locus-tag class description CO539_000005 PF01208 Uroporphyrinogen decarboxylase (URO-D) CO539_000015 PF00893 Small Multidrug Resistance protein CO539_000030 PF00464 Serine hydroxymethyltransferase CO539_000035 PF00162 Phosphoglycerate kinase CO539_000050 PF00834 Ribulose-phosphate 3 epimerase family CO539_000060 PF00312 Ribosomal protein S15 CO539_000065 PF01509 TruB family pseudouridylate synthase (N terminal domain) CO539_000065 PF16198 tRNA pseudouridylate synthase B C-terminal domain CO539_000070 PF13333 Integrase core domain CO539_000070 PF13276 HTH-like domain CO539_000070 PF00665 Integrase core domain CO539_000075 PF01527 Transposase CO539_000085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_000090 PF01872 RibD C-terminal domain CO539_000090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO539_000095 PF13286 Phosphohydrolase-associated domain CO539_000095 PF01966 HD domain CO539_000100 PF01521 Iron-sulphur cluster biosynthesis CO539_000105 PF00005 ABC transporter CO539_000115 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO539_000120 PF00266 Aminotransferase class-V CO539_000125 PF01027 Inhibitor of apoptosis-promoting Bax1 CO539_000130 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CO539_000145 PF00107 Zinc-binding dehydrogenase CO539_000145 PF08240 Alcohol dehydrogenase GroES-like domain CO539_000150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_000175 PF02401 LytB protein CO539_000200 PF00436 Single-strand binding protein family CO539_000205 PF00701 Dihydrodipicolinate synthetase family CO539_000220 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_000230 PF01926 50S ribosome-binding GTPase CO539_000230 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CO539_000240 PF01039 Carboxyl transferase domain CO539_000290 PF00579 tRNA synthetases class I (W and Y) CO539_000305 PF00171 Aldehyde dehydrogenase family CO539_000315 PF00293 NUDIX domain CO539_000320 PF01026 TatD related DNase CO539_000325 PF00056 lactate/malate dehydrogenase, NAD binding domain CO539_000325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CO539_000330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CO539_000335 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CO539_000340 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CO539_000345 PF01230 HIT domain CO539_000360 PF01225 Mur ligase family, catalytic domain CO539_000360 PF02875 Mur ligase family, glutamate ligase domain CO539_000360 PF08245 Mur ligase middle domain CO539_000365 PF08338 Domain of unknown function (DUF1731) CO539_000365 PF01370 NAD dependent epimerase/dehydratase family CO539_000375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO539_000375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO539_000380 PF02504 Fatty acid synthesis protein CO539_000385 PF01783 Ribosomal L32p protein family CO539_000390 PF02405 Permease MlaE CO539_000395 PF00005 ABC transporter CO539_000400 PF02881 SRP54-type protein, helical bundle domain CO539_000400 PF02978 Signal peptide binding domain CO539_000400 PF00448 SRP54-type protein, GTPase domain CO539_000415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_000420 PF07977 FabA-like domain CO539_000430 PF01103 Surface antigen CO539_000430 PF07244 Surface antigen variable number repeat CO539_000435 PF02163 Peptidase family M50 CO539_000435 PF17820 PDZ domain CO539_000450 PF00216 Bacterial DNA-binding protein CO539_000455 PF00575 S1 RNA binding domain CO539_000460 PF02390 Putative methyltransferase CO539_000480 PF13333 Integrase core domain CO539_000480 PF00665 Integrase core domain CO539_000480 PF13276 HTH-like domain CO539_000500 PF01678 Diaminopimelate epimerase CO539_000505 PF00549 CoA-ligase CO539_000505 PF02629 CoA binding domain CO539_000510 PF08442 ATP-grasp domain CO539_000510 PF00549 CoA-ligase CO539_000525 PF04452 RNA methyltransferase CO539_000545 PF01218 Coproporphyrinogen III oxidase CO539_000550 PF13188 PAS domain CO539_000550 PF00072 Response regulator receiver domain CO539_000550 PF08448 PAS fold CO539_000550 PF00512 His Kinase A (phospho-acceptor) domain CO539_000550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO539_000555 PF13614 AAA domain CO539_000560 PF17762 HTH domain found in ParB protein CO539_000560 PF02195 ParB-like nuclease domain CO539_000565 PF02542 YgbB family CO539_000565 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CO539_000580 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_000590 PF01782 RimM N-terminal domain CO539_000590 PF05239 PRC-barrel domain CO539_000595 PF08207 Elongation factor P (EF-P) KOW-like domain CO539_000595 PF01132 Elongation factor P (EF-P) OB domain CO539_000595 PF09285 Elongation factor P, C-terminal CO539_000605 PF00155 Aminotransferase class I and II CO539_000615 PF00183 Hsp90 protein CO539_000630 PF02132 RecR protein CO539_000630 PF13662 Toprim domain CO539_000650 PF00270 DEAD/DEAH box helicase CO539_000650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CO539_000650 PF18074 Primosomal protein N C-terminal domain CO539_000650 PF17764 3′ DNA-binding domain (3′BD) CO539_000650 PF00271 Helicase conserved C-terminal domain CO539_000660 PF13606 Ankyrin repeat CO539_000660 PF12796 Ankyrin repeats (3 copies) CO539_000665 PF02511 Thymidylate synthase complementing protein CO539_000670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CO539_000675 PF02801 Beta-ketoacyl synthase, C-terminal domain CO539_000675 PF00109 Beta-ketoacyl synthase, N-terminal domain CO539_000680 PF00550 Phosphopantetheine attachment site CO539_000685 PF00348 Polyprenyl synthetase CO539_000695 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_000695 PF07724 AAA domain (Cdc48 subfamily) CO539_000695 PF00004 ATPase family associated with various cellular activities (AAA) CO539_000700 PF00227 Proteasome subunit CO539_000715 PF00762 Ferrochelatase CO539_000725 PF00334 Nucleoside diphosphate kinase CO539_000730 PF00202 Aminotransferase class-III CO539_000735 PF01595 Cyclin M transmembrane N-terminal domain CO539_000735 PF03471 Transporter associated domain CO539_000735 PF00571 CBS domain CO539_000740 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CO539_000745 PF02441 Flavoprotein CO539_000750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO539_000750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO539_000765 PF08264 Anticodon-binding domain of tRNA CO539_000765 PF13603 Leucyl-tRNA synthetase, Domain 2 CO539_000765 PF09334 tRNA synthetases class I (M) CO539_000765 PF00133 tRNA synthetases class I (I, L, M and V) CO539_000770 PF01551 Peptidase family M23 CO539_000775 PF13411 MerR HTH family regulatory protein CO539_000780 PF00216 Bacterial DNA-binding protein CO539_000870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_000885 PF03099 Biotin/lipoate A/B protein ligase family CO539_000890 PF17676 LD-carboxypeptidase C-terminal domain CO539_000890 PF02016 LD-carboxypeptidase N-terminal domain CO539_000900 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO539_000900 PF14579 Helix-hairpin-helix motif CO539_000900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO539_000900 PF02811 PHP domain CO539_000905 PF01250 Ribosomal protein S6 CO539_000910 PF01084 Ribosomal protein S18 CO539_000915 PF01281 Ribosomal protein L9, N-terminal domain CO539_000915 PF03948 Ribosomal protein L9, C-terminal domain CO539_000920 PF00206 Lyase CO539_000920 PF10397 Adenylosuccinate lyase C-terminus CO539_000935 PF13333 Integrase core domain CO539_000935 PF00665 Integrase core domain CO539_000935 PF13276 HTH-like domain CO539_000940 PF01527 Transposase CO539_000945 PF13685 Iron-containing alcohol dehydrogenase CO539_000950 PF07687 Peptidase dimerisation domain CO539_000950 PF01546 Peptidase family M20/M25/M40 CO539_000990 PF00186 Dihydrofolate reductase CO539_000995 PF00809 Pterin binding enzyme CO539_000995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CO539_001000 PF02152 Dihydroneopterin aldolase CO539_001005 PF03070 TENA/THI-4/PQQC family CO539_001055 PF00085 Thioredoxin CO539_001060 PF01612 3'-5' exonuclease CO539_001060 PF00570 HRDC domain CO539_001075 PF07650 KH domain CO539_001075 PF01926 50S ribosome-binding GTPase CO539_001100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_001115 PF00032 Cytochrome b(C-terminal)/b6/petD CO539_001115 PF00033 Cytochrome b/b6/petB CO539_001120 PF00033 Cytochrome b/b6/petB CO539_001120 PF02167 Cytochrome C1 family CO539_001120 PF00032 Cytochrome b(C-terminal)/b6/petD CO539_001125 PF00271 Helicase conserved C-terminal domain CO539_001125 PF04851 Type III restriction enzyme, res subunit CO539_001125 PF02151 UvrB/uvrC motif CO539_001125 PF12344 Ultra-violet resistance protein B CO539_001125 PF17757 UvrB interaction domain CO539_001145 PF00226 DnaJ domain CO539_001145 PF01556 DnaJ C terminal domain CO539_001145 PF00684 DnaJ central domain CO539_001155 PF03129 Anticodon binding domain CO539_001155 PF13393 Histidyl-tRNA synthetase CO539_001160 PF01975 Survival protein SurE CO539_001170 PF13520 Amino acid permease CO539_001175 PF00324 Amino acid permease CO539_001185 PF01118 Semialdehyde dehydrogenase, NAD binding domain CO539_001185 PF02774 Semialdehyde dehydrogenase, dimerisation domain CO539_001190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CO539_001190 PF02222 ATP-grasp domain CO539_001195 PF04379 ApaG domain CO539_001200 PF00528 Binding-protein-dependent transport system inner membrane component CO539_001250 PF01921 tRNA synthetases class I (K) CO539_001260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO539_001265 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_001270 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_001275 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_001280 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_001315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_001320 PF01368 DHH family CO539_001320 PF02272 DHHA1 domain CO539_001320 PF17768 RecJ OB domain CO539_001325 PF04055 Radical SAM superfamily CO539_001325 PF01938 TRAM domain CO539_001325 PF00919 Uncharacterized protein family UPF0004 CO539_001330 PF08264 Anticodon-binding domain of tRNA CO539_001330 PF00133 tRNA synthetases class I (I, L, M and V) CO539_001340 PF03484 tRNA synthetase B5 domain CO539_001340 PF03483 B3/4 domain CO539_001340 PF01588 Putative tRNA binding domain CO539_001340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CO539_001340 PF03147 Ferredoxin-fold anticodon binding domain CO539_001350 PF00119 ATP synthase A chain CO539_001355 PF00137 ATP synthase subunit C CO539_001375 PF02628 Cytochrome oxidase assembly protein CO539_001380 PF02785 Biotin carboxylase C-terminal domain CO539_001380 PF00289 Biotin carboxylase, N-terminal domain CO539_001380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO539_001390 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO539_001395 PF00011 Hsp20/alpha crystallin family CO539_001400 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CO539_001410 PF00380 Ribosomal protein S9/S16 CO539_001415 PF00572 Ribosomal protein L13 CO539_001420 PF02321 Outer membrane efflux protein CO539_001425 PF10691 Protein of unknown function (DUF2497) CO539_001430 PF01728 FtsJ-like methyltransferase CO539_001455 PF01702 Queuine tRNA-ribosyltransferase CO539_001465 PF00675 Insulinase (Peptidase family M16) CO539_001465 PF05193 Peptidase M16 inactive domain CO539_001470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CO539_001470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CO539_001500 PF03023 Lipid II flippase MurJ CO539_001515 PF13932 GidA associated domain CO539_001515 PF01134 Glucose inhibited division protein A CO539_001520 PF00557 Metallopeptidase family M24 CO539_001520 PF01321 Creatinase/Prolidase N-terminal domain CO539_001555 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO539_001570 PF03060 Nitronate monooxygenase CO539_001580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CO539_001590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_001625 PF00486 Transcriptional regulatory protein, C terminal CO539_001625 PF00072 Response regulator receiver domain CO539_001630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CO539_001630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CO539_001635 PF04608 Phosphatidylglycerophosphatase A CO539_001650 PF13085 2Fe-2S iron-sulfur cluster binding domain CO539_001655 PF02130 Uncharacterized protein family UPF0054 CO539_001665 PF00091 Tubulin/FtsZ family, GTPase domain CO539_001665 PF12327 FtsZ family, C-terminal domain CO539_001690 PF01522 Polysaccharide deacetylase CO539_001695 PF03717 Penicillin-binding Protein dimerisation domain CO539_001695 PF00905 Penicillin binding protein transpeptidase domain CO539_001700 PF02190 ATP-dependent protease La (LON) substrate-binding domain CO539_001700 PF05362 Lon protease (S16) C-terminal proteolytic domain CO539_001700 PF00004 ATPase family associated with various cellular activities (AAA) CO539_001705 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_001705 PF07724 AAA domain (Cdc48 subfamily) CO539_001705 PF06689 ClpX C4-type zinc finger CO539_001710 PF00574 Clp protease CO539_001715 PF05698 Bacterial trigger factor protein (TF) C-terminus CO539_001715 PF05697 Bacterial trigger factor protein (TF) CO539_001715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CO539_001725 PF04972 BON domain CO539_001740 PF05175 Methyltransferase small domain CO539_001740 PF02390 Putative methyltransferase CO539_001740 PF17827 PrmC N-terminal domain CO539_001745 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_001755 PF00164 Ribosomal protein S12/S23 CO539_001760 PF00177 Ribosomal protein S7p/S5e CO539_001765 PF03764 Elongation factor G, domain IV CO539_001765 PF00679 Elongation factor G C-terminus CO539_001765 PF00009 Elongation factor Tu GTP binding domain CO539_001765 PF03144 Elongation factor Tu domain 2 CO539_001765 PF14492 Elongation Factor G, domain II CO539_001770 PF03144 Elongation factor Tu domain 2 CO539_001770 PF00009 Elongation factor Tu GTP binding domain CO539_001770 PF03143 Elongation factor Tu C-terminal domain CO539_001785 PF02357 Transcription termination factor nusG CO539_001785 PF00467 KOW motif CO539_001790 PF00298 Ribosomal protein L11, RNA binding domain CO539_001790 PF03946 Ribosomal protein L11, N-terminal domain CO539_001795 PF00687 Ribosomal protein L1p/L10e family CO539_001800 PF00466 Ribosomal protein L10 CO539_001810 PF04561 RNA polymerase Rpb2, domain 2 CO539_001810 PF04563 RNA polymerase beta subunit CO539_001810 PF04560 RNA polymerase Rpb2, domain 7 CO539_001810 PF04997 RNA polymerase Rpb1, domain 1 CO539_001810 PF00562 RNA polymerase Rpb2, domain 6 CO539_001810 PF04998 RNA polymerase Rpb1, domain 5 CO539_001810 PF10385 RNA polymerase beta subunit external 1 domain CO539_001810 PF05000 RNA polymerase Rpb1, domain 4 CO539_001810 PF04983 RNA polymerase Rpb1, domain 3 CO539_001810 PF00623 RNA polymerase Rpb1, domain 2 CO539_001810 PF04565 RNA polymerase Rpb2, domain 3 CO539_001815 PF01207 Dihydrouridine synthase (Dus) CO539_001830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CO539_001830 PF02843 Phosphoribosylglycinamide synthetase, C domain CO539_001830 PF02844 Phosphoribosylglycinamide synthetase, N domain CO539_001840 PF18324 Hypothetical protein TT1725 CO539_001840 PF00180 Isocitrate/isopropylmalate dehydrogenase CO539_001850 PF01527 Transposase CO539_001885 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_001935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CO539_001935 PF14602 Hexapeptide repeat of succinyl-transferase CO539_001935 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_001945 PF00890 FAD binding domain CO539_001945 PF02910 Fumarate reductase flavoprotein C-term CO539_001955 PF00625 Guanylate kinase CO539_001970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO539_001970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO539_001975 PF13416 Bacterial extracellular solute-binding protein CO539_001995 PF01513 ATP-NAD kinase CO539_002000 PF01197 Ribosomal protein L31 CO539_002005 PF00698 Acyl transferase domain CO539_002015 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CO539_002015 PF01676 Metalloenzyme superfamily CO539_002030 PF01411 tRNA synthetases class II (A) CO539_002030 PF02272 DHHA1 domain CO539_002030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO539_002050 PF01632 Ribosomal protein L35 CO539_002055 PF00453 Ribosomal protein L20 CO539_002060 PF02911 Formyl transferase, C-terminal domain CO539_002060 PF00551 Formyl transferase CO539_002070 PF01808 AICARFT/IMPCHase bienzyme CO539_002070 PF02142 MGS-like domain CO539_002090 PF00730 HhH-GPD superfamily base excision DNA repair protein CO539_002090 PF10576 Iron-sulfur binding domain of endonuclease III CO539_002090 PF00633 Helix-hairpin-helix motif CO539_002105 PF08245 Mur ligase middle domain CO539_002120 PF08245 Mur ligase middle domain CO539_002120 PF02875 Mur ligase family, glutamate ligase domain CO539_002135 PF03364 Polyketide cyclase / dehydrase and lipid transport CO539_002140 PF13462 Thioredoxin CO539_002170 PF12169 DNA polymerase III subunits gamma and tau domain III CO539_002175 PF02575 YbaB/EbfC DNA-binding family CO539_002180 PF13505 Outer membrane protein beta-barrel domain CO539_002185 PF00140 Sigma-70 factor, region 1.2 CO539_002185 PF04545 Sigma-70, region 4 CO539_002185 PF04542 Sigma-70 region 2 CO539_002195 PF02768 DNA polymerase III beta subunit, C-terminal domain CO539_002195 PF00712 DNA polymerase III beta subunit, N-terminal domain CO539_002195 PF02767 DNA polymerase III beta subunit, central domain CO539_002200 PF01416 tRNA pseudouridine synthase CO539_002205 PF00154 recA bacterial DNA recombination protein CO539_002215 PF01195 Peptidyl-tRNA hydrolase CO539_002220 PF01386 Ribosomal L25p family CO539_002220 PF14693 Ribosomal protein TL5, C-terminal domain CO539_002240 PF01795 MraW methylase family CO539_002245 PF00083 Sugar (and other) transporter CO539_002245 PF07690 Major Facilitator Superfamily CO539_002250 PF00557 Metallopeptidase family M24 CO539_002255 PF02491 SHS2 domain inserted in FTSA CO539_002260 PF01327 Polypeptide deformylase CO539_002265 PF03167 Uracil DNA glycosylase superfamily CO539_002280 PF00156 Phosphoribosyl transferase domain CO539_002280 PF13537 Glutamine amidotransferase domain CO539_002295 PF03631 Virulence factor BrkB CO539_002305 PF02142 MGS-like domain CO539_002305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CO539_002305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO539_002315 PF00849 RNA pseudouridylate synthase CO539_002325 PF00753 Metallo-beta-lactamase superfamily CO539_002325 PF03772 Competence protein CO539_002345 PF02223 Thymidylate kinase CO539_002355 PF02254 TrkA-N domain CO539_002355 PF00999 Sodium/hydrogen exchanger family CO539_002360 PF13840 ACT domain CO539_002360 PF01842 ACT domain CO539_002360 PF00696 Amino acid kinase family CO539_002365 PF02463 RecF/RecN/SMC N terminal domain CO539_002370 PF00578 AhpC/TSA family CO539_002375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CO539_002375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CO539_002380 PF04101 Glycosyltransferase family 28 C-terminal domain CO539_002380 PF03033 Glycosyltransferase family 28 N-terminal domain CO539_002390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_002390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO539_002410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_002435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_002440 PF09312 SurA N-terminal domain CO539_002450 PF00719 Inorganic pyrophosphatase CO539_002475 PF00691 OmpA family CO539_002480 PF01171 PP-loop family CO539_002485 PF01434 Peptidase family M41 CO539_002485 PF06480 FtsH Extracellular CO539_002485 PF17862 AAA+ lid domain CO539_002485 PF00004 ATPase family associated with various cellular activities (AAA) CO539_002490 PF00004 ATPase family associated with various cellular activities (AAA) CO539_002490 PF01434 Peptidase family M41 CO539_002490 PF17862 AAA+ lid domain CO539_002490 PF06480 FtsH Extracellular CO539_002500 PF06480 FtsH Extracellular CO539_002500 PF01434 Peptidase family M41 CO539_002500 PF17862 AAA+ lid domain CO539_002500 PF00004 ATPase family associated with various cellular activities (AAA) CO539_002525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO539_002525 PF00364 Biotin-requiring enzyme CO539_002525 PF02817 e3 binding domain CO539_002555 PF00005 ABC transporter CO539_002555 PF00664 ABC transporter transmembrane region CO539_002565 PF00814 Glycoprotease family CO539_002575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO539_002575 PF00512 His Kinase A (phospho-acceptor) domain CO539_002575 PF00989 PAS fold CO539_002575 PF13188 PAS domain CO539_002575 PF13426 PAS domain CO539_002580 PF00202 Aminotransferase class-III CO539_002595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_002610 PF01594 AI-2E family transporter CO539_002620 PF02899 Phage integrase, N-terminal SAM-like domain CO539_002620 PF00589 Phage integrase family CO539_002630 PF01649 Ribosomal protein S20 CO539_002635 PF00285 Citrate synthase, C-terminal domain CO539_002665 PF05496 Holliday junction DNA helicase RuvB P-loop domain CO539_002665 PF05491 RuvB C-terminal winged helix domain CO539_002665 PF17864 RuvB AAA lid domain CO539_002670 PF01330 RuvA N terminal domain CO539_002670 PF07499 RuvA, C-terminal domain CO539_002675 PF00034 Cytochrome c CO539_002685 PF13361 UvrD-like helicase C-terminal domain CO539_002685 PF00580 UvrD/REP helicase N-terminal domain CO539_002695 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CO539_002700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO539_002710 PF00361 Proton-conducting membrane transporter CO539_002715 PF00361 Proton-conducting membrane transporter CO539_002720 PF03099 Biotin/lipoate A/B protein ligase family CO539_002720 PF02237 Biotin protein ligase C terminal domain CO539_002725 PF03100 CcmE CO539_002800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_002830 PF00004 ATPase family associated with various cellular activities (AAA) CO539_002830 PF17871 AAA lid domain CO539_002830 PF02861 Clp amino terminal domain, pathogenicity island component CO539_002830 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_002830 PF07724 AAA domain (Cdc48 subfamily) CO539_002835 PF05088 Bacterial NAD-glutamate dehydrogenase CO539_002845 PF00990 Diguanylate cyclase, GGDEF domain CO539_002845 PF00072 Response regulator receiver domain CO539_002850 PF11967 Recombination protein O N terminal CO539_002850 PF02565 Recombination protein O C terminal CO539_002890 PF00772 DnaB-like helicase N terminal domain CO539_002890 PF03796 DnaB-like helicase C terminal domain CO539_002915 PF01040 UbiA prenyltransferase family CO539_002920 PF02033 Ribosome-binding factor A CO539_002925 PF04760 Translation initiation factor IF-2, N-terminal region CO539_002925 PF11987 Translation-initiation factor 2 CO539_002925 PF00009 Elongation factor Tu GTP binding domain CO539_002930 PF13184 NusA-like KH domain CO539_002930 PF08529 NusA N-terminal domain CO539_002930 PF00575 S1 RNA binding domain CO539_002955 PF00120 Glutamine synthetase, catalytic domain CO539_002960 PF00308 Bacterial dnaA protein CO539_002960 PF08299 Bacterial dnaA protein helix-turn-helix CO539_002960 PF11638 DnaA N-terminal domain CO539_002965 PF07549 SecD/SecF GG Motif CO539_002965 PF02355 Protein export membrane protein CO539_002980 PF02096 60Kd inner membrane protein CO539_002980 PF14849 YidC periplasmic domain CO539_002985 PF00885 6,7-dimethyl-8-ribityllumazine synthase CO539_002990 PF01029 NusB family CO539_003000 PF00692 dUTPase CO539_003010 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003020 PF10417 C-terminal domain of 1-Cys peroxiredoxin CO539_003020 PF00578 AhpC/TSA family CO539_003025 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_003035 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003100 PF03109 ABC1 family CO539_003105 PF00005 ABC transporter CO539_003110 PF01297 Zinc-uptake complex component A periplasmic CO539_003125 PF00471 Ribosomal protein L33 CO539_003130 PF00575 S1 RNA binding domain CO539_003130 PF10150 Ribonuclease E/G family CO539_003130 PF12111 Polyribonucleotide phosphorylase C terminal CO539_003135 PF00012 Hsp70 protein CO539_003140 PF01722 BolA-like protein CO539_003145 PF01053 Cys/Met metabolism PLP-dependent enzyme CO539_003150 PF08245 Mur ligase middle domain CO539_003150 PF02875 Mur ligase family, glutamate ligase domain CO539_003165 PF01300 Telomere recombination CO539_003170 PF12169 DNA polymerase III subunits gamma and tau domain III CO539_003185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO539_003185 PF13244 Domain of unknown function (DUF4040) CO539_003185 PF00361 Proton-conducting membrane transporter CO539_003190 PF03796 DnaB-like helicase C terminal domain CO539_003190 PF00772 DnaB-like helicase N terminal domain CO539_003200 PF06271 RDD family CO539_003220 PF01979 Amidohydrolase family CO539_003225 PF00570 HRDC domain CO539_003225 PF01612 3'-5' exonuclease CO539_003230 PF01121 Dephospho-CoA kinase CO539_003240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003280 PF12796 Ankyrin repeats (3 copies) CO539_003285 PF00268 Ribonucleotide reductase, small chain CO539_003300 PF09334 tRNA synthetases class I (M) CO539_003300 PF08264 Anticodon-binding domain of tRNA CO539_003305 PF01527 Transposase CO539_003310 PF13276 HTH-like domain CO539_003310 PF00665 Integrase core domain CO539_003310 PF13333 Integrase core domain CO539_003320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003350 PF00902 Sec-independent protein translocase protein (TatC) CO539_003355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CO539_003355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO539_003375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003395 PF13735 tRNA nucleotidyltransferase domain 2 putative CO539_003395 PF12627 Probable RNA and SrmB- binding site of polymerase A CO539_003395 PF01743 Poly A polymerase head domain CO539_003405 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO539_003420 PF00950 ABC 3 transport family CO539_003430 PF08544 GHMP kinases C terminal CO539_003430 PF00288 GHMP kinases N terminal domain CO539_003435 PF00580 UvrD/REP helicase N-terminal domain CO539_003435 PF12705 PD-(D/E)XK nuclease superfamily CO539_003435 PF13361 UvrD-like helicase C-terminal domain CO539_003475 PF00111 2Fe-2S iron-sulfur cluster binding domain CO539_003490 PF08275 DNA primase catalytic core, N-terminal domain CO539_003490 PF13662 Toprim domain CO539_003490 PF01807 CHC2 zinc finger CO539_003495 PF08241 Methyltransferase domain CO539_003505 PF00814 Glycoprotease family CO539_003530 PF01258 Prokaryotic dksA/traR C4-type zinc finger CO539_003535 PF00226 DnaJ domain CO539_003535 PF01556 DnaJ C terminal domain CO539_003535 PF00684 DnaJ central domain CO539_003545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003560 PF01225 Mur ligase family, catalytic domain CO539_003560 PF02875 Mur ligase family, glutamate ligase domain CO539_003560 PF08245 Mur ligase middle domain CO539_003565 PF03330 Lytic transglycolase CO539_003575 PF01494 FAD binding domain CO539_003590 PF01467 Cytidylyltransferase-like CO539_003605 PF01255 Putative undecaprenyl diphosphate synthase CO539_003615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO539_003615 PF00364 Biotin-requiring enzyme CO539_003615 PF02817 e3 binding domain CO539_003620 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003655 PF01926 50S ribosome-binding GTPase CO539_003655 PF06071 Protein of unknown function (DUF933) CO539_003665 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CO539_003680 PF00005 ABC transporter CO539_003685 PF02416 mttA/Hcf106 family CO539_003695 PF06055 Exopolysaccharide synthesis, ExoD CO539_003700 PF01406 tRNA synthetases class I (C) catalytic domain CO539_003700 PF09190 DALR domain CO539_003715 PF00075 RNase H CO539_003720 PF01040 UbiA prenyltransferase family CO539_003725 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO539_003730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CO539_003730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CO539_003735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO539_003735 PF00529 HlyD membrane-fusion protein of T1SS CO539_003745 PF00676 Dehydrogenase E1 component CO539_003750 PF02637 GatB domain CO539_003750 PF02934 GatB/GatE catalytic domain CO539_003765 PF00589 Phage integrase family CO539_003765 PF02899 Phage integrase, N-terminal SAM-like domain CO539_003770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO539_003770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_003780 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO539_003790 PF00133 tRNA synthetases class I (I, L, M and V) CO539_003790 PF08264 Anticodon-binding domain of tRNA CO539_003805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CO539_003830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003850 PF05173 Dihydrodipicolinate reductase, C-terminus CO539_003850 PF01113 Dihydrodipicolinate reductase, N-terminus CO539_003855 PF00005 ABC transporter CO539_003875 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CO539_003875 PF13288 DXP reductoisomerase C-terminal domain CO539_003875 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CO539_003890 PF01527 Transposase CO539_003900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003910 PF13333 Integrase core domain CO539_003910 PF00665 Integrase core domain CO539_003910 PF13276 HTH-like domain CO539_003920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO539_003920 PF03129 Anticodon binding domain CO539_003925 PF01648 4'-phosphopantetheinyl transferase superfamily CO539_003950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_003990 PF01235 Sodium:alanine symporter family CO539_004005 PF02545 Maf-like protein CO539_004010 PF01176 Translation initiation factor 1A / IF-1 CO539_004020 PF00709 Adenylosuccinate synthetase CO539_004035 PF00696 Amino acid kinase family CO539_004040 PF01926 50S ribosome-binding GTPase CO539_004045 PF03462 PCRF domain CO539_004045 PF00472 RF-1 domain CO539_004080 PF07690 Major Facilitator Superfamily CO539_004095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_004105 PF04551 GcpE protein CO539_004110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_004135 PF01580 FtsK/SpoIIIE family CO539_004135 PF09397 Ftsk gamma domain CO539_004135 PF17854 FtsK alpha domain CO539_004135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CO539_004140 PF02325 YGGT family CO539_004145 PF01527 Transposase CO539_004150 PF13333 Integrase core domain CO539_004150 PF13276 HTH-like domain CO539_004150 PF00665 Integrase core domain CO539_004165 PF13276 HTH-like domain CO539_004165 PF00665 Integrase core domain CO539_004165 PF13333 Integrase core domain CO539_004170 PF01527 Transposase CO539_004175 PF01018 GTP1/OBG CO539_004175 PF01926 50S ribosome-binding GTPase CO539_004180 PF03952 Enolase, N-terminal domain CO539_004180 PF00113 Enolase, C-terminal TIM barrel domain CO539_004190 PF01225 Mur ligase family, catalytic domain CO539_004190 PF02875 Mur ligase family, glutamate ligase domain CO539_004190 PF08245 Mur ligase middle domain CO539_004195 PF02104 SURF1 family CO539_004200 PF00210 Ferritin-like domain CO539_004235 PF00206 Lyase CO539_004235 PF10415 Fumarase C C-terminus CO539_004250 PF00586 AIR synthase related protein, N-terminal domain CO539_004250 PF02769 AIR synthase related protein, C-terminal domain CO539_004250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CO539_004270 PF00226 DnaJ domain CO539_004270 PF01556 DnaJ C terminal domain CO539_004270 PF00684 DnaJ central domain CO539_004275 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CO539_004275 PF17770 Ribonuclease J C-terminal domain CO539_004275 PF12706 Beta-lactamase superfamily domain CO539_004285 PF07676 WD40-like Beta Propeller Repeat CO539_004290 PF02686 Glu-tRNAGln amidotransferase C subunit CO539_004295 PF14572 Phosphoribosyl synthetase-associated domain CO539_004295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CO539_004300 PF02780 Transketolase, C-terminal domain CO539_004300 PF02779 Transketolase, pyrimidine binding domain CO539_004300 PF00456 Transketolase, thiamine diphosphate binding domain CO539_004305 PF01479 S4 domain CO539_004305 PF00163 Ribosomal protein S4/S9 N-terminal domain CO539_004315 PF04384 Iron-sulphur cluster assembly CO539_004325 PF00830 Ribosomal L28 family CO539_004330 PF04055 Radical SAM superfamily CO539_004330 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CO539_004340 PF00929 Exonuclease CO539_004365 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_004390 PF01434 Peptidase family M41 CO539_004390 PF00004 ATPase family associated with various cellular activities (AAA) CO539_004390 PF06480 FtsH Extracellular CO539_004390 PF17862 AAA+ lid domain CO539_004420 PF02779 Transketolase, pyrimidine binding domain CO539_004420 PF00364 Biotin-requiring enzyme CO539_004420 PF02780 Transketolase, C-terminal domain CO539_004430 PF10502 Signal peptidase, peptidase S26 CO539_004435 PF00012 Hsp70 protein CO539_004440 PF07743 HSCB C-terminal oligomerisation domain CO539_004440 PF00226 DnaJ domain CO539_004445 PF01521 Iron-sulphur cluster biosynthesis CO539_004450 PF01592 NifU-like N terminal domain CO539_004455 PF00448 SRP54-type protein, GTPase domain CO539_004455 PF02881 SRP54-type protein, helical bundle domain CO539_004480 PF01571 Aminomethyltransferase folate-binding domain CO539_004485 PF00166 Chaperonin 10 Kd subunit CO539_004490 PF00118 TCP-1/cpn60 chaperonin family CO539_004505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_004515 PF18073 Rubredoxin metal binding domain CO539_004520 PF07690 Major Facilitator Superfamily CO539_004520 PF00083 Sugar (and other) transporter CO539_004530 PF13368 Topoisomerase C-terminal repeat CO539_004530 PF01751 Toprim domain CO539_004530 PF01396 Topoisomerase DNA binding C4 zinc finger CO539_004530 PF01131 DNA topoisomerase CO539_004550 PF02534 Type IV secretory system Conjugative DNA transfer CO539_004555 PF00437 Type II/IV secretion system protein CO539_004570 PF04335 VirB8 protein CO539_004575 PF00925 GTP cyclohydrolase II CO539_004595 PF00692 dUTPase CO539_004600 PF02386 Cation transport protein CO539_004615 PF01765 Ribosome recycling factor CO539_004625 PF00889 Elongation factor TS CO539_004630 PF00318 Ribosomal protein S2 CO539_004640 PF02699 Preprotein translocase subunit CO539_004645 PF01380 SIS domain CO539_004675 PF00117 Glutamine amidotransferase class-I CO539_004675 PF06418 CTP synthase N-terminus CO539_004685 PF14437 MafB19-like deaminase CO539_004695 PF00005 ABC transporter CO539_004700 PF03485 Arginyl tRNA synthetase N terminal domain CO539_004700 PF05746 DALR anticodon binding domain CO539_004700 PF00750 tRNA synthetases class I (R) CO539_004715 PF00664 ABC transporter transmembrane region CO539_004715 PF00005 ABC transporter CO539_004720 PF01209 ubiE/COQ5 methyltransferase family CO539_004725 PF07690 Major Facilitator Superfamily CO539_004760 PF00462 Glutaredoxin CO539_004770 PF01515 Phosphate acetyl/butaryl transferase CO539_004770 PF03949 Malic enzyme, NAD binding domain CO539_004770 PF00390 Malic enzyme, N-terminal domain CO539_004775 PF01066 CDP-alcohol phosphatidyltransferase CO539_004790 PF01709 Transcriptional regulator CO539_004795 PF01551 Peptidase family M23 CO539_004795 PF08525 Opacity-associated protein A N-terminal motif CO539_004795 PF01476 LysM domain CO539_004830 PF02896 PEP-utilising enzyme, TIM barrel domain CO539_004830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CO539_004830 PF00391 PEP-utilising enzyme, mobile domain CO539_004835 PF04002 RadC-like JAB domain CO539_004950 PF03449 Transcription elongation factor, N-terminal CO539_004950 PF01272 Transcription elongation factor, GreA/GreB, C-term CO539_004955 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO539_004955 PF00306 ATP synthase alpha/beta chain, C terminal domain CO539_004955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_004960 PF00213 ATP synthase delta (OSCP) subunit CO539_004965 PF02021 Uncharacterised protein family UPF0102 CO539_004970 PF01196 Ribosomal protein L17 CO539_004975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CO539_004975 PF01000 RNA polymerase Rpb3/RpoA insert domain CO539_004975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CO539_004980 PF00411 Ribosomal protein S11 CO539_004985 PF00416 Ribosomal protein S13/S18 CO539_004995 PF00344 SecY translocase CO539_005000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CO539_005005 PF00333 Ribosomal protein S5, N-terminal domain CO539_005005 PF03719 Ribosomal protein S5, C-terminal domain CO539_005010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CO539_005015 PF00347 Ribosomal protein L6 CO539_005020 PF00410 Ribosomal protein S8 CO539_005025 PF00253 Ribosomal protein S14p/S29e CO539_005030 PF00673 ribosomal L5P family C-terminus CO539_005030 PF00281 Ribosomal protein L5 CO539_005035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CO539_005040 PF00238 Ribosomal protein L14p/L23e CO539_005045 PF00366 Ribosomal protein S17 CO539_005050 PF00831 Ribosomal L29 protein CO539_005055 PF00252 Ribosomal protein L16p/L10e CO539_005060 PF00189 Ribosomal protein S3, C-terminal domain CO539_005060 PF07650 KH domain CO539_005065 PF00237 Ribosomal protein L22p/L17e CO539_005070 PF00203 Ribosomal protein S19 CO539_005075 PF03947 Ribosomal Proteins L2, C-terminal domain CO539_005075 PF00181 Ribosomal Proteins L2, RNA binding domain CO539_005080 PF00276 Ribosomal protein L23 CO539_005085 PF00573 Ribosomal protein L4/L1 family CO539_005090 PF00297 Ribosomal protein L3 CO539_005095 PF00338 Ribosomal protein S10p/S20e CO539_005100 PF03143 Elongation factor Tu C-terminal domain CO539_005100 PF03144 Elongation factor Tu domain 2 CO539_005100 PF00009 Elongation factor Tu GTP binding domain CO539_005115 PF00117 Glutamine amidotransferase class-I CO539_005115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CO539_005125 PF00923 Transaldolase/Fructose-6-phosphate aldolase CO539_005140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_005155 PF00829 Ribosomal prokaryotic L21 protein CO539_005160 PF01016 Ribosomal L27 protein CO539_005170 PF00438 S-adenosylmethionine synthetase, N-terminal domain CO539_005170 PF02772 S-adenosylmethionine synthetase, central domain CO539_005170 PF02773 S-adenosylmethionine synthetase, C-terminal domain CO539_005175 PF03070 TENA/THI-4/PQQC family CO539_005185 PF00510 Cytochrome c oxidase subunit III CO539_005190 PF02075 Crossover junction endodeoxyribonuclease RuvC CO539_005195 PF03652 Holliday junction resolvase CO539_005200 PF02867 Ribonucleotide reductase, barrel domain CO539_005200 PF03477 ATP cone domain CO539_005200 PF00317 Ribonucleotide reductase, all-alpha domain CO539_005225 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_005245 PF00468 Ribosomal protein L34 CO539_005250 PF00528 Binding-protein-dependent transport system inner membrane component CO539_005255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_005255 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO539_005260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CO539_005275 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_005295 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_005295 PF14602 Hexapeptide repeat of succinyl-transferase CO539_005295 PF12804 MobA-like NTP transferase domain CO539_005300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CO539_005300 PF01409 tRNA synthetases class II core domain (F) CO539_005310 PF00677 Lumazine binding domain CO539_005320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO539_005320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO539_005320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO539_005320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO539_005355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_005365 PF01367 5'-3' exonuclease, C-terminal SAM fold CO539_005365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CO539_005365 PF00476 DNA polymerase family A CO539_005370 PF01425 Amidase CO539_005395 PF02666 Phosphatidylserine decarboxylase CO539_005400 PF01066 CDP-alcohol phosphatidyltransferase CO539_005405 PF01235 Sodium:alanine symporter family CO539_005410 PF01235 Sodium:alanine symporter family CO539_005415 PF02660 Glycerol-3-phosphate acyltransferase CO539_005425 PF01545 Cation efflux family CO539_005450 PF08032 RNA 2'-O ribose methyltransferase substrate binding CO539_005450 PF00588 SpoU rRNA Methylase family CO539_005460 PF08459 UvrC Helix-hairpin-helix N-terminal CO539_005460 PF01541 GIY-YIG catalytic domain CO539_005460 PF02151 UvrB/uvrC motif CO539_005465 PF02092 Glycyl-tRNA synthetase beta subunit CO539_005465 PF05746 DALR anticodon binding domain CO539_005470 PF02091 Glycyl-tRNA synthetase alpha subunit CO539_005485 PF01527 Transposase CO539_005490 PF00665 Integrase core domain CO539_005490 PF13333 Integrase core domain CO539_005490 PF13276 HTH-like domain CO539_005495 PF00490 Delta-aminolevulinic acid dehydratase CO539_005500 PF00146 NADH dehydrogenase CO539_005505 PF00384 Molybdopterin oxidoreductase CO539_005505 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CO539_005505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CO539_005515 PF00883 Cytosol aminopeptidase family, catalytic domain CO539_005515 PF02789 Cytosol aminopeptidase family, N-terminal domain CO539_005525 PF00171 Aldehyde dehydrogenase family CO539_005525 PF01619 Proline dehydrogenase CO539_005525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CO539_005525 PF14850 DNA-binding domain of Proline dehydrogenase CO539_005530 PF00694 Aconitase C-terminal domain CO539_005530 PF00330 Aconitase family (aconitate hydratase) CO539_005535 PF02556 Preprotein translocase subunit SecB CO539_005545 PF00929 Exonuclease CO539_005550 PF02630 SCO1/SenC CO539_005560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_005575 PF00035 Double-stranded RNA binding motif CO539_005575 PF14622 Ribonuclease-III-like CO539_005580 PF01180 Dihydroorotate dehydrogenase CO539_005595 PF01791 DeoC/LacD family aldolase CO539_005605 PF00004 ATPase family associated with various cellular activities (AAA) CO539_005605 PF07724 AAA domain (Cdc48 subfamily) CO539_005605 PF17871 AAA lid domain CO539_005605 PF02861 Clp amino terminal domain, pathogenicity island component CO539_005605 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_005610 PF00270 DEAD/DEAH box helicase CO539_005610 PF00271 Helicase conserved C-terminal domain CO539_005615 PF00313 'Cold-shock' DNA-binding domain CO539_005620 PF01523 Putative modulator of DNA gyrase CO539_005625 PF00231 ATP synthase CO539_005640 PF02687 FtsX-like permease family CO539_005640 PF12704 MacB-like periplasmic core domain CO539_005665 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO539_005670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO539_005695 PF04546 Sigma-70, non-essential region CO539_005695 PF00140 Sigma-70 factor, region 1.2 CO539_005695 PF04542 Sigma-70 region 2 CO539_005695 PF03979 Sigma-70 factor, region 1.1 CO539_005695 PF04545 Sigma-70, region 4 CO539_005695 PF04539 Sigma-70 region 3 CO539_005700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO539_005710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO539_005710 PF13244 Domain of unknown function (DUF4040) CO539_005710 PF00361 Proton-conducting membrane transporter CO539_005725 PF01192 RNA polymerase Rpb6 CO539_005735 PF00731 AIR carboxylase CO539_005740 PF01119 DNA mismatch repair protein, C-terminal domain CO539_005740 PF08676 MutL C terminal dimerisation domain CO539_005750 PF01145 SPFH domain / Band 7 family CO539_005755 PF01145 SPFH domain / Band 7 family CO539_005760 PF13180 PDZ domain CO539_005875 PF00121 Triosephosphate isomerase CO539_005885 PF00398 Ribosomal RNA adenine dimethylase CO539_005890 PF00478 IMP dehydrogenase / GMP reductase domain CO539_005890 PF00571 CBS domain CO539_005895 PF07498 Rho termination factor, N-terminal domain CO539_005895 PF07497 Rho termination factor, RNA-binding domain CO539_005895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_005910 PF00886 Ribosomal protein S16 CO539_005915 PF00348 Polyprenyl synthetase CO539_005920 PF01025 GrpE CO539_005925 PF00579 tRNA synthetases class I (W and Y) CO539_005945 PF01527 Transposase CO539_005950 PF13333 Integrase core domain CO539_005950 PF00665 Integrase core domain CO539_005950 PF13276 HTH-like domain CO539_005955 PF16870 2-oxoglutarate dehydrogenase C-terminal CO539_005955 PF02779 Transketolase, pyrimidine binding domain CO539_005955 PF00676 Dehydrogenase E1 component CO539_005955 PF16078 2-oxoglutarate dehydrogenase N-terminus CO539_005995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CO539_006000 PF13091 PLD-like domain CO539_006030 PF01790 Prolipoprotein diacylglyceryl transferase CO539_006035 PF01668 SmpB protein CO539_006055 PF00551 Formyl transferase CO539_006065 PF05193 Peptidase M16 inactive domain CO539_006065 PF00675 Insulinase (Peptidase family M16) CO539_006070 PF01252 Signal peptidase (SPase) II CO539_006075 PF01687 Riboflavin kinase CO539_006075 PF06574 FAD synthetase CO539_006080 PF00462 Glutaredoxin CO539_006090 PF00679 Elongation factor G C-terminus CO539_006090 PF03144 Elongation factor Tu domain 2 CO539_006090 PF00009 Elongation factor Tu GTP binding domain CO539_006090 PF06421 GTP-binding protein LepA C-terminus CO539_006090 PF14492 Elongation Factor G, domain II CO539_006105 PF03471 Transporter associated domain CO539_006105 PF03741 Integral membrane protein TerC family CO539_006110 PF00117 Glutamine amidotransferase class-I CO539_006110 PF00958 GMP synthase C terminal domain CO539_006110 PF02540 NAD synthase CO539_006115 PF00263 Bacterial type II and III secretion system protein CO539_006115 PF03958 Bacterial type II/III secretion system short domain CO539_006135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006145 PF01578 Cytochrome C assembly protein CO539_006150 PF03618 Kinase/pyrophosphorylase CO539_006155 PF00444 Ribosomal protein L36 CO539_006175 PF00271 Helicase conserved C-terminal domain CO539_006175 PF17191 RecG wedge domain CO539_006175 PF00270 DEAD/DEAH box helicase CO539_006205 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006220 PF00919 Uncharacterized protein family UPF0004 CO539_006220 PF04055 Radical SAM superfamily CO539_006230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006255 PF02355 Protein export membrane protein CO539_006265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CO539_006265 PF03900 Porphobilinogen deaminase, C-terminal domain CO539_006270 PF01565 FAD binding domain CO539_006270 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CO539_006275 PF00375 Sodium:dicarboxylate symporter family CO539_006280 PF00156 Phosphoribosyl transferase domain CO539_006300 PF03120 NAD-dependent DNA ligase OB-fold domain CO539_006300 PF01653 NAD-dependent DNA ligase adenylation domain CO539_006300 PF00533 BRCA1 C Terminus (BRCT) domain CO539_006300 PF12826 Helix-hairpin-helix motif CO539_006335 PF01820 D-ala D-ala ligase N-terminus CO539_006335 PF07478 D-ala D-ala ligase C-terminus CO539_006350 PF11953 Domain of unknown function (DUF3470) CO539_006350 PF00037 4Fe-4S binding domain CO539_006355 PF02481 DNA recombination-mediator protein A CO539_006355 PF17782 DprA winged helix domain CO539_006375 PF02810 SEC-C motif CO539_006375 PF01043 SecA preprotein cross-linking domain CO539_006375 PF07517 SecA DEAD-like domain CO539_006375 PF07516 SecA Wing and Scaffold domain CO539_006395 PF02646 RmuC family CO539_006400 PF00768 D-alanyl-D-alanine carboxypeptidase CO539_006400 PF07943 Penicillin-binding protein 5, C-terminal domain CO539_006405 PF04002 RadC-like JAB domain CO539_006420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CO539_006420 PF01578 Cytochrome C assembly protein CO539_006430 PF01624 MutS domain I CO539_006430 PF05190 MutS family domain IV CO539_006430 PF00488 MutS domain V CO539_006430 PF05188 MutS domain II CO539_006430 PF05192 MutS domain III CO539_006440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006455 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006465 PF03448 MgtE intracellular N domain CO539_006465 PF01769 Divalent cation transporter CO539_006465 PF00571 CBS domain CO539_006485 PF01479 S4 domain CO539_006485 PF00849 RNA pseudouridylate synthase CO539_006490 PF00083 Sugar (and other) transporter CO539_006490 PF08946 Osmosensory transporter coiled coil CO539_006510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006525 PF02938 GAD domain CO539_006525 PF00152 tRNA synthetases class II (D, K and N) CO539_006525 PF01336 OB-fold nucleic acid binding domain CO539_006540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006560 PF08946 Osmosensory transporter coiled coil CO539_006560 PF00083 Sugar (and other) transporter CO539_006565 PF00849 RNA pseudouridylate synthase CO539_006565 PF01479 S4 domain CO539_006585 PF00571 CBS domain CO539_006585 PF01769 Divalent cation transporter CO539_006585 PF03448 MgtE intracellular N domain CO539_006595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006675 PF04002 RadC-like JAB domain CO539_006700 PF13091 PLD-like domain CO539_006725 PF10531 SLBB domain CO539_006725 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CO539_006725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CO539_006730 PF05198 Translation initiation factor IF-3, N-terminal domain CO539_006730 PF00707 Translation initiation factor IF-3, C-terminal domain CO539_006735 PF03129 Anticodon binding domain CO539_006735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO539_006735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO539_006745 PF12838 4Fe-4S dicluster domain CO539_006750 PF10396 GTP-binding protein TrmE N-terminus CO539_006750 PF01926 50S ribosome-binding GTPase CO539_006750 PF12631 MnmE helical domain CO539_006760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_006775 PF00953 Glycosyl transferase family 4 CO539_006780 PF01351 Ribonuclease HII CO539_006800 PF02769 AIR synthase related protein, C-terminal domain CO539_006800 PF00586 AIR synthase related protein, N-terminal domain CO539_006805 PF01259 SAICAR synthetase CO539_006810 PF01746 tRNA (Guanine-1)-methyltransferase CO539_006815 PF01245 Ribosomal protein L19 CO539_006820 PF00528 Binding-protein-dependent transport system inner membrane component CO539_006835 PF01243 Pyridoxamine 5'-phosphate oxidase CO539_006835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CO539_006840 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CO539_006840 PF06827 Zinc finger found in FPG and IleRS CO539_006840 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CO539_006875 PF10609 NUBPL iron-transfer P-loop NTPase CO539_006890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006930 PF01098 Cell cycle protein CO539_006935 PF00266 Aminotransferase class-V CO539_006960 PF08671 Anti-repressor SinI CO539_006960 PF01381 Helix-turn-helix CO539_006965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_006975 PF04002 RadC-like JAB domain CO539_006980 PF01381 Helix-turn-helix CO539_006985 PF01119 DNA mismatch repair protein, C-terminal domain CO539_006985 PF08676 MutL C terminal dimerisation domain CO539_006995 PF14602 Hexapeptide repeat of succinyl-transferase CO539_006995 PF12804 MobA-like NTP transferase domain CO539_006995 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_007000 PF01370 NAD dependent epimerase/dehydratase family CO539_007020 PF00664 ABC transporter transmembrane region CO539_007020 PF00005 ABC transporter CO539_007025 PF01212 Beta-eliminating lyase CO539_007030 PF01212 Beta-eliminating lyase CO539_007040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CO539_007040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CO539_007040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CO539_007045 PF00892 EamA-like transporter family CO539_007070 PF01523 Putative modulator of DNA gyrase CO539_007075 PF00355 Rieske [2Fe-2S] domain CO539_007075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CO539_007080 PF03989 DNA gyrase C-terminal domain, beta-propeller CO539_007080 PF00521 DNA gyrase/topoisomerase IV, subunit A CO539_007100 PF02632 BioY family CO539_007105 PF00881 Nitroreductase family CO539_007115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_007130 PF00571 CBS domain CO539_007130 PF03471 Transporter associated domain