locus-tag	class	description
GOY07_00010	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
GOY07_00015	COG0436	Aminotransferase
GOY07_00025	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
GOY07_00040	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
GOY07_00050	COG0531	amino acid
GOY07_00065	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
GOY07_00080	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GOY07_00085	COG0493	'glutamate synthase
GOY07_00085	COG0543	2 iron, 2 sulfur cluster binding
GOY07_00090	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
GOY07_00095	COG2094	Belongs to the DNA glycosylase MPG family
GOY07_00100	COG0039	L-malate dehydrogenase activity
GOY07_00105	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOY07_00110	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOY07_00115	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOY07_00120	COG0537	adenosine 5'-monophosphoramidase activity
GOY07_00145	COG0187	DNA topoisomerase II activity
GOY07_00150	COG0154	amidase activity
GOY07_00160	COG0681	Belongs to the peptidase S26 family
GOY07_00165	COG0443	Heat shock 70 kDa protein
GOY07_00170	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
GOY07_00175	COG0316	Belongs to the HesB IscA family
GOY07_00185	COG0552	protein localization to endoplasmic reticulum
GOY07_00200	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GOY07_00205	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GOY07_00210	COG0336	Belongs to the RNA methyltransferase TrmD family
GOY07_00215	COG0335	large ribosomal subunit rRNA binding
GOY07_00220	COG0581	inorganic phosphate transmembrane transporter activity
GOY07_00225	COG0047	phosphoribosylformylglycinamidine synthase activity
GOY07_00230	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
GOY07_00235	COG1115	amino acid carrier protein
GOY07_00245	COG1183	phosphatidylcholine synthase activity
GOY07_00250	COG0688	phosphatidylethanolamine metabolic process
GOY07_00260	COG0101	tRNA pseudouridine synthase activity
GOY07_00275	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GOY07_00295	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GOY07_00300	COG0723	plastoquinol--plastocyanin reductase activity
GOY07_00310	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GOY07_00320	COG3335	DDE superfamily endonuclease
GOY07_00325	COG0519	Catalyzes the synthesis of GMP from XMP
GOY07_00325	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GOY07_00330	COG1253	flavin adenine dinucleotide binding
GOY07_00335	COG0527	aspartate kinase activity
GOY07_00360	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GOY07_00370	COG4122	O-methyltransferase activity
GOY07_00385	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GOY07_00390	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
GOY07_00410	COG4536	flavin adenine dinucleotide binding
GOY07_00420	COG0163	prenyltransferase activity
GOY07_00425	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
GOY07_00450	COG0442	prolyl-tRNA aminoacylation
GOY07_00455	COG0736	holo-[acyl-carrier-protein] synthase activity
GOY07_00460	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
GOY07_00485	COG0045	succinate-CoA ligase (ADP-forming) activity
GOY07_00495	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
GOY07_00535	COG0312	modulator of DNA gyrase
GOY07_00550	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
GOY07_00555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOY07_00565	COG1034	ATP synthesis coupled electron transport
GOY07_00570	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
GOY07_00580	COG0113	porphobilinogen synthase activity
GOY07_00585	COG0167	dihydroorotate dehydrogenase activity
GOY07_00605	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GOY07_00610	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GOY07_00620	COG0322	excinuclease ABC activity
GOY07_00625	COG0751	glycine-tRNA ligase activity
GOY07_00630	COG0752	glycyl-tRNA synthetase alpha subunit
GOY07_00640	COG0473	3-isopropylmalate dehydrogenase activity
GOY07_00645	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GOY07_00650	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GOY07_00655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GOY07_00665	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GOY07_00670	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
GOY07_00685	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GOY07_00690	COG1230	cation diffusion facilitator family transporter
GOY07_00705	COG0540	Belongs to the ATCase OTCase family
GOY07_00720	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GOY07_00725	COG0254	rRNA binding
GOY07_00730	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
GOY07_00740	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
GOY07_00750	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
GOY07_00755	COG1160	GTP binding
GOY07_00765	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
GOY07_00770	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
GOY07_00790	COG0194	GDP metabolic process
GOY07_00805	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
GOY07_00820	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
GOY07_00825	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GOY07_00850	COG1181	Belongs to the D-alanine--D-alanine ligase family
GOY07_00855	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GOY07_00865	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GOY07_00875	COG0492	ferredoxin-NADP+ reductase activity
GOY07_00880	COG0450	alkyl hydroperoxide reductase
GOY07_00885	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GOY07_00890	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
GOY07_00895	COG0740	serine-type endopeptidase activity
GOY07_00900	COG0544	peptidyl-prolyl cis-trans isomerase activity
GOY07_00920	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
GOY07_00925	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GOY07_00945	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
GOY07_00950	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GOY07_00965	COG0307	riboflavin synthase, alpha
GOY07_00970	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GOY07_00975	COG0218	Necessary for normal cell division and for the maintenance of normal septation
GOY07_00980	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GOY07_00985	COG0756	dUTP diphosphatase activity
GOY07_01000	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOY07_01025	COG0653	protein targeting
GOY07_01045	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GOY07_01050	COG0049	tRNA binding
GOY07_01055	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GOY07_01070	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
GOY07_01075	COG0088	Forms part of the polypeptide exit tunnel
GOY07_01085	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
GOY07_01090	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GOY07_01095	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GOY07_01100	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
GOY07_01105	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
GOY07_01115	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GOY07_01120	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GOY07_01125	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
GOY07_01130	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GOY07_01135	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GOY07_01140	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GOY07_01150	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
GOY07_01155	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GOY07_01160	COG0200	Binds to the 23S rRNA
GOY07_01165	COG0201	protein transport
GOY07_01170	COG0563	adenylate kinase activity
GOY07_01175	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GOY07_01180	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GOY07_01185	COG0202	RNA polymerase activity
GOY07_01190	COG0203	ribosomal protein L17
GOY07_01200	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
GOY07_01205	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GOY07_01210	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GOY07_01215	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
GOY07_01215	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
GOY07_01235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOY07_01245	COG2239	Acts as a magnesium transporter
GOY07_01260	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
GOY07_01265	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GOY07_01290	COG0305	Participates in initiation and elongation during chromosome replication
GOY07_01295	COG1372	Participates in initiation and elongation during chromosome replication
GOY07_01295	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOY07_01305	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GOY07_01310	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GOY07_01315	COG0261	This protein binds to 23S rRNA in the presence of protein L20
GOY07_01320	COG0211	Belongs to the bacterial ribosomal protein bL27 family
GOY07_01330	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GOY07_01340	COG1845	cytochrome c oxidase, subunit III
GOY07_01350	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
GOY07_01355	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOY07_01355	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
GOY07_01360	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GOY07_01385	COG0230	Belongs to the bacterial ribosomal protein bL34 family
GOY07_01390	COG0573	inorganic phosphate transmembrane transporter activity
GOY07_01395	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GOY07_01400	COG0355	proton-transporting ATP synthase activity, rotational mechanism
GOY07_01410	COG0126	phosphoglycerate kinase activity
GOY07_01415	COG0492	ferredoxin-NADP+ reductase activity
GOY07_01420	COG0354	folic acid binding
GOY07_01425	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
GOY07_01430	COG0459	protein refolding
GOY07_01445	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GOY07_01450	COG3932	Exopolysaccharide synthesis, ExoD
GOY07_01455	COG0215	cysteine-tRNA ligase activity
GOY07_01500	COG1278	Cold shock
GOY07_01505	COG0312	modulator of DNA gyrase
GOY07_01510	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GOY07_01515	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GOY07_01520	COG0174	glutamine synthetase
GOY07_01525	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GOY07_01545	COG3736	Type IV secretory pathway, component VirB8
GOY07_01560	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
GOY07_01580	COG1138	Cytochrome C-type biogenesis protein
GOY07_01600	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
GOY07_01610	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GOY07_01625	COG0358	DNA primase activity
GOY07_01630	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GOY07_01635	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOY07_01650	COG2814	Major facilitator Superfamily
GOY07_01665	COG1132	(ABC) transporter
GOY07_01670	COG0018	arginyl-trna synthetase
GOY07_01680	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
GOY07_01685	COG0670	Belongs to the BI1 family
GOY07_01710	COG2009	succinate dehydrogenase
GOY07_01715	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
GOY07_01730	COG4221	oxidoreductase activity
GOY07_01745	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOY07_01745	COG0022	dehydrogenase e1 component
GOY07_01750	COG0284	orotidine-5'-phosphate decarboxylase activity
GOY07_01755	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GOY07_01765	COG0739	heme binding
GOY07_01770	COG0217	transcriptional regulatory protein
GOY07_01780	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
GOY07_01785	COG0281	malic enzyme
GOY07_01785	COG0280	phosphate acetyltransferase
GOY07_01790	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GOY07_01795	COG0489	protein tyrosine kinase activity
GOY07_01825	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GOY07_01835	COG4589	Belongs to the CDS family
GOY07_01840	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GOY07_01845	COG0233	cytoplasmic translational termination
GOY07_01850	COG0528	UMP kinase activity
GOY07_01855	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
GOY07_01860	COG0052	Belongs to the universal ribosomal protein uS2 family
GOY07_01880	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GOY07_01885	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
GOY07_01890	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
GOY07_01895	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GOY07_01905	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GOY07_01910	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
GOY07_01915	COG0109	protoheme IX farnesyltransferase activity
GOY07_01930	COG3335	DDE superfamily endonuclease
GOY07_01935	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GOY07_01940	COG0805	protein transport
GOY07_01960	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
GOY07_01970	COG0617	tRNA 3'-terminal CCA addition
GOY07_01975	COG0012	GTP binding
GOY07_01985	COG1494	fructose-1,6-bisphosphatase
GOY07_01995	COG1074	ATP-dependent DNA helicase activity
GOY07_02000	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
GOY07_02010	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GOY07_02025	COG1686	Belongs to the peptidase S11 family
GOY07_02030	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GOY07_02040	COG0542	response to heat
GOY07_02045	COG2902	Dehydrogenase
GOY07_02065	COG0360	Binds together with S18 to 16S ribosomal RNA
GOY07_02070	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GOY07_02075	COG0359	binds to the 23S rRNA
GOY07_02080	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
GOY07_02095	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GOY07_02100	COG1530	ribonuclease E activity
GOY07_02105	COG0443	Heat shock 70 kDa protein
GOY07_02110	COG0271	Belongs to the BolA IbaG family
GOY07_02115	COG0626	cystathionine gamma-synthase activity
GOY07_02125	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
GOY07_02155	COG0812	UDP-N-acetylmuramate dehydrogenase activity
GOY07_02170	COG0525	valine-tRNA ligase activity
GOY07_02180	COG0590	tRNA wobble adenosine to inosine editing
GOY07_02185	COG0504	CTP synthase activity
GOY07_02195	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
GOY07_02195	COG0574	Belongs to the PEP-utilizing enzyme family
GOY07_02205	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GOY07_02210	COG0564	pseudouridine synthase activity
GOY07_02220	COG0484	heat shock protein binding
GOY07_02230	COG0495	leucyl-tRNA aminoacylation
GOY07_02265	COG0330	HflC and HflK could
GOY07_02290	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GOY07_02300	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
GOY07_02305	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
GOY07_02315	COG0326	Molecular chaperone. Has ATPase activity
GOY07_02320	COG0156	8-amino-7-oxononanoate synthase activity
GOY07_02330	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
GOY07_02335	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GOY07_02340	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
GOY07_02345	COG2202	Pas domain
GOY07_02345	COG2205	protein histidine kinase activity
GOY07_02350	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GOY07_02370	COG0772	Belongs to the SEDS family
GOY07_02375	COG4133	protoheme IX ABC transporter activity
GOY07_02385	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
GOY07_02390	COG0477	Major facilitator Superfamily
GOY07_02395	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
GOY07_02400	COG2857	Cytochrome c1
GOY07_02400	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
GOY07_02405	COG0556	nucleotide-excision repair
GOY07_02430	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GOY07_02435	COG1006	Multisubunit Na H antiporter MnhC subunit
GOY07_02460	COG1758	RNA polymerase activity
GOY07_02470	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
GOY07_02475	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GOY07_02480	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GOY07_02485	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GOY07_02490	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
GOY07_02495	COG0193	aminoacyl-tRNA hydrolase activity
GOY07_02500	COG0571	ribonuclease III activity
GOY07_02520	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GOY07_02530	COG1830	Aldolase
GOY07_02545	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
GOY07_02565	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GOY07_02575	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
GOY07_02580	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
GOY07_02595	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GOY07_02605	COG0009	L-threonylcarbamoyladenylate synthase
GOY07_02625	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GOY07_02630	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GOY07_02655	COG0085	RNA polymerase activity
GOY07_02655	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GOY07_02660	COG0222	ribosome binding
GOY07_02665	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GOY07_02670	COG0081	regulation of translation
GOY07_02675	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
GOY07_02680	COG0250	Participates in transcription elongation, termination and antitermination
GOY07_02695	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GOY07_02710	COG0505	Belongs to the CarA family
GOY07_02725	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GOY07_02750	COG0024	Methionine aminopeptidase
GOY07_02760	COG0242	peptide deformylase activity
GOY07_02765	COG1573	uracil-dna glycosylase
GOY07_02770	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
GOY07_02790	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GOY07_02800	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GOY07_02815	COG1104	cysteine desulfurase activity
GOY07_02840	COG0124	histidyl-tRNA synthetase
GOY07_02845	COG0138	bifunctional purine biosynthesis protein purh
GOY07_02860	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GOY07_02865	COG0196	riboflavin kinase activity
GOY07_02880	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GOY07_02885	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GOY07_02890	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOY07_02895	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
GOY07_02940	COG3474	cytochrome
GOY07_02955	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
GOY07_02960	COG0649	NAD binding
GOY07_02970	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
GOY07_02975	COG0148	phosphopyruvate hydratase activity
GOY07_02980	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GOY07_02990	COG0742	ribosomal rna small subunit methyltransferase
GOY07_03005	COG3704	protein secretion by the type IV secretion system
GOY07_03010	COG3704	protein secretion by the type IV secretion system
GOY07_03015	COG3704	protein secretion by the type IV secretion system
GOY07_03020	COG3451	type IV secretory pathway VirB4
GOY07_03030	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
GOY07_03060	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
GOY07_03065	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOY07_03070	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
GOY07_03075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GOY07_03095	COG1862	Preprotein translocase
GOY07_03100	COG0612	Peptidase, M16
GOY07_03105	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GOY07_03145	COG0839	Belongs to the complex I subunit 6 family
GOY07_03155	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GOY07_03160	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOY07_03165	COG1007	ATP synthesis coupled electron transport
GOY07_03170	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
GOY07_03170	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
GOY07_03175	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
GOY07_03185	COG0333	Belongs to the bacterial ribosomal protein bL32 family
GOY07_03190	COG0416	fatty acid biosynthetic process
GOY07_03195	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
GOY07_03205	COG0006	proline dipeptidase activity
GOY07_03210	COG0445	tRNA wobble uridine modification
GOY07_03230	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GOY07_03240	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GOY07_03245	COG0072	phenylalanine-tRNA ligase activity
GOY07_03245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOY07_03255	COG0356	it plays a direct role in the translocation of protons across the membrane
GOY07_03260	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
GOY07_03275	COG1612	heme a metabolic process
GOY07_03280	COG4770	biotin carboxylase activity
GOY07_03290	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GOY07_03310	COG2171	N-acyltransferase activity
GOY07_03315	COG1053	succinate dehydrogenase
GOY07_03325	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GOY07_03360	COG0629	single-stranded DNA binding
GOY07_03365	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GOY07_03375	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
GOY07_03380	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
GOY07_03385	COG0343	queuine tRNA-ribosyltransferase activity
GOY07_03390	COG0651	ATP synthesis coupled electron transport
GOY07_03410	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GOY07_03420	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
GOY07_03435	COG0321	lipoyl(octanoyl) transferase activity
GOY07_03445	COG0372	Belongs to the citrate synthase family
GOY07_03450	COG0268	Binds directly to 16S ribosomal RNA
GOY07_03460	COG4974	Belongs to the 'phage' integrase family
GOY07_03465	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GOY07_03470	COG0628	permease
GOY07_03495	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
GOY07_03510	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOY07_03525	COG3451	type IV secretory pathway VirB4
GOY07_03545	COG2070	2-Nitropropane dioxygenase
GOY07_03560	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GOY07_03565	COG0142	geranyltranstransferase activity
GOY07_03580	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
GOY07_03615	COG1121	(ABC) transporter
GOY07_03625	COG0105	UTP biosynthetic process
GOY07_03635	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
GOY07_03655	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
GOY07_03675	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GOY07_03675	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GOY07_03690	COG0539	negative regulation of cytoplasmic translation
GOY07_03695	COG0776	regulation of translation
GOY07_03710	COG0750	zinc metalloprotease
GOY07_03725	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GOY07_03730	COG0493	'glutamate synthase
GOY07_03730	COG0543	2 iron, 2 sulfur cluster binding
GOY07_03745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
GOY07_03750	COG0149	triose-phosphate isomerase activity
GOY07_03755	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
GOY07_03755	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GOY07_03770	COG0745	RESPONSE REGULATOR receiver
GOY07_03775	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
GOY07_03780	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
GOY07_03790	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
GOY07_03795	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
GOY07_03820	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GOY07_03830	COG0567	Dehydrogenase, E1 component
GOY07_03850	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GOY07_03850	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GOY07_03855	COG0232	Belongs to the dGTPase family. Type 2 subfamily
GOY07_03860	COG0316	Belongs to the HesB IscA family
GOY07_03875	COG2945	thiolester hydrolase activity
GOY07_03880	COG1104	cysteine desulfurase activity
GOY07_03900	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
GOY07_03915	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GOY07_03930	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
GOY07_03965	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
GOY07_03970	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOY07_03975	COG0037	tRNA processing
GOY07_03980	COG2885	chlorophyll binding
GOY07_04000	COG0482	sulfurtransferase activity
GOY07_04005	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
GOY07_04020	COG0494	nUDIX hydrolase
GOY07_04025	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
GOY07_04030	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
GOY07_04045	COG0275	rRNA processing
GOY07_04060	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
GOY07_04075	COG3088	subunit of a heme lyase
GOY07_04075	COG4235	cytochrome complex assembly
GOY07_04080	COG0114	fumarate hydratase activity