locus-tag class description ASM33_00010 PF00589 Phage integrase family ASM33_00010 PF02899 Phage integrase, N-terminal SAM-like domain ASM33_00035 PF00075 RNase H ASM33_00050 PF00665 Integrase core domain ASM33_00055 PF02630 SCO1/SenC ASM33_00065 PF00692 dUTPase ASM33_00095 PF05088 Bacterial NAD-glutamate dehydrogenase ASM33_00105 PF00072 Response regulator receiver domain ASM33_00105 PF00990 Diguanylate cyclase, GGDEF domain ASM33_00125 PF00709 Adenylosuccinate synthetase ASM33_00145 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ASM33_00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ASM33_00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ASM33_00170 PF05193 Peptidase M16 inactive domain ASM33_00170 PF00675 Insulinase (Peptidase family M16) ASM33_00190 PF04379 ApaG domain ASM33_00220 PF00361 Proton-conducting membrane transporter ASM33_00245 PF00330 Aconitase family (aconitate hydratase) ASM33_00245 PF00694 Aconitase C-terminal domain ASM33_00250 PF02556 Preprotein translocase subunit SecB ASM33_00260 PF00929 Exonuclease ASM33_00275 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ASM33_00290 PF00227 Proteasome subunit ASM33_00295 PF10431 C-terminal, D2-small domain, of ClpB protein ASM33_00295 PF07724 AAA domain (Cdc48 subfamily) ASM33_00295 PF00004 ATPase family associated with various cellular activities (AAA) ASM33_00300 PF17871 AAA lid domain ASM33_00300 PF00004 ATPase family associated with various cellular activities (AAA) ASM33_00300 PF07724 AAA domain (Cdc48 subfamily) ASM33_00300 PF02861 Clp amino terminal domain, pathogenicity island component ASM33_00300 PF10431 C-terminal, D2-small domain, of ClpB protein ASM33_00315 PF00206 Lyase ASM33_00315 PF10415 Fumarase C C-terminus ASM33_00335 PF07508 Recombinase ASM33_00335 PF00239 Resolvase, N terminal domain ASM33_00335 PF13408 Recombinase zinc beta ribbon domain ASM33_00370 PF00239 Resolvase, N terminal domain ASM33_00370 PF02796 Helix-turn-helix domain of resolvase ASM33_00405 PF02632 BioY family ASM33_00410 PF00881 Nitroreductase family ASM33_00430 PF01678 Diaminopimelate epimerase ASM33_00435 PF00730 HhH-GPD superfamily base excision DNA repair protein ASM33_00435 PF00633 Helix-hairpin-helix motif ASM33_00435 PF10576 Iron-sulfur binding domain of endonuclease III ASM33_00445 PF13520 Amino acid permease ASM33_00465 PF18073 Rubredoxin metal binding domain ASM33_00520 PF17482 Phage tail sheath C-terminal domain ASM33_00520 PF04984 Phage tail sheath protein subtilisin-like domain ASM33_00585 PF13091 PLD-like domain ASM33_00595 PF01555 DNA methylase ASM33_00615 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ASM33_00615 PF00533 BRCA1 C Terminus (BRCT) domain ASM33_00615 PF01653 NAD-dependent DNA ligase adenylation domain ASM33_00615 PF03120 NAD-dependent DNA ligase OB-fold domain ASM33_00615 PF12826 Helix-hairpin-helix motif ASM33_00640 PF13408 Recombinase zinc beta ribbon domain ASM33_00640 PF07508 Recombinase ASM33_00640 PF00239 Resolvase, N terminal domain ASM33_00655 PF04002 RadC-like JAB domain ASM33_00660 PF01381 Helix-turn-helix ASM33_00675 PF00239 Resolvase, N terminal domain ASM33_00675 PF13408 Recombinase zinc beta ribbon domain ASM33_00675 PF07508 Recombinase ASM33_00710 PF00892 EamA-like transporter family ASM33_00715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ASM33_00715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ASM33_00715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ASM33_00725 PF01212 Beta-eliminating lyase ASM33_00730 PF01212 Beta-eliminating lyase ASM33_00735 PF00664 ABC transporter transmembrane region ASM33_00735 PF00005 ABC transporter ASM33_00750 PF04055 Radical SAM superfamily ASM33_00750 PF06463 Molybdenum Cofactor Synthesis C ASM33_00765 PF00665 Integrase core domain ASM33_00790 PF00132 Bacterial transferase hexapeptide (six repeats) ASM33_00790 PF14602 Hexapeptide repeat of succinyl-transferase ASM33_00790 PF12804 MobA-like NTP transferase domain ASM33_00820 PF12419 SNF2 Helicase protein ASM33_00820 PF00271 Helicase conserved C-terminal domain ASM33_00820 PF00176 SNF2 family N-terminal domain ASM33_00855 PF04002 RadC-like JAB domain ASM33_00865 PF01381 Helix-turn-helix ASM33_00870 PF01381 Helix-turn-helix ASM33_00890 PF01381 Helix-turn-helix ASM33_00900 PF01016 Ribosomal L27 protein ASM33_00905 PF00829 Ribosomal prokaryotic L21 protein ASM33_00915 PF01609 Transposase DDE domain ASM33_00930 PF02934 GatB/GatE catalytic domain ASM33_00930 PF02637 GatB domain ASM33_00945 PF00625 Guanylate kinase ASM33_00950 PF01258 Prokaryotic dksA/traR C4-type zinc finger ASM33_00960 PF05239 PRC-barrel domain ASM33_00960 PF01782 RimM N-terminal domain ASM33_00965 PF02130 Uncharacterized protein family UPF0054 ASM33_00980 PF01209 ubiE/COQ5 methyltransferase family ASM33_00985 PF03477 ATP cone domain ASM33_00985 PF02867 Ribonucleotide reductase, barrel domain ASM33_00985 PF00317 Ribonucleotide reductase, all-alpha domain ASM33_00995 PF01617 Surface antigen ASM33_01005 PF03652 Holliday junction resolvase ASM33_01010 PF03989 DNA gyrase C-terminal domain, beta-propeller ASM33_01010 PF00521 DNA gyrase/topoisomerase IV, subunit A ASM33_01015 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ASM33_01015 PF00355 Rieske [2Fe-2S] domain ASM33_01020 PF00005 ABC transporter ASM33_01025 PF02405 Permease MlaE ASM33_01030 PF02686 Glu-tRNAGln amidotransferase C subunit ASM33_01035 PF14572 Phosphoribosyl synthetase-associated domain ASM33_01035 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ASM33_01040 PF10609 NUBPL iron-transfer P-loop NTPase ASM33_01050 PF00571 CBS domain ASM33_01050 PF01769 Divalent cation transporter ASM33_01050 PF03448 MgtE intracellular N domain ASM33_01065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASM33_01065 PF07497 Rho termination factor, RNA-binding domain ASM33_01065 PF07498 Rho termination factor, N-terminal domain ASM33_01070 PF01235 Sodium:alanine symporter family ASM33_01075 PF01235 Sodium:alanine symporter family ASM33_01085 PF02660 Glycerol-3-phosphate acyltransferase ASM33_01095 PF01545 Cation efflux family ASM33_01105 PF04002 RadC-like JAB domain ASM33_01115 PF01609 Transposase DDE domain ASM33_01130 PF00665 Integrase core domain ASM33_01140 PF01513 ATP-NAD kinase ASM33_01145 PF01197 Ribosomal protein L31 ASM33_01150 PF00698 Acyl transferase domain ASM33_01155 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ASM33_01155 PF01676 Metalloenzyme superfamily ASM33_01200 PF02646 RmuC family ASM33_01230 PF13685 Iron-containing alcohol dehydrogenase ASM33_01235 PF00665 Integrase core domain ASM33_01240 PF01522 Polysaccharide deacetylase ASM33_01245 PF03717 Penicillin-binding Protein dimerisation domain ASM33_01245 PF00905 Penicillin binding protein transpeptidase domain ASM33_01255 PF00665 Integrase core domain ASM33_01260 PF03109 ABC1 family ASM33_01265 PF00005 ABC transporter ASM33_01270 PF01297 Zinc-uptake complex component A periplasmic ASM33_01285 PF01578 Cytochrome C assembly protein ASM33_01290 PF02534 Type IV secretory system Conjugative DNA transfer ASM33_01295 PF00437 Type II/IV secretion system protein ASM33_01310 PF04335 VirB8 protein ASM33_01315 PF00925 GTP cyclohydrolase II ASM33_01350 PF00665 Integrase core domain ASM33_01365 PF01812 5-formyltetrahydrofolate cyclo-ligase family ASM33_01370 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_01375 PF01820 D-ala D-ala ligase N-terminus ASM33_01375 PF07478 D-ala D-ala ligase C-terminus ASM33_01380 PF03799 Cell division protein FtsQ ASM33_01380 PF08478 POTRA domain, FtsQ-type ASM33_01385 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ASM33_01395 PF00380 Ribosomal protein S9/S16 ASM33_01400 PF00572 Ribosomal protein L13 ASM33_01410 PF10691 Protein of unknown function (DUF2497) ASM33_01415 PF01728 FtsJ-like methyltransferase ASM33_01450 PF07650 KH domain ASM33_01450 PF01926 50S ribosome-binding GTPase ASM33_01470 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_01470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ASM33_01480 PF04101 Glycosyltransferase family 28 C-terminal domain ASM33_01480 PF03033 Glycosyltransferase family 28 N-terminal domain ASM33_01485 PF01609 Transposase DDE domain ASM33_01495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ASM33_01495 PF00925 GTP cyclohydrolase II ASM33_01500 PF01272 Transcription elongation factor, GreA/GreB, C-term ASM33_01500 PF03449 Transcription elongation factor, N-terminal ASM33_01505 PF02874 ATP synthase alpha/beta family, beta-barrel domain ASM33_01505 PF00306 ATP synthase alpha/beta chain, C terminal domain ASM33_01505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASM33_01510 PF00213 ATP synthase delta (OSCP) subunit ASM33_01515 PF02021 Uncharacterised protein family UPF0102 ASM33_01520 PF01196 Ribosomal protein L17 ASM33_01525 PF01000 RNA polymerase Rpb3/RpoA insert domain ASM33_01525 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ASM33_01525 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ASM33_01530 PF00411 Ribosomal protein S11 ASM33_01535 PF00416 Ribosomal protein S13/S18 ASM33_01545 PF00344 SecY translocase ASM33_01550 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ASM33_01555 PF03719 Ribosomal protein S5, C-terminal domain ASM33_01555 PF00333 Ribosomal protein S5, N-terminal domain ASM33_01560 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ASM33_01565 PF00347 Ribosomal protein L6 ASM33_01570 PF00410 Ribosomal protein S8 ASM33_01575 PF00253 Ribosomal protein S14p/S29e ASM33_01580 PF00281 Ribosomal protein L5 ASM33_01580 PF00673 ribosomal L5P family C-terminus ASM33_01585 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ASM33_01590 PF00238 Ribosomal protein L14p/L23e ASM33_01595 PF00366 Ribosomal protein S17 ASM33_01600 PF00831 Ribosomal L29 protein ASM33_01605 PF00252 Ribosomal protein L16p/L10e ASM33_01610 PF00189 Ribosomal protein S3, C-terminal domain ASM33_01610 PF07650 KH domain ASM33_01615 PF00237 Ribosomal protein L22p/L17e ASM33_01620 PF00203 Ribosomal protein S19 ASM33_01625 PF03947 Ribosomal Proteins L2, C-terminal domain ASM33_01625 PF00181 Ribosomal Proteins L2, RNA binding domain ASM33_01630 PF00276 Ribosomal protein L23 ASM33_01635 PF00573 Ribosomal protein L4/L1 family ASM33_01640 PF00297 Ribosomal protein L3 ASM33_01645 PF00338 Ribosomal protein S10p/S20e ASM33_01650 PF03144 Elongation factor Tu domain 2 ASM33_01650 PF03143 Elongation factor Tu C-terminal domain ASM33_01650 PF00009 Elongation factor Tu GTP binding domain ASM33_01665 PF00117 Glutamine amidotransferase class-I ASM33_01665 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ASM33_01680 PF00923 Transaldolase/Fructose-6-phosphate aldolase ASM33_01685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ASM33_01690 PF02874 ATP synthase alpha/beta family, beta-barrel domain ASM33_01690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ASM33_01695 PF00528 Binding-protein-dependent transport system inner membrane component ASM33_01700 PF00825 Ribonuclease P ASM33_01715 PF00118 TCP-1/cpn60 chaperonin family ASM33_01720 PF00166 Chaperonin 10 Kd subunit ASM33_01725 PF01571 Aminomethyltransferase folate-binding domain ASM33_01730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ASM33_01730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ASM33_01730 PF13288 DXP reductoisomerase C-terminal domain ASM33_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASM33_01750 PF00512 His Kinase A (phospho-acceptor) domain ASM33_01750 PF08448 PAS fold ASM33_01750 PF00072 Response regulator receiver domain ASM33_01750 PF13188 PAS domain ASM33_01775 PF01218 Coproporphyrinogen III oxidase ASM33_01780 PF00085 Thioredoxin ASM33_01800 PF03741 Integral membrane protein TerC family ASM33_01805 PF02390 Putative methyltransferase ASM33_01810 PF00575 S1 RNA binding domain ASM33_01815 PF00216 Bacterial DNA-binding protein ASM33_01835 PF17820 PDZ domain ASM33_01835 PF02163 Peptidase family M50 ASM33_01840 PF07244 Surface antigen variable number repeat ASM33_01840 PF01103 Surface antigen ASM33_01850 PF07977 FabA-like domain ASM33_01860 PF00155 Aminotransferase class I and II ASM33_01875 PF00183 Hsp90 protein ASM33_01880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ASM33_01880 PF02542 YgbB family ASM33_01885 PF00448 SRP54-type protein, GTPase domain ASM33_01885 PF02881 SRP54-type protein, helical bundle domain ASM33_01895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ASM33_01895 PF00289 Biotin carboxylase, N-terminal domain ASM33_01895 PF02785 Biotin carboxylase C-terminal domain ASM33_01940 PF01609 Transposase DDE domain ASM33_01975 PF00578 AhpC/TSA family ASM33_01980 PF17862 AAA+ lid domain ASM33_01980 PF06480 FtsH Extracellular ASM33_01980 PF01434 Peptidase family M41 ASM33_01980 PF00004 ATPase family associated with various cellular activities (AAA) ASM33_01985 PF01368 DHH family ASM33_01985 PF02272 DHHA1 domain ASM33_01985 PF17768 RecJ OB domain ASM33_02000 PF01609 Transposase DDE domain ASM33_02015 PF01040 UbiA prenyltransferase family ASM33_02020 PF00115 Cytochrome C and Quinol oxidase polypeptide I ASM33_02025 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ASM33_02025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ASM33_02045 PF00226 DnaJ domain ASM33_02045 PF00684 DnaJ central domain ASM33_02045 PF01556 DnaJ C terminal domain ASM33_02050 PF01609 Transposase DDE domain ASM33_02055 PF04997 RNA polymerase Rpb1, domain 1 ASM33_02055 PF04563 RNA polymerase beta subunit ASM33_02055 PF00623 RNA polymerase Rpb1, domain 2 ASM33_02055 PF04983 RNA polymerase Rpb1, domain 3 ASM33_02055 PF05000 RNA polymerase Rpb1, domain 4 ASM33_02055 PF04560 RNA polymerase Rpb2, domain 7 ASM33_02055 PF04998 RNA polymerase Rpb1, domain 5 ASM33_02055 PF00562 RNA polymerase Rpb2, domain 6 ASM33_02055 PF04561 RNA polymerase Rpb2, domain 2 ASM33_02055 PF04565 RNA polymerase Rpb2, domain 3 ASM33_02055 PF10385 RNA polymerase beta subunit external 1 domain ASM33_02065 PF00466 Ribosomal protein L10 ASM33_02070 PF00687 Ribosomal protein L1p/L10e family ASM33_02075 PF03946 Ribosomal protein L11, N-terminal domain ASM33_02075 PF00298 Ribosomal protein L11, RNA binding domain ASM33_02080 PF00467 KOW motif ASM33_02080 PF02357 Transcription termination factor nusG ASM33_02090 PF03144 Elongation factor Tu domain 2 ASM33_02090 PF03143 Elongation factor Tu C-terminal domain ASM33_02090 PF00009 Elongation factor Tu GTP binding domain ASM33_02095 PF00679 Elongation factor G C-terminus ASM33_02095 PF03144 Elongation factor Tu domain 2 ASM33_02095 PF14492 Elongation Factor G, domain II ASM33_02095 PF00009 Elongation factor Tu GTP binding domain ASM33_02095 PF03764 Elongation factor G, domain IV ASM33_02100 PF00177 Ribosomal protein S7p/S5e ASM33_02105 PF00164 Ribosomal protein S12/S23 ASM33_02115 PF01235 Sodium:alanine symporter family ASM33_02130 PF02511 Thymidylate synthase complementing protein ASM33_02135 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ASM33_02140 PF01494 FAD binding domain ASM33_02145 PF01292 Prokaryotic cytochrome b561 ASM33_02150 PF03060 Nitronate monooxygenase ASM33_02165 PF00471 Ribosomal protein L33 ASM33_02170 PF12111 Polyribonucleotide phosphorylase C terminal ASM33_02170 PF00575 S1 RNA binding domain ASM33_02170 PF10150 Ribonuclease E/G family ASM33_02180 PF03120 NAD-dependent DNA ligase OB-fold domain ASM33_02180 PF12826 Helix-hairpin-helix motif ASM33_02180 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ASM33_02180 PF00533 BRCA1 C Terminus (BRCT) domain ASM33_02180 PF01653 NAD-dependent DNA ligase adenylation domain ASM33_02185 PF12796 Ankyrin repeats (3 copies) ASM33_02190 PF17191 RecG wedge domain ASM33_02190 PF00271 Helicase conserved C-terminal domain ASM33_02190 PF00270 DEAD/DEAH box helicase ASM33_02195 PF02545 Maf-like protein ASM33_02200 PF01176 Translation initiation factor 1A / IF-1 ASM33_02215 PF03099 Biotin/lipoate A/B protein ligase family ASM33_02230 PF00436 Single-strand binding protein family ASM33_02250 PF02769 AIR synthase related protein, C-terminal domain ASM33_02250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ASM33_02250 PF00586 AIR synthase related protein, N-terminal domain ASM33_02270 PF02978 Signal peptide binding domain ASM33_02270 PF00448 SRP54-type protein, GTPase domain ASM33_02270 PF02881 SRP54-type protein, helical bundle domain ASM33_02275 PF01121 Dephospho-CoA kinase ASM33_02280 PF01171 PP-loop family ASM33_02285 PF00691 OmpA family ASM33_02305 PF00005 ABC transporter ASM33_02310 PF01521 Iron-sulphur cluster biosynthesis ASM33_02315 PF01966 HD domain ASM33_02315 PF13286 Phosphohydrolase-associated domain ASM33_02320 PF01872 RibD C-terminal domain ASM33_02320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ASM33_02325 PF01609 Transposase DDE domain ASM33_02335 PF01131 DNA topoisomerase ASM33_02335 PF13368 Topoisomerase C-terminal repeat ASM33_02335 PF01751 Toprim domain ASM33_02335 PF01396 Topoisomerase DNA binding C4 zinc finger ASM33_02340 PF08299 Bacterial dnaA protein helix-turn-helix ASM33_02340 PF00308 Bacterial dnaA protein ASM33_02340 PF11638 DnaA N-terminal domain ASM33_02345 PF00120 Glutamine synthetase, catalytic domain ASM33_02350 PF02699 Preprotein translocase subunit ASM33_02355 PF01380 SIS domain ASM33_02360 PF00665 Integrase core domain ASM33_02365 PF00202 Aminotransferase class-III ASM33_02370 PF00989 PAS fold ASM33_02370 PF00512 His Kinase A (phospho-acceptor) domain ASM33_02370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASM33_02390 PF00348 Polyprenyl synthetase ASM33_02395 PF00550 Phosphopantetheine attachment site ASM33_02400 PF00109 Beta-ketoacyl synthase, N-terminal domain ASM33_02400 PF02801 Beta-ketoacyl synthase, C-terminal domain ASM33_02410 PF01523 Putative modulator of DNA gyrase ASM33_02445 PF00665 Integrase core domain ASM33_02465 PF02355 Protein export membrane protein ASM33_02485 PF03900 Porphobilinogen deaminase, C-terminal domain ASM33_02485 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ASM33_02490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ASM33_02490 PF01565 FAD binding domain ASM33_02500 PF13411 MerR HTH family regulatory protein ASM33_02505 PF00216 Bacterial DNA-binding protein ASM33_02520 PF02938 GAD domain ASM33_02520 PF01336 OB-fold nucleic acid binding domain ASM33_02520 PF00152 tRNA synthetases class II (D, K and N) ASM33_02525 PF00665 Integrase core domain ASM33_02555 PF01668 SmpB protein ASM33_02565 PF01790 Prolipoprotein diacylglyceryl transferase ASM33_02575 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ASM33_02575 PF00171 Aldehyde dehydrogenase family ASM33_02575 PF01619 Proline dehydrogenase ASM33_02575 PF14850 DNA-binding domain of Proline dehydrogenase ASM33_02585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ASM33_02585 PF00132 Bacterial transferase hexapeptide (six repeats) ASM33_02585 PF14602 Hexapeptide repeat of succinyl-transferase ASM33_02600 PF00664 ABC transporter transmembrane region ASM33_02600 PF00005 ABC transporter ASM33_02615 PF00375 Sodium:dicarboxylate symporter family ASM33_02620 PF00156 Phosphoribosyl transferase domain ASM33_02625 PF01098 Cell cycle protein ASM33_02630 PF01209 ubiE/COQ5 methyltransferase family ASM33_02635 PF01259 SAICAR synthetase ASM33_02640 PF01746 tRNA (Guanine-1)-methyltransferase ASM33_02645 PF01245 Ribosomal protein L19 ASM33_02655 PF00528 Binding-protein-dependent transport system inner membrane component ASM33_02685 PF17676 LD-carboxypeptidase C-terminal domain ASM33_02685 PF02016 LD-carboxypeptidase N-terminal domain ASM33_02695 PF02091 Glycyl-tRNA synthetase alpha subunit ASM33_02700 PF02092 Glycyl-tRNA synthetase beta subunit ASM33_02700 PF05746 DALR anticodon binding domain ASM33_02705 PF08459 UvrC Helix-hairpin-helix N-terminal ASM33_02705 PF02151 UvrB/uvrC motif ASM33_02705 PF01541 GIY-YIG catalytic domain ASM33_02725 PF00665 Integrase core domain ASM33_02740 PF13098 Thioredoxin-like domain ASM33_02740 PF11412 Disulphide bond corrector protein DsbC ASM33_02740 PF02683 Cytochrome C biogenesis protein transmembrane region ASM33_02750 PF01609 Transposase DDE domain ASM33_02755 PF01425 Amidase ASM33_02765 PF07690 Major Facilitator Superfamily ASM33_02775 PF00528 Binding-protein-dependent transport system inner membrane component ASM33_02790 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_02795 PF00849 RNA pseudouridylate synthase ASM33_02815 PF01208 Uroporphyrinogen decarboxylase (URO-D) ASM33_02820 PF03471 Transporter associated domain ASM33_02820 PF00571 CBS domain ASM33_02825 PF00398 Ribosomal RNA adenine dimethylase ASM33_02835 PF00551 Formyl transferase ASM33_02845 PF02463 RecF/RecN/SMC N terminal domain ASM33_02855 PF08245 Mur ligase middle domain ASM33_02855 PF02875 Mur ligase family, glutamate ligase domain ASM33_02865 PF02245 Methylpurine-DNA glycosylase (MPG) ASM33_02875 PF00462 Glutaredoxin ASM33_02880 PF06574 FAD synthetase ASM33_02880 PF01687 Riboflavin kinase ASM33_02885 PF01252 Signal peptidase (SPase) II ASM33_02890 PF05193 Peptidase M16 inactive domain ASM33_02890 PF00675 Insulinase (Peptidase family M16) ASM33_02900 PF07676 WD40-like Beta Propeller Repeat ASM33_02900 PF04052 TolB amino-terminal domain ASM33_02905 PF17770 Ribonuclease J C-terminal domain ASM33_02905 PF12706 Beta-lactamase superfamily domain ASM33_02905 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ASM33_02915 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ASM33_02920 PF00266 Aminotransferase class-V ASM33_02935 PF00588 SpoU rRNA Methylase family ASM33_02935 PF08032 RNA 2'-O ribose methyltransferase substrate binding ASM33_02940 PF01027 Inhibitor of apoptosis-promoting Bax1 ASM33_02945 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ASM33_02950 PF03471 Transporter associated domain ASM33_02950 PF00571 CBS domain ASM33_02950 PF01595 Cyclin M transmembrane N-terminal domain ASM33_02955 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) ASM33_02960 PF02441 Flavoprotein ASM33_02965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ASM33_02965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ASM33_02995 PF00004 ATPase family associated with various cellular activities (AAA) ASM33_02995 PF05362 Lon protease (S16) C-terminal proteolytic domain ASM33_02995 PF02190 ATP-dependent protease La (LON) substrate-binding domain ASM33_03000 PF07724 AAA domain (Cdc48 subfamily) ASM33_03000 PF06689 ClpX C4-type zinc finger ASM33_03000 PF10431 C-terminal, D2-small domain, of ClpB protein ASM33_03005 PF00574 Clp protease ASM33_03010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ASM33_03010 PF05698 Bacterial trigger factor protein (TF) C-terminus ASM33_03010 PF05697 Bacterial trigger factor protein (TF) ASM33_03020 PF04972 BON domain ASM33_03025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ASM33_03025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ASM33_03040 PF07690 Major Facilitator Superfamily ASM33_03040 PF00083 Sugar (and other) transporter ASM33_03060 PF03023 Lipid II flippase MurJ ASM33_03070 PF01609 Transposase DDE domain ASM33_03085 PF08264 Anticodon-binding domain of tRNA ASM33_03085 PF09334 tRNA synthetases class I (M) ASM33_03090 PF00665 Integrase core domain ASM33_03095 PF05192 MutS domain III ASM33_03095 PF05188 MutS domain II ASM33_03095 PF01624 MutS domain I ASM33_03095 PF00488 MutS domain V ASM33_03095 PF05190 MutS family domain IV ASM33_03110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ASM33_03110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ASM33_03110 PF02142 MGS-like domain ASM33_03115 PF00665 Integrase core domain ASM33_03125 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ASM33_03135 PF00156 Phosphoribosyl transferase domain ASM33_03145 PF01053 Cys/Met metabolism PLP-dependent enzyme ASM33_03150 PF01722 BolA-like protein ASM33_03155 PF00012 Hsp70 protein ASM33_03170 PF01043 SecA preprotein cross-linking domain ASM33_03170 PF07516 SecA Wing and Scaffold domain ASM33_03170 PF02810 SEC-C motif ASM33_03170 PF07517 SecA DEAD-like domain ASM33_03185 PF02540 NAD synthase ASM33_03185 PF00958 GMP synthase C terminal domain ASM33_03185 PF00117 Glutamine amidotransferase class-I ASM33_03215 PF13145 PPIC-type PPIASE domain ASM33_03220 PF00701 Dihydrodipicolinate synthetase family ASM33_03225 PF12796 Ankyrin repeats (3 copies) ASM33_03240 PF00210 Ferritin-like domain ASM33_03275 PF00712 DNA polymerase III beta subunit, N-terminal domain ASM33_03275 PF02767 DNA polymerase III beta subunit, central domain ASM33_03275 PF02768 DNA polymerase III beta subunit, C-terminal domain ASM33_03295 PF01416 tRNA pseudouridine synthase ASM33_03300 PF12838 4Fe-4S dicluster domain ASM33_03310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ASM33_03310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASM33_03310 PF03129 Anticodon binding domain ASM33_03315 PF00707 Translation initiation factor IF-3, C-terminal domain ASM33_03315 PF05198 Translation initiation factor IF-3, N-terminal domain ASM33_03365 PF12169 DNA polymerase III subunits gamma and tau domain III ASM33_03370 PF02575 YbaB/EbfC DNA-binding family ASM33_03375 PF01381 Helix-turn-helix ASM33_03390 PF00692 dUTPase ASM33_03395 PF00665 Integrase core domain ASM33_03400 PF17864 RuvB AAA lid domain ASM33_03400 PF05491 RuvB C-terminal winged helix domain ASM33_03400 PF05496 Holliday junction DNA helicase RuvB P-loop domain ASM33_03405 PF01330 RuvA N terminal domain ASM33_03405 PF07499 RuvA, C-terminal domain ASM33_03420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ASM33_03425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ASM33_03435 PF02272 DHHA1 domain ASM33_03435 PF01411 tRNA synthetases class II (A) ASM33_03435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ASM33_03445 PF02565 Recombination protein O C terminal ASM33_03445 PF11967 Recombination protein O N terminal ASM33_03460 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ASM33_03460 PF01578 Cytochrome C assembly protein ASM33_03470 PF02132 RecR protein ASM33_03470 PF13662 Toprim domain ASM33_03480 PF00719 Inorganic pyrophosphatase ASM33_03495 PF01098 Cell cycle protein ASM33_03515 PF00391 PEP-utilising enzyme, mobile domain ASM33_03515 PF02896 PEP-utilising enzyme, TIM barrel domain ASM33_03515 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ASM33_03525 PF00665 Integrase core domain ASM33_03550 PF00005 ABC transporter ASM33_03560 PF00293 NUDIX domain ASM33_03565 PF01026 TatD related DNase ASM33_03570 PF01609 Transposase DDE domain ASM33_03585 PF01409 tRNA synthetases class II core domain (F) ASM33_03585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ASM33_03590 PF14602 Hexapeptide repeat of succinyl-transferase ASM33_03590 PF00132 Bacterial transferase hexapeptide (six repeats) ASM33_03590 PF12804 MobA-like NTP transferase domain ASM33_03620 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASM33_03625 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASM33_03640 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ASM33_03645 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ASM33_03655 PF01921 tRNA synthetases class I (K) ASM33_03665 PF10502 Signal peptidase, peptidase S26 ASM33_03670 PF00893 Small Multidrug Resistance protein ASM33_03675 PF00893 Small Multidrug Resistance protein ASM33_03680 PF01556 DnaJ C terminal domain ASM33_03680 PF00684 DnaJ central domain ASM33_03680 PF00226 DnaJ domain ASM33_03690 PF00570 HRDC domain ASM33_03690 PF01612 3'-5' exonuclease ASM33_03695 PF00490 Delta-aminolevulinic acid dehydratase ASM33_03705 PF00146 NADH dehydrogenase ASM33_03715 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ASM33_03715 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ASM33_03715 PF00384 Molybdopterin oxidoreductase ASM33_03745 PF02254 TrkA-N domain ASM33_03745 PF00999 Sodium/hydrogen exchanger family ASM33_03755 PF02223 Thymidylate kinase ASM33_03760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ASM33_03760 PF02843 Phosphoribosylglycinamide synthetase, C domain ASM33_03760 PF02844 Phosphoribosylglycinamide synthetase, N domain ASM33_03765 PF02403 Seryl-tRNA synthetase N-terminal domain ASM33_03765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASM33_03775 PF01207 Dihydrouridine synthase (Dus) ASM33_03780 PF02167 Cytochrome C1 family ASM33_03785 PF00033 Cytochrome b/b6/petB ASM33_03785 PF00032 Cytochrome b(C-terminal)/b6/petD ASM33_03790 PF00271 Helicase conserved C-terminal domain ASM33_03790 PF04851 Type III restriction enzyme, res subunit ASM33_03790 PF02151 UvrB/uvrC motif ASM33_03790 PF12344 Ultra-violet resistance protein B ASM33_03790 PF17757 UvrB interaction domain ASM33_03810 PF12705 PD-(D/E)XK nuclease superfamily ASM33_03810 PF13361 UvrD-like helicase C-terminal domain ASM33_03810 PF00580 UvrD/REP helicase N-terminal domain ASM33_03815 PF00288 GHMP kinases N terminal domain ASM33_03815 PF08544 GHMP kinases C terminal ASM33_03825 PF00950 ABC 3 transport family ASM33_03840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ASM33_03840 PF00361 Proton-conducting membrane transporter ASM33_03840 PF13244 Domain of unknown function (DUF4040) ASM33_03845 PF01219 Prokaryotic diacylglycerol kinase ASM33_03860 PF02817 e3 binding domain ASM33_03860 PF00364 Biotin-requiring enzyme ASM33_03860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ASM33_03880 PF01709 Transcriptional regulator ASM33_03900 PF00830 Ribosomal L28 family ASM33_03905 PF04055 Radical SAM superfamily ASM33_03905 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ASM33_03915 PF14622 Ribonuclease-III-like ASM33_03915 PF00035 Double-stranded RNA binding motif ASM33_03920 PF00953 Glycosyl transferase family 4 ASM33_03925 PF01351 Ribonuclease HII ASM33_03945 PF00464 Serine hydroxymethyltransferase ASM33_03960 PF13361 UvrD-like helicase C-terminal domain ASM33_03960 PF00580 UvrD/REP helicase N-terminal domain ASM33_03970 PF00390 Malic enzyme, N-terminal domain ASM33_03970 PF03949 Malic enzyme, NAD binding domain ASM33_03970 PF01515 Phosphate acetyl/butaryl transferase ASM33_03975 PF01066 CDP-alcohol phosphatidyltransferase ASM33_03995 PF13525 Outer membrane lipoprotein ASM33_04000 PF13085 2Fe-2S iron-sulfur cluster binding domain ASM33_04015 PF04608 Phosphatidylglycerophosphatase A ASM33_04030 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ASM33_04030 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ASM33_04035 PF00072 Response regulator receiver domain ASM33_04035 PF00486 Transcriptional regulatory protein, C terminal ASM33_04045 PF01386 Ribosomal L25p family ASM33_04045 PF14693 Ribosomal protein TL5, C-terminal domain ASM33_04050 PF01195 Peptidyl-tRNA hydrolase ASM33_04070 PF01180 Dihydroorotate dehydrogenase ASM33_04085 PF02910 Fumarate reductase flavoprotein C-term ASM33_04085 PF00890 FAD binding domain ASM33_04095 PF04452 RNA methyltransferase ASM33_04100 PF00834 Ribulose-phosphate 3 epimerase family ASM33_04110 PF00462 Glutaredoxin ASM33_04120 PF00285 Citrate synthase, C-terminal domain ASM33_04125 PF01649 Ribosomal protein S20 ASM33_04140 PF07690 Major Facilitator Superfamily ASM33_04160 PF01467 Cytidylyltransferase-like ASM33_04175 PF01255 Putative undecaprenyl diphosphate synthase ASM33_04180 PF01765 Ribosome recycling factor ASM33_04185 PF00696 Amino acid kinase family ASM33_04190 PF00889 Elongation factor TS ASM33_04195 PF00318 Ribosomal protein S2 ASM33_04210 PF00510 Cytochrome c oxidase subunit III ASM33_04215 PF02075 Crossover junction endodeoxyribonuclease RuvC ASM33_04220 PF01370 NAD dependent epimerase/dehydratase family ASM33_04220 PF08338 Domain of unknown function (DUF1731) ASM33_04230 PF07549 SecD/SecF GG Motif ASM33_04230 PF02355 Protein export membrane protein ASM33_04235 PF01118 Semialdehyde dehydrogenase, NAD binding domain ASM33_04235 PF02774 Semialdehyde dehydrogenase, dimerisation domain ASM33_04250 PF12327 FtsZ family, C-terminal domain ASM33_04250 PF00091 Tubulin/FtsZ family, GTPase domain ASM33_04265 PF01609 Transposase DDE domain ASM33_04285 PF12221 Bacterial membrane protein N terminal ASM33_04285 PF01145 SPFH domain / Band 7 family ASM33_04295 PF13180 PDZ domain ASM33_04315 PF00814 Glycoprotease family ASM33_04320 PF00133 tRNA synthetases class I (I, L, M and V) ASM33_04320 PF08264 Anticodon-binding domain of tRNA ASM33_04320 PF13603 Leucyl-tRNA synthetase, Domain 2 ASM33_04320 PF09334 tRNA synthetases class I (M) ASM33_04325 PF01551 Peptidase family M23 ASM33_04330 PF04545 Sigma-70, region 4 ASM33_04330 PF04539 Sigma-70 region 3 ASM33_04330 PF00140 Sigma-70 factor, region 1.2 ASM33_04330 PF03979 Sigma-70 factor, region 1.1 ASM33_04330 PF04546 Sigma-70, non-essential region ASM33_04330 PF04542 Sigma-70 region 2 ASM33_04335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ASM33_04350 PF03334 Na+/H+ antiporter subunit ASM33_04355 PF01192 RNA polymerase Rpb6 ASM33_04365 PF00731 AIR carboxylase ASM33_04370 PF01119 DNA mismatch repair protein, C-terminal domain ASM33_04370 PF08676 MutL C terminal dimerisation domain ASM33_04380 PF01225 Mur ligase family, catalytic domain ASM33_04380 PF02875 Mur ligase family, glutamate ligase domain ASM33_04380 PF08245 Mur ligase middle domain ASM33_04385 PF03330 Lytic transglycolase ASM33_04400 PF00665 Integrase core domain ASM33_04405 PF03918 Cytochrome C biogenesis protein ASM33_04415 PF00111 2Fe-2S iron-sulfur cluster binding domain ASM33_04420 PF08245 Mur ligase middle domain ASM33_04435 PF00677 Lumazine binding domain ASM33_04450 PF03070 TENA/THI-4/PQQC family ASM33_04455 PF02772 S-adenosylmethionine synthetase, central domain ASM33_04455 PF00438 S-adenosylmethionine synthetase, N-terminal domain ASM33_04455 PF02773 S-adenosylmethionine synthetase, C-terminal domain ASM33_04465 PF00034 Cytochrome c ASM33_04475 PF00749 tRNA synthetases class I (E and Q), catalytic domain ASM33_04485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ASM33_04485 PF00529 HlyD membrane-fusion protein of T1SS ASM33_04495 PF00334 Nucleoside diphosphate kinase ASM33_04505 PF00762 Ferrochelatase ASM33_04520 PF01039 Carboxyl transferase domain ASM33_04525 PF01783 Ribosomal L32p protein family ASM33_04530 PF02504 Fatty acid synthesis protein ASM33_04535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ASM33_04535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ASM33_04545 PF00106 short chain dehydrogenase ASM33_04550 PF03631 Virulence factor BrkB ASM33_04555 PF02142 MGS-like domain ASM33_04555 PF01808 AICARFT/IMPCHase bienzyme ASM33_04560 PF01113 Dihydrodipicolinate reductase, N-terminus ASM33_04560 PF05173 Dihydrodipicolinate reductase, C-terminus ASM33_04565 PF00005 ABC transporter ASM33_04570 PF00665 Integrase core domain ASM33_04575 PF01609 Transposase DDE domain ASM33_04590 PF00012 Hsp70 protein ASM33_04595 PF07743 HSCB C-terminal oligomerisation domain ASM33_04600 PF01521 Iron-sulphur cluster biosynthesis ASM33_04605 PF01592 NifU-like N terminal domain ASM33_04615 PF02811 PHP domain ASM33_04615 PF14579 Helix-hairpin-helix motif ASM33_04615 PF07733 Bacterial DNA polymerase III alpha NTPase domain ASM33_04615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ASM33_04620 PF01250 Ribosomal protein S6 ASM33_04625 PF01084 Ribosomal protein S18 ASM33_04630 PF01281 Ribosomal protein L9, N-terminal domain ASM33_04630 PF03948 Ribosomal protein L9, C-terminal domain ASM33_04635 PF00206 Lyase ASM33_04635 PF10397 Adenylosuccinate lyase C-terminus ASM33_04650 PF04551 GcpE protein ASM33_04660 PF17755 UvrA DNA-binding domain ASM33_04660 PF17760 UvrA interaction domain ASM33_04665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ASM33_04670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ASM33_04675 PF00361 Proton-conducting membrane transporter ASM33_04675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ASM33_04680 PF00361 Proton-conducting membrane transporter ASM33_04685 PF00361 Proton-conducting membrane transporter ASM33_04695 PF02237 Biotin protein ligase C terminal domain ASM33_04695 PF03099 Biotin/lipoate A/B protein ligase family ASM33_04700 PF03100 CcmE ASM33_04735 PF11953 Domain of unknown function (DUF3470) ASM33_04735 PF00037 4Fe-4S binding domain ASM33_04740 PF02481 DNA recombination-mediator protein A ASM33_04740 PF17782 DprA winged helix domain ASM33_04745 PF01321 Creatinase/Prolidase N-terminal domain ASM33_04745 PF00557 Metallopeptidase family M24 ASM33_04755 PF03796 DnaB-like helicase C terminal domain ASM33_04755 PF00772 DnaB-like helicase N terminal domain ASM33_04775 PF01609 Transposase DDE domain ASM33_04785 PF00872 Transposase, Mutator family ASM33_04805 PF02796 Helix-turn-helix domain of resolvase ASM33_04805 PF00239 Resolvase, N terminal domain ASM33_04955 PF01348 Type II intron maturase ASM33_04955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ASM33_04960 PF00239 Resolvase, N terminal domain ASM33_04960 PF13408 Recombinase zinc beta ribbon domain ASM33_04960 PF07508 Recombinase ASM33_05025 PF04984 Phage tail sheath protein subtilisin-like domain ASM33_05025 PF17482 Phage tail sheath C-terminal domain ASM33_05090 PF01653 NAD-dependent DNA ligase adenylation domain ASM33_05090 PF12826 Helix-hairpin-helix motif ASM33_05090 PF03120 NAD-dependent DNA ligase OB-fold domain ASM33_05090 PF00533 BRCA1 C Terminus (BRCT) domain ASM33_05090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ASM33_05115 PF01381 Helix-turn-helix ASM33_05120 PF01381 Helix-turn-helix ASM33_05130 PF04002 RadC-like JAB domain ASM33_05175 PF04002 RadC-like JAB domain ASM33_05180 PF02371 Transposase IS116/IS110/IS902 family ASM33_05180 PF01548 Transposase ASM33_05200 PF00533 BRCA1 C Terminus (BRCT) domain ASM33_05200 PF01653 NAD-dependent DNA ligase adenylation domain ASM33_05200 PF03120 NAD-dependent DNA ligase OB-fold domain ASM33_05200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ASM33_05200 PF12826 Helix-hairpin-helix motif ASM33_05220 PF01555 DNA methylase ASM33_05230 PF13091 PLD-like domain ASM33_05245 PF12796 Ankyrin repeats (3 copies) ASM33_05280 PF17482 Phage tail sheath C-terminal domain ASM33_05280 PF04984 Phage tail sheath protein subtilisin-like domain ASM33_05340 PF01609 Transposase DDE domain ASM33_05395 PF01555 DNA methylase ASM33_05395 PF18755 Restriction Enzyme Adenine Methylase Associated ASM33_05420 PF06250 YhcG PDDEXK nuclease domain ASM33_05420 PF17761 DUF1016 N-terminal domain ASM33_05485 PF02371 Transposase IS116/IS110/IS902 family ASM33_05485 PF01548 Transposase ASM33_05515 PF00239 Resolvase, N terminal domain ASM33_05515 PF02796 Helix-turn-helix domain of resolvase ASM33_05520 PF01381 Helix-turn-helix ASM33_05525 PF13784 Fic/DOC family N-terminal ASM33_05525 PF02661 Fic/DOC family ASM33_05545 PF12796 Ankyrin repeats (3 copies) ASM33_05570 PF04002 RadC-like JAB domain ASM33_05585 PF07508 Recombinase ASM33_05585 PF13408 Recombinase zinc beta ribbon domain ASM33_05585 PF00239 Resolvase, N terminal domain ASM33_05630 PF17482 Phage tail sheath C-terminal domain ASM33_05630 PF04984 Phage tail sheath protein subtilisin-like domain ASM33_05685 PF13091 PLD-like domain ASM33_05725 PF01029 NusB family ASM33_05730 PF00885 6,7-dimethyl-8-ribityllumazine synthase ASM33_05735 PF14849 YidC periplasmic domain ASM33_05735 PF02096 60Kd inner membrane protein ASM33_05745 PF00986 DNA gyrase B subunit, carboxyl terminus ASM33_05745 PF00204 DNA gyrase B ASM33_05745 PF01751 Toprim domain ASM33_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ASM33_05755 PF18324 Hypothetical protein TT1725 ASM33_05755 PF00180 Isocitrate/isopropylmalate dehydrogenase ASM33_05775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ASM33_05775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ASM33_05785 PF00579 tRNA synthetases class I (W and Y) ASM33_05795 PF00578 AhpC/TSA family ASM33_05795 PF10417 C-terminal domain of 1-Cys peroxiredoxin ASM33_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_05845 PF01702 Queuine tRNA-ribosyltransferase ASM33_05855 PF00873 AcrB/AcrD/AcrF family ASM33_05870 PF03618 Kinase/pyrophosphorylase ASM33_05885 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ASM33_05885 PF01243 Pyridoxamine 5'-phosphate oxidase ASM33_05890 PF09312 SurA N-terminal domain ASM33_05895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ASM33_05895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ASM33_05920 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_05930 PF01609 Transposase DDE domain ASM33_05945 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ASM33_05945 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ASM33_05945 PF10531 SLBB domain ASM33_05980 PF01791 DeoC/LacD family aldolase ASM33_05990 PF00056 lactate/malate dehydrogenase, NAD binding domain ASM33_05990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ASM33_05995 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ASM33_06000 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ASM33_06005 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ASM33_06010 PF01230 HIT domain ASM33_06025 PF00696 Amino acid kinase family ASM33_06030 PF01926 50S ribosome-binding GTPase ASM33_06035 PF03462 PCRF domain ASM33_06035 PF00472 RF-1 domain ASM33_06045 PF02769 AIR synthase related protein, C-terminal domain ASM33_06045 PF00586 AIR synthase related protein, N-terminal domain ASM33_06080 PF00665 Integrase core domain ASM33_06100 PF03091 CutA1 divalent ion tolerance protein ASM33_06110 PF01795 MraW methylase family ASM33_06115 PF07690 Major Facilitator Superfamily ASM33_06115 PF00083 Sugar (and other) transporter ASM33_06120 PF07687 Peptidase dimerisation domain ASM33_06120 PF01546 Peptidase family M20/M25/M40 ASM33_06125 PF01300 Telomere recombination ASM33_06130 PF12169 DNA polymerase III subunits gamma and tau domain III ASM33_06135 PF17827 PrmC N-terminal domain ASM33_06135 PF05175 Methyltransferase small domain ASM33_06140 PF00083 Sugar (and other) transporter ASM33_06140 PF08946 Osmosensory transporter coiled coil ASM33_06145 PF01975 Survival protein SurE ASM33_06150 PF00679 Elongation factor G C-terminus ASM33_06150 PF03144 Elongation factor Tu domain 2 ASM33_06150 PF14492 Elongation Factor G, domain II ASM33_06150 PF06421 GTP-binding protein LepA C-terminus ASM33_06150 PF00009 Elongation factor Tu GTP binding domain ASM33_06165 PF03167 Uracil DNA glycosylase superfamily ASM33_06170 PF01327 Polypeptide deformylase ASM33_06175 PF02491 SHS2 domain inserted in FTSA ASM33_06185 PF00557 Metallopeptidase family M24 ASM33_06190 PF00456 Transketolase, thiamine diphosphate binding domain ASM33_06190 PF02780 Transketolase, C-terminal domain ASM33_06190 PF02779 Transketolase, pyrimidine binding domain ASM33_06195 PF00163 Ribosomal protein S4/S9 N-terminal domain ASM33_06195 PF01479 S4 domain ASM33_06205 PF04384 Iron-sulphur cluster assembly ASM33_06235 PF01926 50S ribosome-binding GTPase ASM33_06235 PF06071 Protein of unknown function (DUF933) ASM33_06260 PF04545 Sigma-70, region 4 ASM33_06260 PF00140 Sigma-70 factor, region 1.2 ASM33_06260 PF04542 Sigma-70 region 2 ASM33_06275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ASM33_06280 PF01609 Transposase DDE domain ASM33_06295 PF13735 tRNA nucleotidyltransferase domain 2 putative ASM33_06295 PF12627 Probable RNA and SrmB- binding site of polymerase A ASM33_06295 PF01743 Poly A polymerase head domain ASM33_06310 PF00665 Integrase core domain ASM33_06345 PF00162 Phosphoglycerate kinase ASM33_06355 PF00364 Biotin-requiring enzyme ASM33_06355 PF02817 e3 binding domain ASM33_06355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ASM33_06370 PF00478 IMP dehydrogenase / GMP reductase domain ASM33_06370 PF00571 CBS domain ASM33_06380 PF02780 Transketolase, C-terminal domain ASM33_06380 PF02779 Transketolase, pyrimidine binding domain ASM33_06380 PF00364 Biotin-requiring enzyme ASM33_06400 PF06055 Exopolysaccharide synthesis, ExoD ASM33_06405 PF01406 tRNA synthetases class I (C) catalytic domain ASM33_06405 PF09190 DALR domain ASM33_06410 PF08275 DNA primase catalytic core, N-terminal domain ASM33_06410 PF01807 CHC2 zinc finger ASM33_06410 PF13662 Toprim domain ASM33_06420 PF02628 Cytochrome oxidase assembly protein ASM33_06440 PF00137 ATP synthase subunit C ASM33_06445 PF00119 ATP synthase A chain ASM33_06500 PF00579 tRNA synthetases class I (W and Y) ASM33_06515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ASM33_06515 PF00476 DNA polymerase family A ASM33_06515 PF01367 5'-3' exonuclease, C-terminal SAM fold ASM33_06530 PF17762 HTH domain found in ParB protein ASM33_06530 PF02195 ParB-like nuclease domain ASM33_06535 PF13614 AAA domain ASM33_06545 PF02230 Phospholipase/Carboxylesterase ASM33_06555 PF00589 Phage integrase family ASM33_06555 PF02899 Phage integrase, N-terminal SAM-like domain ASM33_06560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ASM33_06560 PF07992 Pyridine nucleotide-disulphide oxidoreductase ASM33_06580 PF00676 Dehydrogenase E1 component ASM33_06610 PF00886 Ribosomal protein S16 ASM33_06615 PF00348 Polyprenyl synthetase ASM33_06620 PF01025 GrpE ASM33_06625 PF02416 mttA/Hcf106 family ASM33_06635 PF01479 S4 domain ASM33_06635 PF00849 RNA pseudouridylate synthase ASM33_06660 PF00750 tRNA synthetases class I (R) ASM33_06660 PF03485 Arginyl tRNA synthetase N terminal domain ASM33_06660 PF05746 DALR anticodon binding domain ASM33_06675 PF00202 Aminotransferase class-III ASM33_06685 PF08240 Alcohol dehydrogenase GroES-like domain ASM33_06685 PF00107 Zinc-binding dehydrogenase ASM33_06690 PF02789 Cytosol aminopeptidase family, N-terminal domain ASM33_06690 PF00883 Cytosol aminopeptidase family, catalytic domain ASM33_06700 PF00665 Integrase core domain ASM33_06705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ASM33_06705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ASM33_06710 PF00902 Sec-independent protein translocase protein (TatC) ASM33_06715 PF08264 Anticodon-binding domain of tRNA ASM33_06715 PF00133 tRNA synthetases class I (I, L, M and V) ASM33_06730 PF00117 Glutamine amidotransferase class-I ASM33_06730 PF06418 CTP synthase N-terminus ASM33_06740 PF14437 MafB19-like deaminase ASM33_06745 PF13840 ACT domain ASM33_06745 PF00696 Amino acid kinase family ASM33_06745 PF01842 ACT domain ASM33_06750 PF00156 Phosphoribosyl transferase domain ASM33_06750 PF13537 Glutamine amidotransferase domain ASM33_06755 PF01609 Transposase DDE domain ASM33_06765 PF01580 FtsK/SpoIIIE family ASM33_06765 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ASM33_06765 PF17854 FtsK alpha domain ASM33_06765 PF09397 Ftsk gamma domain ASM33_06775 PF01609 Transposase DDE domain ASM33_06805 PF00133 tRNA synthetases class I (I, L, M and V) ASM33_06805 PF08264 Anticodon-binding domain of tRNA ASM33_06815 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ASM33_06835 PF01609 Transposase DDE domain ASM33_06875 PF07943 Penicillin-binding protein 5, C-terminal domain ASM33_06875 PF00768 D-alanyl-D-alanine carboxypeptidase ASM33_06880 PF02401 LytB protein ASM33_06885 PF00905 Penicillin binding protein transpeptidase domain ASM33_06885 PF03717 Penicillin-binding Protein dimerisation domain ASM33_06900 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ASM33_06900 PF00013 KH domain ASM33_06900 PF03725 3' exoribonuclease family, domain 2 ASM33_06900 PF00575 S1 RNA binding domain ASM33_06900 PF01138 3' exoribonuclease family, domain 1 ASM33_06905 PF00312 Ribosomal protein S15 ASM33_06910 PF01509 TruB family pseudouridylate synthase (N terminal domain) ASM33_06910 PF16198 tRNA pseudouridylate synthase B C-terminal domain ASM33_06915 PF01609 Transposase DDE domain ASM33_06945 PF04860 Phage portal protein ASM33_06955 PF00684 DnaJ central domain ASM33_06955 PF00226 DnaJ domain ASM33_06955 PF01556 DnaJ C terminal domain ASM33_06965 PF02386 Cation transport protein ASM33_06985 PF01632 Ribosomal protein L35 ASM33_06990 PF00453 Ribosomal protein L20 ASM33_06995 PF02911 Formyl transferase, C-terminal domain ASM33_06995 PF00551 Formyl transferase ASM33_07040 PF12704 MacB-like periplasmic core domain ASM33_07040 PF02687 FtsX-like permease family ASM33_07055 PF00263 Bacterial type II and III secretion system protein ASM33_07055 PF03958 Bacterial type II/III secretion system short domain ASM33_07075 PF07508 Recombinase ASM33_07075 PF00239 Resolvase, N terminal domain ASM33_07075 PF13408 Recombinase zinc beta ribbon domain ASM33_07090 PF04002 RadC-like JAB domain ASM33_07110 PF01609 Transposase DDE domain ASM33_07120 PF00872 Transposase, Mutator family ASM33_07140 PF02796 Helix-turn-helix domain of resolvase ASM33_07140 PF00239 Resolvase, N terminal domain ASM33_07245 PF18755 Restriction Enzyme Adenine Methylase Associated ASM33_07245 PF01555 DNA methylase ASM33_07300 PF13408 Recombinase zinc beta ribbon domain ASM33_07300 PF00239 Resolvase, N terminal domain ASM33_07300 PF07508 Recombinase ASM33_07395 PF01555 DNA methylase ASM33_07395 PF18755 Restriction Enzyme Adenine Methylase Associated ASM33_07500 PF17482 Phage tail sheath C-terminal domain ASM33_07500 PF04984 Phage tail sheath protein subtilisin-like domain ASM33_07555 PF13091 PLD-like domain ASM33_07580 PF01653 NAD-dependent DNA ligase adenylation domain ASM33_07580 PF00533 BRCA1 C Terminus (BRCT) domain ASM33_07580 PF12826 Helix-hairpin-helix motif ASM33_07580 PF03120 NAD-dependent DNA ligase OB-fold domain ASM33_07605 PF00239 Resolvase, N terminal domain ASM33_07605 PF13408 Recombinase zinc beta ribbon domain ASM33_07605 PF07508 Recombinase ASM33_07620 PF04002 RadC-like JAB domain ASM33_07630 PF01381 Helix-turn-helix ASM33_07645 PF13408 Recombinase zinc beta ribbon domain ASM33_07645 PF07508 Recombinase ASM33_07645 PF00239 Resolvase, N terminal domain ASM33_07690 PF01556 DnaJ C terminal domain ASM33_07690 PF16713 Enriched in aromatic and glycine Residues box ASM33_07690 PF00226 DnaJ domain ASM33_07700 PF03129 Anticodon binding domain ASM33_07700 PF13393 Histidyl-tRNA synthetase ASM33_07710 PF01926 50S ribosome-binding GTPase ASM33_07710 PF12631 MnmE helical domain ASM33_07710 PF10396 GTP-binding protein TrmE N-terminus ASM33_07715 PF13505 Outer membrane protein beta-barrel domain ASM33_07730 PF01066 CDP-alcohol phosphatidyltransferase ASM33_07735 PF02666 Phosphatidylserine decarboxylase ASM33_07740 PF00154 recA bacterial DNA recombination protein ASM33_07775 PF03483 B3/4 domain ASM33_07775 PF03484 tRNA synthetase B5 domain ASM33_07775 PF03147 Ferredoxin-fold anticodon binding domain ASM33_07775 PF01588 Putative tRNA binding domain ASM33_07775 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ASM33_07795 PF01609 Transposase DDE domain ASM33_07800 PF01018 GTP1/OBG ASM33_07800 PF01926 50S ribosome-binding GTPase ASM33_07805 PF00113 Enolase, C-terminal TIM barrel domain ASM33_07805 PF03952 Enolase, N-terminal domain ASM33_07810 PF00814 Glycoprotease family ASM33_07825 PF00975 Thioesterase domain ASM33_07835 PF00664 ABC transporter transmembrane region ASM33_07835 PF00005 ABC transporter ASM33_07840 PF00005 ABC transporter ASM33_07840 PF08402 TOBE domain ASM33_07850 PF03129 Anticodon binding domain ASM33_07850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ASM33_07880 PF00121 Triosephosphate isomerase ASM33_07890 PF00664 ABC transporter transmembrane region ASM33_07890 PF00005 ABC transporter ASM33_07895 PF01040 UbiA prenyltransferase family ASM33_07900 PF02033 Ribosome-binding factor A ASM33_07905 PF11987 Translation-initiation factor 2 ASM33_07905 PF04760 Translation initiation factor IF-2, N-terminal region ASM33_07905 PF00009 Elongation factor Tu GTP binding domain ASM33_07910 PF00575 S1 RNA binding domain ASM33_07910 PF13184 NusA-like KH domain ASM33_07910 PF08529 NusA N-terminal domain ASM33_07930 PF00749 tRNA synthetases class I (E and Q), catalytic domain ASM33_07945 PF00266 Aminotransferase class-V ASM33_07960 PF01132 Elongation factor P (EF-P) OB domain ASM33_07960 PF09285 Elongation factor P, C-terminal ASM33_07960 PF08207 Elongation factor P (EF-P) KOW-like domain ASM33_07970 PF13932 GidA associated domain ASM33_07970 PF01134 Glucose inhibited division protein A ASM33_07975 PF01979 Amidohydrolase family ASM33_07990 PF00665 Integrase core domain ASM33_07995 PF01926 50S ribosome-binding GTPase ASM33_07995 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ASM33_08020 PF00549 CoA-ligase ASM33_08020 PF08442 ATP-grasp domain ASM33_08025 PF02629 CoA binding domain ASM33_08025 PF00549 CoA-ligase ASM33_08035 PF00919 Uncharacterized protein family UPF0004 ASM33_08035 PF04055 Radical SAM superfamily ASM33_08040 PF00676 Dehydrogenase E1 component ASM33_08040 PF16078 2-oxoglutarate dehydrogenase N-terminus ASM33_08040 PF16870 2-oxoglutarate dehydrogenase C-terminal ASM33_08040 PF02779 Transketolase, pyrimidine binding domain ASM33_08070 PF00270 DEAD/DEAH box helicase ASM33_08070 PF00271 Helicase conserved C-terminal domain ASM33_08075 PF00313 'Cold-shock' DNA-binding domain ASM33_08080 PF01523 Putative modulator of DNA gyrase ASM33_08085 PF00231 ATP synthase ASM33_08110 PF00268 Ribonucleotide reductase, small chain ASM33_08130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ASM33_08130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ASM33_08130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ASM33_08130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ASM33_08135 PF01594 AI-2E family transporter ASM33_08145 PF08241 Methyltransferase domain ASM33_08170 PF00468 Ribosomal protein L34 ASM33_08360 PF02325 YGGT family ASM33_08385 PF01050 Mannose-6-phosphate isomerase ASM33_08385 PF00483 Nucleotidyl transferase ASM33_08390 PF00444 Ribosomal protein L36 ASM33_08520 PF02875 Mur ligase family, glutamate ligase domain ASM33_08520 PF08245 Mur ligase middle domain ASM33_08520 PF01225 Mur ligase family, catalytic domain