locus-tag	class	description
J4T77_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J4T77_00025	COG3736	Type IV secretory pathway, component VirB8
J4T77_00040	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
J4T77_00045	COG3505	Type IV secretory pathway VirD4
J4T77_00055	COG2890	protein-(glutamine-N5) methyltransferase activity
J4T77_00065	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J4T77_00095	COG0250	Participates in transcription elongation, termination and antitermination
J4T77_00100	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J4T77_00105	COG0081	regulation of translation
J4T77_00110	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J4T77_00115	COG0222	ribosome binding
J4T77_00120	COG0085	RNA polymerase activity
J4T77_00120	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J4T77_00125	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4T77_00135	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J4T77_00165	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J4T77_00170	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J4T77_00175	COG0823	Involved in the tonB-independent uptake of proteins
J4T77_00250	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J4T77_00260	COG0776	regulation of translation
J4T77_00275	COG0495	leucyl-tRNA aminoacylation
J4T77_00285	COG2801	Transposase and inactivated derivatives
J4T77_00290	COG2801	Transposase and inactivated derivatives
J4T77_00305	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J4T77_00330	COG3827	peptidoglycan binding
J4T77_00335	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
J4T77_00375	COG2801	Transposase and inactivated derivatives
J4T77_00380	COG2801	Transposase and inactivated derivatives
J4T77_00410	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4T77_00415	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4T77_00420	COG2801	Transposase and inactivated derivatives
J4T77_00440	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J4T77_00450	COG0149	triose-phosphate isomerase activity
J4T77_00455	COG0758	DNA mediated transformation
J4T77_00460	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J4T77_00475	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J4T77_00480	COG1686	Belongs to the peptidase S11 family
J4T77_00510	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J4T77_00525	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J4T77_00540	COG0187	DNA topoisomerase II activity
J4T77_00565	COG2801	Transposase and inactivated derivatives
J4T77_00575	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J4T77_00590	COG1674	ftsk spoiiie
J4T77_00645	COG0307	riboflavin synthase, alpha
J4T77_00655	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J4T77_00660	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J4T77_00665	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J4T77_00670	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J4T77_00680	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J4T77_00690	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J4T77_00700	COG1845	cytochrome c oxidase, subunit III
J4T77_00710	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J4T77_00720	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J4T77_00735	COG0215	cysteine-tRNA ligase activity
J4T77_00740	COG3932	Exopolysaccharide synthesis, ExoD
J4T77_00750	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J4T77_00755	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J4T77_00765	COG0322	excinuclease ABC activity
J4T77_00775	COG0752	glycyl-tRNA synthetase alpha subunit
J4T77_00785	COG0113	porphobilinogen synthase activity
J4T77_00790	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J4T77_00805	COG1573	uracil-dna glycosylase
J4T77_00810	COG0242	peptide deformylase activity
J4T77_00820	COG0024	Methionine aminopeptidase
J4T77_00825	COG0477	Major facilitator Superfamily
J4T77_00830	COG0275	rRNA processing
J4T77_00850	COG0193	aminoacyl-tRNA hydrolase activity
J4T77_00860	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4T77_00870	COG0489	protein tyrosine kinase activity
J4T77_00895	COG2801	Transposase and inactivated derivatives
J4T77_00900	COG2801	Transposase and inactivated derivatives
J4T77_00910	COG0237	dephospho-CoA kinase activity
J4T77_00945	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J4T77_00945	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4T77_00980	COG0573	inorganic phosphate transmembrane transporter activity
J4T77_00985	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J4T77_00990	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J4T77_01000	COG2801	Transposase and inactivated derivatives
J4T77_01015	COG0235	Class ii aldolase
J4T77_01055	COG4804	nuclease activity
J4T77_01065	COG1381	Involved in DNA repair and RecF pathway recombination
J4T77_01085	COG2902	Dehydrogenase
J4T77_01090	COG0542	response to heat
J4T77_01105	COG1217	gtp-binding protein TYPA
J4T77_01110	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J4T77_01115	COG1301	dicarboxylic acid transport
J4T77_01140	COG1138	Cytochrome C-type biogenesis protein
J4T77_01155	COG0154	amidase activity
J4T77_01160	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J4T77_01185	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J4T77_01190	COG0148	phosphopyruvate hydratase activity
J4T77_01200	COG0114	fumarate hydratase activity
J4T77_01220	COG0280	phosphate acetyltransferase
J4T77_01220	COG0281	malic enzyme
J4T77_01225	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J4T77_01235	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4T77_01240	COG0217	transcriptional regulatory protein
J4T77_01245	COG0739	heme binding
J4T77_01270	COG0481	GTPase activity
J4T77_01280	COG0022	dehydrogenase e1 component
J4T77_01280	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4T77_01285	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J4T77_01295	COG0477	Major facilitator Superfamily
J4T77_01300	COG0590	tRNA wobble adenosine to inosine editing
J4T77_01305	COG0504	CTP synthase activity
J4T77_01325	COG0525	valine-tRNA ligase activity
J4T77_01345	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J4T77_01355	COG0284	orotidine-5'-phosphate decarboxylase activity
J4T77_01375	COG1126	abc transporter atp-binding protein
J4T77_01380	COG0765	amino acid transport
J4T77_01385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4T77_01390	COG1438	arginine binding
J4T77_01395	COG0805	protein transport
J4T77_01400	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4T77_01425	COG0617	tRNA 3'-terminal CCA addition
J4T77_01435	COG0012	GTP binding
J4T77_01455	COG0194	GDP metabolic process
J4T77_01465	COG1053	succinate dehydrogenase
J4T77_01470	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4T77_01480	COG4770	biotin carboxylase activity
J4T77_01485	COG1612	heme a metabolic process
J4T77_01505	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J4T77_01510	COG0356	it plays a direct role in the translocation of protons across the membrane
J4T77_01520	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4T77_01520	COG0072	phenylalanine-tRNA ligase activity
J4T77_01530	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J4T77_01540	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J4T77_01545	COG1981	membrane
J4T77_01550	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J4T77_01555	COG0564	pseudouridine synthase activity
J4T77_01560	COG0477	Major facilitator Superfamily
J4T77_01575	COG4133	protoheme IX ABC transporter activity
J4T77_01605	COG0018	arginyl-trna synthetase
J4T77_01615	COG1132	(ABC) transporter
J4T77_01645	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J4T77_01660	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4T77_01680	COG0653	protein targeting
J4T77_01710	COG2003	Belongs to the UPF0758 family
J4T77_01715	COG1396	sequence-specific DNA binding
J4T77_01735	COG3344	reverse transcriptase
J4T77_01750	COG2226	methyltransferase
J4T77_01755	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J4T77_01760	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J4T77_01785	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4T77_01800	COG2814	Major facilitator Superfamily
J4T77_01850	COG2239	Acts as a magnesium transporter
J4T77_01860	COG2801	Transposase and inactivated derivatives
J4T77_01865	COG2801	Transposase and inactivated derivatives
J4T77_01885	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J4T77_01905	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4T77_01915	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J4T77_01920	COG1074	ATP-dependent DNA helicase activity
J4T77_01930	COG2003	Belongs to the UPF0758 family
J4T77_01935	COG1714	RDD family
J4T77_01945	COG0305	Participates in initiation and elongation during chromosome replication
J4T77_01955	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4T77_01965	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4T77_01975	COG0358	DNA primase activity
J4T77_01990	COG2801	Transposase and inactivated derivatives
J4T77_01995	COG2801	Transposase and inactivated derivatives
J4T77_02025	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4T77_02040	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4T77_02060	COG0424	maF-like protein
J4T77_02075	COG1115	amino acid carrier protein
J4T77_02145	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4T77_02175	COG0544	peptidyl-prolyl cis-trans isomerase activity
J4T77_02185	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J4T77_02190	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J4T77_02200	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4T77_02205	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J4T77_02210	COG0354	folic acid binding
J4T77_02215	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J4T77_02220	COG0459	protein refolding
J4T77_02230	COG0328	RNA-DNA hybrid ribonuclease activity
J4T77_02235	COG0109	protoheme IX farnesyltransferase activity
J4T77_02240	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4T77_02245	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4T77_02250	COG2801	Transposase and inactivated derivatives
J4T77_02255	COG2801	Transposase and inactivated derivatives
J4T77_02290	COG2801	Transposase and inactivated derivatives
J4T77_02295	COG2801	Transposase and inactivated derivatives
J4T77_02315	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J4T77_02325	COG0575	Belongs to the CDS family
J4T77_02330	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J4T77_02340	COG0233	cytoplasmic translational termination
J4T77_02345	COG0528	UMP kinase activity
J4T77_02350	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J4T77_02355	COG0052	Belongs to the universal ribosomal protein uS2 family
J4T77_02365	COG1862	Preprotein translocase
J4T77_02485	COG2801	Transposase and inactivated derivatives
J4T77_02490	COG2801	Transposase and inactivated derivatives
J4T77_02495	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J4T77_02500	COG0163	prenyltransferase activity
J4T77_02505	COG3750	Belongs to the UPF0335 family
J4T77_02510	COG4536	flavin adenine dinucleotide binding
J4T77_02515	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J4T77_02520	COG0649	NAD binding
J4T77_02530	COG1322	Protein conserved in bacteria
J4T77_02535	COG2801	Transposase and inactivated derivatives
J4T77_02555	COG2814	Major facilitator Superfamily
J4T77_02560	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J4T77_02565	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J4T77_02570	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J4T77_02575	COG0756	dUTP diphosphatase activity
J4T77_02620	COG3577	Aspartyl protease
J4T77_02665	COG0666	response to abiotic stimulus
J4T77_02800	COG3621	Patatin-like phospholipase
J4T77_02815	COG3328	transposase activity
J4T77_02870	COG2801	Transposase and inactivated derivatives
J4T77_02875	COG2801	Transposase and inactivated derivatives
J4T77_02890	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T77_02920	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4T77_02925	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J4T77_02930	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J4T77_02935	COG0792	nuclease activity
J4T77_02945	COG0202	RNA polymerase activity
J4T77_02950	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J4T77_02955	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J4T77_02965	COG0201	protein transport
J4T77_02975	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J4T77_02985	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J4T77_02995	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J4T77_03030	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J4T77_03045	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J4T77_03060	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J4T77_03085	COG0505	Belongs to the CarA family
J4T77_03120	COG1494	fructose-1,6-bisphosphatase
J4T77_03130	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4T77_03130	COG0574	Belongs to the PEP-utilizing enzyme family
J4T77_03515	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4T77_03535	COG3547	Transposase (IS116 IS110 IS902 family)
J4T77_03540	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J4T77_03555	COG1104	cysteine desulfurase activity
J4T77_03560	COG2945	thiolester hydrolase activity
J4T77_03575	COG0316	Belongs to the HesB IscA family
J4T77_03580	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J4T77_03585	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4T77_03585	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4T77_03595	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J4T77_03605	COG2171	N-acyltransferase activity
J4T77_03640	COG0768	penicillin binding
J4T77_03650	COG0606	chelatase, subunit chli
J4T77_03680	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J4T77_03695	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J4T77_03700	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J4T77_03705	COG0745	RESPONSE REGULATOR receiver
J4T77_03720	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
J4T77_03725	COG0343	queuine tRNA-ribosyltransferase activity
J4T77_03735	COG0612	Peptidase, M16
J4T77_03740	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J4T77_03760	COG1294	oxidase, subunit
J4T77_03765	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J4T77_03805	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4T77_03810	COG4974	Belongs to the 'phage' integrase family
J4T77_03835	COG0450	alkyl hydroperoxide reductase
J4T77_03850	COG0196	riboflavin kinase activity
J4T77_03855	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J4T77_03860	COG0612	Peptidase, M16
J4T77_03870	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J4T77_03915	COG0556	nucleotide-excision repair
J4T77_03935	COG3088	subunit of a heme lyase
J4T77_03935	COG4235	cytochrome complex assembly
J4T77_03950	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J4T77_03960	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J4T77_03970	COG0009	L-threonylcarbamoyladenylate synthase
J4T77_04000	COG0736	holo-[acyl-carrier-protein] synthase activity
J4T77_04005	COG0442	prolyl-tRNA aminoacylation
J4T77_04030	COG3474	cytochrome
J4T77_04045	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J4T77_04050	COG0142	geranyltranstransferase activity
J4T77_04070	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
J4T77_04085	COG0473	3-isopropylmalate dehydrogenase activity
J4T77_04095	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J4T77_04100	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4T77_04115	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J4T77_04125	COG0359	binds to the 23S rRNA
J4T77_04135	COG0360	Binds together with S18 to 16S ribosomal RNA
J4T77_04145	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4T77_04150	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J4T77_04155	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4T77_04160	COG0629	single-stranded DNA binding
J4T77_04190	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J4T77_04220	COG0330	HflC and HflK could
J4T77_04225	COG0330	HflC and HflK could
J4T77_04265	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J4T77_04280	COG0742	ribosomal rna small subunit methyltransferase
J4T77_04295	COG1340	protein secretion by the type IV secretion system
J4T77_04295	COG3704	protein secretion by the type IV secretion system
J4T77_04300	COG3704	protein secretion by the type IV secretion system
J4T77_04305	COG3704	protein secretion by the type IV secretion system
J4T77_04310	COG3451	type IV secretory pathway VirB4
J4T77_04320	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
J4T77_04330	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J4T77_04350	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J4T77_04365	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J4T77_04370	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J4T77_04375	COG0254	rRNA binding
J4T77_04380	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J4T77_04390	COG2801	Transposase and inactivated derivatives
J4T77_04440	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
J4T77_04450	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4T77_04450	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J4T77_04465	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J4T77_04470	COG0552	protein localization to endoplasmic reticulum
J4T77_04475	COG0822	iron-sulfur transferase activity
J4T77_04480	COG0316	Belongs to the HesB IscA family
J4T77_04485	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J4T77_04495	COG0681	Belongs to the peptidase S26 family
J4T77_04505	COG1840	ABC-type Fe3 transport system, periplasmic component
J4T77_04540	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J4T77_04545	COG1115	amino acid carrier protein
J4T77_04550	COG1115	amino acid carrier protein
J4T77_04555	COG1183	phosphatidylcholine synthase activity
J4T77_04565	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J4T77_04570	COG0484	heat shock protein binding
J4T77_04575	COG0285	dihydrofolate synthase activity
J4T77_04590	COG2867	negative regulation of translational initiation
J4T77_04625	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J4T77_04630	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J4T77_04640	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4T77_04655	COG0101	tRNA pseudouridine synthase activity
J4T77_04665	COG2857	Cytochrome c1
J4T77_04665	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J4T77_04675	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J4T77_04690	COG0484	heat shock protein binding
J4T77_04700	COG0124	histidyl-tRNA synthetase
J4T77_04715	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J4T77_04725	COG0493	'glutamate synthase
J4T77_04725	COG0543	2 iron, 2 sulfur cluster binding
J4T77_04730	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4T77_04745	COG0750	zinc metalloprotease
J4T77_04760	COG0776	regulation of translation
J4T77_04765	COG0539	negative regulation of cytoplasmic translation
J4T77_04770	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J4T77_04810	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
J4T77_04860	COG1090	epimerase
J4T77_04885	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T77_04895	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T77_04905	COG0084	hydrolase, TatD family'
J4T77_04950	COG0632	four-way junction helicase activity
J4T77_04955	COG2255	four-way junction helicase activity
J4T77_04965	COG2094	Belongs to the DNA glycosylase MPG family
J4T77_04970	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J4T77_04975	COG0772	Belongs to the SEDS family
J4T77_04980	COG0651	ATP synthesis coupled electron transport
J4T77_05000	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J4T77_05005	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J4T77_05025	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
J4T77_05030	COG0670	Belongs to the BI1 family
J4T77_05035	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4T77_05045	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4T77_05065	COG0531	amino acid
J4T77_05090	COG0527	aspartate kinase activity
J4T77_05120	COG0839	Belongs to the complex I subunit 6 family
J4T77_05125	COG0713	ATP synthesis coupled electron transport
J4T77_05130	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J4T77_05135	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T77_05140	COG1007	ATP synthesis coupled electron transport
J4T77_05145	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
J4T77_05145	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
J4T77_05145	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
J4T77_05145	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
J4T77_05155	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
J4T77_05190	COG1230	cation diffusion facilitator family transporter
J4T77_05210	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4T77_05235	COG0436	Aminotransferase
J4T77_05240	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J4T77_05245	COG1253	flavin adenine dinucleotide binding
J4T77_05260	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J4T77_05265	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J4T77_05290	COG0047	phosphoribosylformylglycinamidine synthase activity
J4T77_05305	COG0321	lipoyl(octanoyl) transferase activity
J4T77_05320	COG4695	Portal protein
J4T77_05340	COG0445	tRNA wobble uridine modification
J4T77_05375	COG2801	Transposase and inactivated derivatives
J4T77_05380	COG2801	Transposase and inactivated derivatives
J4T77_05385	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4T77_05385	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4T77_05415	COG0312	modulator of DNA gyrase
J4T77_05425	COG1104	cysteine desulfurase activity
J4T77_05460	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J4T77_05500	COG1054	Belongs to the UPF0176 family
J4T77_05505	COG1178	ABC-type Fe3 transport system permease component
J4T77_05530	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J4T77_05540	COG1127	ABC transporter
J4T77_05545	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J4T77_05550	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J4T77_05560	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T77_05570	COG0492	ferredoxin-NADP+ reductase activity
J4T77_05580	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J4T77_05585	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T77_05595	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J4T77_05600	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J4T77_05605	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J4T77_05665	COG0626	cystathionine gamma-synthase activity
J4T77_05675	COG0443	Heat shock 70 kDa protein
J4T77_05680	COG1530	ribonuclease E activity
J4T77_05685	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J4T77_05720	COG1121	(ABC) transporter
J4T77_05725	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4T77_05770	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J4T77_05780	COG1185	polyribonucleotide nucleotidyltransferase activity
J4T77_05820	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J4T77_05825	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J4T77_05825	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J4T77_05830	COG0628	permease
J4T77_05845	COG4974	Belongs to the 'phage' integrase family
J4T77_05855	COG0268	Binds directly to 16S ribosomal RNA
J4T77_05860	COG0372	Belongs to the citrate synthase family
J4T77_05885	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J4T77_05900	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J4T77_05905	COG0259	pyridoxamine-phosphate oxidase activity
J4T77_05925	COG0564	pseudouridine synthase activity
J4T77_05940	COG0126	phosphoglycerate kinase activity
J4T77_05950	COG2070	2-Nitropropane dioxygenase
J4T77_05965	COG3451	type IV secretory pathway VirB4
J4T77_06000	COG0723	plastoquinol--plastocyanin reductase activity
J4T77_06015	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
J4T77_06020	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J4T77_06030	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4T77_06035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4T77_06040	COG0142	geranyltranstransferase activity
J4T77_06050	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J4T77_06070	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J4T77_06080	COG0105	UTP biosynthetic process
J4T77_06090	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J4T77_06105	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4T77_06130	COG1268	BioY protein
J4T77_06135	COG0778	Nitroreductase
J4T77_06145	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J4T77_06150	COG0045	succinate-CoA ligase (ADP-forming) activity
J4T77_06165	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J4T77_06195	COG1475	DNA binding
J4T77_06215	COG2009	succinate dehydrogenase
J4T77_06220	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J4T77_06260	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4T77_06280	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J4T77_06285	COG0312	modulator of DNA gyrase
J4T77_06290	COG1278	Cold shock
J4T77_06295	COG0513	Belongs to the DEAD box helicase family
J4T77_06305	COG1830	Aldolase
J4T77_06315	COG0167	dihydroorotate dehydrogenase activity
J4T77_06335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T77_06375	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J4T77_06385	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J4T77_06390	COG0037	tRNA processing
J4T77_06395	COG2885	chlorophyll binding
J4T77_06410	COG0482	sulfurtransferase activity
J4T77_06420	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J4T77_06435	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4T77_06440	COG0543	2 iron, 2 sulfur cluster binding
J4T77_06440	COG0493	'glutamate synthase
J4T77_06455	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
J4T77_06470	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J4T77_06480	COG0326	Molecular chaperone. Has ATPase activity
J4T77_06490	COG0156	8-amino-7-oxononanoate synthase activity
J4T77_06500	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J4T77_06510	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J4T77_06515	COG2202	Pas domain
J4T77_06515	COG2205	protein histidine kinase activity
J4T77_06520	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J4T77_06525	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J4T77_06545	COG1295	ribonuclease BN
J4T77_06550	COG1028	Short-chain dehydrogenase reductase Sdr
J4T77_06560	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J4T77_06575	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4T77_06580	COG1006	Multisubunit Na H antiporter MnhC subunit
J4T77_06590	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J4T77_06590	COG2111	Na H antiporter
J4T77_06615	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J4T77_06625	COG0567	Dehydrogenase, E1 component
J4T77_06665	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J4T77_06670	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J4T77_06675	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J4T77_06680	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J4T77_06690	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T77_06705	COG0174	glutamine synthetase