locus-tag class description wYak_00010 PF00308 Bacterial dnaA protein wYak_00010 PF08299 Bacterial dnaA protein helix-turn-helix wYak_00010 PF11638 DnaA N-terminal domain wYak_00030 PF00925 GTP cyclohydrolase II wYak_00040 PF04335 VirB8 protein wYak_00070 PF00437 Type II/IV secretion system protein wYak_00080 PF02534 Type IV secretory system Conjugative DNA transfer wYak_00100 PF13847 Methyltransferase domain wYak_00100 PF17827 PrmC N-terminal domain wYak_00110 PF00164 Ribosomal protein S12/S23 wYak_00120 PF00177 Ribosomal protein S7p/S5e wYak_00130 PF00679 Elongation factor G C-terminus wYak_00130 PF14492 Elongation Factor G, domain II wYak_00130 PF03764 Elongation factor G, domain IV wYak_00130 PF00009 Elongation factor Tu GTP binding domain wYak_00130 PF03144 Elongation factor Tu domain 2 wYak_00140 PF00009 Elongation factor Tu GTP binding domain wYak_00140 PF03144 Elongation factor Tu domain 2 wYak_00140 PF03143 Elongation factor Tu C-terminal domain wYak_00160 PF02357 Transcription termination factor nusG wYak_00160 PF00467 KOW motif wYak_00170 PF00298 Ribosomal protein L11, RNA binding domain wYak_00170 PF03946 Ribosomal protein L11, N-terminal domain wYak_00180 PF00687 Ribosomal protein L1p/L10e family wYak_00190 PF00466 Ribosomal protein L10 wYak_00200 PF00542 Ribosomal protein L7/L12 C-terminal domain wYak_00200 PF16320 Ribosomal protein L7/L12 dimerisation domain wYak_00210 PF05000 RNA polymerase Rpb1, domain 4 wYak_00210 PF00562 RNA polymerase Rpb2, domain 6 wYak_00210 PF10385 RNA polymerase beta subunit external 1 domain wYak_00210 PF04565 RNA polymerase Rpb2, domain 3 wYak_00210 PF04561 RNA polymerase Rpb2, domain 2 wYak_00210 PF04983 RNA polymerase Rpb1, domain 3 wYak_00210 PF04998 RNA polymerase Rpb1, domain 5 wYak_00210 PF04560 RNA polymerase Rpb2, domain 7 wYak_00210 PF00623 RNA polymerase Rpb1, domain 2 wYak_00210 PF04997 RNA polymerase Rpb1, domain 1 wYak_00210 PF04563 RNA polymerase beta subunit wYak_00220 PF01207 Dihydrouridine synthase (Dus) wYak_00240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wYak_00240 PF02403 Seryl-tRNA synthetase N-terminal domain wYak_00250 PF02843 Phosphoribosylglycinamide synthetase, C domain wYak_00250 PF02844 Phosphoribosylglycinamide synthetase, N domain wYak_00250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain wYak_00270 PF01348 Type II intron maturase wYak_00270 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_00300 PF01728 FtsJ-like methyltransferase wYak_00310 PF10691 Protein of unknown function (DUF2497) wYak_00330 PF00572 Ribosomal protein L13 wYak_00340 PF00380 Ribosomal protein S9/S16 wYak_00360 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ wYak_00390 PF08264 Anticodon-binding domain of tRNA wYak_00390 PF09334 tRNA synthetases class I (M) wYak_00390 PF13603 Leucyl-tRNA synthetase, Domain 2 wYak_00390 PF00133 tRNA synthetases class I (I, L, M and V) wYak_00400 PF01551 Peptidase family M23 wYak_00420 PF00216 Bacterial DNA-binding protein wYak_00440 PF00883 Cytosol aminopeptidase family, catalytic domain wYak_00440 PF02789 Cytosol aminopeptidase family, N-terminal domain wYak_00510 PF00684 DnaJ central domain wYak_00510 PF01556 DnaJ C terminal domain wYak_00510 PF00226 DnaJ domain wYak_00520 PF12706 Beta-lactamase superfamily domain wYak_00520 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain wYak_00520 PF17770 Ribonuclease J C-terminal domain wYak_00530 PF07676 WD40-like Beta Propeller Repeat wYak_00530 PF04052 TolB amino-terminal domain wYak_00540 PF02686 Glu-tRNAGln amidotransferase C subunit wYak_00550 PF14572 Phosphoribosyl synthetase-associated domain wYak_00550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase wYak_00600 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_00600 PF01348 Type II intron maturase wYak_00610 PF04055 Radical SAM superfamily wYak_00610 PF00919 Uncharacterized protein family UPF0004 wYak_00650 PF03330 Lytic transglycolase wYak_00660 PF08245 Mur ligase middle domain wYak_00660 PF02875 Mur ligase family, glutamate ligase domain wYak_00660 PF01225 Mur ligase family, catalytic domain wYak_00670 PF00113 Enolase, C-terminal TIM barrel domain wYak_00670 PF03952 Enolase, N-terminal domain wYak_00680 PF01018 GTP1/OBG wYak_00680 PF01926 50S ribosome-binding GTPase wYak_00690 PF10415 Fumarase C C-terminus wYak_00690 PF00206 Lyase wYak_00700 PF00462 Glutaredoxin wYak_00730 PF01515 Phosphate acetyl/butaryl transferase wYak_00730 PF00390 Malic enzyme, N-terminal domain wYak_00730 PF03949 Malic enzyme, NAD binding domain wYak_00740 PF01066 CDP-alcohol phosphatidyltransferase wYak_00760 PF13525 Outer membrane lipoprotein wYak_00770 PF01709 Transcriptional regulator wYak_00780 PF01476 LysM domain wYak_00780 PF08525 Opacity-associated protein A N-terminal motif wYak_00780 PF01551 Peptidase family M23 wYak_00830 PF00679 Elongation factor G C-terminus wYak_00830 PF14492 Elongation Factor G, domain II wYak_00830 PF00009 Elongation factor Tu GTP binding domain wYak_00830 PF03144 Elongation factor Tu domain 2 wYak_00830 PF06421 GTP-binding protein LepA C-terminus wYak_00850 PF00364 Biotin-requiring enzyme wYak_00850 PF02779 Transketolase, pyrimidine binding domain wYak_00850 PF02780 Transketolase, C-terminal domain wYak_00860 PF01434 Peptidase family M41 wYak_00860 PF06480 FtsH Extracellular wYak_00860 PF17862 AAA+ lid domain wYak_00860 PF00004 ATPase family associated with various cellular activities (AAA) wYak_00880 PF00083 Sugar (and other) transporter wYak_00880 PF07690 Major Facilitator Superfamily wYak_00890 PF14437 MafB19-like deaminase wYak_00900 PF00117 Glutamine amidotransferase class-I wYak_00900 PF06418 CTP synthase N-terminus wYak_00940 PF00133 tRNA synthetases class I (I, L, M and V) wYak_00940 PF08264 Anticodon-binding domain of tRNA wYak_00970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family wYak_01000 PF00005 ABC transporter wYak_01010 PF00528 Binding-protein-dependent transport system inner membrane component wYak_01020 PF00497 Bacterial extracellular solute-binding proteins, family 3 wYak_01030 PF01316 Arginine repressor, DNA binding domain wYak_01030 PF02863 Arginine repressor, C-terminal domain wYak_01040 PF00902 Sec-independent protein translocase protein (TatC) wYak_01050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain wYak_01050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain wYak_01080 PF13735 tRNA nucleotidyltransferase domain 2 putative wYak_01080 PF12627 Probable RNA and SrmB- binding site of polymerase A wYak_01080 PF01743 Poly A polymerase head domain wYak_01100 PF06071 Protein of unknown function (DUF933) wYak_01100 PF01926 50S ribosome-binding GTPase wYak_01130 PF00625 Guanylate kinase wYak_01150 PF02910 Fumarate reductase flavoprotein C-term wYak_01150 PF00890 FAD binding domain wYak_01160 PF00749 tRNA synthetases class I (E and Q), catalytic domain wYak_01180 PF00289 Biotin carboxylase, N-terminal domain wYak_01180 PF00364 Biotin-requiring enzyme wYak_01180 PF02785 Biotin carboxylase C-terminal domain wYak_01180 PF18140 Propionyl-coenzyme A carboxylase BT domain wYak_01180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain wYak_01190 PF02628 Cytochrome oxidase assembly protein wYak_01230 PF00137 ATP synthase subunit C wYak_01240 PF00119 ATP synthase A chain wYak_01260 PF03483 B3/4 domain wYak_01260 PF03484 tRNA synthetase B5 domain wYak_01260 PF03147 Ferredoxin-fold anticodon binding domain wYak_01260 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain wYak_01260 PF01588 Putative tRNA binding domain wYak_01280 PF08264 Anticodon-binding domain of tRNA wYak_01280 PF00133 tRNA synthetases class I (I, L, M and V) wYak_01290 PF00854 POT family wYak_01300 PF04055 Radical SAM superfamily wYak_01300 PF01938 TRAM domain wYak_01300 PF00919 Uncharacterized protein family UPF0004 wYak_01310 PF03653 Uncharacterised protein family (UPF0093) wYak_01320 PF00676 Dehydrogenase E1 component wYak_01330 PF01479 S4 domain wYak_01330 PF00849 RNA pseudouridylate synthase wYak_01340 PF00083 Sugar (and other) transporter wYak_01340 PF08946 Osmosensory transporter coiled coil wYak_01350 PF01336 OB-fold nucleic acid binding domain wYak_01350 PF00152 tRNA synthetases class II (D, K and N) wYak_01350 PF02938 GAD domain wYak_01370 PF00005 ABC transporter wYak_01410 PF00750 tRNA synthetases class I (R) wYak_01410 PF05746 DALR anticodon binding domain wYak_01410 PF03485 Arginyl tRNA synthetase N terminal domain wYak_01430 PF00005 ABC transporter wYak_01430 PF00664 ABC transporter transmembrane region wYak_01460 PF01098 Cell cycle protein wYak_01470 PF01209 ubiE/COQ5 methyltransferase family wYak_01480 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family wYak_01480 PF04055 Radical SAM superfamily wYak_01490 PF00830 Ribosomal L28 family wYak_01510 PF04384 Iron-sulphur cluster assembly wYak_01520 PF01479 S4 domain wYak_01520 PF00163 Ribosomal protein S4/S9 N-terminal domain wYak_01530 PF00456 Transketolase, thiamine diphosphate binding domain wYak_01530 PF02780 Transketolase, C-terminal domain wYak_01530 PF02779 Transketolase, pyrimidine binding domain wYak_01550 PF07690 Major Facilitator Superfamily wYak_01590 PF00692 dUTPase wYak_01630 PF01769 Divalent cation transporter wYak_01630 PF00571 CBS domain wYak_01630 PF03448 MgtE intracellular N domain wYak_01640 PF03462 PCRF domain wYak_01640 PF00472 RF-1 domain wYak_01660 PF00005 ABC transporter wYak_01670 PF01113 Dihydrodipicolinate reductase, N-terminus wYak_01670 PF05173 Dihydrodipicolinate reductase, C-terminus wYak_01710 PF00950 ABC 3 transport family wYak_01730 PF00288 GHMP kinases N terminal domain wYak_01730 PF08544 GHMP kinases C terminal wYak_01740 PF13361 UvrD-like helicase C-terminal domain wYak_01740 PF00580 UvrD/REP helicase N-terminal domain wYak_01740 PF12705 PD-(D/E)XK nuclease superfamily wYak_01760 PF04002 RadC-like JAB domain wYak_01770 PF06271 RDD family wYak_01780 PF00772 DnaB-like helicase N terminal domain wYak_01780 PF03796 DnaB-like helicase C terminal domain wYak_01800 PF08264 Anticodon-binding domain of tRNA wYak_01800 PF09334 tRNA synthetases class I (M) wYak_01820 PF08241 Methyltransferase domain wYak_01830 PF01807 CHC2 zinc finger wYak_01830 PF08275 DNA primase catalytic core, N-terminal domain wYak_01830 PF13662 Toprim domain wYak_01840 PF13784 Fic/DOC family N-terminal wYak_01840 PF02661 Fic/DOC family wYak_01850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion wYak_01880 PF00444 Ribosomal protein L36 wYak_01890 PF03618 Kinase/pyrophosphorylase wYak_01900 PF01578 Cytochrome C assembly protein wYak_01930 PF00709 Adenylosuccinate synthetase wYak_01960 PF01176 Translation initiation factor 1A / IF-1 wYak_01970 PF02545 Maf-like protein wYak_01990 PF01235 Sodium:alanine symporter family wYak_02080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain wYak_02080 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_02100 PF04101 Glycosyltransferase family 28 C-terminal domain wYak_02100 PF03033 Glycosyltransferase family 28 N-terminal domain wYak_02110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain wYak_02110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain wYak_02120 PF04972 BON domain wYak_02130 PF05697 Bacterial trigger factor protein (TF) wYak_02130 PF05698 Bacterial trigger factor protein (TF) C-terminus wYak_02130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase wYak_02140 PF00574 Clp protease wYak_02150 PF06689 ClpX C4-type zinc finger wYak_02150 PF10431 C-terminal, D2-small domain, of ClpB protein wYak_02150 PF07724 AAA domain (Cdc48 subfamily) wYak_02160 PF02190 ATP-dependent protease La (LON) substrate-binding domain wYak_02160 PF00004 ATPase family associated with various cellular activities (AAA) wYak_02160 PF05362 Lon protease (S16) C-terminal proteolytic domain wYak_02180 PF00115 Cytochrome C and Quinol oxidase polypeptide I wYak_02190 PF17768 RecJ OB domain wYak_02190 PF02272 DHHA1 domain wYak_02190 PF01368 DHH family wYak_02200 PF01571 Aminomethyltransferase folate-binding domain wYak_02210 PF00166 Chaperonin 10 Kd subunit wYak_02220 PF00118 TCP-1/cpn60 chaperonin family wYak_02240 PF00075 RNase H wYak_02250 PF01040 UbiA prenyltransferase family wYak_02260 PF00115 Cytochrome C and Quinol oxidase polypeptide I wYak_02270 PF02790 Cytochrome C oxidase subunit II, transmembrane domain wYak_02270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain wYak_02350 PF00239 Resolvase, N terminal domain wYak_02350 PF02796 Helix-turn-helix domain of resolvase wYak_02390 PF01609 Transposase DDE domain wYak_02400 PF02646 RmuC family wYak_02420 PF00596 Class II Aldolase and Adducin N-terminal domain wYak_02440 PF00814 Glycoprotease family wYak_02460 PF00268 Ribonucleotide reductase, small chain wYak_02490 PF06250 YhcG PDDEXK nuclease domain wYak_02490 PF17761 DUF1016 N-terminal domain wYak_02510 PF02565 Recombination protein O C terminal wYak_02510 PF11967 Recombination protein O N terminal wYak_02520 PF00990 Diguanylate cyclase, GGDEF domain wYak_02520 PF00072 Response regulator receiver domain wYak_02540 PF05088 Bacterial NAD-glutamate dehydrogenase wYak_02550 PF00004 ATPase family associated with various cellular activities (AAA) wYak_02550 PF17871 AAA lid domain wYak_02550 PF02861 Clp amino terminal domain, pathogenicity island component wYak_02550 PF10431 C-terminal, D2-small domain, of ClpB protein wYak_02550 PF07724 AAA domain (Cdc48 subfamily) wYak_02580 PF00679 Elongation factor G C-terminus wYak_02580 PF03144 Elongation factor Tu domain 2 wYak_02580 PF00009 Elongation factor Tu GTP binding domain wYak_02590 PF00156 Phosphoribosyl transferase domain wYak_02600 PF00375 Sodium:dicarboxylate symporter family wYak_02610 PF01979 Amidohydrolase family wYak_02630 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal wYak_02630 PF01578 Cytochrome C assembly protein wYak_02650 PF07549 SecD/SecF GG Motif wYak_02650 PF02355 Protein export membrane protein wYak_02670 PF02096 60Kd inner membrane protein wYak_02670 PF14849 YidC periplasmic domain wYak_02680 PF00885 6,7-dimethyl-8-ribityllumazine synthase wYak_02690 PF01029 NusB family wYak_02720 PF00692 dUTPase wYak_02730 PF00696 Amino acid kinase family wYak_02740 PF01926 50S ribosome-binding GTPase wYak_02750 PF03462 PCRF domain wYak_02750 PF00472 RF-1 domain wYak_02760 PF07690 Major Facilitator Superfamily wYak_02800 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain wYak_02810 PF02874 ATP synthase alpha/beta family, beta-barrel domain wYak_02810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wYak_02820 PF00528 Binding-protein-dependent transport system inner membrane component wYak_02830 PF00468 Ribosomal protein L34 wYak_02860 PF01209 ubiE/COQ5 methyltransferase family wYak_02870 PF00317 Ribonucleotide reductase, all-alpha domain wYak_02870 PF02867 Ribonucleotide reductase, barrel domain wYak_02870 PF03477 ATP cone domain wYak_02880 PF02540 NAD synthase wYak_02880 PF00958 GMP synthase C terminal domain wYak_02880 PF00117 Glutamine amidotransferase class-I wYak_02890 PF03471 Transporter associated domain wYak_02890 PF00571 CBS domain wYak_02890 PF03741 Integral membrane protein TerC family wYak_02920 PF01624 MutS domain I wYak_02920 PF00488 MutS domain V wYak_02920 PF05190 MutS family domain IV wYak_02920 PF05192 MutS domain III wYak_02920 PF05188 MutS domain II wYak_02930 PF00570 HRDC domain wYak_02930 PF01612 3'-5' exonuclease wYak_02940 PF01121 Dephospho-CoA kinase wYak_02990 PF10609 NUBPL iron-transfer P-loop NTPase wYak_03010 PF01494 FAD binding domain wYak_03030 PF01195 Peptidyl-tRNA hydrolase wYak_03040 PF01386 Ribosomal L25p family wYak_03040 PF14693 Ribosomal protein TL5, C-terminal domain wYak_03070 PF01795 MraW methylase family wYak_03080 PF07690 Major Facilitator Superfamily wYak_03080 PF00083 Sugar (and other) transporter wYak_03090 PF00557 Metallopeptidase family M24 wYak_03100 PF02491 SHS2 domain inserted in FTSA wYak_03110 PF01327 Polypeptide deformylase wYak_03120 PF03167 Uracil DNA glycosylase superfamily wYak_03140 PF00384 Molybdopterin oxidoreductase wYak_03140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region wYak_03140 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal wYak_03150 PF00146 NADH dehydrogenase wYak_03160 PF00490 Delta-aminolevulinic acid dehydratase wYak_03180 PF02091 Glycyl-tRNA synthetase alpha subunit wYak_03190 PF05746 DALR anticodon binding domain wYak_03190 PF02092 Glycyl-tRNA synthetase beta subunit wYak_03200 PF08459 UvrC Helix-hairpin-helix N-terminal wYak_03200 PF02151 UvrB/uvrC motif wYak_03200 PF01541 GIY-YIG catalytic domain wYak_03210 PF08402 TOBE domain wYak_03210 PF00005 ABC transporter wYak_03220 PF02416 mttA/Hcf106 family wYak_03240 PF06055 Exopolysaccharide synthesis, ExoD wYak_03250 PF09190 DALR domain wYak_03250 PF01406 tRNA synthetases class I (C) catalytic domain wYak_03280 PF02934 GatB/GatE catalytic domain wYak_03280 PF02637 GatB domain wYak_03290 PF03652 Holliday junction resolvase wYak_03300 PF02075 Crossover junction endodeoxyribonuclease RuvC wYak_03310 PF00510 Cytochrome c oxidase subunit III wYak_03360 PF00438 S-adenosylmethionine synthetase, N-terminal domain wYak_03360 PF02773 S-adenosylmethionine synthetase, C-terminal domain wYak_03360 PF02772 S-adenosylmethionine synthetase, central domain wYak_03370 PF01016 Ribosomal L27 protein wYak_03380 PF00829 Ribosomal prokaryotic L21 protein wYak_03390 PF00132 Bacterial transferase hexapeptide (six repeats) wYak_03390 PF14602 Hexapeptide repeat of succinyl-transferase wYak_03390 PF12804 MobA-like NTP transferase domain wYak_03400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain wYak_03400 PF01409 tRNA synthetases class II core domain (F) wYak_03420 PF00677 Lumazine binding domain wYak_03510 PF02325 YGGT family wYak_03520 PF13491 4TM region of DNA translocase FtsK/SpoIIIE wYak_03520 PF17854 FtsK alpha domain wYak_03520 PF09397 Ftsk gamma domain wYak_03520 PF01580 FtsK/SpoIIIE family wYak_03550 PF04551 GcpE protein wYak_03560 PF01609 Transposase DDE domain wYak_03580 PF01751 Toprim domain wYak_03580 PF00986 DNA gyrase B subunit, carboxyl terminus wYak_03580 PF00204 DNA gyrase B wYak_03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wYak_03590 PF02630 SCO1/SenC wYak_03600 PF00929 Exonuclease wYak_03620 PF02556 Preprotein translocase subunit SecB wYak_03630 PF00330 Aconitase family (aconitate hydratase) wYak_03630 PF00694 Aconitase C-terminal domain wYak_03640 PF00171 Aldehyde dehydrogenase family wYak_03640 PF01619 Proline dehydrogenase wYak_03640 PF14850 DNA-binding domain of Proline dehydrogenase wYak_03640 PF18327 Proline utilization A proline dehydrogenase N-terminal domain wYak_03660 PF00893 Small Multidrug Resistance protein wYak_03670 PF00893 Small Multidrug Resistance protein wYak_03680 PF00768 D-alanyl-D-alanine carboxypeptidase wYak_03680 PF07943 Penicillin-binding protein 5, C-terminal domain wYak_03690 PF08478 POTRA domain, FtsQ-type wYak_03690 PF03799 Cell division protein FtsQ wYak_03700 PF07478 D-ala D-ala ligase C-terminus wYak_03700 PF01820 D-ala D-ala ligase N-terminus wYak_03720 PF11953 Domain of unknown function (DUF3470) wYak_03720 PF00037 4Fe-4S binding domain wYak_03730 PF02481 DNA recombination-mediator protein A wYak_03730 PF17782 DprA winged helix domain wYak_03740 PF00121 Triosephosphate isomerase wYak_03750 PF00398 Ribosomal RNA adenine dimethylase wYak_03760 PF00571 CBS domain wYak_03760 PF00478 IMP dehydrogenase / GMP reductase domain wYak_03780 PF02355 Protein export membrane protein wYak_03830 PF01609 Transposase DDE domain wYak_03880 PF01348 Type II intron maturase wYak_03880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_03890 PF01425 Amidase wYak_03900 PF01609 Transposase DDE domain wYak_03910 PF01348 Type II intron maturase wYak_03910 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_03960 PF00529 HlyD membrane-fusion protein of T1SS wYak_03960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion wYak_04000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase wYak_04000 PF00925 GTP cyclohydrolase II wYak_04010 PF01272 Transcription elongation factor, GreA/GreB, C-term wYak_04010 PF03449 Transcription elongation factor, N-terminal wYak_04020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wYak_04020 PF00306 ATP synthase alpha/beta chain, C terminal domain wYak_04020 PF02874 ATP synthase alpha/beta family, beta-barrel domain wYak_04030 PF00213 ATP synthase delta (OSCP) subunit wYak_04040 PF02021 Uncharacterised protein family UPF0102 wYak_04050 PF01196 Ribosomal protein L17 wYak_04060 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain wYak_04060 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain wYak_04060 PF01000 RNA polymerase Rpb3/RpoA insert domain wYak_04070 PF00411 Ribosomal protein S11 wYak_04080 PF00416 Ribosomal protein S13/S18 wYak_04100 PF00344 SecY translocase wYak_04110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A wYak_04120 PF00333 Ribosomal protein S5, N-terminal domain wYak_04120 PF03719 Ribosomal protein S5, C-terminal domain wYak_04130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast wYak_04140 PF00347 Ribosomal protein L6 wYak_04150 PF00410 Ribosomal protein S8 wYak_04160 PF00253 Ribosomal protein S14p/S29e wYak_04170 PF00281 Ribosomal protein L5 wYak_04170 PF00673 ribosomal L5P family C-terminus wYak_04180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 wYak_04190 PF00238 Ribosomal protein L14p/L23e wYak_04200 PF00366 Ribosomal protein S17 wYak_04210 PF00831 Ribosomal L29 protein wYak_04220 PF00252 Ribosomal protein L16p/L10e wYak_04230 PF00189 Ribosomal protein S3, C-terminal domain wYak_04230 PF07650 KH domain wYak_04240 PF00237 Ribosomal protein L22p/L17e wYak_04250 PF00203 Ribosomal protein S19 wYak_04260 PF03947 Ribosomal Proteins L2, C-terminal domain wYak_04260 PF00181 Ribosomal Proteins L2, RNA binding domain wYak_04270 PF00276 Ribosomal protein L23 wYak_04280 PF00573 Ribosomal protein L4/L1 family wYak_04290 PF00297 Ribosomal protein L3 wYak_04300 PF00338 Ribosomal protein S10p/S20e wYak_04310 PF03144 Elongation factor Tu domain 2 wYak_04310 PF00009 Elongation factor Tu GTP binding domain wYak_04310 PF03143 Elongation factor Tu C-terminal domain wYak_04320 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain wYak_04320 PF00117 Glutamine amidotransferase class-I wYak_04350 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded wYak_04370 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain wYak_04370 PF02896 PEP-utilising enzyme, TIM barrel domain wYak_04370 PF00391 PEP-utilising enzyme, mobile domain wYak_04430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain wYak_04430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III wYak_04430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II wYak_04430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I wYak_04460 PF00814 Glycoprotease family wYak_04480 PF00266 Aminotransferase class-V wYak_04490 PF02129 X-Pro dipeptidyl-peptidase (S15 family) wYak_04510 PF00005 ABC transporter wYak_04520 PF01521 Iron-sulphur cluster biosynthesis wYak_04530 PF01966 HD domain wYak_04530 PF13286 Phosphohydrolase-associated domain wYak_04540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region wYak_04540 PF01872 RibD C-terminal domain wYak_04560 PF00834 Ribulose-phosphate 3 epimerase family wYak_04580 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal wYak_04580 PF14602 Hexapeptide repeat of succinyl-transferase wYak_04580 PF00132 Bacterial transferase hexapeptide (six repeats) wYak_04630 PF00905 Penicillin binding protein transpeptidase domain wYak_04630 PF03717 Penicillin-binding Protein dimerisation domain wYak_04640 PF01522 Polysaccharide deacetylase wYak_04640 PF00457 Glycosyl hydrolases family 11 wYak_04640 PF03422 Carbohydrate binding module (family 6) wYak_04650 PF13335 Magnesium chelatase, subunit ChlI C-terminal wYak_04650 PF01078 Magnesium chelatase, subunit ChlI wYak_04670 PF00091 Tubulin/FtsZ family, GTPase domain wYak_04670 PF12327 FtsZ family, C-terminal domain wYak_04700 PF02130 Uncharacterized protein family UPF0054 wYak_04710 PF13085 2Fe-2S iron-sulfur cluster binding domain wYak_04740 PF04608 Phosphatidylglycerophosphatase A wYak_04750 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus wYak_04750 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus wYak_04760 PF00072 Response regulator receiver domain wYak_04760 PF00486 Transcriptional regulatory protein, C terminal wYak_04790 PF01702 Queuine tRNA-ribosyltransferase wYak_04810 PF00675 Insulinase (Peptidase family M16) wYak_04810 PF05193 Peptidase M16 inactive domain wYak_04820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain wYak_04820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain wYak_04830 PF01654 Cytochrome bd terminal oxidase subunit I wYak_04840 PF02322 Cytochrome bd terminal oxidase subunit II wYak_04860 PF01926 50S ribosome-binding GTPase wYak_04860 PF07650 KH domain wYak_04920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain wYak_04920 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_04930 PF00589 Phage integrase family wYak_04930 PF02899 Phage integrase, N-terminal SAM-like domain wYak_04950 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_04960 PF00578 AhpC/TSA family wYak_04960 PF10417 C-terminal domain of 1-Cys peroxiredoxin wYak_04980 PF00462 Glutaredoxin wYak_04990 PF01687 Riboflavin kinase wYak_04990 PF06574 FAD synthetase wYak_05000 PF01252 Signal peptidase (SPase) II wYak_05010 PF05193 Peptidase M16 inactive domain wYak_05010 PF00675 Insulinase (Peptidase family M16) wYak_05030 PF00551 Formyl transferase wYak_05090 PF01668 SmpB protein wYak_05100 PF01790 Prolipoprotein diacylglyceryl transferase wYak_05110 PF00005 ABC transporter wYak_05110 PF00664 ABC transporter transmembrane region wYak_05150 PF00436 Single-strand binding protein family wYak_05160 PF00701 Dihydrodipicolinate synthetase family wYak_05170 PF01653 NAD-dependent DNA ligase adenylation domain wYak_05170 PF03120 NAD-dependent DNA ligase OB-fold domain wYak_05170 PF00533 BRCA1 C Terminus (BRCT) domain wYak_05170 PF12826 Helix-hairpin-helix motif wYak_05170 PF03119 NAD-dependent DNA ligase C4 zinc finger domain wYak_05180 PF00749 tRNA synthetases class I (E and Q), catalytic domain wYak_05190 PF14579 Helix-hairpin-helix motif wYak_05190 PF02811 PHP domain wYak_05190 PF07733 Bacterial DNA polymerase III alpha NTPase domain wYak_05190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain wYak_05200 PF01250 Ribosomal protein S6 wYak_05210 PF01084 Ribosomal protein S18 wYak_05220 PF03948 Ribosomal protein L9, C-terminal domain wYak_05220 PF01281 Ribosomal protein L9, N-terminal domain wYak_05230 PF00206 Lyase wYak_05230 PF10397 Adenylosuccinate lyase C-terminus wYak_05240 PF13685 Iron-containing alcohol dehydrogenase wYak_05250 PF07687 Peptidase dimerisation domain wYak_05250 PF01546 Peptidase family M20/M25/M40 wYak_05260 PF10576 Iron-sulfur binding domain of endonuclease III wYak_05260 PF00730 HhH-GPD superfamily base excision DNA repair protein wYak_05260 PF00633 Helix-hairpin-helix motif wYak_05280 PF18324 Hypothetical protein TT1725 wYak_05280 PF00180 Isocitrate/isopropylmalate dehydrogenase wYak_05310 PF07497 Rho termination factor, RNA-binding domain wYak_05310 PF07498 Rho termination factor, N-terminal domain wYak_05310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain wYak_05330 PF00639 PPIC-type PPIASE domain wYak_05340 PF00886 Ribosomal protein S16 wYak_05350 PF00348 Polyprenyl synthetase wYak_05360 PF01025 GrpE wYak_05370 PF00579 tRNA synthetases class I (W and Y) wYak_05390 PF00034 Cytochrome c wYak_05440 PF03129 Anticodon binding domain wYak_05440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wYak_05450 PF01648 4'-phosphopantetheinyl transferase superfamily wYak_05460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wYak_05460 PF13244 Domain of unknown function (DUF4040) wYak_05460 PF00361 Proton-conducting membrane transporter wYak_05520 PF01300 Telomere recombination wYak_05560 PF00270 DEAD/DEAH box helicase wYak_05560 PF00271 Helicase conserved C-terminal domain wYak_05560 PF17191 RecG wedge domain wYak_05620 PF01145 SPFH domain / Band 7 family wYak_05630 PF01145 SPFH domain / Band 7 family wYak_05640 PF13180 PDZ domain wYak_05680 PF00271 Helicase conserved C-terminal domain wYak_05680 PF04851 Type III restriction enzyme, res subunit wYak_05680 PF17757 UvrB interaction domain wYak_05680 PF02151 UvrB/uvrC motif wYak_05680 PF12344 Ultra-violet resistance protein B wYak_05710 PF03918 Cytochrome C biogenesis protein wYak_05730 PF00111 2Fe-2S iron-sulfur cluster binding domain wYak_05740 PF08245 Mur ligase middle domain wYak_05790 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wYak_05800 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wYak_05810 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wYak_05820 PF04610 TrbL/VirB6 plasmid conjugal transfer protein wYak_05830 PF03135 CagE, TrbE, VirB family, component of type IV transporter system wYak_05850 PF01921 tRNA synthetases class I (K) wYak_05860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain wYak_05860 PF01411 tRNA synthetases class II (A) wYak_05860 PF02272 DHHA1 domain wYak_05880 PF01632 Ribosomal protein L35 wYak_05890 PF00453 Ribosomal protein L20 wYak_05900 PF00551 Formyl transferase wYak_05900 PF02911 Formyl transferase, C-terminal domain wYak_05910 PF02142 MGS-like domain wYak_05910 PF01808 AICARFT/IMPCHase bienzyme wYak_05920 PF01676 Metalloenzyme superfamily wYak_05920 PF06415 BPG-independent PGAM N-terminus (iPGM_N) wYak_05930 PF00698 Acyl transferase domain wYak_05940 PF01197 Ribosomal protein L31 wYak_05950 PF01513 ATP-NAD kinase wYak_06010 PF00085 Thioredoxin wYak_06020 PF03070 TENA/THI-4/PQQC family wYak_06040 PF00809 Pterin binding enzyme wYak_06040 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) wYak_06050 PF00186 Dihydrofolate reductase wYak_06070 PF18073 Rubredoxin metal binding domain wYak_06080 PF00448 SRP54-type protein, GTPase domain wYak_06080 PF02881 SRP54-type protein, helical bundle domain wYak_06090 PF01592 NifU-like N terminal domain wYak_06100 PF01521 Iron-sulphur cluster biosynthesis wYak_06110 PF07743 HSCB C-terminal oligomerisation domain wYak_06120 PF00012 Hsp70 protein wYak_06130 PF10502 Signal peptidase, peptidase S26 wYak_06140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain wYak_06140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain wYak_06190 PF01509 TruB family pseudouridylate synthase (N terminal domain) wYak_06190 PF16198 tRNA pseudouridylate synthase B C-terminal domain wYak_06200 PF00312 Ribosomal protein S15 wYak_06210 PF00575 S1 RNA binding domain wYak_06210 PF03725 3' exoribonuclease family, domain 2 wYak_06210 PF01138 3' exoribonuclease family, domain 1 wYak_06210 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain wYak_06210 PF00013 KH domain wYak_06280 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain wYak_06280 PF02769 AIR synthase related protein, C-terminal domain wYak_06280 PF00586 AIR synthase related protein, N-terminal domain wYak_06300 PF17760 UvrA interaction domain wYak_06300 PF17755 UvrA DNA-binding domain wYak_06380 PF03100 CcmE wYak_06400 PF08279 HTH domain wYak_06400 PF03099 Biotin/lipoate A/B protein ligase family wYak_06400 PF02237 Biotin protein ligase C terminal domain wYak_06400 PF03099 Biotin/lipoate A/B protein ligase family wYak_06400 PF08279 HTH domain wYak_06400 PF02237 Biotin protein ligase C terminal domain wYak_06410 PF00361 Proton-conducting membrane transporter wYak_06420 PF00361 Proton-conducting membrane transporter wYak_06430 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wYak_06430 PF00361 Proton-conducting membrane transporter wYak_06440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L wYak_06450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 wYak_06470 PF00580 UvrD/REP helicase N-terminal domain wYak_06470 PF13361 UvrD-like helicase C-terminal domain wYak_06500 PF00696 Amino acid kinase family wYak_06500 PF01842 ACT domain wYak_06500 PF13840 ACT domain wYak_06520 PF13520 Amino acid permease wYak_06550 PF02774 Semialdehyde dehydrogenase, dimerisation domain wYak_06550 PF01118 Semialdehyde dehydrogenase, NAD binding domain wYak_06570 PF08032 RNA 2'-O ribose methyltransferase substrate binding wYak_06570 PF00588 SpoU rRNA Methylase family wYak_06580 PF01027 Inhibitor of apoptosis-promoting Bax1 wYak_06590 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 wYak_06600 PF00107 Zinc-binding dehydrogenase wYak_06600 PF08240 Alcohol dehydrogenase GroES-like domain wYak_06660 PF03109 ABC1 family wYak_06670 PF00005 ABC transporter wYak_06680 PF01297 Zinc-uptake complex component A periplasmic wYak_06710 PF00471 Ribosomal protein L33 wYak_06720 PF10150 Ribonuclease E/G family wYak_06720 PF12111 Polyribonucleotide phosphorylase C terminal wYak_06720 PF00575 S1 RNA binding domain wYak_06730 PF00012 Hsp70 protein wYak_06750 PF01053 Cys/Met metabolism PLP-dependent enzyme wYak_06760 PF08245 Mur ligase middle domain wYak_06760 PF02875 Mur ligase family, glutamate ligase domain wYak_06830 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit wYak_06830 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region wYak_06830 PF10531 SLBB domain wYak_06840 PF00707 Translation initiation factor IF-3, C-terminal domain wYak_06840 PF05198 Translation initiation factor IF-3, N-terminal domain wYak_06850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain wYak_06850 PF03129 Anticodon binding domain wYak_06850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) wYak_06870 PF12838 4Fe-4S dicluster domain wYak_06880 PF01926 50S ribosome-binding GTPase wYak_06880 PF12631 MnmE helical domain wYak_06880 PF10396 GTP-binding protein TrmE N-terminus wYak_06890 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_06900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal wYak_06900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III wYak_06910 PF02504 Fatty acid synthesis protein wYak_06920 PF01783 Ribosomal L32p protein family wYak_06930 PF02405 Permease MlaE wYak_06940 PF00005 ABC transporter wYak_06960 PF13288 DXP reductoisomerase C-terminal domain wYak_06960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase wYak_06960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain wYak_06990 PF00266 Aminotransferase class-V wYak_07000 PF01523 Putative modulator of DNA gyrase wYak_07050 PF01367 5'-3' exonuclease, C-terminal SAM fold wYak_07050 PF00476 DNA polymerase family A wYak_07050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain wYak_07100 PF00557 Metallopeptidase family M24 wYak_07100 PF01321 Creatinase/Prolidase N-terminal domain wYak_07110 PF01134 Glucose inhibited division protein A wYak_07110 PF13932 GidA associated domain wYak_07120 PF03023 Lipid II flippase MurJ wYak_07140 PF04860 Phage portal protein wYak_07160 PF03099 Biotin/lipoate A/B protein ligase family wYak_07170 PF02016 LD-carboxypeptidase N-terminal domain wYak_07170 PF17676 LD-carboxypeptidase C-terminal domain wYak_07200 PF00528 Binding-protein-dependent transport system inner membrane component wYak_07210 PF01245 Ribosomal protein L19 wYak_07220 PF01746 tRNA (Guanine-1)-methyltransferase wYak_07230 PF01259 SAICAR synthetase wYak_07240 PF00586 AIR synthase related protein, N-terminal domain wYak_07240 PF02769 AIR synthase related protein, C-terminal domain wYak_07270 PF03471 Transporter associated domain wYak_07270 PF00571 CBS domain wYak_07280 PF01208 Uroporphyrinogen decarboxylase (URO-D) wYak_07290 PF00155 Aminotransferase class I and II wYak_07340 PF00464 Serine hydroxymethyltransferase wYak_07390 PF01545 Cation efflux family wYak_07410 PF02660 Glycerol-3-phosphate acyltransferase wYak_07420 PF01235 Sodium:alanine symporter family wYak_07430 PF01235 Sodium:alanine symporter family wYak_07440 PF01066 CDP-alcohol phosphatidyltransferase wYak_07450 PF02666 Phosphatidylserine decarboxylase wYak_07460 PF00154 recA bacterial DNA recombination protein wYak_07470 PF00684 DnaJ central domain wYak_07470 PF01556 DnaJ C terminal domain wYak_07470 PF00226 DnaJ domain wYak_07480 PF08245 Mur ligase middle domain wYak_07480 PF02875 Mur ligase family, glutamate ligase domain wYak_07500 PF03364 Polyketide cyclase / dehydrase and lipid transport wYak_07510 PF13462 Thioredoxin wYak_07560 PF12169 DNA polymerase III subunits gamma and tau domain III wYak_07570 PF02575 YbaB/EbfC DNA-binding family wYak_07580 PF13505 Outer membrane protein beta-barrel domain wYak_07590 PF00140 Sigma-70 factor, region 1.2 wYak_07590 PF04542 Sigma-70 region 2 wYak_07590 PF04545 Sigma-70, region 4 wYak_07610 PF02768 DNA polymerase III beta subunit, C-terminal domain wYak_07610 PF00712 DNA polymerase III beta subunit, N-terminal domain wYak_07610 PF02767 DNA polymerase III beta subunit, central domain wYak_07620 PF01416 tRNA pseudouridine synthase wYak_07630 PF00032 Cytochrome b(C-terminal)/b6/petD wYak_07630 PF00033 Cytochrome b/b6/petB wYak_07630 PF02167 Cytochrome C1 family wYak_07640 PF00033 Cytochrome b/b6/petB wYak_07640 PF00032 Cytochrome b(C-terminal)/b6/petD wYak_07650 PF00684 DnaJ central domain wYak_07650 PF01556 DnaJ C terminal domain wYak_07650 PF00226 DnaJ domain wYak_07670 PF00684 DnaJ central domain wYak_07670 PF01556 DnaJ C terminal domain wYak_07670 PF00226 DnaJ domain wYak_07690 PF13393 Histidyl-tRNA synthetase wYak_07690 PF03129 Anticodon binding domain wYak_07700 PF01975 Survival protein SurE wYak_07710 PF00448 SRP54-type protein, GTPase domain wYak_07710 PF02881 SRP54-type protein, helical bundle domain wYak_07710 PF02978 Signal peptide binding domain wYak_07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_07740 PF07977 FabA-like domain wYak_07760 PF01103 Surface antigen wYak_07760 PF07244 Surface antigen variable number repeat wYak_07770 PF17820 PDZ domain wYak_07770 PF02163 Peptidase family M50 wYak_07800 PF00216 Bacterial DNA-binding protein wYak_07810 PF00575 S1 RNA binding domain wYak_07820 PF02390 Putative methyltransferase wYak_07840 PF01258 Prokaryotic dksA/traR C4-type zinc finger wYak_07870 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal wYak_07870 PF01926 50S ribosome-binding GTPase wYak_07890 PF03232 Ubiquinone biosynthesis protein COQ7 wYak_07900 PF00953 Glycosyl transferase family 4 wYak_07910 PF01351 Ribonuclease HII wYak_07950 PF00361 Proton-conducting membrane transporter wYak_07960 PF01098 Cell cycle protein wYak_07970 PF13537 Glutamine amidotransferase domain wYak_07970 PF00156 Phosphoribosyl transferase domain wYak_07980 PF02245 Methylpurine-DNA glycosylase (MPG) wYak_08000 PF17864 RuvB AAA lid domain wYak_08000 PF05491 RuvB C-terminal winged helix domain wYak_08000 PF05496 Holliday junction DNA helicase RuvB P-loop domain wYak_08010 PF01330 RuvA N terminal domain wYak_08010 PF07499 RuvA, C-terminal domain wYak_08030 PF00579 tRNA synthetases class I (W and Y) wYak_08060 PF00293 NUDIX domain wYak_08070 PF01026 TatD related DNase wYak_08080 PF00056 lactate/malate dehydrogenase, NAD binding domain wYak_08080 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain wYak_08090 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit wYak_08100 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit wYak_08110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 wYak_08120 PF01230 HIT domain wYak_08150 PF08245 Mur ligase middle domain wYak_08150 PF02875 Mur ligase family, glutamate ligase domain wYak_08150 PF01225 Mur ligase family, catalytic domain wYak_08160 PF01370 NAD dependent epimerase/dehydratase family wYak_08160 PF08338 Domain of unknown function (DUF1731) wYak_08180 PF01131 DNA topoisomerase wYak_08180 PF01751 Toprim domain wYak_08180 PF01396 Topoisomerase DNA binding C4 zinc finger wYak_08180 PF13368 Topoisomerase C-terminal repeat wYak_08190 PF00581 Rhodanese-like domain wYak_08190 PF17773 UPF0176 acylphosphatase like domain wYak_08200 PF00528 Binding-protein-dependent transport system inner membrane component wYak_08230 PF04379 ApaG domain wYak_08240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain wYak_08240 PF02222 ATP-grasp domain wYak_08250 PF02542 YgbB family wYak_08250 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase wYak_08260 PF01594 AI-2E family transporter wYak_08290 PF00589 Phage integrase family wYak_08290 PF02899 Phage integrase, N-terminal SAM-like domain wYak_08310 PF01649 Ribosomal protein S20 wYak_08320 PF00285 Citrate synthase, C-terminal domain wYak_08350 PF01039 Carboxyl transferase domain wYak_08360 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain wYak_08360 PF06827 Zinc finger found in FPG and IleRS wYak_08360 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain wYak_08370 PF01243 Pyridoxamine 5'-phosphate oxidase wYak_08370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region wYak_08380 PF03772 Competence protein wYak_08380 PF00753 Metallo-beta-lactamase superfamily wYak_08400 PF00849 RNA pseudouridylate synthase wYak_08410 PF01219 Prokaryotic diacylglycerol kinase wYak_08430 PF00162 Phosphoglycerate kinase wYak_08450 PF03060 Nitronate monooxygenase wYak_08480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system wYak_08500 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_08500 PF01348 Type II intron maturase wYak_08520 PF03989 DNA gyrase C-terminal domain, beta-propeller wYak_08520 PF00521 DNA gyrase/topoisomerase IV, subunit A wYak_08530 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal wYak_08530 PF00355 Rieske [2Fe-2S] domain wYak_08540 PF00270 DEAD/DEAH box helicase wYak_08540 PF00271 Helicase conserved C-terminal domain wYak_08540 PF18074 Primosomal protein N C-terminal domain wYak_08540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain wYak_08540 PF17764 3′ DNA-binding domain (3′BD) wYak_08560 PF02511 Thymidylate synthase complementing protein wYak_08570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) wYak_08590 PF02801 Beta-ketoacyl synthase, C-terminal domain wYak_08590 PF00109 Beta-ketoacyl synthase, N-terminal domain wYak_08600 PF00550 Phosphopantetheine attachment site wYak_08610 PF00348 Polyprenyl synthetase wYak_08630 PF10431 C-terminal, D2-small domain, of ClpB protein wYak_08630 PF07724 AAA domain (Cdc48 subfamily) wYak_08630 PF00004 ATPase family associated with various cellular activities (AAA) wYak_08640 PF00227 Proteasome subunit wYak_08670 PF00762 Ferrochelatase wYak_08690 PF00334 Nucleoside diphosphate kinase wYak_08700 PF13662 Toprim domain wYak_08700 PF02132 RecR protein wYak_08730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) wYak_08730 PF00364 Biotin-requiring enzyme wYak_08730 PF02817 e3 binding domain wYak_08760 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_08760 PF01348 Type II intron maturase wYak_08780 PF02632 BioY family wYak_08790 PF00881 Nitroreductase family wYak_08800 PF01678 Diaminopimelate epimerase wYak_08810 PF02629 CoA binding domain wYak_08810 PF00549 CoA-ligase wYak_08820 PF00549 CoA-ligase wYak_08820 PF08442 ATP-grasp domain wYak_08840 PF04452 RNA methyltransferase wYak_08850 PF01609 Transposase DDE domain wYak_08870 PF01218 Coproporphyrinogen III oxidase wYak_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wYak_08880 PF00512 His Kinase A (phospho-acceptor) domain wYak_08880 PF08448 PAS fold wYak_08880 PF13188 PAS domain wYak_08880 PF00072 Response regulator receiver domain wYak_08890 PF13614 AAA domain wYak_08900 PF02195 ParB-like nuclease domain wYak_08900 PF17762 HTH domain found in ParB protein wYak_08920 PF02810 SEC-C motif wYak_08920 PF07517 SecA DEAD-like domain wYak_08920 PF01043 SecA preprotein cross-linking domain wYak_08920 PF07516 SecA Wing and Scaffold domain wYak_09170 PF17761 DUF1016 N-terminal domain wYak_09170 PF06250 YhcG PDDEXK nuclease domain wYak_09220 PF18755 Restriction Enzyme Adenine Methylase Associated wYak_09220 PF01555 DNA methylase wYak_09390 PF17482 Phage tail sheath C-terminal domain wYak_09390 PF04984 Phage tail sheath protein subtilisin-like domain wYak_09520 PF13091 PLD-like domain wYak_09530 PF01734 Patatin-like phospholipase wYak_09550 PF08671 Anti-repressor SinI wYak_09550 PF01381 Helix-turn-helix wYak_09570 PF04002 RadC-like JAB domain wYak_09630 PF01348 Type II intron maturase wYak_09630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_09730 PF00023 Ankyrin repeat wYak_09750 PF01555 DNA methylase wYak_09750 PF18755 Restriction Enzyme Adenine Methylase Associated wYak_10020 PF01734 Patatin-like phospholipase wYak_10040 PF01609 Transposase DDE domain wYak_10060 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit wYak_10070 PF00202 Aminotransferase class-III wYak_10080 PF03471 Transporter associated domain wYak_10080 PF00571 CBS domain wYak_10080 PF01595 Cyclin M transmembrane N-terminal domain wYak_10090 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) wYak_10100 PF02441 Flavoprotein wYak_10110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain wYak_10110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain wYak_10140 PF00923 Transaldolase/Fructose-6-phosphate aldolase wYak_10160 PF07516 SecA Wing and Scaffold domain wYak_10160 PF01043 SecA preprotein cross-linking domain wYak_10160 PF07517 SecA DEAD-like domain wYak_10160 PF02810 SEC-C motif wYak_10180 PF00364 Biotin-requiring enzyme wYak_10180 PF02817 e3 binding domain wYak_10180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) wYak_10190 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain wYak_10190 PF03900 Porphobilinogen deaminase, C-terminal domain wYak_10200 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain wYak_10200 PF01565 FAD binding domain wYak_10230 PF03796 DnaB-like helicase C terminal domain wYak_10230 PF00772 DnaB-like helicase N terminal domain wYak_10370 PF01380 SIS domain wYak_10380 PF02699 Preprotein translocase subunit wYak_10390 PF00318 Ribosomal protein S2 wYak_10400 PF00889 Elongation factor TS wYak_10410 PF00696 Amino acid kinase family wYak_10420 PF01765 Ribosome recycling factor wYak_10440 PF01255 Putative undecaprenyl diphosphate synthase wYak_10470 PF01467 Cytidylyltransferase-like wYak_10510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) wYak_10510 PF01348 Type II intron maturase wYak_10560 PF12804 MobA-like NTP transferase domain wYak_10560 PF00132 Bacterial transferase hexapeptide (six repeats) wYak_10560 PF14602 Hexapeptide repeat of succinyl-transferase wYak_10570 PF16363 GDP-mannose 4,6 dehydratase wYak_10610 PF00005 ABC transporter wYak_10610 PF00664 ABC transporter transmembrane region wYak_10620 PF01212 Beta-eliminating lyase wYak_10630 PF01212 Beta-eliminating lyase wYak_10650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain wYak_10650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain wYak_10650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain wYak_10660 PF00892 EamA-like transporter family wYak_10700 PF04002 RadC-like JAB domain wYak_10710 PF01381 Helix-turn-helix wYak_10980 PF17761 DUF1016 N-terminal domain wYak_10980 PF06250 YhcG PDDEXK nuclease domain wYak_11030 PF01555 DNA methylase wYak_11030 PF18755 Restriction Enzyme Adenine Methylase Associated wYak_11320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit wYak_11330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit wYak_11390 PF12704 MacB-like periplasmic core domain wYak_11390 PF02687 FtsX-like permease family wYak_11420 PF00231 ATP synthase wYak_11430 PF01523 Putative modulator of DNA gyrase wYak_11440 PF00313 'Cold-shock' DNA-binding domain wYak_11450 PF00270 DEAD/DEAH box helicase wYak_11450 PF00271 Helicase conserved C-terminal domain wYak_11460 PF10431 C-terminal, D2-small domain, of ClpB protein wYak_11460 PF07724 AAA domain (Cdc48 subfamily) wYak_11460 PF00004 ATPase family associated with various cellular activities (AAA) wYak_11460 PF02861 Clp amino terminal domain, pathogenicity island component wYak_11460 PF17871 AAA lid domain wYak_11470 PF01791 DeoC/LacD family aldolase wYak_11480 PF01180 Dihydroorotate dehydrogenase wYak_11490 PF00035 Double-stranded RNA binding motif wYak_11490 PF14622 Ribonuclease-III-like wYak_11510 PF13091 PLD-like domain wYak_11550 PF00210 Ferritin-like domain wYak_11570 PF00999 Sodium/hydrogen exchanger family wYak_11570 PF02254 TrkA-N domain wYak_11590 PF02223 Thymidylate kinase wYak_11610 PF17862 AAA+ lid domain wYak_11610 PF01434 Peptidase family M41 wYak_11610 PF06480 FtsH Extracellular wYak_11610 PF00004 ATPase family associated with various cellular activities (AAA) wYak_11620 PF01171 PP-loop family wYak_11630 PF00691 OmpA family wYak_11680 PF00719 Inorganic pyrophosphatase wYak_11690 PF00639 PPIC-type PPIASE domain wYak_11690 PF09312 SurA N-terminal domain wYak_11700 PF07992 Pyridine nucleotide-disulphide oxidoreductase wYak_11750 PF03717 Penicillin-binding Protein dimerisation domain wYak_11750 PF00905 Penicillin binding protein transpeptidase domain wYak_11760 PF02401 LytB protein wYak_11770 PF00183 Hsp90 protein wYak_11790 PF00155 Aminotransferase class I and II wYak_11810 PF08207 Elongation factor P (EF-P) KOW-like domain wYak_11810 PF09285 Elongation factor P, C-terminal wYak_11810 PF01132 Elongation factor P (EF-P) OB domain wYak_11820 PF05239 PRC-barrel domain wYak_11820 PF01782 RimM N-terminal domain wYak_11830 PF00202 Aminotransferase class-III wYak_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase wYak_11840 PF00512 His Kinase A (phospho-acceptor) domain wYak_11840 PF00989 PAS fold wYak_11850 PF00578 AhpC/TSA family wYak_11860 PF02463 RecF/RecN/SMC N terminal domain wYak_11900 PF03631 Virulence factor BrkB wYak_11920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain wYak_11920 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain wYak_11920 PF02142 MGS-like domain wYak_11950 PF04539 Sigma-70 region 3 wYak_11950 PF04542 Sigma-70 region 2 wYak_11950 PF00140 Sigma-70 factor, region 1.2 wYak_11950 PF03979 Sigma-70 factor, region 1.1 wYak_11950 PF04546 Sigma-70, non-essential region wYak_11950 PF04545 Sigma-70, region 4 wYak_11960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L wYak_11980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus wYak_11980 PF00361 Proton-conducting membrane transporter wYak_11980 PF13244 Domain of unknown function (DUF4040) wYak_11990 PF03334 Na+/H+ antiporter subunit wYak_12010 PF01192 RNA polymerase Rpb6 wYak_12030 PF00731 AIR carboxylase wYak_12040 PF01119 DNA mismatch repair protein, C-terminal domain wYak_12040 PF08676 MutL C terminal dimerisation domain wYak_12050 PF16078 2-oxoglutarate dehydrogenase N-terminus wYak_12050 PF02779 Transketolase, pyrimidine binding domain wYak_12050 PF16870 2-oxoglutarate dehydrogenase C-terminal wYak_12050 PF00676 Dehydrogenase E1 component wYak_12090 PF02661 Fic/DOC family wYak_12090 PF13784 Fic/DOC family N-terminal wYak_12100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase wYak_12110 PF01040 UbiA prenyltransferase family wYak_12120 PF02033 Ribosome-binding factor A wYak_12130 PF00009 Elongation factor Tu GTP binding domain wYak_12130 PF11987 Translation-initiation factor 2 wYak_12130 PF04760 Translation initiation factor IF-2, N-terminal region wYak_12140 PF13184 NusA-like KH domain wYak_12140 PF08529 NusA N-terminal domain wYak_12140 PF00575 S1 RNA binding domain wYak_12150 PF00873 AcrB/AcrD/AcrF family wYak_12170 PF00120 Glutamine synthetase, catalytic domain