locus-tag class description WCLE_00010 PF11638 DnaA N-terminal domain WCLE_00010 PF00308 Bacterial dnaA protein WCLE_00010 PF08299 Bacterial dnaA protein helix-turn-helix WCLE_00040 PF00925 GTP cyclohydrolase II WCLE_00050 PF04335 VirB8 protein WCLE_00080 PF00437 Type II/IV secretion system protein WCLE_00090 PF02534 Type IV secretory system Conjugative DNA transfer WCLE_001000 PF00032 Cytochrome b(C-terminal)/b6/petD WCLE_001000 PF00033 Cytochrome b/b6/petB WCLE_001010 PF02167 Cytochrome C1 family WCLE_001010 PF00032 Cytochrome b(C-terminal)/b6/petD WCLE_001010 PF00033 Cytochrome b/b6/petB WCLE_001020 PF02151 UvrB/uvrC motif WCLE_001020 PF12344 Ultra-violet resistance protein B WCLE_001020 PF04851 Type III restriction enzyme, res subunit WCLE_001020 PF17757 UvrB interaction domain WCLE_001020 PF00271 Helicase conserved C-terminal domain WCLE_001030 PF01546 Peptidase family M20/M25/M40 WCLE_001030 PF07687 Peptidase dimerisation domain WCLE_001040 PF13685 Iron-containing alcohol dehydrogenase WCLE_001060 PF17782 DprA winged helix domain WCLE_001060 PF02481 DNA recombination-mediator protein A WCLE_001070 PF00037 4Fe-4S binding domain WCLE_001070 PF11953 Domain of unknown function (DUF3470) WCLE_001080 PF01820 D-ala D-ala ligase N-terminus WCLE_001080 PF07478 D-ala D-ala ligase C-terminus WCLE_001120 PF01551 Peptidase family M23 WCLE_001130 PF13603 Leucyl-tRNA synthetase, Domain 2 WCLE_001130 PF09334 tRNA synthetases class I (M) WCLE_001130 PF08264 Anticodon-binding domain of tRNA WCLE_001130 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_001140 PF00633 Helix-hairpin-helix motif WCLE_001140 PF10576 Iron-sulfur binding domain of endonuclease III WCLE_001140 PF00730 HhH-GPD superfamily base excision DNA repair protein WCLE_001150 PF18324 Hypothetical protein TT1725 WCLE_001150 PF00180 Isocitrate/isopropylmalate dehydrogenase WCLE_001210 PF00171 Aldehyde dehydrogenase family WCLE_001210 PF01619 Proline dehydrogenase WCLE_001210 PF14850 DNA-binding domain of Proline dehydrogenase WCLE_001210 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WCLE_001240 PF02910 Fumarate reductase flavoprotein C-term WCLE_001240 PF00890 FAD binding domain WCLE_00130 PF00512 His Kinase A (phospho-acceptor) domain WCLE_00130 PF08448 PAS fold WCLE_00130 PF13188 PAS domain WCLE_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WCLE_00130 PF00072 Response regulator receiver domain WCLE_001330 PF01145 SPFH domain / Band 7 family WCLE_001340 PF01145 SPFH domain / Band 7 family WCLE_001350 PF13180 PDZ domain WCLE_00140 PF01218 Coproporphyrinogen III oxidase WCLE_001410 PF12796 Ankyrin repeats (3 copies) WCLE_001420 PF09334 tRNA synthetases class I (M) WCLE_001420 PF08264 Anticodon-binding domain of tRNA WCLE_001440 PF03796 DnaB-like helicase C terminal domain WCLE_001440 PF00772 DnaB-like helicase N terminal domain WCLE_001460 PF06271 RDD family WCLE_001470 PF00580 UvrD/REP helicase N-terminal domain WCLE_001470 PF13361 UvrD-like helicase C-terminal domain WCLE_001470 PF12705 PD-(D/E)XK nuclease superfamily WCLE_001480 PF08544 GHMP kinases C terminal WCLE_001480 PF00288 GHMP kinases N terminal domain WCLE_00150 PF00330 Aconitase family (aconitate hydratase) WCLE_00150 PF00694 Aconitase C-terminal domain WCLE_001500 PF00950 ABC 3 transport family WCLE_001520 PF00692 dUTPase WCLE_001540 PF03023 Lipid II flippase MurJ WCLE_001590 PF13091 PLD-like domain WCLE_001620 PF02091 Glycyl-tRNA synthetase alpha subunit WCLE_001630 PF02092 Glycyl-tRNA synthetase beta subunit WCLE_001630 PF05746 DALR anticodon binding domain WCLE_001640 PF01541 GIY-YIG catalytic domain WCLE_001640 PF02151 UvrB/uvrC motif WCLE_001640 PF08459 UvrC Helix-hairpin-helix N-terminal WCLE_001650 PF17761 DUF1016 N-terminal domain WCLE_001650 PF06250 YhcG PDDEXK nuclease domain WCLE_00170 PF01556 DnaJ C terminal domain WCLE_00170 PF00226 DnaJ domain WCLE_00170 PF00684 DnaJ central domain WCLE_001730 PF00490 Delta-aminolevulinic acid dehydratase WCLE_001760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WCLE_001770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WCLE_001780 PF00361 Proton-conducting membrane transporter WCLE_001780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_001790 PF00361 Proton-conducting membrane transporter WCLE_00180 PF17191 RecG wedge domain WCLE_00180 PF00271 Helicase conserved C-terminal domain WCLE_00180 PF00270 DEAD/DEAH box helicase WCLE_001800 PF00361 Proton-conducting membrane transporter WCLE_001810 PF02237 Biotin protein ligase C terminal domain WCLE_001810 PF03099 Biotin/lipoate A/B protein ligase family WCLE_001830 PF03100 CcmE WCLE_001840 PF00005 ABC transporter WCLE_001850 PF02405 Permease MlaE WCLE_001910 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WCLE_001910 PF03900 Porphobilinogen deaminase, C-terminal domain WCLE_001920 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WCLE_001920 PF01565 FAD binding domain WCLE_001940 PF04551 GcpE protein WCLE_001950 PF02565 Recombination protein O C terminal WCLE_001950 PF11967 Recombination protein O N terminal WCLE_001960 PF00164 Ribosomal protein S12/S23 WCLE_001970 PF00177 Ribosomal protein S7p/S5e WCLE_001980 PF00679 Elongation factor G C-terminus WCLE_001980 PF14492 Elongation Factor G, domain II WCLE_001980 PF00009 Elongation factor Tu GTP binding domain WCLE_001980 PF03764 Elongation factor G, domain IV WCLE_001980 PF03144 Elongation factor Tu domain 2 WCLE_001990 PF00009 Elongation factor Tu GTP binding domain WCLE_001990 PF03143 Elongation factor Tu C-terminal domain WCLE_001990 PF03144 Elongation factor Tu domain 2 WCLE_002000 PF00338 Ribosomal protein S10p/S20e WCLE_002010 PF00297 Ribosomal protein L3 WCLE_002020 PF00573 Ribosomal protein L4/L1 family WCLE_002030 PF00276 Ribosomal protein L23 WCLE_002040 PF00181 Ribosomal Proteins L2, RNA binding domain WCLE_002040 PF03947 Ribosomal Proteins L2, C-terminal domain WCLE_002050 PF00203 Ribosomal protein S19 WCLE_002060 PF00237 Ribosomal protein L22p/L17e WCLE_002070 PF00189 Ribosomal protein S3, C-terminal domain WCLE_002070 PF07650 KH domain WCLE_002080 PF00252 Ribosomal protein L16p/L10e WCLE_002090 PF00831 Ribosomal L29 protein WCLE_002100 PF00366 Ribosomal protein S17 WCLE_002110 PF00238 Ribosomal protein L14p/L23e WCLE_002120 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WCLE_002130 PF00281 Ribosomal protein L5 WCLE_002130 PF00673 ribosomal L5P family C-terminus WCLE_002140 PF00253 Ribosomal protein S14p/S29e WCLE_002150 PF00410 Ribosomal protein S8 WCLE_002160 PF00347 Ribosomal protein L6 WCLE_002170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WCLE_002180 PF03719 Ribosomal protein S5, C-terminal domain WCLE_002180 PF00333 Ribosomal protein S5, N-terminal domain WCLE_002190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WCLE_00220 PF00140 Sigma-70 factor, region 1.2 WCLE_00220 PF04542 Sigma-70 region 2 WCLE_00220 PF04545 Sigma-70, region 4 WCLE_002200 PF00344 SecY translocase WCLE_002220 PF00416 Ribosomal protein S13/S18 WCLE_002230 PF00411 Ribosomal protein S11 WCLE_002240 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WCLE_002240 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WCLE_002240 PF01000 RNA polymerase Rpb3/RpoA insert domain WCLE_002250 PF01196 Ribosomal protein L17 WCLE_002260 PF02021 Uncharacterised protein family UPF0102 WCLE_00230 PF13505 Outer membrane protein beta-barrel domain WCLE_00240 PF02575 YbaB/EbfC DNA-binding family WCLE_002410 PF00476 DNA polymerase family A WCLE_002410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WCLE_002410 PF01367 5'-3' exonuclease, C-terminal SAM fold WCLE_002440 PF00115 Cytochrome C and Quinol oxidase polypeptide I WCLE_002450 PF02491 SHS2 domain inserted in FTSA WCLE_002460 PF01327 Polypeptide deformylase WCLE_002470 PF03167 Uracil DNA glycosylase superfamily WCLE_002490 PF07690 Major Facilitator Superfamily WCLE_002490 PF00083 Sugar (and other) transporter WCLE_00250 PF12169 DNA polymerase III subunits gamma and tau domain III WCLE_002510 PF14437 MafB19-like deaminase WCLE_002520 PF06418 CTP synthase N-terminus WCLE_002520 PF00117 Glutamine amidotransferase class-I WCLE_002540 PF04002 RadC-like JAB domain WCLE_002580 PF02780 Transketolase, C-terminal domain WCLE_002580 PF02779 Transketolase, pyrimidine binding domain WCLE_002580 PF00364 Biotin-requiring enzyme WCLE_002590 PF03448 MgtE intracellular N domain WCLE_002590 PF00571 CBS domain WCLE_002590 PF01769 Divalent cation transporter WCLE_00260 PF00043 Glutathione S-transferase, C-terminal domain WCLE_00260 PF02798 Glutathione S-transferase, N-terminal domain WCLE_002600 PF00472 RF-1 domain WCLE_002600 PF03462 PCRF domain WCLE_002640 PF08543 Phosphomethylpyrimidine kinase WCLE_002690 PF00578 AhpC/TSA family WCLE_002690 PF10417 C-terminal domain of 1-Cys peroxiredoxin WCLE_002700 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_002720 PF00589 Phage integrase family WCLE_002720 PF02899 Phage integrase, N-terminal SAM-like domain WCLE_002730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WCLE_002730 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_002750 PF00986 DNA gyrase B subunit, carboxyl terminus WCLE_002750 PF01751 Toprim domain WCLE_002750 PF00204 DNA gyrase B WCLE_002750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WCLE_002820 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_00290 PF13462 Thioredoxin WCLE_002950 PF00814 Glycoprotease family WCLE_002960 PF00596 Class II Aldolase and Adducin N-terminal domain WCLE_003010 PF10609 NUBPL iron-transfer P-loop NTPase WCLE_003020 PF01494 FAD binding domain WCLE_003060 PF00588 SpoU rRNA Methylase family WCLE_003060 PF08032 RNA 2'-O ribose methyltransferase substrate binding WCLE_003070 PF01027 Inhibitor of apoptosis-promoting Bax1 WCLE_003080 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WCLE_00310 PF13840 ACT domain WCLE_00310 PF01842 ACT domain WCLE_00310 PF00696 Amino acid kinase family WCLE_003100 PF08245 Mur ligase middle domain WCLE_003100 PF02875 Mur ligase family, glutamate ligase domain WCLE_003110 PF01053 Cys/Met metabolism PLP-dependent enzyme WCLE_003130 PF00012 Hsp70 protein WCLE_003140 PF10150 Ribonuclease E/G family WCLE_003140 PF12111 Polyribonucleotide phosphorylase C terminal WCLE_003140 PF00575 S1 RNA binding domain WCLE_003150 PF00471 Ribosomal protein L33 WCLE_003190 PF00830 Ribosomal L28 family WCLE_003200 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WCLE_003200 PF04055 Radical SAM superfamily WCLE_003220 PF00768 D-alanyl-D-alanine carboxypeptidase WCLE_003220 PF07943 Penicillin-binding protein 5, C-terminal domain WCLE_003250 PF13735 tRNA nucleotidyltransferase domain 2 putative WCLE_003250 PF01743 Poly A polymerase head domain WCLE_003250 PF12627 Probable RNA and SrmB- binding site of polymerase A WCLE_003270 PF01926 50S ribosome-binding GTPase WCLE_003270 PF06071 Protein of unknown function (DUF933) WCLE_003290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WCLE_003350 PF00391 PEP-utilising enzyme, mobile domain WCLE_003350 PF02896 PEP-utilising enzyme, TIM barrel domain WCLE_003350 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WCLE_003380 PF08275 DNA primase catalytic core, N-terminal domain WCLE_003380 PF01807 CHC2 zinc finger WCLE_003380 PF13662 Toprim domain WCLE_003390 PF08241 Methyltransferase domain WCLE_00340 PF02899 Phage integrase, N-terminal SAM-like domain WCLE_00340 PF00589 Phage integrase family WCLE_003420 PF00849 RNA pseudouridylate synthase WCLE_003520 PF00483 Nucleotidyl transferase WCLE_003520 PF01050 Mannose-6-phosphate isomerase WCLE_003540 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WCLE_003550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WCLE_003580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WCLE_003580 PF02142 MGS-like domain WCLE_003580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WCLE_00360 PF01649 Ribosomal protein S20 WCLE_003630 PF00586 AIR synthase related protein, N-terminal domain WCLE_003630 PF02769 AIR synthase related protein, C-terminal domain WCLE_003630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WCLE_003670 PF00035 Double-stranded RNA binding motif WCLE_003670 PF14622 Ribonuclease-III-like WCLE_003680 PF01180 Dihydroorotate dehydrogenase WCLE_00370 PF00285 Citrate synthase, C-terminal domain WCLE_003700 PF01039 Carboxyl transferase domain WCLE_003740 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WCLE_003740 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WCLE_003740 PF06827 Zinc finger found in FPG and IleRS WCLE_003750 PF01243 Pyridoxamine 5'-phosphate oxidase WCLE_003750 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WCLE_003770 PF13932 GidA associated domain WCLE_003770 PF01134 Glucose inhibited division protein A WCLE_003780 PF01321 Creatinase/Prolidase N-terminal domain WCLE_003780 PF00557 Metallopeptidase family M24 WCLE_00380 PF00072 Response regulator receiver domain WCLE_00380 PF00486 Transcriptional regulatory protein, C terminal WCLE_003800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WCLE_003800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WCLE_003810 PF02504 Fatty acid synthesis protein WCLE_003820 PF01783 Ribosomal L32p protein family WCLE_00390 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WCLE_00390 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WCLE_003920 PF03147 Ferredoxin-fold anticodon binding domain WCLE_003920 PF01588 Putative tRNA binding domain WCLE_003920 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WCLE_003920 PF03484 tRNA synthetase B5 domain WCLE_003920 PF03483 B3/4 domain WCLE_003940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WCLE_003940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WCLE_003950 PF00902 Sec-independent protein translocase protein (TatC) WCLE_00400 PF04608 Phosphatidylglycerophosphatase A WCLE_004040 PF00692 dUTPase WCLE_004050 PF03631 Virulence factor BrkB WCLE_004070 PF14492 Elongation Factor G, domain II WCLE_004070 PF00679 Elongation factor G C-terminus WCLE_004070 PF06421 GTP-binding protein LepA C-terminus WCLE_004070 PF03144 Elongation factor Tu domain 2 WCLE_004070 PF00009 Elongation factor Tu GTP binding domain WCLE_004140 PF03060 Nitronate monooxygenase WCLE_004170 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WCLE_004220 PF00364 Biotin-requiring enzyme WCLE_004220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WCLE_004220 PF02817 e3 binding domain WCLE_004260 PF00202 Aminotransferase class-III WCLE_004270 PF00571 CBS domain WCLE_004270 PF03471 Transporter associated domain WCLE_004270 PF01595 Cyclin M transmembrane N-terminal domain WCLE_004280 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WCLE_004290 PF02441 Flavoprotein WCLE_004300 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WCLE_004300 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WCLE_004310 PF01522 Polysaccharide deacetylase WCLE_004310 PF00457 Glycosyl hydrolases family 11 WCLE_004310 PF03422 Carbohydrate binding module (family 6) WCLE_004620 PF00075 RNase H WCLE_004630 PF01040 UbiA prenyltransferase family WCLE_004640 PF00115 Cytochrome C and Quinol oxidase polypeptide I WCLE_004650 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WCLE_004650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WCLE_004660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WCLE_004660 PF00529 HlyD membrane-fusion protein of T1SS WCLE_004700 PF00925 GTP cyclohydrolase II WCLE_004700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WCLE_004710 PF01272 Transcription elongation factor, GreA/GreB, C-term WCLE_004710 PF03449 Transcription elongation factor, N-terminal WCLE_004720 PF02874 ATP synthase alpha/beta family, beta-barrel domain WCLE_004720 PF00306 ATP synthase alpha/beta chain, C terminal domain WCLE_004720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_004730 PF00213 ATP synthase delta (OSCP) subunit WCLE_004750 PF01556 DnaJ C terminal domain WCLE_004750 PF00226 DnaJ domain WCLE_004750 PF00684 DnaJ central domain WCLE_004780 PF13525 Outer membrane lipoprotein WCLE_004790 PF01709 Transcriptional regulator WCLE_00480 PF13085 2Fe-2S iron-sulfur cluster binding domain WCLE_004800 PF01551 Peptidase family M23 WCLE_004800 PF08460 Bacterial SH3 domain WCLE_004880 PF02646 RmuC family WCLE_00490 PF02130 Uncharacterized protein family UPF0054 WCLE_004990 PF01545 Cation efflux family WCLE_005020 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WCLE_005020 PF00953 Glycosyl transferase family 4 WCLE_005030 PF01351 Ribonuclease HII WCLE_005040 PF02630 SCO1/SenC WCLE_005050 PF00929 Exonuclease WCLE_005070 PF02556 Preprotein translocase subunit SecB WCLE_005090 PF08442 ATP-grasp domain WCLE_005090 PF00549 CoA-ligase WCLE_00510 PF12327 FtsZ family, C-terminal domain WCLE_00510 PF00091 Tubulin/FtsZ family, GTPase domain WCLE_005100 PF02629 CoA binding domain WCLE_005100 PF00549 CoA-ligase WCLE_005110 PF01678 Diaminopimelate epimerase WCLE_005120 PF02632 BioY family WCLE_005190 PF05088 Bacterial NAD-glutamate dehydrogenase WCLE_00520 PF01078 Magnesium chelatase, subunit ChlI WCLE_00520 PF13335 Magnesium chelatase, subunit ChlI C-terminal WCLE_005200 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WCLE_005210 PF01975 Survival protein SurE WCLE_005220 PF03120 NAD-dependent DNA ligase OB-fold domain WCLE_005220 PF01653 NAD-dependent DNA ligase adenylation domain WCLE_005220 PF00533 BRCA1 C Terminus (BRCT) domain WCLE_005230 PF02075 Crossover junction endodeoxyribonuclease RuvC WCLE_005240 PF00510 Cytochrome c oxidase subunit III WCLE_005250 PF03070 TENA/THI-4/PQQC family WCLE_005280 PF00270 DEAD/DEAH box helicase WCLE_005280 PF00271 Helicase conserved C-terminal domain WCLE_005280 PF18074 Primosomal protein N C-terminal domain WCLE_005280 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WCLE_005280 PF17764 3′ DNA-binding domain (3′BD) WCLE_00530 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_00530 PF07724 AAA domain (Cdc48 subfamily) WCLE_00530 PF17871 AAA lid domain WCLE_00530 PF02861 Clp amino terminal domain, pathogenicity island component WCLE_00530 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_005300 PF03129 Anticodon binding domain WCLE_005300 PF13393 Histidyl-tRNA synthetase WCLE_005320 PF00226 DnaJ domain WCLE_005320 PF00684 DnaJ central domain WCLE_005320 PF01556 DnaJ C terminal domain WCLE_005330 PF00579 tRNA synthetases class I (W and Y) WCLE_005360 PF00293 NUDIX domain WCLE_005370 PF01026 TatD related DNase WCLE_005380 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WCLE_005380 PF00056 lactate/malate dehydrogenase, NAD binding domain WCLE_005390 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WCLE_005400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WCLE_005410 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WCLE_005420 PF01230 HIT domain WCLE_005440 PF08245 Mur ligase middle domain WCLE_005440 PF01225 Mur ligase family, catalytic domain WCLE_005440 PF02875 Mur ligase family, glutamate ligase domain WCLE_005480 PF00005 ABC transporter WCLE_005490 PF02416 mttA/Hcf106 family WCLE_00550 PF00478 IMP dehydrogenase / GMP reductase domain WCLE_00550 PF00571 CBS domain WCLE_005500 PF06055 Exopolysaccharide synthesis, ExoD WCLE_005510 PF09190 DALR domain WCLE_005510 PF01406 tRNA synthetases class I (C) catalytic domain WCLE_005530 PF00162 Phosphoglycerate kinase WCLE_005540 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_005570 PF03462 PCRF domain WCLE_005570 PF00472 RF-1 domain WCLE_005580 PF01926 50S ribosome-binding GTPase WCLE_005590 PF00696 Amino acid kinase family WCLE_005600 PF00266 Aminotransferase class-V WCLE_005640 PF00749 tRNA synthetases class I (E and Q), catalytic domain WCLE_005660 PF02785 Biotin carboxylase C-terminal domain WCLE_005660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WCLE_005660 PF00289 Biotin carboxylase, N-terminal domain WCLE_005670 PF02628 Cytochrome oxidase assembly protein WCLE_005700 PF00137 ATP synthase subunit C WCLE_005710 PF00119 ATP synthase A chain WCLE_005730 PF00398 Ribosomal RNA adenine dimethylase WCLE_005750 PF00121 Triosephosphate isomerase WCLE_005790 PF03918 Cytochrome C biogenesis protein WCLE_005810 PF00111 2Fe-2S iron-sulfur cluster binding domain WCLE_005820 PF08245 Mur ligase middle domain WCLE_00590 PF00684 DnaJ central domain WCLE_00590 PF00226 DnaJ domain WCLE_00590 PF01556 DnaJ C terminal domain WCLE_005910 PF01555 DNA methylase WCLE_005930 PF02272 DHHA1 domain WCLE_005930 PF17768 RecJ OB domain WCLE_005930 PF01368 DHH family WCLE_005950 PF00034 Cytochrome c WCLE_005970 PF00206 Lyase WCLE_005970 PF10415 Fumarase C C-terminus WCLE_005990 PF00923 Transaldolase/Fructose-6-phosphate aldolase WCLE_00600 PF02355 Protein export membrane protein WCLE_006010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WCLE_006020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_006020 PF02874 ATP synthase alpha/beta family, beta-barrel domain WCLE_006030 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_006040 PF00468 Ribosomal protein L34 WCLE_006050 PF00825 Ribonuclease P WCLE_00610 PF00375 Sodium:dicarboxylate symporter family WCLE_006100 PF03477 ATP cone domain WCLE_006100 PF02867 Ribonucleotide reductase, barrel domain WCLE_006100 PF00317 Ribonucleotide reductase, all-alpha domain WCLE_006110 PF03652 Holliday junction resolvase WCLE_006130 PF02660 Glycerol-3-phosphate acyltransferase WCLE_006140 PF01235 Sodium:alanine symporter family WCLE_006150 PF01066 CDP-alcohol phosphatidyltransferase WCLE_006160 PF02666 Phosphatidylserine decarboxylase WCLE_006170 PF00154 recA bacterial DNA recombination protein WCLE_006180 PF01195 Peptidyl-tRNA hydrolase WCLE_006190 PF01386 Ribosomal L25p family WCLE_006190 PF14693 Ribosomal protein TL5, C-terminal domain WCLE_00620 PF00156 Phosphoribosyl transferase domain WCLE_006200 PF01979 Amidohydrolase family WCLE_006210 PF00639 PPIC-type PPIASE domain WCLE_006210 PF09312 SurA N-terminal domain WCLE_006220 PF01926 50S ribosome-binding GTPase WCLE_006220 PF10396 GTP-binding protein TrmE N-terminus WCLE_006220 PF12631 MnmE helical domain WCLE_006280 PF00829 Ribosomal prokaryotic L21 protein WCLE_006290 PF01016 Ribosomal L27 protein WCLE_006330 PF02511 Thymidylate synthase complementing protein WCLE_006340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WCLE_006380 PF00464 Serine hydroxymethyltransferase WCLE_006420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WCLE_006420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WCLE_006430 PF05193 Peptidase M16 inactive domain WCLE_006430 PF00675 Insulinase (Peptidase family M16) WCLE_006440 PF00664 ABC transporter transmembrane region WCLE_006440 PF00005 ABC transporter WCLE_006450 PF00462 Glutaredoxin WCLE_006470 PF00390 Malic enzyme, N-terminal domain WCLE_006470 PF03949 Malic enzyme, NAD binding domain WCLE_006470 PF01515 Phosphate acetyl/butaryl transferase WCLE_006480 PF01066 CDP-alcohol phosphatidyltransferase WCLE_006500 PF17854 FtsK alpha domain WCLE_006500 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WCLE_006500 PF01580 FtsK/SpoIIIE family WCLE_006500 PF09397 Ftsk gamma domain WCLE_006530 PF01208 Uroporphyrinogen decarboxylase (URO-D) WCLE_006540 PF03471 Transporter associated domain WCLE_006540 PF00571 CBS domain WCLE_006560 PF00586 AIR synthase related protein, N-terminal domain WCLE_006560 PF02769 AIR synthase related protein, C-terminal domain WCLE_006570 PF01259 SAICAR synthetase WCLE_006580 PF01746 tRNA (Guanine-1)-methyltransferase WCLE_006590 PF01245 Ribosomal protein L19 WCLE_006600 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_006680 PF00749 tRNA synthetases class I (E and Q), catalytic domain WCLE_00670 PF01258 Prokaryotic dksA/traR C4-type zinc finger WCLE_006700 PF13717 zinc-ribbon domain WCLE_006710 PF14602 Hexapeptide repeat of succinyl-transferase WCLE_006710 PF00132 Bacterial transferase hexapeptide (six repeats) WCLE_006710 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WCLE_006750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WCLE_006750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WCLE_006750 PF10531 SLBB domain WCLE_006770 PF12706 Beta-lactamase superfamily domain WCLE_006770 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WCLE_006770 PF17770 Ribonuclease J C-terminal domain WCLE_006780 PF04052 TolB amino-terminal domain WCLE_006780 PF07676 WD40-like Beta Propeller Repeat WCLE_006810 PF01795 MraW methylase family WCLE_006820 PF00083 Sugar (and other) transporter WCLE_006860 PF01176 Translation initiation factor 1A / IF-1 WCLE_006870 PF02545 Maf-like protein WCLE_00690 PF01728 FtsJ-like methyltransferase WCLE_006940 PF02978 Signal peptide binding domain WCLE_006940 PF02881 SRP54-type protein, helical bundle domain WCLE_006940 PF00448 SRP54-type protein, GTPase domain WCLE_00700 PF10691 Protein of unknown function (DUF2497) WCLE_007010 PF00892 EamA-like transporter family WCLE_007040 PF01235 Sodium:alanine symporter family WCLE_007060 PF00118 TCP-1/cpn60 chaperonin family WCLE_007070 PF00166 Chaperonin 10 Kd subunit WCLE_007100 PF01098 Cell cycle protein WCLE_007110 PF01209 ubiE/COQ5 methyltransferase family WCLE_007130 PF07690 Major Facilitator Superfamily WCLE_007140 PF02779 Transketolase, pyrimidine binding domain WCLE_007140 PF00456 Transketolase, thiamine diphosphate binding domain WCLE_007140 PF02780 Transketolase, C-terminal domain WCLE_007150 PF01479 S4 domain WCLE_007150 PF00163 Ribosomal protein S4/S9 N-terminal domain WCLE_007170 PF04384 Iron-sulphur cluster assembly WCLE_007190 PF01872 RibD C-terminal domain WCLE_007190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WCLE_00720 PF00572 Ribosomal protein L13 WCLE_007200 PF01966 HD domain WCLE_007200 PF13286 Phosphohydrolase-associated domain WCLE_007210 PF01521 Iron-sulphur cluster biosynthesis WCLE_007220 PF00005 ABC transporter WCLE_007250 PF00266 Aminotransferase class-V WCLE_007290 PF00005 ABC transporter WCLE_00730 PF00380 Ribosomal protein S9/S16 WCLE_007320 PF00152 tRNA synthetases class II (D, K and N) WCLE_007320 PF01336 OB-fold nucleic acid binding domain WCLE_007320 PF02938 GAD domain WCLE_007330 PF00083 Sugar (and other) transporter WCLE_007330 PF08946 Osmosensory transporter coiled coil WCLE_007340 PF05198 Translation initiation factor IF-3, N-terminal domain WCLE_007340 PF00707 Translation initiation factor IF-3, C-terminal domain WCLE_007350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_007350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WCLE_007350 PF03129 Anticodon binding domain WCLE_007370 PF01380 SIS domain WCLE_007380 PF02699 Preprotein translocase subunit WCLE_007400 PF01624 MutS domain I WCLE_007400 PF05192 MutS domain III WCLE_007400 PF05190 MutS family domain IV WCLE_007400 PF00488 MutS domain V WCLE_007400 PF05188 MutS domain II WCLE_007410 PF00570 HRDC domain WCLE_007410 PF01612 3'-5' exonuclease WCLE_007420 PF01121 Dephospho-CoA kinase WCLE_007490 PF10502 Signal peptidase, peptidase S26 WCLE_00750 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WCLE_007500 PF00012 Hsp70 protein WCLE_007510 PF07743 HSCB C-terminal oligomerisation domain WCLE_007510 PF00226 DnaJ domain WCLE_007520 PF01521 Iron-sulphur cluster biosynthesis WCLE_007530 PF01592 NifU-like N terminal domain WCLE_007540 PF02881 SRP54-type protein, helical bundle domain WCLE_007540 PF00448 SRP54-type protein, GTPase domain WCLE_007550 PF18073 Rubredoxin metal binding domain WCLE_007560 PF00107 Zinc-binding dehydrogenase WCLE_007560 PF08240 Alcohol dehydrogenase GroES-like domain WCLE_007560 PF14765 Polyketide synthase dehydratase WCLE_007560 PF00698 Acyl transferase domain WCLE_007560 PF08659 KR domain WCLE_007560 PF00550 Phosphopantetheine attachment site WCLE_007560 PF00109 Beta-ketoacyl synthase, N-terminal domain WCLE_007560 PF02801 Beta-ketoacyl synthase, C-terminal domain WCLE_007560 PF16197 Ketoacyl-synthetase C-terminal extension WCLE_007580 PF00226 DnaJ domain WCLE_007580 PF00684 DnaJ central domain WCLE_007580 PF01556 DnaJ C terminal domain WCLE_007600 PF00355 Rieske [2Fe-2S] domain WCLE_007600 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WCLE_007610 PF00521 DNA gyrase/topoisomerase IV, subunit A WCLE_007610 PF03989 DNA gyrase C-terminal domain, beta-propeller WCLE_007650 PF04452 RNA methyltransferase WCLE_007670 PF00271 Helicase conserved C-terminal domain WCLE_007670 PF00270 DEAD/DEAH box helicase WCLE_007680 PF00313 'Cold-shock' DNA-binding domain WCLE_007690 PF01523 Putative modulator of DNA gyrase WCLE_007700 PF00231 ATP synthase WCLE_007750 PF13361 UvrD-like helicase C-terminal domain WCLE_007750 PF00580 UvrD/REP helicase N-terminal domain WCLE_007770 PF00085 Thioredoxin WCLE_007840 PF00676 Dehydrogenase E1 component WCLE_007840 PF16078 2-oxoglutarate dehydrogenase N-terminus WCLE_007840 PF02779 Transketolase, pyrimidine binding domain WCLE_007840 PF16870 2-oxoglutarate dehydrogenase C-terminal WCLE_00790 PF01113 Dihydrodipicolinate reductase, N-terminus WCLE_00790 PF05173 Dihydrodipicolinate reductase, C-terminus WCLE_007920 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WCLE_007950 PF01578 Cytochrome C assembly protein WCLE_007990 PF01029 NusB family WCLE_00800 PF00005 ABC transporter WCLE_008000 PF00885 6,7-dimethyl-8-ribityllumazine synthase WCLE_008010 PF14849 YidC periplasmic domain WCLE_008010 PF02096 60Kd inner membrane protein WCLE_008030 PF02355 Protein export membrane protein WCLE_008030 PF07549 SecD/SecF GG Motif WCLE_008070 PF09225 Restriction endonuclease PvuII WCLE_008080 PF01555 DNA methylase WCLE_00810 PF13288 DXP reductoisomerase C-terminal domain WCLE_00810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WCLE_00810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WCLE_008120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WCLE_008120 PF01578 Cytochrome C assembly protein WCLE_008150 PF17827 PrmC N-terminal domain WCLE_008150 PF05175 Methyltransferase small domain WCLE_008150 PF02390 Putative methyltransferase WCLE_008180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WCLE_008180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WCLE_008330 PF01409 tRNA synthetases class II core domain (F) WCLE_008330 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WCLE_008340 PF14602 Hexapeptide repeat of succinyl-transferase WCLE_008340 PF12804 MobA-like NTP transferase domain WCLE_008340 PF00132 Bacterial transferase hexapeptide (six repeats) WCLE_00840 PF00676 Dehydrogenase E1 component WCLE_00850 PF01523 Putative modulator of DNA gyrase WCLE_008500 PF00202 Aminotransferase class-III WCLE_008520 PF13847 Methyltransferase domain WCLE_008540 PF00155 Aminotransferase class I and II WCLE_008550 PF06968 Biotin and Thiamin Synthesis associated domain WCLE_008550 PF04055 Radical SAM superfamily WCLE_008570 PF02222 ATP-grasp domain WCLE_008570 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WCLE_008580 PF04379 ApaG domain WCLE_008590 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_008630 PF17755 UvrA DNA-binding domain WCLE_008630 PF17760 UvrA interaction domain WCLE_008670 PF01176 Translation initiation factor 1A / IF-1 WCLE_008680 PF02545 Maf-like protein WCLE_008730 PF12169 DNA polymerase III subunits gamma and tau domain III WCLE_008740 PF01300 Telomere recombination WCLE_008790 PF01791 DeoC/LacD family aldolase WCLE_00880 PF07724 AAA domain (Cdc48 subfamily) WCLE_00880 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_00880 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_008840 PF12838 4Fe-4S dicluster domain WCLE_008850 PF08529 NusA N-terminal domain WCLE_008850 PF13184 NusA-like KH domain WCLE_008850 PF00575 S1 RNA binding domain WCLE_008860 PF00009 Elongation factor Tu GTP binding domain WCLE_008860 PF11987 Translation-initiation factor 2 WCLE_008860 PF04760 Translation initiation factor IF-2, N-terminal region WCLE_008870 PF02033 Ribosome-binding factor A WCLE_008880 PF01040 UbiA prenyltransferase family WCLE_008890 PF01098 Cell cycle protein WCLE_00890 PF00227 Proteasome subunit WCLE_008900 PF00361 Proton-conducting membrane transporter WCLE_008950 PF00183 Hsp90 protein WCLE_008970 PF00155 Aminotransferase class I and II WCLE_008990 PF09285 Elongation factor P, C-terminal WCLE_008990 PF08207 Elongation factor P (EF-P) KOW-like domain WCLE_008990 PF01132 Elongation factor P (EF-P) OB domain WCLE_009000 PF05239 PRC-barrel domain WCLE_009000 PF01782 RimM N-terminal domain WCLE_009040 PF00216 Bacterial DNA-binding protein WCLE_009050 PF13411 MerR HTH family regulatory protein WCLE_009080 PF01632 Ribosomal protein L35 WCLE_009090 PF00453 Ribosomal protein L20 WCLE_009100 PF02911 Formyl transferase, C-terminal domain WCLE_009100 PF00551 Formyl transferase WCLE_009120 PF00117 Glutamine amidotransferase class-I WCLE_009120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WCLE_009150 PF03144 Elongation factor Tu domain 2 WCLE_009150 PF03143 Elongation factor Tu C-terminal domain WCLE_009150 PF00009 Elongation factor Tu GTP binding domain WCLE_009180 PF00467 KOW motif WCLE_009180 PF02357 Transcription termination factor nusG WCLE_009190 PF03946 Ribosomal protein L11, N-terminal domain WCLE_009190 PF00298 Ribosomal protein L11, RNA binding domain WCLE_009200 PF00687 Ribosomal protein L1p/L10e family WCLE_009210 PF00466 Ribosomal protein L10 WCLE_009230 PF04561 RNA polymerase Rpb2, domain 2 WCLE_009230 PF04997 RNA polymerase Rpb1, domain 1 WCLE_009230 PF00623 RNA polymerase Rpb1, domain 2 WCLE_009230 PF04983 RNA polymerase Rpb1, domain 3 WCLE_009230 PF04998 RNA polymerase Rpb1, domain 5 WCLE_009230 PF04560 RNA polymerase Rpb2, domain 7 WCLE_009230 PF00562 RNA polymerase Rpb2, domain 6 WCLE_009230 PF10385 RNA polymerase beta subunit external 1 domain WCLE_009230 PF05000 RNA polymerase Rpb1, domain 4 WCLE_009230 PF04565 RNA polymerase Rpb2, domain 3 WCLE_009230 PF04563 RNA polymerase beta subunit WCLE_009250 PF04546 Sigma-70, non-essential region WCLE_009250 PF03979 Sigma-70 factor, region 1.1 WCLE_009250 PF00140 Sigma-70 factor, region 1.2 WCLE_009250 PF04542 Sigma-70 region 2 WCLE_009250 PF04539 Sigma-70 region 3 WCLE_009250 PF04545 Sigma-70, region 4 WCLE_009260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WCLE_009280 PF00361 Proton-conducting membrane transporter WCLE_009280 PF13244 Domain of unknown function (DUF4040) WCLE_009280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_009290 PF03334 Na+/H+ antiporter subunit WCLE_009310 PF01192 RNA polymerase Rpb6 WCLE_009350 PF00731 AIR carboxylase WCLE_009360 PF08676 MutL C terminal dimerisation domain WCLE_009360 PF01119 DNA mismatch repair protein, C-terminal domain WCLE_00940 PF00762 Ferrochelatase WCLE_009430 PF02463 RecF/RecN/SMC N terminal domain WCLE_009440 PF00578 AhpC/TSA family WCLE_009450 PF00202 Aminotransferase class-III WCLE_009500 PF01467 Cytidylyltransferase-like WCLE_009530 PF01255 Putative undecaprenyl diphosphate synthase WCLE_009540 PF01765 Ribosome recycling factor WCLE_009550 PF00696 Amino acid kinase family WCLE_009560 PF00889 Elongation factor TS WCLE_009570 PF00318 Ribosomal protein S2 WCLE_00960 PF00334 Nucleoside diphosphate kinase WCLE_009640 PF17676 LD-carboxypeptidase C-terminal domain WCLE_009640 PF02016 LD-carboxypeptidase N-terminal domain WCLE_009650 PF03099 Biotin/lipoate A/B protein ligase family WCLE_009660 PF04860 Phage portal protein WCLE_009690 PF02768 DNA polymerase III beta subunit, C-terminal domain WCLE_009690 PF02767 DNA polymerase III beta subunit, central domain WCLE_009690 PF00712 DNA polymerase III beta subunit, N-terminal domain WCLE_00970 PF01297 Zinc-uptake complex component A periplasmic WCLE_009700 PF01416 tRNA pseudouridine synthase WCLE_009730 PF00677 Lumazine binding domain WCLE_009790 PF01668 SmpB protein WCLE_00980 PF00005 ABC transporter WCLE_009800 PF01790 Prolipoprotein diacylglyceryl transferase WCLE_009870 PF01425 Amidase WCLE_009890 PF00109 Beta-ketoacyl synthase, N-terminal domain WCLE_009890 PF02801 Beta-ketoacyl synthase, C-terminal domain WCLE_00990 PF03109 ABC1 family WCLE_009900 PF00550 Phosphopantetheine attachment site WCLE_009910 PF00348 Polyprenyl synthetase WCLE_009930 PF13244 Domain of unknown function (DUF4040) WCLE_009930 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_009930 PF00361 Proton-conducting membrane transporter WCLE_010060 PF13520 Amino acid permease WCLE_010080 PF01808 AICARFT/IMPCHase bienzyme WCLE_010080 PF02142 MGS-like domain WCLE_010100 PF02401 LytB protein WCLE_010110 PF03717 Penicillin-binding Protein dimerisation domain WCLE_010110 PF00905 Penicillin binding protein transpeptidase domain WCLE_010130 PF00210 Ferritin-like domain WCLE_010150 PF00999 Sodium/hydrogen exchanger family WCLE_010150 PF02254 TrkA-N domain WCLE_010170 PF02223 Thymidylate kinase WCLE_010190 PF01921 tRNA synthetases class I (K) WCLE_010210 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WCLE_010220 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_010240 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_010250 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_010270 PF00557 Metallopeptidase family M24 WCLE_010300 PF02774 Semialdehyde dehydrogenase, dimerisation domain WCLE_010300 PF01118 Semialdehyde dehydrogenase, NAD binding domain WCLE_010320 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_010330 PF07977 FabA-like domain WCLE_010350 PF01103 Surface antigen WCLE_010350 PF07244 Surface antigen variable number repeat WCLE_010360 PF17820 PDZ domain WCLE_010360 PF02163 Peptidase family M50 WCLE_010400 PF01926 50S ribosome-binding GTPase WCLE_010400 PF07650 KH domain WCLE_010500 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WCLE_010500 PF14572 Phosphoribosyl synthetase-associated domain WCLE_010530 PF00919 Uncharacterized protein family UPF0004 WCLE_010530 PF04055 Radical SAM superfamily WCLE_010550 PF03958 Bacterial type II/III secretion system short domain WCLE_010550 PF00263 Bacterial type II and III secretion system protein WCLE_010620 PF00701 Dihydrodipicolinate synthetase family WCLE_010630 PF00436 Single-strand binding protein family WCLE_010680 PF02687 FtsX-like permease family WCLE_010680 PF12704 MacB-like periplasmic core domain WCLE_010690 PF02934 GatB/GatE catalytic domain WCLE_010690 PF02637 GatB domain WCLE_010700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_010700 PF07498 Rho termination factor, N-terminal domain WCLE_010700 PF07497 Rho termination factor, RNA-binding domain WCLE_010740 PF00814 Glycoprotease family WCLE_010750 PF00664 ABC transporter transmembrane region WCLE_010750 PF00005 ABC transporter WCLE_010760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WCLE_010760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WCLE_010760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WCLE_010760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WCLE_010780 PF02542 YgbB family WCLE_010780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WCLE_010830 PF08264 Anticodon-binding domain of tRNA WCLE_010830 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_010850 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WCLE_010890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WCLE_010890 PF00364 Biotin-requiring enzyme WCLE_010890 PF02817 e3 binding domain WCLE_010920 PF03618 Kinase/pyrophosphorylase WCLE_010930 PF00444 Ribosomal protein L36 WCLE_010960 PF02789 Cytosol aminopeptidase family, N-terminal domain WCLE_010960 PF00883 Cytosol aminopeptidase family, catalytic domain WCLE_010990 PF00625 Guanylate kinase WCLE_011040 PF00719 Inorganic pyrophosphatase WCLE_011070 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WCLE_011070 PF01926 50S ribosome-binding GTPase WCLE_011130 PF00750 tRNA synthetases class I (R) WCLE_011130 PF05746 DALR anticodon binding domain WCLE_011130 PF03485 Arginyl tRNA synthetase N terminal domain WCLE_011220 PF01555 DNA methylase WCLE_011250 PF05491 RuvB C-terminal winged helix domain WCLE_011250 PF17864 RuvB AAA lid domain WCLE_011250 PF05496 Holliday junction DNA helicase RuvB P-loop domain WCLE_011260 PF01330 RuvA N terminal domain WCLE_011260 PF07499 RuvA, C-terminal domain WCLE_011270 PF03330 Lytic transglycolase WCLE_011280 PF02875 Mur ligase family, glutamate ligase domain WCLE_011280 PF01225 Mur ligase family, catalytic domain WCLE_011280 PF08245 Mur ligase middle domain WCLE_011290 PF03952 Enolase, N-terminal domain WCLE_011290 PF00113 Enolase, C-terminal TIM barrel domain WCLE_011300 PF01926 50S ribosome-binding GTPase WCLE_011300 PF01018 GTP1/OBG WCLE_011360 PF01509 TruB family pseudouridylate synthase (N terminal domain) WCLE_011360 PF16198 tRNA pseudouridylate synthase B C-terminal domain WCLE_011370 PF00312 Ribosomal protein S15 WCLE_011380 PF00575 S1 RNA binding domain WCLE_011380 PF00013 KH domain WCLE_011380 PF03725 3' exoribonuclease family, domain 2 WCLE_011380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WCLE_011380 PF01138 3' exoribonuclease family, domain 1 WCLE_011390 PF00834 Ribulose-phosphate 3 epimerase family WCLE_011430 PF05362 Lon protease (S16) C-terminal proteolytic domain WCLE_011430 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_011430 PF02190 ATP-dependent protease La (LON) substrate-binding domain WCLE_011440 PF07724 AAA domain (Cdc48 subfamily) WCLE_011440 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_011440 PF06689 ClpX C4-type zinc finger WCLE_011450 PF00574 Clp protease WCLE_011460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WCLE_011460 PF05698 Bacterial trigger factor protein (TF) C-terminus WCLE_011460 PF05697 Bacterial trigger factor protein (TF) WCLE_011480 PF04972 BON domain WCLE_011490 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WCLE_011490 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WCLE_011500 PF04101 Glycosyltransferase family 28 C-terminal domain WCLE_011500 PF03033 Glycosyltransferase family 28 N-terminal domain WCLE_011520 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_011520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WCLE_011530 PF00575 S1 RNA binding domain WCLE_011540 PF00216 Bacterial DNA-binding protein WCLE_011630 PF01513 ATP-NAD kinase WCLE_011640 PF01197 Ribosomal protein L31 WCLE_011650 PF00698 Acyl transferase domain WCLE_011670 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WCLE_011670 PF01676 Metalloenzyme superfamily WCLE_011720 PF03070 TENA/THI-4/PQQC family WCLE_011740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WCLE_011740 PF00809 Pterin binding enzyme WCLE_011750 PF00186 Dihydrofolate reductase WCLE_011790 PF13537 Glutamine amidotransferase domain WCLE_011790 PF00156 Phosphoribosyl transferase domain WCLE_011800 PF03741 Integral membrane protein TerC family WCLE_011850 PF00551 Formyl transferase WCLE_011870 PF00675 Insulinase (Peptidase family M16) WCLE_011870 PF05193 Peptidase M16 inactive domain WCLE_011880 PF01252 Signal peptidase (SPase) II WCLE_011890 PF06574 FAD synthetase WCLE_011890 PF01687 Riboflavin kinase WCLE_011900 PF00462 Glutaredoxin WCLE_011920 PF02245 Methylpurine-DNA glycosylase (MPG) WCLE_011960 PF13368 Topoisomerase C-terminal repeat WCLE_011960 PF01751 Toprim domain WCLE_011960 PF01131 DNA topoisomerase WCLE_011960 PF01396 Topoisomerase DNA binding C4 zinc finger WCLE_011980 PF01207 Dihydrouridine synthase (Dus) WCLE_012000 PF02403 Seryl-tRNA synthetase N-terminal domain WCLE_012000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_012010 PF02844 Phosphoribosylglycinamide synthetase, N domain WCLE_012010 PF02843 Phosphoribosylglycinamide synthetase, C domain WCLE_012010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WCLE_012030 PF02540 NAD synthase WCLE_012030 PF00117 Glutamine amidotransferase class-I WCLE_012030 PF00958 GMP synthase C terminal domain WCLE_012040 PF02132 RecR protein WCLE_012040 PF13662 Toprim domain WCLE_012070 PF00579 tRNA synthetases class I (W and Y) WCLE_012080 PF01025 GrpE WCLE_012090 PF00348 Polyprenyl synthetase WCLE_012100 PF00886 Ribosomal protein S16 WCLE_012110 PF01648 4'-phosphopantetheinyl transferase superfamily WCLE_012120 PF03129 Anticodon binding domain WCLE_012120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_012140 PF00905 Penicillin binding protein transpeptidase domain WCLE_012140 PF03717 Penicillin-binding Protein dimerisation domain WCLE_012210 PF00691 OmpA family WCLE_012220 PF01171 PP-loop family WCLE_012230 PF01434 Peptidase family M41 WCLE_012230 PF06480 FtsH Extracellular WCLE_012230 PF17862 AAA+ lid domain WCLE_012230 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_012300 PF02810 SEC-C motif WCLE_012300 PF07517 SecA DEAD-like domain WCLE_012300 PF01043 SecA preprotein cross-linking domain WCLE_012300 PF07516 SecA Wing and Scaffold domain WCLE_012340 PF00268 Ribonucleotide reductase, small chain WCLE_012360 PF00919 Uncharacterized protein family UPF0004 WCLE_012360 PF04055 Radical SAM superfamily WCLE_012360 PF01938 TRAM domain WCLE_012370 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_012370 PF08264 Anticodon-binding domain of tRNA WCLE_012410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WCLE_012410 PF01411 tRNA synthetases class II (A) WCLE_012430 PF02811 PHP domain WCLE_012430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WCLE_012430 PF07733 Bacterial DNA polymerase III alpha NTPase domain WCLE_012430 PF14579 Helix-hairpin-helix motif WCLE_012440 PF01250 Ribosomal protein S6 WCLE_012450 PF01084 Ribosomal protein S18 WCLE_012460 PF01281 Ribosomal protein L9, N-terminal domain WCLE_012460 PF03948 Ribosomal protein L9, C-terminal domain WCLE_012510 PF00146 NADH dehydrogenase WCLE_012520 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WCLE_012520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WCLE_012520 PF00384 Molybdopterin oxidoreductase WCLE_012540 PF00709 Adenylosuccinate synthetase WCLE_012560 PF00120 Glutamine synthetase, catalytic domain