locus-tag class description L2227_00080 PF07508 Recombinase L2227_00080 PF00239 Resolvase, N terminal domain L2227_00080 PF13408 Recombinase zinc beta ribbon domain L2227_00135 PF17482 Phage tail sheath C-terminal domain L2227_00135 PF04984 Phage tail sheath protein subtilisin-like domain L2227_00190 PF01381 Helix-turn-helix L2227_00200 PF04002 RadC-like JAB domain L2227_00205 PF01381 Helix-turn-helix L2227_00220 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_00245 PF00226 DnaJ domain L2227_00245 PF01556 DnaJ C terminal domain L2227_00245 PF00684 DnaJ central domain L2227_00345 PF06250 YhcG PDDEXK nuclease domain L2227_00345 PF17761 DUF1016 N-terminal domain L2227_00370 PF18755 Restriction Enzyme Adenine Methylase Associated L2227_00370 PF01555 DNA methylase L2227_00385 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_00385 PF01348 Type II intron maturase L2227_00390 PF01425 Amidase L2227_00410 PF01416 tRNA pseudouridine synthase L2227_00415 PF02768 DNA polymerase III beta subunit, C-terminal domain L2227_00415 PF02767 DNA polymerase III beta subunit, central domain L2227_00415 PF00712 DNA polymerase III beta subunit, N-terminal domain L2227_00425 PF00140 Sigma-70 factor, region 1.2 L2227_00425 PF04542 Sigma-70 region 2 L2227_00425 PF04545 Sigma-70, region 4 L2227_00430 PF13505 Outer membrane protein beta-barrel domain L2227_00450 PF01527 Transposase L2227_00455 PF00665 Integrase core domain L2227_00455 PF13333 Integrase core domain L2227_00455 PF13276 HTH-like domain L2227_00465 PF01513 ATP-NAD kinase L2227_00470 PF01197 Ribosomal protein L31 L2227_00475 PF00698 Acyl transferase domain L2227_00480 PF06415 BPG-independent PGAM N-terminus (iPGM_N) L2227_00480 PF01676 Metalloenzyme superfamily L2227_00505 PF01808 AICARFT/IMPCHase bienzyme L2227_00505 PF02142 MGS-like domain L2227_00515 PF00551 Formyl transferase L2227_00515 PF02911 Formyl transferase, C-terminal domain L2227_00520 PF00453 Ribosomal protein L20 L2227_00525 PF01632 Ribosomal protein L35 L2227_00535 PF01411 tRNA synthetases class II (A) L2227_00535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L2227_00535 PF02272 DHHA1 domain L2227_00555 PF01921 tRNA synthetases class I (K) L2227_00565 PF03135 CagE, TrbE, VirB family, component of type IV transporter system L2227_00570 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L2227_00575 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L2227_00580 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L2227_00585 PF04610 TrbL/VirB6 plasmid conjugal transfer protein L2227_00610 PF08245 Mur ligase middle domain L2227_00615 PF00111 2Fe-2S iron-sulfur cluster binding domain L2227_00625 PF03918 Cytochrome C biogenesis protein L2227_00640 PF02875 Mur ligase family, glutamate ligase domain L2227_00640 PF08245 Mur ligase middle domain L2227_00655 PF03364 Polyketide cyclase / dehydrase and lipid transport L2227_00660 PF13462 Thioredoxin L2227_00675 PF02371 Transposase IS116/IS110/IS902 family L2227_00675 PF01548 Transposase L2227_00690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L2227_00690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L2227_00690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L2227_00690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L2227_00700 PF02896 PEP-utilising enzyme, TIM barrel domain L2227_00700 PF00391 PEP-utilising enzyme, mobile domain L2227_00700 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain L2227_00710 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded L2227_00725 PF02779 Transketolase, pyrimidine binding domain L2227_00725 PF02780 Transketolase, C-terminal domain L2227_00725 PF00456 Transketolase, thiamine diphosphate binding domain L2227_00730 PF00163 Ribosomal protein S4/S9 N-terminal domain L2227_00730 PF01479 S4 domain L2227_00740 PF04384 Iron-sulphur cluster assembly L2227_00755 PF00830 Ribosomal L28 family L2227_00760 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family L2227_00760 PF04055 Radical SAM superfamily L2227_00765 PF01209 ubiE/COQ5 methyltransferase family L2227_00770 PF01098 Cell cycle protein L2227_00780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_00795 PF00664 ABC transporter transmembrane region L2227_00795 PF00005 ABC transporter L2227_00805 PF00750 tRNA synthetases class I (R) L2227_00805 PF05746 DALR anticodon binding domain L2227_00805 PF03485 Arginyl tRNA synthetase N terminal domain L2227_00835 PF00005 ABC transporter L2227_00845 PF02938 GAD domain L2227_00845 PF00152 tRNA synthetases class II (D, K and N) L2227_00845 PF01336 OB-fold nucleic acid binding domain L2227_00850 PF08946 Osmosensory transporter coiled coil L2227_00850 PF00083 Sugar (and other) transporter L2227_00855 PF01479 S4 domain L2227_00855 PF00849 RNA pseudouridylate synthase L2227_00860 PF00676 Dehydrogenase E1 component L2227_00865 PF03653 Uncharacterised protein family (UPF0093) L2227_00885 PF00919 Uncharacterized protein family UPF0004 L2227_00885 PF01938 TRAM domain L2227_00885 PF04055 Radical SAM superfamily L2227_00900 PF00133 tRNA synthetases class I (I, L, M and V) L2227_00900 PF08264 Anticodon-binding domain of tRNA L2227_00910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain L2227_00910 PF03483 B3/4 domain L2227_00910 PF03484 tRNA synthetase B5 domain L2227_00910 PF01588 Putative tRNA binding domain L2227_00910 PF03147 Ferredoxin-fold anticodon binding domain L2227_00920 PF00119 ATP synthase A chain L2227_00925 PF00137 ATP synthase subunit C L2227_00945 PF02628 Cytochrome oxidase assembly protein L2227_00950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2227_00950 PF00289 Biotin carboxylase, N-terminal domain L2227_00950 PF00364 Biotin-requiring enzyme L2227_00950 PF02785 Biotin carboxylase C-terminal domain L2227_00950 PF18140 Propionyl-coenzyme A carboxylase BT domain L2227_00960 PF00749 tRNA synthetases class I (E and Q), catalytic domain L2227_00965 PF00890 FAD binding domain L2227_00965 PF02910 Fumarate reductase flavoprotein C-term L2227_00975 PF00625 Guanylate kinase L2227_01000 PF01926 50S ribosome-binding GTPase L2227_01000 PF06071 Protein of unknown function (DUF933) L2227_01010 PF13735 tRNA nucleotidyltransferase domain 2 putative L2227_01010 PF01743 Poly A polymerase head domain L2227_01010 PF12627 Probable RNA and SrmB- binding site of polymerase A L2227_01030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L2227_01030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L2227_01035 PF00902 Sec-independent protein translocase protein (TatC) L2227_01040 PF01316 Arginine repressor, DNA binding domain L2227_01040 PF02863 Arginine repressor, C-terminal domain L2227_01045 PF00497 Bacterial extracellular solute-binding proteins, family 3 L2227_01050 PF00528 Binding-protein-dependent transport system inner membrane component L2227_01055 PF00005 ABC transporter L2227_01075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family L2227_01090 PF08264 Anticodon-binding domain of tRNA L2227_01090 PF00133 tRNA synthetases class I (I, L, M and V) L2227_01120 PF01176 Translation initiation factor 1A / IF-1 L2227_01125 PF02545 Maf-like protein L2227_01140 PF01235 Sodium:alanine symporter family L2227_01170 PF01548 Transposase L2227_01170 PF02371 Transposase IS116/IS110/IS902 family L2227_01175 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_01175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2227_01185 PF04101 Glycosyltransferase family 28 C-terminal domain L2227_01185 PF03033 Glycosyltransferase family 28 N-terminal domain L2227_01190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain L2227_01190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain L2227_01195 PF04972 BON domain L2227_01205 PF05697 Bacterial trigger factor protein (TF) L2227_01205 PF05698 Bacterial trigger factor protein (TF) C-terminus L2227_01205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2227_01210 PF00574 Clp protease L2227_01215 PF07724 AAA domain (Cdc48 subfamily) L2227_01215 PF06689 ClpX C4-type zinc finger L2227_01215 PF10431 C-terminal, D2-small domain, of ClpB protein L2227_01220 PF00004 ATPase family associated with various cellular activities (AAA) L2227_01220 PF05362 Lon protease (S16) C-terminal proteolytic domain L2227_01220 PF02190 ATP-dependent protease La (LON) substrate-binding domain L2227_01230 PF00115 Cytochrome C and Quinol oxidase polypeptide I L2227_01240 PF01368 DHH family L2227_01240 PF02272 DHHA1 domain L2227_01240 PF17768 RecJ OB domain L2227_01255 PF01571 Aminomethyltransferase folate-binding domain L2227_01260 PF00166 Chaperonin 10 Kd subunit L2227_01265 PF00118 TCP-1/cpn60 chaperonin family L2227_01270 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L2227_01270 PF02542 YgbB family L2227_01275 PF00075 RNase H L2227_01280 PF01040 UbiA prenyltransferase family L2227_01285 PF00115 Cytochrome C and Quinol oxidase polypeptide I L2227_01290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain L2227_01290 PF02790 Cytochrome C oxidase subunit II, transmembrane domain L2227_01300 PF00665 Integrase core domain L2227_01300 PF13333 Integrase core domain L2227_01300 PF13276 HTH-like domain L2227_01305 PF01527 Transposase L2227_01310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2227_01310 PF00529 HlyD membrane-fusion protein of T1SS L2227_01335 PF00925 GTP cyclohydrolase II L2227_01335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L2227_01340 PF03449 Transcription elongation factor, N-terminal L2227_01340 PF01272 Transcription elongation factor, GreA/GreB, C-term L2227_01345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2227_01345 PF00306 ATP synthase alpha/beta chain, C terminal domain L2227_01345 PF02874 ATP synthase alpha/beta family, beta-barrel domain L2227_01350 PF00213 ATP synthase delta (OSCP) subunit L2227_01355 PF02021 Uncharacterised protein family UPF0102 L2227_01360 PF01196 Ribosomal protein L17 L2227_01365 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain L2227_01365 PF01000 RNA polymerase Rpb3/RpoA insert domain L2227_01365 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain L2227_01370 PF00411 Ribosomal protein S11 L2227_01375 PF00416 Ribosomal protein S13/S18 L2227_01385 PF00344 SecY translocase L2227_01390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A L2227_01395 PF00333 Ribosomal protein S5, N-terminal domain L2227_01395 PF03719 Ribosomal protein S5, C-terminal domain L2227_01400 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast L2227_01405 PF00347 Ribosomal protein L6 L2227_01410 PF00410 Ribosomal protein S8 L2227_01415 PF00253 Ribosomal protein S14p/S29e L2227_01420 PF00281 Ribosomal protein L5 L2227_01420 PF00673 ribosomal L5P family C-terminus L2227_01425 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 L2227_01430 PF00238 Ribosomal protein L14p/L23e L2227_01435 PF00366 Ribosomal protein S17 L2227_01440 PF00831 Ribosomal L29 protein L2227_01445 PF00252 Ribosomal protein L16p/L10e L2227_01450 PF07650 KH domain L2227_01450 PF00189 Ribosomal protein S3, C-terminal domain L2227_01455 PF00237 Ribosomal protein L22p/L17e L2227_01460 PF00203 Ribosomal protein S19 L2227_01465 PF03947 Ribosomal Proteins L2, C-terminal domain L2227_01465 PF00181 Ribosomal Proteins L2, RNA binding domain L2227_01470 PF00276 Ribosomal protein L23 L2227_01475 PF00573 Ribosomal protein L4/L1 family L2227_01480 PF00297 Ribosomal protein L3 L2227_01485 PF00338 Ribosomal protein S10p/S20e L2227_01490 PF03144 Elongation factor Tu domain 2 L2227_01490 PF00009 Elongation factor Tu GTP binding domain L2227_01490 PF03143 Elongation factor Tu C-terminal domain L2227_01505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain L2227_01505 PF00117 Glutamine amidotransferase class-I L2227_01525 PF07690 Major Facilitator Superfamily L2227_01545 PF00692 dUTPase L2227_01560 PF02386 Cation transport protein L2227_01565 PF03448 MgtE intracellular N domain L2227_01565 PF01769 Divalent cation transporter L2227_01565 PF00571 CBS domain L2227_01575 PF13276 HTH-like domain L2227_01575 PF13333 Integrase core domain L2227_01575 PF00665 Integrase core domain L2227_01580 PF00665 Integrase core domain L2227_01580 PF13276 HTH-like domain L2227_01580 PF13333 Integrase core domain L2227_01590 PF01527 Transposase L2227_01600 PF00444 Ribosomal protein L36 L2227_01605 PF03618 Kinase/pyrophosphorylase L2227_01610 PF01578 Cytochrome C assembly protein L2227_01625 PF00709 Adenylosuccinate synthetase L2227_01650 PF00679 Elongation factor G C-terminus L2227_01650 PF14492 Elongation Factor G, domain II L2227_01650 PF00009 Elongation factor Tu GTP binding domain L2227_01650 PF06421 GTP-binding protein LepA C-terminus L2227_01650 PF03144 Elongation factor Tu domain 2 L2227_01670 PF00364 Biotin-requiring enzyme L2227_01670 PF02779 Transketolase, pyrimidine binding domain L2227_01670 PF02780 Transketolase, C-terminal domain L2227_01675 PF00004 ATPase family associated with various cellular activities (AAA) L2227_01675 PF17862 AAA+ lid domain L2227_01675 PF01434 Peptidase family M41 L2227_01685 PF07690 Major Facilitator Superfamily L2227_01685 PF00083 Sugar (and other) transporter L2227_01705 PF14437 MafB19-like deaminase L2227_01710 PF06418 CTP synthase N-terminus L2227_01710 PF00117 Glutamine amidotransferase class-I L2227_01735 PF08241 Methyltransferase domain L2227_01740 PF13662 Toprim domain L2227_01740 PF08275 DNA primase catalytic core, N-terminal domain L2227_01740 PF01807 CHC2 zinc finger L2227_01745 PF13784 Fic/DOC family N-terminal L2227_01745 PF02661 Fic/DOC family L2227_01750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2227_01755 PF00665 Integrase core domain L2227_01755 PF13333 Integrase core domain L2227_01755 PF13276 HTH-like domain L2227_01760 PF13276 HTH-like domain L2227_01760 PF00665 Integrase core domain L2227_01760 PF13333 Integrase core domain L2227_01770 PF01527 Transposase L2227_01775 PF00005 ABC transporter L2227_01780 PF05173 Dihydrodipicolinate reductase, C-terminus L2227_01780 PF01113 Dihydrodipicolinate reductase, N-terminus L2227_01800 PF00950 ABC 3 transport family L2227_01810 PF08544 GHMP kinases C terminal L2227_01810 PF00288 GHMP kinases N terminal domain L2227_01815 PF13361 UvrD-like helicase C-terminal domain L2227_01815 PF12705 PD-(D/E)XK nuclease superfamily L2227_01815 PF00580 UvrD/REP helicase N-terminal domain L2227_01825 PF04002 RadC-like JAB domain L2227_01855 PF00892 EamA-like transporter family L2227_01860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L2227_01860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L2227_01860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L2227_01865 PF07690 Major Facilitator Superfamily L2227_01870 PF01212 Beta-eliminating lyase L2227_01875 PF01212 Beta-eliminating lyase L2227_01880 PF00664 ABC transporter transmembrane region L2227_01880 PF00005 ABC transporter L2227_01900 PF16363 GDP-mannose 4,6 dehydratase L2227_01905 PF00132 Bacterial transferase hexapeptide (six repeats) L2227_01905 PF14602 Hexapeptide repeat of succinyl-transferase L2227_01905 PF12804 MobA-like NTP transferase domain L2227_01915 PF08676 MutL C terminal dimerisation domain L2227_01915 PF01119 DNA mismatch repair protein, C-terminal domain L2227_01930 PF01734 Patatin-like phospholipase L2227_01975 PF04984 Phage tail sheath protein subtilisin-like domain L2227_01975 PF17482 Phage tail sheath C-terminal domain L2227_02045 PF01555 DNA methylase L2227_02130 PF00239 Resolvase, N terminal domain L2227_02130 PF13408 Recombinase zinc beta ribbon domain L2227_02130 PF07508 Recombinase L2227_02175 PF06271 RDD family L2227_02185 PF03796 DnaB-like helicase C terminal domain L2227_02185 PF00772 DnaB-like helicase N terminal domain L2227_02195 PF08264 Anticodon-binding domain of tRNA L2227_02195 PF09334 tRNA synthetases class I (M) L2227_02230 PF01476 LysM domain L2227_02230 PF08525 Opacity-associated protein A N-terminal motif L2227_02230 PF01551 Peptidase family M23 L2227_02235 PF01709 Transcriptional regulator L2227_02240 PF13525 Outer membrane lipoprotein L2227_02250 PF01066 CDP-alcohol phosphatidyltransferase L2227_02255 PF01515 Phosphate acetyl/butaryl transferase L2227_02255 PF03949 Malic enzyme, NAD binding domain L2227_02255 PF00390 Malic enzyme, N-terminal domain L2227_02275 PF00462 Glutaredoxin L2227_02280 PF00206 Lyase L2227_02280 PF10415 Fumarase C C-terminus L2227_02285 PF01926 50S ribosome-binding GTPase L2227_02285 PF01018 GTP1/OBG L2227_02290 PF03952 Enolase, N-terminal domain L2227_02290 PF00113 Enolase, C-terminal TIM barrel domain L2227_02300 PF02875 Mur ligase family, glutamate ligase domain L2227_02300 PF08245 Mur ligase middle domain L2227_02300 PF01225 Mur ligase family, catalytic domain L2227_02305 PF03330 Lytic transglycolase L2227_02325 PF04055 Radical SAM superfamily L2227_02325 PF00919 Uncharacterized protein family UPF0004 L2227_02350 PF00032 Cytochrome b(C-terminal)/b6/petD L2227_02350 PF02167 Cytochrome C1 family L2227_02350 PF00033 Cytochrome b/b6/petB L2227_02360 PF00226 DnaJ domain L2227_02360 PF01556 DnaJ C terminal domain L2227_02360 PF00684 DnaJ central domain L2227_02370 PF03129 Anticodon binding domain L2227_02370 PF13393 Histidyl-tRNA synthetase L2227_02375 PF01975 Survival protein SurE L2227_02380 PF00448 SRP54-type protein, GTPase domain L2227_02380 PF02978 Signal peptide binding domain L2227_02380 PF02881 SRP54-type protein, helical bundle domain L2227_02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_02395 PF07977 FabA-like domain L2227_02405 PF01103 Surface antigen L2227_02405 PF07244 Surface antigen variable number repeat L2227_02410 PF17820 PDZ domain L2227_02410 PF02163 Peptidase family M50 L2227_02425 PF00216 Bacterial DNA-binding protein L2227_02430 PF00575 S1 RNA binding domain L2227_02435 PF02390 Putative methyltransferase L2227_02445 PF01258 Prokaryotic dksA/traR C4-type zinc finger L2227_02465 PF00814 Glycoprotease family L2227_02475 PF00268 Ribonucleotide reductase, small chain L2227_02495 PF06250 YhcG PDDEXK nuclease domain L2227_02495 PF17761 DUF1016 N-terminal domain L2227_02500 PF02565 Recombination protein O C terminal L2227_02500 PF11967 Recombination protein O N terminal L2227_02505 PF00072 Response regulator receiver domain L2227_02505 PF00990 Diguanylate cyclase, GGDEF domain L2227_02515 PF05088 Bacterial NAD-glutamate dehydrogenase L2227_02520 PF07724 AAA domain (Cdc48 subfamily) L2227_02520 PF10431 C-terminal, D2-small domain, of ClpB protein L2227_02520 PF17871 AAA lid domain L2227_02520 PF00004 ATPase family associated with various cellular activities (AAA) L2227_02520 PF02861 Clp amino terminal domain, pathogenicity island component L2227_02535 PF03144 Elongation factor Tu domain 2 L2227_02535 PF00009 Elongation factor Tu GTP binding domain L2227_02535 PF00679 Elongation factor G C-terminus L2227_02540 PF00156 Phosphoribosyl transferase domain L2227_02545 PF00375 Sodium:dicarboxylate symporter family L2227_02550 PF01979 Amidohydrolase family L2227_02560 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal L2227_02560 PF01578 Cytochrome C assembly protein L2227_02585 PF07549 SecD/SecF GG Motif L2227_02585 PF02355 Protein export membrane protein L2227_02595 PF02096 60Kd inner membrane protein L2227_02595 PF14849 YidC periplasmic domain L2227_02600 PF00885 6,7-dimethyl-8-ribityllumazine synthase L2227_02605 PF01029 NusB family L2227_02610 PF01609 Transposase DDE domain L2227_02640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_02745 PF01555 DNA methylase L2227_02760 PF07508 Recombinase L2227_02760 PF00239 Resolvase, N terminal domain L2227_02760 PF13408 Recombinase zinc beta ribbon domain L2227_02835 PF01381 Helix-turn-helix L2227_02860 PF00892 EamA-like transporter family L2227_02865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L2227_02865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L2227_02865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L2227_02870 PF07690 Major Facilitator Superfamily L2227_02875 PF01212 Beta-eliminating lyase L2227_02880 PF01212 Beta-eliminating lyase L2227_02895 PF00664 ABC transporter transmembrane region L2227_02895 PF00005 ABC transporter L2227_02915 PF16363 GDP-mannose 4,6 dehydratase L2227_02920 PF12804 MobA-like NTP transferase domain L2227_02920 PF00132 Bacterial transferase hexapeptide (six repeats) L2227_02920 PF14602 Hexapeptide repeat of succinyl-transferase L2227_02925 PF12419 SNF2 Helicase protein L2227_02925 PF00271 Helicase conserved C-terminal domain L2227_02925 PF00176 SNF2 family N-terminal domain L2227_02940 PF13408 Recombinase zinc beta ribbon domain L2227_02940 PF00239 Resolvase, N terminal domain L2227_02940 PF07508 Recombinase L2227_02945 PF01348 Type II intron maturase L2227_02945 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_02955 PF01527 Transposase L2227_02960 PF13276 HTH-like domain L2227_02960 PF00665 Integrase core domain L2227_02960 PF13333 Integrase core domain L2227_02980 PF01467 Cytidylyltransferase-like L2227_02995 PF01255 Putative undecaprenyl diphosphate synthase L2227_03005 PF01765 Ribosome recycling factor L2227_03010 PF00696 Amino acid kinase family L2227_03015 PF00889 Elongation factor TS L2227_03020 PF00318 Ribosomal protein S2 L2227_03030 PF02699 Preprotein translocase subunit L2227_03035 PF01380 SIS domain L2227_03055 PF01565 FAD binding domain L2227_03055 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain L2227_03060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain L2227_03060 PF03900 Porphobilinogen deaminase, C-terminal domain L2227_03065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L2227_03065 PF00364 Biotin-requiring enzyme L2227_03065 PF02817 e3 binding domain L2227_03080 PF01043 SecA preprotein cross-linking domain L2227_03080 PF02810 SEC-C motif L2227_03080 PF07517 SecA DEAD-like domain L2227_03080 PF07516 SecA Wing and Scaffold domain L2227_03100 PF00923 Transaldolase/Fructose-6-phosphate aldolase L2227_03115 PF01527 Transposase L2227_03125 PF13276 HTH-like domain L2227_03125 PF00665 Integrase core domain L2227_03125 PF13333 Integrase core domain L2227_03130 PF13333 Integrase core domain L2227_03130 PF00665 Integrase core domain L2227_03130 PF13276 HTH-like domain L2227_03135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain L2227_03135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain L2227_03140 PF02441 Flavoprotein L2227_03145 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) L2227_03150 PF00571 CBS domain L2227_03150 PF03471 Transporter associated domain L2227_03150 PF01595 Cyclin M transmembrane N-terminal domain L2227_03155 PF00202 Aminotransferase class-III L2227_03160 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit L2227_03175 PF02646 RmuC family L2227_03185 PF00596 Class II Aldolase and Adducin N-terminal domain L2227_03195 PF00814 Glycoprotease family L2227_03220 PF00266 Aminotransferase class-V L2227_03225 PF02129 X-Pro dipeptidyl-peptidase (S15 family) L2227_03235 PF00005 ABC transporter L2227_03240 PF01521 Iron-sulphur cluster biosynthesis L2227_03245 PF01966 HD domain L2227_03245 PF13286 Phosphohydrolase-associated domain L2227_03250 PF01872 RibD C-terminal domain L2227_03250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L2227_03260 PF00834 Ribulose-phosphate 3 epimerase family L2227_03265 PF13717 zinc-ribbon domain L2227_03270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal L2227_03270 PF14602 Hexapeptide repeat of succinyl-transferase L2227_03270 PF00132 Bacterial transferase hexapeptide (six repeats) L2227_03305 PF02245 Methylpurine-DNA glycosylase (MPG) L2227_03310 PF13537 Glutamine amidotransferase domain L2227_03310 PF00156 Phosphoribosyl transferase domain L2227_03315 PF01098 Cell cycle protein L2227_03320 PF00361 Proton-conducting membrane transporter L2227_03340 PF01351 Ribonuclease HII L2227_03345 PF00953 Glycosyl transferase family 4 L2227_03350 PF03232 Ubiquinone biosynthesis protein COQ7 L2227_03360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal L2227_03360 PF01926 50S ribosome-binding GTPase L2227_03410 PF00677 Lumazine binding domain L2227_03420 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain L2227_03420 PF01409 tRNA synthetases class II core domain (F) L2227_03425 PF00132 Bacterial transferase hexapeptide (six repeats) L2227_03425 PF14602 Hexapeptide repeat of succinyl-transferase L2227_03425 PF12804 MobA-like NTP transferase domain L2227_03430 PF00829 Ribosomal prokaryotic L21 protein L2227_03435 PF01016 Ribosomal L27 protein L2227_03445 PF00438 S-adenosylmethionine synthetase, N-terminal domain L2227_03445 PF02773 S-adenosylmethionine synthetase, C-terminal domain L2227_03445 PF02772 S-adenosylmethionine synthetase, central domain L2227_03455 PF03070 TENA/THI-4/PQQC family L2227_03465 PF00510 Cytochrome c oxidase subunit III L2227_03470 PF02075 Crossover junction endodeoxyribonuclease RuvC L2227_03475 PF03652 Holliday junction resolvase L2227_03495 PF02934 GatB/GatE catalytic domain L2227_03495 PF02637 GatB domain L2227_03505 PF09190 DALR domain L2227_03505 PF01406 tRNA synthetases class I (C) catalytic domain L2227_03515 PF02416 mttA/Hcf106 family L2227_03520 PF00005 ABC transporter L2227_03520 PF08402 TOBE domain L2227_03530 PF01541 GIY-YIG catalytic domain L2227_03530 PF02151 UvrB/uvrC motif L2227_03530 PF08459 UvrC Helix-hairpin-helix N-terminal L2227_03535 PF02092 Glycyl-tRNA synthetase beta subunit L2227_03535 PF05746 DALR anticodon binding domain L2227_03540 PF02091 Glycyl-tRNA synthetase alpha subunit L2227_03550 PF00490 Delta-aminolevulinic acid dehydratase L2227_03555 PF00146 NADH dehydrogenase L2227_03560 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L2227_03560 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal L2227_03560 PF00384 Molybdopterin oxidoreductase L2227_03575 PF03167 Uracil DNA glycosylase superfamily L2227_03580 PF01327 Polypeptide deformylase L2227_03585 PF02491 SHS2 domain inserted in FTSA L2227_03590 PF00557 Metallopeptidase family M24 L2227_03595 PF00083 Sugar (and other) transporter L2227_03595 PF07690 Major Facilitator Superfamily L2227_03600 PF01795 MraW methylase family L2227_03615 PF01386 Ribosomal L25p family L2227_03615 PF14693 Ribosomal protein TL5, C-terminal domain L2227_03620 PF01195 Peptidyl-tRNA hydrolase L2227_03630 PF01494 FAD binding domain L2227_03640 PF10609 NUBPL iron-transfer P-loop NTPase L2227_03670 PF07499 RuvA, C-terminal domain L2227_03670 PF01330 RuvA N terminal domain L2227_03675 PF17864 RuvB AAA lid domain L2227_03675 PF05491 RuvB C-terminal winged helix domain L2227_03675 PF05496 Holliday junction DNA helicase RuvB P-loop domain L2227_03715 PF00271 Helicase conserved C-terminal domain L2227_03715 PF04851 Type III restriction enzyme, res subunit L2227_03715 PF02151 UvrB/uvrC motif L2227_03715 PF12344 Ultra-violet resistance protein B L2227_03715 PF17757 UvrB interaction domain L2227_03745 PF13180 PDZ domain L2227_03750 PF01145 SPFH domain / Band 7 family L2227_03755 PF01145 SPFH domain / Band 7 family L2227_03835 PF17761 DUF1016 N-terminal domain L2227_03835 PF06250 YhcG PDDEXK nuclease domain L2227_03890 PF07508 Recombinase L2227_03890 PF13408 Recombinase zinc beta ribbon domain L2227_03890 PF00239 Resolvase, N terminal domain L2227_03945 PF04984 Phage tail sheath protein subtilisin-like domain L2227_03945 PF17482 Phage tail sheath C-terminal domain L2227_03990 PF01734 Patatin-like phospholipase L2227_03995 PF12255 Insecticide toxin TcdB middle/C-terminal region L2227_03995 PF03534 Salmonella virulence plasmid 65kDa B protein L2227_03995 PF12256 Insecticide toxin TcdB middle/N-terminal region L2227_04005 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain L2227_04005 PF18413 Neuraminidase-like domain L2227_04005 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain L2227_04005 PF18413 Neuraminidase-like domain L2227_04050 PF04002 RadC-like JAB domain L2227_04085 PF00271 Helicase conserved C-terminal domain L2227_04085 PF00270 DEAD/DEAH box helicase L2227_04085 PF17191 RecG wedge domain L2227_04105 PF01300 Telomere recombination L2227_04125 PF13244 Domain of unknown function (DUF4040) L2227_04125 PF00361 Proton-conducting membrane transporter L2227_04125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L2227_04135 PF01648 4'-phosphopantetheinyl transferase superfamily L2227_04140 PF03129 Anticodon binding domain L2227_04140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2227_04165 PF01609 Transposase DDE domain L2227_04200 PF04002 RadC-like JAB domain L2227_04205 PF01522 Polysaccharide deacetylase L2227_04205 PF00457 Glycosyl hydrolases family 11 L2227_04205 PF03422 Carbohydrate binding module (family 6) L2227_04210 PF00905 Penicillin binding protein transpeptidase domain L2227_04210 PF03717 Penicillin-binding Protein dimerisation domain L2227_04235 PF02779 Transketolase, pyrimidine binding domain L2227_04235 PF16078 2-oxoglutarate dehydrogenase N-terminus L2227_04235 PF00676 Dehydrogenase E1 component L2227_04235 PF16870 2-oxoglutarate dehydrogenase C-terminal L2227_04245 PF00731 AIR carboxylase L2227_04260 PF01192 RNA polymerase Rpb6 L2227_04270 PF03334 Na+/H+ antiporter subunit L2227_04285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L2227_04290 PF04545 Sigma-70, region 4 L2227_04290 PF04539 Sigma-70 region 3 L2227_04290 PF04546 Sigma-70, non-essential region L2227_04290 PF04542 Sigma-70 region 2 L2227_04290 PF00140 Sigma-70 factor, region 1.2 L2227_04290 PF03979 Sigma-70 factor, region 1.1 L2227_04315 PF02142 MGS-like domain L2227_04315 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain L2227_04315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2227_04330 PF03631 Virulence factor BrkB L2227_04340 PF02463 RecF/RecN/SMC N terminal domain L2227_04345 PF00578 AhpC/TSA family L2227_04350 PF00512 His Kinase A (phospho-acceptor) domain L2227_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2227_04350 PF00989 PAS fold L2227_04355 PF00202 Aminotransferase class-III L2227_04360 PF05239 PRC-barrel domain L2227_04360 PF01782 RimM N-terminal domain L2227_04365 PF08207 Elongation factor P (EF-P) KOW-like domain L2227_04365 PF09285 Elongation factor P, C-terminal L2227_04365 PF01132 Elongation factor P (EF-P) OB domain L2227_04375 PF00155 Aminotransferase class I and II L2227_04385 PF00183 Hsp90 protein L2227_04395 PF02401 LytB protein L2227_04400 PF00905 Penicillin binding protein transpeptidase domain L2227_04400 PF03717 Penicillin-binding Protein dimerisation domain L2227_04425 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_04430 PF09312 SurA N-terminal domain L2227_04430 PF00639 PPIC-type PPIASE domain L2227_04440 PF00719 Inorganic pyrophosphatase L2227_04465 PF00691 OmpA family L2227_04470 PF01171 PP-loop family L2227_04475 PF00004 ATPase family associated with various cellular activities (AAA) L2227_04475 PF06480 FtsH Extracellular L2227_04475 PF01434 Peptidase family M41 L2227_04475 PF17862 AAA+ lid domain L2227_04485 PF02223 Thymidylate kinase L2227_04495 PF00999 Sodium/hydrogen exchanger family L2227_04495 PF02254 TrkA-N domain L2227_04505 PF02104 SURF1 family L2227_04510 PF00210 Ferritin-like domain L2227_04530 PF13091 PLD-like domain L2227_04545 PF14622 Ribonuclease-III-like L2227_04545 PF00035 Double-stranded RNA binding motif L2227_04550 PF01180 Dihydroorotate dehydrogenase L2227_04560 PF01791 DeoC/LacD family aldolase L2227_04565 PF10431 C-terminal, D2-small domain, of ClpB protein L2227_04565 PF07724 AAA domain (Cdc48 subfamily) L2227_04565 PF17871 AAA lid domain L2227_04565 PF00004 ATPase family associated with various cellular activities (AAA) L2227_04565 PF02861 Clp amino terminal domain, pathogenicity island component L2227_04570 PF00270 DEAD/DEAH box helicase L2227_04570 PF00271 Helicase conserved C-terminal domain L2227_04575 PF00313 'Cold-shock' DNA-binding domain L2227_04580 PF01523 Putative modulator of DNA gyrase L2227_04585 PF00231 ATP synthase L2227_04600 PF02687 FtsX-like permease family L2227_04600 PF12704 MacB-like periplasmic core domain L2227_04625 PF14572 Phosphoribosyl synthetase-associated domain L2227_04625 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase L2227_04630 PF02686 Glu-tRNAGln amidotransferase C subunit L2227_04635 PF04052 TolB amino-terminal domain L2227_04635 PF07676 WD40-like Beta Propeller Repeat L2227_04640 PF12706 Beta-lactamase superfamily domain L2227_04640 PF17770 Ribonuclease J C-terminal domain L2227_04640 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain L2227_04645 PF00226 DnaJ domain L2227_04645 PF01556 DnaJ C terminal domain L2227_04645 PF00684 DnaJ central domain L2227_04680 PF00883 Cytosol aminopeptidase family, catalytic domain L2227_04680 PF02789 Cytosol aminopeptidase family, N-terminal domain L2227_04700 PF00216 Bacterial DNA-binding protein L2227_04710 PF01551 Peptidase family M23 L2227_04715 PF08264 Anticodon-binding domain of tRNA L2227_04715 PF00133 tRNA synthetases class I (I, L, M and V) L2227_04715 PF13603 Leucyl-tRNA synthetase, Domain 2 L2227_04715 PF09334 tRNA synthetases class I (M) L2227_04730 PF00665 Integrase core domain L2227_04730 PF13276 HTH-like domain L2227_04730 PF13333 Integrase core domain L2227_04735 PF00665 Integrase core domain L2227_04735 PF13333 Integrase core domain L2227_04735 PF13276 HTH-like domain L2227_04750 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ L2227_04760 PF00380 Ribosomal protein S9/S16 L2227_04765 PF00572 Ribosomal protein L13 L2227_04775 PF10691 Protein of unknown function (DUF2497) L2227_04780 PF01728 FtsJ-like methyltransferase L2227_04830 PF02355 Protein export membrane protein L2227_04845 PF00571 CBS domain L2227_04845 PF00478 IMP dehydrogenase / GMP reductase domain L2227_04855 PF00398 Ribosomal RNA adenine dimethylase L2227_04865 PF00121 Triosephosphate isomerase L2227_04870 PF02481 DNA recombination-mediator protein A L2227_04870 PF17782 DprA winged helix domain L2227_04875 PF11953 Domain of unknown function (DUF3470) L2227_04875 PF00037 4Fe-4S binding domain L2227_04895 PF07478 D-ala D-ala ligase C-terminus L2227_04895 PF01820 D-ala D-ala ligase N-terminus L2227_04900 PF03799 Cell division protein FtsQ L2227_04900 PF08478 POTRA domain, FtsQ-type L2227_04905 PF00768 D-alanyl-D-alanine carboxypeptidase L2227_04905 PF07943 Penicillin-binding protein 5, C-terminal domain L2227_04910 PF00893 Small Multidrug Resistance protein L2227_04915 PF00893 Small Multidrug Resistance protein L2227_04940 PF00285 Citrate synthase, C-terminal domain L2227_04945 PF01649 Ribosomal protein S20 L2227_04955 PF02899 Phage integrase, N-terminal SAM-like domain L2227_04955 PF00589 Phage integrase family L2227_04965 PF01594 AI-2E family transporter L2227_04970 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L2227_04970 PF02542 YgbB family L2227_04975 PF02222 ATP-grasp domain L2227_04975 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain L2227_04980 PF04379 ApaG domain L2227_04995 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_05005 PF00528 Binding-protein-dependent transport system inner membrane component L2227_05010 PF00581 Rhodanese-like domain L2227_05010 PF17773 UPF0176 acylphosphatase like domain L2227_05025 PF13368 Topoisomerase C-terminal repeat L2227_05025 PF01396 Topoisomerase DNA binding C4 zinc finger L2227_05025 PF01751 Toprim domain L2227_05025 PF01131 DNA topoisomerase L2227_05040 PF01370 NAD dependent epimerase/dehydratase family L2227_05040 PF08338 Domain of unknown function (DUF1731) L2227_05045 PF02875 Mur ligase family, glutamate ligase domain L2227_05045 PF01225 Mur ligase family, catalytic domain L2227_05045 PF08245 Mur ligase middle domain L2227_05060 PF01230 HIT domain L2227_05065 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 L2227_05070 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L2227_05075 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit L2227_05080 PF00056 lactate/malate dehydrogenase, NAD binding domain L2227_05080 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain L2227_05085 PF01026 TatD related DNase L2227_05090 PF00293 NUDIX domain L2227_05110 PF00579 tRNA synthetases class I (W and Y) L2227_05130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L2227_05130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L2227_05135 PF10502 Signal peptidase, peptidase S26 L2227_05145 PF00226 DnaJ domain L2227_05145 PF07743 HSCB C-terminal oligomerisation domain L2227_05150 PF01521 Iron-sulphur cluster biosynthesis L2227_05155 PF01592 NifU-like N terminal domain L2227_05160 PF00448 SRP54-type protein, GTPase domain L2227_05160 PF02881 SRP54-type protein, helical bundle domain L2227_05165 PF18073 Rubredoxin metal binding domain L2227_05180 PF00186 Dihydrofolate reductase L2227_05185 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) L2227_05185 PF00809 Pterin binding enzyme L2227_05195 PF03070 TENA/THI-4/PQQC family L2227_05205 PF00085 Thioredoxin L2227_05240 PF02575 YbaB/EbfC DNA-binding family L2227_05245 PF12169 DNA polymerase III subunits gamma and tau domain III L2227_05275 PF13462 Thioredoxin L2227_05280 PF03364 Polyketide cyclase / dehydrase and lipid transport L2227_05295 PF08245 Mur ligase middle domain L2227_05295 PF02875 Mur ligase family, glutamate ligase domain L2227_05310 PF00154 recA bacterial DNA recombination protein L2227_05315 PF02666 Phosphatidylserine decarboxylase L2227_05320 PF01066 CDP-alcohol phosphatidyltransferase L2227_05325 PF01235 Sodium:alanine symporter family L2227_05330 PF01235 Sodium:alanine symporter family L2227_05335 PF02660 Glycerol-3-phosphate acyltransferase L2227_05345 PF01545 Cation efflux family L2227_05360 PF00464 Serine hydroxymethyltransferase L2227_05385 PF00155 Aminotransferase class I and II L2227_05390 PF01208 Uroporphyrinogen decarboxylase (URO-D) L2227_05395 PF00571 CBS domain L2227_05395 PF03471 Transporter associated domain L2227_05410 PF00586 AIR synthase related protein, N-terminal domain L2227_05410 PF02769 AIR synthase related protein, C-terminal domain L2227_05415 PF01259 SAICAR synthetase L2227_05420 PF01746 tRNA (Guanine-1)-methyltransferase L2227_05425 PF01245 Ribosomal protein L19 L2227_05435 PF00528 Binding-protein-dependent transport system inner membrane component L2227_05445 PF02016 LD-carboxypeptidase N-terminal domain L2227_05445 PF17676 LD-carboxypeptidase C-terminal domain L2227_05450 PF03099 Biotin/lipoate A/B protein ligase family L2227_05455 PF04860 Phage portal protein L2227_05465 PF03023 Lipid II flippase MurJ L2227_05475 PF13932 GidA associated domain L2227_05475 PF01134 Glucose inhibited division protein A L2227_05480 PF00557 Metallopeptidase family M24 L2227_05480 PF01321 Creatinase/Prolidase N-terminal domain L2227_05510 PF13276 HTH-like domain L2227_05510 PF00665 Integrase core domain L2227_05510 PF13333 Integrase core domain L2227_05515 PF13276 HTH-like domain L2227_05515 PF00665 Integrase core domain L2227_05515 PF13333 Integrase core domain L2227_05520 PF01367 5'-3' exonuclease, C-terminal SAM fold L2227_05520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L2227_05520 PF00476 DNA polymerase family A L2227_05550 PF01523 Putative modulator of DNA gyrase L2227_05560 PF00266 Aminotransferase class-V L2227_05570 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain L2227_05570 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase L2227_05570 PF13288 DXP reductoisomerase C-terminal domain L2227_05580 PF00005 ABC transporter L2227_05585 PF02405 Permease MlaE L2227_05590 PF01783 Ribosomal L32p protein family L2227_05595 PF02504 Fatty acid synthesis protein L2227_05600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L2227_05600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L2227_05605 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_05615 PF01926 50S ribosome-binding GTPase L2227_05615 PF12631 MnmE helical domain L2227_05615 PF10396 GTP-binding protein TrmE N-terminus L2227_05620 PF12838 4Fe-4S dicluster domain L2227_05630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2227_05630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L2227_05630 PF03129 Anticodon binding domain L2227_05635 PF05198 Translation initiation factor IF-3, N-terminal domain L2227_05635 PF00707 Translation initiation factor IF-3, C-terminal domain L2227_05640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region L2227_05640 PF10531 SLBB domain L2227_05640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit L2227_05665 PF03100 CcmE L2227_05675 PF03099 Biotin/lipoate A/B protein ligase family L2227_05675 PF08279 HTH domain L2227_05675 PF02237 Biotin protein ligase C terminal domain L2227_05675 PF03099 Biotin/lipoate A/B protein ligase family L2227_05675 PF08279 HTH domain L2227_05675 PF02237 Biotin protein ligase C terminal domain L2227_05680 PF00361 Proton-conducting membrane transporter L2227_05685 PF00361 Proton-conducting membrane transporter L2227_05690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L2227_05690 PF00361 Proton-conducting membrane transporter L2227_05695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L2227_05700 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 L2227_05705 PF00580 UvrD/REP helicase N-terminal domain L2227_05705 PF13361 UvrD-like helicase C-terminal domain L2227_05720 PF00696 Amino acid kinase family L2227_05720 PF01842 ACT domain L2227_05720 PF13840 ACT domain L2227_05740 PF13520 Amino acid permease L2227_05790 PF01381 Helix-turn-helix L2227_05800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) L2227_05850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE L2227_05850 PF17854 FtsK alpha domain L2227_05850 PF01580 FtsK/SpoIIIE family L2227_05850 PF09397 Ftsk gamma domain L2227_05855 PF02325 YGGT family L2227_05875 PF00334 Nucleoside diphosphate kinase L2227_05885 PF00762 Ferrochelatase L2227_05900 PF00227 Proteasome subunit L2227_05905 PF00004 ATPase family associated with various cellular activities (AAA) L2227_05905 PF07724 AAA domain (Cdc48 subfamily) L2227_05905 PF10431 C-terminal, D2-small domain, of ClpB protein L2227_05915 PF00348 Polyprenyl synthetase L2227_05920 PF00550 Phosphopantetheine attachment site L2227_05925 PF00109 Beta-ketoacyl synthase, N-terminal domain L2227_05925 PF02801 Beta-ketoacyl synthase, C-terminal domain L2227_05940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L2227_05945 PF02511 Thymidylate synthase complementing protein L2227_05955 PF17764 3′ DNA-binding domain (3′BD) L2227_05955 PF18074 Primosomal protein N C-terminal domain L2227_05955 PF18319 PriA DNA helicase Cys-rich region (CRR) domain L2227_05955 PF00271 Helicase conserved C-terminal domain L2227_05955 PF00270 DEAD/DEAH box helicase L2227_05960 PF00355 Rieske [2Fe-2S] domain L2227_05960 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal L2227_05965 PF03989 DNA gyrase C-terminal domain, beta-propeller L2227_05965 PF00521 DNA gyrase/topoisomerase IV, subunit A L2227_05985 PF02632 BioY family L2227_05990 PF00881 Nitroreductase family L2227_05995 PF01678 Diaminopimelate epimerase L2227_06000 PF02629 CoA binding domain L2227_06000 PF00549 CoA-ligase L2227_06005 PF00549 CoA-ligase L2227_06005 PF08442 ATP-grasp domain L2227_06020 PF04452 RNA methyltransferase L2227_06055 PF01751 Toprim domain L2227_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2227_06055 PF00986 DNA gyrase B subunit, carboxyl terminus L2227_06055 PF00204 DNA gyrase B L2227_06060 PF02630 SCO1/SenC L2227_06065 PF00929 Exonuclease L2227_06075 PF02556 Preprotein translocase subunit SecB L2227_06080 PF00694 Aconitase C-terminal domain L2227_06080 PF00330 Aconitase family (aconitate hydratase) L2227_06085 PF00171 Aldehyde dehydrogenase family L2227_06085 PF18327 Proline utilization A proline dehydrogenase N-terminal domain L2227_06085 PF14850 DNA-binding domain of Proline dehydrogenase L2227_06085 PF01619 Proline dehydrogenase L2227_06105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain L2227_06105 PF02769 AIR synthase related protein, C-terminal domain L2227_06105 PF00586 AIR synthase related protein, N-terminal domain L2227_06120 PF17760 UvrA interaction domain L2227_06120 PF17755 UvrA DNA-binding domain L2227_06145 PF08245 Mur ligase middle domain L2227_06145 PF02875 Mur ligase family, glutamate ligase domain L2227_06150 PF01053 Cys/Met metabolism PLP-dependent enzyme L2227_06160 PF00012 Hsp70 protein L2227_06165 PF00575 S1 RNA binding domain L2227_06165 PF10150 Ribonuclease E/G family L2227_06165 PF12111 Polyribonucleotide phosphorylase C terminal L2227_06170 PF00471 Ribosomal protein L33 L2227_06180 PF01297 Zinc-uptake complex component A periplasmic L2227_06185 PF00005 ABC transporter L2227_06190 PF03109 ABC1 family L2227_06195 PF01548 Transposase L2227_06195 PF02371 Transposase IS116/IS110/IS902 family L2227_06235 PF01039 Carboxyl transferase domain L2227_06245 PF06827 Zinc finger found in FPG and IleRS L2227_06245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain L2227_06245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain L2227_06250 PF01243 Pyridoxamine 5'-phosphate oxidase L2227_06250 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region L2227_06260 PF00753 Metallo-beta-lactamase superfamily L2227_06260 PF03772 Competence protein L2227_06270 PF00849 RNA pseudouridylate synthase L2227_06285 PF00162 Phosphoglycerate kinase L2227_06295 PF03060 Nitronate monooxygenase L2227_06310 PF03135 CagE, TrbE, VirB family, component of type IV transporter system L2227_06330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L2227_06330 PF02817 e3 binding domain L2227_06330 PF00364 Biotin-requiring enzyme L2227_06345 PF02132 RecR protein L2227_06345 PF13662 Toprim domain L2227_06360 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain L2227_06360 PF01138 3' exoribonuclease family, domain 1 L2227_06360 PF03725 3' exoribonuclease family, domain 2 L2227_06360 PF00575 S1 RNA binding domain L2227_06360 PF00013 KH domain L2227_06365 PF00312 Ribosomal protein S15 L2227_06370 PF16198 tRNA pseudouridylate synthase B C-terminal domain L2227_06370 PF01509 TruB family pseudouridylate synthase (N terminal domain) L2227_06380 PF01548 Transposase L2227_06380 PF02371 Transposase IS116/IS110/IS902 family L2227_06405 PF01548 Transposase L2227_06405 PF02371 Transposase IS116/IS110/IS902 family L2227_06420 PF00107 Zinc-binding dehydrogenase L2227_06420 PF08240 Alcohol dehydrogenase GroES-like domain L2227_06425 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 L2227_06430 PF01027 Inhibitor of apoptosis-promoting Bax1 L2227_06435 PF08032 RNA 2'-O ribose methyltransferase substrate binding L2227_06435 PF00588 SpoU rRNA Methylase family L2227_06465 PF01118 Semialdehyde dehydrogenase, NAD binding domain L2227_06465 PF02774 Semialdehyde dehydrogenase, dimerisation domain L2227_06535 PF17482 Phage tail sheath C-terminal domain L2227_06535 PF04984 Phage tail sheath protein subtilisin-like domain L2227_06625 PF01555 DNA methylase L2227_06625 PF18755 Restriction Enzyme Adenine Methylase Associated L2227_06705 PF07508 Recombinase L2227_06705 PF00239 Resolvase, N terminal domain L2227_06705 PF13408 Recombinase zinc beta ribbon domain L2227_06775 PF04551 GcpE protein L2227_06815 PF02843 Phosphoribosylglycinamide synthetase, C domain L2227_06815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain L2227_06815 PF02844 Phosphoribosylglycinamide synthetase, N domain L2227_06820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2227_06820 PF02403 Seryl-tRNA synthetase N-terminal domain L2227_06830 PF01207 Dihydrouridine synthase (Dus) L2227_06835 PF04997 RNA polymerase Rpb1, domain 1 L2227_06835 PF00623 RNA polymerase Rpb1, domain 2 L2227_06835 PF04983 RNA polymerase Rpb1, domain 3 L2227_06835 PF04998 RNA polymerase Rpb1, domain 5 L2227_06835 PF04561 RNA polymerase Rpb2, domain 2 L2227_06835 PF04565 RNA polymerase Rpb2, domain 3 L2227_06835 PF10385 RNA polymerase beta subunit external 1 domain L2227_06835 PF00562 RNA polymerase Rpb2, domain 6 L2227_06835 PF04560 RNA polymerase Rpb2, domain 7 L2227_06835 PF04563 RNA polymerase beta subunit L2227_06835 PF05000 RNA polymerase Rpb1, domain 4 L2227_06840 PF16320 Ribosomal protein L7/L12 dimerisation domain L2227_06840 PF00542 Ribosomal protein L7/L12 C-terminal domain L2227_06845 PF00466 Ribosomal protein L10 L2227_06850 PF00687 Ribosomal protein L1p/L10e family L2227_06855 PF03946 Ribosomal protein L11, N-terminal domain L2227_06855 PF00298 Ribosomal protein L11, RNA binding domain L2227_06860 PF02357 Transcription termination factor nusG L2227_06860 PF00467 KOW motif L2227_06875 PF03143 Elongation factor Tu C-terminal domain L2227_06875 PF00009 Elongation factor Tu GTP binding domain L2227_06875 PF03144 Elongation factor Tu domain 2 L2227_06880 PF00679 Elongation factor G C-terminus L2227_06880 PF14492 Elongation Factor G, domain II L2227_06880 PF03764 Elongation factor G, domain IV L2227_06880 PF03144 Elongation factor Tu domain 2 L2227_06880 PF00009 Elongation factor Tu GTP binding domain L2227_06885 PF00177 Ribosomal protein S7p/S5e L2227_06890 PF00164 Ribosomal protein S12/S23 L2227_06895 PF13847 Methyltransferase domain L2227_06895 PF17827 PrmC N-terminal domain L2227_06905 PF02534 Type IV secretory system Conjugative DNA transfer L2227_06910 PF00437 Type II/IV secretion system protein L2227_06925 PF04335 VirB8 protein L2227_06930 PF00925 GTP cyclohydrolase II L2227_06945 PF00308 Bacterial dnaA protein L2227_06945 PF11638 DnaA N-terminal domain L2227_06945 PF08299 Bacterial dnaA protein helix-turn-helix L2227_06955 PF00120 Glutamine synthetase, catalytic domain L2227_06965 PF00873 AcrB/AcrD/AcrF family L2227_06970 PF13184 NusA-like KH domain L2227_06970 PF08529 NusA N-terminal domain L2227_06970 PF00575 S1 RNA binding domain L2227_06975 PF04760 Translation initiation factor IF-2, N-terminal region L2227_06975 PF11987 Translation-initiation factor 2 L2227_06975 PF00009 Elongation factor Tu GTP binding domain L2227_06980 PF02033 Ribosome-binding factor A L2227_06985 PF01040 UbiA prenyltransferase family L2227_06990 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase L2227_07025 PF01218 Coproporphyrinogen III oxidase L2227_07030 PF13188 PAS domain L2227_07030 PF08448 PAS fold L2227_07030 PF00512 His Kinase A (phospho-acceptor) domain L2227_07030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2227_07030 PF00072 Response regulator receiver domain L2227_07035 PF13614 AAA domain L2227_07040 PF17762 HTH domain found in ParB protein L2227_07040 PF02195 ParB-like nuclease domain L2227_07055 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L2227_07060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L2227_07070 PF00483 Nucleotidyl transferase L2227_07070 PF01050 Mannose-6-phosphate isomerase L2227_07100 PF13333 Integrase core domain L2227_07100 PF13276 HTH-like domain L2227_07100 PF00665 Integrase core domain L2227_07105 PF13333 Integrase core domain L2227_07105 PF00665 Integrase core domain L2227_07105 PF13276 HTH-like domain L2227_07125 PF13333 Integrase core domain L2227_07125 PF00665 Integrase core domain L2227_07125 PF13276 HTH-like domain L2227_07130 PF13333 Integrase core domain L2227_07130 PF00665 Integrase core domain L2227_07130 PF13276 HTH-like domain L2227_07145 PF08264 Anticodon-binding domain of tRNA L2227_07145 PF00133 tRNA synthetases class I (I, L, M and V) L2227_07150 PF01121 Dephospho-CoA kinase L2227_07155 PF01612 3'-5' exonuclease L2227_07155 PF00570 HRDC domain L2227_07165 PF05190 MutS family domain IV L2227_07165 PF01624 MutS domain I L2227_07165 PF05188 MutS domain II L2227_07165 PF05192 MutS domain III L2227_07165 PF00488 MutS domain V L2227_07180 PF00571 CBS domain L2227_07180 PF03471 Transporter associated domain L2227_07180 PF03741 Integral membrane protein TerC family L2227_07185 PF02540 NAD synthase L2227_07185 PF00117 Glutamine amidotransferase class-I L2227_07185 PF00958 GMP synthase C terminal domain L2227_07190 PF00317 Ribonucleotide reductase, all-alpha domain L2227_07190 PF03477 ATP cone domain L2227_07190 PF02867 Ribonucleotide reductase, barrel domain L2227_07195 PF01209 ubiE/COQ5 methyltransferase family L2227_07225 PF00468 Ribosomal protein L34 L2227_07230 PF00528 Binding-protein-dependent transport system inner membrane component L2227_07235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2227_07235 PF02874 ATP synthase alpha/beta family, beta-barrel domain L2227_07240 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain L2227_07255 PF07690 Major Facilitator Superfamily L2227_07275 PF03462 PCRF domain L2227_07275 PF00472 RF-1 domain L2227_07280 PF01926 50S ribosome-binding GTPase L2227_07285 PF00696 Amino acid kinase family L2227_07290 PF00692 dUTPase L2227_07300 PF01609 Transposase DDE domain L2227_07325 PF00034 Cytochrome c L2227_07335 PF00579 tRNA synthetases class I (W and Y) L2227_07340 PF01025 GrpE L2227_07345 PF00348 Polyprenyl synthetase L2227_07350 PF00886 Ribosomal protein S16 L2227_07355 PF00639 PPIC-type PPIASE domain L2227_07365 PF07498 Rho termination factor, N-terminal domain L2227_07365 PF07497 Rho termination factor, RNA-binding domain L2227_07365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2227_07380 PF00180 Isocitrate/isopropylmalate dehydrogenase L2227_07380 PF18324 Hypothetical protein TT1725 L2227_07385 PF10576 Iron-sulfur binding domain of endonuclease III L2227_07385 PF00633 Helix-hairpin-helix motif L2227_07385 PF00730 HhH-GPD superfamily base excision DNA repair protein L2227_07390 PF07687 Peptidase dimerisation domain L2227_07390 PF01546 Peptidase family M20/M25/M40 L2227_07395 PF13685 Iron-containing alcohol dehydrogenase L2227_07405 PF00206 Lyase L2227_07405 PF10397 Adenylosuccinate lyase C-terminus L2227_07415 PF03948 Ribosomal protein L9, C-terminal domain L2227_07415 PF01281 Ribosomal protein L9, N-terminal domain L2227_07420 PF01084 Ribosomal protein S18 L2227_07425 PF01250 Ribosomal protein S6 L2227_07430 PF07733 Bacterial DNA polymerase III alpha NTPase domain L2227_07430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L2227_07430 PF14579 Helix-hairpin-helix motif L2227_07430 PF02811 PHP domain L2227_07435 PF00749 tRNA synthetases class I (E and Q), catalytic domain L2227_07440 PF12826 Helix-hairpin-helix motif L2227_07440 PF03119 NAD-dependent DNA ligase C4 zinc finger domain L2227_07440 PF03120 NAD-dependent DNA ligase OB-fold domain L2227_07440 PF01653 NAD-dependent DNA ligase adenylation domain L2227_07440 PF00533 BRCA1 C Terminus (BRCT) domain L2227_07445 PF00701 Dihydrodipicolinate synthetase family L2227_07450 PF00436 Single-strand binding protein family L2227_07475 PF00664 ABC transporter transmembrane region L2227_07475 PF00005 ABC transporter L2227_07480 PF01790 Prolipoprotein diacylglyceryl transferase L2227_07485 PF01668 SmpB protein L2227_07505 PF00551 Formyl transferase L2227_07515 PF05193 Peptidase M16 inactive domain L2227_07515 PF00675 Insulinase (Peptidase family M16) L2227_07520 PF01252 Signal peptidase (SPase) II L2227_07525 PF06574 FAD synthetase L2227_07525 PF01687 Riboflavin kinase L2227_07530 PF00462 Glutaredoxin L2227_07540 PF10417 C-terminal domain of 1-Cys peroxiredoxin L2227_07540 PF00578 AhpC/TSA family L2227_07545 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_07555 PF00589 Phage integrase family L2227_07555 PF02899 Phage integrase, N-terminal SAM-like domain L2227_07560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2227_07560 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2227_07600 PF07650 KH domain L2227_07600 PF01926 50S ribosome-binding GTPase L2227_07605 PF02322 Cytochrome bd terminal oxidase subunit II L2227_07610 PF01654 Cytochrome bd terminal oxidase subunit I L2227_07615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L2227_07615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L2227_07620 PF00675 Insulinase (Peptidase family M16) L2227_07620 PF05193 Peptidase M16 inactive domain L2227_07630 PF01702 Queuine tRNA-ribosyltransferase L2227_07650 PF00486 Transcriptional regulatory protein, C terminal L2227_07650 PF00072 Response regulator receiver domain L2227_07655 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus L2227_07655 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus L2227_07660 PF04608 Phosphatidylglycerophosphatase A L2227_07675 PF13085 2Fe-2S iron-sulfur cluster binding domain L2227_07680 PF02130 Uncharacterized protein family UPF0054 L2227_07695 PF12327 FtsZ family, C-terminal domain L2227_07695 PF00091 Tubulin/FtsZ family, GTPase domain L2227_07705 PF01078 Magnesium chelatase, subunit ChlI L2227_07705 PF13335 Magnesium chelatase, subunit ChlI C-terminal