98_00065 PF00115 Cytochrome C and Quinol oxidase polypeptide I NHG98_00075 PF02190 ATP-dependent protease La (LON) substrate-binding domain NHG98_00075 PF05362 Lon protease (S16) C-terminal proteolytic domain NHG98_00075 PF00004 ATPase family associated with various cellular activities (AAA) NHG98_00080 PF07724 AAA domain (Cdc48 subfamily) NHG98_00080 PF10431 C-terminal, D2-small domain, of ClpB protein NHG98_00080 PF06689 ClpX C4-type zinc finger NHG98_00085 PF00574 Clp protease NHG98_00090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NHG98_00090 PF05698 Bacterial trigger factor protein (TF) C-terminus NHG98_00090 PF05697 Bacterial trigger factor protein (TF) NHG98_00100 PF04972 BON domain NHG98_00105 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NHG98_00105 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NHG98_00110 PF03033 Glycosyltransferase family 28 N-terminal domain NHG98_00110 PF04101 Glycosyltransferase family 28 C-terminal domain NHG98_00120 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_00120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NHG98_00140 PF10417 C-terminal domain of 1-Cys peroxiredoxin NHG98_00140 PF00578 AhpC/TSA family NHG98_00145 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_00160 PF02899 Phage integrase, N-terminal SAM-like domain NHG98_00160 PF00589 Phage integrase family NHG98_00165 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_00165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NHG98_00185 PF00164 Ribosomal protein S12/S23 NHG98_00190 PF00177 Ribosomal protein S7p/S5e NHG98_00195 PF03144 Elongation factor Tu domain 2 NHG98_00195 PF00009 Elongation factor Tu GTP binding domain NHG98_00195 PF00679 Elongation factor G C-terminus NHG98_00195 PF14492 Elongation Factor G, domain II NHG98_00195 PF03764 Elongation factor G, domain IV NHG98_00200 PF00009 Elongation factor Tu GTP binding domain NHG98_00200 PF03144 Elongation factor Tu domain 2 NHG98_00200 PF03143 Elongation factor Tu C-terminal domain NHG98_00215 PF02357 Transcription termination factor nusG NHG98_00215 PF00467 KOW motif NHG98_00220 PF03946 Ribosomal protein L11, N-terminal domain NHG98_00220 PF00298 Ribosomal protein L11, RNA binding domain NHG98_00225 PF00687 Ribosomal protein L1p/L10e family NHG98_00230 PF00466 Ribosomal protein L10 NHG98_00235 PF00542 Ribosomal protein L7/L12 C-terminal domain NHG98_00235 PF16320 Ribosomal protein L7/L12 dimerisation domain NHG98_00240 PF04563 RNA polymerase beta subunit NHG98_00240 PF00562 RNA polymerase Rpb2, domain 6 NHG98_00240 PF10385 RNA polymerase beta subunit external 1 domain NHG98_00240 PF04565 RNA polymerase Rpb2, domain 3 NHG98_00240 PF04561 RNA polymerase Rpb2, domain 2 NHG98_00240 PF04998 RNA polymerase Rpb1, domain 5 NHG98_00240 PF04983 RNA polymerase Rpb1, domain 3 NHG98_00240 PF04560 RNA polymerase Rpb2, domain 7 NHG98_00240 PF00623 RNA polymerase Rpb1, domain 2 NHG98_00240 PF04997 RNA polymerase Rpb1, domain 1 NHG98_00240 PF05000 RNA polymerase Rpb1, domain 4 NHG98_00245 PF01207 Dihydrouridine synthase (Dus) NHG98_00255 PF02403 Seryl-tRNA synthetase N-terminal domain NHG98_00255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NHG98_00260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NHG98_00260 PF02844 Phosphoribosylglycinamide synthetase, N domain NHG98_00260 PF02843 Phosphoribosylglycinamide synthetase, C domain NHG98_00280 PF03120 NAD-dependent DNA ligase OB-fold domain NHG98_00280 PF12826 Helix-hairpin-helix motif NHG98_00280 PF01653 NAD-dependent DNA ligase adenylation domain NHG98_00280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NHG98_00280 PF00533 BRCA1 C Terminus (BRCT) domain NHG98_00285 PF01653 NAD-dependent DNA ligase adenylation domain NHG98_00285 PF12826 Helix-hairpin-helix motif NHG98_00285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NHG98_00285 PF03120 NAD-dependent DNA ligase OB-fold domain NHG98_00285 PF00533 BRCA1 C Terminus (BRCT) domain NHG98_00300 PF04002 RadC-like JAB domain NHG98_00375 PF03060 Nitronate monooxygenase NHG98_00390 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NHG98_00415 PF00364 Biotin-requiring enzyme NHG98_00415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NHG98_00415 PF02817 e3 binding domain NHG98_00430 PF13662 Toprim domain NHG98_00430 PF02132 RecR protein NHG98_00445 PF00085 Thioredoxin NHG98_00455 PF03070 TENA/THI-4/PQQC family NHG98_00465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NHG98_00465 PF00809 Pterin binding enzyme NHG98_00470 PF00186 Dihydrofolate reductase NHG98_00485 PF02390 Putative methyltransferase NHG98_00490 PF00575 S1 RNA binding domain NHG98_00495 PF00216 Bacterial DNA-binding protein NHG98_00510 PF02163 Peptidase family M50 NHG98_00510 PF17820 PDZ domain NHG98_00515 PF01103 Surface antigen NHG98_00515 PF07244 Surface antigen variable number repeat NHG98_00525 PF07977 FabA-like domain NHG98_00530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_00540 PF02881 SRP54-type protein, helical bundle domain NHG98_00540 PF00448 SRP54-type protein, GTPase domain NHG98_00540 PF02978 Signal peptide binding domain NHG98_00545 PF01975 Survival protein SurE NHG98_00550 PF13393 Histidyl-tRNA synthetase NHG98_00550 PF03129 Anticodon binding domain NHG98_00560 PF00684 DnaJ central domain NHG98_00560 PF01556 DnaJ C terminal domain NHG98_00560 PF00226 DnaJ domain NHG98_00575 PF00684 DnaJ central domain NHG98_00575 PF00226 DnaJ domain NHG98_00575 PF01556 DnaJ C terminal domain NHG98_00585 PF00032 Cytochrome b(C-terminal)/b6/petD NHG98_00585 PF00033 Cytochrome b/b6/petB NHG98_00590 PF00032 Cytochrome b(C-terminal)/b6/petD NHG98_00590 PF00033 Cytochrome b/b6/petB NHG98_00590 PF02167 Cytochrome C1 family NHG98_00595 PF00271 Helicase conserved C-terminal domain NHG98_00595 PF04851 Type III restriction enzyme, res subunit NHG98_00595 PF02151 UvrB/uvrC motif NHG98_00595 PF17757 UvrB interaction domain NHG98_00595 PF12344 Ultra-violet resistance protein B NHG98_00625 PF13180 PDZ domain NHG98_00630 PF01145 SPFH domain / Band 7 family NHG98_00635 PF01145 SPFH domain / Band 7 family NHG98_00690 PF00334 Nucleoside diphosphate kinase NHG98_00700 PF00762 Ferrochelatase NHG98_00715 PF00227 Proteasome subunit NHG98_00720 PF10431 C-terminal, D2-small domain, of ClpB protein NHG98_00720 PF07724 AAA domain (Cdc48 subfamily) NHG98_00720 PF00004 ATPase family associated with various cellular activities (AAA) NHG98_00730 PF00348 Polyprenyl synthetase NHG98_00735 PF00550 Phosphopantetheine attachment site NHG98_00740 PF02801 Beta-ketoacyl synthase, C-terminal domain NHG98_00740 PF00109 Beta-ketoacyl synthase, N-terminal domain NHG98_00745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NHG98_00750 PF02511 Thymidylate synthase complementing protein NHG98_00775 PF00684 DnaJ central domain NHG98_00775 PF01556 DnaJ C terminal domain NHG98_00775 PF00226 DnaJ domain NHG98_00780 PF08245 Mur ligase middle domain NHG98_00780 PF02875 Mur ligase family, glutamate ligase domain NHG98_00795 PF03364 Polyketide cyclase / dehydrase and lipid transport NHG98_00800 PF13462 Thioredoxin NHG98_00830 PF12169 DNA polymerase III subunits gamma and tau domain III NHG98_00835 PF02575 YbaB/EbfC DNA-binding family NHG98_00840 PF13505 Outer membrane protein beta-barrel domain NHG98_00850 PF00919 Uncharacterized protein family UPF0004 NHG98_00850 PF04055 Radical SAM superfamily NHG98_00880 PF00521 DNA gyrase/topoisomerase IV, subunit A NHG98_00880 PF03989 DNA gyrase C-terminal domain, beta-propeller NHG98_00885 PF00355 Rieske [2Fe-2S] domain NHG98_00885 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NHG98_00890 PF00270 DEAD/DEAH box helicase NHG98_00890 PF17764 3′ DNA-binding domain (3′BD) NHG98_00890 PF18074 Primosomal protein N C-terminal domain NHG98_00890 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NHG98_00890 PF00271 Helicase conserved C-terminal domain NHG98_00945 PF02325 YGGT family NHG98_00950 PF01580 FtsK/SpoIIIE family NHG98_00950 PF09397 Ftsk gamma domain NHG98_00950 PF17854 FtsK alpha domain NHG98_00950 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NHG98_00965 PF04551 GcpE protein NHG98_00975 PF00206 Lyase NHG98_00975 PF10415 Fumarase C C-terminus NHG98_00985 PF00266 Aminotransferase class-V NHG98_00990 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NHG98_01000 PF00005 ABC transporter NHG98_01005 PF01521 Iron-sulphur cluster biosynthesis NHG98_01010 PF01966 HD domain NHG98_01010 PF13286 Phosphohydrolase-associated domain NHG98_01015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NHG98_01015 PF01872 RibD C-terminal domain NHG98_01025 PF16198 tRNA pseudouridylate synthase B C-terminal domain NHG98_01025 PF01509 TruB family pseudouridylate synthase (N terminal domain) NHG98_01030 PF00312 Ribosomal protein S15 NHG98_01035 PF00575 S1 RNA binding domain NHG98_01035 PF03725 3' exoribonuclease family, domain 2 NHG98_01035 PF01138 3' exoribonuclease family, domain 1 NHG98_01035 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NHG98_01035 PF00013 KH domain NHG98_01045 PF00834 Ribulose-phosphate 3 epimerase family NHG98_01050 PF13717 zinc-ribbon domain NHG98_01055 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NHG98_01055 PF14602 Hexapeptide repeat of succinyl-transferase NHG98_01055 PF00132 Bacterial transferase hexapeptide (six repeats) NHG98_01105 PF01926 50S ribosome-binding GTPase NHG98_01105 PF07650 KH domain NHG98_01115 PF00528 Binding-protein-dependent transport system inner membrane component NHG98_01120 PF01245 Ribosomal protein L19 NHG98_01125 PF01746 tRNA (Guanine-1)-methyltransferase NHG98_01130 PF01259 SAICAR synthetase NHG98_01135 PF02769 AIR synthase related protein, C-terminal domain NHG98_01135 PF00586 AIR synthase related protein, N-terminal domain NHG98_01150 PF03471 Transporter associated domain NHG98_01150 PF00571 CBS domain NHG98_01155 PF01208 Uroporphyrinogen decarboxylase (URO-D) NHG98_01160 PF00155 Aminotransferase class I and II NHG98_01175 PF00464 Serine hydroxymethyltransferase NHG98_01190 PF00749 tRNA synthetases class I (E and Q), catalytic domain NHG98_01200 PF00289 Biotin carboxylase, N-terminal domain NHG98_01200 PF00364 Biotin-requiring enzyme NHG98_01200 PF18140 Propionyl-coenzyme A carboxylase BT domain NHG98_01200 PF02785 Biotin carboxylase C-terminal domain NHG98_01200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NHG98_01205 PF02628 Cytochrome oxidase assembly protein NHG98_01225 PF00430 ATP synthase B/B' CF(0) NHG98_01230 PF00137 ATP synthase subunit C NHG98_01235 PF00119 ATP synthase A chain NHG98_01245 PF03484 tRNA synthetase B5 domain NHG98_01245 PF03483 B3/4 domain NHG98_01245 PF01588 Putative tRNA binding domain NHG98_01245 PF03147 Ferredoxin-fold anticodon binding domain NHG98_01245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NHG98_01255 PF08264 Anticodon-binding domain of tRNA NHG98_01255 PF00133 tRNA synthetases class I (I, L, M and V) NHG98_01265 PF04055 Radical SAM superfamily NHG98_01265 PF00919 Uncharacterized protein family UPF0004 NHG98_01265 PF01938 TRAM domain NHG98_01280 PF03653 Uncharacterised protein family (UPF0093) NHG98_01285 PF00676 Dehydrogenase E1 component NHG98_01315 PF02779 Transketolase, pyrimidine binding domain NHG98_01315 PF00676 Dehydrogenase E1 component NHG98_01315 PF16078 2-oxoglutarate dehydrogenase N-terminus NHG98_01315 PF16870 2-oxoglutarate dehydrogenase C-terminal NHG98_01335 PF02661 Fic/DOC family NHG98_01335 PF13784 Fic/DOC family N-terminal NHG98_01340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NHG98_01345 PF13091 PLD-like domain NHG98_01355 PF14622 Ribonuclease-III-like NHG98_01355 PF00035 Double-stranded RNA binding motif NHG98_01360 PF01180 Dihydroorotate dehydrogenase NHG98_01370 PF00586 AIR synthase related protein, N-terminal domain NHG98_01370 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NHG98_01370 PF02769 AIR synthase related protein, C-terminal domain NHG98_01390 PF17760 UvrA interaction domain NHG98_01390 PF17755 UvrA DNA-binding domain NHG98_01400 PF02875 Mur ligase family, glutamate ligase domain NHG98_01400 PF08245 Mur ligase middle domain NHG98_01405 PF01053 Cys/Met metabolism PLP-dependent enzyme NHG98_01415 PF00012 Hsp70 protein NHG98_01420 PF10150 Ribonuclease E/G family NHG98_01420 PF00575 S1 RNA binding domain NHG98_01420 PF12111 Polyribonucleotide phosphorylase C terminal NHG98_01425 PF00471 Ribosomal protein L33 NHG98_01440 PF01297 Zinc-uptake complex component A periplasmic NHG98_01445 PF00005 ABC transporter NHG98_01450 PF03109 ABC1 family NHG98_01455 PF01258 Prokaryotic dksA/traR C4-type zinc finger NHG98_01465 PF01396 Topoisomerase DNA binding C4 zinc finger NHG98_01465 PF01131 DNA topoisomerase NHG98_01465 PF01751 Toprim domain NHG98_01465 PF13368 Topoisomerase C-terminal repeat NHG98_01480 PF00364 Biotin-requiring enzyme NHG98_01480 PF02780 Transketolase, C-terminal domain NHG98_01480 PF02779 Transketolase, pyrimidine binding domain NHG98_01495 PF03477 ATP cone domain NHG98_01495 PF02867 Ribonucleotide reductase, barrel domain NHG98_01495 PF00317 Ribonucleotide reductase, all-alpha domain NHG98_01500 PF01209 ubiE/COQ5 methyltransferase family NHG98_01525 PF00468 Ribosomal protein L34 NHG98_01530 PF00528 Binding-protein-dependent transport system inner membrane component NHG98_01535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NHG98_01535 PF02874 ATP synthase alpha/beta family, beta-barrel domain NHG98_01540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NHG98_01550 PF00923 Transaldolase/Fructose-6-phosphate aldolase NHG98_01555 PF00478 IMP dehydrogenase / GMP reductase domain NHG98_01555 PF00571 CBS domain NHG98_01560 PF00398 Ribosomal RNA adenine dimethylase NHG98_01570 PF00121 Triosephosphate isomerase NHG98_01575 PF17782 DprA winged helix domain NHG98_01575 PF02481 DNA recombination-mediator protein A NHG98_01580 PF00037 4Fe-4S binding domain NHG98_01580 PF11953 Domain of unknown function (DUF3470) NHG98_01595 PF01820 D-ala D-ala ligase N-terminus NHG98_01595 PF07478 D-ala D-ala ligase C-terminus NHG98_01600 PF08478 POTRA domain, FtsQ-type NHG98_01600 PF03799 Cell division protein FtsQ NHG98_01615 PF02789 Cytosol aminopeptidase family, N-terminal domain NHG98_01615 PF00883 Cytosol aminopeptidase family, catalytic domain NHG98_01625 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NHG98_01625 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NHG98_01625 PF00384 Molybdopterin oxidoreductase NHG98_01630 PF00146 NADH dehydrogenase NHG98_01635 PF00490 Delta-aminolevulinic acid dehydratase NHG98_01645 PF02091 Glycyl-tRNA synthetase alpha subunit NHG98_01650 PF02092 Glycyl-tRNA synthetase beta subunit NHG98_01650 PF05746 DALR anticodon binding domain NHG98_01655 PF08459 UvrC Helix-hairpin-helix N-terminal NHG98_01655 PF02151 UvrB/uvrC motif NHG98_01655 PF01541 GIY-YIG catalytic domain NHG98_01665 PF00677 Lumazine binding domain NHG98_01675 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NHG98_01675 PF01409 tRNA synthetases class II core domain (F) NHG98_01680 PF14602 Hexapeptide repeat of succinyl-transferase NHG98_01680 PF12804 MobA-like NTP transferase domain NHG98_01680 PF00132 Bacterial transferase hexapeptide (six repeats) NHG98_01685 PF00829 Ribosomal prokaryotic L21 protein NHG98_01690 PF01016 Ribosomal L27 protein NHG98_01700 PF00438 S-adenosylmethionine synthetase, N-terminal domain NHG98_01700 PF02772 S-adenosylmethionine synthetase, central domain NHG98_01700 PF02773 S-adenosylmethionine synthetase, C-terminal domain NHG98_01705 PF03070 TENA/THI-4/PQQC family NHG98_01715 PF00510 Cytochrome c oxidase subunit III NHG98_01720 PF02075 Crossover junction endodeoxyribonuclease RuvC NHG98_01725 PF03652 Holliday junction resolvase NHG98_01745 PF03717 Penicillin-binding Protein dimerisation domain NHG98_01745 PF00905 Penicillin binding protein transpeptidase domain NHG98_01750 PF01522 Polysaccharide deacetylase NHG98_01750 PF03422 Carbohydrate binding module (family 6) NHG98_01750 PF00457 Glycosyl hydrolases family 11 NHG98_01755 PF13335 Magnesium chelatase, subunit ChlI C-terminal NHG98_01755 PF01078 Magnesium chelatase, subunit ChlI NHG98_01765 PF00091 Tubulin/FtsZ family, GTPase domain NHG98_01765 PF12327 FtsZ family, C-terminal domain NHG98_01780 PF02130 Uncharacterized protein family UPF0054 NHG98_01785 PF13085 2Fe-2S iron-sulfur cluster binding domain NHG98_01800 PF04608 Phosphatidylglycerophosphatase A NHG98_01805 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NHG98_01805 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NHG98_01810 PF00486 Transcriptional regulatory protein, C terminal NHG98_01810 PF00072 Response regulator receiver domain NHG98_01830 PF01702 Queuine tRNA-ribosyltransferase NHG98_01840 PF00675 Insulinase (Peptidase family M16) NHG98_01840 PF05193 Peptidase M16 inactive domain NHG98_01845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NHG98_01845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NHG98_01865 PF00588 SpoU rRNA Methylase family NHG98_01865 PF08032 RNA 2'-O ribose methyltransferase substrate binding NHG98_01870 PF01027 Inhibitor of apoptosis-promoting Bax1 NHG98_01875 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NHG98_01890 PF00579 tRNA synthetases class I (W and Y) NHG98_01910 PF00293 NUDIX domain NHG98_01915 PF01026 TatD related DNase NHG98_01920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NHG98_01920 PF00056 lactate/malate dehydrogenase, NAD binding domain NHG98_01925 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NHG98_01930 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NHG98_01935 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NHG98_01940 PF01230 HIT domain NHG98_01950 PF08245 Mur ligase middle domain NHG98_01950 PF02875 Mur ligase family, glutamate ligase domain NHG98_01950 PF01225 Mur ligase family, catalytic domain NHG98_01955 PF01370 NAD dependent epimerase/dehydratase family NHG98_01955 PF08338 Domain of unknown function (DUF1731) NHG98_01980 PF01751 Toprim domain NHG98_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NHG98_01980 PF00204 DNA gyrase B NHG98_01980 PF00986 DNA gyrase B subunit, carboxyl terminus NHG98_01985 PF02630 SCO1/SenC NHG98_01990 PF00929 Exonuclease NHG98_02000 PF02556 Preprotein translocase subunit SecB NHG98_02010 PF00694 Aconitase C-terminal domain NHG98_02010 PF00330 Aconitase family (aconitate hydratase) NHG98_02015 PF14850 DNA-binding domain of Proline dehydrogenase NHG98_02015 PF00171 Aldehyde dehydrogenase family NHG98_02015 PF01619 Proline dehydrogenase NHG98_02015 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NHG98_02025 PF00183 Hsp90 protein NHG98_02035 PF00155 Aminotransferase class I and II NHG98_02045 PF09285 Elongation factor P, C-terminal NHG98_02045 PF08207 Elongation factor P (EF-P) KOW-like domain NHG98_02045 PF01132 Elongation factor P (EF-P) OB domain NHG98_02050 PF01782 RimM N-terminal domain NHG98_02050 PF05239 PRC-barrel domain NHG98_02055 PF00202 Aminotransferase class-III NHG98_02060 PF00512 His Kinase A (phospho-acceptor) domain NHG98_02060 PF00989 PAS fold NHG98_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NHG98_02070 PF00216 Bacterial DNA-binding protein NHG98_02080 PF01551 Peptidase family M23 NHG98_02085 PF00133 tRNA synthetases class I (I, L, M and V) NHG98_02085 PF13603 Leucyl-tRNA synthetase, Domain 2 NHG98_02085 PF09334 tRNA synthetases class I (M) NHG98_02085 PF08264 Anticodon-binding domain of tRNA NHG98_02095 PF02463 RecF/RecN/SMC N terminal domain NHG98_02100 PF00578 AhpC/TSA family NHG98_02105 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NHG98_02105 PF00476 DNA polymerase family A NHG98_02105 PF01367 5'-3' exonuclease, C-terminal SAM fold NHG98_02135 PF01523 Putative modulator of DNA gyrase NHG98_02145 PF00285 Citrate synthase, C-terminal domain NHG98_02150 PF01649 Ribosomal protein S20 NHG98_02160 PF02899 Phage integrase, N-terminal SAM-like domain NHG98_02160 PF00589 Phage integrase family NHG98_02175 PF01594 AI-2E family transporter NHG98_02185 PF02542 YgbB family NHG98_02185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NHG98_02210 PF00005 ABC transporter NHG98_02220 PF01336 OB-fold nucleic acid binding domain NHG98_02220 PF00152 tRNA synthetases class II (D, K and N) NHG98_02220 PF02938 GAD domain NHG98_02225 PF01183 Glycosyl hydrolases family 25 NHG98_02230 PF00083 Sugar (and other) transporter NHG98_02230 PF08946 Osmosensory transporter coiled coil NHG98_02235 PF01479 S4 domain NHG98_02235 PF00849 RNA pseudouridylate synthase NHG98_02245 PF02896 PEP-utilising enzyme, TIM barrel domain NHG98_02245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NHG98_02245 PF00391 PEP-utilising enzyme, mobile domain NHG98_02255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NHG98_02255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NHG98_02255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NHG98_02255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NHG98_02290 PF06421 GTP-binding protein LepA C-terminus NHG98_02290 PF03144 Elongation factor Tu domain 2 NHG98_02290 PF00009 Elongation factor Tu GTP binding domain NHG98_02290 PF14492 Elongation Factor G, domain II NHG98_02290 PF00679 Elongation factor G C-terminus NHG98_02315 PF01018 GTP1/OBG NHG98_02315 PF01926 50S ribosome-binding GTPase NHG98_02320 PF03952 Enolase, N-terminal domain NHG98_02320 PF00113 Enolase, C-terminal TIM barrel domain NHG98_02330 PF08245 Mur ligase middle domain NHG98_02330 PF02875 Mur ligase family, glutamate ligase domain NHG98_02330 PF01225 Mur ligase family, catalytic domain NHG98_02335 PF03330 Lytic transglycolase NHG98_02355 PF01790 Prolipoprotein diacylglyceryl transferase NHG98_02360 PF01668 SmpB protein NHG98_02405 PF08240 Alcohol dehydrogenase GroES-like domain NHG98_02405 PF00107 Zinc-binding dehydrogenase NHG98_02410 PF02401 LytB protein NHG98_02415 PF03717 Penicillin-binding Protein dimerisation domain NHG98_02415 PF00905 Penicillin binding protein transpeptidase domain NHG98_02440 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_02445 PF09312 SurA N-terminal domain NHG98_02445 PF00639 PPIC-type PPIASE domain NHG98_02460 PF00719 Inorganic pyrophosphatase NHG98_02485 PF00691 OmpA family NHG98_02490 PF01171 PP-loop family NHG98_02495 PF01434 Peptidase family M41 NHG98_02495 PF17862 AAA+ lid domain NHG98_02495 PF00004 ATPase family associated with various cellular activities (AAA) NHG98_02495 PF06480 FtsH Extracellular NHG98_02525 PF00210 Ferritin-like domain NHG98_02530 PF02104 SURF1 family NHG98_02535 PF00999 Sodium/hydrogen exchanger family NHG98_02535 PF02254 TrkA-N domain NHG98_02545 PF02223 Thymidylate kinase NHG98_02555 PF01134 Glucose inhibited division protein A NHG98_02555 PF13932 GidA associated domain NHG98_02560 PF01321 Creatinase/Prolidase N-terminal domain NHG98_02560 PF00557 Metallopeptidase family M24 NHG98_02595 PF02355 Protein export membrane protein NHG98_02600 PF03900 Porphobilinogen deaminase, C-terminal domain NHG98_02600 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NHG98_02605 PF01565 FAD binding domain NHG98_02605 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NHG98_02625 PF13520 Amino acid permease NHG98_02630 PF13520 Amino acid permease NHG98_02640 PF02774 Semialdehyde dehydrogenase, dimerisation domain NHG98_02640 PF01118 Semialdehyde dehydrogenase, NAD binding domain NHG98_02645 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NHG98_02645 PF02222 ATP-grasp domain NHG98_02650 PF04379 ApaG domain NHG98_02660 PF00528 Binding-protein-dependent transport system inner membrane component NHG98_02665 PF17773 UPF0176 acylphosphatase like domain NHG98_02665 PF00581 Rhodanese-like domain NHG98_02690 PF10609 NUBPL iron-transfer P-loop NTPase NHG98_02695 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NHG98_02695 PF02542 YgbB family NHG98_02700 PF01494 FAD binding domain NHG98_02720 PF01467 Cytidylyltransferase-like NHG98_02735 PF01255 Putative undecaprenyl diphosphate synthase NHG98_02745 PF01765 Ribosome recycling factor NHG98_02750 PF00696 Amino acid kinase family NHG98_02755 PF00889 Elongation factor TS NHG98_02760 PF00318 Ribosomal protein S2 NHG98_02770 PF02699 Preprotein translocase subunit NHG98_02775 PF01380 SIS domain NHG98_02805 PF00551 Formyl transferase NHG98_02815 PF05193 Peptidase M16 inactive domain NHG98_02815 PF00675 Insulinase (Peptidase family M16) NHG98_02820 PF01252 Signal peptidase (SPase) II NHG98_02825 PF01687 Riboflavin kinase NHG98_02825 PF06574 FAD synthetase NHG98_02830 PF00462 Glutaredoxin NHG98_02845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NHG98_02845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NHG98_02850 PF02504 Fatty acid synthesis protein NHG98_02855 PF01783 Ribosomal L32p protein family NHG98_02865 PF01183 Glycosyl hydrolases family 25 NHG98_02865 PF08239 Bacterial SH3 domain NHG98_02905 PF13288 DXP reductoisomerase C-terminal domain NHG98_02905 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NHG98_02905 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NHG98_02915 PF00005 ABC transporter NHG98_02920 PF02405 Permease MlaE NHG98_02955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NHG98_02980 PF01551 Peptidase family M23 NHG98_02980 PF01476 LysM domain NHG98_02980 PF08525 Opacity-associated protein A N-terminal motif NHG98_02985 PF01709 Transcriptional regulator NHG98_02990 PF13525 Outer membrane lipoprotein NHG98_03000 PF01066 CDP-alcohol phosphatidyltransferase NHG98_03005 PF01515 Phosphate acetyl/butaryl transferase NHG98_03005 PF03949 Malic enzyme, NAD binding domain NHG98_03005 PF00390 Malic enzyme, N-terminal domain NHG98_03015 PF00462 Glutaredoxin NHG98_03020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NHG98_03025 PF08275 DNA primase catalytic core, N-terminal domain NHG98_03025 PF13662 Toprim domain NHG98_03025 PF01807 CHC2 zinc finger NHG98_03030 PF08241 Methyltransferase domain NHG98_03115 PF17761 DUF1016 N-terminal domain NHG98_03115 PF06250 YhcG PDDEXK nuclease domain NHG98_03135 PF01555 DNA methylase NHG98_03215 PF04984 Phage tail sheath protein subtilisin-like domain NHG98_03215 PF17482 Phage tail sheath C-terminal domain NHG98_03320 PF01121 Dephospho-CoA kinase NHG98_03365 PF08264 Anticodon-binding domain of tRNA NHG98_03365 PF09334 tRNA synthetases class I (M) NHG98_03390 PF03796 DnaB-like helicase C terminal domain NHG98_03390 PF00772 DnaB-like helicase N terminal domain NHG98_03400 PF06271 RDD family NHG98_03405 PF01921 tRNA synthetases class I (K) NHG98_03415 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NHG98_03420 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NHG98_03425 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NHG98_03430 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NHG98_03435 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NHG98_03465 PF08245 Mur ligase middle domain NHG98_03475 PF00111 2Fe-2S iron-sulfur cluster binding domain NHG98_03485 PF03918 Cytochrome C biogenesis protein NHG98_03495 PF00749 tRNA synthetases class I (E and Q), catalytic domain NHG98_03505 PF00533 BRCA1 C Terminus (BRCT) domain NHG98_03505 PF01653 NAD-dependent DNA ligase adenylation domain NHG98_03505 PF03120 NAD-dependent DNA ligase OB-fold domain NHG98_03505 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NHG98_03505 PF12826 Helix-hairpin-helix motif NHG98_03510 PF00701 Dihydrodipicolinate synthetase family NHG98_03515 PF00436 Single-strand binding protein family NHG98_03545 PF00005 ABC transporter NHG98_03545 PF00664 ABC transporter transmembrane region NHG98_03550 PF01541 GIY-YIG catalytic domain NHG98_03555 PF00814 Glycoprotease family NHG98_03585 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NHG98_03590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NHG98_03600 PF01050 Mannose-6-phosphate isomerase NHG98_03600 PF00483 Nucleotidyl transferase NHG98_03605 PF00483 Nucleotidyl transferase NHG98_03605 PF01050 Mannose-6-phosphate isomerase NHG98_03615 PF12704 MacB-like periplasmic core domain NHG98_03615 PF02687 FtsX-like permease family NHG98_03630 PF00231 ATP synthase NHG98_03635 PF01523 Putative modulator of DNA gyrase NHG98_03640 PF00313 'Cold-shock' DNA-binding domain NHG98_03645 PF00271 Helicase conserved C-terminal domain NHG98_03645 PF00270 DEAD/DEAH box helicase NHG98_03650 PF07724 AAA domain (Cdc48 subfamily) NHG98_03650 PF02861 Clp amino terminal domain, pathogenicity island component NHG98_03650 PF00004 ATPase family associated with various cellular activities (AAA) NHG98_03650 PF10431 C-terminal, D2-small domain, of ClpB protein NHG98_03650 PF17871 AAA lid domain NHG98_03655 PF01791 DeoC/LacD family aldolase NHG98_03670 PF18073 Rubredoxin metal binding domain NHG98_03685 PF00448 SRP54-type protein, GTPase domain NHG98_03685 PF02881 SRP54-type protein, helical bundle domain NHG98_03690 PF01592 NifU-like N terminal domain NHG98_03695 PF01521 Iron-sulphur cluster biosynthesis NHG98_03700 PF07743 HSCB C-terminal oligomerisation domain NHG98_03700 PF00226 DnaJ domain NHG98_03705 PF00012 Hsp70 protein NHG98_03710 PF10502 Signal peptidase, peptidase S26 NHG98_03715 PF00162 Phosphoglycerate kinase NHG98_03725 PF00849 RNA pseudouridylate synthase NHG98_03735 PF00753 Metallo-beta-lactamase superfamily NHG98_03735 PF03772 Competence protein NHG98_03755 PF02142 MGS-like domain NHG98_03755 PF01808 AICARFT/IMPCHase bienzyme NHG98_03760 PF02911 Formyl transferase, C-terminal domain NHG98_03760 PF00551 Formyl transferase NHG98_03765 PF00453 Ribosomal protein L20 NHG98_03770 PF01632 Ribosomal protein L35 NHG98_03780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NHG98_03780 PF01411 tRNA synthetases class II (A) NHG98_03780 PF02272 DHHA1 domain NHG98_03790 PF01425 Amidase NHG98_03805 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NHG98_03805 PF01676 Metalloenzyme superfamily NHG98_03815 PF00698 Acyl transferase domain NHG98_03820 PF01197 Ribosomal protein L31 NHG98_03825 PF01513 ATP-NAD kinase NHG98_03845 PF07992 Pyridine nucleotide-disulphide oxidoreductase NHG98_03855 PF01926 50S ribosome-binding GTPase NHG98_03855 PF12631 MnmE helical domain NHG98_03855 PF10396 GTP-binding protein TrmE N-terminus NHG98_03860 PF12838 4Fe-4S dicluster domain NHG98_03865 PF16198 tRNA pseudouridylate synthase B C-terminal domain NHG98_03865 PF01509 TruB family pseudouridylate synthase (N terminal domain) NHG98_03870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NHG98_03870 PF03129 Anticodon binding domain NHG98_03870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NHG98_03875 PF05198 Translation initiation factor IF-3, N-terminal domain NHG98_03875 PF00707 Translation initiation factor IF-3, C-terminal domain NHG98_03880 PF10531 SLBB domain NHG98_03880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NHG98_03880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NHG98_03905 PF03100 CcmE NHG98_03915 PF03099 Biotin/lipoate A/B protein ligase family NHG98_03915 PF08279 HTH domain NHG98_03915 PF02237 Biotin protein ligase C terminal domain NHG98_03920 PF00361 Proton-conducting membrane transporter NHG98_03925 PF00361 Proton-conducting membrane transporter NHG98_03930 PF00361 Proton-conducting membrane transporter NHG98_03930 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NHG98_03935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NHG98_03940 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NHG98_03950 PF00580 UvrD/REP helicase N-terminal domain NHG98_03950 PF13361 UvrD-like helicase C-terminal domain NHG98_03965 PF00034 Cytochrome c NHG98_03970 PF01546 Peptidase family M20/M25/M40 NHG98_03970 PF07687 Peptidase dimerisation domain NHG98_03975 PF13685 Iron-containing alcohol dehydrogenase NHG98_03985 PF10397 Adenylosuccinate lyase C-terminus NHG98_03985 PF00206 Lyase NHG98_03990 PF01281 Ribosomal protein L9, N-terminal domain NHG98_03990 PF03948 Ribosomal protein L9, C-terminal domain NHG98_03995 PF01084 Ribosomal protein S18 NHG98_04000 PF01250 Ribosomal protein S6 NHG98_04005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NHG98_04005 PF07733 Bacterial DNA polymerase III alpha NTPase domain NHG98_04005 PF02811 PHP domain NHG98_04005 PF14579 Helix-hairpin-helix motif NHG98_04015 PF00266 Aminotransferase class-V NHG98_04025 PF02016 LD-carboxypeptidase N-terminal domain NHG98_04025 PF17676 LD-carboxypeptidase C-terminal domain NHG98_04030 PF03099 Biotin/lipoate A/B protein ligase family NHG98_04035 PF04860 Phage portal protein NHG98_04045 PF12631 MnmE helical domain NHG98_04045 PF10396 GTP-binding protein TrmE N-terminus NHG98_04045 PF01926 50S ribosome-binding GTPase NHG98_04050 PF03023 Lipid II flippase MurJ NHG98_04080 PF00133 tRNA synthetases class I (I, L, M and V) NHG98_04080 PF08264 Anticodon-binding domain of tRNA NHG98_04100 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NHG98_04120 PF02646 RmuC family NHG98_04130 PF00005 ABC transporter NHG98_04135 PF05173 Dihydrodipicolinate reductase, C-terminus NHG98_04135 PF01113 Dihydrodipicolinate reductase, N-terminus NHG98_04155 PF00950 ABC 3 transport family NHG98_04165 PF00288 GHMP kinases N terminal domain NHG98_04165 PF08544 GHMP kinases C terminal NHG98_04170 PF12705 PD-(D/E)XK nuclease superfamily NHG98_04170 PF00580 UvrD/REP helicase N-terminal domain NHG98_04170 PF13361 UvrD-like helicase C-terminal domain NHG98_04190 PF04002 RadC-like JAB domain NHG98_04205 PF00768 D-alanyl-D-alanine carboxypeptidase NHG98_04205 PF07943 Penicillin-binding protein 5, C-terminal domain NHG98_04210 PF00893 Small Multidrug Resistance protein NHG98_04215 PF00893 Small Multidrug Resistance protein NHG98_04235 PF00571 CBS domain NHG98_04235 PF03448 MgtE intracellular N domain NHG98_04235 PF01769 Divalent cation transporter NHG98_04245 PF02386 Cation transport protein NHG98_04260 PF00692 dUTPase NHG98_04280 PF07690 Major Facilitator Superfamily NHG98_04290 PF02780 Transketolase, C-terminal domain NHG98_04290 PF00456 Transketolase, thiamine diphosphate binding domain NHG98_04290 PF02779 Transketolase, pyrimidine binding domain NHG98_04295 PF01479 S4 domain NHG98_04295 PF00163 Ribosomal protein S4/S9 N-terminal domain NHG98_04305 PF04384 Iron-sulphur cluster assembly NHG98_04315 PF00830 Ribosomal L28 family NHG98_04320 PF04055 Radical SAM superfamily NHG98_04320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NHG98_04325 PF01209 ubiE/COQ5 methyltransferase family NHG98_04330 PF01098 Cell cycle protein NHG98_04345 PF00750 tRNA synthetases class I (R) NHG98_04345 PF03485 Arginyl tRNA synthetase N terminal domain NHG98_04345 PF05746 DALR anticodon binding domain NHG98_04355 PF00005 ABC transporter NHG98_04355 PF00664 ABC transporter transmembrane region NHG98_04365 PF00696 Amino acid kinase family NHG98_04370 PF01926 50S ribosome-binding GTPase NHG98_04375 PF03462 PCRF domain NHG98_04375 PF00472 RF-1 domain NHG98_04395 PF00444 Ribosomal protein L36 NHG98_04400 PF03618 Kinase/pyrophosphorylase NHG98_04405 PF01578 Cytochrome C assembly protein NHG98_04415 PF00709 Adenylosuccinate synthetase NHG98_04425 PF01176 Translation initiation factor 1A / IF-1 NHG98_04430 PF02545 Maf-like protein NHG98_04440 PF07676 WD40-like Beta Propeller Repeat NHG98_04440 PF04052 TolB amino-terminal domain NHG98_04445 PF17770 Ribonuclease J C-terminal domain NHG98_04445 PF12706 Beta-lactamase superfamily domain NHG98_04445 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NHG98_04450 PF00226 DnaJ domain NHG98_04450 PF00684 DnaJ central domain NHG98_04450 PF01556 DnaJ C terminal domain NHG98_04470 PF01624 MutS domain I NHG98_04470 PF00488 MutS domain V NHG98_04470 PF05190 MutS family domain IV NHG98_04470 PF05192 MutS domain III NHG98_04470 PF05188 MutS domain II NHG98_04480 PF02661 Fic/DOC family NHG98_04480 PF13784 Fic/DOC family N-terminal NHG98_04485 PF03471 Transporter associated domain NHG98_04485 PF03741 Integral membrane protein TerC family NHG98_04490 PF00117 Glutamine amidotransferase class-I NHG98_04490 PF00958 GMP synthase C terminal domain NHG98_04490 PF02540 NAD synthase NHG98_04505 PF02810 SEC-C motif NHG98_04505 PF07517 SecA DEAD-like domain NHG98_04505 PF01043 SecA preprotein cross-linking domain NHG98_04505 PF07516 SecA Wing and Scaffold domain NHG98_04540 PF01235 Sodium:alanine symporter family NHG98_04555 PF00118 TCP-1/cpn60 chaperonin family NHG98_04560 PF00166 Chaperonin 10 Kd subunit NHG98_04565 PF01571 Aminomethyltransferase folate-binding domain NHG98_04570 PF00692 dUTPase NHG98_04590 PF01029 NusB family NHG98_04595 PF00885 6,7-dimethyl-8-ribityllumazine synthase NHG98_04600 PF14849 YidC periplasmic domain NHG98_04600 PF02096 60Kd inner membrane protein NHG98_04610 PF02355 Protein export membrane protein NHG98_04610 PF07549 SecD/SecF GG Motif NHG98_04615 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NHG98_04615 PF01578 Cytochrome C assembly protein NHG98_04625 PF01979 Amidohydrolase family NHG98_04630 PF00375 Sodium:dicarboxylate symporter family NHG98_04635 PF00156 Phosphoribosyl transferase domain NHG98_04640 PF03144 Elongation factor Tu domain 2 NHG98_04640 PF00009 Elongation factor Tu GTP binding domain NHG98_04640 PF00679 Elongation factor G C-terminus NHG98_04680 PF12796 Ankyrin repeats (3 copies) NHG98_04680 PF13606 Ankyrin repeat NHG98_04715 PF13276 HTH-like domain NHG98_04715 PF00665 Integrase core domain NHG98_04715 PF13333 Integrase core domain NHG98_04720 PF07499 RuvA, C-terminal domain NHG98_04720 PF01330 RuvA N terminal domain NHG98_04725 PF05491 RuvB C-terminal winged helix domain NHG98_04725 PF05496 Holliday junction DNA helicase RuvB P-loop domain NHG98_04725 PF17864 RuvB AAA lid domain NHG98_04750 PF02245 Methylpurine-DNA glycosylase (MPG) NHG98_04755 PF13537 Glutamine amidotransferase domain NHG98_04755 PF00156 Phosphoribosyl transferase domain NHG98_04760 PF01098 Cell cycle protein NHG98_04765 PF00361 Proton-conducting membrane transporter NHG98_04785 PF01351 Ribonuclease HII NHG98_04790 PF00953 Glycosyl transferase family 4 NHG98_04795 PF03232 Ubiquinone biosynthesis protein COQ7 NHG98_04805 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NHG98_04805 PF01926 50S ribosome-binding GTPase NHG98_04815 PF01039 Carboxyl transferase domain NHG98_04835 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NHG98_04835 PF06827 Zinc finger found in FPG and IleRS NHG98_04835 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NHG98_04840 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NHG98_04840 PF01243 Pyridoxamine 5'-phosphate oxidase NHG98_04855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NHG98_04855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NHG98_04865 PF07497 Rho termination factor, RNA-binding domain NHG98_04865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NHG98_04865 PF07498 Rho termination factor, N-terminal domain NHG98_04875 PF00639 PPIC-type PPIASE domain NHG98_04880 PF00886 Ribosomal protein S16 NHG98_04885 PF00348 Polyprenyl synthetase NHG98_04890 PF01025 GrpE NHG98_04895 PF00579 tRNA synthetases class I (W and Y) NHG98_04915 PF06418 CTP synthase N-terminus NHG98_04915 PF00117 Glutamine amidotransferase class-I NHG98_04925 PF14437 MafB19-like deaminase NHG98_04960 PF03631 Virulence factor BrkB NHG98_04965 PF00106 short chain dehydrogenase NHG98_04985 PF00005 ABC transporter NHG98_04990 PF02416 mttA/Hcf106 family NHG98_05000 PF06055 Exopolysaccharide synthesis, ExoD NHG98_05005 PF01406 tRNA synthetases class I (C) catalytic domain NHG98_05005 PF09190 DALR domain NHG98_05025 PF02934 GatB/GatE catalytic domain NHG98_05025 PF02637 GatB domain NHG98_05045 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NHG98_05055 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NHG98_05055 PF00117 Glutamine amidotransferase class-I NHG98_05070 PF00009 Elongation factor Tu GTP binding domain NHG98_05070 PF03143 Elongation factor Tu C-terminal domain NHG98_05070 PF03144 Elongation factor Tu domain 2 NHG98_05075 PF00338 Ribosomal protein S10p/S20e NHG98_05080 PF00297 Ribosomal protein L3 NHG98_05085 PF00573 Ribosomal protein L4/L1 family NHG98_05090 PF00276 Ribosomal protein L23 NHG98_05095 PF00181 Ribosomal Proteins L2, RNA binding domain NHG98_05095 PF03947 Ribosomal Proteins L2, C-terminal domain NHG98_05100 PF00203 Ribosomal protein S19 NHG98_05105 PF00237 Ribosomal protein L22p/L17e NHG98_05110 PF00189 Ribosomal protein S3, C-terminal domain NHG98_05110 PF07650 KH domain NHG98_05115 PF00252 Ribosomal protein L16p/L10e NHG98_05120 PF00831 Ribosomal L29 protein NHG98_05125 PF00366 Ribosomal protein S17 NHG98_05130 PF00238 Ribosomal protein L14p/L23e NHG98_05135 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NHG98_05140 PF00281 Ribosomal protein L5 NHG98_05140 PF00673 ribosomal L5P family C-terminus NHG98_05145 PF00253 Ribosomal protein S14p/S29e NHG98_05150 PF00410 Ribosomal protein S8 NHG98_05155 PF00347 Ribosomal protein L6 NHG98_05160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NHG98_05165 PF00333 Ribosomal protein S5, N-terminal domain NHG98_05165 PF03719 Ribosomal protein S5, C-terminal domain NHG98_05170 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NHG98_05175 PF00344 SecY translocase NHG98_05185 PF00416 Ribosomal protein S13/S18 NHG98_05190 PF00411 Ribosomal protein S11 NHG98_05195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NHG98_05195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NHG98_05195 PF01000 RNA polymerase Rpb3/RpoA insert domain NHG98_05200 PF01196 Ribosomal protein L17 NHG98_05205 PF02021 Uncharacterised protein family UPF0102 NHG98_05210 PF00213 ATP synthase delta (OSCP) subunit NHG98_05215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NHG98_05215 PF00306 ATP synthase alpha/beta chain, C terminal domain NHG98_05215 PF02874 ATP synthase alpha/beta family, beta-barrel domain NHG98_05220 PF01272 Transcription elongation factor, GreA/GreB, C-term NHG98_05220 PF03449 Transcription elongation factor, N-terminal NHG98_05225 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NHG98_05225 PF00925 GTP cyclohydrolase II NHG98_05245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NHG98_05245 PF00529 HlyD membrane-fusion protein of T1SS NHG98_05250 PF09556 HaeIII restriction endonuclease NHG98_05260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NHG98_05260 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NHG98_05265 PF00115 Cytochrome C and Quinol oxidase polypeptide I NHG98_05270 PF01040 UbiA prenyltransferase family NHG98_05275 PF00075 RNase H NHG98_05295 PF00902 Sec-independent protein translocase protein (TatC) NHG98_05300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NHG98_05300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NHG98_05315 PF01743 Poly A polymerase head domain NHG98_05315 PF12627 Probable RNA and SrmB- binding site of polymerase A NHG98_05315 PF13735 tRNA nucleotidyltransferase domain 2 putative NHG98_05325 PF06071 Protein of unknown function (DUF933) NHG98_05325 PF01926 50S ribosome-binding GTPase NHG98_05340 PF00625 Guanylate kinase NHG98_05350 PF02910 Fumarate reductase flavoprotein C-term NHG98_05350 PF00890 FAD binding domain NHG98_05355 PF14572 Phosphoribosyl synthetase-associated domain NHG98_05355 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NHG98_05360 PF02686 Glu-tRNAGln amidotransferase C subunit NHG98_05380 PF01195 Peptidyl-tRNA hydrolase NHG98_05385 PF01386 Ribosomal L25p family NHG98_05385 PF14693 Ribosomal protein TL5, C-terminal domain NHG98_05400 PF01795 MraW methylase family NHG98_05405 PF07690 Major Facilitator Superfamily NHG98_05405 PF00083 Sugar (and other) transporter NHG98_05410 PF00557 Metallopeptidase family M24 NHG98_05420 PF02491 SHS2 domain inserted in FTSA NHG98_05425 PF01327 Polypeptide deformylase NHG98_05430 PF03167 Uracil DNA glycosylase superfamily NHG98_05500 PF01728 FtsJ-like methyltransferase NHG98_05515 PF00572 Ribosomal protein L13 NHG98_05520 PF00380 Ribosomal protein S9/S16 NHG98_05530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NHG98_05535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NHG98_05535 PF00364 Biotin-requiring enzyme NHG98_05535 PF02817 e3 binding domain NHG98_05545 PF07690 Major Facilitator Superfamily NHG98_05545 PF00083 Sugar (and other) transporter NHG98_05595 PF04545 Sigma-70, region 4 NHG98_05595 PF04546 Sigma-70, non-essential region NHG98_05595 PF03979 Sigma-70 factor, region 1.1 NHG98_05595 PF00140 Sigma-70 factor, region 1.2 NHG98_05595 PF04542 Sigma-70 region 2 NHG98_05595 PF04539 Sigma-70 region 3 NHG98_05600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NHG98_05610 PF00361 Proton-conducting membrane transporter NHG98_05610 PF13244 Domain of unknown function (DUF4040) NHG98_05610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NHG98_05615 PF03334 Na+/H+ antiporter subunit NHG98_05625 PF01192 RNA polymerase Rpb6 NHG98_05635 PF00731 AIR carboxylase NHG98_05640 PF08676 MutL C terminal dimerisation domain NHG98_05640 PF01119 DNA mismatch repair protein, C-terminal domain NHG98_05675 PF00361 Proton-conducting membrane transporter NHG98_05695 PF01300 Telomere recombination NHG98_05715 PF00270 DEAD/DEAH box helicase NHG98_05715 PF00271 Helicase conserved C-terminal domain NHG98_05715 PF17191 RecG wedge domain NHG98_05755 PF02565 Recombination protein O C terminal NHG98_05755 PF11967 Recombination protein O N terminal NHG98_05780 PF00268 Ribonucleotide reductase, small chain NHG98_05790 PF00814 Glycoprotease family NHG98_05800 PF00596 Class II Aldolase and Adducin N-terminal domain NHG98_05805 PF00570 HRDC domain NHG98_05805 PF01612 3'-5' exonuclease NHG98_05835 PF00176 SNF2 family N-terminal domain NHG98_05835 PF00271 Helicase conserved C-terminal domain NHG98_05835 PF12419 SNF2 Helicase protein NHG98_05860 PF00990 Diguanylate cyclase, GGDEF domain NHG98_05860 PF00072 Response regulator receiver domain NHG98_05870 PF05088 Bacterial NAD-glutamate dehydrogenase NHG98_05875 PF10431 C-terminal, D2-small domain, of ClpB protein NHG98_05875 PF00004 ATPase family associated with various cellular activities (AAA) NHG98_05875 PF07724 AAA domain (Cdc48 subfamily) NHG98_05875 PF17871 AAA lid domain NHG98_05875 PF02861 Clp amino terminal domain, pathogenicity island component NHG98_05890 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NHG98_05895 PF01368 DHH family NHG98_05895 PF17768 RecJ OB domain NHG98_05895 PF02272 DHHA1 domain NHG98_05900 PF13840 ACT domain NHG98_05900 PF01842 ACT domain NHG98_05900 PF00696 Amino acid kinase family NHG98_05915 PF03129 Anticodon binding domain NHG98_05915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NHG98_05920 PF01648 4'-phosphopantetheinyl transferase superfamily NHG98_05945 PF10576 Iron-sulfur binding domain of endonuclease III NHG98_05945 PF00633 Helix-hairpin-helix motif NHG98_05945 PF00730 HhH-GPD superfamily base excision DNA repair protein NHG98_05950 PF00180 Isocitrate/isopropylmalate dehydrogenase NHG98_05950 PF18324 Hypothetical protein TT1725 NHG98_05965 PF04545 Sigma-70, region 4 NHG98_05965 PF00140 Sigma-70 factor, region 1.2 NHG98_05965 PF04542 Sigma-70 region 2 NHG98_05975 PF02768 DNA polymerase III beta subunit, C-terminal domain NHG98_05975 PF02767 DNA polymerase III beta subunit, central domain NHG98_05975 PF00712 DNA polymerase III beta subunit, N-terminal domain NHG98_05980 PF01416 tRNA pseudouridine synthase NHG98_05985 PF00154 recA bacterial DNA recombination protein NHG98_05990 PF02666 Phosphatidylserine decarboxylase NHG98_05995 PF01066 CDP-alcohol phosphatidyltransferase NHG98_06000 PF01235 Sodium:alanine symporter family NHG98_06005 PF01235 Sodium:alanine symporter family NHG98_06015 PF02660 Glycerol-3-phosphate acyltransferase NHG98_06025 PF01545 Cation efflux family NHG98_06060 PF17762 HTH domain found in ParB protein NHG98_06060 PF02195 ParB-like nuclease domain NHG98_06065 PF13614 AAA domain NHG98_06070 PF00072 Response regulator receiver domain NHG98_06070 PF08448 PAS fold NHG98_06070 PF13188 PAS domain NHG98_06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NHG98_06070 PF00512 His Kinase A (phospho-acceptor) domain NHG98_06075 PF01218 Coproporphyrinogen III oxidase NHG98_06085 PF04452 RNA methyltransferase NHG98_06100 PF08442 ATP-grasp domain NHG98_06100 PF00549 CoA-ligase NHG98_06105 PF02629 CoA binding domain NHG98_06105 PF00549 CoA-ligase NHG98_06115 PF01678 Diaminopimelate epimerase NHG98_06120 PF00881 Nitroreductase family NHG98_06125 PF02632 BioY family NHG98_06140 PF00202 Aminotransferase class-III NHG98_06145 PF01595 Cyclin M transmembrane N-terminal domain NHG98_06145 PF03471 Transporter associated domain NHG98_06145 PF00571 CBS domain NHG98_06150 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) NHG98_06155 PF02441 Flavoprotein NHG98_06160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NHG98_06160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NHG98_06180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NHG98_06180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NHG98_06180 PF02142 MGS-like domain NHG98_06195 PF01040 UbiA prenyltransferase family NHG98_06200 PF02033 Ribosome-binding factor A NHG98_06205 PF00009 Elongation factor Tu GTP binding domain NHG98_06205 PF11987 Translation-initiation factor 2 NHG98_06205 PF04760 Translation initiation factor IF-2, N-terminal region NHG98_06210 PF08529 NusA N-terminal domain NHG98_06210 PF13184 NusA-like KH domain NHG98_06210 PF00575 S1 RNA binding domain NHG98_06215 PF00873 AcrB/AcrD/AcrF family NHG98_06225 PF00120 Glutamine synthetase, catalytic domain NHG98_06250 PF03796 DnaB-like helicase C terminal domain NHG98_06250 PF00772 DnaB-like helicase N terminal domain NHG98_06340 PF02021 Uncharacterised protein family UPF0102