locus-tag class description WD_0001 PF11638 DnaA N-terminal domain WD_0001 PF08299 Bacterial dnaA protein helix-turn-helix WD_0001 PF00308 Bacterial dnaA protein WD_0003 PF00925 GTP cyclohydrolase II WD_0004 PF04335 VirB8 protein WD_0007 PF00437 Type II/IV secretion system protein WD_0008 PF02534 Type IV secretory system Conjugative DNA transfer WD_0010 PF13847 Methyltransferase domain WD_0010 PF17827 PrmC N-terminal domain WD_0014 PF00164 Ribosomal protein S12/S23 WD_0015 PF00177 Ribosomal protein S7p/S5e WD_0016 PF00679 Elongation factor G C-terminus WD_0016 PF03144 Elongation factor Tu domain 2 WD_0016 PF00009 Elongation factor Tu GTP binding domain WD_0016 PF03764 Elongation factor G, domain IV WD_0016 PF14492 Elongation Factor G, domain II WD_0017 PF00009 Elongation factor Tu GTP binding domain WD_0017 PF03144 Elongation factor Tu domain 2 WD_0017 PF03143 Elongation factor Tu C-terminal domain WD_0019 PF02357 Transcription termination factor nusG WD_0019 PF00467 KOW motif WD_0020 PF00298 Ribosomal protein L11, RNA binding domain WD_0020 PF03946 Ribosomal protein L11, N-terminal domain WD_0021 PF00687 Ribosomal protein L1p/L10e family WD_0022 PF00466 Ribosomal protein L10 WD_0024 PF04983 RNA polymerase Rpb1, domain 3 WD_0024 PF00623 RNA polymerase Rpb1, domain 2 WD_0024 PF05000 RNA polymerase Rpb1, domain 4 WD_0024 PF04997 RNA polymerase Rpb1, domain 1 WD_0024 PF04563 RNA polymerase beta subunit WD_0024 PF04561 RNA polymerase Rpb2, domain 2 WD_0024 PF04565 RNA polymerase Rpb2, domain 3 WD_0024 PF10385 RNA polymerase beta subunit external 1 domain WD_0024 PF00562 RNA polymerase Rpb2, domain 6 WD_0024 PF04560 RNA polymerase Rpb2, domain 7 WD_0024 PF04998 RNA polymerase Rpb1, domain 5 WD_0025 PF01207 Dihydrouridine synthase (Dus) WD_0028 PF02403 Seryl-tRNA synthetase N-terminal domain WD_0028 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_0029 PF02844 Phosphoribosylglycinamide synthetase, N domain WD_0029 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WD_0029 PF02843 Phosphoribosylglycinamide synthetase, C domain WD_0036 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WD_0036 PF14572 Phosphoribosyl synthetase-associated domain WD_0037 PF02686 Glu-tRNAGln amidotransferase C subunit WD_0038 PF07676 WD40-like Beta Propeller Repeat WD_0038 PF04052 TolB amino-terminal domain WD_0039 PF12706 Beta-lactamase superfamily domain WD_0039 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WD_0039 PF17770 Ribonuclease J C-terminal domain WD_0040 PF00684 DnaJ central domain WD_0040 PF01556 DnaJ C terminal domain WD_0040 PF00226 DnaJ domain WD_0054 PF02789 Cytosol aminopeptidase family, N-terminal domain WD_0054 PF00883 Cytosol aminopeptidase family, catalytic domain WD_0057 PF00216 Bacterial DNA-binding protein WD_0059 PF01551 Peptidase family M23 WD_0060 PF09334 tRNA synthetases class I (M) WD_0060 PF08264 Anticodon-binding domain of tRNA WD_0060 PF00133 tRNA synthetases class I (I, L, M and V) WD_0060 PF13603 Leucyl-tRNA synthetase, Domain 2 WD_0064 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WD_0066 PF00380 Ribosomal protein S9/S16 WD_0067 PF00572 Ribosomal protein L13 WD_0069 PF10691 Protein of unknown function (DUF2497) WD_0070 PF01728 FtsJ-like methyltransferase WD_0086 PF02355 Protein export membrane protein WD_0089 PF00478 IMP dehydrogenase / GMP reductase domain WD_0089 PF00571 CBS domain WD_0090 PF00398 Ribosomal RNA adenine dimethylase WD_0091 PF00121 Triosephosphate isomerase WD_0092 PF02481 DNA recombination-mediator protein A WD_0092 PF17782 DprA winged helix domain WD_0093 PF11953 Domain of unknown function (DUF3470) WD_0093 PF00037 4Fe-4S binding domain WD_0095 PF07478 D-ala D-ala ligase C-terminus WD_0095 PF01820 D-ala D-ala ligase N-terminus WD_0096 PF03799 Cell division protein FtsQ WD_0096 PF08478 POTRA domain, FtsQ-type WD_0098 PF07943 Penicillin-binding protein 5, C-terminal domain WD_0098 PF00768 D-alanyl-D-alanine carboxypeptidase WD_0099 PF00893 Small Multidrug Resistance protein WD_0100 PF00893 Small Multidrug Resistance protein WD_0103 PF00171 Aldehyde dehydrogenase family WD_0103 PF01619 Proline dehydrogenase WD_0103 PF14850 DNA-binding domain of Proline dehydrogenase WD_0103 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WD_0105 PF00330 Aconitase family (aconitate hydratase) WD_0105 PF00694 Aconitase C-terminal domain WD_0106 PF02556 Preprotein translocase subunit SecB WD_0108 PF00929 Exonuclease WD_0109 PF02630 SCO1/SenC WD_0112 PF00204 DNA gyrase B WD_0112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WD_0112 PF00986 DNA gyrase B subunit, carboxyl terminus WD_0112 PF01751 Toprim domain WD_0115 PF01609 Transposase DDE domain WD_0116 PF04551 GcpE protein WD_0120 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WD_0120 PF01580 FtsK/SpoIIIE family WD_0120 PF17854 FtsK alpha domain WD_0120 PF09397 Ftsk gamma domain WD_0121 PF02325 YGGT family WD_0130 PF00677 Lumazine binding domain WD_0132 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WD_0132 PF01409 tRNA synthetases class II core domain (F) WD_0133 PF12804 MobA-like NTP transferase domain WD_0133 PF14602 Hexapeptide repeat of succinyl-transferase WD_0133 PF00132 Bacterial transferase hexapeptide (six repeats) WD_0134 PF00829 Ribosomal prokaryotic L21 protein WD_0135 PF01016 Ribosomal L27 protein WD_0136 PF00438 S-adenosylmethionine synthetase, N-terminal domain WD_0136 PF02772 S-adenosylmethionine synthetase, central domain WD_0136 PF02773 S-adenosylmethionine synthetase, C-terminal domain WD_0139 PF03070 TENA/THI-4/PQQC family WD_0141 PF00510 Cytochrome c oxidase subunit III WD_0142 PF02075 Crossover junction endodeoxyribonuclease RuvC WD_0143 PF03652 Holliday junction resolvase WD_0146 PF02637 GatB domain WD_0146 PF02934 GatB/GatE catalytic domain WD_0149 PF09190 DALR domain WD_0149 PF01406 tRNA synthetases class I (C) catalytic domain WD_0150 PF06055 Exopolysaccharide synthesis, ExoD WD_0152 PF02416 mttA/Hcf106 family WD_0153 PF08402 TOBE domain WD_0153 PF00005 ABC transporter WD_0154 PF01541 GIY-YIG catalytic domain WD_0154 PF02151 UvrB/uvrC motif WD_0154 PF08459 UvrC Helix-hairpin-helix N-terminal WD_0155 PF02092 Glycyl-tRNA synthetase beta subunit WD_0155 PF05746 DALR anticodon binding domain WD_0156 PF02091 Glycyl-tRNA synthetase alpha subunit WD_0158 PF00490 Delta-aminolevulinic acid dehydratase WD_0159 PF00146 NADH dehydrogenase WD_0160 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WD_0160 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WD_0160 PF00384 Molybdopterin oxidoreductase WD_0164 PF03167 Uracil DNA glycosylase superfamily WD_0165 PF01327 Polypeptide deformylase WD_0166 PF02491 SHS2 domain inserted in FTSA WD_0167 PF00557 Metallopeptidase family M24 WD_0168 PF00083 Sugar (and other) transporter WD_0168 PF07690 Major Facilitator Superfamily WD_0170 PF01795 MraW methylase family WD_0174 PF01386 Ribosomal L25p family WD_0174 PF14693 Ribosomal protein TL5, C-terminal domain WD_0175 PF01195 Peptidyl-tRNA hydrolase WD_0177 PF01494 FAD binding domain WD_0179 PF10609 NUBPL iron-transfer P-loop NTPase WD_0185 PF01121 Dephospho-CoA kinase WD_0186 PF00570 HRDC domain WD_0186 PF01612 3'-5' exonuclease WD_0190 PF05190 MutS family domain IV WD_0190 PF05192 MutS domain III WD_0190 PF05188 MutS domain II WD_0190 PF00488 MutS domain V WD_0190 PF01624 MutS domain I WD_0194 PF03471 Transporter associated domain WD_0194 PF03741 Integral membrane protein TerC family WD_0194 PF00571 CBS domain WD_0195 PF00117 Glutamine amidotransferase class-I WD_0195 PF02540 NAD synthase WD_0195 PF00958 GMP synthase C terminal domain WD_0197 PF02867 Ribonucleotide reductase, barrel domain WD_0197 PF00317 Ribonucleotide reductase, all-alpha domain WD_0197 PF03477 ATP cone domain WD_0198 PF01209 ubiE/COQ5 methyltransferase family WD_0201 PF00468 Ribosomal protein L34 WD_0202 PF00528 Binding-protein-dependent transport system inner membrane component WD_0203 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_0203 PF02874 ATP synthase alpha/beta family, beta-barrel domain WD_0204 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WD_0208 PF00596 Class II Aldolase and Adducin N-terminal domain WD_0210 PF00814 Glycoprotease family WD_0212 PF00268 Ribonucleotide reductase, small chain WD_0217 PF17761 DUF1016 N-terminal domain WD_0217 PF06250 YhcG PDDEXK nuclease domain WD_0219 PF02565 Recombination protein O C terminal WD_0219 PF11967 Recombination protein O N terminal WD_0221 PF00990 Diguanylate cyclase, GGDEF domain WD_0221 PF00072 Response regulator receiver domain WD_0223 PF05088 Bacterial NAD-glutamate dehydrogenase WD_0224 PF07724 AAA domain (Cdc48 subfamily) WD_0224 PF17871 AAA lid domain WD_0224 PF02861 Clp amino terminal domain, pathogenicity island component WD_0224 PF10431 C-terminal, D2-small domain, of ClpB protein WD_0224 PF00004 ATPase family associated with various cellular activities (AAA) WD_0228 PF00156 Phosphoribosyl transferase domain WD_0229 PF00375 Sodium:dicarboxylate symporter family WD_0230 PF01979 Amidohydrolase family WD_0232 PF01578 Cytochrome C assembly protein WD_0232 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WD_0235 PF02355 Protein export membrane protein WD_0235 PF07549 SecD/SecF GG Motif WD_0237 PF14849 YidC periplasmic domain WD_0237 PF02096 60Kd inner membrane protein WD_0238 PF00885 6,7-dimethyl-8-ribityllumazine synthase WD_0239 PF01029 NusB family WD_0243 PF00692 dUTPase WD_0245 PF00696 Amino acid kinase family WD_0246 PF01926 50S ribosome-binding GTPase WD_0247 PF03462 PCRF domain WD_0247 PF00472 RF-1 domain WD_0248 PF07690 Major Facilitator Superfamily WD_0251 PF02646 RmuC family WD_0252 PF01609 Transposase DDE domain WD_0253 PF00872 Transposase, Mutator family WD_0255 PF08671 Anti-repressor SinI WD_0255 PF01381 Helix-turn-helix WD_0257 PF04002 RadC-like JAB domain WD_0263 PF18755 Restriction Enzyme Adenine Methylase Associated WD_0263 PF01555 DNA methylase WD_0288 PF00239 Resolvase, N terminal domain WD_0288 PF02796 Helix-turn-helix domain of resolvase WD_0300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WD_0300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WD_0301 PF00115 Cytochrome C and Quinol oxidase polypeptide I WD_0302 PF01040 UbiA prenyltransferase family WD_0304 PF00075 RNase H WD_0307 PF00118 TCP-1/cpn60 chaperonin family WD_0308 PF00166 Chaperonin 10 Kd subunit WD_0309 PF01571 Aminomethyltransferase folate-binding domain WD_0312 PF17768 RecJ OB domain WD_0312 PF02272 DHHA1 domain WD_0312 PF01368 DHH family WD_0315 PF00115 Cytochrome C and Quinol oxidase polypeptide I WD_0317 PF05362 Lon protease (S16) C-terminal proteolytic domain WD_0317 PF02190 ATP-dependent protease La (LON) substrate-binding domain WD_0317 PF00004 ATPase family associated with various cellular activities (AAA) WD_0318 PF07724 AAA domain (Cdc48 subfamily) WD_0318 PF10431 C-terminal, D2-small domain, of ClpB protein WD_0318 PF06689 ClpX C4-type zinc finger WD_0319 PF00574 Clp protease WD_0320 PF05697 Bacterial trigger factor protein (TF) WD_0320 PF05698 Bacterial trigger factor protein (TF) C-terminus WD_0320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WD_0321 PF04972 BON domain WD_0322 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WD_0322 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WD_0323 PF04101 Glycosyltransferase family 28 C-terminal domain WD_0323 PF03033 Glycosyltransferase family 28 N-terminal domain WD_0325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WD_0325 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_0330 PF01235 Sodium:alanine symporter family WD_0333 PF02545 Maf-like protein WD_0334 PF01176 Translation initiation factor 1A / IF-1 WD_0337 PF00709 Adenylosuccinate synthetase WD_0340 PF01578 Cytochrome C assembly protein WD_0341 PF03618 Kinase/pyrophosphorylase WD_0342 PF00444 Ribosomal protein L36 WD_0345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WD_0346 PF13784 Fic/DOC family N-terminal WD_0346 PF02661 Fic/DOC family WD_0348 PF01807 CHC2 zinc finger WD_0348 PF13662 Toprim domain WD_0348 PF08275 DNA primase catalytic core, N-terminal domain WD_0350 PF08241 Methyltransferase domain WD_0352 PF08264 Anticodon-binding domain of tRNA WD_0352 PF09334 tRNA synthetases class I (M) WD_0354 PF03796 DnaB-like helicase C terminal domain WD_0354 PF00772 DnaB-like helicase N terminal domain WD_0355 PF06271 RDD family WD_0357 PF04002 RadC-like JAB domain WD_0359 PF00580 UvrD/REP helicase N-terminal domain WD_0359 PF13361 UvrD-like helicase C-terminal domain WD_0359 PF12705 PD-(D/E)XK nuclease superfamily WD_0360 PF08544 GHMP kinases C terminal WD_0360 PF00288 GHMP kinases N terminal domain WD_0362 PF00950 ABC 3 transport family WD_0370 PF01113 Dihydrodipicolinate reductase, N-terminus WD_0370 PF05173 Dihydrodipicolinate reductase, C-terminus WD_0371 PF00005 ABC transporter WD_0375 PF01769 Divalent cation transporter WD_0375 PF00571 CBS domain WD_0375 PF03448 MgtE intracellular N domain WD_0379 PF00692 dUTPase WD_0384 PF07690 Major Facilitator Superfamily WD_0387 PF00456 Transketolase, thiamine diphosphate binding domain WD_0387 PF02780 Transketolase, C-terminal domain WD_0387 PF02779 Transketolase, pyrimidine binding domain WD_0388 PF00163 Ribosomal protein S4/S9 N-terminal domain WD_0388 PF01479 S4 domain WD_0389 PF04384 Iron-sulphur cluster assembly WD_0391 PF00830 Ribosomal L28 family WD_0392 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WD_0392 PF04055 Radical SAM superfamily WD_0393 PF01209 ubiE/COQ5 methyltransferase family WD_0394 PF01098 Cell cycle protein WD_0400 PF00664 ABC transporter transmembrane region WD_0400 PF00005 ABC transporter WD_0402 PF00750 tRNA synthetases class I (R) WD_0402 PF03485 Arginyl tRNA synthetase N terminal domain WD_0402 PF05746 DALR anticodon binding domain WD_0411 PF00005 ABC transporter WD_0413 PF02938 GAD domain WD_0413 PF00152 tRNA synthetases class II (D, K and N) WD_0413 PF01336 OB-fold nucleic acid binding domain WD_0414 PF08946 Osmosensory transporter coiled coil WD_0414 PF00083 Sugar (and other) transporter WD_0415 PF01479 S4 domain WD_0415 PF00849 RNA pseudouridylate synthase WD_0416 PF00676 Dehydrogenase E1 component WD_0421 PF00919 Uncharacterized protein family UPF0004 WD_0421 PF01938 TRAM domain WD_0421 PF04055 Radical SAM superfamily WD_0423 PF00133 tRNA synthetases class I (I, L, M and V) WD_0423 PF08264 Anticodon-binding domain of tRNA WD_0425 PF03147 Ferredoxin-fold anticodon binding domain WD_0425 PF03483 B3/4 domain WD_0425 PF03484 tRNA synthetase B5 domain WD_0425 PF01588 Putative tRNA binding domain WD_0425 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WD_0427 PF00119 ATP synthase A chain WD_0428 PF00137 ATP synthase subunit C WD_0432 PF02628 Cytochrome oxidase assembly protein WD_0433 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WD_0433 PF00289 Biotin carboxylase, N-terminal domain WD_0433 PF02785 Biotin carboxylase C-terminal domain WD_0435 PF00749 tRNA synthetases class I (E and Q), catalytic domain WD_0437 PF02910 Fumarate reductase flavoprotein C-term WD_0437 PF00890 FAD binding domain WD_0439 PF00625 Guanylate kinase WD_0442 PF01926 50S ribosome-binding GTPase WD_0442 PF06071 Protein of unknown function (DUF933) WD_0444 PF01743 Poly A polymerase head domain WD_0444 PF12627 Probable RNA and SrmB- binding site of polymerase A WD_0444 PF13735 tRNA nucleotidyltransferase domain 2 putative WD_0451 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WD_0451 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WD_0452 PF00902 Sec-independent protein translocase protein (TatC) WD_0453 PF01316 Arginine repressor, DNA binding domain WD_0453 PF02863 Arginine repressor, C-terminal domain WD_0455 PF00005 ABC transporter WD_0461 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WD_0463 PF01434 Peptidase family M41 WD_0463 PF17862 AAA+ lid domain WD_0463 PF06480 FtsH Extracellular WD_0463 PF00004 ATPase family associated with various cellular activities (AAA) WD_0464 PF00133 tRNA synthetases class I (I, L, M and V) WD_0464 PF08264 Anticodon-binding domain of tRNA WD_0468 PF06418 CTP synthase N-terminus WD_0468 PF00117 Glutamine amidotransferase class-I WD_0469 PF14437 MafB19-like deaminase WD_0470 PF07690 Major Facilitator Superfamily WD_0470 PF00083 Sugar (and other) transporter WD_0472 PF00004 ATPase family associated with various cellular activities (AAA) WD_0472 PF17862 AAA+ lid domain WD_0472 PF06480 FtsH Extracellular WD_0472 PF01434 Peptidase family M41 WD_0473 PF02780 Transketolase, C-terminal domain WD_0473 PF02779 Transketolase, pyrimidine binding domain WD_0473 PF00364 Biotin-requiring enzyme WD_0477 PF06421 GTP-binding protein LepA C-terminus WD_0477 PF00009 Elongation factor Tu GTP binding domain WD_0477 PF14492 Elongation Factor G, domain II WD_0477 PF00679 Elongation factor G C-terminus WD_0477 PF03144 Elongation factor Tu domain 2 WD_0483 PF01551 Peptidase family M23 WD_0483 PF08525 Opacity-associated protein A N-terminal motif WD_0483 PF01476 LysM domain WD_0484 PF01709 Transcriptional regulator WD_0485 PF13525 Outer membrane lipoprotein WD_0487 PF01066 CDP-alcohol phosphatidyltransferase WD_0488 PF00390 Malic enzyme, N-terminal domain WD_0488 PF01515 Phosphate acetyl/butaryl transferase WD_0488 PF03949 Malic enzyme, NAD binding domain WD_0491 PF00462 Glutaredoxin WD_0492 PF10415 Fumarase C C-terminus WD_0492 PF00206 Lyase WD_0493 PF01018 GTP1/OBG WD_0493 PF01926 50S ribosome-binding GTPase WD_0494 PF00113 Enolase, C-terminal TIM barrel domain WD_0494 PF03952 Enolase, N-terminal domain WD_0495 PF02875 Mur ligase family, glutamate ligase domain WD_0495 PF08245 Mur ligase middle domain WD_0495 PF01225 Mur ligase family, catalytic domain WD_0496 PF03330 Lytic transglycolase WD_0503 PF00919 Uncharacterized protein family UPF0004 WD_0503 PF04055 Radical SAM superfamily WD_0505 PF01425 Amidase WD_0509 PF01119 DNA mismatch repair protein, C-terminal domain WD_0509 PF08676 MutL C terminal dimerisation domain WD_0524 PF01467 Cytidylyltransferase-like WD_0527 PF01255 Putative undecaprenyl diphosphate synthase WD_0529 PF01765 Ribosome recycling factor WD_0530 PF00696 Amino acid kinase family WD_0531 PF00889 Elongation factor TS WD_0532 PF00318 Ribosomal protein S2 WD_0534 PF02699 Preprotein translocase subunit WD_0535 PF01380 SIS domain WD_0541 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WD_0541 PF01565 FAD binding domain WD_0542 PF03900 Porphobilinogen deaminase, C-terminal domain WD_0542 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WD_0544 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WD_0544 PF02817 e3 binding domain WD_0544 PF00364 Biotin-requiring enzyme WD_0549 PF01043 SecA preprotein cross-linking domain WD_0549 PF07517 SecA DEAD-like domain WD_0549 PF02810 SEC-C motif WD_0549 PF07516 SecA Wing and Scaffold domain WD_0551 PF00923 Transaldolase/Fructose-6-phosphate aldolase WD_0555 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WD_0555 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WD_0556 PF02441 Flavoprotein WD_0557 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WD_0558 PF03471 Transporter associated domain WD_0558 PF01595 Cyclin M transmembrane N-terminal domain WD_0558 PF00571 CBS domain WD_0559 PF00202 Aminotransferase class-III WD_0560 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WD_0563 PF01609 Transposase DDE domain WD_0594 PF01555 DNA methylase WD_0594 PF18755 Restriction Enzyme Adenine Methylase Associated WD_0596 PF00023 Ankyrin repeat WD_0610 PF00271 Helicase conserved C-terminal domain WD_0610 PF00176 SNF2 family N-terminal domain WD_0610 PF12419 SNF2 Helicase protein WD_0611 PF12804 MobA-like NTP transferase domain WD_0611 PF14602 Hexapeptide repeat of succinyl-transferase WD_0611 PF00132 Bacterial transferase hexapeptide (six repeats) WD_0612 PF16363 GDP-mannose 4,6 dehydratase WD_0616 PF00005 ABC transporter WD_0616 PF00664 ABC transporter transmembrane region WD_0617 PF01212 Beta-eliminating lyase WD_0618 PF01212 Beta-eliminating lyase WD_0620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WD_0620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WD_0620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WD_0621 PF00892 EamA-like transporter family WD_0625 PF04002 RadC-like JAB domain WD_0626 PF01381 Helix-turn-helix WD_0634 PF00239 Resolvase, N terminal domain WD_0634 PF02796 Helix-turn-helix domain of resolvase WD_0637 PF12796 Ankyrin repeats (3 copies) WD_0649 PF00529 HlyD membrane-fusion protein of T1SS WD_0649 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WD_0653 PF00925 GTP cyclohydrolase II WD_0653 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WD_0654 PF03449 Transcription elongation factor, N-terminal WD_0654 PF01272 Transcription elongation factor, GreA/GreB, C-term WD_0655 PF02874 ATP synthase alpha/beta family, beta-barrel domain WD_0655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_0655 PF00306 ATP synthase alpha/beta chain, C terminal domain WD_0656 PF00213 ATP synthase delta (OSCP) subunit WD_0657 PF01196 Ribosomal protein L17 WD_0658 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WD_0658 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WD_0658 PF01000 RNA polymerase Rpb3/RpoA insert domain WD_0659 PF00411 Ribosomal protein S11 WD_0660 PF00416 Ribosomal protein S13/S18 WD_0662 PF00344 SecY translocase WD_0663 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WD_0664 PF00333 Ribosomal protein S5, N-terminal domain WD_0664 PF03719 Ribosomal protein S5, C-terminal domain WD_0665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WD_0666 PF00347 Ribosomal protein L6 WD_0667 PF00410 Ribosomal protein S8 WD_0668 PF00253 Ribosomal protein S14p/S29e WD_0669 PF00673 ribosomal L5P family C-terminus WD_0669 PF00281 Ribosomal protein L5 WD_0670 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WD_0671 PF00238 Ribosomal protein L14p/L23e WD_0672 PF00366 Ribosomal protein S17 WD_0673 PF00831 Ribosomal L29 protein WD_0674 PF00252 Ribosomal protein L16p/L10e WD_0675 PF00189 Ribosomal protein S3, C-terminal domain WD_0675 PF07650 KH domain WD_0676 PF00237 Ribosomal protein L22p/L17e WD_0677 PF00203 Ribosomal protein S19 WD_0678 PF00181 Ribosomal Proteins L2, RNA binding domain WD_0678 PF03947 Ribosomal Proteins L2, C-terminal domain WD_0679 PF00276 Ribosomal protein L23 WD_0680 PF00573 Ribosomal protein L4/L1 family WD_0681 PF00297 Ribosomal protein L3 WD_0682 PF00338 Ribosomal protein S10p/S20e WD_0683 PF03143 Elongation factor Tu C-terminal domain WD_0683 PF03144 Elongation factor Tu domain 2 WD_0683 PF00009 Elongation factor Tu GTP binding domain WD_0684 PF00117 Glutamine amidotransferase class-I WD_0684 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WD_0687 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WD_0690 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WD_0690 PF02896 PEP-utilising enzyme, TIM barrel domain WD_0690 PF00391 PEP-utilising enzyme, mobile domain WD_0693 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_0695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WD_0695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WD_0695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WD_0695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WD_0699 PF00814 Glycoprotease family WD_0705 PF00266 Aminotransferase class-V WD_0706 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WD_0707 PF00005 ABC transporter WD_0708 PF01521 Iron-sulphur cluster biosynthesis WD_0709 PF13286 Phosphohydrolase-associated domain WD_0709 PF01966 HD domain WD_0710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WD_0710 PF01872 RibD C-terminal domain WD_0712 PF00834 Ribulose-phosphate 3 epimerase family WD_0714 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WD_0714 PF00132 Bacterial transferase hexapeptide (six repeats) WD_0714 PF14602 Hexapeptide repeat of succinyl-transferase WD_0719 PF03717 Penicillin-binding Protein dimerisation domain WD_0719 PF00905 Penicillin binding protein transpeptidase domain WD_0720 PF00457 Glycosyl hydrolases family 11 WD_0720 PF03422 Carbohydrate binding module (family 6) WD_0720 PF01522 Polysaccharide deacetylase WD_0721 PF01078 Magnesium chelatase, subunit ChlI WD_0721 PF13335 Magnesium chelatase, subunit ChlI C-terminal WD_0723 PF12327 FtsZ family, C-terminal domain WD_0723 PF00091 Tubulin/FtsZ family, GTPase domain WD_0726 PF02130 Uncharacterized protein family UPF0054 WD_0727 PF13085 2Fe-2S iron-sulfur cluster binding domain WD_0730 PF04608 Phosphatidylglycerophosphatase A WD_0731 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WD_0731 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WD_0732 PF00486 Transcriptional regulatory protein, C terminal WD_0732 PF00072 Response regulator receiver domain WD_0735 PF01702 Queuine tRNA-ribosyltransferase WD_0737 PF00675 Insulinase (Peptidase family M16) WD_0737 PF05193 Peptidase M16 inactive domain WD_0738 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WD_0738 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WD_0740 PF01654 Cytochrome bd terminal oxidase subunit I WD_0741 PF02322 Cytochrome bd terminal oxidase subunit II WD_0743 PF01926 50S ribosome-binding GTPase WD_0743 PF07650 KH domain WD_0751 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WD_0751 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_0752 PF00589 Phage integrase family WD_0752 PF02899 Phage integrase, N-terminal SAM-like domain WD_0755 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_0756 PF10417 C-terminal domain of 1-Cys peroxiredoxin WD_0756 PF00578 AhpC/TSA family WD_0758 PF00462 Glutaredoxin WD_0759 PF06574 FAD synthetase WD_0759 PF01687 Riboflavin kinase WD_0760 PF01252 Signal peptidase (SPase) II WD_0761 PF00675 Insulinase (Peptidase family M16) WD_0761 PF05193 Peptidase M16 inactive domain WD_0763 PF00551 Formyl transferase WD_0767 PF01668 SmpB protein WD_0768 PF01790 Prolipoprotein diacylglyceryl transferase WD_0770 PF00005 ABC transporter WD_0770 PF00664 ABC transporter transmembrane region WD_0774 PF00436 Single-strand binding protein family WD_0775 PF00701 Dihydrodipicolinate synthetase family WD_0776 PF01653 NAD-dependent DNA ligase adenylation domain WD_0776 PF12826 Helix-hairpin-helix motif WD_0776 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WD_0776 PF03120 NAD-dependent DNA ligase OB-fold domain WD_0776 PF00533 BRCA1 C Terminus (BRCT) domain WD_0778 PF00749 tRNA synthetases class I (E and Q), catalytic domain WD_0780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WD_0780 PF07733 Bacterial DNA polymerase III alpha NTPase domain WD_0780 PF14579 Helix-hairpin-helix motif WD_0780 PF02811 PHP domain WD_0781 PF01250 Ribosomal protein S6 WD_0782 PF01084 Ribosomal protein S18 WD_0783 PF03948 Ribosomal protein L9, C-terminal domain WD_0783 PF01281 Ribosomal protein L9, N-terminal domain WD_0786 PF00206 Lyase WD_0786 PF10397 Adenylosuccinate lyase C-terminus WD_0787 PF13685 Iron-containing alcohol dehydrogenase WD_0788 PF01546 Peptidase family M20/M25/M40 WD_0788 PF07687 Peptidase dimerisation domain WD_0789 PF00633 Helix-hairpin-helix motif WD_0789 PF00730 HhH-GPD superfamily base excision DNA repair protein WD_0789 PF10576 Iron-sulfur binding domain of endonuclease III WD_0791 PF00180 Isocitrate/isopropylmalate dehydrogenase WD_0791 PF18324 Hypothetical protein TT1725 WD_0795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_0795 PF07498 Rho termination factor, N-terminal domain WD_0795 PF07497 Rho termination factor, RNA-binding domain WD_0797 PF00639 PPIC-type PPIASE domain WD_0798 PF00886 Ribosomal protein S16 WD_0799 PF00348 Polyprenyl synthetase WD_0800 PF01025 GrpE WD_0801 PF00579 tRNA synthetases class I (W and Y) WD_0803 PF00034 Cytochrome c WD_0813 PF03129 Anticodon binding domain WD_0813 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_0814 PF01648 4'-phosphopantetheinyl transferase superfamily WD_0816 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WD_0816 PF13244 Domain of unknown function (DUF4040) WD_0816 PF00361 Proton-conducting membrane transporter WD_0820 PF01300 Telomere recombination WD_0824 PF00270 DEAD/DEAH box helicase WD_0824 PF17191 RecG wedge domain WD_0824 PF00271 Helicase conserved C-terminal domain WD_0831 PF01145 SPFH domain / Band 7 family WD_0832 PF01145 SPFH domain / Band 7 family WD_0833 PF13180 PDZ domain WD_0839 PF04851 Type III restriction enzyme, res subunit WD_0839 PF12344 Ultra-violet resistance protein B WD_0839 PF02151 UvrB/uvrC motif WD_0839 PF17757 UvrB interaction domain WD_0839 PF00271 Helicase conserved C-terminal domain WD_0844 PF03918 Cytochrome C biogenesis protein WD_0846 PF00111 2Fe-2S iron-sulfur cluster binding domain WD_0849 PF08245 Mur ligase middle domain WD_0854 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_0855 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_0856 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_0857 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_0858 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WD_0860 PF01921 tRNA synthetases class I (K) WD_0862 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WD_0862 PF01411 tRNA synthetases class II (A) WD_0862 PF02272 DHHA1 domain WD_0864 PF01632 Ribosomal protein L35 WD_0865 PF00453 Ribosomal protein L20 WD_0866 PF02911 Formyl transferase, C-terminal domain WD_0866 PF00551 Formyl transferase WD_0867 PF01808 AICARFT/IMPCHase bienzyme WD_0867 PF02142 MGS-like domain WD_0868 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WD_0868 PF01676 Metalloenzyme superfamily WD_0869 PF00698 Acyl transferase domain WD_0870 PF01197 Ribosomal protein L31 WD_0871 PF01513 ATP-NAD kinase WD_0879 PF00085 Thioredoxin WD_0880 PF03070 TENA/THI-4/PQQC family WD_0883 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WD_0883 PF00809 Pterin binding enzyme WD_0884 PF00186 Dihydrofolate reductase WD_0887 PF18073 Rubredoxin metal binding domain WD_0888 PF02881 SRP54-type protein, helical bundle domain WD_0888 PF00448 SRP54-type protein, GTPase domain WD_0889 PF01592 NifU-like N terminal domain WD_0890 PF01521 Iron-sulphur cluster biosynthesis WD_0891 PF07743 HSCB C-terminal oligomerisation domain WD_0892 PF00012 Hsp70 protein WD_0893 PF10502 Signal peptidase, peptidase S26 WD_0895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WD_0895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WD_0904 PF01509 TruB family pseudouridylate synthase (N terminal domain) WD_0904 PF16198 tRNA pseudouridylate synthase B C-terminal domain WD_0905 PF00312 Ribosomal protein S15 WD_0906 PF03725 3' exoribonuclease family, domain 2 WD_0906 PF00575 S1 RNA binding domain WD_0906 PF01138 3' exoribonuclease family, domain 1 WD_0906 PF00013 KH domain WD_0906 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WD_0913 PF00586 AIR synthase related protein, N-terminal domain WD_0913 PF02769 AIR synthase related protein, C-terminal domain WD_0913 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WD_0916 PF17760 UvrA interaction domain WD_0916 PF17755 UvrA DNA-binding domain WD_0924 PF02875 Mur ligase family, glutamate ligase domain WD_0924 PF08245 Mur ligase middle domain WD_0925 PF01053 Cys/Met metabolism PLP-dependent enzyme WD_0928 PF00012 Hsp70 protein WD_0929 PF00575 S1 RNA binding domain WD_0929 PF10150 Ribonuclease E/G family WD_0929 PF12111 Polyribonucleotide phosphorylase C terminal WD_0930 PF00471 Ribosomal protein L33 WD_0937 PF01297 Zinc-uptake complex component A periplasmic WD_0938 PF00005 ABC transporter WD_0939 PF03109 ABC1 family WD_0948 PF00107 Zinc-binding dehydrogenase WD_0948 PF08240 Alcohol dehydrogenase GroES-like domain WD_0949 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WD_0950 PF01027 Inhibitor of apoptosis-promoting Bax1 WD_0951 PF08032 RNA 2'-O ribose methyltransferase substrate binding WD_0951 PF00588 SpoU rRNA Methylase family WD_0954 PF01118 Semialdehyde dehydrogenase, NAD binding domain WD_0954 PF02774 Semialdehyde dehydrogenase, dimerisation domain WD_0957 PF13520 Amino acid permease WD_0960 PF01842 ACT domain WD_0960 PF13840 ACT domain WD_0960 PF00696 Amino acid kinase family WD_0963 PF00580 UvrD/REP helicase N-terminal domain WD_0963 PF13361 UvrD-like helicase C-terminal domain WD_0965 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WD_0966 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WD_0967 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WD_0967 PF00361 Proton-conducting membrane transporter WD_0968 PF00361 Proton-conducting membrane transporter WD_0969 PF00361 Proton-conducting membrane transporter WD_0970 PF02237 Biotin protein ligase C terminal domain WD_0970 PF08279 HTH domain WD_0970 PF03099 Biotin/lipoate A/B protein ligase family WD_0970 PF02237 Biotin protein ligase C terminal domain WD_0970 PF03099 Biotin/lipoate A/B protein ligase family WD_0970 PF08279 HTH domain WD_0972 PF03100 CcmE WD_0976 PF10531 SLBB domain WD_0976 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WD_0976 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WD_0977 PF05198 Translation initiation factor IF-3, N-terminal domain WD_0977 PF00707 Translation initiation factor IF-3, C-terminal domain WD_0978 PF03129 Anticodon binding domain WD_0978 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_0978 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WD_0980 PF12838 4Fe-4S dicluster domain WD_0981 PF01926 50S ribosome-binding GTPase WD_0981 PF10396 GTP-binding protein TrmE N-terminus WD_0981 PF12631 MnmE helical domain WD_0982 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_0985 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WD_0985 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WD_0986 PF02504 Fatty acid synthesis protein WD_0987 PF01783 Ribosomal L32p protein family WD_0989 PF02405 Permease MlaE WD_0990 PF00005 ABC transporter WD_0992 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WD_0992 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WD_0992 PF13288 DXP reductoisomerase C-terminal domain WD_0995 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_0997 PF00266 Aminotransferase class-V WD_0998 PF01523 Putative modulator of DNA gyrase WD_1003 PF00476 DNA polymerase family A WD_1003 PF01367 5'-3' exonuclease, C-terminal SAM fold WD_1003 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WD_1008 PF01321 Creatinase/Prolidase N-terminal domain WD_1008 PF00557 Metallopeptidase family M24 WD_1009 PF13932 GidA associated domain WD_1009 PF01134 Glucose inhibited division protein A WD_1010 PF03023 Lipid II flippase MurJ WD_1012 PF04860 Phage portal protein WD_1014 PF03099 Biotin/lipoate A/B protein ligase family WD_1015 PF17676 LD-carboxypeptidase C-terminal domain WD_1015 PF02016 LD-carboxypeptidase N-terminal domain WD_1019 PF00528 Binding-protein-dependent transport system inner membrane component WD_1021 PF01245 Ribosomal protein L19 WD_1022 PF01746 tRNA (Guanine-1)-methyltransferase WD_1023 PF01259 SAICAR synthetase WD_1024 PF00586 AIR synthase related protein, N-terminal domain WD_1024 PF02769 AIR synthase related protein, C-terminal domain WD_1027 PF00571 CBS domain WD_1027 PF03471 Transporter associated domain WD_1028 PF01208 Uroporphyrinogen decarboxylase (URO-D) WD_1035 PF00464 Serine hydroxymethyltransferase WD_1042 PF01545 Cation efflux family WD_1045 PF02660 Glycerol-3-phosphate acyltransferase WD_1046 PF01235 Sodium:alanine symporter family WD_1047 PF01235 Sodium:alanine symporter family WD_1048 PF01066 CDP-alcohol phosphatidyltransferase WD_1049 PF02666 Phosphatidylserine decarboxylase WD_1050 PF00154 recA bacterial DNA recombination protein WD_1051 PF00226 DnaJ domain WD_1051 PF01556 DnaJ C terminal domain WD_1051 PF00684 DnaJ central domain WD_1052 PF08245 Mur ligase middle domain WD_1052 PF02875 Mur ligase family, glutamate ligase domain WD_1054 PF03364 Polyketide cyclase / dehydrase and lipid transport WD_1055 PF13462 Thioredoxin WD_1060 PF12169 DNA polymerase III subunits gamma and tau domain III WD_1061 PF02575 YbaB/EbfC DNA-binding family WD_1063 PF13505 Outer membrane protein beta-barrel domain WD_1064 PF04542 Sigma-70 region 2 WD_1064 PF04545 Sigma-70, region 4 WD_1064 PF00140 Sigma-70 factor, region 1.2 WD_1067 PF02767 DNA polymerase III beta subunit, central domain WD_1067 PF02768 DNA polymerase III beta subunit, C-terminal domain WD_1067 PF00712 DNA polymerase III beta subunit, N-terminal domain WD_1068 PF01416 tRNA pseudouridine synthase WD_1070 PF02167 Cytochrome C1 family WD_1070 PF00033 Cytochrome b/b6/petB WD_1070 PF00032 Cytochrome b(C-terminal)/b6/petD WD_1071 PF00032 Cytochrome b(C-terminal)/b6/petD WD_1071 PF00033 Cytochrome b/b6/petB WD_1072 PF00684 DnaJ central domain WD_1072 PF01556 DnaJ C terminal domain WD_1072 PF00226 DnaJ domain WD_1074 PF00226 DnaJ domain WD_1074 PF01556 DnaJ C terminal domain WD_1074 PF00684 DnaJ central domain WD_1076 PF03129 Anticodon binding domain WD_1076 PF13393 Histidyl-tRNA synthetase WD_1077 PF01975 Survival protein SurE WD_1080 PF00448 SRP54-type protein, GTPase domain WD_1080 PF02881 SRP54-type protein, helical bundle domain WD_1080 PF02978 Signal peptide binding domain WD_1082 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_1083 PF07977 FabA-like domain WD_1085 PF01103 Surface antigen WD_1085 PF07244 Surface antigen variable number repeat WD_1086 PF17820 PDZ domain WD_1086 PF02163 Peptidase family M50 WD_1089 PF00216 Bacterial DNA-binding protein WD_1090 PF00575 S1 RNA binding domain WD_1091 PF02390 Putative methyltransferase WD_1094 PF01258 Prokaryotic dksA/traR C4-type zinc finger WD_1098 PF01926 50S ribosome-binding GTPase WD_1098 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WD_1102 PF00953 Glycosyl transferase family 4 WD_1103 PF01351 Ribonuclease HII WD_1107 PF00361 Proton-conducting membrane transporter WD_1108 PF01098 Cell cycle protein WD_1109 PF00156 Phosphoribosyl transferase domain WD_1109 PF13537 Glutamine amidotransferase domain WD_1110 PF02245 Methylpurine-DNA glycosylase (MPG) WD_1112 PF05496 Holliday junction DNA helicase RuvB P-loop domain WD_1112 PF05491 RuvB C-terminal winged helix domain WD_1112 PF17864 RuvB AAA lid domain WD_1113 PF07499 RuvA, C-terminal domain WD_1113 PF01330 RuvA N terminal domain WD_1115 PF00579 tRNA synthetases class I (W and Y) WD_1119 PF00293 NUDIX domain WD_1120 PF01026 TatD related DNase WD_1121 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WD_1121 PF00056 lactate/malate dehydrogenase, NAD binding domain WD_1122 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WD_1123 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WD_1124 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WD_1125 PF01230 HIT domain WD_1128 PF08245 Mur ligase middle domain WD_1128 PF02875 Mur ligase family, glutamate ligase domain WD_1128 PF01225 Mur ligase family, catalytic domain WD_1129 PF01370 NAD dependent epimerase/dehydratase family WD_1129 PF08338 Domain of unknown function (DUF1731) WD_1133 PF01131 DNA topoisomerase WD_1133 PF01751 Toprim domain WD_1133 PF13368 Topoisomerase C-terminal repeat WD_1133 PF01396 Topoisomerase DNA binding C4 zinc finger WD_1136 PF00528 Binding-protein-dependent transport system inner membrane component WD_1138 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_1141 PF04379 ApaG domain WD_1142 PF02222 ATP-grasp domain WD_1142 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WD_1143 PF02542 YgbB family WD_1143 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WD_1144 PF01594 AI-2E family transporter WD_1148 PF00589 Phage integrase family WD_1148 PF02899 Phage integrase, N-terminal SAM-like domain WD_1150 PF01649 Ribosomal protein S20 WD_1151 PF00285 Citrate synthase, C-terminal domain WD_1157 PF01039 Carboxyl transferase domain WD_1158 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WD_1158 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WD_1158 PF06827 Zinc finger found in FPG and IleRS WD_1159 PF01243 Pyridoxamine 5'-phosphate oxidase WD_1159 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WD_1160 PF03772 Competence protein WD_1160 PF00753 Metallo-beta-lactamase superfamily WD_1162 PF00849 RNA pseudouridylate synthase WD_1163 PF01219 Prokaryotic diacylglycerol kinase WD_1167 PF00162 Phosphoglycerate kinase WD_1170 PF03060 Nitronate monooxygenase WD_1173 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WD_1177 PF02817 e3 binding domain WD_1177 PF00364 Biotin-requiring enzyme WD_1177 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WD_1180 PF13662 Toprim domain WD_1180 PF02132 RecR protein WD_1183 PF00334 Nucleoside diphosphate kinase WD_1186 PF00762 Ferrochelatase WD_1189 PF00227 Proteasome subunit WD_1190 PF10431 C-terminal, D2-small domain, of ClpB protein WD_1190 PF07724 AAA domain (Cdc48 subfamily) WD_1190 PF00004 ATPase family associated with various cellular activities (AAA) WD_1192 PF00348 Polyprenyl synthetase WD_1193 PF00550 Phosphopantetheine attachment site WD_1194 PF02801 Beta-ketoacyl synthase, C-terminal domain WD_1194 PF00109 Beta-ketoacyl synthase, N-terminal domain WD_1197 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WD_1198 PF02511 Thymidylate synthase complementing protein WD_1200 PF18074 Primosomal protein N C-terminal domain WD_1200 PF17764 3′ DNA-binding domain (3′BD) WD_1200 PF00271 Helicase conserved C-terminal domain WD_1200 PF00270 DEAD/DEAH box helicase WD_1200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WD_1201 PF00355 Rieske [2Fe-2S] domain WD_1201 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WD_1202 PF03989 DNA gyrase C-terminal domain, beta-propeller WD_1202 PF00521 DNA gyrase/topoisomerase IV, subunit A WD_1206 PF02632 BioY family WD_1207 PF00881 Nitroreductase family WD_1208 PF01678 Diaminopimelate epimerase WD_1209 PF02629 CoA binding domain WD_1209 PF00549 CoA-ligase WD_1210 PF00549 CoA-ligase WD_1210 PF08442 ATP-grasp domain WD_1212 PF04452 RNA methyltransferase WD_1214 PF01218 Coproporphyrinogen III oxidase WD_1216 PF00072 Response regulator receiver domain WD_1216 PF13188 PAS domain WD_1216 PF08448 PAS fold WD_1216 PF00512 His Kinase A (phospho-acceptor) domain WD_1216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WD_1217 PF13614 AAA domain WD_1218 PF17762 HTH domain found in ParB protein WD_1218 PF02195 ParB-like nuclease domain WD_1221 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WD_1222 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WD_1224 PF00483 Nucleotidyl transferase WD_1224 PF01050 Mannose-6-phosphate isomerase WD_1227 PF00483 Nucleotidyl transferase WD_1227 PF01050 Mannose-6-phosphate isomerase WD_1229 PF12704 MacB-like periplasmic core domain WD_1229 PF02687 FtsX-like permease family WD_1233 PF00231 ATP synthase WD_1234 PF01523 Putative modulator of DNA gyrase WD_1235 PF00313 'Cold-shock' DNA-binding domain WD_1236 PF00270 DEAD/DEAH box helicase WD_1236 PF00271 Helicase conserved C-terminal domain WD_1237 PF10431 C-terminal, D2-small domain, of ClpB protein WD_1237 PF00004 ATPase family associated with various cellular activities (AAA) WD_1237 PF07724 AAA domain (Cdc48 subfamily) WD_1237 PF17871 AAA lid domain WD_1237 PF02861 Clp amino terminal domain, pathogenicity island component WD_1238 PF01791 DeoC/LacD family aldolase WD_1239 PF01180 Dihydroorotate dehydrogenase WD_1240 PF00035 Double-stranded RNA binding motif WD_1240 PF14622 Ribonuclease-III-like WD_1243 PF13091 PLD-like domain WD_1247 PF00210 Ferritin-like domain WD_1249 PF02254 TrkA-N domain WD_1249 PF00999 Sodium/hydrogen exchanger family WD_1251 PF02223 Thymidylate kinase WD_1253 PF00004 ATPase family associated with various cellular activities (AAA) WD_1253 PF17862 AAA+ lid domain WD_1253 PF06480 FtsH Extracellular WD_1253 PF01434 Peptidase family M41 WD_1254 PF01171 PP-loop family WD_1255 PF00691 OmpA family WD_1263 PF00719 Inorganic pyrophosphatase WD_1266 PF00639 PPIC-type PPIASE domain WD_1266 PF09312 SurA N-terminal domain WD_1267 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_1273 PF00905 Penicillin binding protein transpeptidase domain WD_1273 PF03717 Penicillin-binding Protein dimerisation domain WD_1274 PF02401 LytB protein WD_1277 PF00183 Hsp90 protein WD_1279 PF00155 Aminotransferase class I and II WD_1281 PF01132 Elongation factor P (EF-P) OB domain WD_1281 PF08207 Elongation factor P (EF-P) KOW-like domain WD_1281 PF09285 Elongation factor P, C-terminal WD_1282 PF01782 RimM N-terminal domain WD_1282 PF05239 PRC-barrel domain WD_1283 PF00202 Aminotransferase class-III WD_1284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WD_1284 PF00512 His Kinase A (phospho-acceptor) domain WD_1284 PF00989 PAS fold WD_1285 PF00578 AhpC/TSA family WD_1286 PF02463 RecF/RecN/SMC N terminal domain WD_1292 PF03631 Virulence factor BrkB WD_1295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WD_1295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WD_1295 PF02142 MGS-like domain WD_1298 PF03979 Sigma-70 factor, region 1.1 WD_1298 PF04546 Sigma-70, non-essential region WD_1298 PF04545 Sigma-70, region 4 WD_1298 PF00140 Sigma-70 factor, region 1.2 WD_1298 PF04542 Sigma-70 region 2 WD_1298 PF04539 Sigma-70 region 3 WD_1299 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WD_1301 PF03334 Na+/H+ antiporter subunit WD_1303 PF01192 RNA polymerase Rpb6 WD_1305 PF00731 AIR carboxylase WD_1306 PF08676 MutL C terminal dimerisation domain WD_1306 PF01119 DNA mismatch repair protein, C-terminal domain WD_1309 PF00676 Dehydrogenase E1 component WD_1309 PF16078 2-oxoglutarate dehydrogenase N-terminus WD_1309 PF02779 Transketolase, pyrimidine binding domain WD_1309 PF16870 2-oxoglutarate dehydrogenase C-terminal WD_1314 PF13784 Fic/DOC family N-terminal WD_1314 PF02661 Fic/DOC family WD_1315 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WD_1316 PF01040 UbiA prenyltransferase family WD_1317 PF02033 Ribosome-binding factor A WD_1318 PF00009 Elongation factor Tu GTP binding domain WD_1318 PF11987 Translation-initiation factor 2 WD_1318 PF04760 Translation initiation factor IF-2, N-terminal region WD_1319 PF08529 NusA N-terminal domain WD_1319 PF00575 S1 RNA binding domain WD_1319 PF13184 NusA-like KH domain WD_1320 PF00873 AcrB/AcrD/AcrF family WD_1322 PF00120 Glutamine synthetase, catalytic domain