locus-tag	class	description
CO539_000005	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CO539_000015	COG2076	Multidrug Resistance protein
CO539_000030	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CO539_000035	COG0126	phosphoglycerate kinase activity
CO539_000050	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CO539_000060	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CO539_000065	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CO539_000070	COG2801	Transposase and inactivated derivatives
CO539_000085	COG3344	reverse transcriptase
CO539_000090	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CO539_000090	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CO539_000095	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CO539_000100	COG0316	Belongs to the HesB IscA family
CO539_000115	COG2945	thiolester hydrolase activity
CO539_000120	COG1104	cysteine desulfurase activity
CO539_000125	COG0670	Belongs to the BI1 family
CO539_000130	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CO539_000150	COG3344	reverse transcriptase
CO539_000165	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CO539_000175	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CO539_000200	COG0629	single-stranded DNA binding
CO539_000205	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CO539_000220	COG3344	reverse transcriptase
CO539_000240	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CO539_000275	COG2801	Transposase and inactivated derivatives
CO539_000285	COG2801	Transposase and inactivated derivatives
CO539_000290	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CO539_000295	COG0799	negative regulation of ribosome biogenesis
CO539_000305	COG1012	belongs to the aldehyde dehydrogenase family
CO539_000315	COG0494	nUDIX hydrolase
CO539_000320	COG0084	hydrolase, TatD family'
CO539_000325	COG0039	L-malate dehydrogenase activity
CO539_000330	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CO539_000335	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CO539_000340	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CO539_000345	COG0537	adenosine 5'-monophosphoramidase activity
CO539_000365	COG1090	epimerase
CO539_000375	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CO539_000380	COG0416	fatty acid biosynthetic process
CO539_000385	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CO539_000390	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CO539_000395	COG1127	ABC transporter
CO539_000400	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CO539_000415	COG0543	2 iron, 2 sulfur cluster binding
CO539_000415	COG0493	'glutamate synthase
CO539_000420	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CO539_000435	COG0750	zinc metalloprotease
CO539_000450	COG0776	regulation of translation
CO539_000455	COG0539	negative regulation of cytoplasmic translation
CO539_000460	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CO539_000480	COG2801	Transposase and inactivated derivatives
CO539_000505	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CO539_000510	COG0045	succinate-CoA ligase (ADP-forming) activity
CO539_000525	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CO539_000555	COG1192	Involved in chromosome partitioning
CO539_000560	COG1475	DNA binding
CO539_000565	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CO539_000565	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CO539_000580	COG3344	reverse transcriptase
CO539_000590	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CO539_000595	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CO539_000605	COG0156	8-amino-7-oxononanoate synthase activity
CO539_000615	COG0326	Molecular chaperone. Has ATPase activity
CO539_000630	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CO539_000660	COG0666	response to abiotic stimulus
CO539_000665	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
CO539_000670	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CO539_000675	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CO539_000680	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CO539_000685	COG0142	geranyltranstransferase activity
CO539_000695	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CO539_000700	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CO539_000715	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CO539_000725	COG0105	UTP biosynthetic process
CO539_000730	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CO539_000735	COG4536	flavin adenine dinucleotide binding
CO539_000740	COG3750	Belongs to the UPF0335 family
CO539_000745	COG0163	prenyltransferase activity
CO539_000750	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CO539_000765	COG0495	leucyl-tRNA aminoacylation
CO539_000780	COG0776	regulation of translation
CO539_000830	COG2801	Transposase and inactivated derivatives
CO539_000870	COG3344	reverse transcriptase
CO539_000885	COG0321	lipoyl(octanoyl) transferase activity
CO539_000890	COG1619	proteins homologs of microcin C7 resistance protein MccF
CO539_000900	COG0587	DNA-directed DNA polymerase activity
CO539_000905	COG0360	Binds together with S18 to 16S ribosomal RNA
CO539_000910	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CO539_000915	COG0359	binds to the 23S rRNA
CO539_000920	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CO539_000935	COG2801	Transposase and inactivated derivatives
CO539_000950	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CO539_000995	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CO539_000995	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CO539_001005	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
CO539_001020	COG2801	Transposase and inactivated derivatives
CO539_001060	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CO539_001075	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CO539_001100	COG3344	reverse transcriptase
CO539_001115	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CO539_001120	COG2857	Cytochrome c1
CO539_001120	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CO539_001125	COG0556	nucleotide-excision repair
CO539_001130	COG2801	Transposase and inactivated derivatives
CO539_001145	COG0484	heat shock protein binding
CO539_001155	COG0124	histidyl-tRNA synthetase
CO539_001160	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CO539_001170	COG0531	amino acid
CO539_001175	COG1113	amino acid transport
CO539_001185	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CO539_001190	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CO539_001195	COG2967	ApaG domain
CO539_001200	COG1178	ABC-type Fe3 transport system permease component
CO539_001250	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
CO539_001260	COG3451	type IV secretory pathway VirB4
CO539_001265	COG3704	protein secretion by the type IV secretion system
CO539_001270	COG3704	protein secretion by the type IV secretion system
CO539_001275	COG1340	protein secretion by the type IV secretion system
CO539_001275	COG3704	protein secretion by the type IV secretion system
CO539_001295	COG2801	Transposase and inactivated derivatives
CO539_001315	COG3344	reverse transcriptase
CO539_001325	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CO539_001330	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CO539_001340	COG0072	phenylalanine-tRNA ligase activity
CO539_001340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CO539_001350	COG0356	it plays a direct role in the translocation of protons across the membrane
CO539_001355	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CO539_001375	COG1612	heme a metabolic process
CO539_001380	COG0439	Biotin carboxylase
CO539_001390	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CO539_001395	COG0071	Belongs to the small heat shock protein (HSP20) family
CO539_001400	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CO539_001415	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CO539_001425	COG3827	peptidoglycan binding
CO539_001430	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CO539_001450	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CO539_001455	COG0343	queuine tRNA-ribosyltransferase activity
CO539_001465	COG0612	Peptidase, M16
CO539_001470	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CO539_001515	COG0445	tRNA wobble uridine modification
CO539_001555	COG3451	type IV secretory pathway VirB4
CO539_001570	COG2070	2-Nitropropane dioxygenase
CO539_001580	COG0649	NAD binding
CO539_001590	COG3344	reverse transcriptase
CO539_001600	COG2801	Transposase and inactivated derivatives
CO539_001610	COG2801	Transposase and inactivated derivatives
CO539_001625	COG0745	RESPONSE REGULATOR receiver
CO539_001630	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CO539_001635	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CO539_001650	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CO539_001655	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CO539_001690	COG0726	polysaccharide deacetylase
CO539_001695	COG0768	penicillin binding
CO539_001700	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CO539_001705	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CO539_001710	COG0740	serine-type endopeptidase activity
CO539_001715	COG0544	peptidyl-prolyl cis-trans isomerase activity
CO539_001740	COG2890	protein-(glutamine-N5) methyltransferase activity
CO539_001740	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CO539_001745	COG3344	reverse transcriptase
CO539_001755	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CO539_001760	COG0049	tRNA binding
CO539_001765	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CO539_001770	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CO539_001785	COG0250	Participates in transcription elongation, termination and antitermination
CO539_001790	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CO539_001795	COG0081	regulation of translation
CO539_001800	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CO539_001810	COG0085	RNA polymerase activity
CO539_001810	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CO539_001830	COG0151	Belongs to the GarS family
CO539_001840	COG0473	3-isopropylmalate dehydrogenase activity
CO539_001885	COG3344	reverse transcriptase
CO539_001915	COG2801	Transposase and inactivated derivatives
CO539_001935	COG2171	N-acyltransferase activity
CO539_001945	COG1053	succinate dehydrogenase
CO539_001955	COG0194	GDP metabolic process
CO539_001970	COG0540	Belongs to the ATCase OTCase family
CO539_001975	COG1840	ABC-type Fe3 transport system, periplasmic component
CO539_001985	COG2801	Transposase and inactivated derivatives
CO539_001995	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CO539_002000	COG0254	rRNA binding
CO539_002005	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CO539_002015	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CO539_002030	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CO539_002050	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CO539_002055	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CO539_002060	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CO539_002070	COG0138	bifunctional purine biosynthesis protein purh
CO539_002075	COG2801	Transposase and inactivated derivatives
CO539_002085	COG2801	Transposase and inactivated derivatives
CO539_002105	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CO539_002110	COG2801	Transposase and inactivated derivatives
CO539_002120	COG0285	dihydrofolate synthase activity
CO539_002135	COG2867	negative regulation of translational initiation
CO539_002140	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CO539_002170	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CO539_002175	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CO539_002180	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CO539_002185	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CO539_002195	COG0592	DNA-directed DNA polymerase activity
CO539_002200	COG0101	tRNA pseudouridine synthase activity
CO539_002205	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CO539_002215	COG0193	aminoacyl-tRNA hydrolase activity
CO539_002220	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CO539_002240	COG0275	rRNA processing
CO539_002245	COG0477	Major facilitator Superfamily
CO539_002250	COG0024	Methionine aminopeptidase
CO539_002255	COG0849	cell division
CO539_002260	COG0242	peptide deformylase activity
CO539_002265	COG1573	uracil-dna glycosylase
CO539_002280	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CO539_002295	COG1295	ribonuclease BN
CO539_002300	COG1028	Short-chain dehydrogenase reductase Sdr
CO539_002305	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CO539_002315	COG0564	pseudouridine synthase activity
CO539_002325	COG0658	competence protein
CO539_002325	COG2333	competence protein COMEC
CO539_002345	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CO539_002365	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CO539_002370	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CO539_002380	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CO539_002390	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CO539_002410	COG3344	reverse transcriptase
CO539_002420	COG2801	Transposase and inactivated derivatives
CO539_002435	COG0493	'glutamate synthase
CO539_002435	COG0543	2 iron, 2 sulfur cluster binding
CO539_002440	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CO539_002450	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CO539_002460	COG0482	sulfurtransferase activity
CO539_002475	COG2885	chlorophyll binding
CO539_002480	COG0037	tRNA processing
CO539_002485	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CO539_002490	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CO539_002500	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CO539_002525	COG0508	dehydrogenase complex catalyzes the overall conversion of
CO539_002565	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CO539_002575	COG2205	protein histidine kinase activity
CO539_002580	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CO539_002595	COG3344	reverse transcriptase
CO539_002610	COG0628	permease
CO539_002620	COG4974	Belongs to the 'phage' integrase family
CO539_002630	COG0268	Binds directly to 16S ribosomal RNA
CO539_002635	COG0372	Belongs to the citrate synthase family
CO539_002665	COG2255	four-way junction helicase activity
CO539_002670	COG0632	four-way junction helicase activity
CO539_002675	COG3474	cytochrome
CO539_002695	COG0839	Belongs to the complex I subunit 6 family
CO539_002700	COG0713	ATP synthesis coupled electron transport
CO539_002710	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CO539_002715	COG1007	ATP synthesis coupled electron transport
CO539_002725	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
CO539_002730	COG2801	Transposase and inactivated derivatives
CO539_002765	COG2801	Transposase and inactivated derivatives
CO539_002800	COG3344	reverse transcriptase
CO539_002830	COG0542	response to heat
CO539_002835	COG2902	Dehydrogenase
CO539_002845	COG0745	RESPONSE REGULATOR receiver
CO539_002845	COG3706	GGDEF domain
CO539_002850	COG1381	Involved in DNA repair and RecF pathway recombination
CO539_002880	COG2801	Transposase and inactivated derivatives
CO539_002885	COG2801	Transposase and inactivated derivatives
CO539_002920	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CO539_002925	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CO539_002940	COG2801	Transposase and inactivated derivatives
CO539_002955	COG0174	glutamine synthetase
CO539_002960	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CO539_002975	COG3577	Aspartyl protease
CO539_002985	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CO539_003000	COG0756	dUTP diphosphatase activity
CO539_003010	COG3344	reverse transcriptase
CO539_003020	COG0450	alkyl hydroperoxide reductase
CO539_003030	COG2801	Transposase and inactivated derivatives
CO539_003035	COG3344	reverse transcriptase
CO539_003075	COG3344	reverse transcriptase
CO539_003090	COG2801	Transposase and inactivated derivatives
CO539_003100	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CO539_003105	COG1121	(ABC) transporter
CO539_003110	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CO539_003125	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CO539_003130	COG1530	ribonuclease E activity
CO539_003140	COG0271	Belongs to the BolA IbaG family
CO539_003145	COG0626	cystathionine gamma-synthase activity
CO539_003155	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CO539_003165	COG0009	L-threonylcarbamoyladenylate synthase
CO539_003190	COG0305	Participates in initiation and elongation during chromosome replication
CO539_003200	COG1714	RDD family
CO539_003210	COG2801	Transposase and inactivated derivatives
CO539_003225	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CO539_003230	COG0237	dephospho-CoA kinase activity
CO539_003240	COG3344	reverse transcriptase
CO539_003245	COG3344	reverse transcriptase
CO539_003260	COG3344	reverse transcriptase
CO539_003270	COG2801	Transposase and inactivated derivatives
CO539_003280	COG0666	response to abiotic stimulus
CO539_003285	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CO539_003300	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CO539_003310	COG2801	Transposase and inactivated derivatives
CO539_003320	COG3344	reverse transcriptase
CO539_003335	COG2801	Transposase and inactivated derivatives
CO539_003350	COG0805	protein transport
CO539_003375	COG3344	reverse transcriptase
CO539_003390	COG2801	Transposase and inactivated derivatives
CO539_003395	COG0617	tRNA 3'-terminal CCA addition
CO539_003405	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
CO539_003405	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CO539_003420	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CO539_003435	COG1074	ATP-dependent DNA helicase activity
CO539_003490	COG0358	DNA primase activity
CO539_003495	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CO539_003515	COG2801	Transposase and inactivated derivatives
CO539_003530	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CO539_003545	COG3344	reverse transcriptase
CO539_003550	COG2801	Transposase and inactivated derivatives
CO539_003565	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CO539_003575	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CO539_003590	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CO539_003600	COG0575	Belongs to the CDS family
CO539_003605	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CO539_003615	COG0508	dehydrogenase complex catalyzes the overall conversion of
CO539_003620	COG3344	reverse transcriptase
CO539_003640	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CO539_003655	COG0012	GTP binding
CO539_003665	COG1494	fructose-1,6-bisphosphatase
CO539_003680	COG3842	ATPase activity
CO539_003685	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CO539_003695	COG3932	Exopolysaccharide synthesis, ExoD
CO539_003700	COG0215	cysteine-tRNA ligase activity
CO539_003720	COG0109	protoheme IX farnesyltransferase activity
CO539_003725	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CO539_003730	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CO539_003735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CO539_003745	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CO539_003750	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CO539_003765	COG4974	Belongs to the 'phage' integrase family
CO539_003780	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CO539_003790	COG0525	valine-tRNA ligase activity
CO539_003805	COG0284	orotidine-5'-phosphate decarboxylase activity
CO539_003820	COG2801	Transposase and inactivated derivatives
CO539_003830	COG3344	reverse transcriptase
CO539_003850	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CO539_003865	COG2801	Transposase and inactivated derivatives
CO539_003875	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CO539_003895	COG2801	Transposase and inactivated derivatives
CO539_003900	COG3344	reverse transcriptase
CO539_003910	COG2801	Transposase and inactivated derivatives
CO539_003925	COG0736	holo-[acyl-carrier-protein] synthase activity
CO539_003950	COG3344	reverse transcriptase
CO539_003975	COG2801	Transposase and inactivated derivatives
CO539_003990	COG1115	amino acid carrier protein
CO539_004000	COG2801	Transposase and inactivated derivatives
CO539_004005	COG0424	maF-like protein
CO539_004020	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CO539_004030	COG2801	Transposase and inactivated derivatives
CO539_004035	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CO539_004040	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CO539_004045	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CO539_004070	COG2801	Transposase and inactivated derivatives
CO539_004080	COG2814	Major facilitator Superfamily
CO539_004095	COG3344	reverse transcriptase
CO539_004105	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CO539_004110	COG3344	reverse transcriptase
CO539_004120	COG2801	Transposase and inactivated derivatives
CO539_004135	COG1674	ftsk spoiiie
CO539_004150	COG2801	Transposase and inactivated derivatives
CO539_004165	COG2801	Transposase and inactivated derivatives
CO539_004175	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CO539_004180	COG0148	phosphopyruvate hydratase activity
CO539_004195	COG3346	SURF1 family
CO539_004225	COG2801	Transposase and inactivated derivatives
CO539_004235	COG0114	fumarate hydratase activity
CO539_004250	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CO539_004255	COG2801	Transposase and inactivated derivatives
CO539_004270	COG0484	heat shock protein binding
CO539_004285	COG0823	Involved in the tonB-independent uptake of proteins
CO539_004290	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CO539_004295	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CO539_004300	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CO539_004305	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CO539_004325	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CO539_004330	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CO539_004340	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CO539_004365	COG3344	reverse transcriptase
CO539_004390	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CO539_004420	COG0508	dehydrogenase complex catalyzes the overall conversion of
CO539_004420	COG0022	dehydrogenase e1 component
CO539_004430	COG0681	Belongs to the peptidase S26 family
CO539_004445	COG0316	Belongs to the HesB IscA family
CO539_004450	COG0822	iron-sulfur transferase activity
CO539_004455	COG0552	protein localization to endoplasmic reticulum
CO539_004485	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CO539_004490	COG0459	protein refolding
CO539_004500	COG2801	Transposase and inactivated derivatives
CO539_004505	COG3344	reverse transcriptase
CO539_004515	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CO539_004520	COG0477	Major facilitator Superfamily
CO539_004530	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CO539_004540	COG2801	Transposase and inactivated derivatives
CO539_004550	COG3505	Type IV secretory pathway VirD4
CO539_004555	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
CO539_004570	COG3736	Type IV secretory pathway, component VirB8
CO539_004595	COG0717	Belongs to the dCTP deaminase family
CO539_004600	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CO539_004615	COG0233	cytoplasmic translational termination
CO539_004625	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CO539_004630	COG0052	Belongs to the universal ribosomal protein uS2 family
CO539_004640	COG1862	Preprotein translocase
CO539_004675	COG0504	CTP synthase activity
CO539_004685	COG0590	tRNA wobble adenosine to inosine editing
CO539_004695	COG4133	protoheme IX ABC transporter activity
CO539_004700	COG0018	arginyl-trna synthetase
CO539_004715	COG1132	(ABC) transporter
CO539_004725	COG2814	Major facilitator Superfamily
CO539_004760	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CO539_004770	COG0280	phosphate acetyltransferase
CO539_004770	COG0281	malic enzyme
CO539_004775	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CO539_004790	COG0217	transcriptional regulatory protein
CO539_004795	COG0739	heme binding
CO539_004830	COG0574	Belongs to the PEP-utilizing enzyme family
CO539_004830	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CO539_004835	COG2003	Belongs to the UPF0758 family
CO539_004925	COG2801	Transposase and inactivated derivatives
CO539_004950	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CO539_004955	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CO539_004960	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CO539_004965	COG0792	nuclease activity
CO539_004970	COG0203	ribosomal protein L17
CO539_004975	COG0202	RNA polymerase activity
CO539_004980	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CO539_004985	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CO539_004990	COG0563	adenylate kinase activity
CO539_004995	COG0201	protein transport
CO539_005000	COG0200	Binds to the 23S rRNA
CO539_005005	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CO539_005010	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CO539_005015	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CO539_005020	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CO539_005025	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CO539_005030	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CO539_005035	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CO539_005040	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CO539_005045	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CO539_005050	COG0255	Belongs to the universal ribosomal protein uL29 family
CO539_005055	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CO539_005060	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CO539_005065	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CO539_005070	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CO539_005075	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CO539_005085	COG0088	Forms part of the polypeptide exit tunnel
CO539_005090	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CO539_005095	COG0051	transcription antitermination factor activity, RNA binding
CO539_005100	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CO539_005125	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CO539_005140	COG3344	reverse transcriptase
CO539_005155	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CO539_005160	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CO539_005170	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CO539_005175	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CO539_005185	COG1845	cytochrome c oxidase, subunit III
CO539_005190	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CO539_005195	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CO539_005200	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CO539_005200	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CO539_005225	COG3344	reverse transcriptase
CO539_005245	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CO539_005250	COG0573	inorganic phosphate transmembrane transporter activity
CO539_005255	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CO539_005260	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CO539_005275	COG3344	reverse transcriptase
CO539_005295	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CO539_005300	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CO539_005310	COG0307	riboflavin synthase, alpha
CO539_005320	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CO539_005355	COG3344	reverse transcriptase
CO539_005365	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CO539_005365	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CO539_005370	COG0154	amidase activity
CO539_005395	COG0688	phosphatidylethanolamine metabolic process
CO539_005400	COG1183	phosphatidylcholine synthase activity
CO539_005405	COG1115	amino acid carrier protein
CO539_005410	COG1115	amino acid carrier protein
CO539_005415	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CO539_005425	COG1230	cation diffusion facilitator family transporter
CO539_005445	COG2801	Transposase and inactivated derivatives
CO539_005450	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CO539_005460	COG0322	excinuclease ABC activity
CO539_005465	COG0751	glycine-tRNA ligase activity
CO539_005470	COG0752	glycyl-tRNA synthetase alpha subunit
CO539_005490	COG2801	Transposase and inactivated derivatives
CO539_005495	COG0113	porphobilinogen synthase activity
CO539_005500	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CO539_005505	COG1034	ATP synthesis coupled electron transport
CO539_005515	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CO539_005530	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CO539_005535	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CO539_005545	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CO539_005560	COG3344	reverse transcriptase
CO539_005575	COG0571	ribonuclease III activity
CO539_005580	COG0167	dihydroorotate dehydrogenase activity
CO539_005595	COG1830	Aldolase
CO539_005605	COG0542	response to heat
CO539_005610	COG0513	Belongs to the DEAD box helicase family
CO539_005615	COG1278	Cold shock
CO539_005620	COG0312	modulator of DNA gyrase
CO539_005625	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CO539_005640	COG4591	ABC-type transport system involved in lipoprotein release permease component
CO539_005665	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CO539_005670	COG2009	succinate dehydrogenase
CO539_005695	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CO539_005700	COG1006	Multisubunit Na H antiporter MnhC subunit
CO539_005710	COG2111	Na H antiporter
CO539_005710	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CO539_005725	COG1758	RNA polymerase activity
CO539_005735	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CO539_005755	COG0330	HflC and HflK could
CO539_005775	COG2801	Transposase and inactivated derivatives
CO539_005785	COG2801	Transposase and inactivated derivatives
CO539_005870	COG2801	Transposase and inactivated derivatives
CO539_005875	COG0149	triose-phosphate isomerase activity
CO539_005885	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CO539_005895	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CO539_005905	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CO539_005910	COG0228	four-way junction DNA binding
CO539_005915	COG0142	geranyltranstransferase activity
CO539_005920	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CO539_005930	COG2801	Transposase and inactivated derivatives
CO539_005950	COG2801	Transposase and inactivated derivatives
CO539_005955	COG0567	Dehydrogenase, E1 component
CO539_005965	COG2801	Transposase and inactivated derivatives
CO539_005995	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CO539_006015	COG2801	Transposase and inactivated derivatives
CO539_006030	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CO539_006035	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CO539_006055	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CO539_006065	COG0612	Peptidase, M16
CO539_006070	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CO539_006075	COG0196	riboflavin kinase activity
CO539_006090	COG0481	GTPase activity
CO539_006105	COG1253	flavin adenine dinucleotide binding
CO539_006110	COG0519	Catalyzes the synthesis of GMP from XMP
CO539_006110	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CO539_006115	COG1450	Type ii and iii secretion system protein
CO539_006135	COG3344	reverse transcriptase
CO539_006145	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CO539_006150	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CO539_006155	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CO539_006175	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CO539_006185	COG2801	Transposase and inactivated derivatives
CO539_006205	COG3344	reverse transcriptase
CO539_006220	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CO539_006230	COG3344	reverse transcriptase
CO539_006240	COG2801	Transposase and inactivated derivatives
CO539_006255	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CO539_006270	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CO539_006275	COG1301	dicarboxylic acid transport
CO539_006280	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CO539_006290	COG2801	Transposase and inactivated derivatives
CO539_006300	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CO539_006310	COG2801	Transposase and inactivated derivatives
CO539_006325	COG2801	Transposase and inactivated derivatives
CO539_006335	COG1181	Belongs to the D-alanine--D-alanine ligase family
CO539_006350	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CO539_006355	COG0758	DNA mediated transformation
CO539_006365	COG2801	Transposase and inactivated derivatives
CO539_006375	COG0653	protein targeting
CO539_006395	COG1322	Protein conserved in bacteria
CO539_006400	COG1686	Belongs to the peptidase S11 family
CO539_006405	COG2003	Belongs to the UPF0758 family
CO539_006420	COG1138	Cytochrome C-type biogenesis protein
CO539_006430	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CO539_006440	COG3344	reverse transcriptase
CO539_006455	COG3344	reverse transcriptase
CO539_006465	COG2239	Acts as a magnesium transporter
CO539_006485	COG0564	pseudouridine synthase activity
CO539_006490	COG0477	Major facilitator Superfamily
CO539_006510	COG3344	reverse transcriptase
CO539_006525	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CO539_006540	COG3344	reverse transcriptase
CO539_006560	COG0477	Major facilitator Superfamily
CO539_006565	COG0564	pseudouridine synthase activity
CO539_006585	COG2239	Acts as a magnesium transporter
CO539_006595	COG3344	reverse transcriptase
CO539_006660	COG2801	Transposase and inactivated derivatives
CO539_006675	COG2003	Belongs to the UPF0758 family
CO539_006705	COG2801	Transposase and inactivated derivatives
CO539_006725	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CO539_006730	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CO539_006735	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CO539_006745	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CO539_006760	COG0492	ferredoxin-NADP+ reductase activity
CO539_006780	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CO539_006800	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CO539_006805	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CO539_006810	COG0336	Belongs to the RNA methyltransferase TrmD family
CO539_006815	COG0335	large ribosomal subunit rRNA binding
CO539_006820	COG0581	inorganic phosphate transmembrane transporter activity
CO539_006825	COG0047	phosphoribosylformylglycinamidine synthase activity
CO539_006830	COG2801	Transposase and inactivated derivatives
CO539_006835	COG0259	pyridoxamine-phosphate oxidase activity
CO539_006840	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CO539_006875	COG0489	protein tyrosine kinase activity
CO539_006890	COG3344	reverse transcriptase
CO539_006905	COG2801	Transposase and inactivated derivatives
CO539_006930	COG0772	Belongs to the SEDS family
CO539_006935	COG1104	cysteine desulfurase activity
CO539_006945	COG2801	Transposase and inactivated derivatives
CO539_006965	COG3344	reverse transcriptase
CO539_006975	COG2003	Belongs to the UPF0758 family
CO539_006980	COG1396	sequence-specific DNA binding
CO539_006995	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CO539_007000	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CO539_007020	COG1132	(ABC) transporter
CO539_007045	COG0697	spore germination
CO539_007070	COG0312	modulator of DNA gyrase
CO539_007075	COG0723	plastoquinol--plastocyanin reductase activity
CO539_007100	COG1268	BioY protein
CO539_007115	COG3344	reverse transcriptase
CO539_007130	COG1253	flavin adenine dinucleotide binding