locus-tag class description CAI20_00030 PF08245 Mur ligase middle domain CAI20_00085 PF02142 MGS-like domain CAI20_00085 PF01808 AICARFT/IMPCHase bienzyme CAI20_00090 PF10576 Iron-sulfur binding domain of endonuclease III CAI20_00090 PF00633 Helix-hairpin-helix motif CAI20_00090 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI20_00100 PF18324 Hypothetical protein TT1725 CAI20_00100 PF00180 Isocitrate/isopropylmalate dehydrogenase CAI20_00110 PF02843 Phosphoribosylglycinamide synthetase, C domain CAI20_00110 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CAI20_00110 PF02844 Phosphoribosylglycinamide synthetase, N domain CAI20_00115 PF02403 Seryl-tRNA synthetase N-terminal domain CAI20_00115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI20_00125 PF01207 Dihydrouridine synthase (Dus) CAI20_00130 PF04565 RNA polymerase Rpb2, domain 3 CAI20_00130 PF00562 RNA polymerase Rpb2, domain 6 CAI20_00130 PF00623 RNA polymerase Rpb1, domain 2 CAI20_00130 PF04983 RNA polymerase Rpb1, domain 3 CAI20_00130 PF10385 RNA polymerase beta subunit external 1 domain CAI20_00130 PF04561 RNA polymerase Rpb2, domain 2 CAI20_00130 PF04563 RNA polymerase beta subunit CAI20_00130 PF04998 RNA polymerase Rpb1, domain 5 CAI20_00130 PF05000 RNA polymerase Rpb1, domain 4 CAI20_00130 PF04560 RNA polymerase Rpb2, domain 7 CAI20_00130 PF04997 RNA polymerase Rpb1, domain 1 CAI20_00140 PF00466 Ribosomal protein L10 CAI20_00145 PF00687 Ribosomal protein L1p/L10e family CAI20_00150 PF03946 Ribosomal protein L11, N-terminal domain CAI20_00150 PF00298 Ribosomal protein L11, RNA binding domain CAI20_00155 PF02357 Transcription termination factor nusG CAI20_00155 PF00467 KOW motif CAI20_00170 PF00009 Elongation factor Tu GTP binding domain CAI20_00170 PF03143 Elongation factor Tu C-terminal domain CAI20_00170 PF03144 Elongation factor Tu domain 2 CAI20_00175 PF00679 Elongation factor G C-terminus CAI20_00175 PF14492 Elongation Factor G, domain II CAI20_00175 PF03764 Elongation factor G, domain IV CAI20_00175 PF03144 Elongation factor Tu domain 2 CAI20_00175 PF00009 Elongation factor Tu GTP binding domain CAI20_00180 PF00177 Ribosomal protein S7p/S5e CAI20_00185 PF00164 Ribosomal protein S12/S23 CAI20_00190 PF02390 Putative methyltransferase CAI20_00190 PF05175 Methyltransferase small domain CAI20_00190 PF17827 PrmC N-terminal domain CAI20_00205 PF04972 BON domain CAI20_00215 PF05698 Bacterial trigger factor protein (TF) C-terminus CAI20_00215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI20_00215 PF05697 Bacterial trigger factor protein (TF) CAI20_00220 PF00574 Clp protease CAI20_00225 PF10431 C-terminal, D2-small domain, of ClpB protein CAI20_00225 PF06689 ClpX C4-type zinc finger CAI20_00225 PF07724 AAA domain (Cdc48 subfamily) CAI20_00230 PF02190 ATP-dependent protease La (LON) substrate-binding domain CAI20_00230 PF05362 Lon protease (S16) C-terminal proteolytic domain CAI20_00230 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_00235 PF03717 Penicillin-binding Protein dimerisation domain CAI20_00235 PF00905 Penicillin binding protein transpeptidase domain CAI20_00240 PF01522 Polysaccharide deacetylase CAI20_00245 PF01078 Magnesium chelatase, subunit ChlI CAI20_00245 PF13335 Magnesium chelatase, subunit ChlI C-terminal CAI20_00255 PF12327 FtsZ family, C-terminal domain CAI20_00255 PF00091 Tubulin/FtsZ family, GTPase domain CAI20_00265 PF02130 Uncharacterized protein family UPF0054 CAI20_00270 PF13085 2Fe-2S iron-sulfur cluster binding domain CAI20_00285 PF04608 Phosphatidylglycerophosphatase A CAI20_00290 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CAI20_00290 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CAI20_00295 PF00486 Transcriptional regulatory protein, C terminal CAI20_00295 PF00072 Response regulator receiver domain CAI20_00315 PF01702 Queuine tRNA-ribosyltransferase CAI20_00325 PF00675 Insulinase (Peptidase family M16) CAI20_00325 PF05193 Peptidase M16 inactive domain CAI20_00330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CAI20_00330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CAI20_00350 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI20_00355 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI20_00360 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI20_00365 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI20_00370 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CAI20_00380 PF01921 tRNA synthetases class I (K) CAI20_00390 PF01728 FtsJ-like methyltransferase CAI20_00395 PF10691 Protein of unknown function (DUF2497) CAI20_00400 PF02321 Outer membrane efflux protein CAI20_00405 PF00572 Ribosomal protein L13 CAI20_00410 PF00380 Ribosomal protein S9/S16 CAI20_00420 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CAI20_00430 PF00011 Hsp20/alpha crystallin family CAI20_00435 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI20_00445 PF02785 Biotin carboxylase C-terminal domain CAI20_00445 PF00289 Biotin carboxylase, N-terminal domain CAI20_00445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI20_00450 PF02628 Cytochrome oxidase assembly protein CAI20_00470 PF00137 ATP synthase subunit C CAI20_00475 PF00119 ATP synthase A chain CAI20_00485 PF03483 B3/4 domain CAI20_00485 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CAI20_00485 PF01588 Putative tRNA binding domain CAI20_00485 PF03147 Ferredoxin-fold anticodon binding domain CAI20_00485 PF03484 tRNA synthetase B5 domain CAI20_00495 PF00133 tRNA synthetases class I (I, L, M and V) CAI20_00495 PF08264 Anticodon-binding domain of tRNA CAI20_00505 PF00919 Uncharacterized protein family UPF0004 CAI20_00505 PF01938 TRAM domain CAI20_00505 PF04055 Radical SAM superfamily CAI20_00510 PF01368 DHH family CAI20_00510 PF17768 RecJ OB domain CAI20_00510 PF02272 DHHA1 domain CAI20_00515 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CAI20_00525 PF03060 Nitronate monooxygenase CAI20_00540 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CAI20_00550 PF12796 Ankyrin repeats (3 copies) CAI20_00570 PF00557 Metallopeptidase family M24 CAI20_00570 PF01321 Creatinase/Prolidase N-terminal domain CAI20_00575 PF13932 GidA associated domain CAI20_00575 PF01134 Glucose inhibited division protein A CAI20_00590 PF03023 Lipid II flippase MurJ CAI20_00615 PF04860 Phage portal protein CAI20_00620 PF03099 Biotin/lipoate A/B protein ligase family CAI20_00625 PF17676 LD-carboxypeptidase C-terminal domain CAI20_00625 PF02016 LD-carboxypeptidase N-terminal domain CAI20_00650 PF10397 Adenylosuccinate lyase C-terminus CAI20_00650 PF00206 Lyase CAI20_00655 PF03948 Ribosomal protein L9, C-terminal domain CAI20_00655 PF01281 Ribosomal protein L9, N-terminal domain CAI20_00660 PF01084 Ribosomal protein S18 CAI20_00665 PF01250 Ribosomal protein S6 CAI20_00670 PF02811 PHP domain CAI20_00670 PF14579 Helix-hairpin-helix motif CAI20_00670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CAI20_00670 PF07733 Bacterial DNA polymerase III alpha NTPase domain CAI20_00685 PF00551 Formyl transferase CAI20_00685 PF02911 Formyl transferase, C-terminal domain CAI20_00690 PF00453 Ribosomal protein L20 CAI20_00695 PF01632 Ribosomal protein L35 CAI20_00715 PF01411 tRNA synthetases class II (A) CAI20_00715 PF02272 DHHA1 domain CAI20_00715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI20_00730 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CAI20_00730 PF01676 Metalloenzyme superfamily CAI20_00735 PF00698 Acyl transferase domain CAI20_00740 PF01197 Ribosomal protein L31 CAI20_00745 PF01513 ATP-NAD kinase CAI20_00755 PF13416 Bacterial extracellular solute-binding protein CAI20_00760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CAI20_00760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CAI20_00780 PF00625 Guanylate kinase CAI20_00790 PF00890 FAD binding domain CAI20_00790 PF02910 Fumarate reductase flavoprotein C-term CAI20_00800 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CAI20_00800 PF14602 Hexapeptide repeat of succinyl-transferase CAI20_00800 PF00132 Bacterial transferase hexapeptide (six repeats) CAI20_00830 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_00830 PF17862 AAA+ lid domain CAI20_00830 PF06480 FtsH Extracellular CAI20_00830 PF01434 Peptidase family M41 CAI20_00845 PF07687 Peptidase dimerisation domain CAI20_00845 PF01546 Peptidase family M20/M25/M40 CAI20_00850 PF13685 Iron-containing alcohol dehydrogenase CAI20_00865 PF00186 Dihydrofolate reductase CAI20_00875 PF02152 Dihydroneopterin aldolase CAI20_00880 PF03070 TENA/THI-4/PQQC family CAI20_00905 PF00085 Thioredoxin CAI20_00925 PF01926 50S ribosome-binding GTPase CAI20_00925 PF07650 KH domain CAI20_00980 PF00528 Binding-protein-dependent transport system inner membrane component CAI20_00985 PF04379 ApaG domain CAI20_00990 PF02222 ATP-grasp domain CAI20_00990 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CAI20_00995 PF01118 Semialdehyde dehydrogenase, NAD binding domain CAI20_00995 PF02774 Semialdehyde dehydrogenase, dimerisation domain CAI20_01005 PF00324 Amino acid permease CAI20_01010 PF13520 Amino acid permease CAI20_01020 PF01975 Survival protein SurE CAI20_01025 PF13393 Histidyl-tRNA synthetase CAI20_01025 PF03129 Anticodon binding domain CAI20_01035 PF00226 DnaJ domain CAI20_01035 PF01556 DnaJ C terminal domain CAI20_01035 PF00684 DnaJ central domain CAI20_01060 PF00032 Cytochrome b(C-terminal)/b6/petD CAI20_01060 PF00033 Cytochrome b/b6/petB CAI20_01065 PF02167 Cytochrome C1 family CAI20_01065 PF00033 Cytochrome b/b6/petB CAI20_01065 PF00032 Cytochrome b(C-terminal)/b6/petD CAI20_01070 PF12344 Ultra-violet resistance protein B CAI20_01070 PF17757 UvrB interaction domain CAI20_01070 PF00271 Helicase conserved C-terminal domain CAI20_01070 PF02151 UvrB/uvrC motif CAI20_01070 PF04851 Type III restriction enzyme, res subunit CAI20_01080 PF00216 Bacterial DNA-binding protein CAI20_01085 PF13411 MerR HTH family regulatory protein CAI20_01090 PF01551 Peptidase family M23 CAI20_01095 PF08264 Anticodon-binding domain of tRNA CAI20_01095 PF09334 tRNA synthetases class I (M) CAI20_01095 PF13603 Leucyl-tRNA synthetase, Domain 2 CAI20_01095 PF00133 tRNA synthetases class I (I, L, M and V) CAI20_01110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CAI20_01110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CAI20_01115 PF02441 Flavoprotein CAI20_01120 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CAI20_01125 PF03471 Transporter associated domain CAI20_01125 PF00571 CBS domain CAI20_01125 PF01595 Cyclin M transmembrane N-terminal domain CAI20_01130 PF00202 Aminotransferase class-III CAI20_01135 PF00334 Nucleoside diphosphate kinase CAI20_01145 PF00762 Ferrochelatase CAI20_01160 PF00227 Proteasome subunit CAI20_01165 PF10431 C-terminal, D2-small domain, of ClpB protein CAI20_01165 PF07724 AAA domain (Cdc48 subfamily) CAI20_01165 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_01180 PF00348 Polyprenyl synthetase CAI20_01185 PF00550 Phosphopantetheine attachment site CAI20_01190 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI20_01190 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI20_01195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CAI20_01200 PF02511 Thymidylate synthase complementing protein CAI20_01220 PF00271 Helicase conserved C-terminal domain CAI20_01220 PF18074 Primosomal protein N C-terminal domain CAI20_01220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CAI20_01220 PF00270 DEAD/DEAH box helicase CAI20_01220 PF17764 3′ DNA-binding domain (3′BD) CAI20_01245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI20_01245 PF01348 Type II intron maturase CAI20_01250 PF13662 Toprim domain CAI20_01250 PF02132 RecR protein CAI20_01265 PF00183 Hsp90 protein CAI20_01280 PF00155 Aminotransferase class I and II CAI20_01290 PF08207 Elongation factor P (EF-P) KOW-like domain CAI20_01290 PF09285 Elongation factor P, C-terminal CAI20_01290 PF01132 Elongation factor P (EF-P) OB domain CAI20_01295 PF01782 RimM N-terminal domain CAI20_01295 PF05239 PRC-barrel domain CAI20_01305 PF00202 Aminotransferase class-III CAI20_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI20_01310 PF00989 PAS fold CAI20_01310 PF00512 His Kinase A (phospho-acceptor) domain CAI20_01310 PF13426 PAS domain CAI20_01310 PF13188 PAS domain CAI20_01320 PF00814 Glycoprotease family CAI20_01330 PF00005 ABC transporter CAI20_01330 PF00664 ABC transporter transmembrane region CAI20_01340 PF00364 Biotin-requiring enzyme CAI20_01340 PF02817 e3 binding domain CAI20_01340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI20_01355 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_01355 PF17862 AAA+ lid domain CAI20_01355 PF06480 FtsH Extracellular CAI20_01355 PF01434 Peptidase family M41 CAI20_01360 PF01171 PP-loop family CAI20_01365 PF00691 OmpA family CAI20_01390 PF00719 Inorganic pyrophosphatase CAI20_01400 PF09312 SurA N-terminal domain CAI20_01405 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_01435 PF02401 LytB protein CAI20_01460 PF00436 Single-strand binding protein family CAI20_01465 PF00701 Dihydrodipicolinate synthetase family CAI20_01470 PF08240 Alcohol dehydrogenase GroES-like domain CAI20_01470 PF00107 Zinc-binding dehydrogenase CAI20_01480 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CAI20_01485 PF01027 Inhibitor of apoptosis-promoting Bax1 CAI20_01490 PF00266 Aminotransferase class-V CAI20_01495 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CAI20_01505 PF00005 ABC transporter CAI20_01510 PF01521 Iron-sulphur cluster biosynthesis CAI20_01515 PF13286 Phosphohydrolase-associated domain CAI20_01515 PF01966 HD domain CAI20_01520 PF01872 RibD C-terminal domain CAI20_01520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CAI20_01530 PF16198 tRNA pseudouridylate synthase B C-terminal domain CAI20_01530 PF01509 TruB family pseudouridylate synthase (N terminal domain) CAI20_01535 PF00312 Ribosomal protein S15 CAI20_01545 PF00834 Ribulose-phosphate 3 epimerase family CAI20_01560 PF00162 Phosphoglycerate kinase CAI20_01565 PF00464 Serine hydroxymethyltransferase CAI20_01580 PF00893 Small Multidrug Resistance protein CAI20_01590 PF01208 Uroporphyrinogen decarboxylase (URO-D) CAI20_01595 PF00571 CBS domain CAI20_01595 PF03471 Transporter associated domain CAI20_01625 PF01098 Cell cycle protein CAI20_01630 PF00266 Aminotransferase class-V CAI20_01635 PF12796 Ankyrin repeats (3 copies) CAI20_01655 PF00892 EamA-like transporter family CAI20_01660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI20_01660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI20_01660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI20_01670 PF01212 Beta-eliminating lyase CAI20_01675 PF01212 Beta-eliminating lyase CAI20_01680 PF00005 ABC transporter CAI20_01680 PF00664 ABC transporter transmembrane region CAI20_01700 PF01370 NAD dependent epimerase/dehydratase family CAI20_01705 PF00132 Bacterial transferase hexapeptide (six repeats) CAI20_01705 PF12804 MobA-like NTP transferase domain CAI20_01705 PF14602 Hexapeptide repeat of succinyl-transferase CAI20_01715 PF01119 DNA mismatch repair protein, C-terminal domain CAI20_01715 PF08676 MutL C terminal dimerisation domain CAI20_01745 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI20_01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_01775 PF10396 GTP-binding protein TrmE N-terminus CAI20_01775 PF12631 MnmE helical domain CAI20_01775 PF01926 50S ribosome-binding GTPase CAI20_01780 PF12838 4Fe-4S dicluster domain CAI20_01790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI20_01790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI20_01790 PF03129 Anticodon binding domain CAI20_01795 PF00707 Translation initiation factor IF-3, C-terminal domain CAI20_01795 PF05198 Translation initiation factor IF-3, N-terminal domain CAI20_01800 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CAI20_01800 PF10531 SLBB domain CAI20_01800 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CAI20_01830 PF03100 CcmE CAI20_01835 PF02237 Biotin protein ligase C terminal domain CAI20_01835 PF03099 Biotin/lipoate A/B protein ligase family CAI20_01835 PF08279 HTH domain CAI20_01845 PF00361 Proton-conducting membrane transporter CAI20_01850 PF00361 Proton-conducting membrane transporter CAI20_01855 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI20_01855 PF00361 Proton-conducting membrane transporter CAI20_01860 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI20_01865 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CAI20_01875 PF13361 UvrD-like helicase C-terminal domain CAI20_01875 PF00580 UvrD/REP helicase N-terminal domain CAI20_01885 PF00034 Cytochrome c CAI20_01890 PF07499 RuvA, C-terminal domain CAI20_01890 PF01330 RuvA N terminal domain CAI20_01895 PF05496 Holliday junction DNA helicase RuvB P-loop domain CAI20_01895 PF05491 RuvB C-terminal winged helix domain CAI20_01895 PF17864 RuvB AAA lid domain CAI20_01915 PF00285 Citrate synthase, C-terminal domain CAI20_01920 PF01649 Ribosomal protein S20 CAI20_01930 PF00589 Phage integrase family CAI20_01930 PF02899 Phage integrase, N-terminal SAM-like domain CAI20_01940 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI20_01940 PF01348 Type II intron maturase CAI20_01955 PF01594 AI-2E family transporter CAI20_01965 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CAI20_01965 PF02542 YgbB family CAI20_01970 PF02195 ParB-like nuclease domain CAI20_01970 PF17762 HTH domain found in ParB protein CAI20_01975 PF13614 AAA domain CAI20_01980 PF00072 Response regulator receiver domain CAI20_01980 PF13188 PAS domain CAI20_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI20_01980 PF08448 PAS fold CAI20_01980 PF00512 His Kinase A (phospho-acceptor) domain CAI20_01985 PF01218 Coproporphyrinogen III oxidase CAI20_02005 PF04452 RNA methyltransferase CAI20_02020 PF08442 ATP-grasp domain CAI20_02020 PF00549 CoA-ligase CAI20_02025 PF02629 CoA binding domain CAI20_02025 PF00549 CoA-ligase CAI20_02030 PF01678 Diaminopimelate epimerase CAI20_02040 PF00881 Nitroreductase family CAI20_02045 PF02632 BioY family CAI20_02065 PF03989 DNA gyrase C-terminal domain, beta-propeller CAI20_02065 PF00521 DNA gyrase/topoisomerase IV, subunit A CAI20_02070 PF00355 Rieske [2Fe-2S] domain CAI20_02070 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CAI20_02075 PF01523 Putative modulator of DNA gyrase CAI20_02095 PF08245 Mur ligase middle domain CAI20_02095 PF02875 Mur ligase family, glutamate ligase domain CAI20_02110 PF03364 Polyketide cyclase / dehydrase and lipid transport CAI20_02115 PF13462 Thioredoxin CAI20_02150 PF12169 DNA polymerase III subunits gamma and tau domain III CAI20_02155 PF02575 YbaB/EbfC DNA-binding family CAI20_02160 PF13505 Outer membrane protein beta-barrel domain CAI20_02165 PF04545 Sigma-70, region 4 CAI20_02165 PF04542 Sigma-70 region 2 CAI20_02165 PF00140 Sigma-70 factor, region 1.2 CAI20_02175 PF00712 DNA polymerase III beta subunit, N-terminal domain CAI20_02175 PF02768 DNA polymerase III beta subunit, C-terminal domain CAI20_02175 PF02767 DNA polymerase III beta subunit, central domain CAI20_02180 PF01416 tRNA pseudouridine synthase CAI20_02185 PF00154 recA bacterial DNA recombination protein CAI20_02190 PF01195 Peptidyl-tRNA hydrolase CAI20_02195 PF14693 Ribosomal protein TL5, C-terminal domain CAI20_02195 PF01386 Ribosomal L25p family CAI20_02215 PF01795 MraW methylase family CAI20_02220 PF00083 Sugar (and other) transporter CAI20_02225 PF00557 Metallopeptidase family M24 CAI20_02230 PF02491 SHS2 domain inserted in FTSA CAI20_02235 PF01327 Polypeptide deformylase CAI20_02240 PF03167 Uracil DNA glycosylase superfamily CAI20_02255 PF00156 Phosphoribosyl transferase domain CAI20_02255 PF13537 Glutamine amidotransferase domain CAI20_02270 PF03631 Virulence factor BrkB CAI20_02280 PF02142 MGS-like domain CAI20_02280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CAI20_02280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI20_02290 PF01219 Prokaryotic diacylglycerol kinase CAI20_02295 PF00849 RNA pseudouridylate synthase CAI20_02305 PF03772 Competence protein CAI20_02305 PF00753 Metallo-beta-lactamase superfamily CAI20_02315 PF02223 Thymidylate kinase CAI20_02325 PF02254 TrkA-N domain CAI20_02325 PF00999 Sodium/hydrogen exchanger family CAI20_02330 PF00696 Amino acid kinase family CAI20_02330 PF01842 ACT domain CAI20_02330 PF13840 ACT domain CAI20_02335 PF02463 RecF/RecN/SMC N terminal domain CAI20_02340 PF00578 AhpC/TSA family CAI20_02345 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CAI20_02345 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CAI20_02350 PF03033 Glycosyltransferase family 28 N-terminal domain CAI20_02350 PF04101 Glycosyltransferase family 28 C-terminal domain CAI20_02360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI20_02360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_02385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CAI20_02385 PF01926 50S ribosome-binding GTPase CAI20_02395 PF01039 Carboxyl transferase domain CAI20_02425 PF06827 Zinc finger found in FPG and IleRS CAI20_02425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CAI20_02425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CAI20_02430 PF01243 Pyridoxamine 5'-phosphate oxidase CAI20_02430 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CAI20_02440 PF00528 Binding-protein-dependent transport system inner membrane component CAI20_02445 PF01245 Ribosomal protein L19 CAI20_02450 PF01746 tRNA (Guanine-1)-methyltransferase CAI20_02455 PF01259 SAICAR synthetase CAI20_02460 PF00586 AIR synthase related protein, N-terminal domain CAI20_02460 PF02769 AIR synthase related protein, C-terminal domain CAI20_02480 PF01351 Ribonuclease HII CAI20_02485 PF00953 Glycosyl transferase family 4 CAI20_02495 PF02245 Methylpurine-DNA glycosylase (MPG) CAI20_02500 PF10609 NUBPL iron-transfer P-loop NTPase CAI20_02520 PF00579 tRNA synthetases class I (W and Y) CAI20_02535 PF00293 NUDIX domain CAI20_02540 PF01026 TatD related DNase CAI20_02545 PF00056 lactate/malate dehydrogenase, NAD binding domain CAI20_02545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CAI20_02550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CAI20_02555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CAI20_02560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CAI20_02565 PF01230 HIT domain CAI20_02580 PF01225 Mur ligase family, catalytic domain CAI20_02580 PF08245 Mur ligase middle domain CAI20_02580 PF02875 Mur ligase family, glutamate ligase domain CAI20_02585 PF08338 Domain of unknown function (DUF1731) CAI20_02585 PF01370 NAD dependent epimerase/dehydratase family CAI20_02595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI20_02595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI20_02600 PF02504 Fatty acid synthesis protein CAI20_02605 PF01783 Ribosomal L32p protein family CAI20_02610 PF02405 Permease MlaE CAI20_02615 PF08402 TOBE domain CAI20_02615 PF00005 ABC transporter CAI20_02620 PF02881 SRP54-type protein, helical bundle domain CAI20_02620 PF00448 SRP54-type protein, GTPase domain CAI20_02620 PF02978 Signal peptide binding domain CAI20_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_02635 PF07977 FabA-like domain CAI20_02645 PF01103 Surface antigen CAI20_02645 PF07244 Surface antigen variable number repeat CAI20_02650 PF17820 PDZ domain CAI20_02650 PF02163 Peptidase family M50 CAI20_02665 PF00216 Bacterial DNA-binding protein CAI20_02670 PF00575 S1 RNA binding domain CAI20_02675 PF02390 Putative methyltransferase CAI20_02710 PF13180 PDZ domain CAI20_02715 PF01145 SPFH domain / Band 7 family CAI20_02720 PF01145 SPFH domain / Band 7 family CAI20_02730 PF08676 MutL C terminal dimerisation domain CAI20_02730 PF01119 DNA mismatch repair protein, C-terminal domain CAI20_02735 PF00731 AIR carboxylase CAI20_02745 PF01192 RNA polymerase Rpb6 CAI20_02755 PF03334 Na+/H+ antiporter subunit CAI20_02760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI20_02760 PF00361 Proton-conducting membrane transporter CAI20_02760 PF13244 Domain of unknown function (DUF4040) CAI20_02770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI20_02775 PF04542 Sigma-70 region 2 CAI20_02775 PF03979 Sigma-70 factor, region 1.1 CAI20_02775 PF04546 Sigma-70, non-essential region CAI20_02775 PF04539 Sigma-70 region 3 CAI20_02775 PF04545 Sigma-70, region 4 CAI20_02775 PF00140 Sigma-70 factor, region 1.2 CAI20_02805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI20_02810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI20_02820 PF00483 Nucleotidyl transferase CAI20_02820 PF01050 Mannose-6-phosphate isomerase CAI20_02825 PF12704 MacB-like periplasmic core domain CAI20_02825 PF02687 FtsX-like permease family CAI20_02840 PF00231 ATP synthase CAI20_02845 PF01523 Putative modulator of DNA gyrase CAI20_02850 PF00313 'Cold-shock' DNA-binding domain CAI20_02855 PF00270 DEAD/DEAH box helicase CAI20_02855 PF00271 Helicase conserved C-terminal domain CAI20_02860 PF07724 AAA domain (Cdc48 subfamily) CAI20_02860 PF17871 AAA lid domain CAI20_02860 PF02861 Clp amino terminal domain, pathogenicity island component CAI20_02860 PF10431 C-terminal, D2-small domain, of ClpB protein CAI20_02860 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_02870 PF01791 DeoC/LacD family aldolase CAI20_02885 PF01180 Dihydroorotate dehydrogenase CAI20_02890 PF14622 Ribonuclease-III-like CAI20_02890 PF00035 Double-stranded RNA binding motif CAI20_02895 PF02630 SCO1/SenC CAI20_02900 PF00929 Exonuclease CAI20_02910 PF02556 Preprotein translocase subunit SecB CAI20_02915 PF00694 Aconitase C-terminal domain CAI20_02915 PF00330 Aconitase family (aconitate hydratase) CAI20_02920 PF01619 Proline dehydrogenase CAI20_02920 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI20_02920 PF14850 DNA-binding domain of Proline dehydrogenase CAI20_02920 PF00171 Aldehyde dehydrogenase family CAI20_02930 PF02789 Cytosol aminopeptidase family, N-terminal domain CAI20_02930 PF00883 Cytosol aminopeptidase family, catalytic domain CAI20_02940 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CAI20_02940 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CAI20_02940 PF00384 Molybdopterin oxidoreductase CAI20_02950 PF00146 NADH dehydrogenase CAI20_02955 PF00490 Delta-aminolevulinic acid dehydratase CAI20_02980 PF01367 5'-3' exonuclease, C-terminal SAM fold CAI20_02980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CAI20_02980 PF00476 DNA polymerase family A CAI20_02985 PF01425 Amidase CAI20_02990 PF00204 DNA gyrase B CAI20_02990 PF00986 DNA gyrase B subunit, carboxyl terminus CAI20_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI20_02990 PF01751 Toprim domain CAI20_03005 PF02666 Phosphatidylserine decarboxylase CAI20_03010 PF01066 CDP-alcohol phosphatidyltransferase CAI20_03030 PF01235 Sodium:alanine symporter family CAI20_03035 PF02660 Glycerol-3-phosphate acyltransferase CAI20_03045 PF01545 Cation efflux family CAI20_03075 PF00588 SpoU rRNA Methylase family CAI20_03075 PF08032 RNA 2'-O ribose methyltransferase substrate binding CAI20_03085 PF01541 GIY-YIG catalytic domain CAI20_03085 PF02151 UvrB/uvrC motif CAI20_03085 PF08459 UvrC Helix-hairpin-helix N-terminal CAI20_03090 PF05746 DALR anticodon binding domain CAI20_03090 PF02092 Glycyl-tRNA synthetase beta subunit CAI20_03095 PF02091 Glycyl-tRNA synthetase alpha subunit CAI20_03145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI20_03145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI20_03145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI20_03145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI20_03155 PF00677 Lumazine binding domain CAI20_03165 PF01409 tRNA synthetases class II core domain (F) CAI20_03165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CAI20_03170 PF12804 MobA-like NTP transferase domain CAI20_03170 PF00132 Bacterial transferase hexapeptide (six repeats) CAI20_03170 PF14602 Hexapeptide repeat of succinyl-transferase CAI20_03185 PF00829 Ribosomal prokaryotic L21 protein CAI20_03190 PF01016 Ribosomal L27 protein CAI20_03200 PF02773 S-adenosylmethionine synthetase, C-terminal domain CAI20_03200 PF02772 S-adenosylmethionine synthetase, central domain CAI20_03200 PF00438 S-adenosylmethionine synthetase, N-terminal domain CAI20_03205 PF03070 TENA/THI-4/PQQC family CAI20_03215 PF00510 Cytochrome c oxidase subunit III CAI20_03220 PF02075 Crossover junction endodeoxyribonuclease RuvC CAI20_03225 PF03652 Holliday junction resolvase CAI20_03230 PF02867 Ribonucleotide reductase, barrel domain CAI20_03230 PF00317 Ribonucleotide reductase, all-alpha domain CAI20_03230 PF03477 ATP cone domain CAI20_03260 PF00468 Ribosomal protein L34 CAI20_03265 PF00528 Binding-protein-dependent transport system inner membrane component CAI20_03270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI20_03270 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI20_03275 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CAI20_03285 PF00923 Transaldolase/Fructose-6-phosphate aldolase CAI20_03300 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CAI20_03300 PF00117 Glutamine amidotransferase class-I CAI20_03315 PF03143 Elongation factor Tu C-terminal domain CAI20_03315 PF00009 Elongation factor Tu GTP binding domain CAI20_03315 PF03144 Elongation factor Tu domain 2 CAI20_03320 PF00338 Ribosomal protein S10p/S20e CAI20_03325 PF00297 Ribosomal protein L3 CAI20_03330 PF00573 Ribosomal protein L4/L1 family CAI20_03335 PF00276 Ribosomal protein L23 CAI20_03340 PF03947 Ribosomal Proteins L2, C-terminal domain CAI20_03340 PF00181 Ribosomal Proteins L2, RNA binding domain CAI20_03345 PF00203 Ribosomal protein S19 CAI20_03350 PF00237 Ribosomal protein L22p/L17e CAI20_03355 PF00189 Ribosomal protein S3, C-terminal domain CAI20_03355 PF07650 KH domain CAI20_03360 PF00252 Ribosomal protein L16p/L10e CAI20_03365 PF00831 Ribosomal L29 protein CAI20_03370 PF00366 Ribosomal protein S17 CAI20_03375 PF00238 Ribosomal protein L14p/L23e CAI20_03380 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CAI20_03385 PF00281 Ribosomal protein L5 CAI20_03385 PF00673 ribosomal L5P family C-terminus CAI20_03390 PF00253 Ribosomal protein S14p/S29e CAI20_03395 PF00410 Ribosomal protein S8 CAI20_03400 PF00347 Ribosomal protein L6 CAI20_03405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CAI20_03410 PF00333 Ribosomal protein S5, N-terminal domain CAI20_03410 PF03719 Ribosomal protein S5, C-terminal domain CAI20_03415 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CAI20_03420 PF00344 SecY translocase CAI20_03430 PF00416 Ribosomal protein S13/S18 CAI20_03435 PF00411 Ribosomal protein S11 CAI20_03440 PF01000 RNA polymerase Rpb3/RpoA insert domain CAI20_03440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CAI20_03440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CAI20_03445 PF01196 Ribosomal protein L17 CAI20_03450 PF02021 Uncharacterised protein family UPF0102 CAI20_03455 PF00213 ATP synthase delta (OSCP) subunit CAI20_03460 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI20_03460 PF00306 ATP synthase alpha/beta chain, C terminal domain CAI20_03460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI20_03465 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI20_03465 PF03449 Transcription elongation factor, N-terminal CAI20_03470 PF00925 GTP cyclohydrolase II CAI20_03470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CAI20_03500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CAI20_03500 PF02896 PEP-utilising enzyme, TIM barrel domain CAI20_03500 PF00391 PEP-utilising enzyme, mobile domain CAI20_03515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI20_03515 PF00529 HlyD membrane-fusion protein of T1SS CAI20_03520 PF00462 Glutaredoxin CAI20_03530 PF03949 Malic enzyme, NAD binding domain CAI20_03530 PF00390 Malic enzyme, N-terminal domain CAI20_03530 PF01515 Phosphate acetyl/butaryl transferase CAI20_03535 PF01066 CDP-alcohol phosphatidyltransferase CAI20_03550 PF01709 Transcriptional regulator CAI20_03555 PF01476 LysM domain CAI20_03555 PF08525 Opacity-associated protein A N-terminal motif CAI20_03555 PF01551 Peptidase family M23 CAI20_03585 PF07690 Major Facilitator Superfamily CAI20_03590 PF01209 ubiE/COQ5 methyltransferase family CAI20_03595 PF00664 ABC transporter transmembrane region CAI20_03595 PF00005 ABC transporter CAI20_03610 PF03485 Arginyl tRNA synthetase N terminal domain CAI20_03610 PF05746 DALR anticodon binding domain CAI20_03610 PF00750 tRNA synthetases class I (R) CAI20_03615 PF00005 ABC transporter CAI20_03630 PF14437 MafB19-like deaminase CAI20_03640 PF06418 CTP synthase N-terminus CAI20_03640 PF00117 Glutamine amidotransferase class-I CAI20_03665 PF01380 SIS domain CAI20_03670 PF02699 Preprotein translocase subunit CAI20_03680 PF00318 Ribosomal protein S2 CAI20_03685 PF00889 Elongation factor TS CAI20_03690 PF00696 Amino acid kinase family CAI20_03695 PF01765 Ribosome recycling factor CAI20_03710 PF02386 Cation transport protein CAI20_03715 PF00692 dUTPase CAI20_03735 PF00925 GTP cyclohydrolase II CAI20_03740 PF04335 VirB8 protein CAI20_03755 PF00437 Type II/IV secretion system protein CAI20_03760 PF02534 Type IV secretory system Conjugative DNA transfer CAI20_03770 PF13368 Topoisomerase C-terminal repeat CAI20_03770 PF01396 Topoisomerase DNA binding C4 zinc finger CAI20_03770 PF01751 Toprim domain CAI20_03770 PF01131 DNA topoisomerase CAI20_03775 PF07690 Major Facilitator Superfamily CAI20_03775 PF00083 Sugar (and other) transporter CAI20_03780 PF18073 Rubredoxin metal binding domain CAI20_03785 PF02881 SRP54-type protein, helical bundle domain CAI20_03785 PF00448 SRP54-type protein, GTPase domain CAI20_03790 PF01592 NifU-like N terminal domain CAI20_03795 PF01521 Iron-sulphur cluster biosynthesis CAI20_03800 PF07743 HSCB C-terminal oligomerisation domain CAI20_03805 PF00012 Hsp70 protein CAI20_03810 PF10502 Signal peptidase, peptidase S26 CAI20_03820 PF02779 Transketolase, pyrimidine binding domain CAI20_03820 PF00364 Biotin-requiring enzyme CAI20_03820 PF02780 Transketolase, C-terminal domain CAI20_03830 PF17755 UvrA DNA-binding domain CAI20_03830 PF17760 UvrA interaction domain CAI20_03850 PF17862 AAA+ lid domain CAI20_03850 PF01434 Peptidase family M41 CAI20_03850 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_03890 PF00929 Exonuclease CAI20_03895 PF04055 Radical SAM superfamily CAI20_03895 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CAI20_03900 PF00830 Ribosomal L28 family CAI20_03910 PF04384 Iron-sulphur cluster assembly CAI20_03920 PF00163 Ribosomal protein S4/S9 N-terminal domain CAI20_03920 PF01479 S4 domain CAI20_03925 PF00456 Transketolase, thiamine diphosphate binding domain CAI20_03925 PF02779 Transketolase, pyrimidine binding domain CAI20_03925 PF02780 Transketolase, C-terminal domain CAI20_03930 PF01434 Peptidase family M41 CAI20_03930 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_03930 PF17862 AAA+ lid domain CAI20_03930 PF06480 FtsH Extracellular CAI20_03935 PF14572 Phosphoribosyl synthetase-associated domain CAI20_03935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CAI20_03940 PF02686 Glu-tRNAGln amidotransferase C subunit CAI20_03945 PF07676 WD40-like Beta Propeller Repeat CAI20_03955 PF12706 Beta-lactamase superfamily domain CAI20_03955 PF17770 Ribonuclease J C-terminal domain CAI20_03955 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CAI20_03960 PF00226 DnaJ domain CAI20_03960 PF00684 DnaJ central domain CAI20_03960 PF01556 DnaJ C terminal domain CAI20_03975 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CAI20_03975 PF00586 AIR synthase related protein, N-terminal domain CAI20_03975 PF02769 AIR synthase related protein, C-terminal domain CAI20_03980 PF12705 PD-(D/E)XK nuclease superfamily CAI20_03995 PF10415 Fumarase C C-terminus CAI20_03995 PF00206 Lyase CAI20_04030 PF00210 Ferritin-like domain CAI20_04035 PF02104 SURF1 family CAI20_04040 PF08245 Mur ligase middle domain CAI20_04040 PF02875 Mur ligase family, glutamate ligase domain CAI20_04040 PF01225 Mur ligase family, catalytic domain CAI20_04050 PF00113 Enolase, C-terminal TIM barrel domain CAI20_04050 PF03952 Enolase, N-terminal domain CAI20_04055 PF01926 50S ribosome-binding GTPase CAI20_04055 PF01018 GTP1/OBG CAI20_04080 PF01235 Sodium:alanine symporter family CAI20_04100 PF00118 TCP-1/cpn60 chaperonin family CAI20_04105 PF00166 Chaperonin 10 Kd subunit CAI20_04110 PF01571 Aminomethyltransferase folate-binding domain CAI20_04130 PF00268 Ribonucleotide reductase, small chain CAI20_04155 PF09334 tRNA synthetases class I (M) CAI20_04155 PF08264 Anticodon-binding domain of tRNA CAI20_04170 PF01121 Dephospho-CoA kinase CAI20_04175 PF00570 HRDC domain CAI20_04175 PF01612 3'-5' exonuclease CAI20_04180 PF01979 Amidohydrolase family CAI20_04190 PF06271 RDD family CAI20_04200 PF00772 DnaB-like helicase N terminal domain CAI20_04200 PF03796 DnaB-like helicase C terminal domain CAI20_04205 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI20_04205 PF13244 Domain of unknown function (DUF4040) CAI20_04205 PF00361 Proton-conducting membrane transporter CAI20_04220 PF09115 DNA polymerase III, delta subunit, C terminal CAI20_04225 PF01300 Telomere recombination CAI20_04240 PF02875 Mur ligase family, glutamate ligase domain CAI20_04240 PF08245 Mur ligase middle domain CAI20_04245 PF01053 Cys/Met metabolism PLP-dependent enzyme CAI20_04250 PF01722 BolA-like protein CAI20_04255 PF00012 Hsp70 protein CAI20_04260 PF12111 Polyribonucleotide phosphorylase C terminal CAI20_04260 PF10150 Ribonuclease E/G family CAI20_04260 PF00575 S1 RNA binding domain CAI20_04265 PF00471 Ribosomal protein L33 CAI20_04280 PF01297 Zinc-uptake complex component A periplasmic CAI20_04285 PF00005 ABC transporter CAI20_04290 PF03109 ABC1 family CAI20_04300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_04305 PF10417 C-terminal domain of 1-Cys peroxiredoxin CAI20_04305 PF00578 AhpC/TSA family CAI20_04325 PF00902 Sec-independent protein translocase protein (TatC) CAI20_04330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CAI20_04330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CAI20_04360 PF13735 tRNA nucleotidyltransferase domain 2 putative CAI20_04360 PF12627 Probable RNA and SrmB- binding site of polymerase A CAI20_04360 PF01743 Poly A polymerase head domain CAI20_04370 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI20_04395 PF00950 ABC 3 transport family CAI20_04405 PF00288 GHMP kinases N terminal domain CAI20_04405 PF08544 GHMP kinases C terminal CAI20_04410 PF13361 UvrD-like helicase C-terminal domain CAI20_04410 PF00580 UvrD/REP helicase N-terminal domain CAI20_04410 PF12705 PD-(D/E)XK nuclease superfamily CAI20_04415 PF03918 Cytochrome C biogenesis protein CAI20_04425 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI20_04430 PF00684 DnaJ central domain CAI20_04430 PF01556 DnaJ C terminal domain CAI20_04430 PF00226 DnaJ domain CAI20_04440 PF08275 DNA primase catalytic core, N-terminal domain CAI20_04440 PF01807 CHC2 zinc finger CAI20_04440 PF13662 Toprim domain CAI20_04445 PF08241 Methyltransferase domain CAI20_04455 PF00814 Glycoprotease family CAI20_04465 PF13610 DDE domain CAI20_04475 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CAI20_04490 PF00005 ABC transporter CAI20_04495 PF02416 mttA/Hcf106 family CAI20_04505 PF06055 Exopolysaccharide synthesis, ExoD CAI20_04510 PF01406 tRNA synthetases class I (C) catalytic domain CAI20_04510 PF09190 DALR domain CAI20_04525 PF00075 RNase H CAI20_04530 PF01040 UbiA prenyltransferase family CAI20_04540 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CAI20_04540 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CAI20_04545 PF00529 HlyD membrane-fusion protein of T1SS CAI20_04545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI20_04555 PF00676 Dehydrogenase E1 component CAI20_04560 PF02934 GatB/GatE catalytic domain CAI20_04560 PF02637 GatB domain CAI20_04570 PF02899 Phage integrase, N-terminal SAM-like domain CAI20_04570 PF00589 Phage integrase family CAI20_04575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI20_04575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI20_04585 PF00115 Cytochrome C and Quinol oxidase polypeptide I CAI20_04595 PF08264 Anticodon-binding domain of tRNA CAI20_04595 PF00133 tRNA synthetases class I (I, L, M and V) CAI20_04610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CAI20_04630 PF05173 Dihydrodipicolinate reductase, C-terminus CAI20_04630 PF01113 Dihydrodipicolinate reductase, N-terminus CAI20_04635 PF00005 ABC transporter CAI20_04645 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CAI20_04645 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CAI20_04645 PF13288 DXP reductoisomerase C-terminal domain CAI20_04665 PF01348 Type II intron maturase CAI20_04665 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI20_04680 PF03129 Anticodon binding domain CAI20_04680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI20_04685 PF01648 4'-phosphopantetheinyl transferase superfamily CAI20_04715 PF00692 dUTPase CAI20_04725 PF01029 NusB family CAI20_04730 PF00885 6,7-dimethyl-8-ribityllumazine synthase CAI20_04735 PF14849 YidC periplasmic domain CAI20_04735 PF02096 60Kd inner membrane protein CAI20_04745 PF07549 SecD/SecF GG Motif CAI20_04745 PF02355 Protein export membrane protein CAI20_04750 PF00308 Bacterial dnaA protein CAI20_04750 PF11638 DnaA N-terminal domain CAI20_04750 PF08299 Bacterial dnaA protein helix-turn-helix CAI20_04755 PF00120 Glutamine synthetase, catalytic domain CAI20_04765 PF00873 AcrB/AcrD/AcrF family CAI20_04770 PF13184 NusA-like KH domain CAI20_04770 PF08529 NusA N-terminal domain CAI20_04770 PF00575 S1 RNA binding domain CAI20_04775 PF11987 Translation-initiation factor 2 CAI20_04775 PF00009 Elongation factor Tu GTP binding domain CAI20_04775 PF04760 Translation initiation factor IF-2, N-terminal region CAI20_04780 PF02033 Ribosome-binding factor A CAI20_04785 PF01040 UbiA prenyltransferase family CAI20_04795 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI20_04795 PF01348 Type II intron maturase CAI20_04815 PF00571 CBS domain CAI20_04815 PF01769 Divalent cation transporter CAI20_04815 PF03448 MgtE intracellular N domain CAI20_04820 PF00472 RF-1 domain CAI20_04820 PF03462 PCRF domain CAI20_04840 PF17782 DprA winged helix domain CAI20_04840 PF02481 DNA recombination-mediator protein A CAI20_04845 PF11953 Domain of unknown function (DUF3470) CAI20_04845 PF00037 4Fe-4S binding domain CAI20_04865 PF07478 D-ala D-ala ligase C-terminus CAI20_04865 PF01820 D-ala D-ala ligase N-terminus CAI20_04890 PF00849 RNA pseudouridylate synthase CAI20_04890 PF01479 S4 domain CAI20_04895 PF00083 Sugar (and other) transporter CAI20_04895 PF08946 Osmosensory transporter coiled coil CAI20_04900 PF00152 tRNA synthetases class II (D, K and N) CAI20_04900 PF02938 GAD domain CAI20_04900 PF01336 OB-fold nucleic acid binding domain CAI20_04910 PF00488 MutS domain V CAI20_04910 PF05192 MutS domain III CAI20_04910 PF05188 MutS domain II CAI20_04910 PF01624 MutS domain I CAI20_04910 PF05190 MutS family domain IV CAI20_04920 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CAI20_04920 PF01578 Cytochrome C assembly protein CAI20_04930 PF04002 RadC-like JAB domain CAI20_04935 PF00768 D-alanyl-D-alanine carboxypeptidase CAI20_04935 PF07943 Penicillin-binding protein 5, C-terminal domain CAI20_04940 PF02646 RmuC family CAI20_05010 PF13610 DDE domain CAI20_05085 PF01043 SecA preprotein cross-linking domain CAI20_05085 PF07516 SecA Wing and Scaffold domain CAI20_05085 PF07517 SecA DEAD-like domain CAI20_05085 PF02810 SEC-C motif CAI20_05115 PF13610 DDE domain CAI20_05135 PF13610 DDE domain CAI20_05160 PF13610 DDE domain CAI20_05170 PF12796 Ankyrin repeats (3 copies) CAI20_05170 PF13606 Ankyrin repeat CAI20_05175 PF13610 DDE domain CAI20_05205 PF11967 Recombination protein O N terminal CAI20_05205 PF02565 Recombination protein O C terminal CAI20_05210 PF00072 Response regulator receiver domain CAI20_05210 PF00990 Diguanylate cyclase, GGDEF domain CAI20_05220 PF05088 Bacterial NAD-glutamate dehydrogenase CAI20_05225 PF10431 C-terminal, D2-small domain, of ClpB protein CAI20_05225 PF00004 ATPase family associated with various cellular activities (AAA) CAI20_05225 PF17871 AAA lid domain CAI20_05225 PF07724 AAA domain (Cdc48 subfamily) CAI20_05225 PF02861 Clp amino terminal domain, pathogenicity island component CAI20_05235 PF13610 DDE domain CAI20_05250 PF08676 MutL C terminal dimerisation domain CAI20_05250 PF01119 DNA mismatch repair protein, C-terminal domain CAI20_05270 PF00005 ABC transporter CAI20_05275 PF00750 tRNA synthetases class I (R) CAI20_05275 PF03485 Arginyl tRNA synthetase N terminal domain CAI20_05275 PF05746 DALR anticodon binding domain CAI20_05310 PF00005 ABC transporter CAI20_05310 PF00664 ABC transporter transmembrane region CAI20_05315 PF13610 DDE domain CAI20_05365 PF13610 DDE domain CAI20_05395 PF13610 DDE domain CAI20_05400 PF13610 DDE domain CAI20_05410 PF00596 Class II Aldolase and Adducin N-terminal domain CAI20_05425 PF01258 Prokaryotic dksA/traR C4-type zinc finger CAI20_05430 PF00684 DnaJ central domain CAI20_05430 PF00226 DnaJ domain CAI20_05430 PF01556 DnaJ C terminal domain CAI20_05435 PF04551 GcpE protein CAI20_05450 PF09397 Ftsk gamma domain CAI20_05450 PF17854 FtsK alpha domain CAI20_05450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CAI20_05450 PF01580 FtsK/SpoIIIE family CAI20_05455 PF02325 YGGT family CAI20_05475 PF02545 Maf-like protein CAI20_05480 PF01176 Translation initiation factor 1A / IF-1 CAI20_05490 PF00709 Adenylosuccinate synthetase CAI20_05500 PF00696 Amino acid kinase family CAI20_05505 PF01926 50S ribosome-binding GTPase CAI20_05510 PF00472 RF-1 domain CAI20_05510 PF03462 PCRF domain CAI20_05535 PF13610 DDE domain CAI20_05565 PF13610 DDE domain CAI20_05570 PF07690 Major Facilitator Superfamily CAI20_05575 PF08245 Mur ligase middle domain CAI20_05575 PF02875 Mur ligase family, glutamate ligase domain CAI20_05575 PF01225 Mur ligase family, catalytic domain CAI20_05580 PF03330 Lytic transglycolase CAI20_05590 PF01494 FAD binding domain CAI20_05615 PF01467 Cytidylyltransferase-like CAI20_05630 PF01255 Putative undecaprenyl diphosphate synthase CAI20_05635 PF13610 DDE domain CAI20_05670 PF13610 DDE domain CAI20_05700 PF13610 DDE domain CAI20_05715 PF13610 DDE domain CAI20_05725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI20_05725 PF00364 Biotin-requiring enzyme CAI20_05725 PF02817 e3 binding domain CAI20_05760 PF06071 Protein of unknown function (DUF933) CAI20_05760 PF01926 50S ribosome-binding GTPase CAI20_05770 PF12826 Helix-hairpin-helix motif CAI20_05770 PF03120 NAD-dependent DNA ligase OB-fold domain CAI20_05770 PF01653 NAD-dependent DNA ligase adenylation domain CAI20_05770 PF00533 BRCA1 C Terminus (BRCT) domain CAI20_05790 PF00156 Phosphoribosyl transferase domain CAI20_05795 PF00375 Sodium:dicarboxylate symporter family CAI20_05805 PF01565 FAD binding domain CAI20_05805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CAI20_05810 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CAI20_05810 PF03900 Porphobilinogen deaminase, C-terminal domain CAI20_05820 PF02355 Protein export membrane protein CAI20_05830 PF00919 Uncharacterized protein family UPF0004 CAI20_05830 PF04055 Radical SAM superfamily CAI20_05855 PF00270 DEAD/DEAH box helicase CAI20_05855 PF00271 Helicase conserved C-terminal domain CAI20_05855 PF17191 RecG wedge domain CAI20_05865 PF00444 Ribosomal protein L36 CAI20_05870 PF03618 Kinase/pyrophosphorylase CAI20_05875 PF01578 Cytochrome C assembly protein CAI20_05885 PF03958 Bacterial type II/III secretion system short domain CAI20_05885 PF00263 Bacterial type II and III secretion system protein CAI20_05890 PF02540 NAD synthase CAI20_05890 PF00958 GMP synthase C terminal domain CAI20_05890 PF00117 Glutamine amidotransferase class-I CAI20_05910 PF06421 GTP-binding protein LepA C-terminus CAI20_05910 PF03144 Elongation factor Tu domain 2 CAI20_05910 PF00009 Elongation factor Tu GTP binding domain CAI20_05910 PF00679 Elongation factor G C-terminus CAI20_05910 PF14492 Elongation Factor G, domain II CAI20_05920 PF00462 Glutaredoxin CAI20_05925 PF01687 Riboflavin kinase CAI20_05925 PF06574 FAD synthetase CAI20_05930 PF01252 Signal peptidase (SPase) II CAI20_05935 PF00675 Insulinase (Peptidase family M16) CAI20_05935 PF05193 Peptidase M16 inactive domain CAI20_05945 PF00551 Formyl transferase CAI20_05975 PF01668 SmpB protein CAI20_05980 PF01790 Prolipoprotein diacylglyceryl transferase CAI20_05990 PF13091 PLD-like domain CAI20_05995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CAI20_06025 PF02779 Transketolase, pyrimidine binding domain CAI20_06025 PF16078 2-oxoglutarate dehydrogenase N-terminus CAI20_06025 PF16870 2-oxoglutarate dehydrogenase C-terminal CAI20_06025 PF00676 Dehydrogenase E1 component CAI20_06035 PF00579 tRNA synthetases class I (W and Y) CAI20_06040 PF01025 GrpE CAI20_06045 PF00348 Polyprenyl synthetase CAI20_06050 PF00886 Ribosomal protein S16 CAI20_06070 PF07498 Rho termination factor, N-terminal domain CAI20_06070 PF07497 Rho termination factor, RNA-binding domain CAI20_06070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI20_06075 PF00571 CBS domain CAI20_06075 PF00478 IMP dehydrogenase / GMP reductase domain CAI20_06080 PF00398 Ribosomal RNA adenine dimethylase CAI20_06090 PF00121 Triosephosphate isomerase CAI20_06200 PF01555 DNA methylase CAI20_06200 PF18755 Restriction Enzyme Adenine Methylase Associated CAI20_06290 PF04984 Phage tail sheath protein subtilisin-like domain CAI20_06290 PF17482 Phage tail sheath C-terminal domain CAI20_06340 PF13091 PLD-like domain CAI20_06355 PF08671 Anti-repressor SinI CAI20_06355 PF01381 Helix-turn-helix CAI20_06365 PF04002 RadC-like JAB domain CAI20_06375 PF08676 MutL C terminal dimerisation domain CAI20_06375 PF01119 DNA mismatch repair protein, C-terminal domain CAI20_06400 PF08245 Mur ligase middle domain