locus-tag class description MJ631_00005 PF04997 RNA polymerase Rpb1, domain 1 MJ631_00005 PF04560 RNA polymerase Rpb2, domain 7 MJ631_00005 PF10385 RNA polymerase beta subunit external 1 domain MJ631_00005 PF04565 RNA polymerase Rpb2, domain 3 MJ631_00005 PF04561 RNA polymerase Rpb2, domain 2 MJ631_00005 PF00562 RNA polymerase Rpb2, domain 6 MJ631_00005 PF04998 RNA polymerase Rpb1, domain 5 MJ631_00005 PF05000 RNA polymerase Rpb1, domain 4 MJ631_00005 PF04983 RNA polymerase Rpb1, domain 3 MJ631_00005 PF00623 RNA polymerase Rpb1, domain 2 MJ631_00005 PF04563 RNA polymerase beta subunit MJ631_00010 PF01207 Dihydrouridine synthase (Dus) MJ631_00020 PF02403 Seryl-tRNA synthetase N-terminal domain MJ631_00020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MJ631_00025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MJ631_00025 PF02843 Phosphoribosylglycinamide synthetase, C domain MJ631_00025 PF02844 Phosphoribosylglycinamide synthetase, N domain MJ631_00035 PF18324 Hypothetical protein TT1725 MJ631_00035 PF00180 Isocitrate/isopropylmalate dehydrogenase MJ631_00045 PF00633 Helix-hairpin-helix motif MJ631_00045 PF00730 HhH-GPD superfamily base excision DNA repair protein MJ631_00045 PF10576 Iron-sulfur binding domain of endonuclease III MJ631_00060 PF01808 AICARFT/IMPCHase bienzyme MJ631_00060 PF02142 MGS-like domain MJ631_00125 PF08245 Mur ligase middle domain MJ631_00130 PF00121 Triosephosphate isomerase MJ631_00140 PF00398 Ribosomal RNA adenine dimethylase MJ631_00145 PF00571 CBS domain MJ631_00145 PF00478 IMP dehydrogenase / GMP reductase domain MJ631_00150 PF07497 Rho termination factor, RNA-binding domain MJ631_00150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MJ631_00150 PF07498 Rho termination factor, N-terminal domain MJ631_00170 PF00886 Ribosomal protein S16 MJ631_00175 PF00348 Polyprenyl synthetase MJ631_00180 PF01025 GrpE MJ631_00185 PF00579 tRNA synthetases class I (W and Y) MJ631_00195 PF16078 2-oxoglutarate dehydrogenase N-terminus MJ631_00195 PF00676 Dehydrogenase E1 component MJ631_00195 PF16870 2-oxoglutarate dehydrogenase C-terminal MJ631_00195 PF02779 Transketolase, pyrimidine binding domain MJ631_00225 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MJ631_00230 PF13091 PLD-like domain MJ631_00240 PF01790 Prolipoprotein diacylglyceryl transferase MJ631_00245 PF01668 SmpB protein MJ631_00265 PF00551 Formyl transferase MJ631_00275 PF00675 Insulinase (Peptidase family M16) MJ631_00275 PF05193 Peptidase M16 inactive domain MJ631_00280 PF01252 Signal peptidase (SPase) II MJ631_00285 PF06574 FAD synthetase MJ631_00285 PF01687 Riboflavin kinase MJ631_00290 PF00462 Glutaredoxin MJ631_00300 PF03144 Elongation factor Tu domain 2 MJ631_00300 PF00009 Elongation factor Tu GTP binding domain MJ631_00300 PF06421 GTP-binding protein LepA C-terminus MJ631_00300 PF00679 Elongation factor G C-terminus MJ631_00300 PF14492 Elongation Factor G, domain II MJ631_00315 PF03471 Transporter associated domain MJ631_00315 PF03741 Integral membrane protein TerC family MJ631_00320 PF00117 Glutamine amidotransferase class-I MJ631_00320 PF00958 GMP synthase C terminal domain MJ631_00320 PF02540 NAD synthase MJ631_00325 PF00263 Bacterial type II and III secretion system protein MJ631_00325 PF03958 Bacterial type II/III secretion system short domain MJ631_00335 PF01578 Cytochrome C assembly protein MJ631_00340 PF03618 Kinase/pyrophosphorylase MJ631_00345 PF00444 Ribosomal protein L36 MJ631_00350 PF17191 RecG wedge domain MJ631_00350 PF00270 DEAD/DEAH box helicase MJ631_00350 PF00271 Helicase conserved C-terminal domain MJ631_00370 PF04055 Radical SAM superfamily MJ631_00370 PF00919 Uncharacterized protein family UPF0004 MJ631_00380 PF02355 Protein export membrane protein MJ631_00390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MJ631_00390 PF03900 Porphobilinogen deaminase, C-terminal domain MJ631_00395 PF01565 FAD binding domain MJ631_00395 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MJ631_00405 PF00375 Sodium:dicarboxylate symporter family MJ631_00410 PF00156 Phosphoribosyl transferase domain MJ631_00420 PF00533 BRCA1 C Terminus (BRCT) domain MJ631_00420 PF01653 NAD-dependent DNA ligase adenylation domain MJ631_00420 PF03120 NAD-dependent DNA ligase OB-fold domain MJ631_00420 PF12826 Helix-hairpin-helix motif MJ631_00475 PF01548 Transposase MJ631_00475 PF02371 Transposase IS116/IS110/IS902 family MJ631_00495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MJ631_00495 PF01348 Type II intron maturase MJ631_00505 PF08676 MutL C terminal dimerisation domain MJ631_00505 PF01119 DNA mismatch repair protein, C-terminal domain MJ631_00510 PF01381 Helix-turn-helix MJ631_00515 PF04002 RadC-like JAB domain MJ631_00535 PF01734 Patatin-like phospholipase MJ631_00540 PF00892 EamA-like transporter family MJ631_00595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MJ631_00605 PF01548 Transposase MJ631_00605 PF02371 Transposase IS116/IS110/IS902 family MJ631_00625 PF01555 DNA methylase MJ631_00645 PF01548 Transposase MJ631_00645 PF02371 Transposase IS116/IS110/IS902 family MJ631_00655 PF17761 DUF1016 N-terminal domain MJ631_00655 PF06250 YhcG PDDEXK nuclease domain MJ631_00750 PF01119 DNA mismatch repair protein, C-terminal domain MJ631_00750 PF08676 MutL C terminal dimerisation domain MJ631_00755 PF01381 Helix-turn-helix MJ631_00760 PF04002 RadC-like JAB domain MJ631_00765 PF00872 Transposase, Mutator family MJ631_00785 PF08671 Anti-repressor SinI MJ631_00785 PF01381 Helix-turn-helix MJ631_00795 PF01734 Patatin-like phospholipase MJ631_00840 PF17482 Phage tail sheath C-terminal domain MJ631_00840 PF04984 Phage tail sheath protein subtilisin-like domain MJ631_00920 PF01555 DNA methylase MJ631_00920 PF18755 Restriction Enzyme Adenine Methylase Associated MJ631_00930 PF12796 Ankyrin repeats (3 copies) MJ631_00945 PF17761 DUF1016 N-terminal domain MJ631_00945 PF06250 YhcG PDDEXK nuclease domain MJ631_01045 PF02810 SEC-C motif MJ631_01045 PF07517 SecA DEAD-like domain MJ631_01045 PF07516 SecA Wing and Scaffold domain MJ631_01045 PF01043 SecA preprotein cross-linking domain MJ631_01055 PF07516 SecA Wing and Scaffold domain MJ631_01055 PF01043 SecA preprotein cross-linking domain MJ631_01055 PF07517 SecA DEAD-like domain MJ631_01055 PF02810 SEC-C motif MJ631_01055 PF00271 Helicase conserved C-terminal domain MJ631_01080 PF04002 RadC-like JAB domain MJ631_01095 PF01734 Patatin-like phospholipase MJ631_01100 PF13091 PLD-like domain MJ631_01145 PF04984 Phage tail sheath protein subtilisin-like domain MJ631_01145 PF17482 Phage tail sheath C-terminal domain MJ631_01220 PF01555 DNA methylase MJ631_01290 PF06250 YhcG PDDEXK nuclease domain MJ631_01290 PF17761 DUF1016 N-terminal domain MJ631_01360 PF01348 Type II intron maturase MJ631_01360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MJ631_01375 PF04002 RadC-like JAB domain MJ631_01385 PF08671 Anti-repressor SinI MJ631_01385 PF01381 Helix-turn-helix MJ631_01395 PF01734 Patatin-like phospholipase MJ631_01440 PF17482 Phage tail sheath C-terminal domain MJ631_01440 PF04984 Phage tail sheath protein subtilisin-like domain MJ631_01470 PF11967 Recombination protein O N terminal MJ631_01470 PF02565 Recombination protein O C terminal MJ631_01475 PF00072 Response regulator receiver domain MJ631_01475 PF00990 Diguanylate cyclase, GGDEF domain MJ631_01485 PF05088 Bacterial NAD-glutamate dehydrogenase MJ631_01490 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_01490 PF17871 AAA lid domain MJ631_01490 PF02861 Clp amino terminal domain, pathogenicity island component MJ631_01490 PF10431 C-terminal, D2-small domain, of ClpB protein MJ631_01490 PF07724 AAA domain (Cdc48 subfamily) MJ631_01540 PF07517 SecA DEAD-like domain MJ631_01540 PF02810 SEC-C motif MJ631_01540 PF01043 SecA preprotein cross-linking domain MJ631_01540 PF07516 SecA Wing and Scaffold domain MJ631_01590 PF04002 RadC-like JAB domain MJ631_01770 PF02646 RmuC family MJ631_01775 PF07943 Penicillin-binding protein 5, C-terminal domain MJ631_01775 PF00768 D-alanyl-D-alanine carboxypeptidase MJ631_01780 PF04002 RadC-like JAB domain MJ631_01790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MJ631_01790 PF01578 Cytochrome C assembly protein MJ631_01800 PF01624 MutS domain I MJ631_01800 PF05188 MutS domain II MJ631_01800 PF05192 MutS domain III MJ631_01800 PF05190 MutS family domain IV MJ631_01800 PF00488 MutS domain V MJ631_01810 PF01336 OB-fold nucleic acid binding domain MJ631_01810 PF00152 tRNA synthetases class II (D, K and N) MJ631_01810 PF02938 GAD domain MJ631_01815 PF01183 Glycosyl hydrolases family 25 MJ631_01820 PF00083 Sugar (and other) transporter MJ631_01820 PF08946 Osmosensory transporter coiled coil MJ631_01825 PF00849 RNA pseudouridylate synthase MJ631_01825 PF01479 S4 domain MJ631_01855 PF07478 D-ala D-ala ligase C-terminus MJ631_01855 PF01820 D-ala D-ala ligase N-terminus MJ631_01870 PF11953 Domain of unknown function (DUF3470) MJ631_01870 PF00037 4Fe-4S binding domain MJ631_01875 PF02481 DNA recombination-mediator protein A MJ631_01875 PF17782 DprA winged helix domain MJ631_01900 PF00571 CBS domain MJ631_01900 PF03448 MgtE intracellular N domain MJ631_01900 PF01769 Divalent cation transporter MJ631_01930 PF01040 UbiA prenyltransferase family MJ631_01935 PF02033 Ribosome-binding factor A MJ631_01940 PF00009 Elongation factor Tu GTP binding domain MJ631_01940 PF11987 Translation-initiation factor 2 MJ631_01940 PF04760 Translation initiation factor IF-2, N-terminal region MJ631_01945 PF08529 NusA N-terminal domain MJ631_01945 PF13184 NusA-like KH domain MJ631_01945 PF00575 S1 RNA binding domain MJ631_01950 PF00873 AcrB/AcrD/AcrF family MJ631_01960 PF00120 Glutamine synthetase, catalytic domain MJ631_01965 PF00308 Bacterial dnaA protein MJ631_01965 PF08299 Bacterial dnaA protein helix-turn-helix MJ631_01965 PF11638 DnaA N-terminal domain MJ631_01970 PF07549 SecD/SecF GG Motif MJ631_01970 PF02355 Protein export membrane protein MJ631_01980 PF14849 YidC periplasmic domain MJ631_01980 PF02096 60Kd inner membrane protein MJ631_01985 PF00885 6,7-dimethyl-8-ribityllumazine synthase MJ631_01990 PF01029 NusB family MJ631_02000 PF00692 dUTPase MJ631_02030 PF01648 4'-phosphopantetheinyl transferase superfamily MJ631_02035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MJ631_02035 PF03129 Anticodon binding domain MJ631_02050 PF13288 DXP reductoisomerase C-terminal domain MJ631_02050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MJ631_02050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MJ631_02060 PF00005 ABC transporter MJ631_02065 PF05173 Dihydrodipicolinate reductase, C-terminus MJ631_02065 PF01113 Dihydrodipicolinate reductase, N-terminus MJ631_02105 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MJ631_02120 PF08264 Anticodon-binding domain of tRNA MJ631_02120 PF00133 tRNA synthetases class I (I, L, M and V) MJ631_02130 PF00115 Cytochrome C and Quinol oxidase polypeptide I MJ631_02145 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_02145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MJ631_02150 PF00589 Phage integrase family MJ631_02150 PF02899 Phage integrase, N-terminal SAM-like domain MJ631_02165 PF02637 GatB domain MJ631_02165 PF02934 GatB/GatE catalytic domain MJ631_02170 PF00676 Dehydrogenase E1 component MJ631_02175 PF03653 Uncharacterised protein family (UPF0093) MJ631_02180 PF00529 HlyD membrane-fusion protein of T1SS MJ631_02180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MJ631_02185 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MJ631_02185 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MJ631_02190 PF00115 Cytochrome C and Quinol oxidase polypeptide I MJ631_02195 PF01040 UbiA prenyltransferase family MJ631_02200 PF00075 RNase H MJ631_02210 PF09190 DALR domain MJ631_02210 PF01406 tRNA synthetases class I (C) catalytic domain MJ631_02215 PF06055 Exopolysaccharide synthesis, ExoD MJ631_02225 PF02416 mttA/Hcf106 family MJ631_02230 PF00005 ABC transporter MJ631_02245 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MJ631_02265 PF01926 50S ribosome-binding GTPase MJ631_02265 PF06071 Protein of unknown function (DUF933) MJ631_02300 PF00364 Biotin-requiring enzyme MJ631_02300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MJ631_02300 PF02817 e3 binding domain MJ631_02310 PF01255 Putative undecaprenyl diphosphate synthase MJ631_02325 PF01467 Cytidylyltransferase-like MJ631_02350 PF02325 YGGT family MJ631_02355 PF09397 Ftsk gamma domain MJ631_02355 PF17854 FtsK alpha domain MJ631_02355 PF01580 FtsK/SpoIIIE family MJ631_02355 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MJ631_02370 PF04551 GcpE protein MJ631_02375 PF00226 DnaJ domain MJ631_02375 PF00684 DnaJ central domain MJ631_02375 PF01556 DnaJ C terminal domain MJ631_02385 PF01258 Prokaryotic dksA/traR C4-type zinc finger MJ631_02400 PF00596 Class II Aldolase and Adducin N-terminal domain MJ631_02410 PF00814 Glycoprotease family MJ631_02420 PF08241 Methyltransferase domain MJ631_02425 PF13662 Toprim domain MJ631_02425 PF08275 DNA primase catalytic core, N-terminal domain MJ631_02425 PF01807 CHC2 zinc finger MJ631_02440 PF00111 2Fe-2S iron-sulfur cluster binding domain MJ631_02450 PF03918 Cytochrome C biogenesis protein MJ631_02455 PF13361 UvrD-like helicase C-terminal domain MJ631_02455 PF00580 UvrD/REP helicase N-terminal domain MJ631_02455 PF12705 PD-(D/E)XK nuclease superfamily MJ631_02460 PF08544 GHMP kinases C terminal MJ631_02460 PF00288 GHMP kinases N terminal domain MJ631_02470 PF00950 ABC 3 transport family MJ631_02495 PF00749 tRNA synthetases class I (E and Q), catalytic domain MJ631_02500 PF00679 Elongation factor G C-terminus MJ631_02500 PF00009 Elongation factor Tu GTP binding domain MJ631_02500 PF03144 Elongation factor Tu domain 2 MJ631_02510 PF13735 tRNA nucleotidyltransferase domain 2 putative MJ631_02510 PF01743 Poly A polymerase head domain MJ631_02510 PF12627 Probable RNA and SrmB- binding site of polymerase A MJ631_02540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MJ631_02540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MJ631_02545 PF00902 Sec-independent protein translocase protein (TatC) MJ631_02570 PF10417 C-terminal domain of 1-Cys peroxiredoxin MJ631_02570 PF00578 AhpC/TSA family MJ631_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_02585 PF03109 ABC1 family MJ631_02590 PF00005 ABC transporter MJ631_02595 PF01297 Zinc-uptake complex component A periplasmic MJ631_02605 PF00471 Ribosomal protein L33 MJ631_02610 PF00575 S1 RNA binding domain MJ631_02610 PF12111 Polyribonucleotide phosphorylase C terminal MJ631_02610 PF10150 Ribonuclease E/G family MJ631_02615 PF00012 Hsp70 protein MJ631_02620 PF01722 BolA-like protein MJ631_02625 PF01053 Cys/Met metabolism PLP-dependent enzyme MJ631_02630 PF02875 Mur ligase family, glutamate ligase domain MJ631_02630 PF08245 Mur ligase middle domain MJ631_02645 PF04002 RadC-like JAB domain MJ631_02710 PF18413 Neuraminidase-like domain MJ631_02710 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain MJ631_02730 PF05785 Rho-activating domain of cytotoxic necrotizing factor MJ631_02730 PF18807 Tripartite Tc toxins repeat MJ631_02740 PF03372 Endonuclease/Exonuclease/phosphatase family MJ631_02760 PF12255 Insecticide toxin TcdB middle/C-terminal region MJ631_02760 PF03534 Salmonella virulence plasmid 65kDa B protein MJ631_02760 PF12256 Insecticide toxin TcdB middle/N-terminal region MJ631_02775 PF01734 Patatin-like phospholipase MJ631_02840 PF01734 Patatin-like phospholipase MJ631_02850 PF01381 Helix-turn-helix MJ631_02850 PF08671 Anti-repressor SinI MJ631_02870 PF04002 RadC-like JAB domain MJ631_02880 PF01119 DNA mismatch repair protein, C-terminal domain MJ631_02880 PF08676 MutL C terminal dimerisation domain MJ631_02890 PF00132 Bacterial transferase hexapeptide (six repeats) MJ631_02890 PF14602 Hexapeptide repeat of succinyl-transferase MJ631_02890 PF12804 MobA-like NTP transferase domain MJ631_02895 PF16363 GDP-mannose 4,6 dehydratase MJ631_02915 PF00005 ABC transporter MJ631_02915 PF00664 ABC transporter transmembrane region MJ631_02920 PF01212 Beta-eliminating lyase MJ631_02925 PF01212 Beta-eliminating lyase MJ631_02935 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MJ631_02935 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MJ631_02935 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MJ631_02940 PF00892 EamA-like transporter family MJ631_02950 PF14572 Phosphoribosyl synthetase-associated domain MJ631_02950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MJ631_02955 PF02686 Glu-tRNAGln amidotransferase C subunit MJ631_02960 PF07676 WD40-like Beta Propeller Repeat MJ631_02965 PF12706 Beta-lactamase superfamily domain MJ631_02965 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MJ631_02965 PF17770 Ribonuclease J C-terminal domain MJ631_02970 PF00684 DnaJ central domain MJ631_02970 PF01556 DnaJ C terminal domain MJ631_02970 PF00226 DnaJ domain MJ631_02980 PF02769 AIR synthase related protein, C-terminal domain MJ631_02980 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MJ631_02980 PF00586 AIR synthase related protein, N-terminal domain MJ631_02985 PF12705 PD-(D/E)XK nuclease superfamily MJ631_02995 PF10415 Fumarase C C-terminus MJ631_02995 PF00206 Lyase MJ631_03030 PF00210 Ferritin-like domain MJ631_03035 PF02104 SURF1 family MJ631_03040 PF01225 Mur ligase family, catalytic domain MJ631_03040 PF02875 Mur ligase family, glutamate ligase domain MJ631_03040 PF08245 Mur ligase middle domain MJ631_03050 PF03952 Enolase, N-terminal domain MJ631_03050 PF00113 Enolase, C-terminal TIM barrel domain MJ631_03055 PF01926 50S ribosome-binding GTPase MJ631_03055 PF01018 GTP1/OBG MJ631_03075 PF01494 FAD binding domain MJ631_03085 PF03330 Lytic transglycolase MJ631_03090 PF01225 Mur ligase family, catalytic domain MJ631_03090 PF02875 Mur ligase family, glutamate ligase domain MJ631_03090 PF08245 Mur ligase middle domain MJ631_03105 PF07690 Major Facilitator Superfamily MJ631_03125 PF00472 RF-1 domain MJ631_03125 PF03462 PCRF domain MJ631_03130 PF01926 50S ribosome-binding GTPase MJ631_03135 PF00696 Amino acid kinase family MJ631_03145 PF00709 Adenylosuccinate synthetase MJ631_03165 PF01176 Translation initiation factor 1A / IF-1 MJ631_03170 PF02545 Maf-like protein MJ631_03190 PF01235 Sodium:alanine symporter family MJ631_03225 PF00118 TCP-1/cpn60 chaperonin family MJ631_03230 PF00166 Chaperonin 10 Kd subunit MJ631_03235 PF01571 Aminomethyltransferase folate-binding domain MJ631_03250 PF00268 Ribonucleotide reductase, small chain MJ631_03270 PF01348 Type II intron maturase MJ631_03270 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MJ631_03285 PF09334 tRNA synthetases class I (M) MJ631_03285 PF08264 Anticodon-binding domain of tRNA MJ631_03300 PF01121 Dephospho-CoA kinase MJ631_03305 PF00570 HRDC domain MJ631_03305 PF01612 3'-5' exonuclease MJ631_03310 PF01979 Amidohydrolase family MJ631_03315 PF01548 Transposase MJ631_03315 PF02371 Transposase IS116/IS110/IS902 family MJ631_03325 PF06271 RDD family MJ631_03335 PF00772 DnaB-like helicase N terminal domain MJ631_03335 PF03796 DnaB-like helicase C terminal domain MJ631_03340 PF00361 Proton-conducting membrane transporter MJ631_03340 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MJ631_03340 PF13244 Domain of unknown function (DUF4040) MJ631_03355 PF09115 DNA polymerase III, delta subunit, C terminal MJ631_03360 PF01300 Telomere recombination MJ631_03450 PF01548 Transposase MJ631_03450 PF02371 Transposase IS116/IS110/IS902 family MJ631_03525 PF00456 Transketolase, thiamine diphosphate binding domain MJ631_03525 PF02780 Transketolase, C-terminal domain MJ631_03525 PF02779 Transketolase, pyrimidine binding domain MJ631_03530 PF00163 Ribosomal protein S4/S9 N-terminal domain MJ631_03530 PF01479 S4 domain MJ631_03540 PF04384 Iron-sulphur cluster assembly MJ631_03550 PF00830 Ribosomal L28 family MJ631_03555 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MJ631_03555 PF04055 Radical SAM superfamily MJ631_03560 PF00929 Exonuclease MJ631_03605 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_03605 PF06480 FtsH Extracellular MJ631_03605 PF01434 Peptidase family M41 MJ631_03605 PF17862 AAA+ lid domain MJ631_03625 PF17755 UvrA DNA-binding domain MJ631_03625 PF17760 UvrA interaction domain MJ631_03635 PF00364 Biotin-requiring enzyme MJ631_03635 PF02780 Transketolase, C-terminal domain MJ631_03635 PF02779 Transketolase, pyrimidine binding domain MJ631_03645 PF10502 Signal peptidase, peptidase S26 MJ631_03650 PF00012 Hsp70 protein MJ631_03655 PF07743 HSCB C-terminal oligomerisation domain MJ631_03660 PF01521 Iron-sulphur cluster biosynthesis MJ631_03665 PF01592 NifU-like N terminal domain MJ631_03670 PF00448 SRP54-type protein, GTPase domain MJ631_03670 PF02881 SRP54-type protein, helical bundle domain MJ631_03675 PF18073 Rubredoxin metal binding domain MJ631_03680 PF07690 Major Facilitator Superfamily MJ631_03680 PF00083 Sugar (and other) transporter MJ631_03685 PF01131 DNA topoisomerase MJ631_03685 PF01751 Toprim domain MJ631_03685 PF13368 Topoisomerase C-terminal repeat MJ631_03685 PF01396 Topoisomerase DNA binding C4 zinc finger MJ631_03695 PF02534 Type IV secretory system Conjugative DNA transfer MJ631_03700 PF00437 Type II/IV secretion system protein MJ631_03715 PF04335 VirB8 protein MJ631_03720 PF00925 GTP cyclohydrolase II MJ631_03740 PF00692 dUTPase MJ631_03745 PF02386 Cation transport protein MJ631_03760 PF01765 Ribosome recycling factor MJ631_03765 PF00696 Amino acid kinase family MJ631_03770 PF00889 Elongation factor TS MJ631_03775 PF00318 Ribosomal protein S2 MJ631_03785 PF02699 Preprotein translocase subunit MJ631_03790 PF01380 SIS domain MJ631_03805 PF00132 Bacterial transferase hexapeptide (six repeats) MJ631_03805 PF00101 Ribulose bisphosphate carboxylase, small chain MJ631_03815 PF06418 CTP synthase N-terminus MJ631_03815 PF00117 Glutamine amidotransferase class-I MJ631_03830 PF14437 MafB19-like deaminase MJ631_03850 PF00005 ABC transporter MJ631_03855 PF03485 Arginyl tRNA synthetase N terminal domain MJ631_03855 PF05746 DALR anticodon binding domain MJ631_03855 PF00750 tRNA synthetases class I (R) MJ631_03870 PF00664 ABC transporter transmembrane region MJ631_03870 PF00005 ABC transporter MJ631_03875 PF01209 ubiE/COQ5 methyltransferase family MJ631_03880 PF07690 Major Facilitator Superfamily MJ631_03905 PF01551 Peptidase family M23 MJ631_03905 PF01476 LysM domain MJ631_03905 PF08525 Opacity-associated protein A N-terminal motif MJ631_03910 PF01709 Transcriptional regulator MJ631_03925 PF01066 CDP-alcohol phosphatidyltransferase MJ631_03930 PF00390 Malic enzyme, N-terminal domain MJ631_03930 PF03949 Malic enzyme, NAD binding domain MJ631_03930 PF01515 Phosphate acetyl/butaryl transferase MJ631_03945 PF00462 Glutaredoxin MJ631_03990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MJ631_03990 PF00391 PEP-utilising enzyme, mobile domain MJ631_03990 PF02896 PEP-utilising enzyme, TIM barrel domain MJ631_04020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MJ631_04020 PF00925 GTP cyclohydrolase II MJ631_04025 PF01272 Transcription elongation factor, GreA/GreB, C-term MJ631_04025 PF03449 Transcription elongation factor, N-terminal MJ631_04030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MJ631_04030 PF00306 ATP synthase alpha/beta chain, C terminal domain MJ631_04030 PF02874 ATP synthase alpha/beta family, beta-barrel domain MJ631_04035 PF00213 ATP synthase delta (OSCP) subunit MJ631_04040 PF02021 Uncharacterised protein family UPF0102 MJ631_04045 PF01196 Ribosomal protein L17 MJ631_04050 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MJ631_04050 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MJ631_04050 PF01000 RNA polymerase Rpb3/RpoA insert domain MJ631_04055 PF00411 Ribosomal protein S11 MJ631_04060 PF00416 Ribosomal protein S13/S18 MJ631_04070 PF00344 SecY translocase MJ631_04075 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MJ631_04080 PF00333 Ribosomal protein S5, N-terminal domain MJ631_04080 PF03719 Ribosomal protein S5, C-terminal domain MJ631_04085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MJ631_04090 PF00347 Ribosomal protein L6 MJ631_04095 PF00410 Ribosomal protein S8 MJ631_04100 PF00253 Ribosomal protein S14p/S29e MJ631_04105 PF00673 ribosomal L5P family C-terminus MJ631_04105 PF00281 Ribosomal protein L5 MJ631_04110 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MJ631_04115 PF00238 Ribosomal protein L14p/L23e MJ631_04120 PF00366 Ribosomal protein S17 MJ631_04125 PF00831 Ribosomal L29 protein MJ631_04130 PF00252 Ribosomal protein L16p/L10e MJ631_04135 PF07650 KH domain MJ631_04135 PF00189 Ribosomal protein S3, C-terminal domain MJ631_04140 PF00237 Ribosomal protein L22p/L17e MJ631_04145 PF00203 Ribosomal protein S19 MJ631_04150 PF00181 Ribosomal Proteins L2, RNA binding domain MJ631_04150 PF03947 Ribosomal Proteins L2, C-terminal domain MJ631_04155 PF00276 Ribosomal protein L23 MJ631_04160 PF00573 Ribosomal protein L4/L1 family MJ631_04165 PF00297 Ribosomal protein L3 MJ631_04170 PF00338 Ribosomal protein S10p/S20e MJ631_04175 PF03143 Elongation factor Tu C-terminal domain MJ631_04175 PF03144 Elongation factor Tu domain 2 MJ631_04175 PF00009 Elongation factor Tu GTP binding domain MJ631_04190 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MJ631_04190 PF00117 Glutamine amidotransferase class-I MJ631_04195 PF00106 short chain dehydrogenase MJ631_04205 PF00923 Transaldolase/Fructose-6-phosphate aldolase MJ631_04215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MJ631_04220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MJ631_04220 PF02874 ATP synthase alpha/beta family, beta-barrel domain MJ631_04225 PF00528 Binding-protein-dependent transport system inner membrane component MJ631_04230 PF00468 Ribosomal protein L34 MJ631_04235 PF00825 Ribonuclease P MJ631_04260 PF13847 Methyltransferase domain MJ631_04265 PF03477 ATP cone domain MJ631_04265 PF02867 Ribonucleotide reductase, barrel domain MJ631_04265 PF00317 Ribonucleotide reductase, all-alpha domain MJ631_04270 PF03652 Holliday junction resolvase MJ631_04275 PF02075 Crossover junction endodeoxyribonuclease RuvC MJ631_04280 PF00510 Cytochrome c oxidase subunit III MJ631_04290 PF03070 TENA/THI-4/PQQC family MJ631_04295 PF02772 S-adenosylmethionine synthetase, central domain MJ631_04295 PF02773 S-adenosylmethionine synthetase, C-terminal domain MJ631_04295 PF00438 S-adenosylmethionine synthetase, N-terminal domain MJ631_04305 PF01016 Ribosomal L27 protein MJ631_04310 PF00829 Ribosomal prokaryotic L21 protein MJ631_04330 PF00132 Bacterial transferase hexapeptide (six repeats) MJ631_04330 PF14602 Hexapeptide repeat of succinyl-transferase MJ631_04330 PF12804 MobA-like NTP transferase domain MJ631_04335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MJ631_04335 PF01409 tRNA synthetases class II core domain (F) MJ631_04345 PF00677 Lumazine binding domain MJ631_04355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MJ631_04355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MJ631_04355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MJ631_04355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MJ631_04400 PF01367 5'-3' exonuclease, C-terminal SAM fold MJ631_04400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MJ631_04400 PF00476 DNA polymerase family A MJ631_04405 PF01425 Amidase MJ631_04410 PF00204 DNA gyrase B MJ631_04410 PF00986 DNA gyrase B subunit, carboxyl terminus MJ631_04410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MJ631_04410 PF01751 Toprim domain MJ631_04425 PF02666 Phosphatidylserine decarboxylase MJ631_04430 PF01066 CDP-alcohol phosphatidyltransferase MJ631_04435 PF01235 Sodium:alanine symporter family MJ631_04440 PF01235 Sodium:alanine symporter family MJ631_04445 PF02660 Glycerol-3-phosphate acyltransferase MJ631_04460 PF01545 Cation efflux family MJ631_04480 PF00588 SpoU rRNA Methylase family MJ631_04480 PF08032 RNA 2'-O ribose methyltransferase substrate binding MJ631_04490 PF01541 GIY-YIG catalytic domain MJ631_04490 PF02151 UvrB/uvrC motif MJ631_04490 PF08459 UvrC Helix-hairpin-helix N-terminal MJ631_04495 PF05746 DALR anticodon binding domain MJ631_04495 PF02092 Glycyl-tRNA synthetase beta subunit MJ631_04500 PF02091 Glycyl-tRNA synthetase alpha subunit MJ631_04550 PF00490 Delta-aminolevulinic acid dehydratase MJ631_04555 PF00146 NADH dehydrogenase MJ631_04560 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MJ631_04560 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MJ631_04560 PF00384 Molybdopterin oxidoreductase MJ631_04570 PF00883 Cytosol aminopeptidase family, catalytic domain MJ631_04570 PF02789 Cytosol aminopeptidase family, N-terminal domain MJ631_04580 PF00171 Aldehyde dehydrogenase family MJ631_04580 PF01619 Proline dehydrogenase MJ631_04580 PF14850 DNA-binding domain of Proline dehydrogenase MJ631_04580 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MJ631_04585 PF00694 Aconitase C-terminal domain MJ631_04585 PF00330 Aconitase family (aconitate hydratase) MJ631_04590 PF02556 Preprotein translocase subunit SecB MJ631_04600 PF00929 Exonuclease MJ631_04605 PF02630 SCO1/SenC MJ631_04610 PF00035 Double-stranded RNA binding motif MJ631_04610 PF14622 Ribonuclease-III-like MJ631_04615 PF01180 Dihydroorotate dehydrogenase MJ631_04630 PF01791 DeoC/LacD family aldolase MJ631_04640 PF07724 AAA domain (Cdc48 subfamily) MJ631_04640 PF17871 AAA lid domain MJ631_04640 PF10431 C-terminal, D2-small domain, of ClpB protein MJ631_04640 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_04640 PF02861 Clp amino terminal domain, pathogenicity island component MJ631_04645 PF00270 DEAD/DEAH box helicase MJ631_04645 PF00271 Helicase conserved C-terminal domain MJ631_04650 PF00313 'Cold-shock' DNA-binding domain MJ631_04655 PF01523 Putative modulator of DNA gyrase MJ631_04660 PF00231 ATP synthase MJ631_04675 PF02687 FtsX-like permease family MJ631_04675 PF12704 MacB-like periplasmic core domain MJ631_04680 PF01050 Mannose-6-phosphate isomerase MJ631_04680 PF00483 Nucleotidyl transferase MJ631_04690 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MJ631_04695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MJ631_04715 PF04546 Sigma-70, non-essential region MJ631_04715 PF03979 Sigma-70 factor, region 1.1 MJ631_04715 PF00140 Sigma-70 factor, region 1.2 MJ631_04715 PF04542 Sigma-70 region 2 MJ631_04715 PF04539 Sigma-70 region 3 MJ631_04715 PF04545 Sigma-70, region 4 MJ631_04720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MJ631_04730 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MJ631_04730 PF13244 Domain of unknown function (DUF4040) MJ631_04730 PF00361 Proton-conducting membrane transporter MJ631_04740 PF03334 Na+/H+ antiporter subunit MJ631_04750 PF01192 RNA polymerase Rpb6 MJ631_04760 PF00731 AIR carboxylase MJ631_04765 PF01119 DNA mismatch repair protein, C-terminal domain MJ631_04765 PF08676 MutL C terminal dimerisation domain MJ631_04770 PF01145 SPFH domain / Band 7 family MJ631_04775 PF01145 SPFH domain / Band 7 family MJ631_04780 PF13180 PDZ domain MJ631_04810 PF02390 Putative methyltransferase MJ631_04815 PF00575 S1 RNA binding domain MJ631_04820 PF00216 Bacterial DNA-binding protein MJ631_04835 PF17820 PDZ domain MJ631_04835 PF02163 Peptidase family M50 MJ631_04840 PF07244 Surface antigen variable number repeat MJ631_04840 PF01103 Surface antigen MJ631_04850 PF07977 FabA-like domain MJ631_04855 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_04865 PF02978 Signal peptide binding domain MJ631_04865 PF00448 SRP54-type protein, GTPase domain MJ631_04865 PF02881 SRP54-type protein, helical bundle domain MJ631_04870 PF00005 ABC transporter MJ631_04870 PF08402 TOBE domain MJ631_04875 PF02405 Permease MlaE MJ631_04880 PF01783 Ribosomal L32p protein family MJ631_04885 PF02504 Fatty acid synthesis protein MJ631_04890 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MJ631_04890 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MJ631_04900 PF01370 NAD dependent epimerase/dehydratase family MJ631_04900 PF08338 Domain of unknown function (DUF1731) MJ631_04905 PF02875 Mur ligase family, glutamate ligase domain MJ631_04905 PF08245 Mur ligase middle domain MJ631_04905 PF01225 Mur ligase family, catalytic domain MJ631_04925 PF01230 HIT domain MJ631_04930 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MJ631_04935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MJ631_04940 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MJ631_04945 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MJ631_04945 PF00056 lactate/malate dehydrogenase, NAD binding domain MJ631_04950 PF01026 TatD related DNase MJ631_04955 PF00293 NUDIX domain MJ631_04970 PF00579 tRNA synthetases class I (W and Y) MJ631_05015 PF12169 DNA polymerase III subunits gamma and tau domain III MJ631_05020 PF02575 YbaB/EbfC DNA-binding family MJ631_05025 PF13505 Outer membrane protein beta-barrel domain MJ631_05030 PF00140 Sigma-70 factor, region 1.2 MJ631_05030 PF04542 Sigma-70 region 2 MJ631_05030 PF04545 Sigma-70, region 4 MJ631_05040 PF02767 DNA polymerase III beta subunit, central domain MJ631_05040 PF02768 DNA polymerase III beta subunit, C-terminal domain MJ631_05040 PF00712 DNA polymerase III beta subunit, N-terminal domain MJ631_05045 PF01416 tRNA pseudouridine synthase MJ631_05050 PF00154 recA bacterial DNA recombination protein MJ631_05055 PF01195 Peptidyl-tRNA hydrolase MJ631_05060 PF01386 Ribosomal L25p family MJ631_05060 PF14693 Ribosomal protein TL5, C-terminal domain MJ631_05070 PF01795 MraW methylase family MJ631_05075 PF01548 Transposase MJ631_05075 PF02371 Transposase IS116/IS110/IS902 family MJ631_05080 PF00083 Sugar (and other) transporter MJ631_05085 PF00557 Metallopeptidase family M24 MJ631_05090 PF02491 SHS2 domain inserted in FTSA MJ631_05095 PF01327 Polypeptide deformylase MJ631_05100 PF03167 Uracil DNA glycosylase superfamily MJ631_05105 PF03232 Ubiquinone biosynthesis protein COQ7 MJ631_05115 PF01548 Transposase MJ631_05115 PF02371 Transposase IS116/IS110/IS902 family MJ631_05125 PF13537 Glutamine amidotransferase domain MJ631_05125 PF00156 Phosphoribosyl transferase domain MJ631_05240 PF01555 DNA methylase MJ631_05240 PF18755 Restriction Enzyme Adenine Methylase Associated MJ631_05310 PF17482 Phage tail sheath C-terminal domain MJ631_05310 PF04984 Phage tail sheath protein subtilisin-like domain MJ631_05375 PF01734 Patatin-like phospholipase MJ631_05385 PF08671 Anti-repressor SinI MJ631_05385 PF01381 Helix-turn-helix MJ631_05395 PF04002 RadC-like JAB domain MJ631_05405 PF01119 DNA mismatch repair protein, C-terminal domain MJ631_05405 PF08676 MutL C terminal dimerisation domain MJ631_05415 PF02810 SEC-C motif MJ631_05415 PF00271 Helicase conserved C-terminal domain MJ631_05415 PF01043 SecA preprotein cross-linking domain MJ631_05415 PF07516 SecA Wing and Scaffold domain MJ631_05415 PF07517 SecA DEAD-like domain MJ631_05430 PF03631 Virulence factor BrkB MJ631_05440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MJ631_05440 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MJ631_05440 PF02142 MGS-like domain MJ631_05450 PF01219 Prokaryotic diacylglycerol kinase MJ631_05455 PF00849 RNA pseudouridylate synthase MJ631_05475 PF03772 Competence protein MJ631_05475 PF00753 Metallo-beta-lactamase superfamily MJ631_05485 PF02223 Thymidylate kinase MJ631_05495 PF00999 Sodium/hydrogen exchanger family MJ631_05495 PF02254 TrkA-N domain MJ631_05500 PF13840 ACT domain MJ631_05500 PF01842 ACT domain MJ631_05500 PF00696 Amino acid kinase family MJ631_05505 PF02463 RecF/RecN/SMC N terminal domain MJ631_05510 PF00578 AhpC/TSA family MJ631_05515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MJ631_05515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MJ631_05520 PF04101 Glycosyltransferase family 28 C-terminal domain MJ631_05520 PF03033 Glycosyltransferase family 28 N-terminal domain MJ631_05530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MJ631_05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_05560 PF01926 50S ribosome-binding GTPase MJ631_05560 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MJ631_05575 PF01039 Carboxyl transferase domain MJ631_05605 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MJ631_05605 PF06827 Zinc finger found in FPG and IleRS MJ631_05605 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MJ631_05610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MJ631_05610 PF01243 Pyridoxamine 5'-phosphate oxidase MJ631_05620 PF00528 Binding-protein-dependent transport system inner membrane component MJ631_05630 PF01746 tRNA (Guanine-1)-methyltransferase MJ631_05635 PF01259 SAICAR synthetase MJ631_05640 PF00586 AIR synthase related protein, N-terminal domain MJ631_05640 PF02769 AIR synthase related protein, C-terminal domain MJ631_05660 PF01351 Ribonuclease HII MJ631_05665 PF00953 Glycosyl transferase family 4 MJ631_05675 PF02245 Methylpurine-DNA glycosylase (MPG) MJ631_05685 PF10609 NUBPL iron-transfer P-loop NTPase MJ631_05710 PF13462 Thioredoxin MJ631_05715 PF03364 Polyketide cyclase / dehydrase and lipid transport MJ631_05730 PF02875 Mur ligase family, glutamate ligase domain MJ631_05730 PF08245 Mur ligase middle domain MJ631_05750 PF01523 Putative modulator of DNA gyrase MJ631_05760 PF00355 Rieske [2Fe-2S] domain MJ631_05760 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MJ631_05765 PF03989 DNA gyrase C-terminal domain, beta-propeller MJ631_05765 PF00521 DNA gyrase/topoisomerase IV, subunit A MJ631_05785 PF02632 BioY family MJ631_05800 PF01678 Diaminopimelate epimerase MJ631_05805 PF02629 CoA binding domain MJ631_05805 PF00549 CoA-ligase MJ631_05810 PF08442 ATP-grasp domain MJ631_05810 PF00549 CoA-ligase MJ631_05855 PF01218 Coproporphyrinogen III oxidase MJ631_05860 PF00512 His Kinase A (phospho-acceptor) domain MJ631_05860 PF13188 PAS domain MJ631_05860 PF00072 Response regulator receiver domain MJ631_05860 PF08448 PAS fold MJ631_05860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MJ631_05865 PF13614 AAA domain MJ631_05870 PF17762 HTH domain found in ParB protein MJ631_05870 PF02195 ParB-like nuclease domain MJ631_05875 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MJ631_05875 PF02542 YgbB family MJ631_05890 PF01594 AI-2E family transporter MJ631_05900 PF01348 Type II intron maturase MJ631_05900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MJ631_05915 PF02899 Phage integrase, N-terminal SAM-like domain MJ631_05915 PF00589 Phage integrase family MJ631_05925 PF01649 Ribosomal protein S20 MJ631_05930 PF00285 Citrate synthase, C-terminal domain MJ631_05950 PF17864 RuvB AAA lid domain MJ631_05950 PF05491 RuvB C-terminal winged helix domain MJ631_05950 PF05496 Holliday junction DNA helicase RuvB P-loop domain MJ631_05955 PF07499 RuvA, C-terminal domain MJ631_05955 PF01330 RuvA N terminal domain MJ631_05960 PF00034 Cytochrome c MJ631_05970 PF13361 UvrD-like helicase C-terminal domain MJ631_05970 PF00580 UvrD/REP helicase N-terminal domain MJ631_05980 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MJ631_05985 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MJ631_05990 PF00361 Proton-conducting membrane transporter MJ631_05990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MJ631_05995 PF00361 Proton-conducting membrane transporter MJ631_06000 PF00361 Proton-conducting membrane transporter MJ631_06010 PF08279 HTH domain MJ631_06010 PF03099 Biotin/lipoate A/B protein ligase family MJ631_06010 PF02237 Biotin protein ligase C terminal domain MJ631_06015 PF03100 CcmE MJ631_06045 PF10531 SLBB domain MJ631_06045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MJ631_06045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MJ631_06050 PF05198 Translation initiation factor IF-3, N-terminal domain MJ631_06050 PF00707 Translation initiation factor IF-3, C-terminal domain MJ631_06055 PF03129 Anticodon binding domain MJ631_06055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MJ631_06055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MJ631_06060 PF12838 4Fe-4S dicluster domain MJ631_06065 PF10396 GTP-binding protein TrmE N-terminus MJ631_06065 PF12631 MnmE helical domain MJ631_06065 PF01926 50S ribosome-binding GTPase MJ631_06075 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_06090 PF00266 Aminotransferase class-V MJ631_06095 PF01098 Cell cycle protein MJ631_06100 PF00361 Proton-conducting membrane transporter MJ631_06135 PF03471 Transporter associated domain MJ631_06135 PF00571 CBS domain MJ631_06150 PF01208 Uroporphyrinogen decarboxylase (URO-D) MJ631_06155 PF00155 Aminotransferase class I and II MJ631_06160 PF00893 Small Multidrug Resistance protein MJ631_06175 PF00464 Serine hydroxymethyltransferase MJ631_06180 PF00162 Phosphoglycerate kinase MJ631_06195 PF00834 Ribulose-phosphate 3 epimerase family MJ631_06200 PF00013 KH domain MJ631_06200 PF01138 3' exoribonuclease family, domain 1 MJ631_06200 PF03725 3' exoribonuclease family, domain 2 MJ631_06200 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MJ631_06200 PF00575 S1 RNA binding domain MJ631_06205 PF00312 Ribosomal protein S15 MJ631_06210 PF01509 TruB family pseudouridylate synthase (N terminal domain) MJ631_06210 PF16198 tRNA pseudouridylate synthase B C-terminal domain MJ631_06220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MJ631_06220 PF01872 RibD C-terminal domain MJ631_06225 PF13286 Phosphohydrolase-associated domain MJ631_06225 PF01966 HD domain MJ631_06230 PF01521 Iron-sulphur cluster biosynthesis MJ631_06235 PF00005 ABC transporter MJ631_06240 PF02129 X-Pro dipeptidyl-peptidase (S15 family) MJ631_06245 PF00266 Aminotransferase class-V MJ631_06250 PF01027 Inhibitor of apoptosis-promoting Bax1 MJ631_06255 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 MJ631_06265 PF00107 Zinc-binding dehydrogenase MJ631_06265 PF08240 Alcohol dehydrogenase GroES-like domain MJ631_06275 PF00701 Dihydrodipicolinate synthetase family MJ631_06280 PF00436 Single-strand binding protein family MJ631_06305 PF02401 LytB protein MJ631_06330 PF07992 Pyridine nucleotide-disulphide oxidoreductase MJ631_06335 PF09312 SurA N-terminal domain MJ631_06345 PF00719 Inorganic pyrophosphatase MJ631_06375 PF01702 Queuine tRNA-ribosyltransferase MJ631_06385 PF00675 Insulinase (Peptidase family M16) MJ631_06385 PF05193 Peptidase M16 inactive domain MJ631_06390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MJ631_06390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MJ631_06415 PF04610 TrbL/VirB6 plasmid conjugal transfer protein MJ631_06420 PF04610 TrbL/VirB6 plasmid conjugal transfer protein MJ631_06425 PF04610 TrbL/VirB6 plasmid conjugal transfer protein MJ631_06430 PF04610 TrbL/VirB6 plasmid conjugal transfer protein MJ631_06435 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MJ631_06445 PF01921 tRNA synthetases class I (K) MJ631_06455 PF01728 FtsJ-like methyltransferase MJ631_06460 PF10691 Protein of unknown function (DUF2497) MJ631_06465 PF02321 Outer membrane efflux protein MJ631_06470 PF00572 Ribosomal protein L13 MJ631_06475 PF00380 Ribosomal protein S9/S16 MJ631_06485 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MJ631_06495 PF00011 Hsp20/alpha crystallin family MJ631_06500 PF00749 tRNA synthetases class I (E and Q), catalytic domain MJ631_06510 PF18140 Propionyl-coenzyme A carboxylase BT domain MJ631_06510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MJ631_06510 PF00364 Biotin-requiring enzyme MJ631_06510 PF00289 Biotin carboxylase, N-terminal domain MJ631_06510 PF02785 Biotin carboxylase C-terminal domain MJ631_06515 PF02628 Cytochrome oxidase assembly protein MJ631_06535 PF00137 ATP synthase subunit C MJ631_06540 PF00119 ATP synthase A chain MJ631_06550 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MJ631_06550 PF01588 Putative tRNA binding domain MJ631_06550 PF03147 Ferredoxin-fold anticodon binding domain MJ631_06550 PF03484 tRNA synthetase B5 domain MJ631_06550 PF03483 B3/4 domain MJ631_06560 PF00133 tRNA synthetases class I (I, L, M and V) MJ631_06560 PF08264 Anticodon-binding domain of tRNA MJ631_06570 PF04055 Radical SAM superfamily MJ631_06570 PF01938 TRAM domain MJ631_06570 PF00919 Uncharacterized protein family UPF0004 MJ631_06575 PF01368 DHH family MJ631_06575 PF02272 DHHA1 domain MJ631_06575 PF17768 RecJ OB domain MJ631_06580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MJ631_06590 PF03060 Nitronate monooxygenase MJ631_06605 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MJ631_06620 PF12796 Ankyrin repeats (3 copies) MJ631_06640 PF00557 Metallopeptidase family M24 MJ631_06640 PF01321 Creatinase/Prolidase N-terminal domain MJ631_06645 PF13932 GidA associated domain MJ631_06645 PF01134 Glucose inhibited division protein A MJ631_06660 PF03023 Lipid II flippase MurJ MJ631_06685 PF04860 Phage portal protein MJ631_06690 PF03099 Biotin/lipoate A/B protein ligase family MJ631_06695 PF02016 LD-carboxypeptidase N-terminal domain MJ631_06695 PF17676 LD-carboxypeptidase C-terminal domain MJ631_06725 PF00206 Lyase MJ631_06725 PF10397 Adenylosuccinate lyase C-terminus MJ631_06730 PF01281 Ribosomal protein L9, N-terminal domain MJ631_06730 PF03948 Ribosomal protein L9, C-terminal domain MJ631_06735 PF01084 Ribosomal protein S18 MJ631_06740 PF01250 Ribosomal protein S6 MJ631_06745 PF02811 PHP domain MJ631_06745 PF14579 Helix-hairpin-helix motif MJ631_06745 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MJ631_06745 PF07733 Bacterial DNA polymerase III alpha NTPase domain MJ631_06760 PF00551 Formyl transferase MJ631_06760 PF02911 Formyl transferase, C-terminal domain MJ631_06765 PF00453 Ribosomal protein L20 MJ631_06770 PF01632 Ribosomal protein L35 MJ631_06790 PF01411 tRNA synthetases class II (A) MJ631_06790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MJ631_06790 PF02272 DHHA1 domain MJ631_06805 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MJ631_06805 PF01676 Metalloenzyme superfamily MJ631_06815 PF00698 Acyl transferase domain MJ631_06820 PF01197 Ribosomal protein L31 MJ631_06825 PF01513 ATP-NAD kinase MJ631_06835 PF13416 Bacterial extracellular solute-binding protein MJ631_06840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MJ631_06840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MJ631_06855 PF00625 Guanylate kinase MJ631_06865 PF00890 FAD binding domain MJ631_06865 PF02910 Fumarate reductase flavoprotein C-term MJ631_06875 PF00132 Bacterial transferase hexapeptide (six repeats) MJ631_06875 PF14602 Hexapeptide repeat of succinyl-transferase MJ631_06875 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MJ631_06905 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_06905 PF17862 AAA+ lid domain MJ631_06905 PF06480 FtsH Extracellular MJ631_06905 PF01434 Peptidase family M41 MJ631_06920 PF01546 Peptidase family M20/M25/M40 MJ631_06920 PF07687 Peptidase dimerisation domain MJ631_06925 PF13685 Iron-containing alcohol dehydrogenase MJ631_06940 PF00186 Dihydrofolate reductase MJ631_06945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MJ631_06945 PF00809 Pterin binding enzyme MJ631_06950 PF02152 Dihydroneopterin aldolase MJ631_06955 PF03070 TENA/THI-4/PQQC family MJ631_06970 PF00085 Thioredoxin MJ631_06990 PF07650 KH domain MJ631_06990 PF01926 50S ribosome-binding GTPase MJ631_07040 PF00581 Rhodanese-like domain MJ631_07040 PF17773 UPF0176 acylphosphatase like domain MJ631_07045 PF00528 Binding-protein-dependent transport system inner membrane component MJ631_07050 PF04379 ApaG domain MJ631_07055 PF02222 ATP-grasp domain MJ631_07055 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MJ631_07060 PF01118 Semialdehyde dehydrogenase, NAD binding domain MJ631_07060 PF02774 Semialdehyde dehydrogenase, dimerisation domain MJ631_07070 PF00324 Amino acid permease MJ631_07075 PF13520 Amino acid permease MJ631_07085 PF01975 Survival protein SurE MJ631_07090 PF13393 Histidyl-tRNA synthetase MJ631_07090 PF03129 Anticodon binding domain MJ631_07100 PF00684 DnaJ central domain MJ631_07100 PF00226 DnaJ domain MJ631_07100 PF01556 DnaJ C terminal domain MJ631_07130 PF01078 Magnesium chelatase, subunit ChlI MJ631_07130 PF13335 Magnesium chelatase, subunit ChlI C-terminal MJ631_07140 PF12327 FtsZ family, C-terminal domain MJ631_07140 PF00091 Tubulin/FtsZ family, GTPase domain MJ631_07150 PF02130 Uncharacterized protein family UPF0054 MJ631_07155 PF13085 2Fe-2S iron-sulfur cluster binding domain MJ631_07170 PF04608 Phosphatidylglycerophosphatase A MJ631_07175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MJ631_07175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MJ631_07180 PF00072 Response regulator receiver domain MJ631_07180 PF00486 Transcriptional regulatory protein, C terminal MJ631_07210 PF00691 OmpA family MJ631_07215 PF01171 PP-loop family MJ631_07230 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_07230 PF17862 AAA+ lid domain MJ631_07230 PF06480 FtsH Extracellular MJ631_07230 PF01434 Peptidase family M41 MJ631_07235 PF06480 FtsH Extracellular MJ631_07235 PF01434 Peptidase family M41 MJ631_07235 PF17862 AAA+ lid domain MJ631_07235 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_07250 PF02817 e3 binding domain MJ631_07250 PF00364 Biotin-requiring enzyme MJ631_07250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MJ631_07260 PF01548 Transposase MJ631_07260 PF02371 Transposase IS116/IS110/IS902 family MJ631_07270 PF00005 ABC transporter MJ631_07270 PF00664 ABC transporter transmembrane region MJ631_07280 PF01548 Transposase MJ631_07280 PF02371 Transposase IS116/IS110/IS902 family MJ631_07290 PF00814 Glycoprotease family MJ631_07300 PF00989 PAS fold MJ631_07300 PF00512 His Kinase A (phospho-acceptor) domain MJ631_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MJ631_07300 PF13426 PAS domain MJ631_07300 PF13188 PAS domain MJ631_07305 PF00202 Aminotransferase class-III MJ631_07315 PF01782 RimM N-terminal domain MJ631_07315 PF05239 PRC-barrel domain MJ631_07320 PF08207 Elongation factor P (EF-P) KOW-like domain MJ631_07320 PF09285 Elongation factor P, C-terminal MJ631_07320 PF01132 Elongation factor P (EF-P) OB domain MJ631_07330 PF00155 Aminotransferase class I and II MJ631_07360 PF00183 Hsp90 protein MJ631_07370 PF02132 RecR protein MJ631_07370 PF13662 Toprim domain MJ631_07385 PF00270 DEAD/DEAH box helicase MJ631_07385 PF17764 3′ DNA-binding domain (3′BD) MJ631_07385 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MJ631_07385 PF18074 Primosomal protein N C-terminal domain MJ631_07415 PF02511 Thymidylate synthase complementing protein MJ631_07420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MJ631_07425 PF00109 Beta-ketoacyl synthase, N-terminal domain MJ631_07425 PF02801 Beta-ketoacyl synthase, C-terminal domain MJ631_07430 PF00550 Phosphopantetheine attachment site MJ631_07435 PF00348 Polyprenyl synthetase MJ631_07445 PF07724 AAA domain (Cdc48 subfamily) MJ631_07445 PF10431 C-terminal, D2-small domain, of ClpB protein MJ631_07445 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_07450 PF00227 Proteasome subunit MJ631_07465 PF00762 Ferrochelatase MJ631_07475 PF00334 Nucleoside diphosphate kinase MJ631_07480 PF00202 Aminotransferase class-III MJ631_07485 PF03471 Transporter associated domain MJ631_07485 PF00571 CBS domain MJ631_07485 PF01595 Cyclin M transmembrane N-terminal domain MJ631_07490 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) MJ631_07495 PF02441 Flavoprotein MJ631_07500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MJ631_07500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MJ631_07515 PF09334 tRNA synthetases class I (M) MJ631_07515 PF13603 Leucyl-tRNA synthetase, Domain 2 MJ631_07515 PF00133 tRNA synthetases class I (I, L, M and V) MJ631_07515 PF08264 Anticodon-binding domain of tRNA MJ631_07520 PF01551 Peptidase family M23 MJ631_07525 PF13411 MerR HTH family regulatory protein MJ631_07530 PF00216 Bacterial DNA-binding protein MJ631_07540 PF02151 UvrB/uvrC motif MJ631_07540 PF12344 Ultra-violet resistance protein B MJ631_07540 PF17757 UvrB interaction domain MJ631_07540 PF00271 Helicase conserved C-terminal domain MJ631_07540 PF04851 Type III restriction enzyme, res subunit MJ631_07545 PF00032 Cytochrome b(C-terminal)/b6/petD MJ631_07545 PF02167 Cytochrome C1 family MJ631_07545 PF00033 Cytochrome b/b6/petB MJ631_07550 PF00032 Cytochrome b(C-terminal)/b6/petD MJ631_07550 PF00033 Cytochrome b/b6/petB MJ631_07730 PF04984 Phage tail sheath protein subtilisin-like domain MJ631_07730 PF17482 Phage tail sheath C-terminal domain MJ631_07795 PF01734 Patatin-like phospholipase MJ631_07800 PF12256 Insecticide toxin TcdB middle/N-terminal region MJ631_07800 PF12255 Insecticide toxin TcdB middle/C-terminal region MJ631_07800 PF03534 Salmonella virulence plasmid 65kDa B protein MJ631_07810 PF18413 Neuraminidase-like domain MJ631_07810 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain MJ631_07830 PF04002 RadC-like JAB domain MJ631_07835 PF01522 Polysaccharide deacetylase MJ631_07840 PF03717 Penicillin-binding Protein dimerisation domain MJ631_07840 PF00905 Penicillin binding protein transpeptidase domain MJ631_07845 PF05362 Lon protease (S16) C-terminal proteolytic domain MJ631_07845 PF00004 ATPase family associated with various cellular activities (AAA) MJ631_07845 PF02190 ATP-dependent protease La (LON) substrate-binding domain MJ631_07850 PF06689 ClpX C4-type zinc finger MJ631_07850 PF10431 C-terminal, D2-small domain, of ClpB protein MJ631_07850 PF07724 AAA domain (Cdc48 subfamily) MJ631_07855 PF00574 Clp protease MJ631_07860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MJ631_07860 PF05698 Bacterial trigger factor protein (TF) C-terminus MJ631_07860 PF05697 Bacterial trigger factor protein (TF) MJ631_07870 PF04972 BON domain MJ631_07880 PF17827 PrmC N-terminal domain MJ631_07880 PF02390 Putative methyltransferase MJ631_07880 PF05175 Methyltransferase small domain MJ631_07885 PF00164 Ribosomal protein S12/S23 MJ631_07890 PF00177 Ribosomal protein S7p/S5e MJ631_07895 PF00009 Elongation factor Tu GTP binding domain MJ631_07895 PF00679 Elongation factor G C-terminus MJ631_07895 PF03764 Elongation factor G, domain IV MJ631_07895 PF03144 Elongation factor Tu domain 2 MJ631_07895 PF14492 Elongation Factor G, domain II MJ631_07900 PF03143 Elongation factor Tu C-terminal domain MJ631_07900 PF00009 Elongation factor Tu GTP binding domain MJ631_07900 PF03144 Elongation factor Tu domain 2 MJ631_07915 PF00467 KOW motif MJ631_07915 PF02357 Transcription termination factor nusG MJ631_07920 PF00298 Ribosomal protein L11, RNA binding domain MJ631_07920 PF03946 Ribosomal protein L11, N-terminal domain MJ631_07925 PF00687 Ribosomal protein L1p/L10e family MJ631_07930 PF00466 Ribosomal protein L10 MJ631_07935 PF00542 Ribosomal protein L7/L12 C-terminal domain MJ631_07935 PF16320 Ribosomal protein L7/L12 dimerisation domain