locus-tag class description J4T77_00005 PF00308 Bacterial dnaA protein J4T77_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4T77_00005 PF11638 DnaA N-terminal domain J4T77_00020 PF00925 GTP cyclohydrolase II J4T77_00025 PF04335 VirB8 protein J4T77_00040 PF00437 Type II/IV secretion system protein J4T77_00045 PF02534 Type IV secretory system Conjugative DNA transfer J4T77_00055 PF13847 Methyltransferase domain J4T77_00055 PF17827 PrmC N-terminal domain J4T77_00065 PF00164 Ribosomal protein S12/S23 J4T77_00070 PF00177 Ribosomal protein S7p/S5e J4T77_00075 PF03144 Elongation factor Tu domain 2 J4T77_00075 PF03764 Elongation factor G, domain IV J4T77_00075 PF00009 Elongation factor Tu GTP binding domain J4T77_00075 PF00679 Elongation factor G C-terminus J4T77_00075 PF14492 Elongation Factor G, domain II J4T77_00095 PF00467 KOW motif J4T77_00095 PF02357 Transcription termination factor nusG J4T77_00100 PF00298 Ribosomal protein L11, RNA binding domain J4T77_00100 PF03946 Ribosomal protein L11, N-terminal domain J4T77_00105 PF00687 Ribosomal protein L1p/L10e family J4T77_00110 PF00466 Ribosomal protein L10 J4T77_00115 PF00542 Ribosomal protein L7/L12 C-terminal domain J4T77_00115 PF16320 Ribosomal protein L7/L12 dimerisation domain J4T77_00120 PF04561 RNA polymerase Rpb2, domain 2 J4T77_00120 PF04560 RNA polymerase Rpb2, domain 7 J4T77_00120 PF10385 RNA polymerase beta subunit external 1 domain J4T77_00120 PF04565 RNA polymerase Rpb2, domain 3 J4T77_00120 PF04563 RNA polymerase beta subunit J4T77_00120 PF00562 RNA polymerase Rpb2, domain 6 J4T77_00120 PF05000 RNA polymerase Rpb1, domain 4 J4T77_00120 PF04983 RNA polymerase Rpb1, domain 3 J4T77_00120 PF00623 RNA polymerase Rpb1, domain 2 J4T77_00120 PF04998 RNA polymerase Rpb1, domain 5 J4T77_00120 PF04997 RNA polymerase Rpb1, domain 1 J4T77_00125 PF01207 Dihydrouridine synthase (Dus) J4T77_00135 PF02403 Seryl-tRNA synthetase N-terminal domain J4T77_00135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4T77_00140 PF02844 Phosphoribosylglycinamide synthetase, N domain J4T77_00140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4T77_00140 PF02843 Phosphoribosylglycinamide synthetase, C domain J4T77_00150 PF01348 Type II intron maturase J4T77_00150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J4T77_00165 PF14572 Phosphoribosyl synthetase-associated domain J4T77_00165 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4T77_00170 PF02686 Glu-tRNAGln amidotransferase C subunit J4T77_00175 PF04052 TolB amino-terminal domain J4T77_00175 PF07676 WD40-like Beta Propeller Repeat J4T77_00180 PF12706 Beta-lactamase superfamily domain J4T77_00180 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4T77_00180 PF17770 Ribonuclease J C-terminal domain J4T77_00185 PF00226 DnaJ domain J4T77_00185 PF01556 DnaJ C terminal domain J4T77_00185 PF00684 DnaJ central domain J4T77_00250 PF02789 Cytosol aminopeptidase family, N-terminal domain J4T77_00250 PF00883 Cytosol aminopeptidase family, catalytic domain J4T77_00260 PF00216 Bacterial DNA-binding protein J4T77_00270 PF01551 Peptidase family M23 J4T77_00275 PF09334 tRNA synthetases class I (M) J4T77_00275 PF08264 Anticodon-binding domain of tRNA J4T77_00275 PF00133 tRNA synthetases class I (I, L, M and V) J4T77_00275 PF13603 Leucyl-tRNA synthetase, Domain 2 J4T77_00285 PF13276 HTH-like domain J4T77_00285 PF13333 Integrase core domain J4T77_00285 PF00665 Integrase core domain J4T77_00290 PF13276 HTH-like domain J4T77_00290 PF13333 Integrase core domain J4T77_00290 PF00665 Integrase core domain J4T77_00305 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4T77_00315 PF00380 Ribosomal protein S9/S16 J4T77_00320 PF00572 Ribosomal protein L13 J4T77_00330 PF10691 Protein of unknown function (DUF2497) J4T77_00335 PF01728 FtsJ-like methyltransferase J4T77_00375 PF13276 HTH-like domain J4T77_00375 PF00665 Integrase core domain J4T77_00375 PF13333 Integrase core domain J4T77_00380 PF13276 HTH-like domain J4T77_00380 PF00665 Integrase core domain J4T77_00380 PF13333 Integrase core domain J4T77_00415 PF02355 Protein export membrane protein J4T77_00420 PF00665 Integrase core domain J4T77_00420 PF13276 HTH-like domain J4T77_00420 PF13333 Integrase core domain J4T77_00435 PF00571 CBS domain J4T77_00435 PF00478 IMP dehydrogenase / GMP reductase domain J4T77_00440 PF00398 Ribosomal RNA adenine dimethylase J4T77_00450 PF00121 Triosephosphate isomerase J4T77_00455 PF17782 DprA winged helix domain J4T77_00455 PF02481 DNA recombination-mediator protein A J4T77_00460 PF11953 Domain of unknown function (DUF3470) J4T77_00460 PF00037 4Fe-4S binding domain J4T77_00470 PF07478 D-ala D-ala ligase C-terminus J4T77_00470 PF01820 D-ala D-ala ligase N-terminus J4T77_00475 PF03799 Cell division protein FtsQ J4T77_00475 PF08478 POTRA domain, FtsQ-type J4T77_00480 PF07943 Penicillin-binding protein 5, C-terminal domain J4T77_00480 PF00768 D-alanyl-D-alanine carboxypeptidase J4T77_00485 PF00893 Small Multidrug Resistance protein J4T77_00490 PF00893 Small Multidrug Resistance protein J4T77_00505 PF00171 Aldehyde dehydrogenase family J4T77_00505 PF01619 Proline dehydrogenase J4T77_00505 PF14850 DNA-binding domain of Proline dehydrogenase J4T77_00505 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4T77_00510 PF00330 Aconitase family (aconitate hydratase) J4T77_00510 PF00694 Aconitase C-terminal domain J4T77_00515 PF02556 Preprotein translocase subunit SecB J4T77_00525 PF00929 Exonuclease J4T77_00530 PF02630 SCO1/SenC J4T77_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4T77_00540 PF00986 DNA gyrase B subunit, carboxyl terminus J4T77_00540 PF01751 Toprim domain J4T77_00540 PF00204 DNA gyrase B J4T77_00565 PF13276 HTH-like domain J4T77_00565 PF00665 Integrase core domain J4T77_00565 PF13333 Integrase core domain J4T77_00575 PF04551 GcpE protein J4T77_00590 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4T77_00590 PF17854 FtsK alpha domain J4T77_00590 PF09397 Ftsk gamma domain J4T77_00590 PF01580 FtsK/SpoIIIE family J4T77_00595 PF02325 YGGT family J4T77_00645 PF00677 Lumazine binding domain J4T77_00655 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4T77_00655 PF01409 tRNA synthetases class II core domain (F) J4T77_00660 PF00132 Bacterial transferase hexapeptide (six repeats) J4T77_00660 PF14602 Hexapeptide repeat of succinyl-transferase J4T77_00660 PF12804 MobA-like NTP transferase domain J4T77_00665 PF00829 Ribosomal prokaryotic L21 protein J4T77_00670 PF01016 Ribosomal L27 protein J4T77_00680 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4T77_00680 PF02772 S-adenosylmethionine synthetase, central domain J4T77_00680 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4T77_00690 PF03070 TENA/THI-4/PQQC family J4T77_00700 PF00510 Cytochrome c oxidase subunit III J4T77_00705 PF02075 Crossover junction endodeoxyribonuclease RuvC J4T77_00710 PF03652 Holliday junction resolvase J4T77_00720 PF02637 GatB domain J4T77_00720 PF02934 GatB/GatE catalytic domain J4T77_00735 PF01406 tRNA synthetases class I (C) catalytic domain J4T77_00735 PF09190 DALR domain J4T77_00740 PF06055 Exopolysaccharide synthesis, ExoD J4T77_00750 PF02416 mttA/Hcf106 family J4T77_00755 PF00005 ABC transporter J4T77_00755 PF08402 TOBE domain J4T77_00765 PF01541 GIY-YIG catalytic domain J4T77_00765 PF02151 UvrB/uvrC motif J4T77_00765 PF08459 UvrC Helix-hairpin-helix N-terminal J4T77_00770 PF05746 DALR anticodon binding domain J4T77_00770 PF02092 Glycyl-tRNA synthetase beta subunit J4T77_00775 PF02091 Glycyl-tRNA synthetase alpha subunit J4T77_00785 PF00490 Delta-aminolevulinic acid dehydratase J4T77_00790 PF00146 NADH dehydrogenase J4T77_00795 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J4T77_00795 PF00384 Molybdopterin oxidoreductase J4T77_00795 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4T77_00805 PF03167 Uracil DNA glycosylase superfamily J4T77_00810 PF01327 Polypeptide deformylase J4T77_00815 PF11983 Membrane-attachment and polymerisation-promoting switch J4T77_00815 PF02491 SHS2 domain inserted in FTSA J4T77_00820 PF00557 Metallopeptidase family M24 J4T77_00825 PF07690 Major Facilitator Superfamily J4T77_00825 PF00083 Sugar (and other) transporter J4T77_00830 PF01795 MraW methylase family J4T77_00845 PF01386 Ribosomal L25p family J4T77_00845 PF14693 Ribosomal protein TL5, C-terminal domain J4T77_00850 PF01195 Peptidyl-tRNA hydrolase J4T77_00860 PF01494 FAD binding domain J4T77_00870 PF10609 NUBPL iron-transfer P-loop NTPase J4T77_00895 PF13276 HTH-like domain J4T77_00895 PF00665 Integrase core domain J4T77_00895 PF13333 Integrase core domain J4T77_00900 PF13276 HTH-like domain J4T77_00900 PF00665 Integrase core domain J4T77_00900 PF13333 Integrase core domain J4T77_00910 PF01121 Dephospho-CoA kinase J4T77_00940 PF00117 Glutamine amidotransferase class-I J4T77_00940 PF00958 GMP synthase C terminal domain J4T77_00940 PF02540 NAD synthase J4T77_00945 PF03477 ATP cone domain J4T77_00945 PF02867 Ribonucleotide reductase, barrel domain J4T77_00945 PF00317 Ribonucleotide reductase, all-alpha domain J4T77_00950 PF01209 ubiE/COQ5 methyltransferase family J4T77_00975 PF00468 Ribosomal protein L34 J4T77_00980 PF00528 Binding-protein-dependent transport system inner membrane component J4T77_00985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4T77_00985 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4T77_00990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4T77_01000 PF13276 HTH-like domain J4T77_01000 PF13333 Integrase core domain J4T77_01000 PF00665 Integrase core domain J4T77_01015 PF00596 Class II Aldolase and Adducin N-terminal domain J4T77_01025 PF00814 Glycoprotease family J4T77_01035 PF00268 Ribonucleotide reductase, small chain J4T77_01055 PF17761 DUF1016 N-terminal domain J4T77_01055 PF06250 YhcG PDDEXK nuclease domain J4T77_01065 PF02565 Recombination protein O C terminal J4T77_01065 PF11967 Recombination protein O N terminal J4T77_01075 PF00990 Diguanylate cyclase, GGDEF domain J4T77_01075 PF00072 Response regulator receiver domain J4T77_01085 PF05088 Bacterial NAD-glutamate dehydrogenase J4T77_01090 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_01090 PF10431 C-terminal, D2-small domain, of ClpB protein J4T77_01090 PF07724 AAA domain (Cdc48 subfamily) J4T77_01090 PF17871 AAA lid domain J4T77_01090 PF02861 Clp amino terminal domain, pathogenicity island component J4T77_01105 PF00679 Elongation factor G C-terminus J4T77_01105 PF00009 Elongation factor Tu GTP binding domain J4T77_01105 PF03144 Elongation factor Tu domain 2 J4T77_01110 PF00156 Phosphoribosyl transferase domain J4T77_01115 PF00375 Sodium:dicarboxylate symporter family J4T77_01120 PF01979 Amidohydrolase family J4T77_01140 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4T77_01140 PF01578 Cytochrome C assembly protein J4T77_01155 PF01425 Amidase J4T77_01160 PF04055 Radical SAM superfamily J4T77_01160 PF00919 Uncharacterized protein family UPF0004 J4T77_01180 PF03330 Lytic transglycolase J4T77_01185 PF01225 Mur ligase family, catalytic domain J4T77_01185 PF02875 Mur ligase family, glutamate ligase domain J4T77_01185 PF08245 Mur ligase middle domain J4T77_01190 PF00113 Enolase, C-terminal TIM barrel domain J4T77_01190 PF03952 Enolase, N-terminal domain J4T77_01195 PF01018 GTP1/OBG J4T77_01195 PF01926 50S ribosome-binding GTPase J4T77_01200 PF00206 Lyase J4T77_01200 PF10415 Fumarase C C-terminus J4T77_01205 PF00462 Glutaredoxin J4T77_01220 PF00390 Malic enzyme, N-terminal domain J4T77_01220 PF03949 Malic enzyme, NAD binding domain J4T77_01220 PF01515 Phosphate acetyl/butaryl transferase J4T77_01225 PF01066 CDP-alcohol phosphatidyltransferase J4T77_01235 PF13525 Outer membrane lipoprotein J4T77_01240 PF01709 Transcriptional regulator J4T77_01245 PF01551 Peptidase family M23 J4T77_01245 PF08525 Opacity-associated protein A N-terminal motif J4T77_01245 PF01476 LysM domain J4T77_01270 PF00679 Elongation factor G C-terminus J4T77_01270 PF14492 Elongation Factor G, domain II J4T77_01270 PF00009 Elongation factor Tu GTP binding domain J4T77_01270 PF03144 Elongation factor Tu domain 2 J4T77_01270 PF06421 GTP-binding protein LepA C-terminus J4T77_01280 PF02780 Transketolase, C-terminal domain J4T77_01280 PF00364 Biotin-requiring enzyme J4T77_01280 PF02779 Transketolase, pyrimidine binding domain J4T77_01285 PF17862 AAA+ lid domain J4T77_01285 PF06480 FtsH Extracellular J4T77_01285 PF01434 Peptidase family M41 J4T77_01285 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_01295 PF00083 Sugar (and other) transporter J4T77_01295 PF07690 Major Facilitator Superfamily J4T77_01300 PF14437 MafB19-like deaminase J4T77_01305 PF06418 CTP synthase N-terminus J4T77_01305 PF00117 Glutamine amidotransferase class-I J4T77_01325 PF08264 Anticodon-binding domain of tRNA J4T77_01325 PF00133 tRNA synthetases class I (I, L, M and V) J4T77_01345 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_01345 PF17862 AAA+ lid domain J4T77_01345 PF06480 FtsH Extracellular J4T77_01345 PF01434 Peptidase family M41 J4T77_01355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4T77_01375 PF00005 ABC transporter J4T77_01380 PF00528 Binding-protein-dependent transport system inner membrane component J4T77_01385 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4T77_01390 PF01316 Arginine repressor, DNA binding domain J4T77_01390 PF02863 Arginine repressor, C-terminal domain J4T77_01395 PF00902 Sec-independent protein translocase protein (TatC) J4T77_01400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4T77_01400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4T77_01425 PF01743 Poly A polymerase head domain J4T77_01425 PF12627 Probable RNA and SrmB- binding site of polymerase A J4T77_01425 PF13735 tRNA nucleotidyltransferase domain 2 putative J4T77_01435 PF01926 50S ribosome-binding GTPase J4T77_01435 PF06071 Protein of unknown function (DUF933) J4T77_01455 PF00625 Guanylate kinase J4T77_01465 PF02910 Fumarate reductase flavoprotein C-term J4T77_01465 PF00890 FAD binding domain J4T77_01470 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4T77_01480 PF02785 Biotin carboxylase C-terminal domain J4T77_01480 PF00289 Biotin carboxylase, N-terminal domain J4T77_01480 PF00364 Biotin-requiring enzyme J4T77_01480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4T77_01480 PF18140 Propionyl-coenzyme A carboxylase BT domain J4T77_01485 PF02628 Cytochrome oxidase assembly protein J4T77_01505 PF00137 ATP synthase subunit C J4T77_01510 PF00119 ATP synthase A chain J4T77_01520 PF01588 Putative tRNA binding domain J4T77_01520 PF03484 tRNA synthetase B5 domain J4T77_01520 PF03483 B3/4 domain J4T77_01520 PF03147 Ferredoxin-fold anticodon binding domain J4T77_01520 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4T77_01530 PF08264 Anticodon-binding domain of tRNA J4T77_01530 PF00133 tRNA synthetases class I (I, L, M and V) J4T77_01535 PF00854 POT family J4T77_01540 PF04055 Radical SAM superfamily J4T77_01540 PF01938 TRAM domain J4T77_01540 PF00919 Uncharacterized protein family UPF0004 J4T77_01545 PF03653 Uncharacterised protein family (UPF0093) J4T77_01550 PF00676 Dehydrogenase E1 component J4T77_01555 PF00849 RNA pseudouridylate synthase J4T77_01555 PF01479 S4 domain J4T77_01560 PF00083 Sugar (and other) transporter J4T77_01560 PF08946 Osmosensory transporter coiled coil J4T77_01565 PF02938 GAD domain J4T77_01565 PF00152 tRNA synthetases class II (D, K and N) J4T77_01565 PF01336 OB-fold nucleic acid binding domain J4T77_01575 PF00005 ABC transporter J4T77_01605 PF03485 Arginyl tRNA synthetase N terminal domain J4T77_01605 PF05746 DALR anticodon binding domain J4T77_01605 PF00750 tRNA synthetases class I (R) J4T77_01615 PF00005 ABC transporter J4T77_01615 PF00664 ABC transporter transmembrane region J4T77_01645 PF01565 FAD binding domain J4T77_01645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4T77_01650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4T77_01650 PF03900 Porphobilinogen deaminase, C-terminal domain J4T77_01660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4T77_01660 PF00364 Biotin-requiring enzyme J4T77_01660 PF02817 e3 binding domain J4T77_01680 PF02810 SEC-C motif J4T77_01680 PF07517 SecA DEAD-like domain J4T77_01680 PF01043 SecA preprotein cross-linking domain J4T77_01680 PF07516 SecA Wing and Scaffold domain J4T77_01700 PF01381 Helix-turn-helix J4T77_01700 PF08671 Anti-repressor SinI J4T77_01710 PF04002 RadC-like JAB domain J4T77_01715 PF01381 Helix-turn-helix J4T77_01735 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J4T77_01745 PF01098 Cell cycle protein J4T77_01750 PF01209 ubiE/COQ5 methyltransferase family J4T77_01755 PF04055 Radical SAM superfamily J4T77_01755 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4T77_01760 PF00830 Ribosomal L28 family J4T77_01770 PF04384 Iron-sulphur cluster assembly J4T77_01780 PF01479 S4 domain J4T77_01780 PF00163 Ribosomal protein S4/S9 N-terminal domain J4T77_01785 PF02779 Transketolase, pyrimidine binding domain J4T77_01785 PF02780 Transketolase, C-terminal domain J4T77_01785 PF00456 Transketolase, thiamine diphosphate binding domain J4T77_01800 PF07690 Major Facilitator Superfamily J4T77_01830 PF00692 dUTPase J4T77_01850 PF01769 Divalent cation transporter J4T77_01850 PF03448 MgtE intracellular N domain J4T77_01850 PF00571 CBS domain J4T77_01860 PF13333 Integrase core domain J4T77_01860 PF13276 HTH-like domain J4T77_01860 PF00665 Integrase core domain J4T77_01865 PF13276 HTH-like domain J4T77_01865 PF00665 Integrase core domain J4T77_01865 PF13333 Integrase core domain J4T77_01880 PF00005 ABC transporter J4T77_01885 PF01113 Dihydrodipicolinate reductase, N-terminus J4T77_01885 PF05173 Dihydrodipicolinate reductase, C-terminus J4T77_01905 PF00950 ABC 3 transport family J4T77_01915 PF00288 GHMP kinases N terminal domain J4T77_01915 PF08544 GHMP kinases C terminal J4T77_01920 PF13361 UvrD-like helicase C-terminal domain J4T77_01920 PF00580 UvrD/REP helicase N-terminal domain J4T77_01920 PF12705 PD-(D/E)XK nuclease superfamily J4T77_01930 PF04002 RadC-like JAB domain J4T77_01935 PF06271 RDD family J4T77_01945 PF00772 DnaB-like helicase N terminal domain J4T77_01945 PF03796 DnaB-like helicase C terminal domain J4T77_01955 PF08264 Anticodon-binding domain of tRNA J4T77_01955 PF09334 tRNA synthetases class I (M) J4T77_01965 PF08241 Methyltransferase domain J4T77_01975 PF08275 DNA primase catalytic core, N-terminal domain J4T77_01975 PF01807 CHC2 zinc finger J4T77_01975 PF13662 Toprim domain J4T77_01980 PF02661 Fic/DOC family J4T77_01980 PF13784 Fic/DOC family N-terminal J4T77_01985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4T77_01990 PF13276 HTH-like domain J4T77_01990 PF00665 Integrase core domain J4T77_01990 PF13333 Integrase core domain J4T77_01995 PF00665 Integrase core domain J4T77_01995 PF13333 Integrase core domain J4T77_01995 PF13276 HTH-like domain J4T77_02015 PF00444 Ribosomal protein L36 J4T77_02020 PF03618 Kinase/pyrophosphorylase J4T77_02025 PF01578 Cytochrome C assembly protein J4T77_02040 PF00709 Adenylosuccinate synthetase J4T77_02055 PF01176 Translation initiation factor 1A / IF-1 J4T77_02060 PF02545 Maf-like protein J4T77_02075 PF01235 Sodium:alanine symporter family J4T77_02140 PF01548 Transposase J4T77_02140 PF02371 Transposase IS116/IS110/IS902 family J4T77_02145 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_02145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4T77_02155 PF03033 Glycosyltransferase family 28 N-terminal domain J4T77_02155 PF04101 Glycosyltransferase family 28 C-terminal domain J4T77_02160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4T77_02160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4T77_02165 PF04972 BON domain J4T77_02175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4T77_02175 PF05697 Bacterial trigger factor protein (TF) J4T77_02175 PF05698 Bacterial trigger factor protein (TF) C-terminus J4T77_02180 PF00574 Clp protease J4T77_02185 PF06689 ClpX C4-type zinc finger J4T77_02185 PF07724 AAA domain (Cdc48 subfamily) J4T77_02185 PF10431 C-terminal, D2-small domain, of ClpB protein J4T77_02190 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_02190 PF05362 Lon protease (S16) C-terminal proteolytic domain J4T77_02190 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4T77_02200 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4T77_02205 PF02272 DHHA1 domain J4T77_02205 PF01368 DHH family J4T77_02205 PF17768 RecJ OB domain J4T77_02210 PF01571 Aminomethyltransferase folate-binding domain J4T77_02215 PF00166 Chaperonin 10 Kd subunit J4T77_02220 PF00118 TCP-1/cpn60 chaperonin family J4T77_02230 PF00075 RNase H J4T77_02235 PF01040 UbiA prenyltransferase family J4T77_02240 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4T77_02245 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4T77_02245 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4T77_02250 PF13333 Integrase core domain J4T77_02250 PF00665 Integrase core domain J4T77_02250 PF13276 HTH-like domain J4T77_02255 PF13276 HTH-like domain J4T77_02255 PF00665 Integrase core domain J4T77_02255 PF13333 Integrase core domain J4T77_02290 PF13333 Integrase core domain J4T77_02290 PF13276 HTH-like domain J4T77_02290 PF00665 Integrase core domain J4T77_02295 PF13276 HTH-like domain J4T77_02295 PF00665 Integrase core domain J4T77_02295 PF13333 Integrase core domain J4T77_02315 PF01467 Cytidylyltransferase-like J4T77_02330 PF01255 Putative undecaprenyl diphosphate synthase J4T77_02340 PF01765 Ribosome recycling factor J4T77_02345 PF00696 Amino acid kinase family J4T77_02350 PF00889 Elongation factor TS J4T77_02355 PF00318 Ribosomal protein S2 J4T77_02365 PF02699 Preprotein translocase subunit J4T77_02370 PF01380 SIS domain J4T77_02465 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4T77_02485 PF13276 HTH-like domain J4T77_02485 PF00665 Integrase core domain J4T77_02485 PF13333 Integrase core domain J4T77_02490 PF13276 HTH-like domain J4T77_02490 PF00665 Integrase core domain J4T77_02490 PF13333 Integrase core domain J4T77_02495 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4T77_02495 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4T77_02500 PF02441 Flavoprotein J4T77_02505 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) J4T77_02510 PF03471 Transporter associated domain J4T77_02510 PF00571 CBS domain J4T77_02510 PF01595 Cyclin M transmembrane N-terminal domain J4T77_02515 PF00202 Aminotransferase class-III J4T77_02520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J4T77_02530 PF02646 RmuC family J4T77_02535 PF00665 Integrase core domain J4T77_02535 PF13276 HTH-like domain J4T77_02535 PF13333 Integrase core domain J4T77_02555 PF07690 Major Facilitator Superfamily J4T77_02560 PF00472 RF-1 domain J4T77_02560 PF03462 PCRF domain J4T77_02565 PF01926 50S ribosome-binding GTPase J4T77_02570 PF00696 Amino acid kinase family J4T77_02575 PF00692 dUTPase J4T77_02605 PF01029 NusB family J4T77_02610 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4T77_02615 PF02096 60Kd inner membrane protein J4T77_02615 PF14849 YidC periplasmic domain J4T77_02625 PF07549 SecD/SecF GG Motif J4T77_02625 PF02355 Protein export membrane protein J4T77_02665 PF00023 Ankyrin repeat J4T77_02800 PF01734 Patatin-like phospholipase J4T77_02815 PF00872 Transposase, Mutator family J4T77_02870 PF13333 Integrase core domain J4T77_02870 PF00665 Integrase core domain J4T77_02870 PF13276 HTH-like domain J4T77_02875 PF13333 Integrase core domain J4T77_02875 PF00665 Integrase core domain J4T77_02875 PF13276 HTH-like domain J4T77_02890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4T77_02890 PF00529 HlyD membrane-fusion protein of T1SS J4T77_02915 PF00925 GTP cyclohydrolase II J4T77_02915 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4T77_02920 PF01272 Transcription elongation factor, GreA/GreB, C-term J4T77_02920 PF03449 Transcription elongation factor, N-terminal J4T77_02925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4T77_02925 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4T77_02925 PF00306 ATP synthase alpha/beta chain, C terminal domain J4T77_02930 PF00213 ATP synthase delta (OSCP) subunit J4T77_02935 PF02021 Uncharacterised protein family UPF0102 J4T77_02940 PF01196 Ribosomal protein L17 J4T77_02945 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4T77_02945 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4T77_02945 PF01000 RNA polymerase Rpb3/RpoA insert domain J4T77_02950 PF00411 Ribosomal protein S11 J4T77_02955 PF00416 Ribosomal protein S13/S18 J4T77_02965 PF00344 SecY translocase J4T77_02970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4T77_02975 PF03719 Ribosomal protein S5, C-terminal domain J4T77_02975 PF00333 Ribosomal protein S5, N-terminal domain J4T77_02980 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4T77_02985 PF00347 Ribosomal protein L6 J4T77_02990 PF00410 Ribosomal protein S8 J4T77_02995 PF00253 Ribosomal protein S14p/S29e J4T77_03000 PF00673 ribosomal L5P family C-terminus J4T77_03000 PF00281 Ribosomal protein L5 J4T77_03005 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4T77_03010 PF00238 Ribosomal protein L14p/L23e J4T77_03015 PF00366 Ribosomal protein S17 J4T77_03020 PF00831 Ribosomal L29 protein J4T77_03025 PF00252 Ribosomal protein L16p/L10e J4T77_03030 PF00189 Ribosomal protein S3, C-terminal domain J4T77_03030 PF07650 KH domain J4T77_03035 PF00237 Ribosomal protein L22p/L17e J4T77_03040 PF00203 Ribosomal protein S19 J4T77_03045 PF00181 Ribosomal Proteins L2, RNA binding domain J4T77_03045 PF03947 Ribosomal Proteins L2, C-terminal domain J4T77_03050 PF00276 Ribosomal protein L23 J4T77_03055 PF00573 Ribosomal protein L4/L1 family J4T77_03060 PF00297 Ribosomal protein L3 J4T77_03065 PF00338 Ribosomal protein S10p/S20e J4T77_03085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4T77_03085 PF00117 Glutamine amidotransferase class-I J4T77_03120 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4T77_03130 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4T77_03130 PF02896 PEP-utilising enzyme, TIM barrel domain J4T77_03130 PF00391 PEP-utilising enzyme, mobile domain J4T77_03415 PF00239 Resolvase, N terminal domain J4T77_03415 PF02796 Helix-turn-helix domain of resolvase J4T77_03490 PF01548 Transposase J4T77_03490 PF02371 Transposase IS116/IS110/IS902 family J4T77_03515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4T77_03515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4T77_03515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4T77_03515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4T77_03535 PF01548 Transposase J4T77_03535 PF02371 Transposase IS116/IS110/IS902 family J4T77_03540 PF00814 Glycoprotease family J4T77_03555 PF00266 Aminotransferase class-V J4T77_03560 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J4T77_03570 PF00005 ABC transporter J4T77_03575 PF01521 Iron-sulphur cluster biosynthesis J4T77_03580 PF01966 HD domain J4T77_03580 PF13286 Phosphohydrolase-associated domain J4T77_03585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4T77_03585 PF01872 RibD C-terminal domain J4T77_03595 PF00834 Ribulose-phosphate 3 epimerase family J4T77_03605 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J4T77_03605 PF14602 Hexapeptide repeat of succinyl-transferase J4T77_03605 PF00132 Bacterial transferase hexapeptide (six repeats) J4T77_03640 PF00905 Penicillin binding protein transpeptidase domain J4T77_03640 PF03717 Penicillin-binding Protein dimerisation domain J4T77_03645 PF00457 Glycosyl hydrolases family 11 J4T77_03645 PF01522 Polysaccharide deacetylase J4T77_03645 PF03422 Carbohydrate binding module (family 6) J4T77_03650 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4T77_03650 PF01078 Magnesium chelatase, subunit ChlI J4T77_03660 PF00091 Tubulin/FtsZ family, GTPase domain J4T77_03660 PF12327 FtsZ family, C-terminal domain J4T77_03675 PF02130 Uncharacterized protein family UPF0054 J4T77_03680 PF13085 2Fe-2S iron-sulfur cluster binding domain J4T77_03695 PF04608 Phosphatidylglycerophosphatase A J4T77_03700 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4T77_03700 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4T77_03705 PF00486 Transcriptional regulatory protein, C terminal J4T77_03705 PF00072 Response regulator receiver domain J4T77_03725 PF01702 Queuine tRNA-ribosyltransferase J4T77_03735 PF05193 Peptidase M16 inactive domain J4T77_03735 PF00675 Insulinase (Peptidase family M16) J4T77_03740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4T77_03740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4T77_03760 PF02322 Cytochrome bd terminal oxidase subunit II J4T77_03765 PF01926 50S ribosome-binding GTPase J4T77_03765 PF07650 KH domain J4T77_03805 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_03805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4T77_03810 PF00589 Phage integrase family J4T77_03810 PF02899 Phage integrase, N-terminal SAM-like domain J4T77_03830 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_03835 PF00578 AhpC/TSA family J4T77_03835 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4T77_03845 PF00462 Glutaredoxin J4T77_03850 PF01687 Riboflavin kinase J4T77_03850 PF06574 FAD synthetase J4T77_03855 PF01252 Signal peptidase (SPase) II J4T77_03860 PF00675 Insulinase (Peptidase family M16) J4T77_03860 PF05193 Peptidase M16 inactive domain J4T77_03870 PF00551 Formyl transferase J4T77_03915 PF17757 UvrB interaction domain J4T77_03915 PF12344 Ultra-violet resistance protein B J4T77_03915 PF02151 UvrB/uvrC motif J4T77_03915 PF00271 Helicase conserved C-terminal domain J4T77_03915 PF04851 Type III restriction enzyme, res subunit J4T77_03930 PF02371 Transposase IS116/IS110/IS902 family J4T77_03930 PF01548 Transposase J4T77_03935 PF03918 Cytochrome C biogenesis protein J4T77_03945 PF00111 2Fe-2S iron-sulfur cluster binding domain J4T77_03950 PF17191 RecG wedge domain J4T77_03950 PF00271 Helicase conserved C-terminal domain J4T77_03950 PF00270 DEAD/DEAH box helicase J4T77_03970 PF01300 Telomere recombination J4T77_03990 PF13244 Domain of unknown function (DUF4040) J4T77_03990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4T77_03990 PF00361 Proton-conducting membrane transporter J4T77_04000 PF01648 4'-phosphopantetheinyl transferase superfamily J4T77_04005 PF03129 Anticodon binding domain J4T77_04005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4T77_04030 PF00034 Cytochrome c J4T77_04040 PF00579 tRNA synthetases class I (W and Y) J4T77_04045 PF01025 GrpE J4T77_04050 PF00348 Polyprenyl synthetase J4T77_04055 PF00886 Ribosomal protein S16 J4T77_04060 PF00639 PPIC-type PPIASE domain J4T77_04070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4T77_04070 PF07497 Rho termination factor, RNA-binding domain J4T77_04070 PF07498 Rho termination factor, N-terminal domain J4T77_04085 PF18324 Hypothetical protein TT1725 J4T77_04085 PF00180 Isocitrate/isopropylmalate dehydrogenase J4T77_04095 PF00730 HhH-GPD superfamily base excision DNA repair protein J4T77_04095 PF00633 Helix-hairpin-helix motif J4T77_04095 PF10576 Iron-sulfur binding domain of endonuclease III J4T77_04100 PF01546 Peptidase family M20/M25/M40 J4T77_04100 PF07687 Peptidase dimerisation domain J4T77_04105 PF13685 Iron-containing alcohol dehydrogenase J4T77_04115 PF00206 Lyase J4T77_04115 PF10397 Adenylosuccinate lyase C-terminus J4T77_04125 PF03948 Ribosomal protein L9, C-terminal domain J4T77_04125 PF01281 Ribosomal protein L9, N-terminal domain J4T77_04130 PF01084 Ribosomal protein S18 J4T77_04135 PF01250 Ribosomal protein S6 J4T77_04140 PF02811 PHP domain J4T77_04140 PF14579 Helix-hairpin-helix motif J4T77_04140 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4T77_04140 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4T77_04145 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4T77_04150 PF12826 Helix-hairpin-helix motif J4T77_04150 PF01653 NAD-dependent DNA ligase adenylation domain J4T77_04150 PF00533 BRCA1 C Terminus (BRCT) domain J4T77_04150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4T77_04150 PF03120 NAD-dependent DNA ligase OB-fold domain J4T77_04155 PF00701 Dihydrodipicolinate synthetase family J4T77_04160 PF00436 Single-strand binding protein family J4T77_04185 PF00005 ABC transporter J4T77_04185 PF00664 ABC transporter transmembrane region J4T77_04190 PF01790 Prolipoprotein diacylglyceryl transferase J4T77_04195 PF01668 SmpB protein J4T77_04215 PF13180 PDZ domain J4T77_04220 PF01145 SPFH domain / Band 7 family J4T77_04225 PF01145 SPFH domain / Band 7 family J4T77_04265 PF08245 Mur ligase middle domain J4T77_04290 PF04610 TrbL/VirB6 plasmid conjugal transfer protein J4T77_04295 PF04610 TrbL/VirB6 plasmid conjugal transfer protein J4T77_04300 PF04610 TrbL/VirB6 plasmid conjugal transfer protein J4T77_04305 PF04610 TrbL/VirB6 plasmid conjugal transfer protein J4T77_04310 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J4T77_04320 PF01921 tRNA synthetases class I (K) J4T77_04330 PF02272 DHHA1 domain J4T77_04330 PF01411 tRNA synthetases class II (A) J4T77_04330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4T77_04340 PF01632 Ribosomal protein L35 J4T77_04345 PF00453 Ribosomal protein L20 J4T77_04350 PF02911 Formyl transferase, C-terminal domain J4T77_04350 PF00551 Formyl transferase J4T77_04355 PF01808 AICARFT/IMPCHase bienzyme J4T77_04355 PF02142 MGS-like domain J4T77_04365 PF01676 Metalloenzyme superfamily J4T77_04365 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4T77_04370 PF00698 Acyl transferase domain J4T77_04375 PF01197 Ribosomal protein L31 J4T77_04380 PF01513 ATP-NAD kinase J4T77_04390 PF00665 Integrase core domain J4T77_04390 PF13276 HTH-like domain J4T77_04390 PF13333 Integrase core domain J4T77_04430 PF00085 Thioredoxin J4T77_04440 PF03070 TENA/THI-4/PQQC family J4T77_04450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4T77_04450 PF00809 Pterin binding enzyme J4T77_04455 PF00186 Dihydrofolate reductase J4T77_04465 PF18073 Rubredoxin metal binding domain J4T77_04470 PF02881 SRP54-type protein, helical bundle domain J4T77_04470 PF00448 SRP54-type protein, GTPase domain J4T77_04475 PF01592 NifU-like N terminal domain J4T77_04480 PF01521 Iron-sulphur cluster biosynthesis J4T77_04485 PF07743 HSCB C-terminal oligomerisation domain J4T77_04490 PF00012 Hsp70 protein J4T77_04495 PF10502 Signal peptidase, peptidase S26 J4T77_04500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4T77_04500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4T77_04540 PF02660 Glycerol-3-phosphate acyltransferase J4T77_04545 PF01235 Sodium:alanine symporter family J4T77_04550 PF01235 Sodium:alanine symporter family J4T77_04555 PF01066 CDP-alcohol phosphatidyltransferase J4T77_04560 PF02666 Phosphatidylserine decarboxylase J4T77_04565 PF00154 recA bacterial DNA recombination protein J4T77_04570 PF01556 DnaJ C terminal domain J4T77_04570 PF00684 DnaJ central domain J4T77_04570 PF00226 DnaJ domain J4T77_04575 PF08245 Mur ligase middle domain J4T77_04575 PF02875 Mur ligase family, glutamate ligase domain J4T77_04590 PF03364 Polyketide cyclase / dehydrase and lipid transport J4T77_04595 PF13462 Thioredoxin J4T77_04625 PF12169 DNA polymerase III subunits gamma and tau domain III J4T77_04630 PF02575 YbaB/EbfC DNA-binding family J4T77_04635 PF13505 Outer membrane protein beta-barrel domain J4T77_04640 PF00140 Sigma-70 factor, region 1.2 J4T77_04640 PF04545 Sigma-70, region 4 J4T77_04640 PF04542 Sigma-70 region 2 J4T77_04650 PF00712 DNA polymerase III beta subunit, N-terminal domain J4T77_04650 PF02767 DNA polymerase III beta subunit, central domain J4T77_04650 PF02768 DNA polymerase III beta subunit, C-terminal domain J4T77_04655 PF01416 tRNA pseudouridine synthase J4T77_04665 PF00033 Cytochrome b/b6/petB J4T77_04665 PF02167 Cytochrome C1 family J4T77_04665 PF00032 Cytochrome b(C-terminal)/b6/petD J4T77_04675 PF00033 Cytochrome b/b6/petB J4T77_04675 PF00032 Cytochrome b(C-terminal)/b6/petD J4T77_04680 PF00226 DnaJ domain J4T77_04680 PF00684 DnaJ central domain J4T77_04680 PF01556 DnaJ C terminal domain J4T77_04690 PF00226 DnaJ domain J4T77_04690 PF01556 DnaJ C terminal domain J4T77_04690 PF00684 DnaJ central domain J4T77_04700 PF13393 Histidyl-tRNA synthetase J4T77_04700 PF03129 Anticodon binding domain J4T77_04705 PF01975 Survival protein SurE J4T77_04715 PF02978 Signal peptide binding domain J4T77_04715 PF02881 SRP54-type protein, helical bundle domain J4T77_04715 PF00448 SRP54-type protein, GTPase domain J4T77_04725 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_04730 PF07977 FabA-like domain J4T77_04740 PF01103 Surface antigen J4T77_04740 PF07244 Surface antigen variable number repeat J4T77_04745 PF02163 Peptidase family M50 J4T77_04745 PF17820 PDZ domain J4T77_04760 PF00216 Bacterial DNA-binding protein J4T77_04765 PF00575 S1 RNA binding domain J4T77_04770 PF02390 Putative methyltransferase J4T77_04780 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4T77_04800 PF01926 50S ribosome-binding GTPase J4T77_04800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4T77_04810 PF03232 Ubiquinone biosynthesis protein COQ7 J4T77_04860 PF08338 Domain of unknown function (DUF1731) J4T77_04860 PF01370 NAD dependent epimerase/dehydratase family J4T77_04865 PF01225 Mur ligase family, catalytic domain J4T77_04865 PF02875 Mur ligase family, glutamate ligase domain J4T77_04865 PF08245 Mur ligase middle domain J4T77_04880 PF01230 HIT domain J4T77_04885 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J4T77_04890 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J4T77_04895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J4T77_04900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4T77_04900 PF00056 lactate/malate dehydrogenase, NAD binding domain J4T77_04905 PF01026 TatD related DNase J4T77_04910 PF00293 NUDIX domain J4T77_04930 PF00579 tRNA synthetases class I (W and Y) J4T77_04950 PF07499 RuvA, C-terminal domain J4T77_04950 PF01330 RuvA N terminal domain J4T77_04955 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4T77_04955 PF05491 RuvB C-terminal winged helix domain J4T77_04955 PF17864 RuvB AAA lid domain J4T77_04965 PF02245 Methylpurine-DNA glycosylase (MPG) J4T77_04970 PF00156 Phosphoribosyl transferase domain J4T77_04970 PF13537 Glutamine amidotransferase domain J4T77_04975 PF01098 Cell cycle protein J4T77_04980 PF00361 Proton-conducting membrane transporter J4T77_05000 PF01351 Ribonuclease HII J4T77_05005 PF00953 Glycosyl transferase family 4 J4T77_05020 PF08240 Alcohol dehydrogenase GroES-like domain J4T77_05020 PF00107 Zinc-binding dehydrogenase J4T77_05025 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4T77_05030 PF01027 Inhibitor of apoptosis-promoting Bax1 J4T77_05035 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4T77_05035 PF00588 SpoU rRNA Methylase family J4T77_05045 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4T77_05045 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4T77_05065 PF13520 Amino acid permease J4T77_05090 PF13840 ACT domain J4T77_05090 PF01842 ACT domain J4T77_05090 PF00696 Amino acid kinase family J4T77_05110 PF00580 UvrD/REP helicase N-terminal domain J4T77_05110 PF13361 UvrD-like helicase C-terminal domain J4T77_05120 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J4T77_05125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4T77_05130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4T77_05130 PF00361 Proton-conducting membrane transporter J4T77_05135 PF00361 Proton-conducting membrane transporter J4T77_05140 PF00361 Proton-conducting membrane transporter J4T77_05145 PF08279 HTH domain J4T77_05145 PF03099 Biotin/lipoate A/B protein ligase family J4T77_05145 PF02237 Biotin protein ligase C terminal domain J4T77_05145 PF08279 HTH domain J4T77_05145 PF03099 Biotin/lipoate A/B protein ligase family J4T77_05145 PF02237 Biotin protein ligase C terminal domain J4T77_05155 PF03100 CcmE J4T77_05190 PF01545 Cation efflux family J4T77_05210 PF00464 Serine hydroxymethyltransferase J4T77_05235 PF00155 Aminotransferase class I and II J4T77_05240 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4T77_05245 PF00571 CBS domain J4T77_05245 PF03471 Transporter associated domain J4T77_05260 PF00586 AIR synthase related protein, N-terminal domain J4T77_05260 PF02769 AIR synthase related protein, C-terminal domain J4T77_05265 PF01259 SAICAR synthetase J4T77_05270 PF01746 tRNA (Guanine-1)-methyltransferase J4T77_05275 PF01245 Ribosomal protein L19 J4T77_05285 PF00528 Binding-protein-dependent transport system inner membrane component J4T77_05300 PF17676 LD-carboxypeptidase C-terminal domain J4T77_05300 PF02016 LD-carboxypeptidase N-terminal domain J4T77_05305 PF03099 Biotin/lipoate A/B protein ligase family J4T77_05320 PF04860 Phage portal protein J4T77_05330 PF03023 Lipid II flippase MurJ J4T77_05340 PF13932 GidA associated domain J4T77_05340 PF01134 Glucose inhibited division protein A J4T77_05345 PF00557 Metallopeptidase family M24 J4T77_05345 PF01321 Creatinase/Prolidase N-terminal domain J4T77_05375 PF13333 Integrase core domain J4T77_05375 PF00665 Integrase core domain J4T77_05375 PF13276 HTH-like domain J4T77_05380 PF13333 Integrase core domain J4T77_05380 PF13276 HTH-like domain J4T77_05380 PF00665 Integrase core domain J4T77_05385 PF01367 5'-3' exonuclease, C-terminal SAM fold J4T77_05385 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4T77_05385 PF00476 DNA polymerase family A J4T77_05415 PF01523 Putative modulator of DNA gyrase J4T77_05425 PF00266 Aminotransferase class-V J4T77_05460 PF00586 AIR synthase related protein, N-terminal domain J4T77_05460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4T77_05460 PF02769 AIR synthase related protein, C-terminal domain J4T77_05475 PF17755 UvrA DNA-binding domain J4T77_05475 PF17760 UvrA interaction domain J4T77_05500 PF00581 Rhodanese-like domain J4T77_05500 PF17773 UPF0176 acylphosphatase like domain J4T77_05505 PF00528 Binding-protein-dependent transport system inner membrane component J4T77_05530 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4T77_05530 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4T77_05530 PF13288 DXP reductoisomerase C-terminal domain J4T77_05540 PF00005 ABC transporter J4T77_05545 PF02405 Permease MlaE J4T77_05550 PF01783 Ribosomal L32p protein family J4T77_05555 PF02504 Fatty acid synthesis protein J4T77_05560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4T77_05560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4T77_05570 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_05580 PF01926 50S ribosome-binding GTPase J4T77_05580 PF10396 GTP-binding protein TrmE N-terminus J4T77_05580 PF12631 MnmE helical domain J4T77_05585 PF12838 4Fe-4S dicluster domain J4T77_05595 PF03129 Anticodon binding domain J4T77_05595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4T77_05595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4T77_05600 PF00707 Translation initiation factor IF-3, C-terminal domain J4T77_05600 PF05198 Translation initiation factor IF-3, N-terminal domain J4T77_05605 PF10531 SLBB domain J4T77_05605 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4T77_05605 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J4T77_05620 PF03796 DnaB-like helicase C terminal domain J4T77_05620 PF00772 DnaB-like helicase N terminal domain J4T77_05660 PF08245 Mur ligase middle domain J4T77_05660 PF02875 Mur ligase family, glutamate ligase domain J4T77_05665 PF01053 Cys/Met metabolism PLP-dependent enzyme J4T77_05675 PF00012 Hsp70 protein J4T77_05680 PF00575 S1 RNA binding domain J4T77_05680 PF10150 Ribonuclease E/G family J4T77_05680 PF12111 Polyribonucleotide phosphorylase C terminal J4T77_05685 PF00471 Ribosomal protein L33 J4T77_05715 PF01297 Zinc-uptake complex component A periplasmic J4T77_05720 PF00005 ABC transporter J4T77_05725 PF03109 ABC1 family J4T77_05770 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4T77_05770 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4T77_05775 PF00312 Ribosomal protein S15 J4T77_05780 PF00575 S1 RNA binding domain J4T77_05780 PF01138 3' exoribonuclease family, domain 1 J4T77_05780 PF03725 3' exoribonuclease family, domain 2 J4T77_05780 PF00013 KH domain J4T77_05780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4T77_05815 PF04379 ApaG domain J4T77_05820 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4T77_05820 PF02222 ATP-grasp domain J4T77_05825 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4T77_05825 PF02542 YgbB family J4T77_05830 PF01594 AI-2E family transporter J4T77_05845 PF02899 Phage integrase, N-terminal SAM-like domain J4T77_05845 PF00589 Phage integrase family J4T77_05855 PF01649 Ribosomal protein S20 J4T77_05860 PF00285 Citrate synthase, C-terminal domain J4T77_05885 PF01039 Carboxyl transferase domain J4T77_05900 PF06827 Zinc finger found in FPG and IleRS J4T77_05900 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4T77_05900 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4T77_05905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4T77_05905 PF01243 Pyridoxamine 5'-phosphate oxidase J4T77_05925 PF00849 RNA pseudouridylate synthase J4T77_05925 PF01479 S4 domain J4T77_05930 PF01219 Prokaryotic diacylglycerol kinase J4T77_05940 PF00162 Phosphoglycerate kinase J4T77_05950 PF03060 Nitronate monooxygenase J4T77_05965 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J4T77_05995 PF00521 DNA gyrase/topoisomerase IV, subunit A J4T77_05995 PF03989 DNA gyrase C-terminal domain, beta-propeller J4T77_06000 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4T77_06000 PF00355 Rieske [2Fe-2S] domain J4T77_06005 PF00271 Helicase conserved C-terminal domain J4T77_06005 PF18074 Primosomal protein N C-terminal domain J4T77_06005 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4T77_06005 PF00270 DEAD/DEAH box helicase J4T77_06005 PF17764 3′ DNA-binding domain (3′BD) J4T77_06015 PF02511 Thymidylate synthase complementing protein J4T77_06020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4T77_06030 PF02801 Beta-ketoacyl synthase, C-terminal domain J4T77_06030 PF00109 Beta-ketoacyl synthase, N-terminal domain J4T77_06035 PF00550 Phosphopantetheine attachment site J4T77_06040 PF00348 Polyprenyl synthetase J4T77_06050 PF07724 AAA domain (Cdc48 subfamily) J4T77_06050 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_06050 PF10431 C-terminal, D2-small domain, of ClpB protein J4T77_06055 PF00227 Proteasome subunit J4T77_06070 PF00762 Ferrochelatase J4T77_06080 PF00334 Nucleoside diphosphate kinase J4T77_06090 PF13662 Toprim domain J4T77_06090 PF02132 RecR protein J4T77_06105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4T77_06105 PF00364 Biotin-requiring enzyme J4T77_06105 PF02817 e3 binding domain J4T77_06120 PF01348 Type II intron maturase J4T77_06120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J4T77_06130 PF02632 BioY family J4T77_06135 PF00881 Nitroreductase family J4T77_06140 PF01678 Diaminopimelate epimerase J4T77_06145 PF02629 CoA binding domain J4T77_06145 PF00549 CoA-ligase J4T77_06150 PF00549 CoA-ligase J4T77_06150 PF08442 ATP-grasp domain J4T77_06165 PF04452 RNA methyltransferase J4T77_06180 PF01218 Coproporphyrinogen III oxidase J4T77_06185 PF00072 Response regulator receiver domain J4T77_06185 PF08448 PAS fold J4T77_06185 PF13188 PAS domain J4T77_06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4T77_06185 PF00512 His Kinase A (phospho-acceptor) domain J4T77_06190 PF13614 AAA domain J4T77_06195 PF17762 HTH domain found in ParB protein J4T77_06195 PF02195 ParB-like nuclease domain J4T77_06215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4T77_06220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4T77_06260 PF02687 FtsX-like permease family J4T77_06260 PF12704 MacB-like periplasmic core domain J4T77_06280 PF00231 ATP synthase J4T77_06285 PF01523 Putative modulator of DNA gyrase J4T77_06290 PF00313 'Cold-shock' DNA-binding domain J4T77_06295 PF00270 DEAD/DEAH box helicase J4T77_06295 PF00271 Helicase conserved C-terminal domain J4T77_06300 PF10431 C-terminal, D2-small domain, of ClpB protein J4T77_06300 PF02861 Clp amino terminal domain, pathogenicity island component J4T77_06300 PF17871 AAA lid domain J4T77_06300 PF07724 AAA domain (Cdc48 subfamily) J4T77_06300 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_06305 PF01791 DeoC/LacD family aldolase J4T77_06315 PF01180 Dihydroorotate dehydrogenase J4T77_06320 PF00035 Double-stranded RNA binding motif J4T77_06320 PF14622 Ribonuclease-III-like J4T77_06335 PF13091 PLD-like domain J4T77_06355 PF00210 Ferritin-like domain J4T77_06365 PF00999 Sodium/hydrogen exchanger family J4T77_06365 PF02254 TrkA-N domain J4T77_06375 PF02223 Thymidylate kinase J4T77_06385 PF06480 FtsH Extracellular J4T77_06385 PF01434 Peptidase family M41 J4T77_06385 PF17862 AAA+ lid domain J4T77_06385 PF00004 ATPase family associated with various cellular activities (AAA) J4T77_06390 PF01171 PP-loop family J4T77_06395 PF00691 OmpA family J4T77_06420 PF00719 Inorganic pyrophosphatase J4T77_06435 PF00639 PPIC-type PPIASE domain J4T77_06435 PF09312 SurA N-terminal domain J4T77_06440 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4T77_06465 PF03717 Penicillin-binding Protein dimerisation domain J4T77_06465 PF00905 Penicillin binding protein transpeptidase domain J4T77_06470 PF02401 LytB protein J4T77_06480 PF00183 Hsp90 protein J4T77_06490 PF00155 Aminotransferase class I and II J4T77_06500 PF08207 Elongation factor P (EF-P) KOW-like domain J4T77_06500 PF01132 Elongation factor P (EF-P) OB domain J4T77_06500 PF09285 Elongation factor P, C-terminal J4T77_06505 PF01782 RimM N-terminal domain J4T77_06505 PF05239 PRC-barrel domain J4T77_06510 PF00202 Aminotransferase class-III J4T77_06515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4T77_06515 PF00512 His Kinase A (phospho-acceptor) domain J4T77_06515 PF00989 PAS fold J4T77_06520 PF00578 AhpC/TSA family J4T77_06525 PF02463 RecF/RecN/SMC N terminal domain J4T77_06545 PF03631 Virulence factor BrkB J4T77_06560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4T77_06560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4T77_06560 PF02142 MGS-like domain J4T77_06575 PF03979 Sigma-70 factor, region 1.1 J4T77_06575 PF00140 Sigma-70 factor, region 1.2 J4T77_06575 PF04542 Sigma-70 region 2 J4T77_06575 PF04545 Sigma-70, region 4 J4T77_06575 PF04546 Sigma-70, non-essential region J4T77_06575 PF04539 Sigma-70 region 3 J4T77_06580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4T77_06590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4T77_06590 PF00361 Proton-conducting membrane transporter J4T77_06590 PF13244 Domain of unknown function (DUF4040) J4T77_06595 PF03334 Na+/H+ antiporter subunit J4T77_06605 PF01192 RNA polymerase Rpb6 J4T77_06615 PF00731 AIR carboxylase J4T77_06625 PF02779 Transketolase, pyrimidine binding domain J4T77_06625 PF16078 2-oxoglutarate dehydrogenase N-terminus J4T77_06625 PF16870 2-oxoglutarate dehydrogenase C-terminal J4T77_06625 PF00676 Dehydrogenase E1 component J4T77_06660 PF02661 Fic/DOC family J4T77_06660 PF13784 Fic/DOC family N-terminal J4T77_06665 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4T77_06670 PF01040 UbiA prenyltransferase family J4T77_06675 PF02033 Ribosome-binding factor A J4T77_06680 PF00009 Elongation factor Tu GTP binding domain J4T77_06680 PF11987 Translation-initiation factor 2 J4T77_06680 PF04760 Translation initiation factor IF-2, N-terminal region J4T77_06685 PF13184 NusA-like KH domain J4T77_06685 PF08529 NusA N-terminal domain J4T77_06685 PF00575 S1 RNA binding domain J4T77_06690 PF00873 AcrB/AcrD/AcrF family J4T77_06705 PF00120 Glutamine synthetase, catalytic domain