locus-tag class description wHa_00010 PF11638 DnaA N-terminal domain wHa_00010 PF08299 Bacterial dnaA protein helix-turn-helix wHa_00010 PF00308 Bacterial dnaA protein wHa_00030 PF00925 GTP cyclohydrolase II wHa_00040 PF04335 VirB8 protein wHa_00070 PF00437 Type II/IV secretion system protein wHa_00080 PF02534 Type IV secretory system Conjugative DNA transfer wHa_00100 PF13847 Methyltransferase domain wHa_00100 PF17827 PrmC N-terminal domain wHa_00110 PF00164 Ribosomal protein S12/S23 wHa_00120 PF00177 Ribosomal protein S7p/S5e wHa_00130 PF03764 Elongation factor G, domain IV wHa_00130 PF14492 Elongation Factor G, domain II wHa_00130 PF03144 Elongation factor Tu domain 2 wHa_00130 PF00009 Elongation factor Tu GTP binding domain wHa_00130 PF00679 Elongation factor G C-terminus wHa_00140 PF03144 Elongation factor Tu domain 2 wHa_00140 PF00009 Elongation factor Tu GTP binding domain wHa_00140 PF03143 Elongation factor Tu C-terminal domain wHa_00160 PF00467 KOW motif wHa_00160 PF02357 Transcription termination factor nusG wHa_00170 PF00298 Ribosomal protein L11, RNA binding domain wHa_00170 PF03946 Ribosomal protein L11, N-terminal domain wHa_00180 PF00687 Ribosomal protein L1p/L10e family wHa_00190 PF00466 Ribosomal protein L10 wHa_00210 PF00623 RNA polymerase Rpb1, domain 2 wHa_00210 PF04565 RNA polymerase Rpb2, domain 3 wHa_00210 PF04561 RNA polymerase Rpb2, domain 2 wHa_00210 PF10385 RNA polymerase beta subunit external 1 domain wHa_00210 PF04998 RNA polymerase Rpb1, domain 5 wHa_00210 PF05000 RNA polymerase Rpb1, domain 4 wHa_00210 PF00562 RNA polymerase Rpb2, domain 6 wHa_00210 PF04560 RNA polymerase Rpb2, domain 7 wHa_00210 PF04563 RNA polymerase beta subunit wHa_00210 PF04997 RNA polymerase Rpb1, domain 1 wHa_00210 PF04983 RNA polymerase Rpb1, domain 3 wHa_00220 PF01207 Dihydrouridine synthase (Dus) wHa_00240 PF02403 Seryl-tRNA synthetase N-terminal domain wHa_00240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wHa_00250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain wHa_00250 PF02843 Phosphoribosylglycinamide synthetase, C domain wHa_00250 PF02844 Phosphoribosylglycinamide synthetase, N domain wHa_00280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase wHa_00280 PF14572 Phosphoribosyl synthetase-associated domain wHa_00290 PF02686 Glu-tRNAGln amidotransferase C subunit wHa_00300 PF07676 WD40-like Beta Propeller Repeat wHa_00300 PF04052 TolB amino-terminal domain wHa_00310 PF12706 Beta-lactamase superfamily domain wHa_00310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain wHa_00310 PF17770 Ribonuclease J C-terminal domain wHa_00320 PF01556 DnaJ C terminal domain wHa_00320 PF00226 DnaJ domain wHa_00320 PF00684 DnaJ central domain wHa_00390 PF00883 Cytosol aminopeptidase family, catalytic domain wHa_00390 PF02789 Cytosol aminopeptidase family, N-terminal domain wHa_00410 PF00216 Bacterial DNA-binding protein wHa_00430 PF01551 Peptidase family M23 wHa_00440 PF08264 Anticodon-binding domain of tRNA wHa_00440 PF00133 tRNA synthetases class I (I, L, M and V) wHa_00440 PF09334 tRNA synthetases class I (M) wHa_00440 PF13603 Leucyl-tRNA synthetase, Domain 2 wHa_00470 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ wHa_00490 PF00380 Ribosomal protein S9/S16 wHa_00500 PF00572 Ribosomal protein L13 wHa_00520 PF10691 Protein of unknown function (DUF2497) wHa_00530 PF01728 FtsJ-like methyltransferase wHa_00540 PF00829 Ribosomal prokaryotic L21 protein wHa_00550 PF01016 Ribosomal L27 protein wHa_00560 PF00438 S-adenosylmethionine synthetase, N-terminal domain wHa_00560 PF02772 S-adenosylmethionine synthetase, central domain wHa_00560 PF02773 S-adenosylmethionine synthetase, C-terminal domain wHa_00570 PF03070 TENA/THI-4/PQQC family wHa_00590 PF00510 Cytochrome c oxidase subunit III wHa_00600 PF02075 Crossover junction endodeoxyribonuclease RuvC wHa_00610 PF03652 Holliday junction resolvase wHa_00620 PF02637 GatB domain wHa_00620 PF02934 GatB/GatE catalytic domain wHa_00650 PF01406 tRNA synthetases class I (C) catalytic domain wHa_00650 PF09190 DALR domain wHa_00660 PF06055 Exopolysaccharide synthesis, ExoD wHa_00680 PF02416 mttA/Hcf106 family wHa_00690 PF00005 ABC transporter wHa_00690 PF08402 TOBE domain wHa_00700 PF01541 GIY-YIG catalytic domain wHa_00700 PF02151 UvrB/uvrC motif wHa_00700 PF08459 UvrC Helix-hairpin-helix N-terminal wHa_00710 PF05746 DALR anticodon binding domain wHa_00710 PF02092 Glycyl-tRNA synthetase beta subunit wHa_00720 PF02091 Glycyl-tRNA synthetase alpha subunit wHa_00740 PF00490 Delta-aminolevulinic acid dehydratase wHa_00750 PF00146 NADH dehydrogenase wHa_00760 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal wHa_00760 PF00384 Molybdopterin oxidoreductase wHa_00760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region wHa_00780 PF03167 Uracil DNA glycosylase superfamily wHa_00790 PF01327 Polypeptide deformylase wHa_00800 PF02491 SHS2 domain inserted in FTSA wHa_00820 PF00557 Metallopeptidase family M24 wHa_00830 PF07690 Major Facilitator Superfamily wHa_00830 PF00083 Sugar (and other) transporter wHa_00840 PF01795 MraW methylase family wHa_00870 PF01386 Ribosomal L25p family wHa_00870 PF14693 Ribosomal protein TL5, C-terminal domain wHa_00880 PF01195 Peptidyl-tRNA hydrolase wHa_00900 PF01494 FAD binding domain wHa_00940 PF10609 NUBPL iron-transfer P-loop NTPase wHa_01030 PF00132 Bacterial transferase hexapeptide (six repeats) wHa_01030 PF12804 MobA-like NTP transferase domain wHa_01030 PF14602 Hexapeptide repeat of succinyl-transferase wHa_01040 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain wHa_01040 PF01409 tRNA synthetases class II core domain (F) wHa_01060 PF00677 Lumazine binding domain wHa_01110 PF02325 YGGT family wHa_01120 PF13491 4TM region of DNA translocase FtsK/SpoIIIE wHa_01120 PF01580 FtsK/SpoIIIE family wHa_01120 PF17854 FtsK alpha domain wHa_01120 PF09397 Ftsk gamma domain wHa_01160 PF04551 GcpE protein wHa_01210 PF00204 DNA gyrase B wHa_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wHa_01210 PF01751 Toprim domain wHa_01210 PF00986 DNA gyrase B subunit, carboxyl terminus wHa_01220 PF02630 SCO1/SenC wHa_01230 PF00929 Exonuclease wHa_01250 PF02556 Preprotein translocase subunit SecB wHa_01260 PF00330 Aconitase family (aconitate hydratase) wHa_01260 PF00694 Aconitase C-terminal domain wHa_01270 PF01619 Proline dehydrogenase wHa_01270 PF00171 Aldehyde dehydrogenase family wHa_01270 PF14850 DNA-binding domain of Proline dehydrogenase wHa_01270 PF18327 Proline utilization A proline dehydrogenase N-terminal domain wHa_01290 PF00893 Small Multidrug Resistance protein wHa_01300 PF00893 Small Multidrug Resistance protein wHa_01310 PF07943 Penicillin-binding protein 5, C-terminal domain wHa_01310 PF00768 D-alanyl-D-alanine carboxypeptidase wHa_01320 PF03799 Cell division protein FtsQ wHa_01320 PF08478 POTRA domain, FtsQ-type wHa_01330 PF01820 D-ala D-ala ligase N-terminus wHa_01330 PF07478 D-ala D-ala ligase C-terminus wHa_01350 PF11953 Domain of unknown function (DUF3470) wHa_01350 PF00037 4Fe-4S binding domain wHa_01360 PF02481 DNA recombination-mediator protein A wHa_01360 PF17782 DprA winged helix domain wHa_01370 PF00121 Triosephosphate isomerase wHa_01380 PF00398 Ribosomal RNA adenine dimethylase wHa_01390 PF00478 IMP dehydrogenase / GMP reductase domain wHa_01390 PF00571 CBS domain wHa_01410 PF02355 Protein export membrane protein wHa_01470 PF01121 Dephospho-CoA kinase wHa_01480 PF00570 HRDC domain wHa_01480 PF01612 3'-5' exonuclease wHa_01500 PF01624 MutS domain I wHa_01500 PF05188 MutS domain II wHa_01500 PF05192 MutS domain III wHa_01500 PF05190 MutS family domain IV wHa_01500 PF00488 MutS domain V wHa_01530 PF00571 CBS domain wHa_01530 PF03471 Transporter associated domain wHa_01530 PF03741 Integral membrane protein TerC family wHa_01540 PF02540 NAD synthase wHa_01540 PF00117 Glutamine amidotransferase class-I wHa_01540 PF00958 GMP synthase C terminal domain wHa_01550 PF02867 Ribonucleotide reductase, barrel domain wHa_01550 PF03477 ATP cone domain wHa_01550 PF00317 Ribonucleotide reductase, all-alpha domain wHa_01580 PF00468 Ribosomal protein L34 wHa_01590 PF00528 Binding-protein-dependent transport system inner membrane component wHa_01600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wHa_01600 PF02874 ATP synthase alpha/beta family, beta-barrel domain wHa_01610 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain wHa_01650 PF07690 Major Facilitator Superfamily wHa_01660 PF03462 PCRF domain wHa_01660 PF00472 RF-1 domain wHa_01670 PF01926 50S ribosome-binding GTPase wHa_01680 PF00696 Amino acid kinase family wHa_01690 PF00692 dUTPase wHa_01710 PF01029 NusB family wHa_01720 PF00885 6,7-dimethyl-8-ribityllumazine synthase wHa_01730 PF02096 60Kd inner membrane protein wHa_01730 PF14849 YidC periplasmic domain wHa_01750 PF07549 SecD/SecF GG Motif wHa_01750 PF02355 Protein export membrane protein wHa_01770 PF01578 Cytochrome C assembly protein wHa_01770 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal wHa_01790 PF01979 Amidohydrolase family wHa_01800 PF00375 Sodium:dicarboxylate symporter family wHa_01810 PF00156 Phosphoribosyl transferase domain wHa_01850 PF10431 C-terminal, D2-small domain, of ClpB protein wHa_01850 PF02861 Clp amino terminal domain, pathogenicity island component wHa_01850 PF17871 AAA lid domain wHa_01850 PF07724 AAA domain (Cdc48 subfamily) wHa_01850 PF00004 ATPase family associated with various cellular activities (AAA) wHa_01860 PF05088 Bacterial NAD-glutamate dehydrogenase wHa_01880 PF00072 Response regulator receiver domain wHa_01880 PF00990 Diguanylate cyclase, GGDEF domain wHa_01890 PF02565 Recombination protein O C terminal wHa_01890 PF11967 Recombination protein O N terminal wHa_01940 PF00268 Ribonucleotide reductase, small chain wHa_01960 PF00814 Glycoprotease family wHa_01980 PF00596 Class II Aldolase and Adducin N-terminal domain wHa_02000 PF02646 RmuC family wHa_02010 PF01609 Transposase DDE domain wHa_02060 PF00892 EamA-like transporter family wHa_02070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain wHa_02070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain wHa_02070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain wHa_02090 PF01212 Beta-eliminating lyase wHa_02100 PF01212 Beta-eliminating lyase wHa_02110 PF00664 ABC transporter transmembrane region wHa_02110 PF00005 ABC transporter wHa_02150 PF16363 GDP-mannose 4,6 dehydratase wHa_02160 PF12804 MobA-like NTP transferase domain wHa_02160 PF00132 Bacterial transferase hexapeptide (six repeats) wHa_02160 PF14602 Hexapeptide repeat of succinyl-transferase wHa_02170 PF00176 SNF2 family N-terminal domain wHa_02170 PF00271 Helicase conserved C-terminal domain wHa_02170 PF12419 SNF2 Helicase protein wHa_02200 PF01348 Type II intron maturase wHa_02200 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wHa_02230 PF01555 DNA methylase wHa_02230 PF18755 Restriction Enzyme Adenine Methylase Associated wHa_02320 PF01381 Helix-turn-helix wHa_02350 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wHa_02350 PF01348 Type II intron maturase wHa_02380 PF01555 DNA methylase wHa_02380 PF18755 Restriction Enzyme Adenine Methylase Associated wHa_02470 PF01548 Transposase wHa_02470 PF02371 Transposase IS116/IS110/IS902 family wHa_02620 PF00239 Resolvase, N terminal domain wHa_02620 PF02796 Helix-turn-helix domain of resolvase wHa_02740 PF00533 BRCA1 C Terminus (BRCT) domain wHa_02740 PF12826 Helix-hairpin-helix motif wHa_02740 PF01653 NAD-dependent DNA ligase adenylation domain wHa_02740 PF03120 NAD-dependent DNA ligase OB-fold domain wHa_02760 PF01609 Transposase DDE domain wHa_02790 PF01425 Amidase wHa_02800 PF04055 Radical SAM superfamily wHa_02800 PF00919 Uncharacterized protein family UPF0004 wHa_02840 PF03330 Lytic transglycolase wHa_02850 PF02875 Mur ligase family, glutamate ligase domain wHa_02850 PF08245 Mur ligase middle domain wHa_02850 PF01225 Mur ligase family, catalytic domain wHa_02860 PF03952 Enolase, N-terminal domain wHa_02860 PF00113 Enolase, C-terminal TIM barrel domain wHa_02870 PF01018 GTP1/OBG wHa_02870 PF01926 50S ribosome-binding GTPase wHa_02880 PF00206 Lyase wHa_02880 PF10415 Fumarase C C-terminus wHa_02890 PF00462 Glutaredoxin wHa_02920 PF00390 Malic enzyme, N-terminal domain wHa_02920 PF03949 Malic enzyme, NAD binding domain wHa_02920 PF01515 Phosphate acetyl/butaryl transferase wHa_02930 PF01066 CDP-alcohol phosphatidyltransferase wHa_02950 PF13525 Outer membrane lipoprotein wHa_02960 PF01709 Transcriptional regulator wHa_02970 PF01476 LysM domain wHa_02970 PF01551 Peptidase family M23 wHa_02970 PF08525 Opacity-associated protein A N-terminal motif wHa_03030 PF06421 GTP-binding protein LepA C-terminus wHa_03030 PF03144 Elongation factor Tu domain 2 wHa_03030 PF00009 Elongation factor Tu GTP binding domain wHa_03030 PF00679 Elongation factor G C-terminus wHa_03030 PF14492 Elongation Factor G, domain II wHa_03060 PF00364 Biotin-requiring enzyme wHa_03060 PF02779 Transketolase, pyrimidine binding domain wHa_03060 PF02780 Transketolase, C-terminal domain wHa_03070 PF01434 Peptidase family M41 wHa_03070 PF00004 ATPase family associated with various cellular activities (AAA) wHa_03070 PF17862 AAA+ lid domain wHa_03070 PF06480 FtsH Extracellular wHa_03090 PF07690 Major Facilitator Superfamily wHa_03090 PF00083 Sugar (and other) transporter wHa_03100 PF14437 MafB19-like deaminase wHa_03110 PF06418 CTP synthase N-terminus wHa_03110 PF00117 Glutamine amidotransferase class-I wHa_03150 PF08264 Anticodon-binding domain of tRNA wHa_03150 PF00133 tRNA synthetases class I (I, L, M and V) wHa_03190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family wHa_03220 PF00005 ABC transporter wHa_03230 PF00528 Binding-protein-dependent transport system inner membrane component wHa_03240 PF00497 Bacterial extracellular solute-binding proteins, family 3 wHa_03250 PF02863 Arginine repressor, C-terminal domain wHa_03250 PF01316 Arginine repressor, DNA binding domain wHa_03260 PF00902 Sec-independent protein translocase protein (TatC) wHa_03270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain wHa_03270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain wHa_03310 PF12627 Probable RNA and SrmB- binding site of polymerase A wHa_03310 PF13735 tRNA nucleotidyltransferase domain 2 putative wHa_03310 PF01743 Poly A polymerase head domain wHa_03330 PF01926 50S ribosome-binding GTPase wHa_03330 PF06071 Protein of unknown function (DUF933) wHa_03360 PF00625 Guanylate kinase wHa_03380 PF00890 FAD binding domain wHa_03380 PF02910 Fumarate reductase flavoprotein C-term wHa_03600 PF01555 DNA methylase wHa_03740 PF17482 Phage tail sheath C-terminal domain wHa_03740 PF04984 Phage tail sheath protein subtilisin-like domain wHa_03870 PF08676 MutL C terminal dimerisation domain wHa_03870 PF01119 DNA mismatch repair protein, C-terminal domain wHa_03920 PF02810 SEC-C motif wHa_03920 PF07517 SecA DEAD-like domain wHa_03920 PF01043 SecA preprotein cross-linking domain wHa_03920 PF07516 SecA Wing and Scaffold domain wHa_03940 PF00749 tRNA synthetases class I (E and Q), catalytic domain wHa_03960 PF00289 Biotin carboxylase, N-terminal domain wHa_03960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain wHa_03960 PF02785 Biotin carboxylase C-terminal domain wHa_03970 PF02628 Cytochrome oxidase assembly protein wHa_04010 PF00137 ATP synthase subunit C wHa_04020 PF00119 ATP synthase A chain wHa_04040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain wHa_04040 PF03483 B3/4 domain wHa_04040 PF01588 Putative tRNA binding domain wHa_04040 PF03147 Ferredoxin-fold anticodon binding domain wHa_04040 PF03484 tRNA synthetase B5 domain wHa_04060 PF00133 tRNA synthetases class I (I, L, M and V) wHa_04060 PF08264 Anticodon-binding domain of tRNA wHa_04070 PF00854 POT family wHa_04080 PF01938 TRAM domain wHa_04080 PF00919 Uncharacterized protein family UPF0004 wHa_04080 PF04055 Radical SAM superfamily wHa_04100 PF00676 Dehydrogenase E1 component wHa_04110 PF01479 S4 domain wHa_04110 PF00849 RNA pseudouridylate synthase wHa_04120 PF08946 Osmosensory transporter coiled coil wHa_04120 PF00083 Sugar (and other) transporter wHa_04130 PF01336 OB-fold nucleic acid binding domain wHa_04130 PF02938 GAD domain wHa_04130 PF00152 tRNA synthetases class II (D, K and N) wHa_04150 PF00005 ABC transporter wHa_04200 PF01467 Cytidylyltransferase-like wHa_04230 PF01255 Putative undecaprenyl diphosphate synthase wHa_04240 PF01765 Ribosome recycling factor wHa_04250 PF00696 Amino acid kinase family wHa_04260 PF00889 Elongation factor TS wHa_04270 PF00318 Ribosomal protein S2 wHa_04280 PF02699 Preprotein translocase subunit wHa_04290 PF01380 SIS domain wHa_04310 PF01565 FAD binding domain wHa_04310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain wHa_04320 PF03900 Porphobilinogen deaminase, C-terminal domain wHa_04320 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain wHa_04330 PF02817 e3 binding domain wHa_04330 PF00364 Biotin-requiring enzyme wHa_04330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) wHa_04350 PF01043 SecA preprotein cross-linking domain wHa_04350 PF02810 SEC-C motif wHa_04350 PF07516 SecA Wing and Scaffold domain wHa_04350 PF07517 SecA DEAD-like domain wHa_04370 PF00923 Transaldolase/Fructose-6-phosphate aldolase wHa_04440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain wHa_04440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain wHa_04450 PF02441 Flavoprotein wHa_04460 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) wHa_04470 PF01595 Cyclin M transmembrane N-terminal domain wHa_04470 PF00571 CBS domain wHa_04470 PF03471 Transporter associated domain wHa_04480 PF00202 Aminotransferase class-III wHa_04490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit wHa_04510 PF00750 tRNA synthetases class I (R) wHa_04510 PF05746 DALR anticodon binding domain wHa_04510 PF03485 Arginyl tRNA synthetase N terminal domain wHa_04550 PF00005 ABC transporter wHa_04550 PF00664 ABC transporter transmembrane region wHa_04570 PF01098 Cell cycle protein wHa_04580 PF01209 ubiE/COQ5 methyltransferase family wHa_04590 PF04055 Radical SAM superfamily wHa_04590 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family wHa_04600 PF00830 Ribosomal L28 family wHa_04620 PF04384 Iron-sulphur cluster assembly wHa_04630 PF00163 Ribosomal protein S4/S9 N-terminal domain wHa_04630 PF01479 S4 domain wHa_04640 PF02779 Transketolase, pyrimidine binding domain wHa_04640 PF00456 Transketolase, thiamine diphosphate binding domain wHa_04640 PF02780 Transketolase, C-terminal domain wHa_04660 PF07690 Major Facilitator Superfamily wHa_04700 PF00692 dUTPase wHa_04730 PF02386 Cation transport protein wHa_04740 PF03448 MgtE intracellular N domain wHa_04740 PF01769 Divalent cation transporter wHa_04740 PF00571 CBS domain wHa_04750 PF00472 RF-1 domain wHa_04750 PF03462 PCRF domain wHa_04770 PF00005 ABC transporter wHa_04780 PF01113 Dihydrodipicolinate reductase, N-terminus wHa_04780 PF05173 Dihydrodipicolinate reductase, C-terminus wHa_04820 PF00950 ABC 3 transport family wHa_04840 PF08544 GHMP kinases C terminal wHa_04840 PF00288 GHMP kinases N terminal domain wHa_04850 PF00580 UvrD/REP helicase N-terminal domain wHa_04850 PF13361 UvrD-like helicase C-terminal domain wHa_04850 PF12705 PD-(D/E)XK nuclease superfamily wHa_04860 PF04002 RadC-like JAB domain wHa_04870 PF06271 RDD family wHa_04880 PF00772 DnaB-like helicase N terminal domain wHa_04880 PF03796 DnaB-like helicase C terminal domain wHa_04910 PF09334 tRNA synthetases class I (M) wHa_04910 PF08264 Anticodon-binding domain of tRNA wHa_04930 PF08241 Methyltransferase domain wHa_04940 PF13662 Toprim domain wHa_04940 PF08275 DNA primase catalytic core, N-terminal domain wHa_04940 PF01807 CHC2 zinc finger wHa_04950 PF02661 Fic/DOC family wHa_04950 PF13784 Fic/DOC family N-terminal wHa_04990 PF00444 Ribosomal protein L36 wHa_05000 PF03618 Kinase/pyrophosphorylase wHa_05010 PF01578 Cytochrome C assembly protein wHa_05040 PF00709 Adenylosuccinate synthetase wHa_05070 PF01176 Translation initiation factor 1A / IF-1 wHa_05080 PF02545 Maf-like protein wHa_05100 PF01235 Sodium:alanine symporter family wHa_05130 PF00118 TCP-1/cpn60 chaperonin family wHa_05140 PF00166 Chaperonin 10 Kd subunit wHa_05150 PF01571 Aminomethyltransferase folate-binding domain wHa_05160 PF01368 DHH family wHa_05160 PF02272 DHHA1 domain wHa_05160 PF17768 RecJ OB domain wHa_05170 PF00115 Cytochrome C and Quinol oxidase polypeptide I wHa_05190 PF00004 ATPase family associated with various cellular activities (AAA) wHa_05190 PF02190 ATP-dependent protease La (LON) substrate-binding domain wHa_05190 PF05362 Lon protease (S16) C-terminal proteolytic domain wHa_05200 PF07724 AAA domain (Cdc48 subfamily) wHa_05200 PF10431 C-terminal, D2-small domain, of ClpB protein wHa_05200 PF06689 ClpX C4-type zinc finger wHa_05210 PF00574 Clp protease wHa_05220 PF05698 Bacterial trigger factor protein (TF) C-terminus wHa_05220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase wHa_05220 PF05697 Bacterial trigger factor protein (TF) wHa_05230 PF04972 BON domain wHa_05240 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain wHa_05240 PF02951 Prokaryotic glutathione synthetase, N-terminal domain wHa_05250 PF04101 Glycosyltransferase family 28 C-terminal domain wHa_05250 PF03033 Glycosyltransferase family 28 N-terminal domain wHa_05270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain wHa_05270 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_05320 PF00075 RNase H wHa_05330 PF01040 UbiA prenyltransferase family wHa_05340 PF00115 Cytochrome C and Quinol oxidase polypeptide I wHa_05350 PF00116 Cytochrome C oxidase subunit II, periplasmic domain wHa_05350 PF02790 Cytochrome C oxidase subunit II, transmembrane domain wHa_05460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion wHa_05460 PF00529 HlyD membrane-fusion protein of T1SS wHa_05500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase wHa_05500 PF00925 GTP cyclohydrolase II wHa_05510 PF01272 Transcription elongation factor, GreA/GreB, C-term wHa_05510 PF03449 Transcription elongation factor, N-terminal wHa_05520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wHa_05520 PF00306 ATP synthase alpha/beta chain, C terminal domain wHa_05520 PF02874 ATP synthase alpha/beta family, beta-barrel domain wHa_05530 PF00213 ATP synthase delta (OSCP) subunit wHa_05540 PF02021 Uncharacterised protein family UPF0102 wHa_05550 PF01196 Ribosomal protein L17 wHa_05560 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain wHa_05560 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain wHa_05560 PF01000 RNA polymerase Rpb3/RpoA insert domain wHa_05570 PF00411 Ribosomal protein S11 wHa_05580 PF00416 Ribosomal protein S13/S18 wHa_05600 PF00344 SecY translocase wHa_05610 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A wHa_05620 PF03719 Ribosomal protein S5, C-terminal domain wHa_05620 PF00333 Ribosomal protein S5, N-terminal domain wHa_05630 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast wHa_05640 PF00347 Ribosomal protein L6 wHa_05650 PF00410 Ribosomal protein S8 wHa_05660 PF00253 Ribosomal protein S14p/S29e wHa_05670 PF00673 ribosomal L5P family C-terminus wHa_05670 PF00281 Ribosomal protein L5 wHa_05680 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 wHa_05690 PF00238 Ribosomal protein L14p/L23e wHa_05700 PF00366 Ribosomal protein S17 wHa_05710 PF00831 Ribosomal L29 protein wHa_05720 PF00252 Ribosomal protein L16p/L10e wHa_05730 PF07650 KH domain wHa_05730 PF00189 Ribosomal protein S3, C-terminal domain wHa_05740 PF00237 Ribosomal protein L22p/L17e wHa_05750 PF00203 Ribosomal protein S19 wHa_05760 PF03947 Ribosomal Proteins L2, C-terminal domain wHa_05760 PF00181 Ribosomal Proteins L2, RNA binding domain wHa_05770 PF00276 Ribosomal protein L23 wHa_05780 PF00573 Ribosomal protein L4/L1 family wHa_05790 PF00297 Ribosomal protein L3 wHa_05800 PF00338 Ribosomal protein S10p/S20e wHa_05810 PF03143 Elongation factor Tu C-terminal domain wHa_05810 PF03144 Elongation factor Tu domain 2 wHa_05810 PF00009 Elongation factor Tu GTP binding domain wHa_05820 PF00117 Glutamine amidotransferase class-I wHa_05820 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain wHa_05850 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded wHa_05870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain wHa_05870 PF00391 PEP-utilising enzyme, mobile domain wHa_05870 PF02896 PEP-utilising enzyme, TIM barrel domain wHa_05890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain wHa_05890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III wHa_05890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II wHa_05890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I wHa_05930 PF00814 Glycoprotease family wHa_05950 PF00266 Aminotransferase class-V wHa_05960 PF02129 X-Pro dipeptidyl-peptidase (S15 family) wHa_05980 PF00005 ABC transporter wHa_05990 PF01521 Iron-sulphur cluster biosynthesis wHa_06000 PF13286 Phosphohydrolase-associated domain wHa_06000 PF01966 HD domain wHa_06010 PF01872 RibD C-terminal domain wHa_06010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region wHa_06030 PF00834 Ribulose-phosphate 3 epimerase family wHa_06050 PF00132 Bacterial transferase hexapeptide (six repeats) wHa_06050 PF14602 Hexapeptide repeat of succinyl-transferase wHa_06050 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal wHa_06100 PF00905 Penicillin binding protein transpeptidase domain wHa_06100 PF03717 Penicillin-binding Protein dimerisation domain wHa_06110 PF03422 Carbohydrate binding module (family 6) wHa_06110 PF00457 Glycosyl hydrolases family 11 wHa_06110 PF01522 Polysaccharide deacetylase wHa_06120 PF01078 Magnesium chelatase, subunit ChlI wHa_06120 PF13335 Magnesium chelatase, subunit ChlI C-terminal wHa_06140 PF00091 Tubulin/FtsZ family, GTPase domain wHa_06140 PF12327 FtsZ family, C-terminal domain wHa_06160 PF02130 Uncharacterized protein family UPF0054 wHa_06170 PF13085 2Fe-2S iron-sulfur cluster binding domain wHa_06190 PF04608 Phosphatidylglycerophosphatase A wHa_06200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus wHa_06200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus wHa_06210 PF00072 Response regulator receiver domain wHa_06210 PF00486 Transcriptional regulatory protein, C terminal wHa_06240 PF01702 Queuine tRNA-ribosyltransferase wHa_06260 PF05193 Peptidase M16 inactive domain wHa_06260 PF00675 Insulinase (Peptidase family M16) wHa_06270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain wHa_06270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain wHa_06280 PF01654 Cytochrome bd terminal oxidase subunit I wHa_06290 PF02322 Cytochrome bd terminal oxidase subunit II wHa_06310 PF01926 50S ribosome-binding GTPase wHa_06310 PF07650 KH domain wHa_06370 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_06370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain wHa_06380 PF00589 Phage integrase family wHa_06380 PF02899 Phage integrase, N-terminal SAM-like domain wHa_06400 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_06410 PF00578 AhpC/TSA family wHa_06410 PF10417 C-terminal domain of 1-Cys peroxiredoxin wHa_06430 PF00462 Glutaredoxin wHa_06440 PF06574 FAD synthetase wHa_06440 PF01687 Riboflavin kinase wHa_06450 PF01252 Signal peptidase (SPase) II wHa_06460 PF00675 Insulinase (Peptidase family M16) wHa_06460 PF05193 Peptidase M16 inactive domain wHa_06480 PF00551 Formyl transferase wHa_06520 PF01668 SmpB protein wHa_06530 PF01790 Prolipoprotein diacylglyceryl transferase wHa_06540 PF00005 ABC transporter wHa_06540 PF00664 ABC transporter transmembrane region wHa_06580 PF00436 Single-strand binding protein family wHa_06590 PF00701 Dihydrodipicolinate synthetase family wHa_06600 PF01653 NAD-dependent DNA ligase adenylation domain wHa_06600 PF03120 NAD-dependent DNA ligase OB-fold domain wHa_06600 PF12826 Helix-hairpin-helix motif wHa_06600 PF00533 BRCA1 C Terminus (BRCT) domain wHa_06600 PF03119 NAD-dependent DNA ligase C4 zinc finger domain wHa_06610 PF00749 tRNA synthetases class I (E and Q), catalytic domain wHa_06620 PF02811 PHP domain wHa_06620 PF14579 Helix-hairpin-helix motif wHa_06620 PF07733 Bacterial DNA polymerase III alpha NTPase domain wHa_06620 PF17657 Bacterial DNA polymerase III alpha subunit finger domain wHa_06630 PF01250 Ribosomal protein S6 wHa_06640 PF01084 Ribosomal protein S18 wHa_06650 PF01281 Ribosomal protein L9, N-terminal domain wHa_06650 PF03948 Ribosomal protein L9, C-terminal domain wHa_06660 PF10397 Adenylosuccinate lyase C-terminus wHa_06660 PF00206 Lyase wHa_06670 PF13685 Iron-containing alcohol dehydrogenase wHa_06680 PF07687 Peptidase dimerisation domain wHa_06680 PF01546 Peptidase family M20/M25/M40 wHa_06690 PF10576 Iron-sulfur binding domain of endonuclease III wHa_06690 PF00633 Helix-hairpin-helix motif wHa_06690 PF00730 HhH-GPD superfamily base excision DNA repair protein wHa_06700 PF18324 Hypothetical protein TT1725 wHa_06700 PF00180 Isocitrate/isopropylmalate dehydrogenase wHa_06730 PF07497 Rho termination factor, RNA-binding domain wHa_06730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wHa_06730 PF07498 Rho termination factor, N-terminal domain wHa_06750 PF00639 PPIC-type PPIASE domain wHa_06760 PF00886 Ribosomal protein S16 wHa_06770 PF00348 Polyprenyl synthetase wHa_06780 PF01025 GrpE wHa_06790 PF00579 tRNA synthetases class I (W and Y) wHa_06810 PF00034 Cytochrome c wHa_06850 PF01609 Transposase DDE domain wHa_06860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wHa_06860 PF03129 Anticodon binding domain wHa_06870 PF01648 4'-phosphopantetheinyl transferase superfamily wHa_06880 PF13244 Domain of unknown function (DUF4040) wHa_06880 PF00361 Proton-conducting membrane transporter wHa_06880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wHa_06920 PF01300 Telomere recombination wHa_06960 PF00271 Helicase conserved C-terminal domain wHa_06960 PF00270 DEAD/DEAH box helicase wHa_06960 PF17191 RecG wedge domain wHa_07030 PF01145 SPFH domain / Band 7 family wHa_07040 PF01145 SPFH domain / Band 7 family wHa_07050 PF13180 PDZ domain wHa_07140 PF12344 Ultra-violet resistance protein B wHa_07140 PF02151 UvrB/uvrC motif wHa_07140 PF17757 UvrB interaction domain wHa_07140 PF04851 Type III restriction enzyme, res subunit wHa_07140 PF00271 Helicase conserved C-terminal domain wHa_07180 PF18073 Rubredoxin metal binding domain wHa_07190 PF02881 SRP54-type protein, helical bundle domain wHa_07190 PF00448 SRP54-type protein, GTPase domain wHa_07200 PF01592 NifU-like N terminal domain wHa_07210 PF01521 Iron-sulphur cluster biosynthesis wHa_07220 PF00226 DnaJ domain wHa_07220 PF07743 HSCB C-terminal oligomerisation domain wHa_07230 PF00012 Hsp70 protein wHa_07240 PF10502 Signal peptidase, peptidase S26 wHa_07250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain wHa_07250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain wHa_07310 PF08245 Mur ligase middle domain wHa_07360 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wHa_07370 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wHa_07380 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wHa_07390 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wHa_07400 PF03135 CagE, TrbE, VirB family, component of type IV transporter system wHa_07420 PF01921 tRNA synthetases class I (K) wHa_07430 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain wHa_07430 PF02272 DHHA1 domain wHa_07430 PF01411 tRNA synthetases class II (A) wHa_07450 PF01632 Ribosomal protein L35 wHa_07460 PF00453 Ribosomal protein L20 wHa_07470 PF00551 Formyl transferase wHa_07470 PF02911 Formyl transferase, C-terminal domain wHa_07480 PF02142 MGS-like domain wHa_07480 PF01808 AICARFT/IMPCHase bienzyme wHa_07490 PF01676 Metalloenzyme superfamily wHa_07490 PF06415 BPG-independent PGAM N-terminus (iPGM_N) wHa_07500 PF00698 Acyl transferase domain wHa_07510 PF01197 Ribosomal protein L31 wHa_07520 PF01513 ATP-NAD kinase wHa_07550 PF00013 KH domain wHa_07550 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain wHa_07550 PF01138 3' exoribonuclease family, domain 1 wHa_07550 PF03725 3' exoribonuclease family, domain 2 wHa_07550 PF00575 S1 RNA binding domain wHa_07560 PF00312 Ribosomal protein S15 wHa_07570 PF01509 TruB family pseudouridylate synthase (N terminal domain) wHa_07570 PF16198 tRNA pseudouridylate synthase B C-terminal domain wHa_07580 PF00111 2Fe-2S iron-sulfur cluster binding domain wHa_07600 PF03918 Cytochrome C biogenesis protein wHa_07630 PF00186 Dihydrofolate reductase wHa_07640 PF00809 Pterin binding enzyme wHa_07640 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) wHa_07650 PF00809 Pterin binding enzyme wHa_07650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) wHa_07670 PF03070 TENA/THI-4/PQQC family wHa_07680 PF00085 Thioredoxin wHa_07720 PF00586 AIR synthase related protein, N-terminal domain wHa_07720 PF02769 AIR synthase related protein, C-terminal domain wHa_07720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain wHa_07740 PF17760 UvrA interaction domain wHa_07740 PF17755 UvrA DNA-binding domain wHa_07770 PF08245 Mur ligase middle domain wHa_07770 PF02875 Mur ligase family, glutamate ligase domain wHa_07780 PF01053 Cys/Met metabolism PLP-dependent enzyme wHa_07800 PF00012 Hsp70 protein wHa_07810 PF12111 Polyribonucleotide phosphorylase C terminal wHa_07810 PF00575 S1 RNA binding domain wHa_07810 PF10150 Ribonuclease E/G family wHa_07820 PF00471 Ribosomal protein L33 wHa_07840 PF01297 Zinc-uptake complex component A periplasmic wHa_07850 PF00005 ABC transporter wHa_07860 PF03109 ABC1 family wHa_07910 PF00107 Zinc-binding dehydrogenase wHa_07910 PF08240 Alcohol dehydrogenase GroES-like domain wHa_07930 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 wHa_07940 PF01027 Inhibitor of apoptosis-promoting Bax1 wHa_07950 PF00588 SpoU rRNA Methylase family wHa_07950 PF08032 RNA 2'-O ribose methyltransferase substrate binding wHa_07970 PF01118 Semialdehyde dehydrogenase, NAD binding domain wHa_07970 PF02774 Semialdehyde dehydrogenase, dimerisation domain wHa_08000 PF13520 Amino acid permease wHa_08020 PF00696 Amino acid kinase family wHa_08020 PF01842 ACT domain wHa_08020 PF13840 ACT domain wHa_08050 PF00580 UvrD/REP helicase N-terminal domain wHa_08050 PF13361 UvrD-like helicase C-terminal domain wHa_08070 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 wHa_08080 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L wHa_08090 PF00361 Proton-conducting membrane transporter wHa_08090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wHa_08100 PF00361 Proton-conducting membrane transporter wHa_08110 PF00361 Proton-conducting membrane transporter wHa_08120 PF03099 Biotin/lipoate A/B protein ligase family wHa_08120 PF08279 HTH domain wHa_08120 PF02237 Biotin protein ligase C terminal domain wHa_08130 PF03100 CcmE wHa_08170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit wHa_08170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region wHa_08170 PF10531 SLBB domain wHa_08180 PF00707 Translation initiation factor IF-3, C-terminal domain wHa_08180 PF05198 Translation initiation factor IF-3, N-terminal domain wHa_08190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wHa_08190 PF03129 Anticodon binding domain wHa_08190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain wHa_08200 PF12838 4Fe-4S dicluster domain wHa_08210 PF01926 50S ribosome-binding GTPase wHa_08210 PF12631 MnmE helical domain wHa_08210 PF10396 GTP-binding protein TrmE N-terminus wHa_08220 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_08230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III wHa_08230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal wHa_08240 PF02504 Fatty acid synthesis protein wHa_08250 PF01783 Ribosomal L32p protein family wHa_08260 PF02405 Permease MlaE wHa_08270 PF00005 ABC transporter wHa_08290 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain wHa_08290 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase wHa_08290 PF13288 DXP reductoisomerase C-terminal domain wHa_08310 PF00266 Aminotransferase class-V wHa_08320 PF01523 Putative modulator of DNA gyrase wHa_08370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain wHa_08370 PF01367 5'-3' exonuclease, C-terminal SAM fold wHa_08370 PF00476 DNA polymerase family A wHa_08420 PF00557 Metallopeptidase family M24 wHa_08420 PF01321 Creatinase/Prolidase N-terminal domain wHa_08430 PF13932 GidA associated domain wHa_08430 PF01134 Glucose inhibited division protein A wHa_08440 PF03023 Lipid II flippase MurJ wHa_08460 PF04860 Phage portal protein wHa_08490 PF03099 Biotin/lipoate A/B protein ligase family wHa_08500 PF02016 LD-carboxypeptidase N-terminal domain wHa_08500 PF17676 LD-carboxypeptidase C-terminal domain wHa_08530 PF00528 Binding-protein-dependent transport system inner membrane component wHa_08540 PF01245 Ribosomal protein L19 wHa_08550 PF01746 tRNA (Guanine-1)-methyltransferase wHa_08560 PF01259 SAICAR synthetase wHa_08570 PF02769 AIR synthase related protein, C-terminal domain wHa_08570 PF00586 AIR synthase related protein, N-terminal domain wHa_08600 PF00571 CBS domain wHa_08600 PF03471 Transporter associated domain wHa_08610 PF01208 Uroporphyrinogen decarboxylase (URO-D) wHa_08640 PF07690 Major Facilitator Superfamily wHa_08660 PF00464 Serine hydroxymethyltransferase wHa_08690 PF01545 Cation efflux family wHa_08710 PF02660 Glycerol-3-phosphate acyltransferase wHa_08720 PF01235 Sodium:alanine symporter family wHa_08730 PF01235 Sodium:alanine symporter family wHa_08740 PF01066 CDP-alcohol phosphatidyltransferase wHa_08750 PF02666 Phosphatidylserine decarboxylase wHa_08760 PF00154 recA bacterial DNA recombination protein wHa_08770 PF01556 DnaJ C terminal domain wHa_08770 PF00684 DnaJ central domain wHa_08770 PF00226 DnaJ domain wHa_08780 PF08245 Mur ligase middle domain wHa_08780 PF02875 Mur ligase family, glutamate ligase domain wHa_08800 PF03364 Polyketide cyclase / dehydrase and lipid transport wHa_08810 PF13462 Thioredoxin wHa_08850 PF12169 DNA polymerase III subunits gamma and tau domain III wHa_08860 PF02575 YbaB/EbfC DNA-binding family wHa_08880 PF13505 Outer membrane protein beta-barrel domain wHa_08890 PF00140 Sigma-70 factor, region 1.2 wHa_08890 PF04542 Sigma-70 region 2 wHa_08890 PF04545 Sigma-70, region 4 wHa_08910 PF02768 DNA polymerase III beta subunit, C-terminal domain wHa_08910 PF00712 DNA polymerase III beta subunit, N-terminal domain wHa_08910 PF02767 DNA polymerase III beta subunit, central domain wHa_08920 PF01416 tRNA pseudouridine synthase wHa_08940 PF00032 Cytochrome b(C-terminal)/b6/petD wHa_08940 PF02167 Cytochrome C1 family wHa_08940 PF00033 Cytochrome b/b6/petB wHa_08950 PF00033 Cytochrome b/b6/petB wHa_08950 PF00032 Cytochrome b(C-terminal)/b6/petD wHa_08970 PF00226 DnaJ domain wHa_08970 PF01556 DnaJ C terminal domain wHa_08970 PF00684 DnaJ central domain wHa_08990 PF03129 Anticodon binding domain wHa_08990 PF13393 Histidyl-tRNA synthetase wHa_09000 PF01975 Survival protein SurE wHa_09010 PF02881 SRP54-type protein, helical bundle domain wHa_09010 PF00448 SRP54-type protein, GTPase domain wHa_09010 PF02978 Signal peptide binding domain wHa_09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_09040 PF07977 FabA-like domain wHa_09060 PF07244 Surface antigen variable number repeat wHa_09060 PF01103 Surface antigen wHa_09070 PF17820 PDZ domain wHa_09070 PF02163 Peptidase family M50 wHa_09100 PF00216 Bacterial DNA-binding protein wHa_09110 PF00575 S1 RNA binding domain wHa_09120 PF02390 Putative methyltransferase wHa_09140 PF01258 Prokaryotic dksA/traR C4-type zinc finger wHa_09170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal wHa_09170 PF01926 50S ribosome-binding GTPase wHa_09210 PF00953 Glycosyl transferase family 4 wHa_09220 PF01351 Ribonuclease HII wHa_09260 PF00361 Proton-conducting membrane transporter wHa_09270 PF01098 Cell cycle protein wHa_09280 PF13537 Glutamine amidotransferase domain wHa_09280 PF00156 Phosphoribosyl transferase domain wHa_09290 PF02245 Methylpurine-DNA glycosylase (MPG) wHa_09310 PF05491 RuvB C-terminal winged helix domain wHa_09310 PF17864 RuvB AAA lid domain wHa_09310 PF05496 Holliday junction DNA helicase RuvB P-loop domain wHa_09320 PF01330 RuvA N terminal domain wHa_09320 PF07499 RuvA, C-terminal domain wHa_09340 PF00579 tRNA synthetases class I (W and Y) wHa_09370 PF00293 NUDIX domain wHa_09380 PF01026 TatD related DNase wHa_09390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain wHa_09390 PF00056 lactate/malate dehydrogenase, NAD binding domain wHa_09400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit wHa_09410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit wHa_09420 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 wHa_09430 PF01230 HIT domain wHa_09460 PF01225 Mur ligase family, catalytic domain wHa_09460 PF02875 Mur ligase family, glutamate ligase domain wHa_09460 PF08245 Mur ligase middle domain wHa_09470 PF08338 Domain of unknown function (DUF1731) wHa_09470 PF01370 NAD dependent epimerase/dehydratase family wHa_09490 PF01751 Toprim domain wHa_09490 PF01396 Topoisomerase DNA binding C4 zinc finger wHa_09490 PF13368 Topoisomerase C-terminal repeat wHa_09490 PF01131 DNA topoisomerase wHa_09520 PF00528 Binding-protein-dependent transport system inner membrane component wHa_09540 PF04379 ApaG domain wHa_09550 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain wHa_09550 PF02222 ATP-grasp domain wHa_09560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase wHa_09560 PF02542 YgbB family wHa_09570 PF01594 AI-2E family transporter wHa_09600 PF02899 Phage integrase, N-terminal SAM-like domain wHa_09600 PF00589 Phage integrase family wHa_09620 PF01649 Ribosomal protein S20 wHa_09630 PF00285 Citrate synthase, C-terminal domain wHa_09660 PF01039 Carboxyl transferase domain wHa_09670 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain wHa_09670 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain wHa_09670 PF06827 Zinc finger found in FPG and IleRS wHa_09680 PF01243 Pyridoxamine 5'-phosphate oxidase wHa_09680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region wHa_09690 PF00753 Metallo-beta-lactamase superfamily wHa_09690 PF03772 Competence protein wHa_09710 PF00849 RNA pseudouridylate synthase wHa_09720 PF01219 Prokaryotic diacylglycerol kinase wHa_09740 PF00162 Phosphoglycerate kinase wHa_09760 PF03060 Nitronate monooxygenase wHa_09790 PF03135 CagE, TrbE, VirB family, component of type IV transporter system wHa_09830 PF00364 Biotin-requiring enzyme wHa_09830 PF02817 e3 binding domain wHa_09830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) wHa_09860 PF02132 RecR protein wHa_09860 PF13662 Toprim domain wHa_09870 PF00334 Nucleoside diphosphate kinase wHa_09890 PF00762 Ferrochelatase wHa_09920 PF00227 Proteasome subunit wHa_09930 PF10431 C-terminal, D2-small domain, of ClpB protein wHa_09930 PF07724 AAA domain (Cdc48 subfamily) wHa_09930 PF00004 ATPase family associated with various cellular activities (AAA) wHa_09950 PF00348 Polyprenyl synthetase wHa_09960 PF00550 Phosphopantetheine attachment site wHa_09970 PF00109 Beta-ketoacyl synthase, N-terminal domain wHa_09970 PF02801 Beta-ketoacyl synthase, C-terminal domain wHa_09990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) wHa_10000 PF02511 Thymidylate synthase complementing protein wHa_10020 PF00271 Helicase conserved C-terminal domain wHa_10020 PF00270 DEAD/DEAH box helicase wHa_10020 PF17764 3′ DNA-binding domain (3′BD) wHa_10020 PF18074 Primosomal protein N C-terminal domain wHa_10020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain wHa_10030 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal wHa_10030 PF00355 Rieske [2Fe-2S] domain wHa_10040 PF03989 DNA gyrase C-terminal domain, beta-propeller wHa_10040 PF00521 DNA gyrase/topoisomerase IV, subunit A wHa_10070 PF02632 BioY family wHa_10080 PF00881 Nitroreductase family wHa_10090 PF01678 Diaminopimelate epimerase wHa_10100 PF02629 CoA binding domain wHa_10100 PF00549 CoA-ligase wHa_10110 PF08442 ATP-grasp domain wHa_10110 PF00549 CoA-ligase wHa_10130 PF04452 RNA methyltransferase wHa_10150 PF01218 Coproporphyrinogen III oxidase wHa_10160 PF00072 Response regulator receiver domain wHa_10160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wHa_10160 PF13188 PAS domain wHa_10160 PF00512 His Kinase A (phospho-acceptor) domain wHa_10160 PF08448 PAS fold wHa_10170 PF13614 AAA domain wHa_10180 PF02195 ParB-like nuclease domain wHa_10180 PF17762 HTH domain found in ParB protein wHa_10200 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit wHa_10210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit wHa_10230 PF01050 Mannose-6-phosphate isomerase wHa_10230 PF00483 Nucleotidyl transferase wHa_10240 PF02687 FtsX-like permease family wHa_10240 PF12704 MacB-like periplasmic core domain wHa_10270 PF00231 ATP synthase wHa_10280 PF01523 Putative modulator of DNA gyrase wHa_10290 PF00313 'Cold-shock' DNA-binding domain wHa_10300 PF00270 DEAD/DEAH box helicase wHa_10300 PF00271 Helicase conserved C-terminal domain wHa_10310 PF07724 AAA domain (Cdc48 subfamily) wHa_10310 PF17871 AAA lid domain wHa_10310 PF00004 ATPase family associated with various cellular activities (AAA) wHa_10310 PF10431 C-terminal, D2-small domain, of ClpB protein wHa_10310 PF02861 Clp amino terminal domain, pathogenicity island component wHa_10320 PF01791 DeoC/LacD family aldolase wHa_10330 PF01180 Dihydroorotate dehydrogenase wHa_10340 PF00035 Double-stranded RNA binding motif wHa_10340 PF14622 Ribonuclease-III-like wHa_10360 PF13091 PLD-like domain wHa_10400 PF00210 Ferritin-like domain wHa_10420 PF00999 Sodium/hydrogen exchanger family wHa_10420 PF02254 TrkA-N domain wHa_10440 PF02223 Thymidylate kinase wHa_10460 PF00004 ATPase family associated with various cellular activities (AAA) wHa_10460 PF01434 Peptidase family M41 wHa_10460 PF06480 FtsH Extracellular wHa_10460 PF17862 AAA+ lid domain wHa_10470 PF01171 PP-loop family wHa_10480 PF00691 OmpA family wHa_10530 PF00719 Inorganic pyrophosphatase wHa_10540 PF09312 SurA N-terminal domain wHa_10540 PF00639 PPIC-type PPIASE domain wHa_10550 PF07992 Pyridine nucleotide-disulphide oxidoreductase wHa_10600 PF00905 Penicillin binding protein transpeptidase domain wHa_10600 PF03717 Penicillin-binding Protein dimerisation domain wHa_10610 PF02401 LytB protein wHa_10620 PF00183 Hsp90 protein wHa_10640 PF00155 Aminotransferase class I and II wHa_10660 PF09285 Elongation factor P, C-terminal wHa_10660 PF08207 Elongation factor P (EF-P) KOW-like domain wHa_10660 PF01132 Elongation factor P (EF-P) OB domain wHa_10670 PF05239 PRC-barrel domain wHa_10670 PF01782 RimM N-terminal domain wHa_10680 PF00202 Aminotransferase class-III wHa_10690 PF00989 PAS fold wHa_10690 PF00512 His Kinase A (phospho-acceptor) domain wHa_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wHa_10700 PF00578 AhpC/TSA family wHa_10710 PF02463 RecF/RecN/SMC N terminal domain wHa_10750 PF03631 Virulence factor BrkB wHa_10770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain wHa_10770 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain wHa_10770 PF02142 MGS-like domain wHa_10800 PF00140 Sigma-70 factor, region 1.2 wHa_10800 PF04546 Sigma-70, non-essential region wHa_10800 PF03979 Sigma-70 factor, region 1.1 wHa_10800 PF04545 Sigma-70, region 4 wHa_10800 PF04539 Sigma-70 region 3 wHa_10800 PF04542 Sigma-70 region 2 wHa_10810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L wHa_10830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wHa_10830 PF00361 Proton-conducting membrane transporter wHa_10830 PF13244 Domain of unknown function (DUF4040) wHa_10840 PF03334 Na+/H+ antiporter subunit wHa_10860 PF01192 RNA polymerase Rpb6 wHa_10880 PF00731 AIR carboxylase wHa_10890 PF08676 MutL C terminal dimerisation domain wHa_10890 PF01119 DNA mismatch repair protein, C-terminal domain wHa_10900 PF00676 Dehydrogenase E1 component wHa_10900 PF16078 2-oxoglutarate dehydrogenase N-terminus wHa_10900 PF02779 Transketolase, pyrimidine binding domain wHa_10900 PF16870 2-oxoglutarate dehydrogenase C-terminal wHa_10950 PF02661 Fic/DOC family wHa_10950 PF13784 Fic/DOC family N-terminal wHa_10960 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase wHa_10970 PF01040 UbiA prenyltransferase family wHa_10980 PF02033 Ribosome-binding factor A wHa_10990 PF00009 Elongation factor Tu GTP binding domain wHa_10990 PF11987 Translation-initiation factor 2 wHa_10990 PF04760 Translation initiation factor IF-2, N-terminal region wHa_11000 PF00575 S1 RNA binding domain wHa_11000 PF08529 NusA N-terminal domain wHa_11000 PF13184 NusA-like KH domain wHa_11010 PF00873 AcrB/AcrD/AcrF family wHa_11030 PF00120 Glutamine synthetase, catalytic domain