locus-tag class description JKF54_00010 PF00892 EamA-like transporter family JKF54_00015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JKF54_00015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JKF54_00015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JKF54_00025 PF01212 Beta-eliminating lyase JKF54_00030 PF01212 Beta-eliminating lyase JKF54_00035 PF00005 ABC transporter JKF54_00035 PF00664 ABC transporter transmembrane region JKF54_00105 PF10431 C-terminal, D2-small domain, of ClpB protein JKF54_00105 PF17871 AAA lid domain JKF54_00105 PF07724 AAA domain (Cdc48 subfamily) JKF54_00105 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_00105 PF02861 Clp amino terminal domain, pathogenicity island component JKF54_00110 PF05088 Bacterial NAD-glutamate dehydrogenase JKF54_00120 PF00990 Diguanylate cyclase, GGDEF domain JKF54_00120 PF00072 Response regulator receiver domain JKF54_00125 PF02565 Recombination protein O C terminal JKF54_00125 PF11967 Recombination protein O N terminal JKF54_00255 PF04984 Phage tail sheath protein subtilisin-like domain JKF54_00255 PF17482 Phage tail sheath C-terminal domain JKF54_00335 PF13091 PLD-like domain JKF54_00350 PF01381 Helix-turn-helix JKF54_00360 PF04002 RadC-like JAB domain JKF54_00365 PF01381 Helix-turn-helix JKF54_00410 PF08478 POTRA domain, FtsQ-type JKF54_00410 PF03799 Cell division protein FtsQ JKF54_00415 PF07478 D-ala D-ala ligase C-terminus JKF54_00415 PF01820 D-ala D-ala ligase N-terminus JKF54_00430 PF00037 4Fe-4S binding domain JKF54_00430 PF11953 Domain of unknown function (DUF3470) JKF54_00450 PF02646 RmuC family JKF54_00455 PF07943 Penicillin-binding protein 5, C-terminal domain JKF54_00455 PF00768 D-alanyl-D-alanine carboxypeptidase JKF54_00460 PF04002 RadC-like JAB domain JKF54_00470 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JKF54_00470 PF01578 Cytochrome C assembly protein JKF54_00480 PF00488 MutS domain V JKF54_00480 PF05192 MutS domain III JKF54_00480 PF05188 MutS domain II JKF54_00480 PF01624 MutS domain I JKF54_00480 PF05190 MutS family domain IV JKF54_00490 PF01336 OB-fold nucleic acid binding domain JKF54_00490 PF00152 tRNA synthetases class II (D, K and N) JKF54_00490 PF02938 GAD domain JKF54_00495 PF01183 Glycosyl hydrolases family 25 JKF54_00500 PF08946 Osmosensory transporter coiled coil JKF54_00500 PF00083 Sugar (and other) transporter JKF54_00505 PF00849 RNA pseudouridylate synthase JKF54_00505 PF01479 S4 domain JKF54_00525 PF00571 CBS domain JKF54_00525 PF01769 Divalent cation transporter JKF54_00525 PF03448 MgtE intracellular N domain JKF54_00535 PF01040 UbiA prenyltransferase family JKF54_00540 PF02033 Ribosome-binding factor A JKF54_00545 PF00009 Elongation factor Tu GTP binding domain JKF54_00545 PF11987 Translation-initiation factor 2 JKF54_00545 PF04760 Translation initiation factor IF-2, N-terminal region JKF54_00550 PF13184 NusA-like KH domain JKF54_00550 PF08529 NusA N-terminal domain JKF54_00550 PF00575 S1 RNA binding domain JKF54_00555 PF00873 AcrB/AcrD/AcrF family JKF54_00565 PF00120 Glutamine synthetase, catalytic domain JKF54_00570 PF08299 Bacterial dnaA protein helix-turn-helix JKF54_00570 PF00308 Bacterial dnaA protein JKF54_00570 PF11638 DnaA N-terminal domain JKF54_00575 PF02355 Protein export membrane protein JKF54_00575 PF07549 SecD/SecF GG Motif JKF54_00585 PF14849 YidC periplasmic domain JKF54_00585 PF02096 60Kd inner membrane protein JKF54_00590 PF00885 6,7-dimethyl-8-ribityllumazine synthase JKF54_00595 PF01029 NusB family JKF54_00605 PF00692 dUTPase JKF54_00635 PF01648 4'-phosphopantetheinyl transferase superfamily JKF54_00640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JKF54_00640 PF03129 Anticodon binding domain JKF54_00660 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JKF54_00660 PF13288 DXP reductoisomerase C-terminal domain JKF54_00660 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JKF54_00675 PF00005 ABC transporter JKF54_00680 PF01113 Dihydrodipicolinate reductase, N-terminus JKF54_00680 PF05173 Dihydrodipicolinate reductase, C-terminus JKF54_00695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JKF54_00710 PF00133 tRNA synthetases class I (I, L, M and V) JKF54_00710 PF08264 Anticodon-binding domain of tRNA JKF54_00720 PF00115 Cytochrome C and Quinol oxidase polypeptide I JKF54_00735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JKF54_00735 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_00740 PF02899 Phage integrase, N-terminal SAM-like domain JKF54_00740 PF00589 Phage integrase family JKF54_00745 PF02934 GatB/GatE catalytic domain JKF54_00745 PF02637 GatB domain JKF54_00750 PF00676 Dehydrogenase E1 component JKF54_00755 PF03653 Uncharacterised protein family (UPF0093) JKF54_00760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JKF54_00760 PF00529 HlyD membrane-fusion protein of T1SS JKF54_00765 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JKF54_00765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JKF54_00770 PF00115 Cytochrome C and Quinol oxidase polypeptide I JKF54_00775 PF01040 UbiA prenyltransferase family JKF54_00780 PF00075 RNase H JKF54_00790 PF09190 DALR domain JKF54_00790 PF01406 tRNA synthetases class I (C) catalytic domain JKF54_00795 PF06055 Exopolysaccharide synthesis, ExoD JKF54_00805 PF02416 mttA/Hcf106 family JKF54_00810 PF08402 TOBE domain JKF54_00810 PF00005 ABC transporter JKF54_00825 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JKF54_00835 PF06071 Protein of unknown function (DUF933) JKF54_00835 PF01926 50S ribosome-binding GTPase JKF54_00890 PF04002 RadC-like JAB domain JKF54_00950 PF01548 Transposase JKF54_00950 PF02371 Transposase IS116/IS110/IS902 family JKF54_00995 PF00075 RNase H JKF54_01000 PF08676 MutL C terminal dimerisation domain JKF54_01000 PF01119 DNA mismatch repair protein, C-terminal domain JKF54_01010 PF04002 RadC-like JAB domain JKF54_01030 PF00892 EamA-like transporter family JKF54_01035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JKF54_01035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JKF54_01035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JKF54_01045 PF01212 Beta-eliminating lyase JKF54_01050 PF01212 Beta-eliminating lyase JKF54_01055 PF00664 ABC transporter transmembrane region JKF54_01055 PF00005 ABC transporter JKF54_01075 PF16363 GDP-mannose 4,6 dehydratase JKF54_01080 PF12804 MobA-like NTP transferase domain JKF54_01080 PF00132 Bacterial transferase hexapeptide (six repeats) JKF54_01080 PF14602 Hexapeptide repeat of succinyl-transferase JKF54_01095 PF13333 Integrase core domain JKF54_01095 PF00665 Integrase core domain JKF54_01095 PF13276 HTH-like domain JKF54_01100 PF13276 HTH-like domain JKF54_01100 PF13333 Integrase core domain JKF54_01100 PF00665 Integrase core domain JKF54_01110 PF01348 Type II intron maturase JKF54_01110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JKF54_01140 PF17761 DUF1016 N-terminal domain JKF54_01140 PF06250 YhcG PDDEXK nuclease domain JKF54_01165 PF01555 DNA methylase JKF54_01190 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JKF54_01190 PF01348 Type II intron maturase JKF54_01210 PF00578 AhpC/TSA family JKF54_01210 PF10417 C-terminal domain of 1-Cys peroxiredoxin JKF54_01215 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_01225 PF03109 ABC1 family JKF54_01230 PF00005 ABC transporter JKF54_01235 PF01297 Zinc-uptake complex component A periplasmic JKF54_01245 PF00471 Ribosomal protein L33 JKF54_01250 PF00575 S1 RNA binding domain JKF54_01250 PF12111 Polyribonucleotide phosphorylase C terminal JKF54_01250 PF10150 Ribonuclease E/G family JKF54_01255 PF00012 Hsp70 protein JKF54_01260 PF01722 BolA-like protein JKF54_01265 PF01053 Cys/Met metabolism PLP-dependent enzyme JKF54_01270 PF08245 Mur ligase middle domain JKF54_01270 PF02875 Mur ligase family, glutamate ligase domain JKF54_01285 PF01300 Telomere recombination JKF54_01290 PF09115 DNA polymerase III, delta subunit, C terminal JKF54_01305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JKF54_01305 PF00361 Proton-conducting membrane transporter JKF54_01305 PF13244 Domain of unknown function (DUF4040) JKF54_01310 PF03796 DnaB-like helicase C terminal domain JKF54_01310 PF00772 DnaB-like helicase N terminal domain JKF54_01320 PF06271 RDD family JKF54_01330 PF01979 Amidohydrolase family JKF54_01335 PF01612 3'-5' exonuclease JKF54_01335 PF00570 HRDC domain JKF54_01340 PF01121 Dephospho-CoA kinase JKF54_01355 PF09334 tRNA synthetases class I (M) JKF54_01355 PF08264 Anticodon-binding domain of tRNA JKF54_01385 PF00268 Ribonucleotide reductase, small chain JKF54_01395 PF01571 Aminomethyltransferase folate-binding domain JKF54_01400 PF00166 Chaperonin 10 Kd subunit JKF54_01405 PF00118 TCP-1/cpn60 chaperonin family JKF54_01415 PF01235 Sodium:alanine symporter family JKF54_01425 PF02545 Maf-like protein JKF54_01430 PF01176 Translation initiation factor 1A / IF-1 JKF54_01440 PF00709 Adenylosuccinate synthetase JKF54_01450 PF00696 Amino acid kinase family JKF54_01455 PF01926 50S ribosome-binding GTPase JKF54_01460 PF00472 RF-1 domain JKF54_01460 PF03462 PCRF domain JKF54_01480 PF07690 Major Facilitator Superfamily JKF54_01485 PF08245 Mur ligase middle domain JKF54_01485 PF02875 Mur ligase family, glutamate ligase domain JKF54_01485 PF01225 Mur ligase family, catalytic domain JKF54_01490 PF03330 Lytic transglycolase JKF54_01500 PF01494 FAD binding domain JKF54_01525 PF01467 Cytidylyltransferase-like JKF54_01540 PF01255 Putative undecaprenyl diphosphate synthase JKF54_01555 PF02817 e3 binding domain JKF54_01555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JKF54_01555 PF00364 Biotin-requiring enzyme JKF54_01565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JKF54_01565 PF01348 Type II intron maturase JKF54_01630 PF04002 RadC-like JAB domain JKF54_01665 PF01653 NAD-dependent DNA ligase adenylation domain JKF54_01665 PF03120 NAD-dependent DNA ligase OB-fold domain JKF54_01665 PF12826 Helix-hairpin-helix motif JKF54_01665 PF00533 BRCA1 C Terminus (BRCT) domain JKF54_01680 PF00156 Phosphoribosyl transferase domain JKF54_01690 PF01565 FAD binding domain JKF54_01690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JKF54_01695 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JKF54_01695 PF03900 Porphobilinogen deaminase, C-terminal domain JKF54_01705 PF02355 Protein export membrane protein JKF54_01725 PF00919 Uncharacterized protein family UPF0004 JKF54_01725 PF04055 Radical SAM superfamily JKF54_01740 PF00270 DEAD/DEAH box helicase JKF54_01740 PF17191 RecG wedge domain JKF54_01740 PF00271 Helicase conserved C-terminal domain JKF54_01745 PF00444 Ribosomal protein L36 JKF54_01750 PF03618 Kinase/pyrophosphorylase JKF54_01755 PF01578 Cytochrome C assembly protein JKF54_01765 PF00263 Bacterial type II and III secretion system protein JKF54_01765 PF03958 Bacterial type II/III secretion system short domain JKF54_01770 PF00117 Glutamine amidotransferase class-I JKF54_01770 PF02540 NAD synthase JKF54_01770 PF00958 GMP synthase C terminal domain JKF54_01775 PF03471 Transporter associated domain JKF54_01775 PF03741 Integral membrane protein TerC family JKF54_01790 PF06421 GTP-binding protein LepA C-terminus JKF54_01790 PF03144 Elongation factor Tu domain 2 JKF54_01790 PF00009 Elongation factor Tu GTP binding domain JKF54_01790 PF14492 Elongation Factor G, domain II JKF54_01790 PF00679 Elongation factor G C-terminus JKF54_01800 PF00462 Glutaredoxin JKF54_01805 PF01687 Riboflavin kinase JKF54_01805 PF06574 FAD synthetase JKF54_01810 PF01252 Signal peptidase (SPase) II JKF54_01815 PF05193 Peptidase M16 inactive domain JKF54_01815 PF00675 Insulinase (Peptidase family M16) JKF54_01825 PF00551 Formyl transferase JKF54_01845 PF01668 SmpB protein JKF54_01850 PF01790 Prolipoprotein diacylglyceryl transferase JKF54_01860 PF13091 PLD-like domain JKF54_01865 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JKF54_01900 PF02779 Transketolase, pyrimidine binding domain JKF54_01900 PF00676 Dehydrogenase E1 component JKF54_01900 PF16078 2-oxoglutarate dehydrogenase N-terminus JKF54_01900 PF16870 2-oxoglutarate dehydrogenase C-terminal JKF54_01910 PF00579 tRNA synthetases class I (W and Y) JKF54_01915 PF01025 GrpE JKF54_01920 PF00348 Polyprenyl synthetase JKF54_01925 PF00886 Ribosomal protein S16 JKF54_01945 PF00730 HhH-GPD superfamily base excision DNA repair protein JKF54_01945 PF00633 Helix-hairpin-helix motif JKF54_01945 PF10576 Iron-sulfur binding domain of endonuclease III JKF54_01960 PF02142 MGS-like domain JKF54_01960 PF01808 AICARFT/IMPCHase bienzyme JKF54_01970 PF00551 Formyl transferase JKF54_01970 PF02911 Formyl transferase, C-terminal domain JKF54_01975 PF00453 Ribosomal protein L20 JKF54_01980 PF01632 Ribosomal protein L35 JKF54_02000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JKF54_02000 PF01411 tRNA synthetases class II (A) JKF54_02000 PF02272 DHHA1 domain JKF54_02015 PF01676 Metalloenzyme superfamily JKF54_02015 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JKF54_02020 PF00698 Acyl transferase domain JKF54_02025 PF01197 Ribosomal protein L31 JKF54_02030 PF01513 ATP-NAD kinase JKF54_02040 PF13416 Bacterial extracellular solute-binding protein JKF54_02045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JKF54_02045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JKF54_02060 PF00625 Guanylate kinase JKF54_02070 PF02910 Fumarate reductase flavoprotein C-term JKF54_02070 PF00890 FAD binding domain JKF54_02080 PF00132 Bacterial transferase hexapeptide (six repeats) JKF54_02080 PF14602 Hexapeptide repeat of succinyl-transferase JKF54_02080 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JKF54_02115 PF08245 Mur ligase middle domain JKF54_02120 PF00121 Triosephosphate isomerase JKF54_02130 PF00398 Ribosomal RNA adenine dimethylase JKF54_02135 PF00571 CBS domain JKF54_02135 PF00478 IMP dehydrogenase / GMP reductase domain JKF54_02140 PF07497 Rho termination factor, RNA-binding domain JKF54_02140 PF07498 Rho termination factor, N-terminal domain JKF54_02140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JKF54_02155 PF02371 Transposase IS116/IS110/IS902 family JKF54_02155 PF01548 Transposase JKF54_02170 PF18324 Hypothetical protein TT1725 JKF54_02170 PF00180 Isocitrate/isopropylmalate dehydrogenase JKF54_02180 PF02844 Phosphoribosylglycinamide synthetase, N domain JKF54_02180 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JKF54_02180 PF02843 Phosphoribosylglycinamide synthetase, C domain JKF54_02185 PF02403 Seryl-tRNA synthetase N-terminal domain JKF54_02185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JKF54_02195 PF01207 Dihydrouridine synthase (Dus) JKF54_02200 PF04983 RNA polymerase Rpb1, domain 3 JKF54_02200 PF05000 RNA polymerase Rpb1, domain 4 JKF54_02200 PF04998 RNA polymerase Rpb1, domain 5 JKF54_02200 PF04563 RNA polymerase beta subunit JKF54_02200 PF04561 RNA polymerase Rpb2, domain 2 JKF54_02200 PF04565 RNA polymerase Rpb2, domain 3 JKF54_02200 PF10385 RNA polymerase beta subunit external 1 domain JKF54_02200 PF00562 RNA polymerase Rpb2, domain 6 JKF54_02200 PF04560 RNA polymerase Rpb2, domain 7 JKF54_02200 PF00623 RNA polymerase Rpb1, domain 2 JKF54_02200 PF04997 RNA polymerase Rpb1, domain 1 JKF54_02205 PF00542 Ribosomal protein L7/L12 C-terminal domain JKF54_02205 PF16320 Ribosomal protein L7/L12 dimerisation domain JKF54_02210 PF00466 Ribosomal protein L10 JKF54_02215 PF00687 Ribosomal protein L1p/L10e family JKF54_02220 PF03946 Ribosomal protein L11, N-terminal domain JKF54_02220 PF00298 Ribosomal protein L11, RNA binding domain JKF54_02225 PF00467 KOW motif JKF54_02225 PF02357 Transcription termination factor nusG JKF54_02240 PF00009 Elongation factor Tu GTP binding domain JKF54_02240 PF03144 Elongation factor Tu domain 2 JKF54_02240 PF03143 Elongation factor Tu C-terminal domain JKF54_02245 PF03144 Elongation factor Tu domain 2 JKF54_02245 PF00009 Elongation factor Tu GTP binding domain JKF54_02245 PF00679 Elongation factor G C-terminus JKF54_02245 PF03764 Elongation factor G, domain IV JKF54_02245 PF14492 Elongation Factor G, domain II JKF54_02250 PF00177 Ribosomal protein S7p/S5e JKF54_02255 PF00164 Ribosomal protein S12/S23 JKF54_02260 PF17827 PrmC N-terminal domain JKF54_02260 PF05175 Methyltransferase small domain JKF54_02260 PF02390 Putative methyltransferase JKF54_02270 PF04972 BON domain JKF54_02280 PF05697 Bacterial trigger factor protein (TF) JKF54_02280 PF05698 Bacterial trigger factor protein (TF) C-terminus JKF54_02280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JKF54_02285 PF00574 Clp protease JKF54_02290 PF10431 C-terminal, D2-small domain, of ClpB protein JKF54_02290 PF07724 AAA domain (Cdc48 subfamily) JKF54_02290 PF06689 ClpX C4-type zinc finger JKF54_02295 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_02295 PF05362 Lon protease (S16) C-terminal proteolytic domain JKF54_02295 PF02190 ATP-dependent protease La (LON) substrate-binding domain JKF54_02300 PF03717 Penicillin-binding Protein dimerisation domain JKF54_02300 PF00905 Penicillin binding protein transpeptidase domain JKF54_02305 PF01522 Polysaccharide deacetylase JKF54_02310 PF01078 Magnesium chelatase, subunit ChlI JKF54_02310 PF13335 Magnesium chelatase, subunit ChlI C-terminal JKF54_02320 PF12327 FtsZ family, C-terminal domain JKF54_02320 PF00091 Tubulin/FtsZ family, GTPase domain JKF54_02335 PF02130 Uncharacterized protein family UPF0054 JKF54_02340 PF13085 2Fe-2S iron-sulfur cluster binding domain JKF54_02355 PF04608 Phosphatidylglycerophosphatase A JKF54_02360 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JKF54_02360 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JKF54_02365 PF00486 Transcriptional regulatory protein, C terminal JKF54_02365 PF00072 Response regulator receiver domain JKF54_02385 PF01702 Queuine tRNA-ribosyltransferase JKF54_02395 PF05193 Peptidase M16 inactive domain JKF54_02395 PF00675 Insulinase (Peptidase family M16) JKF54_02400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JKF54_02400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JKF54_02425 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JKF54_02430 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JKF54_02435 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JKF54_02440 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JKF54_02445 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JKF54_02455 PF01921 tRNA synthetases class I (K) JKF54_02465 PF01728 FtsJ-like methyltransferase JKF54_02470 PF10691 Protein of unknown function (DUF2497) JKF54_02480 PF00572 Ribosomal protein L13 JKF54_02485 PF00380 Ribosomal protein S9/S16 JKF54_02495 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JKF54_02505 PF00011 Hsp20/alpha crystallin family JKF54_02510 PF00749 tRNA synthetases class I (E and Q), catalytic domain JKF54_02520 PF00364 Biotin-requiring enzyme JKF54_02520 PF02785 Biotin carboxylase C-terminal domain JKF54_02520 PF18140 Propionyl-coenzyme A carboxylase BT domain JKF54_02520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JKF54_02520 PF00289 Biotin carboxylase, N-terminal domain JKF54_02525 PF02628 Cytochrome oxidase assembly protein JKF54_02545 PF00137 ATP synthase subunit C JKF54_02550 PF00119 ATP synthase A chain JKF54_02560 PF01588 Putative tRNA binding domain JKF54_02560 PF03147 Ferredoxin-fold anticodon binding domain JKF54_02560 PF03484 tRNA synthetase B5 domain JKF54_02560 PF03483 B3/4 domain JKF54_02560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JKF54_02570 PF08264 Anticodon-binding domain of tRNA JKF54_02570 PF00133 tRNA synthetases class I (I, L, M and V) JKF54_02580 PF04055 Radical SAM superfamily JKF54_02580 PF01938 TRAM domain JKF54_02580 PF00919 Uncharacterized protein family UPF0004 JKF54_02585 PF01368 DHH family JKF54_02585 PF17768 RecJ OB domain JKF54_02585 PF02272 DHHA1 domain JKF54_02590 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JKF54_02600 PF03060 Nitronate monooxygenase JKF54_02615 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JKF54_02625 PF12796 Ankyrin repeats (3 copies) JKF54_02650 PF01321 Creatinase/Prolidase N-terminal domain JKF54_02650 PF00557 Metallopeptidase family M24 JKF54_02655 PF13932 GidA associated domain JKF54_02655 PF01134 Glucose inhibited division protein A JKF54_02670 PF03023 Lipid II flippase MurJ JKF54_02690 PF04860 Phage portal protein JKF54_02705 PF03099 Biotin/lipoate A/B protein ligase family JKF54_02710 PF02016 LD-carboxypeptidase N-terminal domain JKF54_02710 PF17676 LD-carboxypeptidase C-terminal domain JKF54_02725 PF07733 Bacterial DNA polymerase III alpha NTPase domain JKF54_02725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JKF54_02725 PF02811 PHP domain JKF54_02725 PF14579 Helix-hairpin-helix motif JKF54_02730 PF01250 Ribosomal protein S6 JKF54_02735 PF01084 Ribosomal protein S18 JKF54_02740 PF03948 Ribosomal protein L9, C-terminal domain JKF54_02740 PF01281 Ribosomal protein L9, N-terminal domain JKF54_02745 PF10397 Adenylosuccinate lyase C-terminus JKF54_02745 PF00206 Lyase JKF54_02765 PF01546 Peptidase family M20/M25/M40 JKF54_02765 PF07687 Peptidase dimerisation domain JKF54_02800 PF00186 Dihydrofolate reductase JKF54_02810 PF02152 Dihydroneopterin aldolase JKF54_02815 PF03070 TENA/THI-4/PQQC family JKF54_02835 PF00085 Thioredoxin JKF54_02855 PF01926 50S ribosome-binding GTPase JKF54_02855 PF07650 KH domain JKF54_02915 PF17773 UPF0176 acylphosphatase like domain JKF54_02915 PF00581 Rhodanese-like domain JKF54_02920 PF00528 Binding-protein-dependent transport system inner membrane component JKF54_02925 PF04379 ApaG domain JKF54_02930 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JKF54_02930 PF02222 ATP-grasp domain JKF54_02935 PF01118 Semialdehyde dehydrogenase, NAD binding domain JKF54_02935 PF02774 Semialdehyde dehydrogenase, dimerisation domain JKF54_02945 PF00324 Amino acid permease JKF54_02950 PF13520 Amino acid permease JKF54_02960 PF01975 Survival protein SurE JKF54_02965 PF13393 Histidyl-tRNA synthetase JKF54_02965 PF03129 Anticodon binding domain JKF54_02975 PF00684 DnaJ central domain JKF54_02975 PF01556 DnaJ C terminal domain JKF54_02975 PF00226 DnaJ domain JKF54_02990 PF00033 Cytochrome b/b6/petB JKF54_02990 PF00032 Cytochrome b(C-terminal)/b6/petD JKF54_02995 PF00033 Cytochrome b/b6/petB JKF54_02995 PF02167 Cytochrome C1 family JKF54_02995 PF00032 Cytochrome b(C-terminal)/b6/petD JKF54_03000 PF17757 UvrB interaction domain JKF54_03000 PF02151 UvrB/uvrC motif JKF54_03000 PF00271 Helicase conserved C-terminal domain JKF54_03000 PF12344 Ultra-violet resistance protein B JKF54_03000 PF04851 Type III restriction enzyme, res subunit JKF54_03010 PF00216 Bacterial DNA-binding protein JKF54_03015 PF13411 MerR HTH family regulatory protein JKF54_03020 PF01551 Peptidase family M23 JKF54_03025 PF09334 tRNA synthetases class I (M) JKF54_03025 PF13603 Leucyl-tRNA synthetase, Domain 2 JKF54_03025 PF00133 tRNA synthetases class I (I, L, M and V) JKF54_03025 PF08264 Anticodon-binding domain of tRNA JKF54_03040 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JKF54_03040 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JKF54_03045 PF02441 Flavoprotein JKF54_03050 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) JKF54_03055 PF01595 Cyclin M transmembrane N-terminal domain JKF54_03055 PF00571 CBS domain JKF54_03055 PF03471 Transporter associated domain JKF54_03065 PF00334 Nucleoside diphosphate kinase JKF54_03075 PF00762 Ferrochelatase JKF54_03090 PF00227 Proteasome subunit JKF54_03095 PF10431 C-terminal, D2-small domain, of ClpB protein JKF54_03095 PF07724 AAA domain (Cdc48 subfamily) JKF54_03095 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_03105 PF00348 Polyprenyl synthetase JKF54_03110 PF00550 Phosphopantetheine attachment site JKF54_03115 PF00109 Beta-ketoacyl synthase, N-terminal domain JKF54_03115 PF02801 Beta-ketoacyl synthase, C-terminal domain JKF54_03125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JKF54_03130 PF02511 Thymidylate synthase complementing protein JKF54_03150 PF00719 Inorganic pyrophosphatase JKF54_03175 PF00691 OmpA family JKF54_03180 PF01171 PP-loop family JKF54_03185 PF01434 Peptidase family M41 JKF54_03185 PF06480 FtsH Extracellular JKF54_03185 PF17862 AAA+ lid domain JKF54_03185 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_03200 PF00364 Biotin-requiring enzyme JKF54_03200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JKF54_03200 PF02817 e3 binding domain JKF54_03210 PF00005 ABC transporter JKF54_03210 PF00664 ABC transporter transmembrane region JKF54_03220 PF00814 Glycoprotease family JKF54_03230 PF13426 PAS domain JKF54_03230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JKF54_03230 PF13188 PAS domain JKF54_03230 PF00512 His Kinase A (phospho-acceptor) domain JKF54_03230 PF00989 PAS fold JKF54_03235 PF00202 Aminotransferase class-III JKF54_03245 PF05239 PRC-barrel domain JKF54_03245 PF01782 RimM N-terminal domain JKF54_03250 PF08207 Elongation factor P (EF-P) KOW-like domain JKF54_03250 PF09285 Elongation factor P, C-terminal JKF54_03250 PF01132 Elongation factor P (EF-P) OB domain JKF54_03260 PF00155 Aminotransferase class I and II JKF54_03280 PF00183 Hsp90 protein JKF54_03295 PF02132 RecR protein JKF54_03295 PF13662 Toprim domain JKF54_03310 PF12796 Ankyrin repeats (3 copies) JKF54_03315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JKF54_03315 PF18074 Primosomal protein N C-terminal domain JKF54_03315 PF17764 3′ DNA-binding domain (3′BD) JKF54_03315 PF00270 DEAD/DEAH box helicase JKF54_03345 PF09312 SurA N-terminal domain JKF54_03350 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_03385 PF02401 LytB protein JKF54_03410 PF00436 Single-strand binding protein family JKF54_03415 PF00701 Dihydrodipicolinate synthetase family JKF54_03425 PF08240 Alcohol dehydrogenase GroES-like domain JKF54_03425 PF00107 Zinc-binding dehydrogenase JKF54_03435 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JKF54_03440 PF01027 Inhibitor of apoptosis-promoting Bax1 JKF54_03445 PF00266 Aminotransferase class-V JKF54_03450 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JKF54_03460 PF00005 ABC transporter JKF54_03465 PF01521 Iron-sulphur cluster biosynthesis JKF54_03470 PF01966 HD domain JKF54_03470 PF13286 Phosphohydrolase-associated domain JKF54_03475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JKF54_03475 PF01872 RibD C-terminal domain JKF54_03485 PF01509 TruB family pseudouridylate synthase (N terminal domain) JKF54_03485 PF16198 tRNA pseudouridylate synthase B C-terminal domain JKF54_03490 PF00312 Ribosomal protein S15 JKF54_03495 PF00575 S1 RNA binding domain JKF54_03495 PF03725 3' exoribonuclease family, domain 2 JKF54_03495 PF01138 3' exoribonuclease family, domain 1 JKF54_03495 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JKF54_03495 PF00013 KH domain JKF54_03500 PF00834 Ribulose-phosphate 3 epimerase family JKF54_03515 PF00162 Phosphoglycerate kinase JKF54_03520 PF00464 Serine hydroxymethyltransferase JKF54_03535 PF00893 Small Multidrug Resistance protein JKF54_03540 PF00155 Aminotransferase class I and II JKF54_03545 PF01208 Uroporphyrinogen decarboxylase (URO-D) JKF54_03550 PF03471 Transporter associated domain JKF54_03550 PF00571 CBS domain JKF54_03555 PF01609 Transposase DDE domain JKF54_03585 PF00361 Proton-conducting membrane transporter JKF54_03590 PF01098 Cell cycle protein JKF54_03595 PF00266 Aminotransferase class-V JKF54_03615 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_03640 PF02899 Phage integrase, N-terminal SAM-like domain JKF54_03640 PF00589 Phage integrase family JKF54_03650 PF01649 Ribosomal protein S20 JKF54_03655 PF00285 Citrate synthase, C-terminal domain JKF54_03670 PF01541 GIY-YIG catalytic domain JKF54_03680 PF05496 Holliday junction DNA helicase RuvB P-loop domain JKF54_03680 PF05491 RuvB C-terminal winged helix domain JKF54_03680 PF17864 RuvB AAA lid domain JKF54_03685 PF01330 RuvA N terminal domain JKF54_03685 PF07499 RuvA, C-terminal domain JKF54_03690 PF00034 Cytochrome c JKF54_03700 PF13361 UvrD-like helicase C-terminal domain JKF54_03700 PF00580 UvrD/REP helicase N-terminal domain JKF54_03710 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JKF54_03715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JKF54_03720 PF00361 Proton-conducting membrane transporter JKF54_03720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JKF54_03725 PF00361 Proton-conducting membrane transporter JKF54_03730 PF00361 Proton-conducting membrane transporter JKF54_03735 PF08279 HTH domain JKF54_03735 PF02237 Biotin protein ligase C terminal domain JKF54_03735 PF03099 Biotin/lipoate A/B protein ligase family JKF54_03740 PF03100 CcmE JKF54_03775 PF10531 SLBB domain JKF54_03775 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JKF54_03775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JKF54_03780 PF00707 Translation initiation factor IF-3, C-terminal domain JKF54_03780 PF05198 Translation initiation factor IF-3, N-terminal domain JKF54_03785 PF03129 Anticodon binding domain JKF54_03785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JKF54_03785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JKF54_03790 PF12838 4Fe-4S dicluster domain JKF54_03795 PF10396 GTP-binding protein TrmE N-terminus JKF54_03795 PF01926 50S ribosome-binding GTPase JKF54_03795 PF12631 MnmE helical domain JKF54_03810 PF01594 AI-2E family transporter JKF54_03825 PF02542 YgbB family JKF54_03825 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JKF54_03830 PF02195 ParB-like nuclease domain JKF54_03830 PF17762 HTH domain found in ParB protein JKF54_03835 PF13614 AAA domain JKF54_03840 PF13188 PAS domain JKF54_03840 PF08448 PAS fold JKF54_03840 PF00512 His Kinase A (phospho-acceptor) domain JKF54_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JKF54_03840 PF00072 Response regulator receiver domain JKF54_03845 PF01218 Coproporphyrinogen III oxidase JKF54_03860 PF04452 RNA methyltransferase JKF54_03875 PF00549 CoA-ligase JKF54_03875 PF08442 ATP-grasp domain JKF54_03880 PF00549 CoA-ligase JKF54_03880 PF02629 CoA binding domain JKF54_03885 PF01678 Diaminopimelate epimerase JKF54_03895 PF00881 Nitroreductase family JKF54_03900 PF02632 BioY family JKF54_03920 PF00521 DNA gyrase/topoisomerase IV, subunit A JKF54_03920 PF03989 DNA gyrase C-terminal domain, beta-propeller JKF54_03925 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JKF54_03925 PF00355 Rieske [2Fe-2S] domain JKF54_03935 PF01523 Putative modulator of DNA gyrase JKF54_03955 PF02875 Mur ligase family, glutamate ligase domain JKF54_03955 PF08245 Mur ligase middle domain JKF54_03970 PF03364 Polyketide cyclase / dehydrase and lipid transport JKF54_03975 PF13462 Thioredoxin JKF54_04005 PF12169 DNA polymerase III subunits gamma and tau domain III JKF54_04010 PF02575 YbaB/EbfC DNA-binding family JKF54_04015 PF13505 Outer membrane protein beta-barrel domain JKF54_04020 PF04545 Sigma-70, region 4 JKF54_04020 PF04542 Sigma-70 region 2 JKF54_04020 PF00140 Sigma-70 factor, region 1.2 JKF54_04030 PF02767 DNA polymerase III beta subunit, central domain JKF54_04030 PF00712 DNA polymerase III beta subunit, N-terminal domain JKF54_04030 PF02768 DNA polymerase III beta subunit, C-terminal domain JKF54_04035 PF01416 tRNA pseudouridine synthase JKF54_04040 PF00154 recA bacterial DNA recombination protein JKF54_04045 PF01195 Peptidyl-tRNA hydrolase JKF54_04050 PF14693 Ribosomal protein TL5, C-terminal domain JKF54_04050 PF01386 Ribosomal L25p family JKF54_04060 PF01795 MraW methylase family JKF54_04065 PF00083 Sugar (and other) transporter JKF54_04070 PF00557 Metallopeptidase family M24 JKF54_04075 PF02491 SHS2 domain inserted in FTSA JKF54_04080 PF01327 Polypeptide deformylase JKF54_04085 PF03167 Uracil DNA glycosylase superfamily JKF54_04090 PF03232 Ubiquinone biosynthesis protein COQ7 JKF54_04100 PF00156 Phosphoribosyl transferase domain JKF54_04100 PF13537 Glutamine amidotransferase domain JKF54_04110 PF03631 Virulence factor BrkB JKF54_04115 PF00106 short chain dehydrogenase JKF54_04125 PF02142 MGS-like domain JKF54_04125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JKF54_04125 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JKF54_04130 PF01219 Prokaryotic diacylglycerol kinase JKF54_04135 PF00849 RNA pseudouridylate synthase JKF54_04155 PF02223 Thymidylate kinase JKF54_04165 PF02254 TrkA-N domain JKF54_04165 PF00999 Sodium/hydrogen exchanger family JKF54_04170 PF13840 ACT domain JKF54_04170 PF01842 ACT domain JKF54_04170 PF00696 Amino acid kinase family JKF54_04175 PF02463 RecF/RecN/SMC N terminal domain JKF54_04180 PF00578 AhpC/TSA family JKF54_04185 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JKF54_04185 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JKF54_04190 PF03033 Glycosyltransferase family 28 N-terminal domain JKF54_04190 PF04101 Glycosyltransferase family 28 C-terminal domain JKF54_04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_04200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JKF54_04225 PF01926 50S ribosome-binding GTPase JKF54_04225 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JKF54_04235 PF01039 Carboxyl transferase domain JKF54_04265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JKF54_04265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JKF54_04265 PF06827 Zinc finger found in FPG and IleRS JKF54_04270 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JKF54_04270 PF01243 Pyridoxamine 5'-phosphate oxidase JKF54_04280 PF00528 Binding-protein-dependent transport system inner membrane component JKF54_04285 PF01245 Ribosomal protein L19 JKF54_04290 PF01746 tRNA (Guanine-1)-methyltransferase JKF54_04295 PF01259 SAICAR synthetase JKF54_04300 PF00586 AIR synthase related protein, N-terminal domain JKF54_04300 PF02769 AIR synthase related protein, C-terminal domain JKF54_04320 PF01351 Ribonuclease HII JKF54_04325 PF00953 Glycosyl transferase family 4 JKF54_04335 PF02245 Methylpurine-DNA glycosylase (MPG) JKF54_04345 PF10609 NUBPL iron-transfer P-loop NTPase JKF54_04365 PF00579 tRNA synthetases class I (W and Y) JKF54_04380 PF00293 NUDIX domain JKF54_04385 PF01026 TatD related DNase JKF54_04390 PF00056 lactate/malate dehydrogenase, NAD binding domain JKF54_04390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JKF54_04395 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JKF54_04400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JKF54_04405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JKF54_04410 PF01230 HIT domain JKF54_04425 PF08245 Mur ligase middle domain JKF54_04425 PF02875 Mur ligase family, glutamate ligase domain JKF54_04425 PF01225 Mur ligase family, catalytic domain JKF54_04430 PF01370 NAD dependent epimerase/dehydratase family JKF54_04430 PF08338 Domain of unknown function (DUF1731) JKF54_04440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JKF54_04440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JKF54_04445 PF02504 Fatty acid synthesis protein JKF54_04450 PF01783 Ribosomal L32p protein family JKF54_04455 PF02405 Permease MlaE JKF54_04460 PF00005 ABC transporter JKF54_04465 PF02881 SRP54-type protein, helical bundle domain JKF54_04465 PF00448 SRP54-type protein, GTPase domain JKF54_04465 PF02978 Signal peptide binding domain JKF54_04480 PF07992 Pyridine nucleotide-disulphide oxidoreductase JKF54_04485 PF07977 FabA-like domain JKF54_04495 PF07244 Surface antigen variable number repeat JKF54_04495 PF01103 Surface antigen JKF54_04500 PF17820 PDZ domain JKF54_04500 PF02163 Peptidase family M50 JKF54_04515 PF00216 Bacterial DNA-binding protein JKF54_04520 PF00575 S1 RNA binding domain JKF54_04525 PF02390 Putative methyltransferase JKF54_04545 PF17862 AAA+ lid domain JKF54_04545 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_04545 PF01434 Peptidase family M41 JKF54_04560 PF13180 PDZ domain JKF54_04565 PF01145 SPFH domain / Band 7 family JKF54_04570 PF01145 SPFH domain / Band 7 family JKF54_04575 PF08676 MutL C terminal dimerisation domain JKF54_04575 PF01119 DNA mismatch repair protein, C-terminal domain JKF54_04580 PF00731 AIR carboxylase JKF54_04595 PF01192 RNA polymerase Rpb6 JKF54_04605 PF03334 Na+/H+ antiporter subunit JKF54_04610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JKF54_04610 PF13244 Domain of unknown function (DUF4040) JKF54_04610 PF00361 Proton-conducting membrane transporter JKF54_04620 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JKF54_04625 PF04546 Sigma-70, non-essential region JKF54_04625 PF03979 Sigma-70 factor, region 1.1 JKF54_04625 PF00140 Sigma-70 factor, region 1.2 JKF54_04625 PF04542 Sigma-70 region 2 JKF54_04625 PF04539 Sigma-70 region 3 JKF54_04625 PF04545 Sigma-70, region 4 JKF54_04650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JKF54_04655 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JKF54_04670 PF12704 MacB-like periplasmic core domain JKF54_04670 PF02687 FtsX-like permease family JKF54_04685 PF00231 ATP synthase JKF54_04690 PF01523 Putative modulator of DNA gyrase JKF54_04695 PF00313 'Cold-shock' DNA-binding domain JKF54_04700 PF00271 Helicase conserved C-terminal domain JKF54_04700 PF00270 DEAD/DEAH box helicase JKF54_04705 PF10431 C-terminal, D2-small domain, of ClpB protein JKF54_04705 PF17871 AAA lid domain JKF54_04705 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_04705 PF07724 AAA domain (Cdc48 subfamily) JKF54_04705 PF02861 Clp amino terminal domain, pathogenicity island component JKF54_04715 PF01791 DeoC/LacD family aldolase JKF54_04725 PF01180 Dihydroorotate dehydrogenase JKF54_04730 PF00035 Double-stranded RNA binding motif JKF54_04730 PF14622 Ribonuclease-III-like JKF54_04735 PF02630 SCO1/SenC JKF54_04740 PF00929 Exonuclease JKF54_04750 PF02556 Preprotein translocase subunit SecB JKF54_04755 PF00694 Aconitase C-terminal domain JKF54_04755 PF00330 Aconitase family (aconitate hydratase) JKF54_04760 PF00171 Aldehyde dehydrogenase family JKF54_04760 PF14850 DNA-binding domain of Proline dehydrogenase JKF54_04760 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JKF54_04760 PF01619 Proline dehydrogenase JKF54_04770 PF00883 Cytosol aminopeptidase family, catalytic domain JKF54_04770 PF02789 Cytosol aminopeptidase family, N-terminal domain JKF54_04780 PF00384 Molybdopterin oxidoreductase JKF54_04780 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JKF54_04780 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JKF54_04790 PF00146 NADH dehydrogenase JKF54_04795 PF00490 Delta-aminolevulinic acid dehydratase JKF54_04805 PF02091 Glycyl-tRNA synthetase alpha subunit JKF54_04810 PF05746 DALR anticodon binding domain JKF54_04810 PF02092 Glycyl-tRNA synthetase beta subunit JKF54_04815 PF08459 UvrC Helix-hairpin-helix N-terminal JKF54_04815 PF01541 GIY-YIG catalytic domain JKF54_04815 PF02151 UvrB/uvrC motif JKF54_04825 PF08032 RNA 2'-O ribose methyltransferase substrate binding JKF54_04825 PF00588 SpoU rRNA Methylase family JKF54_04830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JKF54_04830 PF01348 Type II intron maturase JKF54_04850 PF01545 Cation efflux family JKF54_04860 PF02660 Glycerol-3-phosphate acyltransferase JKF54_04865 PF01235 Sodium:alanine symporter family JKF54_04870 PF01235 Sodium:alanine symporter family JKF54_04875 PF01066 CDP-alcohol phosphatidyltransferase JKF54_04880 PF02666 Phosphatidylserine decarboxylase JKF54_04895 PF00986 DNA gyrase B subunit, carboxyl terminus JKF54_04895 PF01751 Toprim domain JKF54_04895 PF00204 DNA gyrase B JKF54_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JKF54_04900 PF01425 Amidase JKF54_04905 PF00476 DNA polymerase family A JKF54_04905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JKF54_04905 PF01367 5'-3' exonuclease, C-terminal SAM fold JKF54_04935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JKF54_04935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JKF54_04935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JKF54_04935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JKF54_04945 PF00677 Lumazine binding domain JKF54_04955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JKF54_04955 PF01409 tRNA synthetases class II core domain (F) JKF54_04960 PF12804 MobA-like NTP transferase domain JKF54_04960 PF14602 Hexapeptide repeat of succinyl-transferase JKF54_04960 PF00132 Bacterial transferase hexapeptide (six repeats) JKF54_04980 PF00829 Ribosomal prokaryotic L21 protein JKF54_04985 PF01016 Ribosomal L27 protein JKF54_04995 PF02772 S-adenosylmethionine synthetase, central domain JKF54_04995 PF02773 S-adenosylmethionine synthetase, C-terminal domain JKF54_04995 PF00438 S-adenosylmethionine synthetase, N-terminal domain JKF54_05000 PF03070 TENA/THI-4/PQQC family JKF54_05010 PF00510 Cytochrome c oxidase subunit III JKF54_05015 PF02075 Crossover junction endodeoxyribonuclease RuvC JKF54_05020 PF03652 Holliday junction resolvase JKF54_05025 PF00317 Ribonucleotide reductase, all-alpha domain JKF54_05025 PF02867 Ribonucleotide reductase, barrel domain JKF54_05025 PF03477 ATP cone domain JKF54_05050 PF00825 Ribonuclease P JKF54_05055 PF00468 Ribosomal protein L34 JKF54_05060 PF00528 Binding-protein-dependent transport system inner membrane component JKF54_05065 PF02874 ATP synthase alpha/beta family, beta-barrel domain JKF54_05065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JKF54_05070 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JKF54_05080 PF00923 Transaldolase/Fructose-6-phosphate aldolase JKF54_05095 PF00117 Glutamine amidotransferase class-I JKF54_05095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JKF54_05110 PF03144 Elongation factor Tu domain 2 JKF54_05110 PF03143 Elongation factor Tu C-terminal domain JKF54_05110 PF00009 Elongation factor Tu GTP binding domain JKF54_05115 PF00338 Ribosomal protein S10p/S20e JKF54_05120 PF00297 Ribosomal protein L3 JKF54_05125 PF00573 Ribosomal protein L4/L1 family JKF54_05130 PF00276 Ribosomal protein L23 JKF54_05135 PF03947 Ribosomal Proteins L2, C-terminal domain JKF54_05135 PF00181 Ribosomal Proteins L2, RNA binding domain JKF54_05140 PF00203 Ribosomal protein S19 JKF54_05145 PF00237 Ribosomal protein L22p/L17e JKF54_05150 PF00189 Ribosomal protein S3, C-terminal domain JKF54_05150 PF07650 KH domain JKF54_05155 PF00252 Ribosomal protein L16p/L10e JKF54_05160 PF00831 Ribosomal L29 protein JKF54_05165 PF00366 Ribosomal protein S17 JKF54_05170 PF00238 Ribosomal protein L14p/L23e JKF54_05175 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JKF54_05180 PF00281 Ribosomal protein L5 JKF54_05180 PF00673 ribosomal L5P family C-terminus JKF54_05185 PF00253 Ribosomal protein S14p/S29e JKF54_05190 PF00410 Ribosomal protein S8 JKF54_05195 PF00347 Ribosomal protein L6 JKF54_05200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JKF54_05205 PF03719 Ribosomal protein S5, C-terminal domain JKF54_05205 PF00333 Ribosomal protein S5, N-terminal domain JKF54_05210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JKF54_05215 PF00344 SecY translocase JKF54_05225 PF00416 Ribosomal protein S13/S18 JKF54_05230 PF00411 Ribosomal protein S11 JKF54_05235 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JKF54_05235 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JKF54_05235 PF01000 RNA polymerase Rpb3/RpoA insert domain JKF54_05240 PF01196 Ribosomal protein L17 JKF54_05245 PF02021 Uncharacterised protein family UPF0102 JKF54_05255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JKF54_05255 PF02874 ATP synthase alpha/beta family, beta-barrel domain JKF54_05255 PF00306 ATP synthase alpha/beta chain, C terminal domain JKF54_05260 PF01272 Transcription elongation factor, GreA/GreB, C-term JKF54_05260 PF03449 Transcription elongation factor, N-terminal JKF54_05265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JKF54_05265 PF00925 GTP cyclohydrolase II JKF54_05285 PF00391 PEP-utilising enzyme, mobile domain JKF54_05285 PF02896 PEP-utilising enzyme, TIM barrel domain JKF54_05285 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JKF54_05295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JKF54_05295 PF00529 HlyD membrane-fusion protein of T1SS JKF54_05300 PF00462 Glutaredoxin JKF54_05310 PF00390 Malic enzyme, N-terminal domain JKF54_05310 PF01515 Phosphate acetyl/butaryl transferase JKF54_05310 PF03949 Malic enzyme, NAD binding domain JKF54_05315 PF01066 CDP-alcohol phosphatidyltransferase JKF54_05330 PF01709 Transcriptional regulator JKF54_05335 PF01551 Peptidase family M23 JKF54_05335 PF01476 LysM domain JKF54_05335 PF08525 Opacity-associated protein A N-terminal motif JKF54_05360 PF07690 Major Facilitator Superfamily JKF54_05365 PF01209 ubiE/COQ5 methyltransferase family JKF54_05370 PF00005 ABC transporter JKF54_05370 PF00664 ABC transporter transmembrane region JKF54_05390 PF00750 tRNA synthetases class I (R) JKF54_05390 PF05746 DALR anticodon binding domain JKF54_05390 PF03485 Arginyl tRNA synthetase N terminal domain JKF54_05395 PF00005 ABC transporter JKF54_05410 PF14437 MafB19-like deaminase JKF54_05420 PF06418 CTP synthase N-terminus JKF54_05420 PF00117 Glutamine amidotransferase class-I JKF54_05450 PF01380 SIS domain JKF54_05455 PF02699 Preprotein translocase subunit JKF54_05465 PF00318 Ribosomal protein S2 JKF54_05470 PF00889 Elongation factor TS JKF54_05475 PF00696 Amino acid kinase family JKF54_05480 PF01765 Ribosome recycling factor JKF54_05495 PF02386 Cation transport protein JKF54_05500 PF00692 dUTPase JKF54_05520 PF00925 GTP cyclohydrolase II JKF54_05525 PF04335 VirB8 protein JKF54_05540 PF00437 Type II/IV secretion system protein JKF54_05545 PF02534 Type IV secretory system Conjugative DNA transfer JKF54_05555 PF01751 Toprim domain JKF54_05555 PF01396 Topoisomerase DNA binding C4 zinc finger JKF54_05555 PF13368 Topoisomerase C-terminal repeat JKF54_05555 PF01131 DNA topoisomerase JKF54_05560 PF07690 Major Facilitator Superfamily JKF54_05560 PF00083 Sugar (and other) transporter JKF54_05565 PF18073 Rubredoxin metal binding domain JKF54_05570 PF00448 SRP54-type protein, GTPase domain JKF54_05570 PF02881 SRP54-type protein, helical bundle domain JKF54_05575 PF01592 NifU-like N terminal domain JKF54_05580 PF01521 Iron-sulphur cluster biosynthesis JKF54_05585 PF07743 HSCB C-terminal oligomerisation domain JKF54_05585 PF00226 DnaJ domain JKF54_05590 PF00012 Hsp70 protein JKF54_05595 PF10502 Signal peptidase, peptidase S26 JKF54_05605 PF02780 Transketolase, C-terminal domain JKF54_05605 PF00364 Biotin-requiring enzyme JKF54_05605 PF02779 Transketolase, pyrimidine binding domain JKF54_05615 PF17755 UvrA DNA-binding domain JKF54_05615 PF17760 UvrA interaction domain JKF54_05630 PF00004 ATPase family associated with various cellular activities (AAA) JKF54_05630 PF01434 Peptidase family M41 JKF54_05630 PF17862 AAA+ lid domain JKF54_05680 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JKF54_05680 PF04055 Radical SAM superfamily JKF54_05685 PF00830 Ribosomal L28 family JKF54_05705 PF00163 Ribosomal protein S4/S9 N-terminal domain JKF54_05705 PF01479 S4 domain JKF54_05710 PF00456 Transketolase, thiamine diphosphate binding domain JKF54_05710 PF02779 Transketolase, pyrimidine binding domain JKF54_05710 PF02780 Transketolase, C-terminal domain JKF54_05730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JKF54_05730 PF14572 Phosphoribosyl synthetase-associated domain JKF54_05735 PF02686 Glu-tRNAGln amidotransferase C subunit JKF54_05740 PF07676 WD40-like Beta Propeller Repeat JKF54_05745 PF17770 Ribonuclease J C-terminal domain JKF54_05745 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JKF54_05745 PF12706 Beta-lactamase superfamily domain JKF54_05750 PF01556 DnaJ C terminal domain JKF54_05750 PF00226 DnaJ domain JKF54_05750 PF00684 DnaJ central domain JKF54_05765 PF00586 AIR synthase related protein, N-terminal domain JKF54_05765 PF02769 AIR synthase related protein, C-terminal domain JKF54_05765 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JKF54_05770 PF12705 PD-(D/E)XK nuclease superfamily JKF54_05780 PF10415 Fumarase C C-terminus JKF54_05780 PF00206 Lyase JKF54_05805 PF00210 Ferritin-like domain JKF54_05810 PF02104 SURF1 family JKF54_05815 PF02875 Mur ligase family, glutamate ligase domain JKF54_05815 PF01225 Mur ligase family, catalytic domain JKF54_05815 PF08245 Mur ligase middle domain JKF54_05825 PF00113 Enolase, C-terminal TIM barrel domain JKF54_05825 PF03952 Enolase, N-terminal domain JKF54_05830 PF01018 GTP1/OBG JKF54_05830 PF01926 50S ribosome-binding GTPase JKF54_05850 PF02325 YGGT family JKF54_05855 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JKF54_05855 PF17854 FtsK alpha domain JKF54_05855 PF09397 Ftsk gamma domain JKF54_05855 PF01580 FtsK/SpoIIIE family JKF54_05870 PF04551 GcpE protein JKF54_05885 PF01258 Prokaryotic dksA/traR C4-type zinc finger JKF54_05895 PF00596 Class II Aldolase and Adducin N-terminal domain JKF54_05905 PF00814 Glycoprotease family JKF54_05915 PF08241 Methyltransferase domain JKF54_05920 PF01807 CHC2 zinc finger JKF54_05920 PF08275 DNA primase catalytic core, N-terminal domain JKF54_05920 PF13662 Toprim domain JKF54_05930 PF00111 2Fe-2S iron-sulfur cluster binding domain JKF54_05940 PF03918 Cytochrome C biogenesis protein JKF54_05945 PF12705 PD-(D/E)XK nuclease superfamily JKF54_05945 PF00580 UvrD/REP helicase N-terminal domain JKF54_05945 PF13361 UvrD-like helicase C-terminal domain JKF54_05950 PF00288 GHMP kinases N terminal domain JKF54_05950 PF08544 GHMP kinases C terminal JKF54_05960 PF00950 ABC 3 transport family JKF54_05975 PF00749 tRNA synthetases class I (E and Q), catalytic domain JKF54_05980 PF00679 Elongation factor G C-terminus JKF54_05980 PF00009 Elongation factor Tu GTP binding domain JKF54_05980 PF03144 Elongation factor Tu domain 2 JKF54_05985 PF12627 Probable RNA and SrmB- binding site of polymerase A JKF54_05985 PF13735 tRNA nucleotidyltransferase domain 2 putative JKF54_05985 PF01743 Poly A polymerase head domain JKF54_06015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JKF54_06015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JKF54_06020 PF00902 Sec-independent protein translocase protein (TatC) JKF54_06030 PF01348 Type II intron maturase JKF54_06030 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JKF54_06065 PF07517 SecA DEAD-like domain JKF54_06065 PF01043 SecA preprotein cross-linking domain JKF54_06065 PF02810 SEC-C motif JKF54_06065 PF07516 SecA Wing and Scaffold domain