locus-tag class description WwMa_00010 PF00308 Bacterial dnaA protein WwMa_00010 PF08299 Bacterial dnaA protein helix-turn-helix WwMa_00010 PF11638 DnaA N-terminal domain WwMa_00020 PF07549 SecD/SecF GG Motif WwMa_00020 PF02355 Protein export membrane protein WwMa_00040 PF02096 60Kd inner membrane protein WwMa_00040 PF14849 YidC periplasmic domain WwMa_00050 PF00885 6,7-dimethyl-8-ribityllumazine synthase WwMa_00060 PF01029 NusB family WwMa_00080 PF00692 dUTPase WwMa_00140 PF01648 4'-phosphopantetheinyl transferase superfamily WwMa_00150 PF03129 Anticodon binding domain WwMa_00150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WwMa_00180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WwMa_00180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WwMa_00180 PF13288 DXP reductoisomerase C-terminal domain WwMa_00200 PF00005 ABC transporter WwMa_00210 PF01113 Dihydrodipicolinate reductase, N-terminus WwMa_00210 PF05173 Dihydrodipicolinate reductase, C-terminus WwMa_00250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WwMa_00280 PF08264 Anticodon-binding domain of tRNA WwMa_00280 PF00133 tRNA synthetases class I (I, L, M and V) WwMa_00300 PF00115 Cytochrome C and Quinol oxidase polypeptide I WwMa_00330 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_00330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WwMa_00340 PF02899 Phage integrase, N-terminal SAM-like domain WwMa_00340 PF00589 Phage integrase family WwMa_00350 PF02934 GatB/GatE catalytic domain WwMa_00350 PF02637 GatB domain WwMa_00360 PF00676 Dehydrogenase E1 component WwMa_00370 PF03653 Uncharacterised protein family (UPF0093) WwMa_00380 PF00529 HlyD membrane-fusion protein of T1SS WwMa_00380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WwMa_00390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WwMa_00390 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WwMa_00400 PF00115 Cytochrome C and Quinol oxidase polypeptide I WwMa_00410 PF01040 UbiA prenyltransferase family WwMa_00420 PF00075 RNase H WwMa_00450 PF09190 DALR domain WwMa_00450 PF01406 tRNA synthetases class I (C) catalytic domain WwMa_00460 PF06055 Exopolysaccharide synthesis, ExoD WwMa_00470 PF01348 Type II intron maturase WwMa_00470 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_00490 PF02416 mttA/Hcf106 family WwMa_00500 PF00005 ABC transporter WwMa_00520 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WwMa_00540 PF01926 50S ribosome-binding GTPase WwMa_00540 PF06071 Protein of unknown function (DUF933) WwMa_00610 PF09297 NADH pyrophosphatase zinc ribbon domain WwMa_00610 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain WwMa_00610 PF00293 NUDIX domain WwMa_00630 PF03330 Lytic transglycolase WwMa_00640 PF01225 Mur ligase family, catalytic domain WwMa_00640 PF02875 Mur ligase family, glutamate ligase domain WwMa_00640 PF08245 Mur ligase middle domain WwMa_00650 PF07690 Major Facilitator Superfamily WwMa_00660 PF01494 FAD binding domain WwMa_00690 PF00709 Adenylosuccinate synthetase WwMa_00710 PF02371 Transposase IS116/IS110/IS902 family WwMa_00710 PF01548 Transposase WwMa_00810 PF01467 Cytidylyltransferase-like WwMa_00840 PF01255 Putative undecaprenyl diphosphate synthase WwMa_00860 PF02817 e3 binding domain WwMa_00860 PF00364 Biotin-requiring enzyme WwMa_00860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WwMa_00900 PF02861 Clp amino terminal domain, pathogenicity island component WwMa_00900 PF10431 C-terminal, D2-small domain, of ClpB protein WwMa_00900 PF07724 AAA domain (Cdc48 subfamily) WwMa_00900 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_00900 PF17871 AAA lid domain WwMa_00910 PF05088 Bacterial NAD-glutamate dehydrogenase WwMa_00930 PF00990 Diguanylate cyclase, GGDEF domain WwMa_00930 PF00072 Response regulator receiver domain WwMa_00940 PF11967 Recombination protein O N terminal WwMa_00940 PF02565 Recombination protein O C terminal WwMa_00970 PF00268 Ribonucleotide reductase, small chain WwMa_01010 PF01571 Aminomethyltransferase folate-binding domain WwMa_01020 PF00166 Chaperonin 10 Kd subunit WwMa_01030 PF00118 TCP-1/cpn60 chaperonin family WwMa_01050 PF01235 Sodium:alanine symporter family WwMa_01070 PF02545 Maf-like protein WwMa_01080 PF01176 Translation initiation factor 1A / IF-1 WwMa_01100 PF01548 Transposase WwMa_01100 PF02371 Transposase IS116/IS110/IS902 family WwMa_01180 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_01190 PF00578 AhpC/TSA family WwMa_01190 PF10417 C-terminal domain of 1-Cys peroxiredoxin WwMa_01220 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WwMa_01220 PF01578 Cytochrome C assembly protein WwMa_01240 PF04002 RadC-like JAB domain WwMa_01250 PF00768 D-alanyl-D-alanine carboxypeptidase WwMa_01250 PF07943 Penicillin-binding protein 5, C-terminal domain WwMa_01260 PF02646 RmuC family WwMa_01300 PF07517 SecA DEAD-like domain WwMa_01300 PF01043 SecA preprotein cross-linking domain WwMa_01300 PF07516 SecA Wing and Scaffold domain WwMa_01300 PF02810 SEC-C motif WwMa_01330 PF02481 DNA recombination-mediator protein A WwMa_01330 PF17782 DprA winged helix domain WwMa_01340 PF00037 4Fe-4S binding domain WwMa_01340 PF11953 Domain of unknown function (DUF3470) WwMa_01370 PF07478 D-ala D-ala ligase C-terminus WwMa_01370 PF01820 D-ala D-ala ligase N-terminus WwMa_01420 PF01653 NAD-dependent DNA ligase adenylation domain WwMa_01420 PF03120 NAD-dependent DNA ligase OB-fold domain WwMa_01420 PF12826 Helix-hairpin-helix motif WwMa_01420 PF00533 BRCA1 C Terminus (BRCT) domain WwMa_01440 PF04002 RadC-like JAB domain WwMa_01480 PF18413 Neuraminidase-like domain WwMa_01480 PF18413 Neuraminidase-like domain WwMa_01480 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain WwMa_01480 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain WwMa_01510 PF01734 Patatin-like phospholipase WwMa_01600 PF17482 Phage tail sheath C-terminal domain WwMa_01600 PF04984 Phage tail sheath protein subtilisin-like domain WwMa_01720 PF01548 Transposase WwMa_01720 PF02371 Transposase IS116/IS110/IS902 family WwMa_01750 PF00571 CBS domain WwMa_01750 PF03448 MgtE intracellular N domain WwMa_01750 PF01769 Divalent cation transporter WwMa_01760 PF03462 PCRF domain WwMa_01760 PF00472 RF-1 domain WwMa_01790 PF00849 RNA pseudouridylate synthase WwMa_01790 PF01479 S4 domain WwMa_01800 PF08946 Osmosensory transporter coiled coil WwMa_01800 PF00083 Sugar (and other) transporter WwMa_01810 PF02938 GAD domain WwMa_01810 PF00152 tRNA synthetases class II (D, K and N) WwMa_01810 PF01336 OB-fold nucleic acid binding domain WwMa_01830 PF05188 MutS domain II WwMa_01830 PF01624 MutS domain I WwMa_01830 PF05192 MutS domain III WwMa_01830 PF00488 MutS domain V WwMa_01830 PF05190 MutS family domain IV WwMa_01860 PF00902 Sec-independent protein translocase protein (TatC) WwMa_01870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WwMa_01870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WwMa_01920 PF01743 Poly A polymerase head domain WwMa_01920 PF12627 Probable RNA and SrmB- binding site of polymerase A WwMa_01920 PF13735 tRNA nucleotidyltransferase domain 2 putative WwMa_01930 PF00679 Elongation factor G C-terminus WwMa_01930 PF00009 Elongation factor Tu GTP binding domain WwMa_01930 PF03144 Elongation factor Tu domain 2 WwMa_01940 PF00749 tRNA synthetases class I (E and Q), catalytic domain WwMa_01970 PF00950 ABC 3 transport family WwMa_01990 PF08544 GHMP kinases C terminal WwMa_01990 PF00288 GHMP kinases N terminal domain WwMa_02000 PF12705 PD-(D/E)XK nuclease superfamily WwMa_02000 PF00580 UvrD/REP helicase N-terminal domain WwMa_02000 PF13361 UvrD-like helicase C-terminal domain WwMa_02010 PF03918 Cytochrome C biogenesis protein WwMa_02030 PF00111 2Fe-2S iron-sulfur cluster binding domain WwMa_02040 PF01556 DnaJ C terminal domain WwMa_02040 PF00226 DnaJ domain WwMa_02040 PF00684 DnaJ central domain WwMa_02060 PF08275 DNA primase catalytic core, N-terminal domain WwMa_02060 PF01807 CHC2 zinc finger WwMa_02060 PF08278 DNA primase DnaG DnaB-binding WwMa_02060 PF13662 Toprim domain WwMa_02060 PF10410 DnaB-helicase binding domain of primase WwMa_02070 PF08241 Methyltransferase domain WwMa_02090 PF00814 Glycoprotease family WwMa_02110 PF00596 Class II Aldolase and Adducin N-terminal domain WwMa_02130 PF01258 Prokaryotic dksA/traR C4-type zinc finger WwMa_02140 PF01548 Transposase WwMa_02140 PF02371 Transposase IS116/IS110/IS902 family WwMa_02160 PF00684 DnaJ central domain WwMa_02160 PF01556 DnaJ C terminal domain WwMa_02160 PF00226 DnaJ domain WwMa_02170 PF04551 GcpE protein WwMa_02200 PF01580 FtsK/SpoIIIE family WwMa_02200 PF09397 Ftsk gamma domain WwMa_02200 PF17854 FtsK alpha domain WwMa_02200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WwMa_02210 PF02325 YGGT family WwMa_02240 PF01926 50S ribosome-binding GTPase WwMa_02240 PF01018 GTP1/OBG WwMa_02250 PF00113 Enolase, C-terminal TIM barrel domain WwMa_02250 PF03952 Enolase, N-terminal domain WwMa_02270 PF08245 Mur ligase middle domain WwMa_02270 PF02875 Mur ligase family, glutamate ligase domain WwMa_02270 PF01225 Mur ligase family, catalytic domain WwMa_02280 PF02104 SURF1 family WwMa_02290 PF00210 Ferritin-like domain WwMa_02350 PF00206 Lyase WwMa_02350 PF10415 Fumarase C C-terminus WwMa_02380 PF00586 AIR synthase related protein, N-terminal domain WwMa_02380 PF02769 AIR synthase related protein, C-terminal domain WwMa_02380 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WwMa_02400 PF00684 DnaJ central domain WwMa_02400 PF00226 DnaJ domain WwMa_02400 PF01556 DnaJ C terminal domain WwMa_02410 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WwMa_02410 PF12706 Beta-lactamase superfamily domain WwMa_02410 PF17770 Ribonuclease J C-terminal domain WwMa_02430 PF07676 WD40-like Beta Propeller Repeat WwMa_02440 PF02686 Glu-tRNAGln amidotransferase C subunit WwMa_02450 PF14572 Phosphoribosyl synthetase-associated domain WwMa_02450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WwMa_02460 PF02779 Transketolase, pyrimidine binding domain WwMa_02460 PF02780 Transketolase, C-terminal domain WwMa_02460 PF00456 Transketolase, thiamine diphosphate binding domain WwMa_02470 PF00163 Ribosomal protein S4/S9 N-terminal domain WwMa_02470 PF01479 S4 domain WwMa_02480 PF04384 Iron-sulphur cluster assembly WwMa_02500 PF00830 Ribosomal L28 family WwMa_02510 PF04055 Radical SAM superfamily WwMa_02510 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WwMa_02530 PF00929 Exonuclease WwMa_02600 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_02600 PF01434 Peptidase family M41 WwMa_02600 PF17862 AAA+ lid domain WwMa_02630 PF17760 UvrA interaction domain WwMa_02630 PF17755 UvrA DNA-binding domain WwMa_02650 PF02779 Transketolase, pyrimidine binding domain WwMa_02650 PF02780 Transketolase, C-terminal domain WwMa_02650 PF00364 Biotin-requiring enzyme WwMa_02670 PF10502 Signal peptidase, peptidase S26 WwMa_02680 PF00012 Hsp70 protein WwMa_02690 PF00226 DnaJ domain WwMa_02690 PF07743 HSCB C-terminal oligomerisation domain WwMa_02700 PF01521 Iron-sulphur cluster biosynthesis WwMa_02710 PF01592 NifU-like N terminal domain WwMa_02720 PF00448 SRP54-type protein, GTPase domain WwMa_02720 PF02881 SRP54-type protein, helical bundle domain WwMa_02730 PF18073 Rubredoxin metal binding domain WwMa_02740 PF07690 Major Facilitator Superfamily WwMa_02740 PF00083 Sugar (and other) transporter WwMa_02750 PF01751 Toprim domain WwMa_02750 PF01396 Topoisomerase DNA binding C4 zinc finger WwMa_02750 PF13368 Topoisomerase C-terminal repeat WwMa_02750 PF01131 DNA topoisomerase WwMa_02770 PF02534 Type IV secretory system Conjugative DNA transfer WwMa_02780 PF00437 Type II/IV secretion system protein WwMa_02810 PF04335 VirB8 protein WwMa_02820 PF00925 GTP cyclohydrolase II WwMa_02850 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_02890 PF02899 Phage integrase, N-terminal SAM-like domain WwMa_02890 PF00589 Phage integrase family WwMa_02910 PF01649 Ribosomal protein S20 WwMa_02920 PF00285 Citrate synthase, C-terminal domain WwMa_02950 PF01541 GIY-YIG catalytic domain WwMa_02960 PF02371 Transposase IS116/IS110/IS902 family WwMa_02960 PF01548 Transposase WwMa_02980 PF05491 RuvB C-terminal winged helix domain WwMa_02980 PF17864 RuvB AAA lid domain WwMa_02980 PF05496 Holliday junction DNA helicase RuvB P-loop domain WwMa_02990 PF07499 RuvA, C-terminal domain WwMa_02990 PF01330 RuvA N terminal domain WwMa_03000 PF00034 Cytochrome c WwMa_03020 PF00580 UvrD/REP helicase N-terminal domain WwMa_03020 PF13361 UvrD-like helicase C-terminal domain WwMa_03040 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WwMa_03050 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WwMa_03060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WwMa_03060 PF00361 Proton-conducting membrane transporter WwMa_03070 PF00361 Proton-conducting membrane transporter WwMa_03080 PF00361 Proton-conducting membrane transporter WwMa_03090 PF08279 HTH domain WwMa_03090 PF03099 Biotin/lipoate A/B protein ligase family WwMa_03090 PF02237 Biotin protein ligase C terminal domain WwMa_03110 PF03100 CcmE WwMa_03140 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WwMa_03140 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WwMa_03140 PF10531 SLBB domain WwMa_03150 PF05198 Translation initiation factor IF-3, N-terminal domain WwMa_03150 PF00707 Translation initiation factor IF-3, C-terminal domain WwMa_03160 PF03129 Anticodon binding domain WwMa_03160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WwMa_03160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WwMa_03170 PF12838 4Fe-4S dicluster domain WwMa_03180 PF12631 MnmE helical domain WwMa_03180 PF10396 GTP-binding protein TrmE N-terminus WwMa_03180 PF01926 50S ribosome-binding GTPase WwMa_03190 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_03330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_03360 PF10609 NUBPL iron-transfer P-loop NTPase WwMa_03370 PF02371 Transposase IS116/IS110/IS902 family WwMa_03370 PF01548 Transposase WwMa_03400 PF00579 tRNA synthetases class I (W and Y) WwMa_03460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_03490 PF00692 dUTPase WwMa_03500 PF02386 Cation transport protein WwMa_03530 PF01765 Ribosome recycling factor WwMa_03540 PF00696 Amino acid kinase family WwMa_03550 PF00889 Elongation factor TS WwMa_03560 PF00318 Ribosomal protein S2 WwMa_03570 PF02699 Preprotein translocase subunit WwMa_03580 PF01380 SIS domain WwMa_03610 PF00101 Ribulose bisphosphate carboxylase, small chain WwMa_03610 PF00132 Bacterial transferase hexapeptide (six repeats) WwMa_03630 PF00117 Glutamine amidotransferase class-I WwMa_03630 PF06418 CTP synthase N-terminus WwMa_03650 PF14437 MafB19-like deaminase WwMa_03680 PF00005 ABC transporter WwMa_03690 PF03485 Arginyl tRNA synthetase N terminal domain WwMa_03690 PF00750 tRNA synthetases class I (R) WwMa_03690 PF05746 DALR anticodon binding domain WwMa_03720 PF00664 ABC transporter transmembrane region WwMa_03720 PF00005 ABC transporter WwMa_03730 PF01209 ubiE/COQ5 methyltransferase family WwMa_03740 PF07690 Major Facilitator Superfamily WwMa_03800 PF08525 Opacity-associated protein A N-terminal motif WwMa_03800 PF01476 LysM domain WwMa_03800 PF01551 Peptidase family M23 WwMa_03810 PF01709 Transcriptional regulator WwMa_03840 PF01066 CDP-alcohol phosphatidyltransferase WwMa_03850 PF00390 Malic enzyme, N-terminal domain WwMa_03850 PF01515 Phosphate acetyl/butaryl transferase WwMa_03850 PF03949 Malic enzyme, NAD binding domain WwMa_03870 PF00462 Glutaredoxin WwMa_03880 PF00529 HlyD membrane-fusion protein of T1SS WwMa_03880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WwMa_03900 PF00391 PEP-utilising enzyme, mobile domain WwMa_03900 PF02896 PEP-utilising enzyme, TIM barrel domain WwMa_03900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WwMa_03970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WwMa_03970 PF00925 GTP cyclohydrolase II WwMa_03980 PF01272 Transcription elongation factor, GreA/GreB, C-term WwMa_03980 PF03449 Transcription elongation factor, N-terminal WwMa_03990 PF02874 ATP synthase alpha/beta family, beta-barrel domain WwMa_03990 PF00306 ATP synthase alpha/beta chain, C terminal domain WwMa_03990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WwMa_04000 PF00213 ATP synthase delta (OSCP) subunit WwMa_04010 PF02021 Uncharacterised protein family UPF0102 WwMa_04020 PF01196 Ribosomal protein L17 WwMa_04030 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WwMa_04030 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WwMa_04030 PF01000 RNA polymerase Rpb3/RpoA insert domain WwMa_04040 PF00411 Ribosomal protein S11 WwMa_04050 PF00416 Ribosomal protein S13/S18 WwMa_04070 PF00344 SecY translocase WwMa_04080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WwMa_04090 PF03719 Ribosomal protein S5, C-terminal domain WwMa_04090 PF00333 Ribosomal protein S5, N-terminal domain WwMa_04100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WwMa_04110 PF00347 Ribosomal protein L6 WwMa_04120 PF00410 Ribosomal protein S8 WwMa_04130 PF00253 Ribosomal protein S14p/S29e WwMa_04140 PF00673 ribosomal L5P family C-terminus WwMa_04140 PF00281 Ribosomal protein L5 WwMa_04150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WwMa_04160 PF00238 Ribosomal protein L14p/L23e WwMa_04170 PF00366 Ribosomal protein S17 WwMa_04180 PF00831 Ribosomal L29 protein WwMa_04190 PF00252 Ribosomal protein L16p/L10e WwMa_04200 PF07650 KH domain WwMa_04200 PF00189 Ribosomal protein S3, C-terminal domain WwMa_04210 PF00237 Ribosomal protein L22p/L17e WwMa_04220 PF00203 Ribosomal protein S19 WwMa_04230 PF03947 Ribosomal Proteins L2, C-terminal domain WwMa_04230 PF00181 Ribosomal Proteins L2, RNA binding domain WwMa_04240 PF00276 Ribosomal protein L23 WwMa_04250 PF00573 Ribosomal protein L4/L1 family WwMa_04260 PF00297 Ribosomal protein L3 WwMa_04270 PF00338 Ribosomal protein S10p/S20e WwMa_04280 PF03144 Elongation factor Tu domain 2 WwMa_04280 PF03143 Elongation factor Tu C-terminal domain WwMa_04280 PF00009 Elongation factor Tu GTP binding domain WwMa_04290 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WwMa_04290 PF00117 Glutamine amidotransferase class-I WwMa_04310 PF00923 Transaldolase/Fructose-6-phosphate aldolase WwMa_04330 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WwMa_04340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WwMa_04340 PF02874 ATP synthase alpha/beta family, beta-barrel domain WwMa_04350 PF00528 Binding-protein-dependent transport system inner membrane component WwMa_04355 PF00468 Ribosomal protein L34 WwMa_04400 PF03477 ATP cone domain WwMa_04400 PF02867 Ribonucleotide reductase, barrel domain WwMa_04400 PF00317 Ribonucleotide reductase, all-alpha domain WwMa_04410 PF03652 Holliday junction resolvase WwMa_04420 PF02075 Crossover junction endodeoxyribonuclease RuvC WwMa_04430 PF00510 Cytochrome c oxidase subunit III WwMa_04450 PF03070 TENA/THI-4/PQQC family WwMa_04460 PF02773 S-adenosylmethionine synthetase, C-terminal domain WwMa_04460 PF02772 S-adenosylmethionine synthetase, central domain WwMa_04460 PF00438 S-adenosylmethionine synthetase, N-terminal domain WwMa_04470 PF01016 Ribosomal L27 protein WwMa_04480 PF00829 Ribosomal prokaryotic L21 protein WwMa_04510 PF00132 Bacterial transferase hexapeptide (six repeats) WwMa_04510 PF14602 Hexapeptide repeat of succinyl-transferase WwMa_04510 PF12804 MobA-like NTP transferase domain WwMa_04520 PF01409 tRNA synthetases class II core domain (F) WwMa_04520 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WwMa_04540 PF00677 Lumazine binding domain WwMa_04560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WwMa_04560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WwMa_04560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WwMa_04560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WwMa_04620 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WwMa_04620 PF00476 DNA polymerase family A WwMa_04620 PF01367 5'-3' exonuclease, C-terminal SAM fold WwMa_04630 PF01425 Amidase WwMa_04640 PF00986 DNA gyrase B subunit, carboxyl terminus WwMa_04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WwMa_04640 PF01751 Toprim domain WwMa_04640 PF00204 DNA gyrase B WwMa_04670 PF02666 Phosphatidylserine decarboxylase WwMa_04680 PF01066 CDP-alcohol phosphatidyltransferase WwMa_04690 PF01235 Sodium:alanine symporter family WwMa_04700 PF01235 Sodium:alanine symporter family WwMa_04710 PF02660 Glycerol-3-phosphate acyltransferase WwMa_04730 PF01545 Cation efflux family WwMa_04740 PF01556 DnaJ C terminal domain WwMa_04740 PF00684 DnaJ central domain WwMa_04740 PF00226 DnaJ domain WwMa_04760 PF02371 Transposase IS116/IS110/IS902 family WwMa_04760 PF01548 Transposase WwMa_04780 PF01548 Transposase WwMa_04780 PF02371 Transposase IS116/IS110/IS902 family WwMa_04810 PF08032 RNA 2'-O ribose methyltransferase substrate binding WwMa_04810 PF00588 SpoU rRNA Methylase family WwMa_04830 PF01541 GIY-YIG catalytic domain WwMa_04830 PF02151 UvrB/uvrC motif WwMa_04830 PF08459 UvrC Helix-hairpin-helix N-terminal WwMa_04840 PF02092 Glycyl-tRNA synthetase beta subunit WwMa_04840 PF05746 DALR anticodon binding domain WwMa_04850 PF02091 Glycyl-tRNA synthetase alpha subunit WwMa_04870 PF00490 Delta-aminolevulinic acid dehydratase WwMa_04880 PF00146 NADH dehydrogenase WwMa_04890 PF00384 Molybdopterin oxidoreductase WwMa_04890 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WwMa_04890 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WwMa_04910 PF02789 Cytosol aminopeptidase family, N-terminal domain WwMa_04910 PF00883 Cytosol aminopeptidase family, catalytic domain WwMa_04930 PF01619 Proline dehydrogenase WwMa_04930 PF14850 DNA-binding domain of Proline dehydrogenase WwMa_04930 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WwMa_04930 PF00171 Aldehyde dehydrogenase family WwMa_04940 PF00694 Aconitase C-terminal domain WwMa_04940 PF00330 Aconitase family (aconitate hydratase) WwMa_04950 PF02556 Preprotein translocase subunit SecB WwMa_04970 PF00929 Exonuclease WwMa_04980 PF02630 SCO1/SenC WwMa_04990 PF14622 Ribonuclease-III-like WwMa_04990 PF00035 Double-stranded RNA binding motif WwMa_05000 PF01180 Dihydroorotate dehydrogenase WwMa_05020 PF01791 DeoC/LacD family aldolase WwMa_05040 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_05040 PF07724 AAA domain (Cdc48 subfamily) WwMa_05040 PF17871 AAA lid domain WwMa_05040 PF02861 Clp amino terminal domain, pathogenicity island component WwMa_05040 PF10431 C-terminal, D2-small domain, of ClpB protein WwMa_05050 PF00271 Helicase conserved C-terminal domain WwMa_05050 PF00270 DEAD/DEAH box helicase WwMa_05060 PF00313 'Cold-shock' DNA-binding domain WwMa_05070 PF01523 Putative modulator of DNA gyrase WwMa_05080 PF00231 ATP synthase WwMa_05110 PF02687 FtsX-like permease family WwMa_05110 PF12704 MacB-like periplasmic core domain WwMa_05120 PF01050 Mannose-6-phosphate isomerase WwMa_05120 PF00483 Nucleotidyl transferase WwMa_05140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WwMa_05150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WwMa_05180 PF00140 Sigma-70 factor, region 1.2 WwMa_05180 PF04542 Sigma-70 region 2 WwMa_05180 PF04539 Sigma-70 region 3 WwMa_05180 PF04545 Sigma-70, region 4 WwMa_05180 PF03979 Sigma-70 factor, region 1.1 WwMa_05180 PF04546 Sigma-70, non-essential region WwMa_05190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WwMa_05210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WwMa_05210 PF00361 Proton-conducting membrane transporter WwMa_05210 PF13244 Domain of unknown function (DUF4040) WwMa_05220 PF03334 Na+/H+ antiporter subunit WwMa_05240 PF01192 RNA polymerase Rpb6 WwMa_05260 PF00731 AIR carboxylase WwMa_05270 PF08676 MutL C terminal dimerisation domain WwMa_05270 PF01119 DNA mismatch repair protein, C-terminal domain WwMa_05280 PF01145 SPFH domain / Band 7 family WwMa_05290 PF01145 SPFH domain / Band 7 family WwMa_05300 PF13180 PDZ domain WwMa_05320 PF02371 Transposase IS116/IS110/IS902 family WwMa_05320 PF01548 Transposase WwMa_05340 PF00293 NUDIX domain WwMa_05350 PF01026 TatD related DNase WwMa_05360 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WwMa_05360 PF00056 lactate/malate dehydrogenase, NAD binding domain WwMa_05370 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WwMa_05380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WwMa_05390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WwMa_05400 PF01230 HIT domain WwMa_05430 PF08245 Mur ligase middle domain WwMa_05430 PF02875 Mur ligase family, glutamate ligase domain WwMa_05430 PF01225 Mur ligase family, catalytic domain WwMa_05440 PF01370 NAD dependent epimerase/dehydratase family WwMa_05440 PF08338 Domain of unknown function (DUF1731) WwMa_05450 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WwMa_05450 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WwMa_05460 PF02504 Fatty acid synthesis protein WwMa_05470 PF01783 Ribosomal L32p protein family WwMa_05480 PF02405 Permease MlaE WwMa_05490 PF00005 ABC transporter WwMa_05490 PF08402 TOBE domain WwMa_05500 PF00448 SRP54-type protein, GTPase domain WwMa_05500 PF02881 SRP54-type protein, helical bundle domain WwMa_05500 PF02978 Signal peptide binding domain WwMa_05520 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_05530 PF07977 FabA-like domain WwMa_05550 PF01103 Surface antigen WwMa_05550 PF07244 Surface antigen variable number repeat WwMa_05560 PF17820 PDZ domain WwMa_05560 PF02163 Peptidase family M50 WwMa_05590 PF00216 Bacterial DNA-binding protein WwMa_05600 PF00575 S1 RNA binding domain WwMa_05610 PF02390 Putative methyltransferase WwMa_05650 PF01548 Transposase WwMa_05650 PF02371 Transposase IS116/IS110/IS902 family WwMa_05660 PF02245 Methylpurine-DNA glycosylase (MPG) WwMa_05680 PF00953 Glycosyl transferase family 4 WwMa_05690 PF01351 Ribonuclease HII WwMa_05730 PF00586 AIR synthase related protein, N-terminal domain WwMa_05730 PF02769 AIR synthase related protein, C-terminal domain WwMa_05740 PF01259 SAICAR synthetase WwMa_05750 PF01746 tRNA (Guanine-1)-methyltransferase WwMa_05760 PF01245 Ribosomal protein L19 WwMa_05770 PF00528 Binding-protein-dependent transport system inner membrane component WwMa_05800 PF01243 Pyridoxamine 5'-phosphate oxidase WwMa_05800 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WwMa_05810 PF06827 Zinc finger found in FPG and IleRS WwMa_05810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WwMa_05810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WwMa_05830 PF01039 Carboxyl transferase domain WwMa_05850 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WwMa_05850 PF01926 50S ribosome-binding GTPase WwMa_05880 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_05880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WwMa_05900 PF04101 Glycosyltransferase family 28 C-terminal domain WwMa_05900 PF03033 Glycosyltransferase family 28 N-terminal domain WwMa_05910 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WwMa_05910 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WwMa_05920 PF00578 AhpC/TSA family WwMa_05930 PF02463 RecF/RecN/SMC N terminal domain WwMa_05940 PF00696 Amino acid kinase family WwMa_05940 PF01842 ACT domain WwMa_05940 PF13840 ACT domain WwMa_05950 PF00999 Sodium/hydrogen exchanger family WwMa_05950 PF02254 TrkA-N domain WwMa_05970 PF02223 Thymidylate kinase WwMa_05980 PF03772 Competence protein WwMa_05980 PF00753 Metallo-beta-lactamase superfamily WwMa_06020 PF01219 Prokaryotic diacylglycerol kinase WwMa_06030 PF02142 MGS-like domain WwMa_06030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WwMa_06030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WwMa_06050 PF03631 Virulence factor BrkB WwMa_06070 PF13537 Glutamine amidotransferase domain WwMa_06070 PF00156 Phosphoribosyl transferase domain WwMa_06090 PF01548 Transposase WwMa_06090 PF02371 Transposase IS116/IS110/IS902 family WwMa_06150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_06180 PF00155 Aminotransferase class I and II WwMa_06200 PF01132 Elongation factor P (EF-P) OB domain WwMa_06200 PF08207 Elongation factor P (EF-P) KOW-like domain WwMa_06200 PF09285 Elongation factor P, C-terminal WwMa_06210 PF05239 PRC-barrel domain WwMa_06210 PF01782 RimM N-terminal domain WwMa_06230 PF00202 Aminotransferase class-III WwMa_06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WwMa_06240 PF00512 His Kinase A (phospho-acceptor) domain WwMa_06240 PF00989 PAS fold WwMa_06240 PF13188 PAS domain WwMa_06240 PF13426 PAS domain WwMa_06260 PF00814 Glycoprotease family WwMa_06280 PF00664 ABC transporter transmembrane region WwMa_06280 PF00005 ABC transporter WwMa_06300 PF02817 e3 binding domain WwMa_06300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WwMa_06300 PF00364 Biotin-requiring enzyme WwMa_06330 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_06330 PF17862 AAA+ lid domain WwMa_06330 PF06480 FtsH Extracellular WwMa_06330 PF01434 Peptidase family M41 WwMa_06340 PF01171 PP-loop family WwMa_06350 PF00691 OmpA family WwMa_06400 PF00719 Inorganic pyrophosphatase WwMa_06410 PF09312 SurA N-terminal domain WwMa_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase WwMa_06470 PF02401 LytB protein WwMa_06510 PF00436 Single-strand binding protein family WwMa_06520 PF00701 Dihydrodipicolinate synthetase family WwMa_06530 PF08240 Alcohol dehydrogenase GroES-like domain WwMa_06530 PF00107 Zinc-binding dehydrogenase WwMa_06550 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WwMa_06560 PF01027 Inhibitor of apoptosis-promoting Bax1 WwMa_06570 PF00266 Aminotransferase class-V WwMa_06580 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WwMa_06600 PF00005 ABC transporter WwMa_06610 PF01521 Iron-sulphur cluster biosynthesis WwMa_06620 PF01966 HD domain WwMa_06620 PF13286 Phosphohydrolase-associated domain WwMa_06630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WwMa_06630 PF01872 RibD C-terminal domain WwMa_06650 PF16198 tRNA pseudouridylate synthase B C-terminal domain WwMa_06650 PF01509 TruB family pseudouridylate synthase (N terminal domain) WwMa_06660 PF00312 Ribosomal protein S15 WwMa_06670 PF00013 KH domain WwMa_06670 PF03725 3' exoribonuclease family, domain 2 WwMa_06670 PF00575 S1 RNA binding domain WwMa_06670 PF01138 3' exoribonuclease family, domain 1 WwMa_06670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WwMa_06680 PF00834 Ribulose-phosphate 3 epimerase family WwMa_06710 PF00162 Phosphoglycerate kinase WwMa_06720 PF00464 Serine hydroxymethyltransferase WwMa_06760 PF00893 Small Multidrug Resistance protein WwMa_06770 PF00155 Aminotransferase class I and II WwMa_06780 PF01208 Uroporphyrinogen decarboxylase (URO-D) WwMa_06790 PF03471 Transporter associated domain WwMa_06790 PF00571 CBS domain WwMa_06840 PF00361 Proton-conducting membrane transporter WwMa_06850 PF01098 Cell cycle protein WwMa_06860 PF00266 Aminotransferase class-V WwMa_06870 PF04002 RadC-like JAB domain WwMa_06940 PF02371 Transposase IS116/IS110/IS902 family WwMa_06940 PF01548 Transposase WwMa_06960 PF03232 Ubiquinone biosynthesis protein COQ7 WwMa_06970 PF03167 Uracil DNA glycosylase superfamily WwMa_06980 PF01327 Polypeptide deformylase WwMa_06990 PF02491 SHS2 domain inserted in FTSA WwMa_07000 PF00557 Metallopeptidase family M24 WwMa_07010 PF00083 Sugar (and other) transporter WwMa_07020 PF01795 MraW methylase family WwMa_07040 PF14693 Ribosomal protein TL5, C-terminal domain WwMa_07040 PF01386 Ribosomal L25p family WwMa_07050 PF01195 Peptidyl-tRNA hydrolase WwMa_07060 PF00154 recA bacterial DNA recombination protein WwMa_07070 PF01416 tRNA pseudouridine synthase WwMa_07080 PF02767 DNA polymerase III beta subunit, central domain WwMa_07080 PF02768 DNA polymerase III beta subunit, C-terminal domain WwMa_07080 PF00712 DNA polymerase III beta subunit, N-terminal domain WwMa_07100 PF00140 Sigma-70 factor, region 1.2 WwMa_07100 PF04542 Sigma-70 region 2 WwMa_07100 PF04545 Sigma-70, region 4 WwMa_07110 PF13505 Outer membrane protein beta-barrel domain WwMa_07120 PF02575 YbaB/EbfC DNA-binding family WwMa_07130 PF12169 DNA polymerase III subunits gamma and tau domain III WwMa_07180 PF13462 Thioredoxin WwMa_07190 PF03364 Polyketide cyclase / dehydrase and lipid transport WwMa_07210 PF08245 Mur ligase middle domain WwMa_07210 PF02875 Mur ligase family, glutamate ligase domain WwMa_07240 PF01523 Putative modulator of DNA gyrase WwMa_07260 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WwMa_07260 PF00355 Rieske [2Fe-2S] domain WwMa_07270 PF00521 DNA gyrase/topoisomerase IV, subunit A WwMa_07270 PF03989 DNA gyrase C-terminal domain, beta-propeller WwMa_07300 PF02632 BioY family WwMa_07310 PF00881 Nitroreductase family WwMa_07330 PF01678 Diaminopimelate epimerase WwMa_07340 PF02629 CoA binding domain WwMa_07340 PF00549 CoA-ligase WwMa_07350 PF08442 ATP-grasp domain WwMa_07350 PF00549 CoA-ligase WwMa_07370 PF04452 RNA methyltransferase WwMa_07390 PF01218 Coproporphyrinogen III oxidase WwMa_07400 PF00072 Response regulator receiver domain WwMa_07400 PF13188 PAS domain WwMa_07400 PF00512 His Kinase A (phospho-acceptor) domain WwMa_07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WwMa_07400 PF08448 PAS fold WwMa_07410 PF13614 AAA domain WwMa_07420 PF17762 HTH domain found in ParB protein WwMa_07420 PF02195 ParB-like nuclease domain WwMa_07430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WwMa_07430 PF02542 YgbB family WwMa_07450 PF01594 AI-2E family transporter WwMa_07480 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_07530 PF00183 Hsp90 protein WwMa_07560 PF13662 Toprim domain WwMa_07560 PF02132 RecR protein WwMa_07590 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WwMa_07590 PF18074 Primosomal protein N C-terminal domain WwMa_07590 PF17764 3′ DNA-binding domain (3′BD) WwMa_07590 PF00270 DEAD/DEAH box helicase WwMa_07630 PF02511 Thymidylate synthase complementing protein WwMa_07640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WwMa_07650 PF02801 Beta-ketoacyl synthase, C-terminal domain WwMa_07650 PF00109 Beta-ketoacyl synthase, N-terminal domain WwMa_07660 PF00550 Phosphopantetheine attachment site WwMa_07670 PF00348 Polyprenyl synthetase WwMa_07690 PF10431 C-terminal, D2-small domain, of ClpB protein WwMa_07690 PF07724 AAA domain (Cdc48 subfamily) WwMa_07690 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_07700 PF00227 Proteasome subunit WwMa_07730 PF00762 Ferrochelatase WwMa_07750 PF02371 Transposase IS116/IS110/IS902 family WwMa_07750 PF01548 Transposase WwMa_07760 PF00334 Nucleoside diphosphate kinase WwMa_07770 PF00202 Aminotransferase class-III WwMa_07780 PF01595 Cyclin M transmembrane N-terminal domain WwMa_07780 PF03471 Transporter associated domain WwMa_07780 PF00571 CBS domain WwMa_07790 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WwMa_07800 PF02441 Flavoprotein WwMa_07810 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WwMa_07810 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WwMa_07830 PF08264 Anticodon-binding domain of tRNA WwMa_07830 PF09334 tRNA synthetases class I (M) WwMa_07830 PF13603 Leucyl-tRNA synthetase, Domain 2 WwMa_07830 PF00133 tRNA synthetases class I (I, L, M and V) WwMa_07840 PF01551 Peptidase family M23 WwMa_07850 PF13411 MerR HTH family regulatory protein WwMa_07860 PF00216 Bacterial DNA-binding protein WwMa_07880 PF00271 Helicase conserved C-terminal domain WwMa_07880 PF17757 UvrB interaction domain WwMa_07880 PF12344 Ultra-violet resistance protein B WwMa_07880 PF04851 Type III restriction enzyme, res subunit WwMa_07880 PF02151 UvrB/uvrC motif WwMa_07890 PF00033 Cytochrome b/b6/petB WwMa_07890 PF02167 Cytochrome C1 family WwMa_07890 PF00032 Cytochrome b(C-terminal)/b6/petD WwMa_07900 PF00033 Cytochrome b/b6/petB WwMa_07900 PF00032 Cytochrome b(C-terminal)/b6/petD WwMa_07940 PF00684 DnaJ central domain WwMa_07940 PF01556 DnaJ C terminal domain WwMa_07940 PF00226 DnaJ domain WwMa_07960 PF13393 Histidyl-tRNA synthetase WwMa_07960 PF03129 Anticodon binding domain WwMa_07970 PF01975 Survival protein SurE WwMa_07990 PF13520 Amino acid permease WwMa_08020 PF01118 Semialdehyde dehydrogenase, NAD binding domain WwMa_08020 PF02774 Semialdehyde dehydrogenase, dimerisation domain WwMa_08030 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WwMa_08030 PF02222 ATP-grasp domain WwMa_08040 PF04379 ApaG domain WwMa_08050 PF00528 Binding-protein-dependent transport system inner membrane component WwMa_08150 PF07650 KH domain WwMa_08150 PF01926 50S ribosome-binding GTPase WwMa_08180 PF00085 Thioredoxin WwMa_08210 PF03070 TENA/THI-4/PQQC family WwMa_08220 PF02152 Dihydroneopterin aldolase WwMa_08230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WwMa_08230 PF00809 Pterin binding enzyme WwMa_08240 PF00186 Dihydrofolate reductase WwMa_08280 PF01546 Peptidase family M20/M25/M40 WwMa_08280 PF07687 Peptidase dimerisation domain WwMa_08290 PF13685 Iron-containing alcohol dehydrogenase WwMa_08300 PF10397 Adenylosuccinate lyase C-terminus WwMa_08300 PF00206 Lyase WwMa_08310 PF03948 Ribosomal protein L9, C-terminal domain WwMa_08310 PF01281 Ribosomal protein L9, N-terminal domain WwMa_08320 PF01084 Ribosomal protein S18 WwMa_08330 PF01250 Ribosomal protein S6 WwMa_08340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WwMa_08340 PF07733 Bacterial DNA polymerase III alpha NTPase domain WwMa_08340 PF02811 PHP domain WwMa_08340 PF14579 Helix-hairpin-helix motif WwMa_08360 PF17676 LD-carboxypeptidase C-terminal domain WwMa_08360 PF02016 LD-carboxypeptidase N-terminal domain WwMa_08370 PF03099 Biotin/lipoate A/B protein ligase family WwMa_08430 PF03023 Lipid II flippase MurJ WwMa_08450 PF13932 GidA associated domain WwMa_08450 PF01134 Glucose inhibited division protein A WwMa_08460 PF00557 Metallopeptidase family M24 WwMa_08460 PF01321 Creatinase/Prolidase N-terminal domain WwMa_08520 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WwMa_08550 PF03060 Nitronate monooxygenase WwMa_08570 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WwMa_08580 PF17768 RecJ OB domain WwMa_08580 PF01368 DHH family WwMa_08580 PF02272 DHHA1 domain WwMa_08590 PF04055 Radical SAM superfamily WwMa_08590 PF01938 TRAM domain WwMa_08590 PF00919 Uncharacterized protein family UPF0004 WwMa_08600 PF00133 tRNA synthetases class I (I, L, M and V) WwMa_08600 PF08264 Anticodon-binding domain of tRNA WwMa_08620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WwMa_08620 PF01588 Putative tRNA binding domain WwMa_08620 PF03147 Ferredoxin-fold anticodon binding domain WwMa_08620 PF03484 tRNA synthetase B5 domain WwMa_08620 PF03483 B3/4 domain WwMa_08640 PF00119 ATP synthase A chain WwMa_08650 PF00137 ATP synthase subunit C WwMa_08690 PF02628 Cytochrome oxidase assembly protein WwMa_08700 PF00364 Biotin-requiring enzyme WwMa_08700 PF00289 Biotin carboxylase, N-terminal domain WwMa_08700 PF02785 Biotin carboxylase C-terminal domain WwMa_08700 PF18140 Propionyl-coenzyme A carboxylase BT domain WwMa_08700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WwMa_08720 PF00749 tRNA synthetases class I (E and Q), catalytic domain WwMa_08740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WwMa_08760 PF00380 Ribosomal protein S9/S16 WwMa_08770 PF00572 Ribosomal protein L13 WwMa_08790 PF10691 Protein of unknown function (DUF2497) WwMa_08800 PF01728 FtsJ-like methyltransferase WwMa_08820 PF01921 tRNA synthetases class I (K) WwMa_08840 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WwMa_08850 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WwMa_08860 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WwMa_08870 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WwMa_08880 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WwMa_08910 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WwMa_08910 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WwMa_08920 PF05193 Peptidase M16 inactive domain WwMa_08920 PF00675 Insulinase (Peptidase family M16) WwMa_08940 PF01702 Queuine tRNA-ribosyltransferase WwMa_08970 PF00486 Transcriptional regulatory protein, C terminal WwMa_08970 PF00072 Response regulator receiver domain WwMa_08980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WwMa_08980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WwMa_08990 PF04608 Phosphatidylglycerophosphatase A WwMa_09020 PF13085 2Fe-2S iron-sulfur cluster binding domain WwMa_09030 PF02130 Uncharacterized protein family UPF0054 WwMa_09050 PF00091 Tubulin/FtsZ family, GTPase domain WwMa_09050 PF12327 FtsZ family, C-terminal domain WwMa_09070 PF01078 Magnesium chelatase, subunit ChlI WwMa_09070 PF13335 Magnesium chelatase, subunit ChlI C-terminal WwMa_09080 PF01522 Polysaccharide deacetylase WwMa_09090 PF03717 Penicillin-binding Protein dimerisation domain WwMa_09090 PF00905 Penicillin binding protein transpeptidase domain WwMa_09100 PF05362 Lon protease (S16) C-terminal proteolytic domain WwMa_09100 PF02190 ATP-dependent protease La (LON) substrate-binding domain WwMa_09100 PF00004 ATPase family associated with various cellular activities (AAA) WwMa_09110 PF07724 AAA domain (Cdc48 subfamily) WwMa_09110 PF10431 C-terminal, D2-small domain, of ClpB protein WwMa_09110 PF06689 ClpX C4-type zinc finger WwMa_09120 PF00574 Clp protease WwMa_09130 PF05698 Bacterial trigger factor protein (TF) C-terminus WwMa_09130 PF05697 Bacterial trigger factor protein (TF) WwMa_09130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WwMa_09140 PF04972 BON domain WwMa_09160 PF02390 Putative methyltransferase WwMa_09160 PF05175 Methyltransferase small domain WwMa_09160 PF17827 PrmC N-terminal domain WwMa_09170 PF00164 Ribosomal protein S12/S23 WwMa_09180 PF00177 Ribosomal protein S7p/S5e WwMa_09190 PF03144 Elongation factor Tu domain 2 WwMa_09190 PF00009 Elongation factor Tu GTP binding domain WwMa_09190 PF03764 Elongation factor G, domain IV WwMa_09190 PF14492 Elongation Factor G, domain II WwMa_09190 PF00679 Elongation factor G C-terminus WwMa_09200 PF03143 Elongation factor Tu C-terminal domain WwMa_09200 PF03144 Elongation factor Tu domain 2 WwMa_09200 PF00009 Elongation factor Tu GTP binding domain WwMa_09210 PF02357 Transcription termination factor nusG WwMa_09210 PF00467 KOW motif WwMa_09220 PF03946 Ribosomal protein L11, N-terminal domain WwMa_09220 PF00298 Ribosomal protein L11, RNA binding domain WwMa_09230 PF00687 Ribosomal protein L1p/L10e family WwMa_09240 PF00466 Ribosomal protein L10 WwMa_09250 PF16320 Ribosomal protein L7/L12 dimerisation domain WwMa_09250 PF00542 Ribosomal protein L7/L12 C-terminal domain WwMa_09260 PF04563 RNA polymerase beta subunit WwMa_09260 PF04983 RNA polymerase Rpb1, domain 3 WwMa_09260 PF04998 RNA polymerase Rpb1, domain 5 WwMa_09260 PF00623 RNA polymerase Rpb1, domain 2 WwMa_09260 PF04560 RNA polymerase Rpb2, domain 7 WwMa_09260 PF00562 RNA polymerase Rpb2, domain 6 WwMa_09260 PF10385 RNA polymerase beta subunit external 1 domain WwMa_09260 PF04565 RNA polymerase Rpb2, domain 3 WwMa_09260 PF04997 RNA polymerase Rpb1, domain 1 WwMa_09260 PF05000 RNA polymerase Rpb1, domain 4 WwMa_09260 PF04561 RNA polymerase Rpb2, domain 2 WwMa_09270 PF01207 Dihydrouridine synthase (Dus) WwMa_09290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WwMa_09290 PF02403 Seryl-tRNA synthetase N-terminal domain WwMa_09300 PF02843 Phosphoribosylglycinamide synthetase, C domain WwMa_09300 PF02844 Phosphoribosylglycinamide synthetase, N domain WwMa_09300 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WwMa_09320 PF00180 Isocitrate/isopropylmalate dehydrogenase WwMa_09320 PF18324 Hypothetical protein TT1725 WwMa_09340 PF00730 HhH-GPD superfamily base excision DNA repair protein WwMa_09340 PF00633 Helix-hairpin-helix motif WwMa_09340 PF10576 Iron-sulfur binding domain of endonuclease III WwMa_09350 PF02142 MGS-like domain WwMa_09350 PF01808 AICARFT/IMPCHase bienzyme WwMa_09360 PF00551 Formyl transferase WwMa_09360 PF02911 Formyl transferase, C-terminal domain WwMa_09370 PF00453 Ribosomal protein L20 WwMa_09380 PF01632 Ribosomal protein L35 WwMa_09420 PF02272 DHHA1 domain WwMa_09420 PF01411 tRNA synthetases class II (A) WwMa_09420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WwMa_09440 PF01676 Metalloenzyme superfamily WwMa_09440 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WwMa_09450 PF00698 Acyl transferase domain WwMa_09460 PF01197 Ribosomal protein L31 WwMa_09480 PF01548 Transposase WwMa_09480 PF02371 Transposase IS116/IS110/IS902 family WwMa_09500 PF13416 Bacterial extracellular solute-binding protein WwMa_09510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WwMa_09510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WwMa_09540 PF00625 Guanylate kinase WwMa_09560 PF02910 Fumarate reductase flavoprotein C-term WwMa_09560 PF00890 FAD binding domain WwMa_09580 PF00132 Bacterial transferase hexapeptide (six repeats) WwMa_09580 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WwMa_09580 PF14602 Hexapeptide repeat of succinyl-transferase WwMa_09640 PF08245 Mur ligase middle domain WwMa_09680 PF04002 RadC-like JAB domain WwMa_09700 PF01119 DNA mismatch repair protein, C-terminal domain WwMa_09700 PF08676 MutL C terminal dimerisation domain WwMa_09710 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_09720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WwMa_09720 PF01348 Type II intron maturase WwMa_09740 PF14602 Hexapeptide repeat of succinyl-transferase WwMa_09740 PF12804 MobA-like NTP transferase domain WwMa_09740 PF00132 Bacterial transferase hexapeptide (six repeats) WwMa_09750 PF01370 NAD dependent epimerase/dehydratase family WwMa_09790 PF00664 ABC transporter transmembrane region WwMa_09790 PF00005 ABC transporter WwMa_09800 PF01212 Beta-eliminating lyase WwMa_09810 PF01212 Beta-eliminating lyase WwMa_09830 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WwMa_09830 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WwMa_09830 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WwMa_09840 PF00892 EamA-like transporter family WwMa_09870 PF00121 Triosephosphate isomerase WwMa_09880 PF00398 Ribosomal RNA adenine dimethylase WwMa_09890 PF00571 CBS domain WwMa_09890 PF00478 IMP dehydrogenase / GMP reductase domain WwMa_09900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WwMa_09900 PF07498 Rho termination factor, N-terminal domain WwMa_09900 PF07497 Rho termination factor, RNA-binding domain WwMa_09940 PF00886 Ribosomal protein S16 WwMa_09950 PF00348 Polyprenyl synthetase WwMa_09960 PF01025 GrpE WwMa_09970 PF00579 tRNA synthetases class I (W and Y) WwMa_09990 PF02779 Transketolase, pyrimidine binding domain WwMa_09990 PF16870 2-oxoglutarate dehydrogenase C-terminal WwMa_09990 PF00676 Dehydrogenase E1 component WwMa_09990 PF16078 2-oxoglutarate dehydrogenase N-terminus WwMa_10060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WwMa_10070 PF13091 PLD-like domain WwMa_10090 PF01790 Prolipoprotein diacylglyceryl transferase WwMa_10100 PF01668 SmpB protein WwMa_10140 PF00551 Formyl transferase WwMa_10170 PF00675 Insulinase (Peptidase family M16) WwMa_10170 PF05193 Peptidase M16 inactive domain WwMa_10180 PF01252 Signal peptidase (SPase) II WwMa_10190 PF06574 FAD synthetase WwMa_10190 PF01687 Riboflavin kinase WwMa_10200 PF00462 Glutaredoxin WwMa_10220 PF03144 Elongation factor Tu domain 2 WwMa_10220 PF00009 Elongation factor Tu GTP binding domain WwMa_10220 PF14492 Elongation Factor G, domain II WwMa_10220 PF06421 GTP-binding protein LepA C-terminus WwMa_10220 PF00679 Elongation factor G C-terminus WwMa_10250 PF03741 Integral membrane protein TerC family WwMa_10250 PF03471 Transporter associated domain WwMa_10260 PF00117 Glutamine amidotransferase class-I WwMa_10260 PF02540 NAD synthase WwMa_10260 PF00958 GMP synthase C terminal domain WwMa_10270 PF00263 Bacterial type II and III secretion system protein WwMa_10270 PF03958 Bacterial type II/III secretion system short domain WwMa_10290 PF01578 Cytochrome C assembly protein WwMa_10300 PF03618 Kinase/pyrophosphorylase WwMa_10310 PF00444 Ribosomal protein L36 WwMa_10320 PF00270 DEAD/DEAH box helicase WwMa_10320 PF00271 Helicase conserved C-terminal domain WwMa_10320 PF17191 RecG wedge domain WwMa_10340 PF04055 Radical SAM superfamily WwMa_10340 PF00919 Uncharacterized protein family UPF0004 WwMa_10380 PF02355 Protein export membrane protein WwMa_10390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WwMa_10390 PF03900 Porphobilinogen deaminase, C-terminal domain WwMa_10400 PF01565 FAD binding domain WwMa_10400 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WwMa_10420 PF00375 Sodium:dicarboxylate symporter family WwMa_10430 PF00156 Phosphoribosyl transferase domain WwMa_10500 PF02371 Transposase IS116/IS110/IS902 family WwMa_10500 PF01548 Transposase WwMa_10600 PF03462 PCRF domain WwMa_10600 PF00472 RF-1 domain WwMa_10610 PF01926 50S ribosome-binding GTPase WwMa_10620 PF00696 Amino acid kinase family WwMa_10680 PF01297 Zinc-uptake complex component A periplasmic WwMa_10690 PF00005 ABC transporter WwMa_10700 PF03109 ABC1 family WwMa_10720 PF00471 Ribosomal protein L33 WwMa_10730 PF00575 S1 RNA binding domain WwMa_10730 PF10150 Ribonuclease E/G family WwMa_10730 PF12111 Polyribonucleotide phosphorylase C terminal WwMa_10740 PF00012 Hsp70 protein WwMa_10750 PF01722 BolA-like protein WwMa_10760 PF01053 Cys/Met metabolism PLP-dependent enzyme WwMa_10770 PF02875 Mur ligase family, glutamate ligase domain WwMa_10770 PF08245 Mur ligase middle domain WwMa_10800 PF01300 Telomere recombination WwMa_10810 PF09115 DNA polymerase III, delta subunit, C terminal WwMa_10840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WwMa_10840 PF00361 Proton-conducting membrane transporter WwMa_10840 PF13244 Domain of unknown function (DUF4040) WwMa_10850 PF00772 DnaB-like helicase N terminal domain WwMa_10850 PF03796 DnaB-like helicase C terminal domain WwMa_10890 PF01979 Amidohydrolase family WwMa_10900 PF01612 3'-5' exonuclease WwMa_10900 PF00570 HRDC domain WwMa_10910 PF01121 Dephospho-CoA kinase WwMa_10940 PF08264 Anticodon-binding domain of tRNA WwMa_10940 PF09334 tRNA synthetases class I (M) WwMa_11010 PF01040 UbiA prenyltransferase family WwMa_11020 PF02033 Ribosome-binding factor A WwMa_11030 PF11987 Translation-initiation factor 2 WwMa_11030 PF04760 Translation initiation factor IF-2, N-terminal region WwMa_11030 PF00009 Elongation factor Tu GTP binding domain WwMa_11040 PF08529 NusA N-terminal domain WwMa_11040 PF00575 S1 RNA binding domain WwMa_11040 PF13184 NusA-like KH domain WwMa_11070 PF00120 Glutamine synthetase, catalytic domain